BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2625
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
Length = 380
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 127/236 (53%), Gaps = 30/236 (12%)
Query: 124 IYILKPCDGCQGKGIKLAMKIDDITSTMEF-----DSMICQQYITNPLLWN-GY-KFDIR 176
++I K G +G+GI ++ D T ++F + Q+Y+ +PLL G+ KFDIR
Sbjct: 149 VWIAKSSSGAKGEGILIS---SDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIR 205
Query: 177 FYVLITSVKHLRIYIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINK-NSENFN--E 233
+VL+ + IY+Y EG++R ++E Y ++TN +M HLTN+ I K +S+N+ E
Sbjct: 206 SWVLVDN--QYNIYLYREGVLRTSSEPY---SDTNFQDMTSHLTNHCIQKEHSKNYGRYE 260
Query: 234 DLSKQSLERMNKFLRDVHNVDL-NALYARIHDIIVKTVLTGYKP-ILREYLDTFKNYVYR 291
+ ++ E N++L N++L N++ +I +II + L+ +P I +YL
Sbjct: 261 EGNEMFFEEFNQYLVTSLNINLENSILCQIKEII-RVCLSCLEPAISTKYLPYHS----- 314
Query: 292 EACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIKTNLTRDLFSILNLNE 347
FQL GFD ++D + +L+E+N + + + + K + + S+ LNE
Sbjct: 315 ---FQLFGFDFMVDKNLKVWLIEVNGAPACAQKLYAE-LCKGIVDLAISSVFPLNE 366
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 384
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 110/202 (54%), Gaps = 23/202 (11%)
Query: 124 IYILKPCDGCQGKGIKLAMKIDDITSTMEFDSMI--CQQYITNPLLWN-GY-KFDIRFYV 179
++I K G +G+GI ++ + ++ ++ + Q+Y+ PLL G+ KFDIR +V
Sbjct: 146 VWIAKSSAGAKGEGILISSEASELLDFIDEQGQVHVIQKYLEKPLLLEPGHRKFDIRSWV 205
Query: 180 LITSVKHL-RIYIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKN-SENFN--EDL 235
L V HL IY+Y EG++R ++E Y N N + HLTN+ I K S+N+ E+
Sbjct: 206 L---VDHLYNIYLYREGVLRTSSEPY---NSANFQDKTCHLTNHCIQKEYSKNYGRYEEG 259
Query: 236 SKQSLERMNKFLRDVHNVDL-NALYARIHDIIVKTVLTGYKPILREYLDTFKNYVYREAC 294
++ E N++L D N L N++ +I II ++ L +P + + K+ Y+
Sbjct: 260 NEMFFEEFNQYLMDALNTTLENSILLQIKHII-RSCLMCIEPAI-----STKHLHYQS-- 311
Query: 295 FQLLGFDIILDSHCNPYLLEIN 316
FQL GFD ++D +L+E+N
Sbjct: 312 FQLFGFDFMVDEELKVWLIEVN 333
>pdb|3IS1|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In C2 Form At 2.45 Angstrom
Resolution
Length = 446
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 105 DKENERKPNVTTEVEENTPIYILKPCDGCQGKGIKLAMKIDDITSTMEFDSMICQQYITN 164
DK N+ N + + +L P GI+LA DIT FD++ Y+
Sbjct: 332 DKNNDGVQNDSNAAAAGITVNLLDPT------GIRLATTTTDITGHYNFDNLTNGNYLVE 385
Query: 165 PLLWNGY 171
++ GY
Sbjct: 386 FVMPEGY 392
>pdb|2NVV|A Chain A, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|B Chain B, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|C Chain C, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|D Chain D, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|E Chain E, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|F Chain F, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16
Length = 506
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 261 RIHDIIVKTVLTGYKPILREYLD 283
R H+II K V Y+P+LR+YL+
Sbjct: 439 RAHEIIDKCVHPDYRPLLRQYLE 461
>pdb|3IRP|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus At 1.50 Angstrom Resolution
pdb|3IRZ|A Chain A, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In P212121 Form
pdb|3IS0|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In The Presence Of
Cholesterol
Length = 429
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 105 DKENERKPNVTTEVEENTPIYILKPCDGCQGKGIKLAMKIDDITSTMEFDSMICQQYITN 164
DK N+ N + + +L P GI+LA DIT FD++ Y+
Sbjct: 315 DKNNDGVQNDSNAAAAGITVNLLDPT------GIRLATTTTDITGHYNFDNLTNGNYLVE 368
Query: 165 PLLWNGY 171
++ GY
Sbjct: 369 FVMPEGY 375
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,616,510
Number of Sequences: 62578
Number of extensions: 425583
Number of successful extensions: 1182
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1170
Number of HSP's gapped (non-prelim): 21
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)