Query psy2625
Match_columns 396
No_of_seqs 199 out of 1277
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 21:00:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2156|consensus 100.0 3.4E-54 7.3E-59 432.6 16.7 306 82-396 259-619 (662)
2 PF03133 TTL: Tubulin-tyrosine 100.0 6E-54 1.3E-58 419.0 11.0 266 65-346 10-287 (292)
3 KOG2157|consensus 100.0 1.7E-42 3.8E-47 356.0 14.7 219 119-351 196-433 (497)
4 KOG2158|consensus 100.0 1.6E-40 3.5E-45 330.5 8.8 221 119-345 223-450 (565)
5 KOG2155|consensus 99.9 3.7E-27 8.1E-32 233.9 6.7 213 115-349 405-624 (631)
6 PF14398 ATPgrasp_YheCD: YheC/ 99.9 6.3E-24 1.4E-28 205.3 19.3 216 79-340 12-255 (262)
7 PF08443 RimK: RimK-like ATP-g 99.0 6.3E-10 1.4E-14 102.5 8.7 130 122-324 39-174 (190)
8 PF07478 Dala_Dala_lig_C: D-al 99.0 6.3E-09 1.4E-13 97.2 15.1 144 121-327 32-183 (203)
9 PRK01966 ddl D-alanyl-alanine 99.0 8.7E-09 1.9E-13 102.9 16.7 142 122-326 162-308 (333)
10 PRK14568 vanB D-alanine--D-lac 99.0 1.4E-08 3E-13 101.9 16.9 142 123-326 166-317 (343)
11 PRK10446 ribosomal protein S6 99.0 3.6E-09 7.8E-14 104.0 10.7 53 123-180 136-193 (300)
12 TIGR00768 rimK_fam alpha-L-glu 98.9 4.4E-09 9.5E-14 100.9 10.3 52 123-180 124-184 (277)
13 PRK14571 D-alanyl-alanine synt 98.9 2.5E-08 5.5E-13 97.9 15.8 143 122-327 125-273 (299)
14 PRK14569 D-alanyl-alanine synt 98.9 3.6E-08 7.7E-13 97.0 16.8 138 123-326 131-272 (296)
15 TIGR02291 rimK_rel_E_lig alpha 98.9 9.2E-09 2E-13 102.1 12.0 46 257-322 228-273 (317)
16 PRK01372 ddl D-alanine--D-alan 98.9 6.8E-08 1.5E-12 94.6 18.1 140 122-326 133-277 (304)
17 COG0189 RimK Glutathione synth 98.9 1.3E-08 2.9E-13 101.3 12.7 130 123-323 156-293 (318)
18 TIGR01205 D_ala_D_alaTIGR D-al 98.9 6.4E-08 1.4E-12 95.2 17.3 140 121-326 145-292 (315)
19 PF02655 ATP-grasp_3: ATP-gras 98.9 4.3E-09 9.4E-14 94.5 7.3 53 121-182 30-82 (161)
20 PRK14572 D-alanyl-alanine synt 98.8 1.3E-07 2.7E-12 95.2 17.2 147 122-327 171-323 (347)
21 TIGR02144 LysX_arch Lysine bio 98.8 2.3E-08 5.1E-13 96.6 11.0 52 123-180 123-183 (280)
22 PRK14570 D-alanyl-alanine synt 98.8 1.7E-07 3.7E-12 95.0 17.1 148 122-327 171-324 (364)
23 PLN02941 inositol-tetrakisphos 98.8 1.6E-07 3.5E-12 93.8 15.2 56 120-183 150-208 (328)
24 PF13535 ATP-grasp_4: ATP-gras 98.7 1.2E-07 2.5E-12 85.1 11.8 53 122-180 39-100 (184)
25 PF14397 ATPgrasp_ST: Sugar-tr 98.7 1.7E-07 3.7E-12 92.0 12.6 170 117-324 66-265 (285)
26 PLN02257 phosphoribosylamine-- 98.6 4.8E-07 1E-11 93.9 13.4 51 294-344 264-315 (434)
27 PRK05246 glutathione synthetas 98.5 7.2E-07 1.6E-11 88.6 9.6 73 117-202 149-229 (316)
28 TIGR03103 trio_acet_GNAT GNAT- 98.4 1.6E-06 3.4E-11 92.5 11.9 49 124-180 333-387 (547)
29 TIGR01161 purK phosphoribosyla 98.4 1.2E-05 2.6E-10 80.7 16.9 42 122-163 133-178 (352)
30 PRK13789 phosphoribosylamine-- 98.4 1.7E-06 3.7E-11 89.5 10.1 167 121-343 142-319 (426)
31 PRK06524 biotin carboxylase-li 98.3 1.2E-05 2.5E-10 84.2 14.5 163 123-347 182-355 (493)
32 PRK14573 bifunctional D-alanyl 98.3 1.9E-05 4.2E-10 87.9 17.1 147 123-326 611-763 (809)
33 PRK13790 phosphoribosylamine-- 98.3 5.1E-06 1.1E-10 84.6 11.5 52 122-179 102-160 (379)
34 COG1181 DdlA D-alanine-D-alani 98.3 8.4E-06 1.8E-10 81.3 12.7 142 117-327 137-294 (317)
35 TIGR01142 purT phosphoribosylg 98.3 1.1E-05 2.4E-10 81.4 13.8 43 121-163 135-186 (380)
36 PRK07206 hypothetical protein; 98.2 1.2E-05 2.6E-10 82.3 13.0 50 123-178 147-208 (416)
37 PRK12767 carbamoyl phosphate s 98.2 2.4E-05 5.1E-10 77.3 13.5 54 121-180 147-201 (326)
38 PRK06111 acetyl-CoA carboxylas 98.2 3.1E-05 6.8E-10 80.1 14.6 42 122-163 152-204 (450)
39 PRK12458 glutathione synthetas 98.2 1.2E-05 2.6E-10 80.8 11.0 51 125-180 165-221 (338)
40 TIGR00877 purD phosphoribosyla 98.2 3.2E-05 7E-10 79.4 14.4 49 123-177 140-199 (423)
41 PRK06019 phosphoribosylaminoim 98.2 4.1E-05 8.8E-10 77.8 14.8 44 120-163 133-180 (372)
42 PRK05586 biotin carboxylase; V 98.1 5.6E-05 1.2E-09 78.6 14.9 54 122-182 152-216 (447)
43 PRK13278 purP 5-formaminoimida 98.1 5.1E-05 1.1E-09 76.9 14.1 52 123-180 150-211 (358)
44 PRK00885 phosphoribosylamine-- 98.1 8.2E-05 1.8E-09 76.5 16.0 51 122-178 137-198 (420)
45 TIGR01380 glut_syn glutathione 98.1 1.3E-05 2.8E-10 79.6 9.7 55 121-180 152-213 (312)
46 TIGR00514 accC acetyl-CoA carb 98.1 1.9E-05 4.2E-10 82.0 11.3 42 122-163 152-204 (449)
47 PRK08591 acetyl-CoA carboxylas 98.1 5.3E-05 1.1E-09 78.6 13.4 42 122-163 152-204 (451)
48 PRK08462 biotin carboxylase; V 98.1 6.8E-05 1.5E-09 77.7 14.1 43 121-163 153-206 (445)
49 PRK02186 argininosuccinate lya 98.0 4E-05 8.7E-10 86.2 12.9 133 34-180 60-200 (887)
50 COG1821 Predicted ATP-utilizin 98.0 1.1E-05 2.3E-10 77.2 6.7 38 118-163 134-171 (307)
51 PRK09288 purT phosphoribosylgl 98.0 0.00011 2.3E-09 74.7 14.5 43 121-163 148-199 (395)
52 PRK12833 acetyl-CoA carboxylas 98.0 8.5E-05 1.8E-09 77.8 13.7 43 121-163 154-207 (467)
53 PRK14016 cyanophycin synthetas 98.0 3.3E-05 7.2E-10 85.1 11.0 52 121-180 248-305 (727)
54 PF02955 GSH-S_ATP: Prokaryoti 98.0 7.3E-05 1.6E-09 68.3 10.8 73 117-202 26-105 (173)
55 PRK06849 hypothetical protein; 97.9 9.3E-05 2E-09 75.3 12.3 51 122-178 152-204 (389)
56 PRK08463 acetyl-CoA carboxylas 97.9 0.00018 3.9E-09 75.6 14.7 42 122-163 152-204 (478)
57 TIGR01235 pyruv_carbox pyruvat 97.9 0.00016 3.4E-09 83.1 14.9 56 121-183 151-217 (1143)
58 TIGR01435 glu_cys_lig_rel glut 97.9 2.8E-05 6.1E-10 85.1 8.5 51 123-181 512-570 (737)
59 PRK07178 pyruvate carboxylase 97.8 0.00031 6.7E-09 73.7 14.3 43 121-163 150-203 (472)
60 PRK06395 phosphoribosylamine-- 97.8 0.00032 7E-09 72.9 13.7 74 256-344 245-318 (435)
61 PRK08654 pyruvate carboxylase 97.8 0.00037 7.9E-09 73.7 13.8 44 121-164 151-205 (499)
62 PRK05294 carB carbamoyl phosph 97.8 0.00049 1.1E-08 79.0 15.7 51 122-178 704-762 (1066)
63 PLN02948 phosphoribosylaminoim 97.8 0.00044 9.6E-09 74.4 14.4 42 122-163 156-203 (577)
64 PRK13277 5-formaminoimidazole- 97.8 0.00055 1.2E-08 69.2 14.1 53 122-180 152-218 (366)
65 PRK12999 pyruvate carboxylase; 97.7 0.0004 8.6E-09 80.0 14.1 55 121-182 155-220 (1146)
66 PRK02471 bifunctional glutamat 97.7 8.9E-05 1.9E-09 81.9 7.9 50 123-180 525-582 (752)
67 TIGR02068 cya_phycin_syn cyano 97.7 0.00012 2.6E-09 82.2 8.6 51 122-180 248-304 (864)
68 PRK05784 phosphoribosylamine-- 97.6 0.00061 1.3E-08 71.8 12.6 49 123-177 145-214 (486)
69 TIGR01369 CPSaseII_lrg carbamo 97.6 0.00079 1.7E-08 77.2 14.4 53 122-179 704-763 (1050)
70 PLN02735 carbamoyl-phosphate s 97.5 0.0019 4E-08 74.5 15.5 51 122-177 737-794 (1102)
71 PF01071 GARS_A: Phosphoribosy 97.5 0.002 4.2E-08 60.0 12.7 48 124-177 40-98 (194)
72 PLN02735 carbamoyl-phosphate s 97.4 0.0016 3.4E-08 75.0 13.9 49 123-177 181-237 (1102)
73 PRK12815 carB carbamoyl phosph 97.4 0.0013 2.8E-08 75.6 12.8 51 121-177 704-759 (1068)
74 PRK05294 carB carbamoyl phosph 97.3 0.002 4.4E-08 74.0 12.4 42 122-163 163-211 (1066)
75 TIGR02712 urea_carbox urea car 97.2 0.0063 1.4E-07 70.7 15.0 43 121-163 149-202 (1201)
76 PF15632 ATPgrasp_Ter: ATP-gra 97.1 0.0078 1.7E-07 60.5 13.0 27 297-323 259-285 (329)
77 COG0439 AccC Biotin carboxylas 97.1 0.015 3.3E-07 60.6 15.2 43 123-165 153-206 (449)
78 TIGR01369 CPSaseII_lrg carbamo 97.1 0.0099 2.1E-07 68.4 15.0 42 122-163 162-210 (1050)
79 COG4770 Acetyl/propionyl-CoA c 96.9 0.027 5.8E-07 59.6 14.9 157 121-348 151-321 (645)
80 PF02786 CPSase_L_D2: Carbamoy 96.8 0.027 5.9E-07 53.0 13.5 151 123-343 39-203 (211)
81 PF02222 ATP-grasp: ATP-grasp 96.7 0.095 2.1E-06 47.9 15.5 129 119-321 25-163 (172)
82 PRK12815 carB carbamoyl phosph 96.5 0.016 3.5E-07 66.7 11.4 42 122-163 163-211 (1068)
83 KOG2158|consensus 96.5 0.0011 2.4E-08 68.1 1.3 61 290-351 10-70 (565)
84 COG2232 Predicted ATP-dependen 96.1 0.033 7.2E-07 55.5 9.5 50 117-177 144-193 (389)
85 PF05770 Ins134_P3_kin: Inosit 96.0 0.11 2.4E-06 51.7 12.9 33 296-328 264-298 (307)
86 KOG0238|consensus 95.6 0.26 5.6E-06 51.8 13.5 159 121-349 147-318 (670)
87 COG0027 PurT Formate-dependent 95.4 0.11 2.4E-06 51.6 9.8 58 115-181 142-208 (394)
88 PF14403 CP_ATPgrasp_2: Circul 94.8 0.075 1.6E-06 55.4 7.2 82 115-202 331-426 (445)
89 KOG0369|consensus 94.8 0.19 4.2E-06 54.3 10.1 47 119-165 181-238 (1176)
90 COG0151 PurD Phosphoribosylami 94.7 0.52 1.1E-05 48.7 12.6 169 117-343 133-313 (428)
91 COG1038 PycA Pyruvate carboxyl 94.4 0.28 6.2E-06 54.1 10.6 136 119-321 155-301 (1149)
92 PF02750 Synapsin_C: Synapsin, 93.6 1.3 2.8E-05 41.3 11.8 66 108-180 36-106 (203)
93 COG0458 CarB Carbamoylphosphat 87.7 8.2 0.00018 39.9 12.1 42 122-163 150-198 (400)
94 COG2308 Uncharacterized conser 81.7 1.9 4.2E-05 44.8 4.5 83 117-202 360-456 (488)
95 PF04174 CP_ATPgrasp_1: A circ 80.7 1.7 3.7E-05 43.8 3.7 52 292-343 65-117 (330)
96 PHA02117 glutathionylspermidin 77.6 4.2 9E-05 42.1 5.5 56 124-180 309-367 (397)
97 TIGR02049 gshA_ferroox glutama 72.1 16 0.00035 37.4 7.9 89 121-224 256-362 (403)
98 COG1759 5-formaminoimidazole-4 68.8 73 0.0016 32.2 11.4 53 119-177 147-211 (361)
99 PF08886 GshA: Glutamate-cyste 61.1 13 0.00028 38.2 4.8 95 120-225 258-366 (404)
100 PRK10507 bifunctional glutathi 58.1 18 0.00039 39.7 5.5 57 123-180 528-588 (619)
101 PF07065 D123: D123; InterPro 53.9 65 0.0014 32.1 8.3 24 297-320 216-240 (299)
102 KOG3895|consensus 45.1 2.9E+02 0.0062 28.5 11.1 48 295-342 343-392 (488)
103 PF04174 CP_ATPgrasp_1: A circ 42.5 13 0.00028 37.6 1.4 29 117-145 282-310 (330)
104 COG2308 Uncharacterized conser 42.2 82 0.0018 33.2 7.1 56 291-346 141-197 (488)
105 PF14243 DUF4343: Domain of un 38.9 34 0.00074 29.7 3.3 26 297-322 94-119 (130)
106 COG0754 Gsp Glutathionylspermi 37.8 38 0.00082 34.6 3.8 43 123-165 297-343 (387)
107 PF04556 DpnII: DpnII restrict 37.3 27 0.00059 34.6 2.7 22 299-320 197-218 (286)
108 TIGR01016 sucCoAbeta succinyl- 34.2 93 0.002 31.7 6.2 61 123-188 41-123 (386)
109 PF14305 ATPgrasp_TupA: TupA-l 28.4 5.3E+02 0.011 24.6 12.7 30 294-324 194-223 (239)
110 PF07033 Orthopox_B11R: Orthop 25.9 43 0.00093 25.3 1.5 30 58-87 17-60 (71)
111 PHA02117 glutathionylspermidin 22.6 75 0.0016 33.0 3.0 25 297-321 107-133 (397)
112 PF13635 DUF4143: Domain of un 21.1 84 0.0018 25.0 2.5 19 299-317 71-89 (90)
113 KOG2983|consensus 20.2 5.6E+02 0.012 25.4 8.1 22 297-318 230-251 (334)
No 1
>KOG2156|consensus
Probab=100.00 E-value=3.4e-54 Score=432.65 Aligned_cols=306 Identities=34% Similarity=0.561 Sum_probs=245.9
Q ss_pred cccccccccccccccCCCCCCc------cccccccCCChhhhhccCcCeEEEeCCCCCCCCceEEEcchhhhhhhcccCc
Q psy2625 82 DSSNKTDVDIQRDDKHDGHKNK------ADKENERKPNVTTEVEENTPIYILKPCDGCQGKGIKLAMKIDDITSTMEFDS 155 (396)
Q Consensus 82 ~~~~~~~~~~~r~~~~~~f~~~------~~~~~~~~~~~~~~~~~~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~~~~ 155 (396)
.|+|+.-+++.|.+..+|-+.+ ..++++++......-+.....|||||.+++||-||.++++.+++.. +.+
T Consensus 259 GRKD~lW~~~~~~~~rf~~kef~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~pk---~rp 335 (662)
T KOG2156|consen 259 GRKDRLWRNILRNQVRFGKKEFGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFPK---DRP 335 (662)
T ss_pred ccchHHHHHHHHHHHHhcccccCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCCC---ccc
Confidence 4566666777776665544333 1222222222222223356679999999999999999999999988 889
Q ss_pred ceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccch
Q psy2625 156 MICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDL 235 (396)
Q Consensus 156 ~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~ 235 (396)
.|||+||++|+||+|.|||+|+||.|+|++||+||+|++|++|||+.+|.+. .+++.|.+||+|||+++|... |...+
T Consensus 336 LvvQ~yieRP~ling~KFDlrlYv~vts~nPLRIy~y~dgL~RFasvkYsp~-~a~~~dKymhltnYs~nke~~-ys~~k 413 (662)
T KOG2156|consen 336 LVVQKYIERPLLINGSKFDLRLYVVVTSVNPLRIYIYNDGLVRFASVKYSPF-DANNVDKYMHLTNYSPNKESN-YSLNK 413 (662)
T ss_pred HHHHHHhhcceeecCcceeEEEEEEEeecCceEEEEeccceeeeccccCCcc-cccccceeEEeccccccccch-hhhhh
Confidence 9999999999999999999999999999999999999999999999999975 578899999999999999777 43322
Q ss_pred -------hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccccccceeEeeeEEEecCCC
Q psy2625 236 -------SKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHC 308 (396)
Q Consensus 236 -------~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~ 308 (396)
++|++..+..++.+ .|.|.++||.+|+.+|++++++.++.+...++... .....|||||||||+||+++
T Consensus 414 ~~n~~~g~kwtl~~lw~~l~~-qGvdt~kIW~qir~iV~kti~s~E~~i~~~lr~~~---~~~~~CfELfgFDiilDedL 489 (662)
T KOG2156|consen 414 YFNACQGSKWTLKSLWLYLDN-QGVDTDKIWEQIRNIVIKTIISGEKGINSMLRNYV---ENPYSCFELFGFDIILDEDL 489 (662)
T ss_pred HHhhcCCchhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhccChhHHHHHHHHh---cCCchhhhhhcceEEecCcc
Confidence 89999999999999 99999999999999999999999999877766542 35678999999999999999
Q ss_pred CeEEEEeeCCCCCCCCCcchHHHHHHHHHHHHHhccCCccc-chhh-h-----------------hh-------------
Q psy2625 309 NPYLLEINKNASLKRPTSIDKIIKTNLTRDLFSILNLNESR-LRGD-I-----------------LR------------- 356 (396)
Q Consensus 309 kpWLLEVN~sPsl~~~s~~d~~vk~~li~D~l~lv~~~~~~-~~~~-~-----------------~~------------- 356 (396)
+|||||||-+||+++.+++|..+|.+|+.++|+++++.... ...+ . ++
T Consensus 490 kpwLlEVNISPSLhS~tpld~~vk~~li~~vlNlagi~~p~~~s~~~~a~~~~st~ri~~~~~~~e~l~K~~~~t~~~~d 569 (662)
T KOG2156|consen 490 KPWLLEVNISPSLHSETPLDCSVKAPLIQDVLNLAGIKVPPKPSTDSLAELSLSTKRITTDKLTREELIKHAAHTCKIED 569 (662)
T ss_pred ceeeEEEecccccccCCCccchhhhHHHHHHHHhcceecCCCccchhhhhhCCCccccccccccHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999998764331 1100 0 00
Q ss_pred --------hccchhhhhhhh--hhhccCCCCeEEEecCCChHHHhhhhcC
Q psy2625 357 --------DNLNYNTYKKHI--EYEINNRGDFNMIYPCTSQEQYERYIIE 396 (396)
Q Consensus 357 --------~~~~~~~~~~~~--~~e~~~~g~f~~iyP~~~~~~y~~~~~~ 396 (396)
+.+....+..+. +.|..++|.|+||||++-.+.|.+|+.+
T Consensus 570 q~ey~~il~~LtpddvR~Lv~aedEl~r~~~~erIFPt~~t~~yl~y~~~ 619 (662)
T KOG2156|consen 570 QEEYVLILDNLTPDDVRCLVEAEDELARRGDFERIFPTAITSPYLKYVEA 619 (662)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHhcccHhhhCCCcCccHHHHHhhh
Confidence 011111122222 2477899999999999999999999863
No 2
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=100.00 E-value=6e-54 Score=419.00 Aligned_cols=266 Identities=33% Similarity=0.594 Sum_probs=141.3
Q ss_pred cCccCCCcccccccccccccccccccccccccCCCCCCcccc----ccccCCChhhhh-ccCcCeEEEeCCCCCCCCceE
Q psy2625 65 NSPIEDNDNIKDKSSNQDSSNKTDVDIQRDDKHDGHKNKADK----ENERKPNVTTEV-EENTPIYILKPCDGCQGKGIK 139 (396)
Q Consensus 65 ~~~i~~~~~~~~~~sn~~~~~~~~~~~~r~~~~~~f~~~~~~----~~~~~~~~~~~~-~~~~~~WIvKP~~gs~GrGI~ 139 (396)
...+|+...||.|..+...++++....... ..+.|. +.+.. .+...+ ....+.||+||+++++|+||.
T Consensus 10 vN~~p~~~~l~~K~~l~~~l~~~~~~~~~~------~~~~p~t~~l~~~~~-~~~~~~~~~~~~~wI~KP~~~~rG~GI~ 82 (292)
T PF03133_consen 10 VNHFPGSQELTRKDLLAKNLQRYRKKFPKE------FDFYPETFILPQDYK-EFLKYFEKNPKNLWIVKPSNGSRGRGIK 82 (292)
T ss_dssp -TSS--EEEE-----------------------------------HHHHHH-HHHHHHHTTS---EEEEES-------EE
T ss_pred EccCCCCchhhhhHHHHHHHHHHHhhcCCc------ccCCcceEecHHHHH-HHHHHHhcCCCCEEEEeccccCCCCCce
Confidence 456899999999887777776664422211 112221 11111 122222 334479999999999999999
Q ss_pred EEcchhhhhh--hcccCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcceeEeecccCCCCCCCCCCCCcce
Q psy2625 140 LAMKIDDITS--TMEFDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGIVRLATEKYESPNETNIDNMYM 217 (396)
Q Consensus 140 lv~~~~~i~~--~~~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~vRfat~~Y~~~~~~nl~d~~~ 217 (396)
++++++++.+ .....++|||+||++|+|++|||||||+||||+|++||++|+|++|++|+|+++|+. ...++.+.++
T Consensus 83 l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~y~~g~vR~~~~~Y~~-~~~~~~~~~~ 161 (292)
T PF03133_consen 83 LFNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYLYKEGYVRFASEPYDP-DLDDLSDRFA 161 (292)
T ss_dssp EES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEEES--EEEE-SS---------------
T ss_pred ecCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeeeccCceEEeccceeec-cccccccccc
Confidence 9999999984 334789999999999999999999999999999999999999999999999999995 3577889999
Q ss_pred eeecccccCCCC---cccc--chhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccccc
Q psy2625 218 HLTNYSINKNSE---NFNE--DLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKPILREYLDTFKNYVYRE 292 (396)
Q Consensus 218 HLTN~sinK~~~---~~~~--~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~~l~~~~~~~~~~~~~~~ 292 (396)
||||+++||... .+.. ..++|++..+..+++. |.+++.+|++|..++.+++.++.. ..+......+.
T Consensus 162 HlTN~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~i~~~i~~~~~~~~~------~~~~~~~~~~~ 233 (292)
T PF03133_consen 162 HLTNYSIQKKSESNEEDSNEENGNKWSLDQFEEYLKE--GIDWEKIWEKICDIIIKTILAAEF------RSSQPNMPPRP 233 (292)
T ss_dssp ----------------------EEEHHHHHHHCTTTS--SS-STTTCHHHHHHHHHHHHHH-H------HHHH--TTSSS
T ss_pred cccccccccccccccccccccccccchhhhhhhhccc--CCCcccchhhhhHHHHHHhhhhhh------hhccccccccc
Confidence 999999999843 2211 1278999999999887 788899999999999999998841 11222345678
Q ss_pred cceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcchHHHHHHHHHHHHHhccCC
Q psy2625 293 ACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIKTNLTRDLFSILNLN 346 (396)
Q Consensus 293 ~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~d~~vk~~li~D~l~lv~~~ 346 (396)
+|||+||+|||||++++|||||||++|+++.+++.+..++.+|++|+|+++..+
T Consensus 234 ~~Fel~G~DfmlD~~~kpwLLEvN~~Psl~~~~~~~~~~~~~li~d~l~i~v~~ 287 (292)
T PF03133_consen 234 NCFELFGFDFMLDEDLKPWLLEVNSNPSLSTSTPVDKELKPQLIDDLLKIVVDP 287 (292)
T ss_dssp EE-EEEEEEEEEBTTS-EEEEEEESS------TTTHHHHHHHHHHHTTTTTS--
T ss_pred cccceeeeEEEecCCCeEEEeeCCCCCCcccCCHhHHHHHHHHHHHHhEEEeCC
Confidence 999999999999999999999999999999999999999999999999976544
No 3
>KOG2157|consensus
Probab=100.00 E-value=1.7e-42 Score=356.03 Aligned_cols=219 Identities=32% Similarity=0.516 Sum_probs=192.0
Q ss_pred ccCcCeEEEeCCCCCCCCceEEEcchhhhhhhc----------ccCcceeeccccCCccCCCcEEEEEEEEEEeccCceE
Q psy2625 119 EENTPIYILKPCDGCQGKGIKLAMKIDDITSTM----------EFDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLR 188 (396)
Q Consensus 119 ~~~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~----------~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~ 188 (396)
++..+.||+||++.++|+||.+++.++++..+. ..+.+++|+||++|++|+|+|||||.||+|++++||.
T Consensus 196 ~~~~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~~~pl~ 275 (497)
T KOG2157|consen 196 DSERSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTHFDPLL 275 (497)
T ss_pred ccccceEEeccccccccceeEEecchhhhhhhhhcccccccccccccceeeeeccCccccCCceeeeeEEEEeecccchh
Confidence 468999999999999999999999988876653 3568999999999999999999999999999999999
Q ss_pred EEEEcceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccc-----h-hhhhHHHHHHHHHHhcCCC---HHHHH
Q psy2625 189 IYIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNED-----L-SKQSLERMNKFLRDVHNVD---LNALY 259 (396)
Q Consensus 189 vy~y~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~-----~-~k~sl~~l~~~L~~~~g~d---~~~l~ 259 (396)
+|.|++|++|||+.+|.. .++++++++||||+++||..+++... + ++|++..|..|++. .|.. ....+
T Consensus 276 ~y~yreg~lRf~t~~y~~--~~nl~n~~~HLtN~siqK~~~~~~~~~s~~~~~~~w~~~~~~~yl~~-~~~~~~~~~~~i 352 (497)
T KOG2157|consen 276 LYRYREGFLRFSTEPYGP--LVNLQNMSVHLTNVSIQKLYPNYCHLSSLLSESCKWTLNSLLLYLRN-IGSPCLELKLQI 352 (497)
T ss_pred heeeccceEEEEeccCcc--hhhhcccchhhhccccccCCCCcccccccccCCCcccHHHHHHHHHh-hcCCcccccccc
Confidence 999999999999999996 68999999999999999999998754 2 89999999999998 4443 34455
Q ss_pred HHHHHHHHHHHHhccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcchHHHHHHHHHHH
Q psy2625 260 ARIHDIIVKTVLTGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIKTNLTRDL 339 (396)
Q Consensus 260 ~~I~~iI~~tl~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~d~~vk~~li~D~ 339 (396)
..+...|+..+.++.+.+ ....+|||+||+|||+|++++|||||||++|+++.++..|..++..++.|+
T Consensus 353 ~~~~~~iv~~v~~s~~~~-----------~~~~n~FElyG~DfliD~~lkpwLiEiNssP~~~~t~~~d~~l~~~l~~d~ 421 (497)
T KOG2157|consen 353 KPIITGIVLSVFASATTV-----------PSLANCFELYGFDFLIDEALKPWLIEINASPDLTQTTKNDARLKSKLIDDV 421 (497)
T ss_pred hhhhhhhhhhhhhhcccc-----------ccccchhhhhCcceeecCCCCeEEEEeecCCcccccchhhhHHHHHHHHHh
Confidence 666666666666665544 245789999999999999999999999999999999999999999999999
Q ss_pred HHhccCCcccch
Q psy2625 340 FSILNLNESRLR 351 (396)
Q Consensus 340 l~lv~~~~~~~~ 351 (396)
+.++.++..+++
T Consensus 422 l~~v~~~~~~~~ 433 (497)
T KOG2157|consen 422 LKVVVDPRLDPN 433 (497)
T ss_pred hccccCcccccc
Confidence 999988776544
No 4
>KOG2158|consensus
Probab=100.00 E-value=1.6e-40 Score=330.54 Aligned_cols=221 Identities=37% Similarity=0.601 Sum_probs=203.3
Q ss_pred ccCcCeEEEeCCCCCCCCceEEEcchhhhhhhcccCcceeeccccCCccC-CCcEEEEEEEEEEeccCceEEEEEcceeE
Q psy2625 119 EENTPIYILKPCDGCQGKGIKLAMKIDDITSTMEFDSMICQQYITNPLLW-NGYKFDIRFYVLITSVKHLRIYIYNEGIV 197 (396)
Q Consensus 119 ~~~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~~~~~IVQkYI~~PlLi-~GrKFDlRvyVLVts~~PL~vy~y~~g~v 197 (396)
.....++||||..|++|.||+++++...+.. ....++|+||..|||+ |+.|||+|+|++++|++||+||++++|++
T Consensus 223 ~~~KrtfivkpDsgaqg~giylisDir~~g~---~Q~~~vQeyV~~pLli~dkyKfd~rvy~likSvdPlsIfva~eGla 299 (565)
T KOG2158|consen 223 EIMKRTFIVKPDSGAQGSGIYLISDIREKGE---YQNKKVQEYVTYPLLISDKYKFDQRVYSLIKSVDPLSIFVASEGLA 299 (565)
T ss_pred HHhcccEEECCCCCCCCcceeeechhhhhhH---HHHHHHHHHhcccccccccceeeeeeeeeeeccCcceEEEeccchh
Confidence 3345599999999999999999987766655 5567999999999999 99999999999999999999999999999
Q ss_pred eecccCCCCCCCCCCCCcceeeecccccCCCCccccch------hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q psy2625 198 RLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDL------SKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVL 271 (396)
Q Consensus 198 Rfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~------~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~ 271 (396)
|||+++|..|+..|+++.+||||||++|+.+.+|...+ +++.++.+..+|.. .|.+...+|.+|+.++++|.+
T Consensus 300 RFcTeky~ePts~n~~~lymhlTnYslnk~nsny~hsd~sq~~gSkR~Lsti~~ql~s-~gvdtk~vwsDik~v~iktvl 378 (565)
T KOG2158|consen 300 RFCTEKYIEPTSANRSHLYMHLTNYSLNKPNSNYAHSDNSQVSGSKRQLSTINEQLDS-LGVDTKFVWSDIKIVFIKTVL 378 (565)
T ss_pred hhhhccccCCCcccHHHHHHHHHHhhhcCCCccccccCcccccchhHHHHHHHHHHHh-cCchHHHHHhhhhhhhcchhh
Confidence 99999999999999999999999999999999997422 78889999999999 999999999999999999999
Q ss_pred hccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcchHHHHHHHHHHHHHhccC
Q psy2625 272 TGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIKTNLTRDLFSILNL 345 (396)
Q Consensus 272 sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~d~~vk~~li~D~l~lv~~ 345 (396)
|+.|.+.++|..+++.+.....||+++|||+++++++.|.|+|||..|++.....+|.+. .++.++|+++..
T Consensus 379 A~~peLk~~y~~~fp~h~tgpacfqi~gfDi~~~~k~~pillevnrapslr~~~~vd~e~--~ll~~~~n~vs~ 450 (565)
T KOG2158|consen 379 AESPELKEDYIDNFPYHKTGPACFQIIGFDIVKQRKVLPILLEVNRAPSLRIWKVVDVEE--VLLYRIFNRVSN 450 (565)
T ss_pred hcCHHHHHHHHHhCCCCCcCCceEEEeccchhhccccchHHHHhcccccccccccCCCch--hHHHhhhhhhHH
Confidence 999999999999999999999999999999999999999999999999999988777665 788888887643
No 5
>KOG2155|consensus
Probab=99.94 E-value=3.7e-27 Score=233.88 Aligned_cols=213 Identities=24% Similarity=0.361 Sum_probs=168.3
Q ss_pred hhhhccCcCeEEEeCCCCCCCCceEEEcchhhhhhhcccCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcc
Q psy2625 115 TTEVEENTPIYILKPCDGCQGKGIKLAMKIDDITSTMEFDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNE 194 (396)
Q Consensus 115 ~~~~~~~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~ 194 (396)
+++..+.+++||+||++.+||....++.++.+|.+.+++++.|||+||++|+|+.|-|||||..||+.|++||++|+|+-
T Consensus 405 ~Rer~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~EtgPKiv~kYIe~P~LFr~gKFDlRYiVllrsi~Pl~~yvy~~ 484 (631)
T KOG2155|consen 405 NRERNGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIETGPKIVCKYIERPLLFRNGKFDLRYIVLLRSIAPLTAYVYNR 484 (631)
T ss_pred HHHhcCcCceEEechhhhhhcccchhhhhHHHHHHHHhcCchHHHHhcCCcceeecCccceEEEEEEccccchhhhheeh
Confidence 56889999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred eeEeecccCCCCCCCCCCCCcceeee--cccccCCCCccccchhhhhHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Q psy2625 195 GIVRLATEKYESPNETNIDNMYMHLT--NYSINKNSENFNEDLSKQSLERMNKFLRDVH-NVDLNALYARIHDIIVKTVL 271 (396)
Q Consensus 195 g~vRfat~~Y~~~~~~nl~d~~~HLT--N~sinK~~~~~~~~~~k~sl~~l~~~L~~~~-g~d~~~l~~~I~~iI~~tl~ 271 (396)
.++|||..+|+ ++|+.|...|+| ||-.- - ....-++|-..+++.+ -..+..+..+|..+|.+.+.
T Consensus 485 FWiRfsnn~fs---L~~f~dyEtHFTVmNY~~k-l--------~q~~ceeFi~~~ek~yp~~pw~dvq~~i~~aire~~e 552 (631)
T KOG2155|consen 485 FWIRFSNNEFS---LSNFEDYETHFTVMNYLEK-L--------LQMKCEEFIGEFEKGYPCFPWEDVQCSIVPAIREPFE 552 (631)
T ss_pred eeeeecCCccc---hhhhhhhhhhhhhhhHHHH-H--------hhccHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHh
Confidence 99999999998 789999999999 66310 0 0011223333333312 22356667777777777776
Q ss_pred hccchhhhhhhhhcccccccccceeEeeeEEEe--cCC--CCeEEEEeeCCCCCCCCCcchHHHHHHHHHHHHHhccCCc
Q psy2625 272 TGYKPILREYLDTFKNYVYREACFQLLGFDIIL--DSH--CNPYLLEINKNASLKRPTSIDKIIKTNLTRDLFSILNLNE 347 (396)
Q Consensus 272 sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~ll--D~~--~kpWLLEVN~sPsl~~~s~~d~~vk~~li~D~l~lv~~~~ 347 (396)
+|...- ..++ .....++..+||+|+|+ |.. ++|-|||||.+|++...|. .++.+..++|..+.++.
T Consensus 553 aaak~~-~e~g-----~a~~p~sramygvDlml~~~~~pVmq~qILEVNFnPDc~RACr----YhpdFfnnVFstLFLDe 622 (631)
T KOG2155|consen 553 AAAKLN-PECG-----AALLPNSRAMYGVDLMLAGDLTPVMQPQILEVNFNPDCKRACR----YHPDFFNNVFSTLFLDE 622 (631)
T ss_pred hhhccC-Cccc-----ccCCchhhhhhhheeeeccCCCccccceeEEEecCcchHHHhh----cChhHHHhHHHHhhccC
Confidence 664211 0011 11235677899999999 666 8899999999999999998 55689999999998876
Q ss_pred cc
Q psy2625 348 SR 349 (396)
Q Consensus 348 ~~ 349 (396)
.+
T Consensus 623 p~ 624 (631)
T KOG2155|consen 623 PS 624 (631)
T ss_pred CC
Confidence 43
No 6
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.92 E-value=6.3e-24 Score=205.30 Aligned_cols=216 Identities=19% Similarity=0.192 Sum_probs=160.7
Q ss_pred ccccccccccccccccccCCCCCCccccccccC-CChhhhhccCcCeEEEeCCCCCCCCceEEEcchh------------
Q psy2625 79 SNQDSSNKTDVDIQRDDKHDGHKNKADKENERK-PNVTTEVEENTPIYILKPCDGCQGKGIKLAMKID------------ 145 (396)
Q Consensus 79 sn~~~~~~~~~~~~r~~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~WIvKP~~gs~GrGI~lv~~~~------------ 145 (396)
=|...++||.+ ++.+..+...+.++|.+.... +....+|....+.-++||..|++|+||..++...
T Consensus 12 ~n~~~~~Kw~v-~~~L~~~~~l~~~LP~T~~~~~~~~l~~~L~~y~~vylKP~~Gs~G~gI~ri~~~~~~~~~~~~~~~~ 90 (262)
T PF14398_consen 12 FNPGFFDKWEV-YKALSRDPELRPYLPETELLTSFEDLREMLNKYKSVYLKPDNGSKGKGIIRIEKKGGGYRIQYRNKKK 90 (262)
T ss_pred eCCCCCCHHHH-HHHHHcCCcchhhCCCceEcCCHHHHHHHHHHCCEEEEEeCCCCCCccEEEEEEeCCEEEEEEccCCc
Confidence 35577999999 999999888888888875543 3566788889999999999999999999884322
Q ss_pred ----------hhhh----hcccCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcceeEeecccCCCCCCCCC
Q psy2625 146 ----------DITS----TMEFDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGIVRLATEKYESPNETN 211 (396)
Q Consensus 146 ----------~i~~----~~~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~vRfat~~Y~~~~~~n 211 (396)
++.. .+..++||||++|+ ...++|++||+|+.|+...... |...+..+|+|....-
T Consensus 91 ~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~-l~~~~gr~fD~RvlvqK~~~G~---W~vtg~~~Rva~~~~i------ 160 (262)
T PF14398_consen 91 NVRRTFSSLEELEQFLKELLGKRRYIIQQGIP-LATYDGRPFDFRVLVQKNGSGK---WQVTGIVARVAKPGSI------ 160 (262)
T ss_pred eeEEEeCCHHHHHHHHHHhcCCCcEEEeCCcc-ccccCCCeEEEEEEEEECCCCC---EEEEEEEEEEcCCCCc------
Confidence 2221 22467999999997 7888999999999999876444 9999999999977543
Q ss_pred CCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhhccccccc
Q psy2625 212 IDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKPILREYLDTFKNYVYR 291 (396)
Q Consensus 212 l~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~~l~~~~~~~~~~~~~~ 291 (396)
+||.+.+ ++...+.+.|... .....+..+|++++..+..+.+..+
T Consensus 161 -------vTN~~~G------------G~~~~~~~~l~~~--~~~~~~~~~l~~~a~~ia~~le~~~-------------- 205 (262)
T PF14398_consen 161 -------VTNLSQG------------GTALPFEEVLRQS--EEAEKIREELEDLALEIAQALEKHF-------------- 205 (262)
T ss_pred -------eeccCCC------------ceecCHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhc--------------
Confidence 5776543 3344455555552 2356677778877776666555332
Q ss_pred ccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcc-hHHHHHHHHHHHH
Q psy2625 292 EACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSI-DKIIKTNLTRDLF 340 (396)
Q Consensus 292 ~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~-d~~vk~~li~D~l 340 (396)
...|..+|+||.||.+|++||||||+.|+......+ ++.+..+++...+
T Consensus 206 ~~~~gElGiDl~iD~~g~iWliEvN~kP~~~~~~~~~~~~~~~~~~~~pl 255 (262)
T PF14398_consen 206 GGHLGELGIDLGIDKNGKIWLIEVNSKPGKFDFRDIGDKELIRQSYRRPL 255 (262)
T ss_pred CCceeEEEEEEEEcCCCCEEEEEEeCCCCcchhhcccchHHHHHHHHHHH
Confidence 122667799999999999999999999998877665 4555555555444
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.04 E-value=6.3e-10 Score=102.49 Aligned_cols=130 Identities=27% Similarity=0.459 Sum_probs=60.2
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEccee
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGI 196 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~ 196 (396)
....|+||..|+.|+|+.++++.+++...++ ..+.++|+||+.+ +| -|+|+||+-.. +. .++
T Consensus 39 ~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~~~~~~~Q~fI~~~---~g--~d~Rv~Vig~~-----vv---~a~ 105 (190)
T PF08443_consen 39 GFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRLENPILVQEFIPKD---GG--RDLRVYVIGGK-----VV---GAY 105 (190)
T ss_dssp -SSEEEE-SB-------EEEESHCHHHHHHH-----TTT-EEEE----S---S-----EEEEEETTE-----EE---EEE
T ss_pred CCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhccCcceEeccccCC---CC--cEEEEEEECCE-----EE---EEE
Confidence 4578999999999999999999888776532 4688999999733 22 59999988332 11 123
Q ss_pred Eeeccc-CCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc
Q psy2625 197 VRLATE-KYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYK 275 (396)
Q Consensus 197 vRfat~-~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~ 275 (396)
-|.++. .|. ||.+..- ...+-.+-+++.+++.++..+..
T Consensus 106 ~r~~~~~d~r--------------~n~~~g~-------------------------~~~~~~l~~e~~~~a~~~~~~lg- 145 (190)
T PF08443_consen 106 RRSSPEGDFR--------------TNLSRGG-------------------------KVEPYDLPEEIKELALKAARALG- 145 (190)
T ss_dssp E---------------------------------------------------------EE----HHHHHHHHHHHHHTT-
T ss_pred EEecCcccch--------------hhhccCc-------------------------eEEEecCCHHHHHHHHHHHHHhC-
Confidence 344332 122 3322110 00112234455556555444331
Q ss_pred hhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCC
Q psy2625 276 PILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRP 324 (396)
Q Consensus 276 ~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~ 324 (396)
..+.|+| +++.+..||++|||..|++...
T Consensus 146 -------------------l~~~giD-i~~~~~~~~v~EvN~~~~~~~~ 174 (190)
T PF08443_consen 146 -------------------LDFAGID-ILDTNDGPYVLEVNPNPGFRGI 174 (190)
T ss_dssp --------------------SEEEEE-EEEETTEEEEEEEETT---TTH
T ss_pred -------------------CCEEEEE-EEecCCCeEEEEecCCchHhHH
Confidence 2378999 5566678999999999999864
No 8
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.04 E-value=6.3e-09 Score=97.23 Aligned_cols=144 Identities=19% Similarity=0.276 Sum_probs=88.3
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEec---cCceEEEEE
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITS---VKHLRIYIY 192 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts---~~PL~vy~y 192 (396)
-.-.+||||..+..+.||.++++.+++...+. +.+++||+||+ |+.|-+-+ +-.. .-|..-..+
T Consensus 32 l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI~------G~E~tv~v--l~~~~~~~~~~~ei~~ 103 (203)
T PF07478_consen 32 LGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKYDDDVLVEEFIS------GREFTVGV--LGNGEPRVLPPVEIVF 103 (203)
T ss_dssp HSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE--S------SEEEEEEE--EESSSTEEEEEEEEEE
T ss_pred cCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhhcceEEEEeeec------ccceEEEE--EecCCcccCceEEEEc
Confidence 34589999999999999999999988776542 56899999997 99665554 3321 112223334
Q ss_pred cceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q psy2625 193 NEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLT 272 (396)
Q Consensus 193 ~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~s 272 (396)
..++..+..+ |.. . +....+.+. ..-.+.+.++|++++.+++.+
T Consensus 104 ~~~~~d~~~K-y~~---~--~~~~~~~~p------------------------------a~l~~~~~~~i~~~a~~a~~~ 147 (203)
T PF07478_consen 104 PSEFYDYEAK-YQP---A--DSETEYIIP------------------------------ADLSEELQEKIKEIAKKAFKA 147 (203)
T ss_dssp SSSEEEHHHH-HSG---C--CSCEEEESS-------------------------------SS-HHHHHHHHHHHHHHHHH
T ss_pred CCCceehhhe-ecc---C--CCceEEEec------------------------------CCCCHHHHHHHHHHHHHHHHH
Confidence 4433333322 321 0 000011110 011245677777777666654
Q ss_pred ccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcc
Q psy2625 273 GYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSI 327 (396)
Q Consensus 273 a~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~ 327 (396)
. +|-..-.+||.+|++++||+||||+.|+|+..+.+
T Consensus 148 l-------------------g~~~~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~ 183 (203)
T PF07478_consen 148 L-------------------GCRGYARIDFRVDEDGKPYFLEINTIPGLTPTSLF 183 (203)
T ss_dssp T-------------------TTCSEEEEEEEEETTTEEEEEEEESS-G-STTSHH
T ss_pred H-------------------cCCCceeEEEEeccCCceEEEeccCcccccCCCHH
Confidence 3 35557799999999999999999999999987654
No 9
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.02 E-value=8.7e-09 Score=102.94 Aligned_cols=142 Identities=18% Similarity=0.219 Sum_probs=86.6
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEccee
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGI 196 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~ 196 (396)
.-.||+||..++.|.||.++.+.+++...+. +..++||+||+ |+ ++++-++.. ++ .+.. -+.
T Consensus 162 ~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~------G~--E~~v~vl~~--~~-~~~~--~~e 228 (333)
T PRK01966 162 GLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK------GR--EIECAVLGN--DP-KASV--PGE 228 (333)
T ss_pred CCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC------CE--EEEEEEECC--CC-eEcc--cEE
Confidence 4579999999999999999999988866442 46899999997 86 566666643 21 1111 111
Q ss_pred EeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch
Q psy2625 197 VRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKP 276 (396)
Q Consensus 197 vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~~ 276 (396)
+.....-|+... .-......|.+.. .-.+.+..+|++++.+++.+.
T Consensus 229 i~~~~~~~d~~~-ky~~~~~~~~~Pa------------------------------~l~~~~~~~i~~~a~~~~~aL--- 274 (333)
T PRK01966 229 IVKPDDFYDYEA-KYLDGSAELIIPA------------------------------DLSEELTEKIRELAIKAFKAL--- 274 (333)
T ss_pred EecCCceEcHHH-ccCCCCceEEeCC------------------------------CCCHHHHHHHHHHHHHHHHHh---
Confidence 111111111000 0000001111111 012345666666666655543
Q ss_pred hhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCc
Q psy2625 277 ILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTS 326 (396)
Q Consensus 277 l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~ 326 (396)
+|-...++||++|.+++||+||||+.|++...+-
T Consensus 275 ----------------g~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~~s~ 308 (333)
T PRK01966 275 ----------------GCSGLARVDFFLTEDGEIYLNEINTMPGFTPISM 308 (333)
T ss_pred ----------------CCcceEEEEEEEcCCCCEEEEEeeCCCCCCcccH
Confidence 2445789999999999999999999999987654
No 10
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.00 E-value=1.4e-08 Score=101.91 Aligned_cols=142 Identities=14% Similarity=0.159 Sum_probs=84.0
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEE-----EEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRI-----YIY 192 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~v-----y~y 192 (396)
-.||+||..++.+.||.++++.+++...+. +.+++||+||+ |+.+.+-+ +... +.+.+ ...
T Consensus 166 ~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~------G~E~sv~v--l~~~-~~~~~~~~~~i~~ 236 (343)
T PRK14568 166 YPVFVKPARSGSSFGVSKVNSADELDYAIESARQYDSKVLIEEAVV------GSEVGCAV--LGNG-ADLVVGEVDQIRL 236 (343)
T ss_pred CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC------CEEEEEEE--EcCC-CCcceecceEEec
Confidence 479999999999999999999988865432 45789999997 88665433 3221 11111 111
Q ss_pred cceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q psy2625 193 NEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLT 272 (396)
Q Consensus 193 ~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~s 272 (396)
.+++.+...+ |.... . .....|++. ..-.+.+.++|++++.+++.+
T Consensus 237 ~~~~~~~~~k-~~~~~-g--~~~~~~~~P------------------------------a~l~~~~~~~i~~~a~~~~~~ 282 (343)
T PRK14568 237 SHGFFRIHQE-NEPEK-G--SENSTIIVP------------------------------ADISAEERSRVQETAKAIYRA 282 (343)
T ss_pred CCCccchhhh-hcccc-C--CCCeeEEeC------------------------------CCCCHHHHHHHHHHHHHHHHH
Confidence 1111111100 10000 0 000001110 001234556666666555543
Q ss_pred ccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCc
Q psy2625 273 GYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTS 326 (396)
Q Consensus 273 a~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~ 326 (396)
. +|..+.++||++|+++++||+|||+.|++...+.
T Consensus 283 L-------------------g~~G~~rvDf~l~~~g~~~llEINt~Pg~t~~S~ 317 (343)
T PRK14568 283 L-------------------GCRGLARVDMFLQEDGTVVLNEVNTLPGFTSYSR 317 (343)
T ss_pred h-------------------CCCcEEEEEEEEeCCCCEEEEEeeCCCCCCccCH
Confidence 3 3556889999999999999999999999987653
No 11
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.96 E-value=3.6e-09 Score=104.04 Aligned_cols=53 Identities=30% Similarity=0.471 Sum_probs=41.3
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhc-----ccCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTM-----EFDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----~~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
-.+|+||..|+.|+|+.++++.+++...+ .+.+++||+||+.+ .| .|+|+.|+
T Consensus 136 ~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~~~---~g--~d~rv~vi 193 (300)
T PRK10446 136 APLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEA---QG--CDIRCLVV 193 (300)
T ss_pred CCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeeccC---CC--ceEEEEEE
Confidence 47999999999999999998877655432 14579999999621 24 59999876
No 12
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=98.94 E-value=4.4e-09 Score=100.88 Aligned_cols=52 Identities=29% Similarity=0.369 Sum_probs=41.6
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc--------cCcceeeccccCCccCCCcE-EEEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME--------FDSMICQQYITNPLLWNGYK-FDIRFYVL 180 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~--------~~~~IVQkYI~~PlLi~GrK-FDlRvyVL 180 (396)
-.+|+||..|+.|+|+.++++.+++...+. ..++++|+||+ |.. +|+|++++
T Consensus 124 ~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~------~~~~~~~rv~v~ 184 (277)
T TIGR00768 124 FPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIK------KPGGRDIRVFVV 184 (277)
T ss_pred CCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeec------CCCCceEEEEEE
Confidence 489999999999999999999887754321 13799999997 443 69999875
No 13
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=98.94 E-value=2.5e-08 Score=97.87 Aligned_cols=143 Identities=18% Similarity=0.279 Sum_probs=84.5
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEccee
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGI 196 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~ 196 (396)
.-.||+||..++.|+|+.++.+.+++...+. ...++||+||+ |+ ++++-|+...-.+ .++-..+
T Consensus 125 ~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~------G~--E~sv~vl~~~~~~-~vl~~~e-- 193 (299)
T PRK14571 125 GYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPRYGSVIVQEYIP------GR--EMTVSILETEKGF-EVLPILE-- 193 (299)
T ss_pred CCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhhCCcEEEEcccc------ce--EEEEEEEcCCCCe-eeeceEE--
Confidence 3479999999999999999999888765432 35789999996 76 7777666543211 1111100
Q ss_pred EeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhccc
Q psy2625 197 VRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVD-LNALYARIHDIIVKTVLTGYK 275 (396)
Q Consensus 197 vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d-~~~l~~~I~~iI~~tl~sa~~ 275 (396)
.+....-|+ +-++|.-.. ..+. ...+ .+.+..+|++++.+++.+.
T Consensus 194 ~~~~~~~~~------------~~~k~~~g~--~~~~------------------~p~~l~~~~~~~i~~~a~~~~~~l-- 239 (299)
T PRK14571 194 LRPKRRFYD------------YVAKYTKGE--TEFI------------------LPAPLNPEEERLVKETALKAFVEA-- 239 (299)
T ss_pred EecCCCccc------------cccccCCCC--eeEE------------------eCCCCCHHHHHHHHHHHHHHHHHh--
Confidence 110000000 000110000 0000 0001 1345566666665555432
Q ss_pred hhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcc
Q psy2625 276 PILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSI 327 (396)
Q Consensus 276 ~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~ 327 (396)
+|....++||+++ +++||++|||..|+++..+.+
T Consensus 240 -----------------g~~g~~rvD~~~~-~~~~~viEiN~~Pg~~~~s~~ 273 (299)
T PRK14571 240 -----------------GCRGFGRVDGIFS-DGRFYFLEINTVPGLTELSDL 273 (299)
T ss_pred -----------------CCCceEEEEEEEE-CCcEEEEEeeCCCCCCccCHH
Confidence 3445889999998 579999999999999987643
No 14
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.93 E-value=3.6e-08 Score=96.99 Aligned_cols=138 Identities=17% Similarity=0.256 Sum_probs=82.2
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcceeEe
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGIVR 198 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~vR 198 (396)
-.+|+||..++.|.|+.++.+.+++...+. ..+++||+||+ |+ ++++.|+-...-+ .+++ .
T Consensus 131 ~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~~~~~lvEefI~------G~--E~tv~vl~~~~~~-~~~i------~ 195 (296)
T PRK14569 131 FPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYGEVMIEQWVT------GK--EITVAIVNDEVYS-SVWI------E 195 (296)
T ss_pred CCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHhcCCEEEEcccc------cE--EEEEEEECCcCcc-eEEE------e
Confidence 469999999999999999999988865442 35789999996 87 5555554221111 1111 1
Q ss_pred ecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhh
Q psy2625 199 LATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKPIL 278 (396)
Q Consensus 199 fat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~~l~ 278 (396)
....-|+.. ........|.+- ... .+.+..+|++++.+++.+.
T Consensus 196 ~~~~~~~~~--~k~~~~~~~~~P-----------------------------~~l-~~~~~~~i~~~a~~~~~~L----- 238 (296)
T PRK14569 196 PQNEFYDYE--SKYSGKSIYHSP-----------------------------SGL-CEQKELEVRQLAKKAYDLL----- 238 (296)
T ss_pred cCCCcCChh--hccCCCcEEEeC-----------------------------CCC-CHHHHHHHHHHHHHHHHHh-----
Confidence 111101100 000000000000 001 1234455666655554432
Q ss_pred hhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCc
Q psy2625 279 REYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTS 326 (396)
Q Consensus 279 ~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~ 326 (396)
+|-...++||++|.+++||++|||..|++..++-
T Consensus 239 --------------g~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~ 272 (296)
T PRK14569 239 --------------GCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSL 272 (296)
T ss_pred --------------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCCcCH
Confidence 3556889999999999999999999999987754
No 15
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=98.92 E-value=9.2e-09 Score=102.10 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCC
Q psy2625 257 ALYARIHDIIVKTVLTGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLK 322 (396)
Q Consensus 257 ~l~~~I~~iI~~tl~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~ 322 (396)
..|+++.+++.++..+. +| .++|+||++|.++.||+||||+.|++.
T Consensus 228 p~~~el~~la~~A~~~~-------------------g~-~~~GvDii~~~~~g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 228 PHWERLLELAASCWELT-------------------GL-GYMGVDMVLDKEEGPLVLELNARPGLA 273 (317)
T ss_pred hhHHHHHHHHHHHHHhc-------------------CC-CeEEEEEEEeCCCCEEEEEeCCCCCCC
Confidence 45788887776655431 24 588999999988999999999999997
No 16
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.92 E-value=6.8e-08 Score=94.62 Aligned_cols=140 Identities=18% Similarity=0.266 Sum_probs=82.0
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEccee
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGI 196 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~ 196 (396)
.-.||+||..++.|+|+.++.+.+++...+. ...++||+||+ |+ ++++.|+-...-|........+.
T Consensus 133 ~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~------G~--E~~v~vi~~~~~~~~~~~~~~~~ 204 (304)
T PRK01372 133 GLPLVVKPAREGSSVGVSKVKEEDELQAALELAFKYDDEVLVEKYIK------GR--ELTVAVLGGKALPVIEIVPAGEF 204 (304)
T ss_pred CCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEcccC------CE--EEEEEEECCCccceEEEEecCCE
Confidence 4469999999999999999999888765431 46789999996 76 66776553321121111111111
Q ss_pred EeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch
Q psy2625 197 VRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKP 276 (396)
Q Consensus 197 vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~~ 276 (396)
.-+. .+|.. ....+.+. ... .+.+..+|++++.+.+.+..
T Consensus 205 ~~~~-~~~~~-------g~~~~~~p-----------------------------~~~-~~~~~~~l~~~a~~~~~~lg-- 244 (304)
T PRK01372 205 YDYE-AKYLA-------GGTQYICP-----------------------------AGL-PAEIEAELQELALKAYRALG-- 244 (304)
T ss_pred Eeee-ccccC-------CCeEEEeC-----------------------------CCC-CHHHHHHHHHHHHHHHHHhC--
Confidence 0000 00100 00001110 001 13345556655554443321
Q ss_pred hhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCc
Q psy2625 277 ILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTS 326 (396)
Q Consensus 277 l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~ 326 (396)
+....++||++|.+++||+||||..|++...+.
T Consensus 245 -----------------~~g~~~iD~~~~~~g~~~viEvN~~p~~~~~~~ 277 (304)
T PRK01372 245 -----------------CRGWGRVDFMLDEDGKPYLLEVNTQPGMTSHSL 277 (304)
T ss_pred -----------------CcceEEEEEEEcCCCCEEEEEecCCCCCCcccH
Confidence 223679999999999999999999999987653
No 17
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.3e-08 Score=101.30 Aligned_cols=130 Identities=26% Similarity=0.366 Sum_probs=86.1
Q ss_pred CeEEEeCCCCCCCCceEEEcchh-hhhhhcc------cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcce
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKID-DITSTME------FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEG 195 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~-~i~~~~~------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g 195 (396)
..-|+||..|++|+||+.+++.+ ++....+ ...+++|+||+.| + =|.|.++++... |..+| .
T Consensus 156 ~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~----~--~~~rrivv~~~~-~~~~y----~ 224 (318)
T COG0189 156 FPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKA----K--RDDRRVLVGGGE-VVAIY----A 224 (318)
T ss_pred CCEEEeeCCCCCccceEEecCCChhHHHHHHHHhccccceEehhhhcCcc----c--CCcEEEEEeCCE-EeEEe----e
Confidence 78999999999999999999988 6655432 2359999999855 2 266777776542 44444 6
Q ss_pred eEeeccc-CCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q psy2625 196 IVRLATE-KYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGY 274 (396)
Q Consensus 196 ~vRfat~-~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~ 274 (396)
+.|.+.. .|. ||.+.+-. ..+.++=++++++++++..+.
T Consensus 225 ~~R~~~~~~~R--------------~N~a~Gg~-------------------------~e~~~l~~e~~elA~kaa~~l- 264 (318)
T COG0189 225 LARIPASGDFR--------------SNLARGGR-------------------------AEPCELTEEEEELAVKAAPAL- 264 (318)
T ss_pred eccccCCCCce--------------eecccccc-------------------------ccccCCCHHHHHHHHHHHHHh-
Confidence 6776533 222 44443311 112233445555655544333
Q ss_pred chhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCC
Q psy2625 275 KPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKR 323 (396)
Q Consensus 275 ~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~ 323 (396)
-..++|+||+.+ +...+++|||.+|++..
T Consensus 265 -------------------Gl~~~GVDiie~-~~g~~V~EVN~sP~~~~ 293 (318)
T COG0189 265 -------------------GLGLVGVDIIED-KDGLYVTEVNVSPTGKG 293 (318)
T ss_pred -------------------CCeEEEEEEEec-CCCcEEEEEeCCCcccc
Confidence 123889999999 67899999999998766
No 18
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.90 E-value=6.4e-08 Score=95.18 Aligned_cols=140 Identities=17% Similarity=0.187 Sum_probs=84.4
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhc-----ccCcceeeccccCCccCCCcEEEEEEEEEEecc-CceEEEEEcc
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTM-----EFDSMICQQYITNPLLWNGYKFDIRFYVLITSV-KHLRIYIYNE 194 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~-~PL~vy~y~~ 194 (396)
-.-.+|+||..++.|+||.++.+.+++...+ ...+++||+||+ |+ ++++.++...- -|.... ..+
T Consensus 145 ~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~------G~--e~~v~vi~~~~~~~~~~~-~~~ 215 (315)
T TIGR01205 145 LGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEYDEEVLVEQFIK------GR--ELEVSILGNEEALPIIEI-VPE 215 (315)
T ss_pred cCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCCC------CE--EEEEEEECCCCccceEEe-cCC
Confidence 3457999999999999999999988876543 245789999995 87 77777765321 011100 000
Q ss_pred e--eEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q psy2625 195 G--IVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLT 272 (396)
Q Consensus 195 g--~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~s 272 (396)
. +..+. .+|.. ....+.+. ... .+.+..+|++++.+.+.+
T Consensus 216 ~~~~~~~~-~~~~~-------~~~~~~~p-----------------------------~~l-~~~~~~~i~~~a~~~~~~ 257 (315)
T TIGR01205 216 IEGFYDYE-AKYLD-------GSTEYVIP-----------------------------APL-DEELEEKIKELALKAYKA 257 (315)
T ss_pred CCCeeCcc-cccCC-------CCeeEEeC-----------------------------CCC-CHHHHHHHHHHHHHHHHH
Confidence 0 00000 01110 00000000 001 133455666666555544
Q ss_pred ccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCc
Q psy2625 273 GYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTS 326 (396)
Q Consensus 273 a~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~ 326 (396)
.. +...+++||++|.+++||+||||..|++...+.
T Consensus 258 lg-------------------~~G~~~vD~~~~~~g~~~viEvN~~pg~~~~s~ 292 (315)
T TIGR01205 258 LG-------------------CRGLARVDFFLDEEGEIYLNEINTIPGMTAISL 292 (315)
T ss_pred hC-------------------CCceEEEEEEEeCCCCEEEEEeeCCCCCCCccH
Confidence 32 234789999999999999999999999988654
No 19
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.88 E-value=4.3e-09 Score=94.53 Aligned_cols=53 Identities=25% Similarity=0.471 Sum_probs=23.9
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhcccCcceeeccccCCccCCCcEEEEEEEEEEe
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTMEFDSMICQQYITNPLLWNGYKFDIRFYVLIT 182 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVt 182 (396)
....||+||..|+.|.||.++++.+++...... ..++|+||+ |..+- +.++..
T Consensus 30 ~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~-~~i~Qe~i~------G~~~S--v~~l~~ 82 (161)
T PF02655_consen 30 IDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNK-LRIVQEFIE------GEPYS--VSFLAS 82 (161)
T ss_dssp -SSSEEEEESS-------B--SS--TTE--------EEEE---------SEEEE--EEEEE-
T ss_pred cCCcEEEEeCCCCCCCCeEEECCchhhcccccc-ceEEeeeeC------CEEeE--EEEEEe
Confidence 478999999999999999999998877654322 239999998 88665 444443
No 20
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=98.84 E-value=1.3e-07 Score=95.17 Aligned_cols=147 Identities=13% Similarity=0.154 Sum_probs=84.6
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccC-ceEEEEEcce
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVK-HLRIYIYNEG 195 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~-PL~vy~y~~g 195 (396)
.-.+|+||..++.+.||.++.+.+++...+. ..++|||+||+ |+ ++++-|+....+ ....+...-.
T Consensus 171 ~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~------G~--E~sv~vi~~~~~g~~~~~~l~~~ 242 (347)
T PRK14572 171 GFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS------GT--EVSCGVLERYRGGKRNPIALPAT 242 (347)
T ss_pred CCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc------cE--EEEEEEEeCccCCCCCceecccE
Confidence 3479999999999999999999988766442 35789999997 87 555555542110 0000111111
Q ss_pred eEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc
Q psy2625 196 IVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYK 275 (396)
Q Consensus 196 ~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~ 275 (396)
-++....-|+-.. .-......|++... . .+.+.++|++++.+++.+.
T Consensus 243 ei~~~~~~~d~~~-ky~~~~~~~~~Pa~-----------------------------l-~~~~~~~i~~~a~~~~~~L-- 289 (347)
T PRK14572 243 EIVPGGEFFDFES-KYKQGGSEEITPAR-----------------------------I-SDQEMKRVQELAIRAHESL-- 289 (347)
T ss_pred EEecCCCccCHHH-ccCCCCeEEEECCC-----------------------------C-CHHHHHHHHHHHHHHHHHh--
Confidence 1111111011000 00000011122110 1 2345666776665555332
Q ss_pred hhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcc
Q psy2625 276 PILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSI 327 (396)
Q Consensus 276 ~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~ 327 (396)
+|....++||+++ +++||++|||+.|++...+-+
T Consensus 290 -----------------g~~G~~rvD~~~~-~~~~~vlEiNt~PG~t~~S~~ 323 (347)
T PRK14572 290 -----------------GCKGYSRTDFIIV-DGEPHILETNTLPGMTETSLI 323 (347)
T ss_pred -----------------CCcceeEEEEEEE-CCcEEEEeeeCCCCCCcccHH
Confidence 2556889999997 579999999999999887544
No 21
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=98.82 E-value=2.3e-08 Score=96.57 Aligned_cols=52 Identities=33% Similarity=0.550 Sum_probs=40.8
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhc---------ccCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTM---------EFDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~---------~~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
-.+|+||..|+.|+|+.++.+.+++...+ ...++++|+||+.| | .|+|++++
T Consensus 123 ~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~----~--~d~~v~vi 183 (280)
T TIGR02144 123 YPVVLKPVIGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKP----G--RDIRVFVI 183 (280)
T ss_pred CCEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCC----C--CceEEEEE
Confidence 35899999999999999999887765422 12468999999733 3 58999886
No 22
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=98.81 E-value=1.7e-07 Score=95.00 Aligned_cols=148 Identities=18% Similarity=0.196 Sum_probs=87.9
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEccee
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGI 196 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~ 196 (396)
.-.+||||..++.|.||.++.+.+++...+. +..++||+||+ |+ ++++-|+-.. ...++. -+-
T Consensus 171 g~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~------Gr--Ei~v~Vlg~~--~~~v~~--~~E 238 (364)
T PRK14570 171 GYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE------AR--EIECSVIGNE--QIKIFT--PGE 238 (364)
T ss_pred CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC------CE--EEEEEEECCC--CceEee--eEE
Confidence 4579999999888999999999888776432 35689999997 87 6676666321 122222 222
Q ss_pred EeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch
Q psy2625 197 VRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKP 276 (396)
Q Consensus 197 vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~~ 276 (396)
+.+....|. +.+..+......+. .+.- ...-.+++.++|++++.++..+.
T Consensus 239 i~~~~~~f~-----dy~~Ky~~~~~~~~-----~~~~-----------------Pa~l~~e~~~~i~~~A~~~~~aL--- 288 (364)
T PRK14570 239 IVVQDFIFY-----DYDAKYSTIPGNSI-----VFNI-----------------PAHLDTKHLLDIKEYAFLTYKNL--- 288 (364)
T ss_pred EEeCCCCcc-----CHHHhcCCCCCCce-----EEEC-----------------CCCCCHHHHHHHHHHHHHHHHHh---
Confidence 222111110 00000000000000 0000 00012455667777766655543
Q ss_pred hhhhhhhhcccccccccceeEeeeEEEecC-CCCeEEEEeeCCCCCCCCCcc
Q psy2625 277 ILREYLDTFKNYVYREACFQLLGFDIILDS-HCNPYLLEINKNASLKRPTSI 327 (396)
Q Consensus 277 l~~~~~~~~~~~~~~~~~FEl~G~D~llD~-~~kpWLLEVN~sPsl~~~s~~ 327 (396)
+|..+..+||++|. +++||++|||+.|+|...+.+
T Consensus 289 ----------------g~~G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~S~~ 324 (364)
T PRK14570 289 ----------------ELRGMARIDFLIEKDTGLIYLNEINTIPGFTDISMF 324 (364)
T ss_pred ----------------CCcceEEEEEEEECCCCcEEEEEeeCCCCCCcccHH
Confidence 46678899999996 599999999999999887644
No 23
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=98.77 E-value=1.6e-07 Score=93.78 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=45.8
Q ss_pred cCcCeEEEeCCCC---CCCCceEEEcchhhhhhhcccCcceeeccccCCccCCCcEEEEEEEEEEec
Q psy2625 120 ENTPIYILKPCDG---CQGKGIKLAMKIDDITSTMEFDSMICQQYITNPLLWNGYKFDIRFYVLITS 183 (396)
Q Consensus 120 ~~~~~WIvKP~~g---s~GrGI~lv~~~~~i~~~~~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts 183 (396)
+-+-.-|+||..| +.|+|+.++.+.+.+.. + ..++++|+||..| |+ |+|+||+-..
T Consensus 150 ~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~-l-~~p~~lQEfVnh~----g~--d~RVfVvGd~ 208 (328)
T PLN02941 150 GLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSK-L-EPPLVLQEFVNHG----GV--LFKVYVVGDY 208 (328)
T ss_pred cCCCCEEEeecccCCCccccceEEecCHHHHHh-c-CCcEEEEEecCCC----CE--EEEEEEECCE
Confidence 3344689999999 99999999999888766 2 2479999999876 65 9999998553
No 24
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.74 E-value=1.2e-07 Score=85.06 Aligned_cols=53 Identities=21% Similarity=0.446 Sum_probs=40.2
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc---------cCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME---------FDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~---------~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
...||+||..|+.|+|+.++++.+++...+. ...+|+|+||+ |.-+.+++++.
T Consensus 39 ~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~~~~~~~ivqe~i~------g~e~~~~~~~~ 100 (184)
T PF13535_consen 39 GFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSPLGNGPVIVQEYIP------GDEYSVDGVVD 100 (184)
T ss_dssp SSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS-HSSSEEEEE---------SEEEEEEEEEE
T ss_pred CCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcccCCccEEEEEeee------eeeEEEEEEEE
Confidence 3689999999999999999999988876532 24799999997 88888888776
No 25
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.70 E-value=1.7e-07 Score=92.02 Aligned_cols=170 Identities=16% Similarity=0.289 Sum_probs=95.2
Q ss_pred hhccCc--CeEEEeCCCCCCCCceEEEcchhh---------hhhhc-ccC--cceeeccccCCccCC----CcEEEEEEE
Q psy2625 117 EVEENT--PIYILKPCDGCQGKGIKLAMKIDD---------ITSTM-EFD--SMICQQYITNPLLWN----GYKFDIRFY 178 (396)
Q Consensus 117 ~~~~~~--~~WIvKP~~gs~GrGI~lv~~~~~---------i~~~~-~~~--~~IVQkYI~~PlLi~----GrKFDlRvy 178 (396)
++.... ...++||+.|++|+||.++...+. +.... ... .||||++|..=-.+. .--=+||+.
T Consensus 66 ~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvv 145 (285)
T PF14397_consen 66 EFLRKHAPDRFVIKPANGSGGKGILVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVV 145 (285)
T ss_pred HHHHhccCCcEEEEeCCCCCccCEEEEEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEE
Confidence 344444 899999999999999999975441 11111 122 899999997322222 233589998
Q ss_pred EEEeccCceEEEEEcceeEeecccCCCCCCCCCCC--------Ccceeeeccc-ccCCCCcccc-chhhhhHHHHHHHHH
Q psy2625 179 VLITSVKHLRIYIYNEGIVRLATEKYESPNETNID--------NMYMHLTNYS-INKNSENFNE-DLSKQSLERMNKFLR 248 (396)
Q Consensus 179 VLVts~~PL~vy~y~~g~vRfat~~Y~~~~~~nl~--------d~~~HLTN~s-inK~~~~~~~-~~~k~sl~~l~~~L~ 248 (396)
.++.. + .++ .-..+.|++...-. .+|+. |....++.++ .......|.. +++...+
T Consensus 146 T~~~~-~--~~~-~~~a~lRlg~~~~~---~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~-------- 210 (285)
T PF14397_consen 146 TFLDD-G--EVE-VLMAMLRLGRGGSG---VDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPF-------- 210 (285)
T ss_pred EEEeC-C--eeE-EEEEEEEeCCCCCc---ccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCcc--------
Confidence 87664 2 222 22456677633222 22322 1111133332 1112222211 1121111
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCC--CCCCCC
Q psy2625 249 DVHNVDLNALYARIHDIIVKTVLTGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKN--ASLKRP 324 (396)
Q Consensus 249 ~~~g~d~~~l~~~I~~iI~~tl~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~s--Psl~~~ 324 (396)
.|..+ .-|+++.+++.++... .|. +..+|.|+.||+++ |.|||.|+. |++...
T Consensus 211 --~g~~I-P~w~~~~~l~~~~~~~-~p~------------------~~~iGWDvait~~G-p~llE~N~~~~pgl~~~ 265 (285)
T PF14397_consen 211 --SGFQI-PNWDEILELAKEAHRK-FPG------------------LGYIGWDVAITEDG-PVLLEGNARWDPGLMIQ 265 (285)
T ss_pred --CCccC-CCHHHHHHHHHHHHHH-CCC------------------CCeEEEEEEEcCCC-cEEEEeeCCCCCCcHhh
Confidence 22222 2377777776554332 222 33889999999999 999999999 998743
No 26
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.61 E-value=4.8e-07 Score=93.86 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=39.6
Q ss_pred ceeEeeeEEEec-CCCCeEEEEeeCCCCCCCCCcchHHHHHHHHHHHHHhcc
Q psy2625 294 CFQLLGFDIILD-SHCNPYLLEINKNASLKRPTSIDKIIKTNLTRDLFSILN 344 (396)
Q Consensus 294 ~FEl~G~D~llD-~~~kpWLLEVN~sPsl~~~s~~d~~vk~~li~D~l~lv~ 344 (396)
...++.+|||++ +++.||+||+|+.|+......+...+..+|++-++.++.
T Consensus 264 y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~ 315 (434)
T PLN02257 264 FVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACK 315 (434)
T ss_pred cEEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHc
Confidence 456889999999 788999999999999865555555566677777776654
No 27
>PRK05246 glutathione synthetase; Provisional
Probab=98.46 E-value=7.2e-07 Score=88.58 Aligned_cols=73 Identities=23% Similarity=0.309 Sum_probs=47.9
Q ss_pred hhccCcCeEEEeCCCCCCCCceEEEcchh----hhhhhc---ccCcceeeccccCCccCCCcEEEEEEEEEEeccCceEE
Q psy2625 117 EVEENTPIYILKPCDGCQGKGIKLAMKID----DITSTM---EFDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRI 189 (396)
Q Consensus 117 ~~~~~~~~WIvKP~~gs~GrGI~lv~~~~----~i~~~~---~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~v 189 (396)
++....+..|+||..|++|+||++++..+ .+.+.+ ...++++|+||+.+- + -|+|++|+ .. +
T Consensus 149 ~~~~~~~~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~---~--~D~Rv~vv-~g----~- 217 (316)
T PRK05246 149 AFRAEHGDIILKPLDGMGGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIK---E--GDKRILLV-DG----E- 217 (316)
T ss_pred HHHHHCCCEEEEECCCCCccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCC---C--CCEEEEEE-CC----E-
Confidence 34444468999999999999999995422 222222 246899999996331 2 29999887 21 2
Q ss_pred EEEcc-eeEeeccc
Q psy2625 190 YIYNE-GIVRLATE 202 (396)
Q Consensus 190 y~y~~-g~vRfat~ 202 (396)
.-. ++.|.+..
T Consensus 218 --vv~~a~~R~~~~ 229 (316)
T PRK05246 218 --PVGYALARIPAG 229 (316)
T ss_pred --EhhheeEecCCC
Confidence 234 56777654
No 28
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.43 E-value=1.6e-06 Score=92.48 Aligned_cols=49 Identities=33% Similarity=0.669 Sum_probs=40.1
Q ss_pred eEEEeCCCCCCCCceEE-Ecchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 124 IYILKPCDGCQGKGIKL-AMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 124 ~WIvKP~~gs~GrGI~l-v~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
.-|+||..|++|+||.+ +++.+++...+. ...++||+||. |+ |+|++|+
T Consensus 333 ~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vlvEe~i~------G~--d~Rv~Vi 387 (547)
T TIGR03103 333 AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQFCDRVLLERYVP------GE--DLRLVVI 387 (547)
T ss_pred CEEEEECCCCCCcCeEEecCCHHHHHHHHHHHHhcCCcEEEEEecc------CC--eEEEEEE
Confidence 48999999999999997 888888765432 35789999996 65 9999766
No 29
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.40 E-value=1.2e-05 Score=80.73 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=34.5
Q ss_pred cCeEEEeCCCCC-CCCceEEEcchhhhhhhc---ccCcceeecccc
Q psy2625 122 TPIYILKPCDGC-QGKGIKLAMKIDDITSTM---EFDSMICQQYIT 163 (396)
Q Consensus 122 ~~~WIvKP~~gs-~GrGI~lv~~~~~i~~~~---~~~~~IVQkYI~ 163 (396)
.-.+|+||..++ .|+|+.++++.+++...+ ...++|||+||+
T Consensus 133 g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~I~ 178 (352)
T TIGR01161 133 GFPVVLKARTGGYDGRGQYRIRNEADLPQAAKELGDRECIVEEFVP 178 (352)
T ss_pred CCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcCCCcEEEEecCC
Confidence 457999999975 899999999998886544 234799999996
No 30
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.36 E-value=1.7e-06 Score=89.50 Aligned_cols=167 Identities=11% Similarity=0.183 Sum_probs=89.1
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEE
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRI 189 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~v 189 (396)
-.-..|+||..++.|+|+.++.+.+++...+. ...+|||+||+ |..+.+= ++... -.+
T Consensus 142 ~~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~------G~E~Sv~--~~~dg---~~~ 210 (426)
T PRK13789 142 EMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFME------GQEASIF--AISDG---DSY 210 (426)
T ss_pred cCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcC------CeEEEEE--EEECC---CEE
Confidence 34589999999999999999999887765321 13689999998 7655543 33322 111
Q ss_pred EEEcceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q psy2625 190 YIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKT 269 (396)
Q Consensus 190 y~y~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~t 269 (396)
+.+.- ++-...-|+.....|... ..|.+-. ..-.+.+.+++.+.|++.
T Consensus 211 ~~lp~--~~d~k~~~d~d~g~~tgg-mg~~~P~-----------------------------p~~~~~~~~~i~~~i~~~ 258 (426)
T PRK13789 211 FLLPA--AQDHKRAFDGDQGPNTGG-MGAYCPA-----------------------------PVITEAILQKVKERIFDP 258 (426)
T ss_pred EEccc--eEecccccCCCCCCCCCC-ceEEeeC-----------------------------CCCCHHHHHHHHHHHHHH
Confidence 11110 111111121100000000 0111110 000134455554433322
Q ss_pred HHhccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcchHHHHHHHHHHHHHhc
Q psy2625 270 VLTGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIKTNLTRDLFSIL 343 (396)
Q Consensus 270 l~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~d~~vk~~li~D~l~lv 343 (396)
+..+.... ...+..++.+|||++.+++||+||+|..|+-.....+...+..+|++-++.++
T Consensus 259 ~~~~l~~~-------------g~~~~Gvl~~e~~it~~g~~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~~~ 319 (426)
T PRK13789 259 MFDDFRKK-------------GHPYRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCVLAMLDGDLLELLYAAS 319 (426)
T ss_pred HHHHHHHh-------------CCCceEEEEEEEEEcCCCCEEEEEEecCCCCcHhhhhhccCCCCHHHHHHHHH
Confidence 22221111 11356789999999999999999999999865444444444445555444443
No 31
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.30 E-value=1.2e-05 Score=84.20 Aligned_cols=163 Identities=13% Similarity=0.018 Sum_probs=91.0
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcc--ee
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNE--GI 196 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~--g~ 196 (396)
-.-+|||..|+.|+|+.++++.+++..... ...++||+||. |+.+.+=+++.-. .........+ |.
T Consensus 182 yPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~------GrEitVev~vd~d--G~Vv~~~~~e~vg~ 253 (493)
T PRK06524 182 DDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR------NVEVCIEACVTRH--GTVIGPAMTSLVGY 253 (493)
T ss_pred CcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC------cEEEEEEEEEeCC--CCEEeccccccccc
Confidence 357999999999999999999998876543 24679999985 8877665543311 1111000000 00
Q ss_pred EeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch
Q psy2625 197 VRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKP 276 (396)
Q Consensus 197 vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~~ 276 (396)
.++. +|.... .+ .+++ ...-.+.+.+++.+++.++..+..
T Consensus 254 ~Ei~--~yr~G~----~~--~~i~------------------------------PA~L~~ei~eeIqeiA~ka~~aL~-- 293 (493)
T PRK06524 254 PELT--PYRGGW----CG--NDIW------------------------------PGALPPAQTRKAREMVRKLGDVLS-- 293 (493)
T ss_pred eEEE--EccCCe----EE--EEEc------------------------------cCCCCHHHHHHHHHHHHHHHHHhh--
Confidence 0111 111000 00 0000 011123455666666655554331
Q ss_pred hhhhhhhhcccccccccceeEeeeEEEecC-CCCeEEEEeeCCCCCCCCCcch-H---HHHHHHHHHHHHhccCCc
Q psy2625 277 ILREYLDTFKNYVYREACFQLLGFDIILDS-HCNPYLLEINKNASLKRPTSID-K---IIKTNLTRDLFSILNLNE 347 (396)
Q Consensus 277 l~~~~~~~~~~~~~~~~~FEl~G~D~llD~-~~kpWLLEVN~sPsl~~~s~~d-~---~vk~~li~D~l~lv~~~~ 347 (396)
..+|..++++||++|. ++++|++|||..|+=.+..... . .=.+.++-.++..++++-
T Consensus 294 --------------~lG~~Gv~rVDFfvd~ddgevYfnEINPR~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~ 355 (493)
T PRK06524 294 --------------REGYRGYFEVDLLHDLDADELYLGEVNPRLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDY 355 (493)
T ss_pred --------------cCCCEEEEEEEEEEECCCCeEEEEEEeCCcccccccchhhhccCCChhHHHHHHHHHhCCCc
Confidence 1257889999999996 6899999999998774331100 0 011345555666666653
No 32
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.29 E-value=1.9e-05 Score=87.86 Aligned_cols=147 Identities=10% Similarity=0.077 Sum_probs=84.6
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcceeE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGIV 197 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~v 197 (396)
-..||||..++.|.||.++++.+++...+. +.+++|++||. .|+.|.+= |+...... +......-
T Consensus 611 ~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~-----~grEi~v~--vl~~~~~~---~~~~~~~e 680 (809)
T PRK14573 611 FPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL-----GSREIEVS--CLGDGSSA---YVIAGPHE 680 (809)
T ss_pred CCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC-----CCEEEEEE--EEeCCCCc---eEeccceE
Confidence 468999999999999999999988876442 45788888875 35755544 44332111 10000000
Q ss_pred eecccCCCCCCCCCCCCcceeeecccccCCC-CccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch
Q psy2625 198 RLATEKYESPNETNIDNMYMHLTNYSINKNS-ENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKP 276 (396)
Q Consensus 198 Rfat~~Y~~~~~~nl~d~~~HLTN~sinK~~-~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~~ 276 (396)
+.....|. -+-.+|...-.. ..+ .....-.+.+.++|++++.++..+.
T Consensus 681 ~~~~~~f~-----------dy~~Ky~~~g~~~~~~-----------------~~Pa~l~~~~~~~i~~~a~~~~~aL--- 729 (809)
T PRK14573 681 RRGSGGFI-----------DYQEKYGLSGKSSAQI-----------------VFDLDLSKESQEQVLELAERIYRLL--- 729 (809)
T ss_pred EccCCCee-----------CchhcccCCCCCceEE-----------------ecCCCCCHHHHHHHHHHHHHHHHHh---
Confidence 11110110 000011000000 000 0000012456667777766655443
Q ss_pred hhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCc
Q psy2625 277 ILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTS 326 (396)
Q Consensus 277 l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~ 326 (396)
+|..+.++||++|.+++||++|||..|+|...+.
T Consensus 730 ----------------g~~G~~riDf~v~~~g~~yv~EiNt~PG~t~~s~ 763 (809)
T PRK14573 730 ----------------QGKGSCRIDFFLDEEGNFWLSEMNPIPGMTEASP 763 (809)
T ss_pred ----------------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCcccH
Confidence 3677899999999999999999999999988664
No 33
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=98.29 E-value=5.1e-06 Score=84.64 Aligned_cols=52 Identities=21% Similarity=0.381 Sum_probs=42.1
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-------cCcceeeccccCCccCCCcEEEEEEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-------FDSMICQQYITNPLLWNGYKFDIRFYV 179 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-------~~~~IVQkYI~~PlLi~GrKFDlRvyV 179 (396)
.-..|+||..++.|+|+.++.+.+++...+. ...+|||+||+ |..+.+.+++
T Consensus 102 g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~------G~E~sv~~~~ 160 (379)
T PRK13790 102 ELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLE------GEEFSLMTFV 160 (379)
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEccc------CceEEEEEEe
Confidence 4578999999999999999999888765431 24789999997 8888887654
No 34
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.29 E-value=8.4e-06 Score=81.29 Aligned_cols=142 Identities=16% Similarity=0.189 Sum_probs=91.4
Q ss_pred hhccCcCeEEEeCCCCCCCCceEEEcchhhhhhhc-----ccCcceeeccccCCccCCCcEEEEEEEEEE---ec-----
Q psy2625 117 EVEENTPIYILKPCDGCQGKGIKLAMKIDDITSTM-----EFDSMICQQYITNPLLWNGYKFDIRFYVLI---TS----- 183 (396)
Q Consensus 117 ~~~~~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----~~~~~IVQkYI~~PlLi~GrKFDlRvyVLV---ts----- 183 (396)
...+.+-..+|||+.....-|+..++...++.... .+++.++++|+. |+++.+.+.--- ..
T Consensus 137 ~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~d~~vl~e~~~~------~rei~v~vl~~~~~~~~l~~~e 210 (317)
T COG1181 137 VEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKYDRDVLREQGIT------GREIEVGVLGNDYEEQALPLGE 210 (317)
T ss_pred hhcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHhCCceeeccCCC------cceEEEEecCCcccceecCceE
Confidence 33556678999999998899999998887776532 367889999996 888877652220 00
Q ss_pred cCc--eEEEEEcceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHH
Q psy2625 184 VKH--LRIYIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYAR 261 (396)
Q Consensus 184 ~~P--L~vy~y~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~ 261 (396)
+-| -.+|.|..-++-.....+.. -..-.+.+.++
T Consensus 211 I~~~~~~fydye~Ky~~~gg~~~~~--------------------------------------------pa~lt~~~~~~ 246 (317)
T COG1181 211 IPPKGEEFYDYEAKYLSTGGAQYDI--------------------------------------------PAGLTDEIHEE 246 (317)
T ss_pred EecCCCeEEeeeccccCCCCceeeC--------------------------------------------CCCCCHHHHHH
Confidence 100 13333322111111111110 00012456777
Q ss_pred HHHHHHHHHHhccchhhhhhhhhcccccccccceeEeeeEEEecC-CCCeEEEEeeCCCCCCCCCcc
Q psy2625 262 IHDIIVKTVLTGYKPILREYLDTFKNYVYREACFQLLGFDIILDS-HCNPYLLEINKNASLKRPTSI 327 (396)
Q Consensus 262 I~~iI~~tl~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~-~~kpWLLEVN~sPsl~~~s~~ 327 (396)
|+++..++..+. +|-.+-|+||++|+ .+++||+|||+.|+|...+-.
T Consensus 247 i~~lA~~a~~al-------------------g~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~ 294 (317)
T COG1181 247 IKELALRAYKAL-------------------GCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLF 294 (317)
T ss_pred HHHHHHHHHHhc-------------------CCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccc
Confidence 777777666554 35558899999999 899999999999998776643
No 35
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=98.29 E-value=1.1e-05 Score=81.43 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=35.7
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhcc---------cCcceeecccc
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTME---------FDSMICQQYIT 163 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~---------~~~~IVQkYI~ 163 (396)
-.-.+|+||..|+.|+|+.++++.+++...+. ..++|||+||+
T Consensus 135 ~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~ 186 (380)
T TIGR01142 135 IGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFID 186 (380)
T ss_pred cCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecC
Confidence 34579999999999999999999988866432 34799999996
No 36
>PRK07206 hypothetical protein; Provisional
Probab=98.24 E-value=1.2e-05 Score=82.26 Aligned_cols=50 Identities=16% Similarity=0.416 Sum_probs=40.8
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc------------cCcceeeccccCCccCCCcEEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME------------FDSMICQQYITNPLLWNGYKFDIRFY 178 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~------------~~~~IVQkYI~~PlLi~GrKFDlRvy 178 (396)
..+|+||..|+.|+|+.++++.+++...+. ...++||+||+ |..|.+-++
T Consensus 147 ~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~------G~E~sv~~~ 208 (416)
T PRK07206 147 RPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI------GTEYVVNFV 208 (416)
T ss_pred CCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc------cEEEEEEEE
Confidence 389999999999999999999988765431 25789999997 877777654
No 37
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.19 E-value=2.4e-05 Score=77.28 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=44.0
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhcc-cCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTME-FDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
-.-.||+||..|+.|+|+.++++.+++...+. ..+++||+||. |..+++.+++-
T Consensus 147 ~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~~~~~lvqeyi~------G~e~~v~~~~~ 201 (326)
T PRK12767 147 LQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYVPNLIIQEFIE------GQEYTVDVLCD 201 (326)
T ss_pred CCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHhCCCeEEEeccC------CceEEEEEEEc
Confidence 34579999999999999999999988876543 35899999996 88777776553
No 38
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.18 E-value=3.1e-05 Score=80.10 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=34.9
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeecccc
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYIT 163 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~ 163 (396)
.-.+|+||..++.|+|+.++++.+++...+. ..+++||+||+
T Consensus 152 ~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~ 204 (450)
T PRK06111 152 GYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIE 204 (450)
T ss_pred CCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccC
Confidence 4579999999999999999999888765432 34789999997
No 39
>PRK12458 glutathione synthetase; Provisional
Probab=98.17 E-value=1.2e-05 Score=80.80 Aligned_cols=51 Identities=31% Similarity=0.454 Sum_probs=37.8
Q ss_pred EEEeCCCCCCCCceEEEcchh-----hhhhhc-ccCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 125 YILKPCDGCQGKGIKLAMKID-----DITSTM-EFDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 125 WIvKP~~gs~GrGI~lv~~~~-----~i~~~~-~~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
.|+||..|+.|+||+++++.+ .+.+.+ ...++++|+||+.+ ...|+|++++
T Consensus 165 vVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~-----~~gDiRv~vv 221 (338)
T PRK12458 165 MILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGA-----EEGDVRILLL 221 (338)
T ss_pred EEEEECCCCCccCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCC-----CCCCEEEEEE
Confidence 899999999999999997544 222222 24589999999732 2359999864
No 40
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.17 E-value=3.2e-05 Score=79.42 Aligned_cols=49 Identities=14% Similarity=0.286 Sum_probs=38.2
Q ss_pred Ce-EEEeCCCCCCCCceEEEcchhhhhhhcc----------cCcceeeccccCCccCCCcEEEEEE
Q psy2625 123 PI-YILKPCDGCQGKGIKLAMKIDDITSTME----------FDSMICQQYITNPLLWNGYKFDIRF 177 (396)
Q Consensus 123 ~~-WIvKP~~gs~GrGI~lv~~~~~i~~~~~----------~~~~IVQkYI~~PlLi~GrKFDlRv 177 (396)
-. +|+||..++.|+|+.++.+.+++...+. ..+++||+||+ |..|.+-+
T Consensus 140 ~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~------G~E~sv~~ 199 (423)
T TIGR00877 140 APAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD------GEEVSLLA 199 (423)
T ss_pred CCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc------CceEEEEE
Confidence 35 9999999999999999999888755321 24799999997 76555544
No 41
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.17 E-value=4.1e-05 Score=77.76 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=35.7
Q ss_pred cCcCeEEEeCCCC-CCCCceEEEcchhhhhhhc---ccCcceeecccc
Q psy2625 120 ENTPIYILKPCDG-CQGKGIKLAMKIDDITSTM---EFDSMICQQYIT 163 (396)
Q Consensus 120 ~~~~~WIvKP~~g-s~GrGI~lv~~~~~i~~~~---~~~~~IVQkYI~ 163 (396)
.-.-.+|+||..+ +.|+|++++++.+++.... ...++|||+||+
T Consensus 133 ~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~I~ 180 (372)
T PRK06019 133 DLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALLGSVPCILEEFVP 180 (372)
T ss_pred HcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhcCCCCEEEEecCC
Confidence 3456899999985 6899999999998887654 245899999996
No 42
>PRK05586 biotin carboxylase; Validated
Probab=98.11 E-value=5.6e-05 Score=78.56 Aligned_cols=54 Identities=22% Similarity=0.366 Sum_probs=40.5
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEEEEEe
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFYVLIT 182 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVt 182 (396)
.-..|+||..|+.|+|+.++++.+++...+. ..+++||+||+ |- -++.+.++..
T Consensus 152 gyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~------g~-~ei~v~v~~d 216 (447)
T PRK05586 152 GYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIE------NP-KHIEFQILGD 216 (447)
T ss_pred CCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCC------CC-eEEEEEEEEC
Confidence 4478999999999999999999988765432 35789999997 32 2455555543
No 43
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.11 E-value=5.1e-05 Score=76.90 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=42.8
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc----------cCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME----------FDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~----------~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
...|+||..++.|+|++++++.+++...++ ...++||+||. |..|.+=+|+-
T Consensus 150 ~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~------G~e~sv~~f~s 211 (358)
T PRK13278 150 RPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV------GVPYYFHYFYS 211 (358)
T ss_pred CCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC------CcEEEEEEEEe
Confidence 478999999999999999999888765432 46889999998 88888776653
No 44
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.11 E-value=8.2e-05 Score=76.54 Aligned_cols=51 Identities=14% Similarity=0.329 Sum_probs=39.7
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFY 178 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvy 178 (396)
.-.+|+||..++.|+|+.++.+.+++...+. ...++||+||+ |..|.+-++
T Consensus 137 ~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~------G~E~sv~~~ 198 (420)
T PRK00885 137 GAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD------GEEASFFAF 198 (420)
T ss_pred CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC------CcEEEEEEE
Confidence 4478999999999999999999887755321 24799999997 876665543
No 45
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=98.11 E-value=1.3e-05 Score=79.61 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=38.9
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchh----hhhhh---cccCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKID----DITST---MEFDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~----~i~~~---~~~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
..+..|+||..|++|+|++.++..+ .+... ....++++|+||+.+ .+ -|+|++|+
T Consensus 152 ~~g~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~---~~--~D~Rv~vv 213 (312)
T TIGR01380 152 EHGDIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEI---KE--GDKRILLI 213 (312)
T ss_pred HcCCEEEEECCCCCCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccc---cC--CCEEEEEE
Confidence 3347999999999999999986522 12121 224589999999632 22 49999886
No 46
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.11 E-value=1.9e-05 Score=82.00 Aligned_cols=42 Identities=21% Similarity=0.440 Sum_probs=35.1
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhc-----------ccCcceeecccc
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTM-----------EFDSMICQQYIT 163 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----------~~~~~IVQkYI~ 163 (396)
.-.+|+||..++.|+|+.++++.+++...+ ....++||+||+
T Consensus 152 g~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~ 204 (449)
T TIGR00514 152 GYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIE 204 (449)
T ss_pred CCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 457899999999999999999998876643 235689999997
No 47
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.06 E-value=5.3e-05 Score=78.57 Aligned_cols=42 Identities=14% Similarity=0.333 Sum_probs=34.8
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeecccc
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYIT 163 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~ 163 (396)
.-.+|+||..|+.|+|+.++++.+++...+. ...++||+||+
T Consensus 152 g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~ 204 (451)
T PRK08591 152 GYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLE 204 (451)
T ss_pred CCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 3479999999999999999999988765442 34689999997
No 48
>PRK08462 biotin carboxylase; Validated
Probab=98.06 E-value=6.8e-05 Score=77.74 Aligned_cols=43 Identities=21% Similarity=0.331 Sum_probs=35.4
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhc-----------ccCcceeecccc
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTM-----------EFDSMICQQYIT 163 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----------~~~~~IVQkYI~ 163 (396)
-.-.||+||..|+.|+|+.++++.+++...+ ....++||+||+
T Consensus 153 ~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~ 206 (445)
T PRK08462 153 IGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFIN 206 (445)
T ss_pred cCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCC
Confidence 3457999999999999999999998876543 134689999997
No 49
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.04 E-value=4e-05 Score=86.21 Aligned_cols=133 Identities=11% Similarity=0.214 Sum_probs=75.7
Q ss_pred hhhhhHHhhhcccCcccCCchhhhhhhhhcccCccCCCcccccccccccccccccccccccccCCCCCCc--cccccccC
Q psy2625 34 NVKNMVMELNRLNHTNTTNDNATKANKTIRRNSPIEDNDNIKDKSSNQDSSNKTDVDIQRDDKHDGHKNK--ADKENERK 111 (396)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~sn~~~~~~~~~~~~r~~~~~~f~~~--~~~~~~~~ 111 (396)
.+...+.++..+...-+..|.....-..+....-+|++.. -+-....||+.| .+.++.. |...+ ......
T Consensus 60 ~l~~~~~~~~~i~~V~~~se~~v~~aa~lae~lglpg~~~----ea~~~~~dK~~~-r~~L~~~-GIp~P~~~~v~~~-- 131 (887)
T PRK02186 60 RIHRFVSSLDGVAGIMSSSEYFIEVASEVARRLGLPAANT----EAIRTCRDKKRL-ARTLRDH-GIDVPRTHALALR-- 131 (887)
T ss_pred HHHHHHHhcCCCCEEEeCchhhHHHHHHHHHHhCcCCCCH----HHHHHhcCHHHH-HHHHHHc-CCCCCCEEEeCCH--
Confidence 3444555544333333456655555556666666776531 122233455544 3333332 22211 000000
Q ss_pred CChhhhhccCcCeEEEeCCCCCCCCceEEEcchhhhhhhc------ccCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 112 PNVTTEVEENTPIYILKPCDGCQGKGIKLAMKIDDITSTM------EFDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 112 ~~~~~~~~~~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~------~~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
.........-.-.+|+||..|+.|+|++++++.+++...+ ...+++||+||+ |..|++.+++.
T Consensus 132 ~e~~~~~~~~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~------G~E~sVe~i~~ 200 (887)
T PRK02186 132 AVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVE------GDEYSVETLTV 200 (887)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCcEEEeeccc------CCcEEEEEEEE
Confidence 0111112233457999999999999999999998876543 246799999997 88888887554
No 50
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.02 E-value=1.1e-05 Score=77.17 Aligned_cols=38 Identities=39% Similarity=0.777 Sum_probs=32.3
Q ss_pred hccCcCeEEEeCCCCCCCCceEEEcchhhhhhhcccCcceeecccc
Q psy2625 118 VEENTPIYILKPCDGCQGKGIKLAMKIDDITSTMEFDSMICQQYIT 163 (396)
Q Consensus 118 ~~~~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~~~~~IVQkYI~ 163 (396)
+......+|+||+.||+|.||.+..+..++ +|+|+||+
T Consensus 134 ~~~~~~k~ViKp~dgCgge~i~~~~~~pd~--------~i~qEfIe 171 (307)
T COG1821 134 WAEEPKKYVIKPADGCGGEGILFGRDFPDI--------EIAQEFIE 171 (307)
T ss_pred cccCCceEEecccccCCcceeeccCCCcch--------hhHHHhcC
Confidence 445678999999999999999998876654 69999998
No 51
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=98.02 E-value=0.00011 Score=74.69 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=35.4
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhcc---------cCcceeecccc
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTME---------FDSMICQQYIT 163 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~---------~~~~IVQkYI~ 163 (396)
-.-.+|+||..++.|+|+.++++.+++...+. ..++|||+||+
T Consensus 148 ~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~ 199 (395)
T PRK09288 148 IGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID 199 (395)
T ss_pred cCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecC
Confidence 34579999999999999999999988765432 25799999996
No 52
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.00 E-value=8.5e-05 Score=77.76 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=35.5
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhc-----------ccCcceeecccc
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTM-----------EFDSMICQQYIT 163 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----------~~~~~IVQkYI~ 163 (396)
-.-.+|+||..|+.|+|+.++++.+++...+ ....++||+||+
T Consensus 154 igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~ 207 (467)
T PRK12833 154 IGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIA 207 (467)
T ss_pred hCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC
Confidence 3457999999999999999999998876543 245689999997
No 53
>PRK14016 cyanophycin synthetase; Provisional
Probab=98.00 E-value=3.3e-05 Score=85.08 Aligned_cols=52 Identities=27% Similarity=0.514 Sum_probs=41.8
Q ss_pred CcCeEEEeCCCCCCCCceEE-Ecchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 121 NTPIYILKPCDGCQGKGIKL-AMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~l-v~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
-.-.-|+||..|+.|+|+.+ +++.+++...+. ...++||+||. |+ |+|++|+
T Consensus 248 iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe~I~------G~--d~Rv~Vv 305 (727)
T PRK14016 248 IGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASKESSDVIVERYIP------GK--DHRLLVV 305 (727)
T ss_pred cCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHHhCCeEEEEEecC------Cc--eEEEEEE
Confidence 34568999999999999998 888888765442 46799999996 65 8998765
No 54
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=97.96 E-value=7.3e-05 Score=68.34 Aligned_cols=73 Identities=21% Similarity=0.354 Sum_probs=40.6
Q ss_pred hhccCcCeEEEeCCCCCCCCceEEEcch----hhhhhhc---ccCcceeeccccCCccCCCcEEEEEEEEEEeccCceEE
Q psy2625 117 EVEENTPIYILKPCDGCQGKGIKLAMKI----DDITSTM---EFDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRI 189 (396)
Q Consensus 117 ~~~~~~~~WIvKP~~gs~GrGI~lv~~~----~~i~~~~---~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~v 189 (396)
+|....+.||+||..|..|+|++.++.- +.+.+.+ ...++++|+||+. .-+| |.|+.++=-.
T Consensus 26 ~f~~~~~~~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~--i~~G---DkRii~~nG~------ 94 (173)
T PF02955_consen 26 AFIEEHGDIVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPE--IKEG---DKRIILFNGE------ 94 (173)
T ss_dssp HHHHHHSSEEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GG--GGG----EEEEEEETTE------
T ss_pred HHHHHCCCEEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEecccc--ccCC---CEEEEEECCE------
Confidence 4444556699999999999999999763 3333322 2356999999963 3466 8898666322
Q ss_pred EEEcceeEeeccc
Q psy2625 190 YIYNEGIVRLATE 202 (396)
Q Consensus 190 y~y~~g~vRfat~ 202 (396)
+.+++.|....
T Consensus 95 --~~~av~R~P~~ 105 (173)
T PF02955_consen 95 --PSHAVRRIPAK 105 (173)
T ss_dssp --E-SEEEEE--S
T ss_pred --EhHHeecCCCC
Confidence 22367787654
No 55
>PRK06849 hypothetical protein; Provisional
Probab=97.93 E-value=9.3e-05 Score=75.33 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=39.3
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhc--ccCcceeeccccCCccCCCcEEEEEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTM--EFDSMICQQYITNPLLWNGYKFDIRFY 178 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~--~~~~~IVQkYI~~PlLi~GrKFDlRvy 178 (396)
...+|+||..++.|+|+.++.+.+.+.... ...++|+|+||+ |..+.+..+
T Consensus 152 ~~P~vlKP~~~~~~~~v~~~~~~~~l~~~~~~~~~~~ivQe~I~------G~e~~~~~~ 204 (389)
T PRK06849 152 HTPYVLKPIYSRFVRRVDLLPKEAALKELPISKDNPWVMQEFIQ------GKEYCSYSI 204 (389)
T ss_pred CCcEEEEeCcccCCCeEEEecCHHHhcccccCCCCCeEEEEEec------CCeEEEEEE
Confidence 568999999999999999988865554432 134699999997 887766554
No 56
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=97.93 E-value=0.00018 Score=75.58 Aligned_cols=42 Identities=26% Similarity=0.499 Sum_probs=35.0
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhc-----------ccCcceeecccc
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTM-----------EFDSMICQQYIT 163 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----------~~~~~IVQkYI~ 163 (396)
.-.+|+||..|+.|+||.++++.+++...+ ....++||+||+
T Consensus 152 gyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~ 204 (478)
T PRK08463 152 GYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVV 204 (478)
T ss_pred CCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC
Confidence 457999999999999999999998876543 245789999997
No 57
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=97.92 E-value=0.00016 Score=83.13 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=42.7
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhc-----------ccCcceeeccccCCccCCCcEEEEEEEEEEec
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTM-----------EFDSMICQQYITNPLLWNGYKFDIRFYVLITS 183 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----------~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts 183 (396)
-.-.+|+||..|+.|+|+.++++.+++...+ ....++||+||+.| + ++.+-++...
T Consensus 151 iGyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~-----r--eIeVqVlgD~ 217 (1143)
T TIGR01235 151 IGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERP-----R--HIEVQLLGDK 217 (1143)
T ss_pred cCCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCC-----e--EEEEEEEEeC
Confidence 3457999999999999999999988876542 24578999999743 2 5677666543
No 58
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=97.91 E-value=2.8e-05 Score=85.11 Aligned_cols=51 Identities=27% Similarity=0.539 Sum_probs=39.6
Q ss_pred CeEEEeCCCCCCCCceEEEcc---hhhhhhhc-----ccCcceeeccccCCccCCCcEEEEEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMK---IDDITSTM-----EFDSMICQQYITNPLLWNGYKFDIRFYVLI 181 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~---~~~i~~~~-----~~~~~IVQkYI~~PlLi~GrKFDlRvyVLV 181 (396)
..-||||..++.|+||.++.+ .+++.+.+ .+..+|||+||+ |+ |+|+.|+-
T Consensus 512 ~PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~------G~--EyRv~VIg 570 (737)
T TIGR01435 512 KAIVVKPKSTNYGLGITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP------GT--EYRFFVLN 570 (737)
T ss_pred CCEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc------CC--EEEEEEEC
Confidence 457999999999999999876 44444332 245789999997 87 99998774
No 59
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=97.83 E-value=0.00031 Score=73.69 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=34.7
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhc-----------ccCcceeecccc
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTM-----------EFDSMICQQYIT 163 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----------~~~~~IVQkYI~ 163 (396)
-.-.+|+||..|+.|+|+.++++.+++...+ ...++++|+||+
T Consensus 150 igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~ 203 (472)
T PRK07178 150 IGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIV 203 (472)
T ss_pred cCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3457999999999999999999998886532 234688999986
No 60
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=97.80 E-value=0.00032 Score=72.91 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcchHHHHHHH
Q psy2625 256 NALYARIHDIIVKTVLTGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIKTNL 335 (396)
Q Consensus 256 ~~l~~~I~~iI~~tl~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~d~~vk~~l 335 (396)
+.+.++|++++..++.+.... ......++.++||+.+++ ||+||+|..++=.....+...+..+|
T Consensus 245 ~~~~~~i~~i~~~~~~~l~~~--------------~~~~~G~l~~~~~lt~~g-p~ViE~n~R~gdpe~~~il~~l~~d~ 309 (435)
T PRK06395 245 KDAPERAKHILNDIIRAMKDE--------------NNPFKGIMYGQFMDTPNG-VKVIEINARFADPEGINVLYLLKSDF 309 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------------CCceEEEEEEEEEEeCCC-cEEEEEeCCCCCccHHhhhhhcccCH
Confidence 455667777766666554311 122446788999997554 99999999887443333334455666
Q ss_pred HHHHHHhcc
Q psy2625 336 TRDLFSILN 344 (396)
Q Consensus 336 i~D~l~lv~ 344 (396)
++-++.++.
T Consensus 310 ~~~~~~~~~ 318 (435)
T PRK06395 310 VETLHQIYS 318 (435)
T ss_pred HHHHHHHhc
Confidence 666665554
No 61
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=97.77 E-value=0.00037 Score=73.74 Aligned_cols=44 Identities=16% Similarity=0.359 Sum_probs=35.9
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccC
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITN 164 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~ 164 (396)
-.-.+|+||..|+.|+|+.++++.+++...+. ..+++||+||+.
T Consensus 151 igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~ 205 (499)
T PRK08654 151 IGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEK 205 (499)
T ss_pred hCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 34579999999999999999999988765432 357899999973
No 62
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.76 E-value=0.00049 Score=78.99 Aligned_cols=51 Identities=10% Similarity=0.284 Sum_probs=42.0
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-------cCcceeeccccCCccCCCc-EEEEEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-------FDSMICQQYITNPLLWNGY-KFDIRFY 178 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-------~~~~IVQkYI~~PlLi~Gr-KFDlRvy 178 (396)
.-.+|+||..++.|+|+.++.+.+++...+. ..+++||+||+ |. .+++.+.
T Consensus 704 gyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~------G~~E~sV~~v 762 (1066)
T PRK05294 704 GYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLE------GAIEVDVDAI 762 (1066)
T ss_pred CCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCC------CCEEEEEEEE
Confidence 4579999999999999999999988765432 35799999998 76 7888763
No 63
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=97.76 E-value=0.00044 Score=74.37 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=33.3
Q ss_pred cCeEEEeCCCCC-CCCceEEEcchhhhhhhcc-----cCcceeecccc
Q psy2625 122 TPIYILKPCDGC-QGKGIKLAMKIDDITSTME-----FDSMICQQYIT 163 (396)
Q Consensus 122 ~~~WIvKP~~gs-~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~ 163 (396)
.-..|+||..++ .|+|+.++++.+++...+. +.+++|++||+
T Consensus 156 g~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~ 203 (577)
T PLN02948 156 GYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAP 203 (577)
T ss_pred CCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCC
Confidence 447899999765 7999999999988866442 35789999985
No 64
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.76 E-value=0.00055 Score=69.22 Aligned_cols=53 Identities=17% Similarity=0.286 Sum_probs=42.1
Q ss_pred cCeEEEeCCCCCC--CCceEEEcchhhhhhhcc---c---------CcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 122 TPIYILKPCDGCQ--GKGIKLAMKIDDITSTME---F---------DSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 122 ~~~WIvKP~~gs~--GrGI~lv~~~~~i~~~~~---~---------~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
+...||||..+++ |+|++++++.+++..... . ..++||+||. |..|.+=+|+-
T Consensus 152 d~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~------G~ey~~d~F~s 218 (366)
T PRK13277 152 DRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVI------GAHFNFNYFYS 218 (366)
T ss_pred CccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccC------CCEEEEEEEEe
Confidence 4568999999999 999999999988765432 1 3457999997 88888887644
No 65
>PRK12999 pyruvate carboxylase; Reviewed
Probab=97.72 E-value=0.0004 Score=80.02 Aligned_cols=55 Identities=22% Similarity=0.410 Sum_probs=41.3
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEEEEEe
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFYVLIT 182 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVt 182 (396)
-.-.+|+||..|+.|+|+.++++.+++...+. ...++||+||+.| + ++.+-++..
T Consensus 155 iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~-----~--~ieVqvl~D 220 (1146)
T PRK12999 155 IGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENP-----R--HIEVQILGD 220 (1146)
T ss_pred hCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCC-----e--EEEEEEEEE
Confidence 34579999999999999999999988765432 3578999999732 2 356555544
No 66
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=97.69 E-value=8.9e-05 Score=81.87 Aligned_cols=50 Identities=28% Similarity=0.559 Sum_probs=38.5
Q ss_pred CeEEEeCCCCCCCCceEEEcc---hhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMK---IDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~---~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
-..||||..|+.|+||.++.+ .+++.+.+. ...++||+||. |+ |+|+.|+
T Consensus 525 ~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~------G~--E~Rv~Vi 582 (752)
T PRK02471 525 KAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFREDSSVLVEEFIV------GT--EYRFFVL 582 (752)
T ss_pred CCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCcEEEEeccc------CC--EEEEEEE
Confidence 468999999999999998754 455444321 45789999996 77 8998776
No 67
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=97.66 E-value=0.00012 Score=82.22 Aligned_cols=51 Identities=33% Similarity=0.627 Sum_probs=41.2
Q ss_pred cCeEEEeCCCCCCCCceEE-Ecchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKL-AMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~l-v~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
.-..++||..|+.|+|+.+ +.+.+++...+. ...++||+||. |+ |+|++|+
T Consensus 248 g~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~~~~vlVEefI~------G~--e~rvlVv 304 (864)
T TIGR02068 248 GYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEESSGVIVERFIT------GR--DHRLLVV 304 (864)
T ss_pred CCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhhCCcEEEEEecc------CC--EEEEEEE
Confidence 4578999999999999998 888888765432 45799999996 76 8898765
No 68
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=97.62 E-value=0.00061 Score=71.84 Aligned_cols=49 Identities=14% Similarity=0.353 Sum_probs=35.9
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhh-------------hhhc--------ccCcceeeccccCCccCCCcEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDI-------------TSTM--------EFDSMICQQYITNPLLWNGYKFDIRF 177 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i-------------~~~~--------~~~~~IVQkYI~~PlLi~GrKFDlRv 177 (396)
...|+||..++.|+|+.++.+.+++ ...+ ....+|||+||+ |..+.+=+
T Consensus 145 ~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~------G~E~SV~a 214 (486)
T PRK05784 145 GSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVD------GVEYTLQV 214 (486)
T ss_pred CCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccC------CeEEEEEE
Confidence 4799999999999999999986521 1111 135789999998 87665544
No 69
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.61 E-value=0.00079 Score=77.22 Aligned_cols=53 Identities=9% Similarity=0.280 Sum_probs=42.4
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-------cCcceeeccccCCccCCCcEEEEEEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-------FDSMICQQYITNPLLWNGYKFDIRFYV 179 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-------~~~~IVQkYI~~PlLi~GrKFDlRvyV 179 (396)
.-.+|+||..++.|+|+.++.+.+++...+. ..+++||+||+ +|+.+++.+++
T Consensus 704 gyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~-----~G~E~~Vd~l~ 763 (1050)
T TIGR01369 704 GYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLE-----DAVEVDVDAVS 763 (1050)
T ss_pred CCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCC-----CCeEEEEEEEE
Confidence 4569999999999999999999988866432 35799999997 37778877643
No 70
>PLN02735 carbamoyl-phosphate synthase
Probab=97.50 E-value=0.0019 Score=74.46 Aligned_cols=51 Identities=12% Similarity=0.320 Sum_probs=39.7
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-------cCcceeeccccCCccCCCcEEEEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-------FDSMICQQYITNPLLWNGYKFDIRF 177 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-------~~~~IVQkYI~~PlLi~GrKFDlRv 177 (396)
+-..|+||..+..|+|+.++.+.+++...+. ..+++||+||+ +|+.+++=+
T Consensus 737 GyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~-----~g~Ei~V~v 794 (1102)
T PLN02735 737 GYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLS-----DATEIDVDA 794 (1102)
T ss_pred CCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecC-----CcEEEEEEE
Confidence 3468999999999999999999988865432 34689999996 256666654
No 71
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=97.49 E-value=0.002 Score=60.05 Aligned_cols=48 Identities=13% Similarity=0.257 Sum_probs=33.6
Q ss_pred eEEEeCCCCCCCCceEEEcchhhhhhhc----c-------cCcceeeccccCCccCCCcEEEEEE
Q psy2625 124 IYILKPCDGCQGKGIKLAMKIDDITSTM----E-------FDSMICQQYITNPLLWNGYKFDIRF 177 (396)
Q Consensus 124 ~WIvKP~~gs~GrGI~lv~~~~~i~~~~----~-------~~~~IVQkYI~~PlLi~GrKFDlRv 177 (396)
.++|||...+.|+|+.++.+.++..+.+ . ....||++|++ |..+.+=+
T Consensus 40 ~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~------G~E~S~~a 98 (194)
T PF01071_consen 40 YVVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEEFLE------GEEVSLFA 98 (194)
T ss_dssp EEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---------SEEEEEEE
T ss_pred ceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEeccC------CeEEEEEE
Confidence 3699999999999999999876544322 1 46789999998 88555433
No 72
>PLN02735 carbamoyl-phosphate synthase
Probab=97.44 E-value=0.0016 Score=75.01 Aligned_cols=49 Identities=12% Similarity=0.304 Sum_probs=39.1
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-------cCcceeeccccCCccCCC-cEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-------FDSMICQQYITNPLLWNG-YKFDIRF 177 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-------~~~~IVQkYI~~PlLi~G-rKFDlRv 177 (396)
-..|+||+.++.|+|+.++.+.+++...+. ..+++||+||. | +.+.+=+
T Consensus 181 yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~------G~kE~ev~V 237 (1102)
T PLN02735 181 FPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLL------GWKEYELEV 237 (1102)
T ss_pred CCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC------CCeEEEEEE
Confidence 368999999999999999999988876542 35789999997 6 5566544
No 73
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.42 E-value=0.0013 Score=75.57 Aligned_cols=51 Identities=12% Similarity=0.324 Sum_probs=41.8
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhc-----ccCcceeeccccCCccCCCcEEEEEE
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTM-----EFDSMICQQYITNPLLWNGYKFDIRF 177 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----~~~~~IVQkYI~~PlLi~GrKFDlRv 177 (396)
-.-.+|+||..+..|+|+.++.+.+++...+ ...+++||+||+ |..+++-+
T Consensus 704 igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~------G~E~~Vd~ 759 (1068)
T PRK12815 704 IGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENASQLYPILIDQFID------GKEYEVDA 759 (1068)
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhhcCCCCEEEEEeec------CceEEEEE
Confidence 3457999999999999999999988876543 246799999996 87777665
No 74
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.28 E-value=0.002 Score=74.04 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=35.0
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-------cCcceeecccc
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-------FDSMICQQYIT 163 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-------~~~~IVQkYI~ 163 (396)
.-..|+||..|..|+|+.++++.+++...+. ..+++||+||.
T Consensus 163 g~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~ 211 (1066)
T PRK05294 163 GYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLL 211 (1066)
T ss_pred CCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEccc
Confidence 3478999999999999999999988866432 35789999997
No 75
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=97.18 E-value=0.0063 Score=70.72 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=35.1
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeecccc
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYIT 163 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~ 163 (396)
-.-.+|+||..++.|+|+.++++.+++...+. ...++||+||+
T Consensus 149 igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~ 202 (1201)
T TIGR02712 149 IGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVE 202 (1201)
T ss_pred cCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC
Confidence 34589999999999999999999888764331 34689999996
No 76
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=97.10 E-value=0.0078 Score=60.46 Aligned_cols=27 Identities=37% Similarity=0.411 Sum_probs=24.8
Q ss_pred EeeeEEEecCCCCeEEEEeeCCCCCCC
Q psy2625 297 LLGFDIILDSHCNPYLLEINKNASLKR 323 (396)
Q Consensus 297 l~G~D~llD~~~kpWLLEVN~sPsl~~ 323 (396)
++++++-.|.+++|+|||||..||=..
T Consensus 259 ~~NiQ~r~d~~g~p~LLEINpR~sGGi 285 (329)
T PF15632_consen 259 LFNIQFRYDEDGNPKLLEINPRPSGGI 285 (329)
T ss_pred eEEEEEEEcCCCCEEEEEeCCCCccch
Confidence 889999999999999999999998654
No 77
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=97.07 E-value=0.015 Score=60.63 Aligned_cols=43 Identities=16% Similarity=0.404 Sum_probs=36.3
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhc-----------ccCcceeeccccCC
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTM-----------EFDSMICQQYITNP 165 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----------~~~~~IVQkYI~~P 165 (396)
-.-||||+.|+.|+|+.++++.+++...+ .+..+++++||++|
T Consensus 153 yPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~ 206 (449)
T COG0439 153 YPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGP 206 (449)
T ss_pred CCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCC
Confidence 47899999999999999999998876643 24558999999976
No 78
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.06 E-value=0.0099 Score=68.37 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=34.7
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhc----c---cCcceeecccc
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTM----E---FDSMICQQYIT 163 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~----~---~~~~IVQkYI~ 163 (396)
.-..|+||+.+..|+|+.++.+.+++...+ . ..+++||+||.
T Consensus 162 gyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~ 210 (1050)
T TIGR01369 162 GYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLA 210 (1050)
T ss_pred CCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEccc
Confidence 346899999999999999999998876542 1 25789999997
No 79
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=96.88 E-value=0.027 Score=59.63 Aligned_cols=157 Identities=15% Similarity=0.255 Sum_probs=101.5
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhc-----------ccCcceeeccccCCccCCCcEEEEEEEEEEeccCceEE
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTM-----------EFDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRI 189 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----------~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~v 189 (396)
-.-.-.+|.+.|..|+|+.++.+.+++...+ .+..++|.||+.+| | +|=+-|+-.. ..-.+
T Consensus 151 iGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~P-----R--HIEiQV~aD~-HGNvv 222 (645)
T COG4770 151 IGYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKP-----R--HIEIQVFADQ-HGNVV 222 (645)
T ss_pred cCCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCC-----c--eEEEEEEecC-CCCEE
Confidence 4456789999999999999999998877654 36789999999988 3 4444444433 22233
Q ss_pred EEEcceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHh--cCCCHHHHHHHHHHHHH
Q psy2625 190 YIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDV--HNVDLNALYARIHDIIV 267 (396)
Q Consensus 190 y~y~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~--~g~d~~~l~~~I~~iI~ 267 (396)
|++. |= .|+|..+.+. +++- .+. .+.+...|.+..+
T Consensus 223 ~LgE----Rd----------------------CSlQRRhQKV---------------IEEAPaP~l-~~~~R~amg~aAv 260 (645)
T COG4770 223 HLGE----RD----------------------CSLQRRHQKV---------------IEEAPAPFL-TEETREAMGEAAV 260 (645)
T ss_pred Eeec----cc----------------------cchhhhcchh---------------hhcCCCCCC-CHHHHHHHHHHHH
Confidence 3321 11 2444433322 2220 111 2456777777766
Q ss_pred HHHHhccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcchHHHHH-HHHHHHHHhccCC
Q psy2625 268 KTVLTGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIKT-NLTRDLFSILNLN 346 (396)
Q Consensus 268 ~tl~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~d~~vk~-~li~D~l~lv~~~ 346 (396)
++..++- | ...+ -+.|++|.++..|+||+|+. |...+|+.+.+.. +|++-.|++..-.
T Consensus 261 ~~a~avg------Y--------~gAG-----TVEFivd~~~~f~FlEMNTR--LQVEHPVTE~iTGiDLVewqiRVA~Ge 319 (645)
T COG4770 261 AAAKAVG------Y--------VGAG-----TVEFIVDADGNFYFLEMNTR--LQVEHPVTELITGIDLVEWQIRVASGE 319 (645)
T ss_pred HHHHhcC------C--------CcCc-----eEEEEEcCCCcEEEEEeecc--eeccccchhhhhhhHHHHHHHHHhcCC
Confidence 6665542 1 1122 46789999999999999995 6777777766653 6889999987644
Q ss_pred cc
Q psy2625 347 ES 348 (396)
Q Consensus 347 ~~ 348 (396)
..
T Consensus 320 kL 321 (645)
T COG4770 320 KL 321 (645)
T ss_pred cC
Confidence 43
No 80
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=96.84 E-value=0.027 Score=53.04 Aligned_cols=151 Identities=13% Similarity=0.229 Sum_probs=81.5
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhc-----------ccCcceeeccccCCccCCCcEEEEEEEEEEeccCc-eEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTM-----------EFDSMICQQYITNPLLWNGYKFDIRFYVLITSVKH-LRIY 190 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----------~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~P-L~vy 190 (396)
-..++||+.|..|+|+.++.+.+++...+ ...++++.+||++| +.+++= ++..+.+- +-++
T Consensus 39 yPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~-----reiEvq--vi~D~~gn~~~~~ 111 (211)
T PF02786_consen 39 YPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGA-----REIEVQ--VIRDGKGNVVHLG 111 (211)
T ss_dssp SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSE-----EEEEEE--EEEETTSEEEEEE
T ss_pred CceEEeecccccccccccccchhhhhhhhhhccccCccccccceEEEeeehhhh-----hhhhhh--hhhccccceeeee
Confidence 46899999999999999999998877644 25788999999833 333433 33333221 1112
Q ss_pred EEcceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy2625 191 IYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTV 270 (396)
Q Consensus 191 ~y~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl 270 (396)
......-| .+.+ .+ =.+- . ... .+.++.+|.+...+..
T Consensus 112 ~~e~~~~~-hs~d-------si-----~~~P-------------~---------------~~L-~~~~~~~l~~~a~~ia 149 (211)
T PF02786_consen 112 ERECSEQR-HSQD-------SI-----EEAP-------------A---------------QTL-SDEERQKLREAAKKIA 149 (211)
T ss_dssp EEEEEEEE-TTEE-------EE-----EEES-----------------------------SSS--HHHHHHHHHHHHHHH
T ss_pred eecccccc-cccc-------ce-----eEee-------------c---------------ccc-chHHHHHHHHHHHHHH
Confidence 11111111 1000 00 0000 0 011 1345666666655444
Q ss_pred HhccchhhhhhhhhcccccccccceeEeeeEEEecC-CCCeEEEEeeCCCCCCCCCcchHHH-HHHHHHHHHHhc
Q psy2625 271 LTGYKPILREYLDTFKNYVYREACFQLLGFDIILDS-HCNPYLLEINKNASLKRPTSIDKII-KTNLTRDLFSIL 343 (396)
Q Consensus 271 ~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~-~~kpWLLEVN~sPsl~~~s~~d~~v-k~~li~D~l~lv 343 (396)
..+ +.-...-+-|++|. ++++|+||||.. ++..+++.+.+ -.+|+.-.++++
T Consensus 150 ~~l-------------------~~~G~~tvef~~~~~~~~~y~lEvNpR--~~~~~p~~e~~tg~dlv~~~~~ia 203 (211)
T PF02786_consen 150 RAL-------------------GYVGAGTVEFAVDPDDGEFYFLEVNPR--LQREHPVTEKVTGYDLVRVQIRIA 203 (211)
T ss_dssp HHT-------------------T-EEEEEEEEEEETTTTEEEEEEEESS----TTHHHHHHHHT--HHHHHHHHH
T ss_pred Hhh-------------------CeeecceEEEEEccCccceeeecccCC--CCCcchHHHHHHCCCHHHHHHHHH
Confidence 322 23346788999998 999999999875 55555654433 346777666664
No 81
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=96.70 E-value=0.095 Score=47.89 Aligned_cols=129 Identities=14% Similarity=0.138 Sum_probs=77.5
Q ss_pred ccCcCeEEEe-CCCCCCCCceEEEcchhhhhhh---cccCcceeeccccCCccCCCcEEEEEEEEEEeccC-----ceEE
Q psy2625 119 EENTPIYILK-PCDGCQGKGIKLAMKIDDITST---MEFDSMICQQYITNPLLWNGYKFDIRFYVLITSVK-----HLRI 189 (396)
Q Consensus 119 ~~~~~~WIvK-P~~gs~GrGI~lv~~~~~i~~~---~~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~-----PL~v 189 (396)
.+-.-..|+| +..|.-|+|.+++++.+++.+. +...++|++++|+ ....+-+.+....-. |+.-
T Consensus 25 ~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~-------f~~EiSvivaR~~~G~~~~yp~~e 97 (172)
T PF02222_consen 25 ESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVP-------FDREISVIVARDQDGEIRFYPPVE 97 (172)
T ss_dssp HHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE----------ESEEEEEEEEEETTSEEEEEEEEE
T ss_pred HHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccC-------CcEEEEEEEEEcCCCCEEEEcCce
Confidence 3345678999 7779999999999999887764 3568999999995 222333333322111 2222
Q ss_pred EEEcceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q psy2625 190 YIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKT 269 (396)
Q Consensus 190 y~y~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~t 269 (396)
-.|++|..+.+..|-.. .+.+..+++++..+.
T Consensus 98 n~~~~~il~~s~~Pa~i------------------------------------------------~~~~~~~a~~ia~~i 129 (172)
T PF02222_consen 98 NVHRDGILHESIAPARI------------------------------------------------SDEVEEEAKEIARKI 129 (172)
T ss_dssp EEEETTEEEEEEESCSS-------------------------------------------------HHHHHHHHHHHHHH
T ss_pred EEEECCEEEEEECCCCC------------------------------------------------CHHHHHHHHHHHHHH
Confidence 34555555555332210 123444555554443
Q ss_pred HHhccchhhhhhhhhcccccccccceeEeeeEEEecCCCC-eEEEEeeCCCCC
Q psy2625 270 VLTGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCN-PYLLEINKNASL 321 (396)
Q Consensus 270 l~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~k-pWLLEVN~sPsl 321 (396)
+.+. +...+|++.|.++.++. .|+-||-..|.-
T Consensus 130 ~~~l-------------------~~vGv~~VE~Fv~~~g~~v~vNEiaPRpHn 163 (172)
T PF02222_consen 130 AEAL-------------------DYVGVLAVEFFVTKDGDEVLVNEIAPRPHN 163 (172)
T ss_dssp HHHH-------------------TSSEEEEEEEEEETTSTEEEEEEEESS--G
T ss_pred HHHc-------------------CcEEEEEEEEEEecCCCEEEEEeccCCccC
Confidence 3322 24569999999999998 999999887754
No 82
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.52 E-value=0.016 Score=66.72 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=35.0
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-------cCcceeecccc
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-------FDSMICQQYIT 163 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-------~~~~IVQkYI~ 163 (396)
.-..|+||..+..|+|+.++++.+++...+. ..+++||+||.
T Consensus 163 gyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~ 211 (1068)
T PRK12815 163 GFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIA 211 (1068)
T ss_pred CCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccC
Confidence 3478999999999999999999988866541 25789999997
No 83
>KOG2158|consensus
Probab=96.46 E-value=0.0011 Score=68.05 Aligned_cols=61 Identities=36% Similarity=0.648 Sum_probs=56.3
Q ss_pred ccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcchHHHHHHHHHHHHHhccCCcccch
Q psy2625 290 YREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIKTNLTRDLFSILNLNESRLR 351 (396)
Q Consensus 290 ~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~d~~vk~~li~D~l~lv~~~~~~~~ 351 (396)
....||+.+|+|++. +..+||++|+|..|++..+...+..++..+...++.++.+.++++.
T Consensus 10 ~~~v~~~~~~~~~~~-~~~~~w~~~~~~~p~~~~~~~~~~~~~r~~~~~~l~~~~i~~s~~~ 70 (565)
T KOG2158|consen 10 SESVCFEVLGFDILL-RKLKPWLLEINRAPSFGTDQKIDYDVKRGVLLNALKLLNIRTSDKR 70 (565)
T ss_pred ceeeehHhhhhhhhh-hhcccccchhhcCCCCCCCcCcchhhhhhhhhhcccccCCCccchh
Confidence 457899999999999 9999999999999999999999999999999999999988877755
No 84
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=96.13 E-value=0.033 Score=55.51 Aligned_cols=50 Identities=28% Similarity=0.454 Sum_probs=34.9
Q ss_pred hhccCcCeEEEeCCCCCCCCceEEEcchhhhhhhcccCcceeeccccCCccCCCcEEEEEE
Q psy2625 117 EVEENTPIYILKPCDGCQGKGIKLAMKIDDITSTMEFDSMICQQYITNPLLWNGYKFDIRF 177 (396)
Q Consensus 117 ~~~~~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~~~~~IVQkYI~~PlLi~GrKFDlRv 177 (396)
.+.....+.|+||..|+.|- +-++.--+++. ...+|+|+||+ |+++..-+
T Consensus 144 ~~~~gekt~IlKPv~GaGG~-~el~~~~Ee~~----~~~~i~Qefi~------G~p~Svs~ 193 (389)
T COG2232 144 PLEEGEKTLILKPVSGAGGL-VELVKFDEEDP----PPGFIFQEFIE------GRPVSVSF 193 (389)
T ss_pred hhhhcceeeEEeeccCCCce-eeecccccccC----CcceehhhhcC------CceeEEEE
Confidence 34556788999999998885 33333223332 26899999998 99887654
No 85
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=96.04 E-value=0.11 Score=51.71 Aligned_cols=33 Identities=27% Similarity=0.540 Sum_probs=26.1
Q ss_pred eEeeeEEEecCC--CCeEEEEeeCCCCCCCCCcch
Q psy2625 296 QLLGFDIILDSH--CNPYLLEINKNASLKRPTSID 328 (396)
Q Consensus 296 El~G~D~llD~~--~kpWLLEVN~sPsl~~~s~~d 328 (396)
.|||||+++++. ++.++|.||..||+..-....
T Consensus 264 ~LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp~f~ 298 (307)
T PF05770_consen 264 TLFGFDVIRENGTGGRYYVIDINYFPGYKKVPDFE 298 (307)
T ss_dssp SEEEEEEEEGCCT-SSEEEEEEEES--TTTSCTHH
T ss_pred ceeeeEEEEEcCCCCcEEEEEeccCCCccCCCChH
Confidence 399999999975 589999999999998775543
No 86
>KOG0238|consensus
Probab=95.55 E-value=0.26 Score=51.83 Aligned_cols=159 Identities=18% Similarity=0.270 Sum_probs=98.3
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhc-----------ccCcceeeccccCCccCCCcEEEEEEEEEEeccCceEE
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTM-----------EFDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRI 189 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----------~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~v 189 (396)
-.-.-++|+..|..|+|..++.+.+++...+ .+..+++.+||++| | ++-+-|+-... .--+
T Consensus 147 IgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~np-----R--HiEvQv~gD~h-Gnav 218 (670)
T KOG0238|consen 147 IGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNP-----R--HIEVQVFGDKH-GNAV 218 (670)
T ss_pred cCCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCC-----c--eEEEEEEecCC-CcEE
Confidence 3446789999999999999999988876543 36788999999988 3 34444444332 2233
Q ss_pred EEEcceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCC-HHHHHHHHHHHHHH
Q psy2625 190 YIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVD-LNALYARIHDIIVK 268 (396)
Q Consensus 190 y~y~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d-~~~l~~~I~~iI~~ 268 (396)
|++. |=| |+|+.+. +.+++..... .+++...+.+..+.
T Consensus 219 ~l~E----RdC----------------------SvQRRnQ---------------KiiEEaPap~l~~e~R~~lgeaAv~ 257 (670)
T KOG0238|consen 219 HLGE----RDC----------------------SVQRRNQ---------------KIIEEAPAPNLPEETRRALGEAAVR 257 (670)
T ss_pred Eecc----ccc----------------------chhhhhh---------------hhhhcCCCCCCCHHHHHHHHHHHHH
Confidence 4322 111 3443222 2222211111 24566666666554
Q ss_pred HHHhccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcchHHHH-HHHHHHHHHhccCCc
Q psy2625 269 TVLTGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIK-TNLTRDLFSILNLNE 347 (396)
Q Consensus 269 tl~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~d~~vk-~~li~D~l~lv~~~~ 347 (396)
+..++- | ...+ -+.|++|++...+++|+|+. +...+|+.+-+. .+|++-.+++..-.+
T Consensus 258 aa~avg------Y--------~~aG-----TVEFi~D~~~~FyFmEmNTR--LQVEHPvTEmItg~DLVewqiRvA~ge~ 316 (670)
T KOG0238|consen 258 AAKAVG------Y--------VGAG-----TVEFIVDSKDNFYFMEMNTR--LQVEHPVTEMITGTDLVEWQIRVAAGEP 316 (670)
T ss_pred HHHhhC------C--------cccc-----eEEEEEcCCCcEEEEEeece--eeecccchhhccchHHHHHHHHHhcCCC
Confidence 443331 0 0112 46899999999999999995 666667665554 478899999876554
Q ss_pred cc
Q psy2625 348 SR 349 (396)
Q Consensus 348 ~~ 349 (396)
.+
T Consensus 317 lp 318 (670)
T KOG0238|consen 317 LP 318 (670)
T ss_pred CC
Confidence 33
No 87
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=95.39 E-value=0.11 Score=51.62 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=45.3
Q ss_pred hhhhccCcCeEEEeCCCCCCCCceEEEcchhhhhhhc---------ccCcceeeccccCCccCCCcEEEEEEEEEE
Q psy2625 115 TTEVEENTPIYILKPCDGCQGKGIKLAMKIDDITSTM---------EFDSMICQQYITNPLLWNGYKFDIRFYVLI 181 (396)
Q Consensus 115 ~~~~~~~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~---------~~~~~IVQkYI~~PlLi~GrKFDlRvyVLV 181 (396)
......-.-.-++||.++|.|+|-.++++++++.+.- ...+.||..+|+ ||+-+-+|.
T Consensus 142 ~~a~~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~---------fd~EiTlLt 208 (394)
T COG0027 142 RAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVK---------FDFEITLLT 208 (394)
T ss_pred HHHHHHcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEec---------ceEEEEEEE
Confidence 3344555667799999999999999999999997642 256788998884 888876664
No 88
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=94.80 E-value=0.075 Score=55.44 Aligned_cols=82 Identities=22% Similarity=0.286 Sum_probs=51.3
Q ss_pred hhhhccCcCeEEEeCCCCCCCCceEEEcchh-----hhhhhcccCcceeeccccCCccC-----CCcEEEEEEEEEEecc
Q psy2625 115 TTEVEENTPIYILKPCDGCQGKGIKLAMKID-----DITSTMEFDSMICQQYITNPLLW-----NGYKFDIRFYVLITSV 184 (396)
Q Consensus 115 ~~~~~~~~~~WIvKP~~gs~GrGI~lv~~~~-----~i~~~~~~~~~IVQkYI~~PlLi-----~GrKFDlRvyVLVts~ 184 (396)
......+...||+||..+..|+||++=...+ ++.+..-.++||+|+|+..+-+- +|. +.+.-+...+
T Consensus 331 ~~~~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~~~~yilQe~v~~~~~~~~~~~dg~-~~~~~~~~~~-- 407 (445)
T PF14403_consen 331 VEFAIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAAREPYILQEYVRPPREPMPAFEDGE-VVFEEYPYDS-- 407 (445)
T ss_pred HHHHHhchhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHhcCCcEEEEEecCCccccccccCCc-eeEeeeeeec--
Confidence 3445678899999999999999999875432 22232235699999999743221 343 2222222222
Q ss_pred CceEEEEEc----ceeEeeccc
Q psy2625 185 KHLRIYIYN----EGIVRLATE 202 (396)
Q Consensus 185 ~PL~vy~y~----~g~vRfat~ 202 (396)
+| |+|. +.++|+++.
T Consensus 408 g~---fly~~~~~G~~tR~g~~ 426 (445)
T PF14403_consen 408 GP---FLYGGKFAGCYTRLGTG 426 (445)
T ss_pred cc---eeECCEEEEEEEEeccC
Confidence 23 6665 567777754
No 89
>KOG0369|consensus
Probab=94.76 E-value=0.19 Score=54.28 Aligned_cols=47 Identities=17% Similarity=0.416 Sum_probs=39.5
Q ss_pred ccCcCeEEEeCCCCCCCCceEEEcchhhhhhhc-----------ccCcceeeccccCC
Q psy2625 119 EENTPIYILKPCDGCQGKGIKLAMKIDDITSTM-----------EFDSMICQQYITNP 165 (396)
Q Consensus 119 ~~~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----------~~~~~IVQkYI~~P 165 (396)
+...-..|+|.+.|..|||+.++++.+++.+.+ .++.+.|.++|++|
T Consensus 181 k~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekP 238 (1176)
T KOG0369|consen 181 KEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKP 238 (1176)
T ss_pred HhcCCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCc
Confidence 445667899999999999999999988876543 46788999999988
No 90
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=94.66 E-value=0.52 Score=48.67 Aligned_cols=169 Identities=14% Similarity=0.217 Sum_probs=89.3
Q ss_pred hhccCcCeEEEeCCCCCCCCceEEEcchhhhhhhc----cc-------CcceeeccccCCccCCCcEEEEEEEEEEeccC
Q psy2625 117 EVEENTPIYILKPCDGCQGKGIKLAMKIDDITSTM----EF-------DSMICQQYITNPLLWNGYKFDIRFYVLITSVK 185 (396)
Q Consensus 117 ~~~~~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~----~~-------~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~ 185 (396)
.+.+....|++||...+.|+|+.++.+.++..... .. .+.||.+|++ |-.|.+=+ ++...
T Consensus 133 yi~~~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~------GeE~S~~a--~~DG~- 203 (428)
T COG0151 133 YIDEKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLD------GEEFSLQA--FVDGK- 203 (428)
T ss_pred HHHHcCCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEeccc------ceEEEEEE--EEcCC-
Confidence 34556667999999999999999998876654421 11 4578888887 88666544 33321
Q ss_pred ceEEEEEcceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHH-H
Q psy2625 186 HLRIYIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIH-D 264 (396)
Q Consensus 186 PL~vy~y~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~-~ 264 (396)
.++. -..++=...-|+... .++-. .+.+.+. ...-.+.+++++. +
T Consensus 204 --~v~p--~p~aQDhKra~dgD~-------------------GPNTG---GMGaysp--------~P~~t~e~~~~~~~~ 249 (428)
T COG0151 204 --TVIP--MPTAQDHKRAYDGDT-------------------GPNTG---GMGAYSP--------APFITDEVVERAVEE 249 (428)
T ss_pred --eEEE--CccccccccccCCCC-------------------CCCCC---CCCCCCC--------CCCCCHHHHHHHHHH
Confidence 1110 000000000111100 00000 0111100 0011244555554 6
Q ss_pred HHHHHHHhccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcchHHHHHHHHHHHHHhc
Q psy2625 265 IIVKTVLTGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIKTNLTRDLFSIL 343 (396)
Q Consensus 265 iI~~tl~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~d~~vk~~li~D~l~lv 343 (396)
++..|+...... ......+|=.=+||+.++ |.+||.|+.=+=.....+...++.+|++-++.++
T Consensus 250 Iv~ptv~gm~~E--------------G~~f~GvLy~glMlt~~G-PkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~ 313 (428)
T COG0151 250 IVEPTVEGMAKE--------------GYPFRGVLYAGLMLTADG-PKVIEFNARFGDPETQVVLPLLESDLVELLLAAV 313 (428)
T ss_pred HHHHHHHHHHHc--------------CCCceEEEEeEEEEcCCC-cEEEEEecccCChhHHHHHHhccccHHHHHHHHH
Confidence 666666655432 123344666789999999 9999999974433344444455555555555444
No 91
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=94.43 E-value=0.28 Score=54.08 Aligned_cols=136 Identities=18% Similarity=0.272 Sum_probs=82.1
Q ss_pred ccCcCeEEEeCCCCCCCCceEEEcchhhhhhhc-----------ccCcceeeccccCCccCCCcEEEEEEEEEEeccCce
Q psy2625 119 EENTPIYILKPCDGCQGKGIKLAMKIDDITSTM-----------EFDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHL 187 (396)
Q Consensus 119 ~~~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----------~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL 187 (396)
++..-..|+|.+.|..|||..++++.+++.+.+ ..+...|.+||++|- +|-+-+|-... .-
T Consensus 155 ~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pk-------HIEVQiLgD~~-Gn 226 (1149)
T COG1038 155 EEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPK-------HIEVQILGDTH-GN 226 (1149)
T ss_pred HhcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcc-------eeEEEEeecCC-CC
Confidence 335567899999999999999999988876543 367788999999882 44444444332 12
Q ss_pred EEEEEcceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy2625 188 RIYIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIV 267 (396)
Q Consensus 188 ~vy~y~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~ 267 (396)
.+.+|. |= .|+|+.+.....-.. . ... ...+..+|++..+
T Consensus 227 vvHLfE----RD----------------------CSvQRRhQKVVE~AP------------a-~~L-~~~~R~~ic~~Av 266 (1149)
T COG1038 227 VVHLFE----RD----------------------CSVQRRHQKVVEVAP------------A-PYL-SPELRDEICDDAV 266 (1149)
T ss_pred EEEEee----cc----------------------cchhhccceeEEecC------------C-CCC-CHHHHHHHHHHHH
Confidence 233322 11 244544433321100 0 111 2356777777666
Q ss_pred HHHHhccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCC
Q psy2625 268 KTVLTGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASL 321 (396)
Q Consensus 268 ~tl~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl 321 (396)
+....+- | ...+ -+.|++|++++-++||||..=-.
T Consensus 267 kla~~~~------Y--------~~AG-----TvEFLvd~~~~fyFIEvNPRiQV 301 (1149)
T COG1038 267 KLARNIG------Y--------INAG-----TVEFLVDEDGKFYFIEVNPRIQV 301 (1149)
T ss_pred HHHHHcC------C--------cccc-----eEEEEEcCCCcEEEEEecCceee
Confidence 6554432 0 0112 46789999999999999865443
No 92
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=93.57 E-value=1.3 Score=41.31 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=37.7
Q ss_pred cccCCChhhhhccCcCeEEEeCCCCCCCCceEEEcchhhhhhhc----ccCcc-eeeccccCCccCCCcEEEEEEEEE
Q psy2625 108 NERKPNVTTEVEENTPIYILKPCDGCQGKGIKLAMKIDDITSTM----EFDSM-ICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 108 ~~~~~~~~~~~~~~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~----~~~~~-IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
+...|+...-+....-..++|=...++|-|-..+++..++..+. -...| .+..|| ..|+|||+--.
T Consensus 36 Qt~ypnh~em~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi~sll~~~~~Y~T~EPfI-------d~kyDirvqkI 106 (203)
T PF02750_consen 36 QTYYPNHREMLSAPRFPVVVKVGHAHAGMGKVKVDNQQDFQDIASLLAITKDYATTEPFI-------DAKYDIRVQKI 106 (203)
T ss_dssp -EEESSGGGGCS-SSSSEEEEESS-STTTTEEEE-SHHHHHHHHHHHHHHTS-EEEEE----------EEEEEEEEEE
T ss_pred eeecCChhhhccCCCCCEEEEEccccCceeEEEEccHHHHHHHHHHHHhcCceEEeeccc-------cceeEEEEEEE
Confidence 34444433333335668999999999999999999877665432 12233 344444 68999997433
No 93
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=87.69 E-value=8.2 Score=39.85 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=33.0
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-------cCcceeecccc
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-------FDSMICQQYIT 163 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-------~~~~IVQkYI~ 163 (396)
.-..|+||+.+..|-|-.++.+.+++..... ..+.+++++|.
T Consensus 150 g~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~ 198 (400)
T COG0458 150 GYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRASPVEEVLIEESII 198 (400)
T ss_pred CCCEEEecCcCCCCCceeEEeCHHHHHHHHHhccccCccccceeeeeec
Confidence 3478999999999999999999988877542 24556777765
No 94
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=81.71 E-value=1.9 Score=44.79 Aligned_cols=83 Identities=20% Similarity=0.393 Sum_probs=58.2
Q ss_pred hhccCcCeEEEeCCCCCCCCceEEEcchh--h---hhhhc--ccCcceeecccc---CCccCCC----cEEEEEEEEEEe
Q psy2625 117 EVEENTPIYILKPCDGCQGKGIKLAMKID--D---ITSTM--EFDSMICQQYIT---NPLLWNG----YKFDIRFYVLIT 182 (396)
Q Consensus 117 ~~~~~~~~WIvKP~~gs~GrGI~lv~~~~--~---i~~~~--~~~~~IVQkYI~---~PlLi~G----rKFDlRvyVLVt 182 (396)
++...-.-.++||+.++.|-|..+=..++ + +.+.+ ....||.|+-++ -|..++| +..|+|+|++.+
T Consensus 360 ~VL~~l~~lViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~a~p~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~~~ 439 (488)
T COG2308 360 HVLANLSELVIKPVEGSGGYGMLVGPAASKAELAAFAERIKADPENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFALAD 439 (488)
T ss_pred HHHhchhhheEeeeccCCCCcceeccccCHHHHHHHHHHHHhChhhhcccccccccccceEECCeeccccccceeEEEEc
Confidence 33445566799999999888777654332 2 22222 356788888654 3555554 678999999987
Q ss_pred ccCceEEEEEcceeEeeccc
Q psy2625 183 SVKHLRIYIYNEGIVRLATE 202 (396)
Q Consensus 183 s~~PL~vy~y~~g~vRfat~ 202 (396)
. -.+|+..+|+.|++..
T Consensus 440 ~---~~~~v~pGGLtRVal~ 456 (488)
T COG2308 440 R---DGVQVMPGGLTRVALR 456 (488)
T ss_pred C---CceEEcccceeeeeec
Confidence 5 4589999999999976
No 95
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=80.68 E-value=1.7 Score=43.82 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=29.9
Q ss_pred ccceeEeeeEEEecCCCCeEEEEeeCCCCCC-CCCcchHHHHHHHHHHHHHhc
Q psy2625 292 EACFQLLGFDIILDSHCNPYLLEINKNASLK-RPTSIDKIIKTNLTRDLFSIL 343 (396)
Q Consensus 292 ~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~-~~s~~d~~vk~~li~D~l~lv 343 (396)
.....++|+|+..|.+|++|+||.|+...-. ...-.+..+...++-+++.-.
T Consensus 65 ~~~~~~~g~Dl~r~~dG~w~VleDn~~~PsG~gyalenR~~~~r~~p~l~~~~ 117 (330)
T PF04174_consen 65 GVRLHFYGADLVRDPDGRWRVLEDNTRAPSGLGYALENRRAMSRVFPELFRDA 117 (330)
T ss_dssp G-S-SEEEEEEEE-SSS-EEEEEEE-SS---HHHHHHHHHHHHHH-HHHHHHS
T ss_pred CeEEEEEEEeeeECCCCCEEEEEecCCCCcHHHHHHHHHHHHHHhChhhhhhc
Confidence 3456699999999999999999999974333 222334445555555555543
No 96
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=77.55 E-value=4.2 Score=42.10 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=39.5
Q ss_pred eEEEeCCCCCCCCceEEEcchhhhhh---hcccCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 124 IYILKPCDGCQGKGIKLAMKIDDITS---TMEFDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 124 ~WIvKP~~gs~GrGI~lv~~~~~i~~---~~~~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
.|+.||..|-.|.+|.++..-..+.. .+....+|.|+|++-| .++|.-.-|-+|++
T Consensus 309 ~yV~KPi~gREG~nV~i~~~g~~~~~~~g~y~~~~~IyQ~~~~Lp-~f~g~~~~iGsw~v 367 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEYGGESEDTDGNYAEEPRVVQQLIEWG-RFDGCYPMIGVWMV 367 (397)
T ss_pred CEEeccCCCcCCCCEEEEECCeEEeccCCCCCCCCeEEEEccCCc-ccCCcEEEEEEEEE
Confidence 59999999999999999976333322 2335789999999855 66776334444443
No 97
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=72.11 E-value=16 Score=37.38 Aligned_cols=89 Identities=22% Similarity=0.339 Sum_probs=61.6
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhc--------------ccCcceeeccccCCccCCCcEEEEEEEEEEeccCc
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTM--------------EFDSMICQQYITNPLLWNGYKFDIRFYVLITSVKH 186 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~--------------~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~P 186 (396)
...--|||..+|.-|.||+.+.+.+++..+- .-.+.|||+.|..-=.+++. | ..|
T Consensus 256 e~PfViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~a---------v--AEP 324 (403)
T TIGR02049 256 TQPYVIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEA---------V--AEP 324 (403)
T ss_pred CCCeEEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCc---------c--cCc
Confidence 5678899999999999999999999886532 13578999999622222332 1 124
Q ss_pred eEEEEEc----ceeEeecccCCCCCCCCCCCCcceeeecccc
Q psy2625 187 LRIYIYN----EGIVRLATEKYESPNETNIDNMYMHLTNYSI 224 (396)
Q Consensus 187 L~vy~y~----~g~vRfat~~Y~~~~~~nl~d~~~HLTN~si 224 (396)
+ +|+.. +|+.|+.+..=. -+|++..-||+---+.
T Consensus 325 V-VYmid~~vvggfYRvh~~Rg~---dENLNapG~~F~plaf 362 (403)
T TIGR02049 325 V-VYMIGRTVTGGFYRVHTGRGV---DENLNAPGMHFVPLSF 362 (403)
T ss_pred e-EEEECCEEeEEEEEecCCCCC---cccCCCCCCeeeeccc
Confidence 2 34333 788898876533 4688888899876554
No 98
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=68.85 E-value=73 Score=32.23 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=40.3
Q ss_pred ccCcCeEEEeCCCCCCCCceEEEcchhhhhhhcc------------cCcceeeccccCCccCCCcEEEEEE
Q psy2625 119 EENTPIYILKPCDGCQGKGIKLAMKIDDITSTME------------FDSMICQQYITNPLLWNGYKFDIRF 177 (396)
Q Consensus 119 ~~~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~------------~~~~IVQkYI~~PlLi~GrKFDlRv 177 (396)
+.-+..-|||+...-+|||-++.++.+++....+ -..+.+|+||- |-.|-+-+
T Consensus 147 eeIdr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~------G~~f~~~y 211 (361)
T COG1759 147 EEIDRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVV------GAPFYFHY 211 (361)
T ss_pred HHcCCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEee------ccceeeee
Confidence 3356799999999888999999999988755331 23678999997 77665554
No 99
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=61.07 E-value=13 Score=38.17 Aligned_cols=95 Identities=21% Similarity=0.276 Sum_probs=50.2
Q ss_pred cCcCeEEEeCCCCCCCCceEEEcchhhhhhhc--------------ccCcceeeccccCCccCCCcEEEEEEEEEEeccC
Q psy2625 120 ENTPIYILKPCDGCQGKGIKLAMKIDDITSTM--------------EFDSMICQQYITNPLLWNGYKFDIRFYVLITSVK 185 (396)
Q Consensus 120 ~~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~--------------~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~ 185 (396)
.....-|||..+|.-|.||+.+++.+++..+- .-.+.|||+.|..--.+++..-.-=+|.+=.
T Consensus 258 ~e~PfV~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~--- 334 (404)
T PF08886_consen 258 KEKPFVFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDAVAEPVVYMIDR--- 334 (404)
T ss_dssp -S---EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-----EEETTEEEEEEEEEETT---
T ss_pred CCCceEEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcchhhhhCCccccceEEEECC---
Confidence 35678899999999999999999999885431 1357899999974444555422222332210
Q ss_pred ceEEEEEcceeEeecccCCCCCCCCCCCCcceeeeccccc
Q psy2625 186 HLRIYIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSIN 225 (396)
Q Consensus 186 PL~vy~y~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sin 225 (396)
| .-+|+.|+.+..=. -.|++..-||+--.+..
T Consensus 335 ----~-vvggfyRvh~~rg~---deNLNapGm~F~plaf~ 366 (404)
T PF08886_consen 335 ----Y-VVGGFYRVHTERGV---DENLNAPGMHFVPLAFE 366 (404)
T ss_dssp ----E-EEEEEEEEES--ST---TTTTS--TT-EEEEE--
T ss_pred ----E-EEEEEEEecCCCCC---ccCCCCCCCEeeecccc
Confidence 1 12788898876543 47888888999866544
No 100
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=58.09 E-value=18 Score=39.66 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=39.0
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhh----hhcccCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDIT----STMEFDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~----~~~~~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
..|+.||..|-.|.+|.++..-..+. ..+....+|.|+|++=| .++|...-|-.|++
T Consensus 528 ~~yV~KPi~GREG~nV~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP-~f~~~~~~iGsw~v 588 (619)
T PRK10507 528 TGYAVKPIAGRCGSNIDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLP-KVDGKYIQVCTFTV 588 (619)
T ss_pred CCeEeccCCCcCCCCEEEEeCCCcEeeccCCCCCCCCeEEEEeccCc-ccCCCEEEEEEEEE
Confidence 35999999999999999997522221 12345778999999855 55665444444444
No 101
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=53.86 E-value=65 Score=32.06 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.0
Q ss_pred EeeeEEEecCC-CCeEEEEeeCCCC
Q psy2625 297 LLGFDIILDSH-CNPYLLEINKNAS 320 (396)
Q Consensus 297 l~G~D~llD~~-~kpWLLEVN~sPs 320 (396)
-|-||+-++.+ .++||||+|.--.
T Consensus 216 ~~v~DVyi~~~~~~v~LID~NPf~~ 240 (299)
T PF07065_consen 216 NYVFDVYITRDKDKVWLIDFNPFGP 240 (299)
T ss_pred CEEEEEEEcCCCCeEEEEEecCCcc
Confidence 56899999999 9999999998644
No 102
>KOG3895|consensus
Probab=45.08 E-value=2.9e+02 Score=28.51 Aligned_cols=48 Identities=8% Similarity=0.187 Sum_probs=36.2
Q ss_pred eeEeeeEEEecCCCCeEEEEeeC--CCCCCCCCcchHHHHHHHHHHHHHh
Q psy2625 295 FQLLGFDIILDSHCNPYLLEINK--NASLKRPTSIDKIIKTNLTRDLFSI 342 (396)
Q Consensus 295 FEl~G~D~llD~~~kpWLLEVN~--sPsl~~~s~~d~~vk~~li~D~l~l 342 (396)
..+..+|.+...+|+=+++|||. .|-+....+.|+.+...|+...+.-
T Consensus 343 ldICav~alhsKdGrd~i~eV~d~smpliGeh~eeDrql~~~Lvvskmaq 392 (488)
T KOG3895|consen 343 LDICAVKALHSKDGRDYIIEVMDSSMPLIGEHQEEDRQLISELVVSKMAQ 392 (488)
T ss_pred cceEEeeeeecccchhheeeeccccccccccchhHHHHHHHHHHHHHhhh
Confidence 34678999999999999999998 3666666666777766666665543
No 103
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=42.48 E-value=13 Score=37.58 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=15.3
Q ss_pred hhccCcCeEEEeCCCCCCCCceEEEcchh
Q psy2625 117 EVEENTPIYILKPCDGCQGKGIKLAMKID 145 (396)
Q Consensus 117 ~~~~~~~~WIvKP~~gs~GrGI~lv~~~~ 145 (396)
++...-..|++||+.++.|+|+.+-.+.+
T Consensus 282 ~Vl~~l~~lvvKp~~g~gg~~~~~G~~~s 310 (330)
T PF04174_consen 282 YVLANLDELVVKPADGYGGKGVYIGPKLS 310 (330)
T ss_dssp HHHHSGGGEEEEE--------EEEGGG--
T ss_pred HHHhchhhcEEEecCCCCCCcceeCCcCC
Confidence 45667788999999999999999876655
No 104
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=42.22 E-value=82 Score=33.18 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=42.7
Q ss_pred cccceeEeeeEEEecCCCCeEEEEeeCC-CCCCCCCcchHHHHHHHHHHHHHhccCC
Q psy2625 291 REACFQLLGFDIILDSHCNPYLLEINKN-ASLKRPTSIDKIIKTNLTRDLFSILNLN 346 (396)
Q Consensus 291 ~~~~FEl~G~D~llD~~~kpWLLEVN~s-Psl~~~s~~d~~vk~~li~D~l~lv~~~ 346 (396)
....-...|+|++-+.+|++|+||=|.. ||=.+..-.+.++..+++-|++.-..+.
T Consensus 141 ~g~y~H~~g~dl~R~~dG~~~VLeDn~r~PSGvsY~LenR~~~~r~~Pely~~~~vr 197 (488)
T COG2308 141 GGHYLHVCGTDLIRDPDGNFQVLEDNLRAPSGVSYALENRRAMARAFPELYEELRVR 197 (488)
T ss_pred CceEEEEeeeheeECCCCCEEEecccCcCCCchhHHHHhHHHHHHHChHHHhhcCCc
Confidence 3456678999999999999999999984 7766655556667777777777655443
No 105
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=38.89 E-value=34 Score=29.65 Aligned_cols=26 Identities=19% Similarity=0.046 Sum_probs=22.1
Q ss_pred EeeeEEEecCCCCeEEEEeeCCCCCC
Q psy2625 297 LLGFDIILDSHCNPYLLEINKNASLK 322 (396)
Q Consensus 297 l~G~D~llD~~~kpWLLEVN~sPsl~ 322 (396)
-|.+||.+.++|+..|+|+|..=+..
T Consensus 94 ~~vlDvg~~~~G~~~lVE~N~~~~sG 119 (130)
T PF14243_consen 94 AYVLDVGVTDDGGWALVEANDGWSSG 119 (130)
T ss_pred eEEEEEEEeCCCCEEEEEecCccccc
Confidence 67999999999999999999854443
No 106
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=37.85 E-value=38 Score=34.63 Aligned_cols=43 Identities=21% Similarity=0.372 Sum_probs=32.9
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhh----cccCcceeeccccCC
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITST----MEFDSMICQQYITNP 165 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~----~~~~~~IVQkYI~~P 165 (396)
..|+.||..|-.|-+|.++.+....... +..+.+|.|+|.+-|
T Consensus 297 ~~yv~KPl~gREGaNv~i~~~~~~~~~~~~G~Yg~eg~IyQe~~~Lp 343 (387)
T COG0754 297 ESYVRKPLFGREGANVSIFEDAGKVLDKADGPYGEEGMIYQEFYPLP 343 (387)
T ss_pred hhhhccccccccCCCeeEEecCCceeecCCCCccccchhhhhhccCc
Confidence 3499999999999999999874443322 346788999999744
No 107
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=37.33 E-value=27 Score=34.57 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.1
Q ss_pred eeEEEecCCCCeEEEEeeCCCC
Q psy2625 299 GFDIILDSHCNPYLLEINKNAS 320 (396)
Q Consensus 299 G~D~llD~~~kpWLLEVN~sPs 320 (396)
.|||+|..+.+.|+||||.--+
T Consensus 197 rFDFvi~~~~k~y~IE~NFY~~ 218 (286)
T PF04556_consen 197 RFDFVIKTNKKIYLIETNFYGS 218 (286)
T ss_pred EEEEEEEcCCEEEEEEEeeecC
Confidence 7999999999999999999755
No 108
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=34.25 E-value=93 Score=31.73 Aligned_cols=61 Identities=11% Similarity=0.185 Sum_probs=36.7
Q ss_pred CeEEEeCC--CCCCCC--ceEEEcchhhhhhhc----c-------c-------CcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 123 PIYILKPC--DGCQGK--GIKLAMKIDDITSTM----E-------F-------DSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 123 ~~WIvKP~--~gs~Gr--GI~lv~~~~~i~~~~----~-------~-------~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
..|++||. .|.+|. |+.+..+.+++.... . . ..++||+++. .|+.+-+-+..-
T Consensus 41 ~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~-----~g~E~~v~i~~d 115 (386)
T TIGR01016 41 GPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATD-----IDKEYYLSIVID 115 (386)
T ss_pred CcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceeecccCCCCCEeeEEEEEECcc-----CCceEEEEEEEc
Confidence 47999998 344554 899998887765432 1 0 2477888873 267665555432
Q ss_pred EeccCceE
Q psy2625 181 ITSVKHLR 188 (396)
Q Consensus 181 Vts~~PL~ 188 (396)
-....|+-
T Consensus 116 ~~~~~pvi 123 (386)
T TIGR01016 116 RSARCPVI 123 (386)
T ss_pred CCCCceEE
Confidence 22244543
No 109
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=28.37 E-value=5.3e+02 Score=24.58 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=25.1
Q ss_pred ceeEeeeEEEecCCCCeEEEEeeCCCCCCCC
Q psy2625 294 CFQLLGFDIILDSHCNPYLLEINKNASLKRP 324 (396)
Q Consensus 294 ~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~ 324 (396)
.|....+||... ++++|+=|+-..|+-...
T Consensus 194 ~f~fvRVDlY~~-~~~iyFGElTf~p~~G~~ 223 (239)
T PF14305_consen 194 GFPFVRVDLYNV-DGKIYFGELTFTPGAGFE 223 (239)
T ss_pred CCCEEEEEEEEe-CCcEEEEeeecCCCCcCC
Confidence 366889999876 568999999999998854
No 110
>PF07033 Orthopox_B11R: Orthopoxvirus B11R protein; InterPro: IPR009754 This family consists of several Orthopoxvirus B11R proteins of around 70 residues in length. The function of this family is unknown.
Probab=25.88 E-value=43 Score=25.25 Aligned_cols=30 Identities=40% Similarity=0.567 Sum_probs=19.8
Q ss_pred hhhhhcccCccCCCcccc--------------cccccccccccc
Q psy2625 58 ANKTIRRNSPIEDNDNIK--------------DKSSNQDSSNKT 87 (396)
Q Consensus 58 ~~~~~~~~~~i~~~~~~~--------------~~~sn~~~~~~~ 87 (396)
.++.|-.|--+++|+||. ..|||+++.+|-
T Consensus 17 eke~ilknve~ennkni~knhps~yirealvintss~sdsidke 60 (71)
T PF07033_consen 17 EKEEILKNVEMENNKNINKNHPSKYIREALVINTSSNSDSIDKE 60 (71)
T ss_pred HHHHHHHhhhhhccccccccCcHHHHHHHHheecCCCcchhhHH
Confidence 456666777777777765 356777776654
No 111
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=22.56 E-value=75 Score=32.97 Aligned_cols=25 Identities=36% Similarity=0.764 Sum_probs=20.8
Q ss_pred Eee-eEEEecCCCCeEEEEeeCC-CCC
Q psy2625 297 LLG-FDIILDSHCNPYLLEINKN-ASL 321 (396)
Q Consensus 297 l~G-~D~llD~~~kpWLLEVN~s-Psl 321 (396)
+|| |||..|.++.+-|||.|+- |..
T Consensus 107 lyGRfDfa~dg~g~~KllE~NADTPT~ 133 (397)
T PHA02117 107 LYGRFDLIMTPNGGPKMLEYNADTPTI 133 (397)
T ss_pred EEEEEEEEEcCCCCeEEEEecCCCCch
Confidence 554 9999999999999999983 544
No 112
>PF13635 DUF4143: Domain of unknown function (DUF4143)
Probab=21.12 E-value=84 Score=24.95 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=17.1
Q ss_pred eeEEEecCCCCeEEEEeeC
Q psy2625 299 GFDIILDSHCNPYLLEINK 317 (396)
Q Consensus 299 G~D~llD~~~kpWLLEVN~ 317 (396)
.+||++...++.+.|||-.
T Consensus 71 EVDfv~~~~~~~~~IEVK~ 89 (90)
T PF13635_consen 71 EVDFVIENGGRIIPIEVKY 89 (90)
T ss_pred EEEEEEEeCCEEEEEEEEE
Confidence 6799999999999999965
No 113
>KOG2983|consensus
Probab=20.16 E-value=5.6e+02 Score=25.45 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.5
Q ss_pred EeeeEEEecCCCCeEEEEeeCC
Q psy2625 297 LLGFDIILDSHCNPYLLEINKN 318 (396)
Q Consensus 297 l~G~D~llD~~~kpWLLEVN~s 318 (396)
-|-||+-++..+|+|||.+|.-
T Consensus 230 dfvfDVYi~k~~kv~lID~Npf 251 (334)
T KOG2983|consen 230 DFVFDVYITKERKVWLIDFNPF 251 (334)
T ss_pred CeeEEEEecCCCcEEEEeccCc
Confidence 5789999999999999998864
Done!