Query psy2625
Match_columns 396
No_of_seqs 199 out of 1277
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 21:00:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 100.0 1.2E-48 4.1E-53 392.0 16.6 207 119-344 144-358 (380)
2 4fu0_A D-alanine--D-alanine li 99.1 2.4E-09 8.2E-14 106.1 15.8 141 121-326 176-324 (357)
3 4eg0_A D-alanine--D-alanine li 99.0 2E-09 6.8E-14 104.4 14.0 141 123-327 147-292 (317)
4 3se7_A VANA; alpha-beta struct 99.0 7.1E-09 2.4E-13 102.1 16.8 146 123-326 166-317 (346)
5 2i87_A D-alanine-D-alanine lig 99.0 1.1E-08 3.9E-13 101.2 17.0 142 122-325 171-317 (364)
6 3tqt_A D-alanine--D-alanine li 99.0 1.5E-08 5E-13 101.4 17.7 141 125-327 183-329 (372)
7 1iow_A DD-ligase, DDLB, D-ALA\ 99.0 4.5E-09 1.5E-13 100.3 13.1 51 122-180 138-193 (306)
8 1e4e_A Vancomycin/teicoplanin 99.0 2E-08 6.8E-13 98.5 17.7 141 123-325 166-316 (343)
9 3i12_A D-alanine-D-alanine lig 99.0 3.6E-08 1.2E-12 97.9 19.4 142 123-326 180-327 (364)
10 3k3p_A D-alanine--D-alanine li 98.9 1.7E-08 6E-13 101.3 15.3 143 122-326 201-348 (383)
11 3e5n_A D-alanine-D-alanine lig 98.9 3E-08 1E-12 99.5 16.6 143 123-327 199-347 (386)
12 1i7n_A Synapsin II; synapse, p 98.9 8E-09 2.7E-13 101.1 11.1 140 122-336 152-299 (309)
13 2fb9_A D-alanine:D-alanine lig 98.9 1.5E-08 5E-13 98.9 12.8 51 123-181 151-207 (322)
14 1ehi_A LMDDL2, D-alanine:D-lac 98.9 6.3E-08 2.2E-12 96.6 17.5 140 123-325 175-327 (377)
15 2r85_A PURP protein PF1517; AT 98.9 1.3E-08 4.5E-13 98.3 12.0 49 123-177 127-185 (334)
16 2q7d_A Inositol-tetrakisphosph 98.8 3.9E-08 1.3E-12 97.6 14.5 52 121-180 161-214 (346)
17 1pk8_A RAT synapsin I; ATP bin 98.8 1.4E-08 4.6E-13 103.0 10.8 141 122-337 264-412 (422)
18 3r5x_A D-alanine--D-alanine li 98.8 5.1E-08 1.7E-12 93.5 14.1 50 123-180 134-188 (307)
19 2p0a_A Synapsin-3, synapsin II 98.8 1.4E-08 4.8E-13 100.7 9.8 53 123-182 170-227 (344)
20 3lwb_A D-alanine--D-alanine li 98.8 5.5E-08 1.9E-12 97.1 13.8 143 123-326 189-342 (373)
21 2pvp_A D-alanine-D-alanine lig 98.7 7.2E-08 2.5E-12 96.1 13.6 152 122-343 185-347 (367)
22 1z2n_X Inositol 1,3,4-trisphos 98.7 1.7E-07 5.9E-12 90.4 13.5 50 123-180 136-188 (324)
23 3ax6_A Phosphoribosylaminoimid 98.7 3E-07 1E-11 91.1 15.3 134 122-323 132-266 (380)
24 1uc8_A LYSX, lysine biosynthes 98.7 1.1E-08 3.7E-13 96.1 4.1 52 123-180 124-184 (280)
25 3vot_A L-amino acid ligase, BL 98.6 3.8E-07 1.3E-11 91.7 13.8 50 123-178 146-211 (425)
26 4e4t_A Phosphoribosylaminoimid 98.5 9.8E-07 3.4E-11 89.4 14.3 53 123-182 172-228 (419)
27 3q2o_A Phosphoribosylaminoimid 98.5 1.3E-06 4.4E-11 87.0 14.9 126 123-323 148-283 (389)
28 3ouz_A Biotin carboxylase; str 98.5 1.5E-06 5.2E-11 88.0 15.2 54 123-183 157-221 (446)
29 3k5i_A Phosphoribosyl-aminoimi 98.5 1.5E-06 5.2E-11 87.3 14.9 53 123-182 161-217 (403)
30 2vpq_A Acetyl-COA carboxylase; 98.5 1.9E-06 6.5E-11 87.3 15.6 55 122-183 151-216 (451)
31 1ulz_A Pyruvate carboxylase N- 98.5 2.5E-06 8.7E-11 86.4 15.7 55 122-183 151-216 (451)
32 4dim_A Phosphoribosylglycinami 98.5 1.5E-06 5.2E-11 86.4 13.7 53 121-179 143-202 (403)
33 3df7_A Putative ATP-grAsp supe 98.4 1.8E-06 6.1E-11 83.7 12.3 44 122-181 133-176 (305)
34 2z04_A Phosphoribosylaminoimid 98.4 3.5E-07 1.2E-11 90.0 7.2 53 123-182 127-184 (365)
35 3lp8_A Phosphoribosylamine-gly 98.4 7.9E-07 2.7E-11 90.6 9.8 51 121-177 157-218 (442)
36 3mjf_A Phosphoribosylamine--gl 98.4 1E-06 3.5E-11 89.5 10.5 53 122-182 142-205 (431)
37 3orq_A N5-carboxyaminoimidazol 98.4 2.6E-06 8.8E-11 84.8 13.0 54 122-182 145-202 (377)
38 1gsa_A Glutathione synthetase; 98.4 4.8E-07 1.6E-11 86.1 6.9 51 124-180 156-214 (316)
39 1kjq_A GART 2, phosphoribosylg 98.3 4.7E-06 1.6E-10 82.4 13.8 54 122-182 148-210 (391)
40 2yw2_A Phosphoribosylamine--gl 98.3 2.5E-06 8.6E-11 85.6 11.7 51 122-178 137-198 (424)
41 2ip4_A PURD, phosphoribosylami 98.3 4.3E-06 1.5E-10 83.8 13.4 52 122-181 136-194 (417)
42 1vkz_A Phosphoribosylamine--gl 98.3 6E-06 2.1E-10 82.9 13.7 52 122-181 141-203 (412)
43 3glk_A Acetyl-COA carboxylase 98.3 6.1E-06 2.1E-10 86.4 14.1 153 122-343 228-388 (540)
44 2xcl_A Phosphoribosylamine--gl 98.3 2.9E-06 9.9E-11 85.1 11.3 51 123-181 138-199 (422)
45 3jrx_A Acetyl-COA carboxylase 98.3 6.7E-06 2.3E-10 86.9 14.3 153 122-343 244-404 (587)
46 2w70_A Biotin carboxylase; lig 98.3 9.7E-06 3.3E-10 82.0 14.5 54 122-182 153-217 (449)
47 3aw8_A PURK, phosphoribosylami 98.3 8.3E-06 2.8E-10 80.3 13.6 54 122-182 131-188 (369)
48 2yrx_A Phosphoribosylglycinami 98.3 4.3E-06 1.5E-10 84.9 11.8 51 123-181 159-220 (451)
49 1w96_A ACC, acetyl-coenzyme A 98.2 1.4E-05 4.8E-10 83.6 15.6 55 122-183 234-295 (554)
50 2dzd_A Pyruvate carboxylase; b 98.2 2E-05 6.8E-10 80.1 14.8 54 122-182 157-221 (461)
51 3ln6_A Glutathione biosynthesi 98.2 4.8E-06 1.7E-10 90.3 10.3 52 121-180 519-578 (750)
52 2dwc_A PH0318, 433AA long hypo 98.2 1.1E-05 3.7E-10 81.3 12.2 52 123-181 157-217 (433)
53 2qk4_A Trifunctional purine bi 98.2 1.7E-05 5.9E-10 80.4 13.7 51 123-181 164-226 (452)
54 3t7a_A Inositol pyrophosphate 98.1 1.1E-05 3.8E-10 78.5 10.5 27 297-324 269-295 (330)
55 3vmm_A Alanine-anticapsin liga 98.1 1.6E-05 5.4E-10 81.8 12.2 45 121-165 173-234 (474)
56 2pn1_A Carbamoylphosphate synt 98.1 1.1E-05 3.8E-10 77.8 10.2 50 122-177 149-199 (331)
57 3eth_A Phosphoribosylaminoimid 98.0 6E-05 2E-09 74.8 13.8 41 122-163 114-157 (355)
58 3n6r_A Propionyl-COA carboxyla 97.9 1.5E-05 5E-10 85.7 8.1 152 123-343 153-316 (681)
59 3u9t_A MCC alpha, methylcroton 97.9 1.3E-05 4.6E-10 85.9 6.7 133 122-321 178-321 (675)
60 3ln7_A Glutathione biosynthesi 97.8 9.5E-06 3.2E-10 88.1 4.9 52 121-180 524-584 (757)
61 1a9x_A Carbamoyl phosphate syn 97.8 0.00017 5.9E-09 81.1 14.0 50 123-178 710-767 (1073)
62 3hbl_A Pyruvate carboxylase; T 97.7 0.00016 5.5E-09 81.9 12.8 56 121-183 154-220 (1150)
63 4ffl_A PYLC; amino acid, biosy 97.7 0.00012 4.2E-09 71.7 9.5 47 122-176 125-171 (363)
64 1a9x_A Carbamoyl phosphate syn 97.6 0.00075 2.6E-08 76.0 16.5 55 122-183 163-224 (1073)
65 2qf7_A Pyruvate carboxylase pr 97.6 0.00014 4.9E-09 82.4 10.7 55 122-183 171-236 (1165)
66 3va7_A KLLA0E08119P; carboxyla 97.5 0.00025 8.7E-09 80.7 10.6 54 123-183 181-245 (1236)
67 2r7k_A 5-formaminoimidazole-4- 97.5 0.00037 1.3E-08 69.3 10.3 46 123-174 151-208 (361)
68 2pbz_A Hypothetical protein; N 97.0 0.0018 6.1E-08 63.3 9.0 46 122-174 125-172 (320)
69 3n6x_A Putative glutathionylsp 96.9 0.00044 1.5E-08 71.0 3.8 82 118-203 358-453 (474)
70 2cqy_A Propionyl-COA carboxyla 96.2 0.0029 1E-07 50.4 3.7 44 122-165 45-99 (108)
71 2io8_A Bifunctional glutathion 89.3 0.27 9.2E-06 52.1 4.5 56 124-180 529-588 (619)
72 2vob_A Trypanothione synthetas 81.9 0.69 2.4E-05 49.2 3.0 54 124-178 544-601 (652)
73 1wr2_A Hypothetical protein PH 73.1 1.9 6.4E-05 39.4 2.9 41 123-163 57-117 (238)
74 3k1t_A Glutamate--cysteine lig 66.9 9.5 0.00032 38.1 6.5 93 121-224 276-382 (432)
75 3n6x_A Putative glutathionylsp 58.3 23 0.00078 36.1 7.7 53 293-345 140-193 (474)
76 4e9m_A Nucleotide-binding olig 34.3 1.8 6.2E-05 37.1 -4.2 19 307-325 105-123 (144)
77 2fp4_B Succinyl-COA ligase [GD 32.6 50 0.0017 32.6 5.3 27 124-150 42-79 (395)
78 3ufx_B Succinyl-COA synthetase 27.8 36 0.0012 33.7 3.3 41 123-163 40-95 (397)
79 2nu8_B SCS-beta, succinyl-COA 25.5 1.1E+02 0.0039 29.9 6.5 39 125-163 43-103 (388)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=100.00 E-value=1.2e-48 Score=391.95 Aligned_cols=207 Identities=29% Similarity=0.522 Sum_probs=152.7
Q ss_pred ccCcCeEEEeCCCCCCCCceEEEcchhhhhhhcc--cCcceeeccccCCccC--CCcEEEEEEEEEEeccCceEEEEEcc
Q psy2625 119 EENTPIYILKPCDGCQGKGIKLAMKIDDITSTME--FDSMICQQYITNPLLW--NGYKFDIRFYVLITSVKHLRIYIYNE 194 (396)
Q Consensus 119 ~~~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~--~~~~IVQkYI~~PlLi--~GrKFDlRvyVLVts~~PL~vy~y~~ 194 (396)
.+.+++||+||+++++|+||.++++++++.+.++ ...+|||+||++|+|| +|+|||||+||||+| ||++|+|++
T Consensus 144 ~~~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~ 221 (380)
T 3tig_A 144 NEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYRE 221 (380)
T ss_dssp TTCCCCEEEEESCC----CCBCCSCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSC
T ss_pred cCCCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcC
Confidence 4578999999999999999999999999876543 5689999999999999 999999999999998 999999999
Q ss_pred eeEeecccCCCCCCCCCCCCcceeeecccccCC-CCccccc--hhhhhHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHH
Q psy2625 195 GIVRLATEKYESPNETNIDNMYMHLTNYSINKN-SENFNED--LSKQSLERMNKFLRDVHNVDL-NALYARIHDIIVKTV 270 (396)
Q Consensus 195 g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~-~~~~~~~--~~k~sl~~l~~~L~~~~g~d~-~~l~~~I~~iI~~tl 270 (396)
|++|||+++|+ ..+++|.++||||+++||+ +++|... .++|++++|++||++..+.++ +.+|++|+++|+.++
T Consensus 222 g~~Rfa~~~y~---~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l 298 (380)
T 3tig_A 222 GVLRTSSEPYS---DTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCL 298 (380)
T ss_dssp CEEEECC-------------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHH
T ss_pred CEEEecCCCcC---ccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 99999999998 4678899999999999996 5677653 378999999999988667776 589999999999999
Q ss_pred HhccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcchHHHHHHHHHHHHHhcc
Q psy2625 271 LTGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIKTNLTRDLFSILN 344 (396)
Q Consensus 271 ~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~d~~vk~~li~D~l~lv~ 344 (396)
.|+++.+... ..+.+|||+||+|||||++++|||||||++|+++.. +.++|++++++++.
T Consensus 299 ~a~~~~i~~~--------~~~~~~FEl~G~D~lid~~l~~wllEVN~~P~~~q~------~i~~l~~~~~~iav 358 (380)
T 3tig_A 299 SCLEPAISTK--------YLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQK------LYAELCKGIVDLAI 358 (380)
T ss_dssp HHHHHHHCCT--------TSSSEECEEEEEEEEEBTTCCEEEEEEESSCCCCTT------THHHHHHHHHHHTT
T ss_pred HHHHHHhhhc--------ccCCceEEEEeEEEEEcCCCcEEEEEEeCCCCccHH------hHHHHHHHHHHHhc
Confidence 9998776321 123679999999999999999999999999999753 67888888888864
No 2
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.06 E-value=2.4e-09 Score=106.05 Aligned_cols=141 Identities=13% Similarity=0.162 Sum_probs=88.2
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhc-----ccCcceeeccccCCccCCCcEEEEEEEEEEecc---CceEEEEE
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTM-----EFDSMICQQYITNPLLWNGYKFDIRFYVLITSV---KHLRIYIY 192 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~---~PL~vy~y 192 (396)
-.-.+|+||+.++.|+|+.++++.+++...+ .+..+++|+||. |+.+.+.+ +.... -|......
T Consensus 176 lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~------G~e~~v~v--l~~~~~~~~~v~~~~~ 247 (357)
T 4fu0_A 176 LTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETIN------GFEVGCAV--LGIDELIVGRVDEIEL 247 (357)
T ss_dssp CCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCC------SEEEEEEE--EESSSEEECCCEEEEE
T ss_pred cCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhccCCeEEEEEecC------CEEEEEEE--EecCCceEEEEEEEEc
Confidence 3457999999999999999999998887644 256789999996 87666544 33221 01111111
Q ss_pred cceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q psy2625 193 NEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLT 272 (396)
Q Consensus 193 ~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~s 272 (396)
..++.++.. +|.. +...+.+- ... .+.+.++|+++..+++.+
T Consensus 248 ~~~~~d~~~-k~~~-------~~~~~~~p-----------------------------a~l-~~~~~~~i~~~A~~~~~a 289 (357)
T 4fu0_A 248 SSGFFDYTE-KYTL-------KSSKIYMP-----------------------------ARI-DAEAEKRIQEAAVTIYKA 289 (357)
T ss_dssp CHHHHTSCS-BCSS-------CCEEEESS-----------------------------CSC-CHHHHHHHHHHHHHHHHH
T ss_pred ccccccccc-cccC-------CCceEecC-----------------------------CCC-CHHHHHHHHHHHHHHHHH
Confidence 221111111 1110 00111110 011 245566777776665544
Q ss_pred ccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCc
Q psy2625 273 GYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTS 326 (396)
Q Consensus 273 a~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~ 326 (396)
. +|..+.++||++|++++||++|||+.|+|+..+-
T Consensus 290 L-------------------g~~G~~~VDf~~~~dg~~~vlEvNt~PG~t~~S~ 324 (357)
T 4fu0_A 290 L-------------------GCSGFSRVDMFYTPSGEIVFNEVNTIPGFTSHSR 324 (357)
T ss_dssp T-------------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCH
T ss_pred h-------------------CCcceEEEEEEEeCCCCEEEEEEeCCCCCCcccH
Confidence 3 3556889999999999999999999999987664
No 3
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.04 E-value=2e-09 Score=104.44 Aligned_cols=141 Identities=15% Similarity=0.134 Sum_probs=79.4
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcceeE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGIV 197 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~v 197 (396)
-.+|+||..++.|+|+.++++.+++...+. ...++||+||+. |+ ++++.|+....-|.......+++.
T Consensus 147 ~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~-----G~--E~~v~vl~~~~~~~~~i~~~~~~~ 219 (317)
T 4eg0_A 147 LPLFVKPASEGSSVAVLKVKTADALPAALSEAATHDKIVIVEKSIEG-----GG--EYTACIAGDLDLPLIKIVPAGEFY 219 (317)
T ss_dssp SCEEEEECC-----CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCS-----SE--EEEEEEETTCCCCCEEEEC-----
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCC-----Cc--EEEEEEECCcccceEEEeeCCcee
Confidence 469999999999999999999988766442 467999999962 65 667666644322321111111111
Q ss_pred eecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchh
Q psy2625 198 RLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKPI 277 (396)
Q Consensus 198 Rfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~~l 277 (396)
.+.. +|.. ....|.+-. .. .+.+.+++.+++.+++.+.
T Consensus 220 ~~~~-k~~~-------g~~~~~~P~-----------------------------~l-~~~~~~~l~~~a~~~~~~l---- 257 (317)
T 4eg0_A 220 DYHA-KYVA-------NDTQYLIPC-----------------------------GL-PAEQETELKRIARRAFDVL---- 257 (317)
T ss_dssp ------------------CEEESSC-----------------------------SS-CHHHHHHHHHHHHHHHHTT----
T ss_pred chhh-cccC-------CCeeEEcCC-----------------------------CC-CHHHHHHHHHHHHHHHHHh----
Confidence 1110 0110 001111100 01 1334556666665544332
Q ss_pred hhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcc
Q psy2625 278 LREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSI 327 (396)
Q Consensus 278 ~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~ 327 (396)
+|....++||++|.+++||+||||..|++...+.+
T Consensus 258 ---------------g~~G~~~vD~~~~~~g~~~vlEiN~~pg~t~~s~~ 292 (317)
T 4eg0_A 258 ---------------GCTDWGRADFMLDAAGNAYFLEVNTAPGMTDHSLP 292 (317)
T ss_dssp ---------------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTSHH
T ss_pred ---------------CCCceEEEEEEEeCCCCEEEEEeeCCCCCCcccHH
Confidence 24458899999999999999999999999876543
No 4
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.01 E-value=7.1e-09 Score=102.05 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=84.5
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhc-----ccCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcceeE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTM-----EFDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGIV 197 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~v 197 (396)
-.+|+||..++.|.||.++++.+++...+ ...+++||+||+ |+ ++++.++...-.+ .++ .-+..
T Consensus 166 ~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~------G~--E~~v~vl~~~~~~-~~~--~~~e~ 234 (346)
T 3se7_A 166 YPVFVKPARSGSSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI------GT--EIGCAVMGNGPEL-ITG--EVDQI 234 (346)
T ss_dssp SSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC------SE--EEEEEEEEETTEE-EEC--CCEEE
T ss_pred CCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC------CE--EEEEEEEecCCCe-EEE--eeEEE
Confidence 36999999999999999999998876644 256899999997 76 6677666543211 111 00001
Q ss_pred eecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhccch
Q psy2625 198 RLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNV-DLNALYARIHDIIVKTVLTGYKP 276 (396)
Q Consensus 198 Rfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~-d~~~l~~~I~~iI~~tl~sa~~~ 276 (396)
.....-|+ | .+.....|...... ..... -.+.+.++|.+++.+++.+.
T Consensus 235 ~~~~~~~d----------------~-~q~~~~ky~~~~~~-----------~~~pa~l~~~~~~~i~~~a~~~~~~l--- 283 (346)
T 3se7_A 235 TLSHGFFK----------------I-HQESTPESGSDNSA-----------VTVPADISTTSRSLVQDTAKAVYRAL--- 283 (346)
T ss_dssp CCC-------------------------------CGGGSC-----------EESSCCCCHHHHHHHHHHHHHHHHHH---
T ss_pred ecCCCCcC----------------c-ccchhccccCCCee-----------EEeCCCCCHHHHHHHHHHHHHHHHHh---
Confidence 11100010 0 00000000000000 00000 12345666666665555432
Q ss_pred hhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCc
Q psy2625 277 ILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTS 326 (396)
Q Consensus 277 l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~ 326 (396)
+|..++++||++|++++||+||||+.|++...+.
T Consensus 284 ----------------g~~G~~~vD~~~~~~g~~~vlEiN~rPG~t~~s~ 317 (346)
T 3se7_A 284 ----------------GCRGLSRVDLFLTEDGKVVLNEVNTFPGMTSYSR 317 (346)
T ss_dssp ----------------TCCEEEEEEEEECTTSCEEEEEEESSCCCSTTCH
T ss_pred ----------------CCceEEEEEEEEeCCCCEEEEEEeCCCCCCcccH
Confidence 2446889999999999999999999999987654
No 5
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=98.98 E-value=1.1e-08 Score=101.17 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=84.9
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEccee
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGI 196 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~ 196 (396)
.-.+|+||..++.|+||.++++.+++...+. ..+++||+||+ |+ ++++.|+... ++ . +...|-
T Consensus 171 g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~------G~--E~~v~vl~~~-~~-~--~~~~~e 238 (364)
T 2i87_A 171 NYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN------AR--EIEVAVLGND-YP-E--ATWPGE 238 (364)
T ss_dssp CSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC------CE--EEEEEEEESS-SC-E--ECCCEE
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc------Ce--EEEEEEEcCC-Cc-E--EeeeEE
Confidence 3479999999999999999999888766542 46899999997 76 6677666543 12 1 111111
Q ss_pred EeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch
Q psy2625 197 VRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKP 276 (396)
Q Consensus 197 vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~~ 276 (396)
+.....-|+. -.+|.-+. ..+.. ...-.+.+.++|.+++.+++.+.
T Consensus 239 ~~~~~~~~~~------------~~k~~~g~--~~~~~-----------------pa~l~~~~~~~i~~~a~~~~~al--- 284 (364)
T 2i87_A 239 VVKDVAFYDY------------KSKYKDGK--VQLQI-----------------PADLDEDVQLTLRNMALEAFKAT--- 284 (364)
T ss_dssp ECCSCCC-------------------------CCEES-----------------SCSSCHHHHHHHHHHHHHHHHHT---
T ss_pred EecCCCcCCH------------HHcccCCC--eeEEe-----------------CCCCCHHHHHHHHHHHHHHHHHc---
Confidence 1111011110 00110000 00000 00002345666666666555432
Q ss_pred hhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCC
Q psy2625 277 ILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPT 325 (396)
Q Consensus 277 l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s 325 (396)
+|..++++||++|++++|||||||..|++...+
T Consensus 285 ----------------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s 317 (364)
T 2i87_A 285 ----------------DCSGLVRADFFVTEDNQIYINETNAMPGFTAFS 317 (364)
T ss_dssp ----------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTS
T ss_pred ----------------CCCcEEEEEEEEecCCCEEEEEEeCCCCCCchh
Confidence 244688999999999999999999999997654
No 6
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=98.97 E-value=1.5e-08 Score=101.44 Aligned_cols=141 Identities=13% Similarity=0.141 Sum_probs=84.6
Q ss_pred EEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcceeEee
Q psy2625 125 YILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGIVRL 199 (396)
Q Consensus 125 WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~vRf 199 (396)
+||||..++.|.||.++++.+++...+. +.+++||+||+ |+ ++++-|+... .+ .+ ..-+-+..
T Consensus 183 vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~------G~--E~~v~vl~~~-~~-~~--~~~~ei~~ 250 (372)
T 3tqt_A 183 LFVKAVSLGSSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR------GR--EIECAVLGNG-AP-KA--SLPGEIIP 250 (372)
T ss_dssp EEEEESSCCSGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC------SE--EEEEEEEESS-SC-EE--CCCEEEEC
T ss_pred EEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC------CE--EEEEEEEeCC-Cc-eE--eeeEEEec
Confidence 9999999999999999999988866432 46799999997 87 5555555443 11 11 11111111
Q ss_pred cccCCCCCCCCCCCCc-ceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhh
Q psy2625 200 ATEKYESPNETNIDNM-YMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKPIL 278 (396)
Q Consensus 200 at~~Y~~~~~~nl~d~-~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~~l~ 278 (396)
...-|+... .-.... ..|.+- ... .+.+.++|.+++.+++.+.
T Consensus 251 ~~~~~d~~~-ky~~g~~~~~~~P-----------------------------a~l-~~~~~~~i~~~a~~~~~aL----- 294 (372)
T 3tqt_A 251 HHDYYSYDA-KYLDPNGATTTTS-----------------------------VDL-SESVTKQIQQIAIDAFKMV----- 294 (372)
T ss_dssp C----------------CEEESC-----------------------------CCC-CHHHHHHHHHHHHHHHHHT-----
T ss_pred CCCccchhh-cccCCCceEEEeC-----------------------------CCC-CHHHHHHHHHHHHHHHHHh-----
Confidence 111111000 000000 111110 001 2345667777766655442
Q ss_pred hhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcc
Q psy2625 279 REYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSI 327 (396)
Q Consensus 279 ~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~ 327 (396)
+|..+.++||++|++++|||+|||+.|+|+..+-+
T Consensus 295 --------------g~~G~~rvDf~~~~dg~~~vlEINt~PG~t~~S~~ 329 (372)
T 3tqt_A 295 --------------HCSGMARVDFFVTPNNKVLVNEINTIPGFTNISMY 329 (372)
T ss_dssp --------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred --------------CCccEEEEEEEEeCCCcEEEEEEECCCCcCccCHH
Confidence 35568899999999999999999999999876543
No 7
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.97 E-value=4.5e-09 Score=100.29 Aligned_cols=51 Identities=12% Similarity=0.298 Sum_probs=42.0
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
.-.+|+||..|+.|+|+.++++.+++...+. ..+++||+||+ |+ ++|+.++
T Consensus 138 ~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~------g~--e~~v~~~ 193 (306)
T 1iow_A 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS------GP--EFTVAIL 193 (306)
T ss_dssp CSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTTTCSEEEEEECCC------CC--EEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhCCCEEEEeCcC------CE--EEEEEEE
Confidence 3489999999999999999999888766442 56899999997 76 6777666
No 8
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=98.96 E-value=2e-08 Score=98.54 Aligned_cols=141 Identities=18% Similarity=0.210 Sum_probs=84.9
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcceeE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGIV 197 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~v 197 (396)
-.+|+||..++.|+||.++++.+++...+. ..+++||+||+ |+ ++++.++...-. ..+. --+-.
T Consensus 166 ~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~------G~--E~~v~vl~~~~~-~~~~--~~~ei 234 (343)
T 1e4e_A 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVS------GC--EVGCAVLGNSAA-LVVG--EVDQI 234 (343)
T ss_dssp SCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC------SE--EEEEEEEEETTC-CEEC--CCEEE
T ss_pred CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC------Ce--EEEEEEEeCCCC-eEEe--eeEEE
Confidence 479999999999999999999888766432 46899999996 76 555555554321 1111 11111
Q ss_pred eecccCCCCCCCCCC-----CCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q psy2625 198 RLATEKYESPNETNI-----DNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLT 272 (396)
Q Consensus 198 Rfat~~Y~~~~~~nl-----~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~s 272 (396)
.....-|+.. .+. .....|.+- ... .+.+.++|.+++.+++.+
T Consensus 235 ~~~~~~~~~~--~k~~~~~~~g~~~~~~p-----------------------------~~l-~~~~~~~i~~~a~~~~~a 282 (343)
T 1e4e_A 235 RLQYGIFRIH--QEVEPEKGSENAVITVP-----------------------------ADL-SAEERGRIQETVKKIYKT 282 (343)
T ss_dssp EESSSCCCGG--GSSSGGGCCSSEEECSS-----------------------------CSS-CHHHHHHHHHHHHHHHHH
T ss_pred eeCCCccCHh--hcccccCCCCCeeEEeC-----------------------------CCC-CHHHHHHHHHHHHHHHHH
Confidence 1111111100 000 000001110 001 134556666666555443
Q ss_pred ccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCC
Q psy2625 273 GYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPT 325 (396)
Q Consensus 273 a~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s 325 (396)
. +|..++++||++|.+++||+||||..|++...+
T Consensus 283 l-------------------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s 316 (343)
T 1e4e_A 283 L-------------------GCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYS 316 (343)
T ss_dssp T-------------------TCEEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred c-------------------CCceEEEEEEEEeCCCCEEEEEeeCCCCCCccc
Confidence 2 245689999999999999999999999998654
No 9
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=98.95 E-value=3.6e-08 Score=97.85 Aligned_cols=142 Identities=17% Similarity=0.212 Sum_probs=85.7
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcceeE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGIV 197 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~v 197 (396)
-.+|+||..++.|.||.++++.+++...+. ...++||+||+ |+ ++++-|+... .+ .+. .-|-+
T Consensus 180 ~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~------G~--E~~v~vl~~~-~~-~~~--~~~ei 247 (364)
T 3i12_A 180 LPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK------GR--EIECAVLGND-NP-QAS--TCGEI 247 (364)
T ss_dssp SSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC------SE--EEEEEEEESS-SC-EEE--EEEEE
T ss_pred CCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC------Ce--EEEEEEEeCC-Cc-eEe--eeEEE
Confidence 468999999999999999999988765442 46899999997 85 5566665443 12 111 11112
Q ss_pred eecccCCCCCCCCCCCCc-ceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch
Q psy2625 198 RLATEKYESPNETNIDNM-YMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKP 276 (396)
Q Consensus 198 Rfat~~Y~~~~~~nl~d~-~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~~ 276 (396)
.....-|+... .-.... ..|.+- ... .+.+.++|.+++.+++.+.
T Consensus 248 ~~~~~~~~~~~-ky~~~~~~~~~~P-----------------------------a~l-~~~~~~~i~~~a~~~~~al--- 293 (364)
T 3i12_A 248 VLNSEFYAYDT-KYIDDNGAQVVVP-----------------------------AQI-PSEVNDKIRAIAIQAYQTL--- 293 (364)
T ss_dssp ECCTTCC--TT-TTSGGGGCEEESS-----------------------------CSS-CHHHHHHHHHHHHHHHHHT---
T ss_pred ecCCCccCHHH-cccCCCceEEEeC-----------------------------CCC-CHHHHHHHHHHHHHHHHHh---
Confidence 21111111000 000000 111110 011 2345566666665554432
Q ss_pred hhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCc
Q psy2625 277 ILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTS 326 (396)
Q Consensus 277 l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~ 326 (396)
+|..+.++||++|++++||++|||+.|++...+-
T Consensus 294 ----------------g~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t~~s~ 327 (364)
T 3i12_A 294 ----------------GCAGMARVDVFLTADNEVVINEINTLPGFTNISM 327 (364)
T ss_dssp ----------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCH
T ss_pred ----------------CCceEEEEEEEEecCCCEEEEEeeCCCCCCCCCH
Confidence 3456889999999999999999999999987654
No 10
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=98.91 E-value=1.7e-08 Score=101.29 Aligned_cols=143 Identities=16% Similarity=0.188 Sum_probs=76.2
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEccee
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGI 196 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~ 196 (396)
.-.+||||..++.|.||.++++.+++...+. +..++||+||+ |+.+ ++-|+... ...++...+
T Consensus 201 g~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~------G~E~--~v~vl~d~--~~~~~~~~e-- 268 (383)
T 3k3p_A 201 IYPVFVKPANMGSSVGISKAENRTDLKQAIALALKYDSRVLIEQGVD------AREI--EVGILGNT--DVKTTLPGE-- 268 (383)
T ss_dssp CSSEEEEECC------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC------SEEE--EEEEEESS--SCEECCCEE--
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC------CeEE--EEEEEeCC--CeeEEeeEE--
Confidence 3479999999999999999999988876442 46899999997 8744 44444331 222111111
Q ss_pred EeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch
Q psy2625 197 VRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKP 276 (396)
Q Consensus 197 vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~~ 276 (396)
......-|+... .-......+.+- ... .+.+.++|.+++.+++.+.
T Consensus 269 i~~~~~~~d~~~-ky~~g~~~~~~P-----------------------------a~l-~~~~~~~i~~~a~~~~~aL--- 314 (383)
T 3k3p_A 269 IVKDVAFYDYEA-KYIDNKITMAIP-----------------------------AEI-DPVIVEKMRDYAATAFRTL--- 314 (383)
T ss_dssp EC------------------CEESS-----------------------------CCC-CHHHHHHHHHHHHHHHHHT---
T ss_pred EecCCCccchhh-cccCCCeeEEec-----------------------------CCC-CHHHHHHHHHHHHHHHHHc---
Confidence 000000011000 000000000000 001 2345666666665554432
Q ss_pred hhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCc
Q psy2625 277 ILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTS 326 (396)
Q Consensus 277 l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~ 326 (396)
+|..+.++||++|++++||++|||+.|++...+-
T Consensus 315 ----------------g~~G~~~vDf~~~~~g~~~vlEINtrPG~t~~S~ 348 (383)
T 3k3p_A 315 ----------------GCCGLSRCDFFLTEDGKVYLNELNTMPGFTQWSM 348 (383)
T ss_dssp ----------------TCCEEEEEEEEECTTCCEEEEEEESSCCCC--CH
T ss_pred ----------------CCceEEEEEEEEECCCCEEEEEeeCCCCCCcccH
Confidence 3446889999999999999999999999987654
No 11
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=98.89 E-value=3e-08 Score=99.53 Aligned_cols=143 Identities=16% Similarity=0.191 Sum_probs=84.5
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcceeE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGIV 197 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~v 197 (396)
-.+||||..++.|+||.++++.+++...+. ..+++||+||+ |+ ++++-|+.... +.+.. -|-+
T Consensus 199 ~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~------G~--E~~v~vl~~~~--~~~~~--~gei 266 (386)
T 3e5n_A 199 LPLFVKPANQGSSVGVSQVRTADAFAAALALALAYDHKVLVEAAVA------GR--EIECAVLGNAV--PHASV--CGEV 266 (386)
T ss_dssp SSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC------SE--EEEEEEECSSS--CEEEE--EEEE
T ss_pred CCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC------Ce--EEEEEEEeCCC--ceEEE--eEEE
Confidence 369999999999999999999988766442 46799999997 75 55555554321 22211 1111
Q ss_pred eecccCCCCCCCCCCC-CcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccch
Q psy2625 198 RLATEKYESPNETNID-NMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKP 276 (396)
Q Consensus 198 Rfat~~Y~~~~~~nl~-d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~~ 276 (396)
.....-|+... .-.. ....+.+. ... .+.+..+|.+++.+++.+.
T Consensus 267 ~~~~~~~d~~~-ky~~~~~~~~~~P-----------------------------a~l-~~~~~~~i~~~a~~~~~aL--- 312 (386)
T 3e5n_A 267 VVHDAFYSYAT-KYISEHGAEIVIP-----------------------------ADI-DAQTQQRIQQIAVQAYQAL--- 312 (386)
T ss_dssp CC------------------CEESS-----------------------------CSS-CHHHHHHHHHHHHHHHHHH---
T ss_pred EeCCcccchhc-ccCCCCCeEEEEC-----------------------------CCC-CHHHHHHHHHHHHHHHHHh---
Confidence 11111011000 0000 00000100 011 2345666666666555432
Q ss_pred hhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcc
Q psy2625 277 ILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSI 327 (396)
Q Consensus 277 l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~ 327 (396)
+|..+.++||++|++++||++|||+.|+++..+-+
T Consensus 313 ----------------g~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~~S~~ 347 (386)
T 3e5n_A 313 ----------------GCAGMARVDVFLCADGRIVINEVNTLPGFTRISVY 347 (386)
T ss_dssp ----------------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred ----------------CCccEEEEEEEEECCCcEEEEEeECCCCCCccCHH
Confidence 24458899999999999999999999999887543
No 12
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=98.87 E-value=8e-09 Score=101.08 Aligned_cols=140 Identities=14% Similarity=0.155 Sum_probs=86.5
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEccee
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGI 196 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~ 196 (396)
+-.-|+||..|++|+|+.++++.+++...+. ...+++|+||+ + .+|+|++|+=.. + + ++
T Consensus 152 g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~-~------g~DiRv~VvGg~-----v-~---a~ 215 (309)
T 1i7n_A 152 TFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFID-A------KYDIRVQKIGNN-----Y-K---AY 215 (309)
T ss_dssp CSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-E------EEEEEEEEETTE-----E-E---EE
T ss_pred CCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecC-C------CceEEEEEECCE-----E-E---EE
Confidence 3488999999999999999999887755442 34567999996 2 589999998432 1 1 34
Q ss_pred Eeecc-cCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc
Q psy2625 197 VRLAT-EKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYK 275 (396)
Q Consensus 197 vRfat-~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~ 275 (396)
.|-+. ..|. ||.+ +..+.. ... -++.++++.++..+
T Consensus 216 ~Rr~~~g~wr--------------tN~~----~~~~e~-----------------~~l-----~~e~~~la~~A~~a--- 252 (309)
T 1i7n_A 216 MRTSISGNWK--------------TNTG----SAMLEQ-----------------IAM-----SDRYKLWVDACSEM--- 252 (309)
T ss_dssp EEESSCTTTS--------------CSCC----CSSEEE-----------------ECC-----CHHHHHHHHHHTTG---
T ss_pred EEEcCCCCCe--------------ecCC----cceeee-----------------cCC-----CHHHHHHHHHHHHH---
Confidence 55552 3343 2321 000000 011 11223333332211
Q ss_pred hhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeC--CCCCCCCCcchHHHHHHHH
Q psy2625 276 PILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINK--NASLKRPTSIDKIIKTNLT 336 (396)
Q Consensus 276 ~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~--sPsl~~~s~~d~~vk~~li 336 (396)
+ ....++|+|++.+.++++.++|||. +|++......+......++
T Consensus 253 -~---------------gGldi~GVDll~~~~g~~~V~EVN~~~~P~~~~~~~~~~~~ia~~i 299 (309)
T 1i7n_A 253 -F---------------GGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLV 299 (309)
T ss_dssp -G---------------GCCSEEEEEEEEETTSCEEEEEEECTTCCCCSSCHHHHHHHHHHHH
T ss_pred -h---------------CCCCEEEEEEEEcCCCCEEEEEECCCCCCCccchhhhhHHHHHHHH
Confidence 1 1244899999999999999999999 9999854443433333333
No 13
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=98.87 E-value=1.5e-08 Score=98.88 Aligned_cols=51 Identities=16% Similarity=0.346 Sum_probs=40.9
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCC-cEEEEEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNG-YKFDIRFYVLI 181 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~G-rKFDlRvyVLV 181 (396)
-.+|+||..++.|.|+.++++.+++...+. ..+++||+||+ | + ++++.|+.
T Consensus 151 ~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~------G~~--E~~v~vl~ 207 (322)
T 2fb9_A 151 PPFFVKPANTGSSVGISRVERFQDLEAALALAFRYDEKAVVEKALS------PVR--ELEVGVLG 207 (322)
T ss_dssp SCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS------SCE--EEEEEEES
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC------CCe--eEEEEEEe
Confidence 379999999999999999999888776442 46899999997 7 6 55555554
No 14
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.86 E-value=6.3e-08 Score=96.56 Aligned_cols=140 Identities=13% Similarity=0.167 Sum_probs=84.6
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCC-cEEEEEEEEEEeccCceEEEEEccee
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNG-YKFDIRFYVLITSVKHLRIYIYNEGI 196 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~G-rKFDlRvyVLVts~~PL~vy~y~~g~ 196 (396)
-.+||||..++.|+||.++++.+++...+. +.+++||+||+ | + ++++-|+... ++ .+.. -+-
T Consensus 175 ~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~------G~~--E~~v~vl~~~-~~-~~~~--~~e 242 (377)
T 1ehi_A 175 NIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN------GAR--ELEVGVIGND-QP-LVSE--IGA 242 (377)
T ss_dssp SCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC------CSC--EEEEEEEESS-SC-EEEE--EEE
T ss_pred CCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC------CCc--eEEEEEEcCC-Cc-EEEe--eEE
Confidence 479999999999999999999988776442 46899999997 7 6 5566666432 22 2111 111
Q ss_pred Eeec----ccCC-CCCCCCCC-CC-cceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q psy2625 197 VRLA----TEKY-ESPNETNI-DN-MYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKT 269 (396)
Q Consensus 197 vRfa----t~~Y-~~~~~~nl-~d-~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~t 269 (396)
.... ...+ +.. ... .. ...|.+. ... .+.+.++|.+++.++
T Consensus 243 i~~~~~~~~~~~~d~~--~k~~~g~~~~~~~P-----------------------------a~l-~~~~~~~i~~~a~~~ 290 (377)
T 1ehi_A 243 HTVPNQGSGDGWYDYN--NKFVDNSAVHFQIP-----------------------------AQL-SPEVTKEVKQMALDA 290 (377)
T ss_dssp EECTTSSSSSCCCCHH--HHTTCCTTCEEESS-----------------------------CCC-CHHHHHHHHHHHHHH
T ss_pred EEecCCCCcCceeCHH--hcccCCCCeeEEeC-----------------------------CCC-CHHHHHHHHHHHHHH
Confidence 1111 0101 000 000 00 0011110 001 234566666666655
Q ss_pred HHhccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCC
Q psy2625 270 VLTGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPT 325 (396)
Q Consensus 270 l~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s 325 (396)
+.+. +|..+.++||++|.+++|||||||..|++...+
T Consensus 291 ~~al-------------------g~~G~~~vD~~~~~~g~~~vlEiN~rpg~t~~s 327 (377)
T 1ehi_A 291 YKVL-------------------NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMS 327 (377)
T ss_dssp HHHT-------------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred HHHc-------------------CCCcEEEEEEEEeCCCCEEEEEEeCCCCCCccc
Confidence 5432 244688999999999999999999999987654
No 15
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=98.86 E-value=1.3e-08 Score=98.27 Aligned_cols=49 Identities=24% Similarity=0.356 Sum_probs=35.9
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhc----------ccCcceeeccccCCccCCCcEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTM----------EFDSMICQQYITNPLLWNGYKFDIRF 177 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~----------~~~~~IVQkYI~~PlLi~GrKFDlRv 177 (396)
..+|+||..|+.|+||.++++.+++...+ ...+++||+||+ |..+++.+
T Consensus 127 ~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~------G~e~~~~~ 185 (334)
T 2r85_A 127 KPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVL------GVPVYPHY 185 (334)
T ss_dssp SCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCC------CEEEEEEE
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccC------CceeEEEE
Confidence 57999999999999999999988776543 126899999997 88877443
No 16
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=98.83 E-value=3.9e-08 Score=97.55 Aligned_cols=52 Identities=13% Similarity=0.248 Sum_probs=40.6
Q ss_pred CcCeEEEeCCC--CCCCCceEEEcchhhhhhhcccCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 121 NTPIYILKPCD--GCQGKGIKLAMKIDDITSTMEFDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 121 ~~~~WIvKP~~--gs~GrGI~lv~~~~~i~~~~~~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
-.-..|+||.. |+.|.|+.++.+.+++... ..+++||+||..+ |+ |+|+||+
T Consensus 161 lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~--~~~~lvQefI~~~----G~--dirv~Vv 214 (346)
T 2q7d_A 161 LTFPFICKTRVAHGTNSHEMAIVFNQEGLNAI--QPPCVVQNFINHN----AV--LYKVFVV 214 (346)
T ss_dssp CCSSEEEECSBCSSTTCCEEEEECSGGGTTC----CCEEEEECCCCT----TE--EEEEEEE
T ss_pred CCCCEEEEecCCCcceeeeeEEecCHHHHHhc--CCCEEEEEeeCCC----Ce--EEEEEEE
Confidence 34589999985 4558899999998887653 4679999999743 64 9999997
No 17
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=98.81 E-value=1.4e-08 Score=103.00 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=87.6
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEccee
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGI 196 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~ 196 (396)
.-.-|+||..|++|+|+.++++.+++...++ ...+++|+||+ ..+|+|++|+=.. + + ++
T Consensus 264 g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-------~g~DIRv~VVGg~-----v-v---a~ 327 (422)
T 1pk8_A 264 TYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-------AKYDVRVQKIGQN-----Y-K---AY 327 (422)
T ss_dssp SSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-------EEEEEEEEEETTE-----E-E---EE
T ss_pred CCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-------CCceEEEEEECCE-----E-E---EE
Confidence 3488999999999999999999887765442 34567999996 2589999998432 1 1 34
Q ss_pred Eeec-ccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccc
Q psy2625 197 VRLA-TEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYK 275 (396)
Q Consensus 197 vRfa-t~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~ 275 (396)
.|-+ ...|. ||.. +..+.. ... -+++++++.++..+.
T Consensus 328 ~Rr~~~g~Wr--------------tNvg----~g~~e~-----------------i~l-----t~e~~elA~kAaka~-- 365 (422)
T 1pk8_A 328 MRTSVSGNWK--------------TNTG----SAMLEQ-----------------IAM-----SDRYKLWVDTCSEIF-- 365 (422)
T ss_dssp EEEESSSCSS--------------TTSS----CEEEEE-----------------ECC-----CHHHHHHHHHHTTGG--
T ss_pred EEEcCCCCce--------------eccC----ceeeee-----------------eCC-----CHHHHHHHHHHHHHh--
Confidence 5554 33344 2221 000000 011 112333443332221
Q ss_pred hhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeC--CCCCCCCCcchHHHHHHHHH
Q psy2625 276 PILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINK--NASLKRPTSIDKIIKTNLTR 337 (396)
Q Consensus 276 ~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~--sPsl~~~s~~d~~vk~~li~ 337 (396)
...+++|+|++.+.+++++++|||. +|.+......+......++-
T Consensus 366 -----------------gGldiaGVDlL~s~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~ii 412 (422)
T 1pk8_A 366 -----------------GGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVV 412 (422)
T ss_dssp -----------------GCCSEEEEEEEEETTSCEEEEEEECTTCCCCTTCHHHHHHHHHHHHH
T ss_pred -----------------CCCCEEEEEEEEcCCCCEEEEEECCCCCCCccchhhhHHHHHHHHHH
Confidence 1244899999999999999999999 99998554444433344333
No 18
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.80 E-value=5.1e-08 Score=93.51 Aligned_cols=50 Identities=24% Similarity=0.473 Sum_probs=37.1
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
-.+|+||..++.|+||.++.+.+++...+. ..+++||+||+ |+ ++++.++
T Consensus 134 ~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~------G~--e~~v~v~ 188 (307)
T 3r5x_A 134 FPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEWDSEVVIEKYIK------GE--EITCSIF 188 (307)
T ss_dssp SSEEEEECC----CCCEEECSHHHHHHHHHHHHHHCSEEEEEECCC------SE--EEEEEEE
T ss_pred CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCEEEECCcC------CE--EEEEEEE
Confidence 369999999999999999999888765442 46899999997 75 6777663
No 19
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=98.79 E-value=1.4e-08 Score=100.69 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=42.6
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEe
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLIT 182 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVt 182 (396)
-.-|+||..|++|+|+.++++.+++...+. ...+++|+||+ + .+|+|++|+=.
T Consensus 170 ~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~-~------g~DiRv~VVGg 227 (344)
T 2p0a_A 170 FPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAFID-S------KYDIRIQKIGS 227 (344)
T ss_dssp SSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-E------EEEEEEEEETT
T ss_pred CCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhccCCeEEEEeccC-C------CccEEEEEECC
Confidence 488999999999999999999887765332 34567999996 2 58999999843
No 20
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=98.78 E-value=5.5e-08 Score=97.13 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=85.5
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcceeE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGIV 197 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~v 197 (396)
-.+||||..++.|.||.++++.+++...+. +..++||+||+ |+ ++++-|+........++ .-+-+
T Consensus 189 ~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~------G~--E~~v~vl~~~~~~~~~~--~~~ei 258 (373)
T 3lwb_A 189 LPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS------GR--ELECGVLEMPDGTLEAS--TLGEI 258 (373)
T ss_dssp SCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE------EE--EEEEEEEECTTSCEEEC--CCEEE
T ss_pred CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC------Ce--EEEEEEEECCCCceEEe--eeeEE
Confidence 468999999999999999999988866442 56899999997 76 55555554431111111 11222
Q ss_pred eec--cc----CCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q psy2625 198 RLA--TE----KYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVL 271 (396)
Q Consensus 198 Rfa--t~----~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~ 271 (396)
... .. -|+.. ..-..+...|.+. ..-.+.+.++|.+++.+++.
T Consensus 259 ~~~~~~~~~~~~~d~~-~ky~~~~~~~~~P------------------------------a~l~~~~~~~i~~~a~~~~~ 307 (373)
T 3lwb_A 259 RVAGVRGREDSFYDFA-TKYLDDAAELDVP------------------------------AKVDDQVAEAIRQLAIRAFA 307 (373)
T ss_dssp ECCSTTCSEESSSCHH-HHHTCTTCEEESS------------------------------CCCCHHHHHHHHHHHHHHHH
T ss_pred EccCCCCccccccchh-hcccCCCceEEeC------------------------------CCCCHHHHHHHHHHHHHHHH
Confidence 221 11 01000 0000000001100 00124566777777666554
Q ss_pred hccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCc
Q psy2625 272 TGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTS 326 (396)
Q Consensus 272 sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~ 326 (396)
+. +|..+.++||++|+++. ||+|||+.|++...+-
T Consensus 308 aL-------------------g~~G~~~vDf~~~~dg~-~vlEIN~~PG~t~~S~ 342 (373)
T 3lwb_A 308 AI-------------------DCRGLARVDFFLTDDGP-VINEINTMPGFTTISM 342 (373)
T ss_dssp HT-------------------TCCSEEEEEEEEETTEE-EEEEEESSCCCSTTSH
T ss_pred Hh-------------------CCccEEEEEEEEECCCC-EEEEecCCCCCCcccH
Confidence 43 24458899999999998 9999999999987653
No 21
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=98.75 E-value=7.2e-08 Score=96.11 Aligned_cols=152 Identities=14% Similarity=0.168 Sum_probs=89.9
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----cCcceeeccccCCccCCC-cEEE-EEEEEEEeccCceEEEEE--
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----FDSMICQQYITNPLLWNG-YKFD-IRFYVLITSVKHLRIYIY-- 192 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----~~~~IVQkYI~~PlLi~G-rKFD-lRvyVLVts~~PL~vy~y-- 192 (396)
.-.+|+||..++.|.|+.++++.+++...+. ..+++||+||+ | +.|. +++.| .. -..++..
T Consensus 185 g~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~------G~~E~svi~v~v--~g--~~~~~~~ei 254 (367)
T 2pvp_A 185 NFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ------GVKEYNLAGCKI--KK--DFCFSYIEE 254 (367)
T ss_dssp CSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT------TCEEEEEEEEEE--TT--EEEEEEEEE
T ss_pred CCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC------CCceeeEEEEEE--CC--EEEEEEEEE
Confidence 3479999999999999999999888765432 46899999997 8 7655 55554 21 1122211
Q ss_pred --cceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy2625 193 --NEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTV 270 (396)
Q Consensus 193 --~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl 270 (396)
..++..+. .+|.. ....|.+. ... .+.+.++|.+++.+++
T Consensus 255 ~~~~~~~d~~-~ky~~-------g~~~~~~P-----------------------------a~l-~~~~~~~i~~~a~~~~ 296 (367)
T 2pvp_A 255 PNKQEFLDFK-QKYLD-------FSRNKAPK-----------------------------ASL-SNALEEQLKENFKKLY 296 (367)
T ss_dssp TTTTEEECCC-CSSCC-------SCCCSCCC-----------------------------CCC-CHHHHHHHHHHHHHHH
T ss_pred ecCCceEccc-ccccC-------CCeeEEec-----------------------------CCC-CHHHHHHHHHHHHHHH
Confidence 01111111 01110 00001110 001 1345566666665544
Q ss_pred HhccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcchHHHHHHHHHHHHHhc
Q psy2625 271 LTGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIKTNLTRDLFSIL 343 (396)
Q Consensus 271 ~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~d~~vk~~li~D~l~lv 343 (396)
.+. +|..+.++||++| +++||+||||..|++...+-+. -..+++..++...
T Consensus 297 ~aL-------------------g~~G~~~vDf~~~-~g~~~vlEiN~rpg~t~~s~~p--~~~~l~~~li~~~ 347 (367)
T 2pvp_A 297 SDL-------------------FDGAIIRCDFFVI-ENEVYLNEINPIPGSLANYLFD--DFKTTLENLAQSL 347 (367)
T ss_dssp TTT-------------------STTCCEEEEEEEE-TTEEEEEEEESSCGGGGGGGSS--SHHHHHHHHHHHC
T ss_pred HHc-------------------CCCCEEEEEEEEE-CCeEEEEEEeCCCCCCcccccC--CHHHHHHHHHhCc
Confidence 332 3445789999999 8999999999999985443322 3355666666553
No 22
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=98.68 E-value=1.7e-07 Score=90.45 Aligned_cols=50 Identities=20% Similarity=0.444 Sum_probs=41.3
Q ss_pred CeEEEeCCCCCCC---CceEEEcchhhhhhhcccCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 123 PIYILKPCDGCQG---KGIKLAMKIDDITSTMEFDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 123 ~~WIvKP~~gs~G---rGI~lv~~~~~i~~~~~~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
-.+|+||..|+.| +|+.++.+.+++... ..++++|+||+. .| +|+|++|+
T Consensus 136 ~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~~--~~~~lvqe~i~~----~g--~~~~v~v~ 188 (324)
T 1z2n_X 136 LPFIVKPENAQGTFNAHQMKIVLEQEGIDDI--HFPCLCQHYINH----NN--KIVKVFCI 188 (324)
T ss_dssp SSEEEEESBCSSSSGGGEEEEECSGGGGTTC--CSSEEEEECCCC----TT--CEEEEEEE
T ss_pred CCEEEeeCCCCCCccceeeEEEeCHHHHhhc--CCCEEEEEccCC----CC--cEEEEEEE
Confidence 4799999999999 999999998887642 568999999973 24 69999886
No 23
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.67 E-value=3e-07 Score=91.07 Aligned_cols=134 Identities=13% Similarity=0.150 Sum_probs=79.7
Q ss_pred cCeEEEeCCCCC-CCCceEEEcchhhhhhhcccCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcceeEeec
Q psy2625 122 TPIYILKPCDGC-QGKGIKLAMKIDDITSTMEFDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNEGIVRLA 200 (396)
Q Consensus 122 ~~~WIvKP~~gs-~GrGI~lv~~~~~i~~~~~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~g~vRfa 200 (396)
.-.+|+||..++ .|+|+.++++.+++...+. .+++||+||+. | .++++.++...-....++-..+-+ +.
T Consensus 132 ~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~-~~~lvEe~i~~-----g--~e~sv~~~~~~~G~~~~~~~~~~~--~~ 201 (380)
T 3ax6_A 132 GFPVVQKARKGGYDGRGVFIIKNEKDLENAIK-GETYLEEFVEI-----E--KELAVMVARNEKGEIACYPVVEMY--FD 201 (380)
T ss_dssp CSSEEEEESCCC-----EEEECSGGGGGGCCC-SSEEEEECCCE-----E--EEEEEEEEECSSCCEEEEEEEEEC----
T ss_pred CCCEEEEecCCCCCCCCeEEECCHHHHHHHhc-CCEEEEeccCC-----C--eeEEEEEEECCCCCEEEECCeeee--ec
Confidence 347999999999 9999999999999887665 78999999961 3 478887776432222222111100 00
Q ss_pred ccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhh
Q psy2625 201 TEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKPILRE 280 (396)
Q Consensus 201 t~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~~~l~~~ 280 (396)
.. .... ..+.+-. .. .+.+.+++.+++.+++.+.
T Consensus 202 ----~~---~~~~--~~~~~p~-----------------------------~l-~~~~~~~~~~~a~~~~~~l------- 235 (380)
T 3ax6_A 202 ----ED---ANIC--DTVIAPA-----------------------------RI-EEKYSKIAREIATSVVEAL------- 235 (380)
T ss_dssp ---------------CEEEESC-----------------------------SS-CHHHHHHHHHHHHHHHHHH-------
T ss_pred ----cc---CCee--EEEECCC-----------------------------CC-CHHHHHHHHHHHHHHHHHC-------
Confidence 00 0000 0011100 01 1334556666655554432
Q ss_pred hhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCC
Q psy2625 281 YLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKR 323 (396)
Q Consensus 281 ~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~ 323 (396)
++...+++||++|.+++||++|||..|+...
T Consensus 236 ------------g~~G~~~vd~~~~~~g~~~viEiN~R~~~~~ 266 (380)
T 3ax6_A 236 ------------EGVGIFGIEMFLTKQGEILVNEIAPRPHNSG 266 (380)
T ss_dssp ------------TCCEEEEEEEEEETTSCEEEEEEESSCCGGG
T ss_pred ------------CCeEEEEEEEEEeCCCcEEEEEecCCCCCCc
Confidence 2345889999999999999999999998754
No 24
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=98.66 E-value=1.1e-08 Score=96.09 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=39.5
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhc------c---cCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTM------E---FDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~------~---~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
-.+|+||..++.|+|+.++++.+++...+ . ..+++||+||+ |..+++|++++
T Consensus 124 ~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~------~~~~e~~v~v~ 184 (280)
T 1uc8_A 124 YPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVE------KPGRDIRVFVV 184 (280)
T ss_dssp SSEEEECSBCCBCSHHHHHHHHHC------------CTTTTCEEEEECCC------CSSCCEEEEEE
T ss_pred CCEEEEECCCCCcccceecccccccchhhhhHhhhcccCCCcEEEEeccC------CCCceEEEEEE
Confidence 47999999999999999998877665432 1 46899999997 44579999886
No 25
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=98.60 E-value=3.8e-07 Score=91.73 Aligned_cols=50 Identities=18% Similarity=0.394 Sum_probs=35.8
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhc----------------ccCcceeeccccCCccCCCcEEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTM----------------EFDSMICQQYITNPLLWNGYKFDIRFY 178 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~----------------~~~~~IVQkYI~~PlLi~GrKFDlRvy 178 (396)
-.+|+||..|+.|+|+.++++.+++...+ ....+++|+||+ |..|.+.++
T Consensus 146 ~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~------G~e~sv~~~ 211 (425)
T 3vot_A 146 YPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID------GPEFAIETL 211 (425)
T ss_dssp SSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC------SCEEEEEEE
T ss_pred CcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec------CcEEEEEEE
Confidence 35899999999999999999998876543 135789999997 887777664
No 26
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=98.52 E-value=9.8e-07 Score=89.35 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=41.3
Q ss_pred CeEEEeCC-CCCCCCceEEEcchhhhhhhc---ccCcceeeccccCCccCCCcEEEEEEEEEEe
Q psy2625 123 PIYILKPC-DGCQGKGIKLAMKIDDITSTM---EFDSMICQQYITNPLLWNGYKFDIRFYVLIT 182 (396)
Q Consensus 123 ~~WIvKP~-~gs~GrGI~lv~~~~~i~~~~---~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVt 182 (396)
-.+|+||. .|+.|+|+.++++.+++...+ ...++|||+||+ + ..++.+.++..
T Consensus 172 ~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~------~-~~Eisv~v~~~ 228 (419)
T 4e4t_A 172 LPGILKTARLGYDGKGQVRVSTAREARDAHAALGGVPCVLEKRLP------L-KYEVSALIARG 228 (419)
T ss_dssp CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHTTTCCEEEEECCC------E-EEEEEEEEEEC
T ss_pred CCEEEEecCCCCCCCceEEECCHHHHHHHHHhcCCCcEEEeecCC------C-CeEEEEEEEEc
Confidence 46999999 899999999999998876644 357899999996 2 34566655543
No 27
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.52 E-value=1.3e-06 Score=87.00 Aligned_cols=126 Identities=12% Similarity=0.134 Sum_probs=78.8
Q ss_pred CeEEEeCCCCCC-CCceEEEcchhhhhhhc---ccCcceeeccccCCccCCC-cEEEEEEEEEEeccCceEEE-----EE
Q psy2625 123 PIYILKPCDGCQ-GKGIKLAMKIDDITSTM---EFDSMICQQYITNPLLWNG-YKFDIRFYVLITSVKHLRIY-----IY 192 (396)
Q Consensus 123 ~~WIvKP~~gs~-GrGI~lv~~~~~i~~~~---~~~~~IVQkYI~~PlLi~G-rKFDlRvyVLVts~~PL~vy-----~y 192 (396)
-.+|+||..+.. |+|+.++++.+++...+ ...+++||+||+ | + ++.+.++...-....+| .+
T Consensus 148 ~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~------g~~--E~~v~~~~~~~G~~~~~~~~e~~~ 219 (389)
T 3q2o_A 148 YPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAAECILEKWVP------FEK--EVSVIVIRSVSGETKVFPVAENIH 219 (389)
T ss_dssp SSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHHHSCEEEEECCC------CSE--EEEEEEEECTTCCEEECCCEEEEE
T ss_pred CCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCCEEEEeccc------Cce--EEEEEEEEcCCCCEEEecCeeeEE
Confidence 469999999865 89999999998876644 257899999997 4 4 56665554321111111 11
Q ss_pred cceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q psy2625 193 NEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLT 272 (396)
Q Consensus 193 ~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~s 272 (396)
..|.... +++- ... .+.+.+++.+++.+.+.+
T Consensus 220 ~~g~~~~------------------~~~p-----------------------------~~l-~~~~~~~~~~~a~~~~~~ 251 (389)
T 3q2o_A 220 VNNILHE------------------SIVP-----------------------------ARI-TEELSQKAIAYAKVLADE 251 (389)
T ss_dssp ETTEEEE------------------EEES-----------------------------CSS-CHHHHHHHHHHHHHHHHH
T ss_pred cCCceEE------------------EECC-----------------------------CCC-CHHHHHHHHHHHHHHHHH
Confidence 1111100 0000 000 123455555555544433
Q ss_pred ccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCC
Q psy2625 273 GYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKR 323 (396)
Q Consensus 273 a~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~ 323 (396)
. ++...+++||++|.+++||++|||..|+.+.
T Consensus 252 l-------------------g~~G~~~ve~~~~~dg~~~viEiNpR~~~s~ 283 (389)
T 3q2o_A 252 L-------------------ELVGTLAVEMFATADGEIYINELAPRPHNSG 283 (389)
T ss_dssp T-------------------TCCEEEEEEEEECTTSCEEEEEEESSCCGGG
T ss_pred c-------------------CCeeEEEEEEEEeCCCCEEEEEeeCCCCCch
Confidence 2 2345899999999999999999999998664
No 28
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=98.50 E-value=1.5e-06 Score=88.05 Aligned_cols=54 Identities=28% Similarity=0.391 Sum_probs=42.9
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEEEEEec
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFYVLITS 183 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts 183 (396)
-.+|+||..|+.|+|+.++++.+++...+. ..+++||+||+.| + ++.+.++...
T Consensus 157 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-----~--e~~v~v~~d~ 221 (446)
T 3ouz_A 157 YPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNP-----R--HIEVQVIGDS 221 (446)
T ss_dssp SSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSC-----E--EEEEEEEECT
T ss_pred CCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC-----c--EEEEEEEEcC
Confidence 469999999999999999999988766442 5689999999822 3 6777776554
No 29
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=98.49 E-value=1.5e-06 Score=87.31 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=40.7
Q ss_pred CeEEEeCCCCC-CCCceEEEcchhhhhhhc---ccCcceeeccccCCccCCCcEEEEEEEEEEe
Q psy2625 123 PIYILKPCDGC-QGKGIKLAMKIDDITSTM---EFDSMICQQYITNPLLWNGYKFDIRFYVLIT 182 (396)
Q Consensus 123 ~~WIvKP~~gs-~GrGI~lv~~~~~i~~~~---~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVt 182 (396)
-.+|+||..++ .|+|+.++++.+++...+ ...++|||+||+ + ..++.+.++..
T Consensus 161 ~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~------~-~~E~sv~v~~~ 217 (403)
T 3k5i_A 161 YPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALKDRPLYAEKWAY------F-KMELAVIVVKT 217 (403)
T ss_dssp SSEEEEESSSCCTTTTEEEECSTTSHHHHHHHTTTSCEEEEECCC------E-EEEEEEEEEEC
T ss_pred CCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhcCCCcEEEecCCC------C-CeEEEEEEEEc
Confidence 46999998886 999999999988876543 357899999996 1 24666666654
No 30
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=98.49 E-value=1.9e-06 Score=87.30 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=42.5
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhc-----------ccCcceeeccccCCccCCCcEEEEEEEEEEec
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTM-----------EFDSMICQQYITNPLLWNGYKFDIRFYVLITS 183 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----------~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts 183 (396)
.-.+|+||..++.|+|+.++++.+++...+ ...+++||+||+ | .-++++-++...
T Consensus 151 g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~------g-~~e~~v~v~~~~ 216 (451)
T 2vpq_A 151 GYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIE------N-FRHIEIQIVGDS 216 (451)
T ss_dssp CSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCC------S-EEEEEEEEEECT
T ss_pred CCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecC------C-CeEEEEEEEEcC
Confidence 347999999999999999999988776543 146899999997 4 126777666643
No 31
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.46 E-value=2.5e-06 Score=86.37 Aligned_cols=55 Identities=18% Similarity=0.330 Sum_probs=42.4
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhc-----------ccCcceeeccccCCccCCCcEEEEEEEEEEec
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTM-----------EFDSMICQQYITNPLLWNGYKFDIRFYVLITS 183 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~-----------~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts 183 (396)
.-.+|+||..++.|+|+.++++.+++...+ ...+++||+||+ |- -++++.++...
T Consensus 151 g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~------g~-~e~~v~v~~~~ 216 (451)
T 1ulz_A 151 GYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIE------NP-KHIEYQVLGDK 216 (451)
T ss_dssp CSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCC------SC-EEEEEEEEECT
T ss_pred CCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccc------CC-eEEEEEEEEcC
Confidence 347999999999999999999988776543 146899999997 41 26777777643
No 32
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=98.46 E-value=1.5e-06 Score=86.44 Aligned_cols=53 Identities=28% Similarity=0.402 Sum_probs=38.8
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhcc-------cCcceeeccccCCccCCCcEEEEEEEE
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTME-------FDSMICQQYITNPLLWNGYKFDIRFYV 179 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-------~~~~IVQkYI~~PlLi~GrKFDlRvyV 179 (396)
-.-.+|+||..|+.|+|+.++++.+++...+. ..+++||+||+ |..|++.+++
T Consensus 143 ~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~------g~e~sv~~~~ 202 (403)
T 4dim_A 143 LKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIE------GYEFGAQAFV 202 (403)
T ss_dssp SCSSEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCC------SEEEEEEEEE
T ss_pred CCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccC------CcEEEEEEEE
Confidence 34469999999999999999999988766442 36799999997 8888888764
No 33
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=98.40 E-value=1.8e-06 Score=83.67 Aligned_cols=44 Identities=27% Similarity=0.563 Sum_probs=32.6
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcccCcceeeccccCCccCCCcEEEEEEEEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTMEFDSMICQQYITNPLLWNGYKFDIRFYVLI 181 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~~~~~IVQkYI~~PlLi~GrKFDlRvyVLV 181 (396)
...||+||..|+.|+|+.++++ ...++++|+||+ |+ ++++.++.
T Consensus 133 ~~P~vvKP~~g~gs~Gv~~v~~--------~~~~~lvEe~I~------G~--e~sv~v~~ 176 (305)
T 3df7_A 133 DCKFIIKPRTACAGEGIGFSDE--------VPDGHIAQEFIE------GI--NLSVSLAV 176 (305)
T ss_dssp SSSEEEEESSCC----CBCCSS--------CCTTEEEEECCC------SE--EEEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEEec--------CCCCEEEEeccC------Cc--EEEEEEEe
Confidence 4569999999999999999987 367899999997 76 56666664
No 34
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=98.40 E-value=3.5e-07 Score=89.97 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=21.8
Q ss_pred CeEEEeCCCCC-CCCceEEEcchhhhhhhc----ccCcceeeccccCCccCCCcEEEEEEEEEEe
Q psy2625 123 PIYILKPCDGC-QGKGIKLAMKIDDITSTM----EFDSMICQQYITNPLLWNGYKFDIRFYVLIT 182 (396)
Q Consensus 123 ~~WIvKP~~gs-~GrGI~lv~~~~~i~~~~----~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVt 182 (396)
-.+|+||..++ .|+|+.++++.+++...+ ...+++||+||+. |+ ++++.++..
T Consensus 127 ~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~lvEe~i~~-----g~--e~sv~~~~d 184 (365)
T 2z04_A 127 LPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHDKEESFIIEEFVKF-----EA--EISCIGVRD 184 (365)
T ss_dssp -CEEEECC------------------------------CEEEECCCC-----SE--EEEEEEEEC
T ss_pred CCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHhccCCCEEEEccCCC-----CE--EEEEEEEEC
Confidence 47999999999 999999999988876544 2468999999961 44 777777764
No 35
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=98.39 E-value=7.9e-07 Score=90.59 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=39.6
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEE
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRF 177 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRv 177 (396)
-.-.+|+||..++.|+|+.++.+.+++...+. ..++|||+||+ |+.+.+-+
T Consensus 157 ~g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~------G~E~sv~~ 218 (442)
T 3lp8_A 157 HKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE------GKEISFFT 218 (442)
T ss_dssp SCSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC------SEEEEEEE
T ss_pred cCCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec------CcEEEEEE
Confidence 34579999999999999999999888755331 25799999997 77554443
No 36
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=98.38 E-value=1e-06 Score=89.46 Aligned_cols=53 Identities=17% Similarity=0.406 Sum_probs=40.9
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEEEEEe
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFYVLIT 182 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVt 182 (396)
.-.||+||..++.|+|+.++.+.+++...+. ...+|||+||+ |. ++.+.++..
T Consensus 142 g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~------G~--E~sv~~~~d 205 (431)
T 3mjf_A 142 GAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD------GE--EASFIVMVD 205 (431)
T ss_dssp CSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC------SE--EEEEEEEEE
T ss_pred CCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC------Cc--EEEEEEEEc
Confidence 3469999999999999999999888765431 25899999997 76 555555543
No 37
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.37 E-value=2.6e-06 Score=84.78 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=41.3
Q ss_pred cCeEEEeCCCCC-CCCceEEEcchhhhhhhc---ccCcceeeccccCCccCCCcEEEEEEEEEEe
Q psy2625 122 TPIYILKPCDGC-QGKGIKLAMKIDDITSTM---EFDSMICQQYITNPLLWNGYKFDIRFYVLIT 182 (396)
Q Consensus 122 ~~~WIvKP~~gs-~GrGI~lv~~~~~i~~~~---~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVt 182 (396)
.-.+|+||..++ .|+|+.++++.+++...+ ...++|||+||+ | ..++.+.++..
T Consensus 145 g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~i~------g-~~E~sv~~~~~ 202 (377)
T 3orq_A 145 GYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSECVAEKYLN------I-KKEVSLTVTRG 202 (377)
T ss_dssp CSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHTTSCEEEEECCC------E-EEEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCcEEEEccCC------C-CEEEEEEEEEe
Confidence 346999999986 899999999988876543 247899999996 3 23666666643
No 38
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=98.36 E-value=4.8e-07 Score=86.11 Aligned_cols=51 Identities=25% Similarity=0.258 Sum_probs=41.0
Q ss_pred eEEEeCCCCCCCCceEEEc-chhhhhhhc------ccCcceeeccccCCccCCC-cEEEEEEEEE
Q psy2625 124 IYILKPCDGCQGKGIKLAM-KIDDITSTM------EFDSMICQQYITNPLLWNG-YKFDIRFYVL 180 (396)
Q Consensus 124 ~WIvKP~~gs~GrGI~lv~-~~~~i~~~~------~~~~~IVQkYI~~PlLi~G-rKFDlRvyVL 180 (396)
.+|+||..|+.|+|+.+++ +.+++...+ ...++++|+||+ | ..+|+|++++
T Consensus 156 p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~------~~~~~~~~v~~~ 214 (316)
T 1gsa_A 156 DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLP------AIKDGDKRVLVV 214 (316)
T ss_dssp SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCG------GGGGCEEEEEEE
T ss_pred CEEEEECCCCCcccEEEecCChHHHHHHHHHHHhcCCceEEEecccC------CCCCCCEEEEEE
Confidence 7999999999999999998 766654432 136899999997 4 3689999876
No 39
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=98.34 E-value=4.7e-06 Score=82.40 Aligned_cols=54 Identities=15% Similarity=0.283 Sum_probs=38.5
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc---------cCcceeeccccCCccCCCcEEEEEEEEEEe
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME---------FDSMICQQYITNPLLWNGYKFDIRFYVLIT 182 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~---------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVt 182 (396)
.-.+|+||..++.|+|+.++++.+++...+. ..+++||+||+. |. ++++.++..
T Consensus 148 g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-----g~--E~sv~~~~~ 210 (391)
T 1kjq_A 148 GYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-----DF--EITLLTVSA 210 (391)
T ss_dssp CSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-----SE--EEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-----Ce--EEEEEEEEe
Confidence 3479999999999999999999888765431 467999999971 44 666666654
No 40
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=98.33 E-value=2.5e-06 Score=85.59 Aligned_cols=51 Identities=12% Similarity=0.257 Sum_probs=39.6
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFY 178 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvy 178 (396)
.-.+|+||..++.|+|+.++++.+++...+. ..+++||+||+ |+.+.+.++
T Consensus 137 ~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------g~E~sv~~~ 198 (424)
T 2yw2_A 137 GAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE------GEEASYIVM 198 (424)
T ss_dssp CSSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC------SEEEEEEEE
T ss_pred CCcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC------CcEEEEEEE
Confidence 3479999999999999999999888765431 25799999997 765554443
No 41
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=98.33 E-value=4.3e-06 Score=83.79 Aligned_cols=52 Identities=15% Similarity=0.332 Sum_probs=41.3
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-------cCcceeeccccCCccCCCcEEEEEEEEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-------FDSMICQQYITNPLLWNGYKFDIRFYVLI 181 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-------~~~~IVQkYI~~PlLi~GrKFDlRvyVLV 181 (396)
.-.+|+||..++.|+|+.++++.+++...+. ..+++||+||+ |. ++++.++.
T Consensus 136 ~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~------g~--E~sv~~~~ 194 (417)
T 2ip4_A 136 GVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE------GE--EATVLALT 194 (417)
T ss_dssp CSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC------SC--EEEEEEEE
T ss_pred CCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc------Cc--EEEEEEEE
Confidence 3479999999999999999999888765431 16799999997 66 66666665
No 42
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.30 E-value=6e-06 Score=82.93 Aligned_cols=52 Identities=13% Similarity=0.365 Sum_probs=39.7
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEEEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFYVLI 181 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvyVLV 181 (396)
.-.+|+||..++.|+|+.++++.+++...+. ..+++||+||+ |+. +.+.++.
T Consensus 141 g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~------G~E--~sv~~~~ 203 (412)
T 1vkz_A 141 SPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA------GNE--LSAMAVV 203 (412)
T ss_dssp CSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC------SEE--EEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc------CcE--EEEEEEE
Confidence 4579999999999999999999887765321 13799999997 764 4444444
No 43
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=98.30 E-value=6.1e-06 Score=86.40 Aligned_cols=153 Identities=12% Similarity=0.170 Sum_probs=84.6
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-------cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcc
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-------FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNE 194 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~ 194 (396)
.-.+|+||..|+.|+|+.++++.+++...+. ...++||+||+ | .-++.+-++....... +.++.
T Consensus 228 gyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~------g-~rei~V~vl~d~~G~v-v~l~~- 298 (540)
T 3glk_A 228 GFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ------H-ARHLEVQILADQYGNA-VSLFG- 298 (540)
T ss_dssp CSSEEEEETTCC----EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCS------S-EEEEEEEEEECTTSCE-EEEEE-
T ss_pred CCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC------C-CcEEEEEEEEcCCCCE-EEEec-
Confidence 3469999999999999999999988766542 46899999997 5 1266666665542222 22111
Q ss_pred eeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q psy2625 195 GIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGY 274 (396)
Q Consensus 195 g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~ 274 (396)
|-|+..-. .......+- ...-.+.+.++|.+++.+.+.+.
T Consensus 299 ---rd~s~qr~-------~~k~ie~~P-----------------------------a~~l~~~~~~~l~~~a~~~~~al- 338 (540)
T 3glk_A 299 ---RDCSIQRR-------HQKIVEEAP-----------------------------ATIAPLAIFEFMEQCAIRLAKTV- 338 (540)
T ss_dssp ---EEEEEC----------CCSEEEES-----------------------------CTTSCHHHHHHHHHHHHHHHHHH-
T ss_pred ---eeeeeeec-------ccceEEecC-----------------------------CCCCCHHHHHHHHHHHHHHHHHc-
Confidence 22211000 000000000 00001345556666655544432
Q ss_pred chhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcchHHHH-HHHHHHHHHhc
Q psy2625 275 KPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIK-TNLTRDLFSIL 343 (396)
Q Consensus 275 ~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~d~~vk-~~li~D~l~lv 343 (396)
++....++||++|.++++|+||||..|+-. .++...+. .++++-.++++
T Consensus 339 ------------------G~~G~~~VEf~~d~dg~~~~lEiNpR~~~~--~~vte~~tGvdl~~~~lr~a 388 (540)
T 3glk_A 339 ------------------GYVSAGTVEYLYSQDGSFHFLELNPRLQVE--HPCTEMIADVNLPAAQLQIA 388 (540)
T ss_dssp ------------------TCCEEEEEEEEEETTSCEEEEEEECSCCTT--HHHHHHHHTCCHHHHHHHHH
T ss_pred ------------------CCccceEEEEEEcCCCCEEEEEEECCCCCc--chhhHhHhCCCHHHHHHHHH
Confidence 233467899999999999999999999743 33333221 24555555553
No 44
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=98.30 E-value=2.9e-06 Score=85.11 Aligned_cols=51 Identities=18% Similarity=0.427 Sum_probs=40.0
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFYVLI 181 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvyVLV 181 (396)
-.+|+||..++.|+|+.++++.+++...+. ..+++||+||+ |+ ++++.++.
T Consensus 138 ~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------g~--E~sv~~~~ 199 (422)
T 2xcl_A 138 APIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS------GE--EFSLMAFV 199 (422)
T ss_dssp SSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC------SE--EEEEEEEE
T ss_pred CCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc------Cc--EEEEEEEE
Confidence 479999999999999999999888765331 26799999997 76 55555554
No 45
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=98.29 E-value=6.7e-06 Score=86.89 Aligned_cols=153 Identities=12% Similarity=0.180 Sum_probs=89.0
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-------cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEEEcc
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-------FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYIYNE 194 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~y~~ 194 (396)
.-.+|+||..|+.|+|+.++++.+++...+. ..+++||+||+.| + ++.+-++....... ++++.
T Consensus 244 GyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~-----r--ei~V~vl~D~~G~v-v~l~~- 314 (587)
T 3jrx_A 244 GFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHA-----R--HLEVQILADQYGNA-VSLFG- 314 (587)
T ss_dssp CSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSC-----E--EEEEEEEECSSSCE-EEEEE-
T ss_pred CCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCC-----c--EEEEEEEEcCCCCE-EEEee-
Confidence 3468999999999999999999988766542 4689999999722 4 56666665542221 22211
Q ss_pred eeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcc
Q psy2625 195 GIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGY 274 (396)
Q Consensus 195 g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~sa~ 274 (396)
|-|+..-. .......+- ...-.+.+.++|.+++.+.+.++
T Consensus 315 ---rd~siqrr-------~qk~ie~aP-----------------------------a~~l~~~~~~~i~~~A~~~a~al- 354 (587)
T 3jrx_A 315 ---RDCSIQRR-------HQKIVEEAP-----------------------------ATIAPLAIFEFMEQCAIRLAKTV- 354 (587)
T ss_dssp ---EEEEEESS-------SCEEEEEES-----------------------------CCSSCHHHHHHHHHHHHHHHHHH-
T ss_pred ---eecccccc-------ccceeEecC-----------------------------CCCCCHHHHHHHHHHHHHHHHHc-
Confidence 22211000 000000000 00002345566666665544432
Q ss_pred chhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcchHHHH-HHHHHHHHHhc
Q psy2625 275 KPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIK-TNLTRDLFSIL 343 (396)
Q Consensus 275 ~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~d~~vk-~~li~D~l~lv 343 (396)
++....++||++|.++++|+||||..|+-. .++...+. .++++-.++++
T Consensus 355 ------------------Gy~G~~~VEfl~d~dG~~yflEINpRl~~e--~~vte~~tGvdlv~~~lria 404 (587)
T 3jrx_A 355 ------------------GYVSAGTVEYLYSQDGSFHFLELNPRLQVE--HPCTEMIADVNLPAAQLQIA 404 (587)
T ss_dssp ------------------TCCEEEEEEEEECSSSCEEEEEEESSCCTT--HHHHHHHHTCCHHHHHHHHH
T ss_pred ------------------CCcceeEEEEEEeCCCCEEEEEEeCCCCCc--cceeccccCCCHHHHHHHHH
Confidence 123467899999999999999999999743 33333221 24555555553
No 46
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=98.27 E-value=9.7e-06 Score=82.02 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=41.6
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEEEEEe
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFYVLIT 182 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVt 182 (396)
.-.+|+||..++.|+|+.++++.+++...+. ..+++||+||+ |- -++++-++..
T Consensus 153 g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~------g~-~e~~v~~~~~ 217 (449)
T 2w70_A 153 GYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLE------NP-RHVEIQVLAD 217 (449)
T ss_dssp CSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCS------SC-EEEEEEEEEC
T ss_pred CCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccC------CC-eEEEEEEEEc
Confidence 3479999999999999999999887765431 46899999997 41 2567666654
No 47
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=98.26 E-value=8.3e-06 Score=80.30 Aligned_cols=54 Identities=15% Similarity=0.232 Sum_probs=37.6
Q ss_pred cCeEEEeCCCCC-CCCceEEEcchhhhhhhcc---cCcceeeccccCCccCCCcEEEEEEEEEEe
Q psy2625 122 TPIYILKPCDGC-QGKGIKLAMKIDDITSTME---FDSMICQQYITNPLLWNGYKFDIRFYVLIT 182 (396)
Q Consensus 122 ~~~WIvKP~~gs-~GrGI~lv~~~~~i~~~~~---~~~~IVQkYI~~PlLi~GrKFDlRvyVLVt 182 (396)
.-.+|+||..++ .|+|+.++++.+++...+. ..+++||+||+. |+ ++.+.++..
T Consensus 131 g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~~-----g~--e~sv~~~~d 188 (369)
T 3aw8_A 131 GLPALLKTRRGGYDGKGQALVRTEEEALEALKALGGRGLILEGFVPF-----DR--EVSLLAVRG 188 (369)
T ss_dssp CSSEEEEECCC------EEEECSHHHHHHHHTTTCSSSEEEEECCCC-----SE--EEEEEEEEC
T ss_pred CCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhcCCCcEEEEEcCCC-----CE--EEEEEEEEC
Confidence 347999999999 9999999999988876543 468999999961 55 566666654
No 48
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=98.26 E-value=4.3e-06 Score=84.93 Aligned_cols=51 Identities=16% Similarity=0.414 Sum_probs=35.7
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFYVLI 181 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvyVLV 181 (396)
-.+|+||..++.|+|+.++++.+++...+. ..+++||+||+ |+ ++.+.++.
T Consensus 159 ~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------G~--E~sv~~~~ 220 (451)
T 2yrx_A 159 APIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE------GE--EFSFMAFV 220 (451)
T ss_dssp SSEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC------SE--EEEEEEEE
T ss_pred CcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc------Cc--EEEEEEEE
Confidence 479999999999999999999887765321 36899999997 76 45554444
No 49
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=98.25 E-value=1.4e-05 Score=83.55 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=41.9
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-------cCcceeeccccCCccCCCcEEEEEEEEEEec
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-------FDSMICQQYITNPLLWNGYKFDIRFYVLITS 183 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts 183 (396)
.-.+|+||..++.|+|+.++++.+++...+. ..+++||+||+. ++ ++.+-++...
T Consensus 234 g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g-----~~--e~sv~vl~d~ 295 (554)
T 1w96_A 234 GFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGR-----AR--HLEVQLLADQ 295 (554)
T ss_dssp CSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCS-----CE--EEEEEEEECT
T ss_pred CCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-----Cc--EEEEEEEEcC
Confidence 3479999999999999999999888765432 468999999972 34 5556555543
No 50
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=98.18 E-value=2e-05 Score=80.05 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=41.3
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEEEEEe
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFYVLIT 182 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVt 182 (396)
.-.+|+||..++.|+|+.++++.+++...+. ..+++||+||+ |- -++++-++..
T Consensus 157 g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~------g~-~e~~v~v~~~ 221 (461)
T 2dzd_A 157 GYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIE------NP-KHIEVQILGD 221 (461)
T ss_dssp CSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCC------SC-EEEEEEEEEC
T ss_pred CCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCC------CC-eEEEEEEEEc
Confidence 3479999999999999999999888765431 46799999997 41 2566666654
No 51
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.17 E-value=4.8e-06 Score=90.33 Aligned_cols=52 Identities=23% Similarity=0.490 Sum_probs=43.0
Q ss_pred CcCeEEEeCCCCCCCCceEEEc---chhhhhhhcc-----cCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAM---KIDDITSTME-----FDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~---~~~~i~~~~~-----~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
-...+|+||..|+.|+||.+++ +.+++...+. ...++||+||+ |+ |+|+.|+
T Consensus 519 ~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~~~~~~vlVEefI~------G~--E~~v~Vv 578 (750)
T 3ln6_A 519 QDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFTEDSAILVEEYIE------GT--EYRFFVL 578 (750)
T ss_dssp SSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHHHHCSEEEEEECCC------SE--EEEEEEE
T ss_pred cCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHHhhCCcEEEEeccC------CC--EEEEEEE
Confidence 4568999999999999999998 7777665432 56899999996 75 9999887
No 52
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=98.16 E-value=1.1e-05 Score=81.26 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=34.0
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc---------cCcceeeccccCCccCCCcEEEEEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME---------FDSMICQQYITNPLLWNGYKFDIRFYVLI 181 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~---------~~~~IVQkYI~~PlLi~GrKFDlRvyVLV 181 (396)
-.+|+||..++.|+|+.++++.+++...+. ..+++||+||+. |. ++++.++.
T Consensus 157 ~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-----g~--E~sv~~~~ 217 (433)
T 2dwc_A 157 YPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-----DV--EVTELAVR 217 (433)
T ss_dssp SSEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCCC-----SE--EEEECCEE
T ss_pred CCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-----Ce--eEEEEEEe
Confidence 479999999999999999999888765432 357999999972 44 56665554
No 53
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=98.16 E-value=1.7e-05 Score=80.37 Aligned_cols=51 Identities=12% Similarity=0.290 Sum_probs=37.1
Q ss_pred Ce-EEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEEEEE
Q psy2625 123 PI-YILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFYVLI 181 (396)
Q Consensus 123 ~~-WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvyVLV 181 (396)
-. +|+||..++.|+|+.++++.+++...+. ..+++||+||+ |+ ++++.++.
T Consensus 164 ~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~------G~--E~sv~~~~ 226 (452)
T 2qk4_A 164 FPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD------GE--EVSCLCFT 226 (452)
T ss_dssp SCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC------SE--EEEEEEEE
T ss_pred CCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC------CC--eEEEEEEE
Confidence 35 9999999999999999999888765431 35799999997 66 66666654
No 54
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=98.11 E-value=1.1e-05 Score=78.46 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=23.6
Q ss_pred EeeeEEEecCCCCeEEEEeeCCCCCCCC
Q psy2625 297 LLGFDIILDSHCNPYLLEINKNASLKRP 324 (396)
Q Consensus 297 l~G~D~llD~~~kpWLLEVN~sPsl~~~ 324 (396)
+.|+|+|.+. ++|+++|||.-|-....
T Consensus 269 v~GVDlLrs~-~~~~V~EVNg~~fvk~~ 295 (330)
T 3t7a_A 269 VCGFDLLRAN-GQSYVCDVNGFSFVKNS 295 (330)
T ss_dssp EEEEEEEEET-TEEEEEEEEESCCCSSC
T ss_pred eEEEEEEEEC-CccEEEEeCCCccccCc
Confidence 7799999985 57999999999988866
No 55
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=98.11 E-value=1.6e-05 Score=81.84 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=36.1
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------------cCcceeeccccCC
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------------FDSMICQQYITNP 165 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------------~~~~IVQkYI~~P 165 (396)
-+-.+|+||..|+.|+|+.++++.+++...+. ...++||+||+-+
T Consensus 173 lg~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 173 IGTPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp SCSSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBC
T ss_pred cCCCEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCc
Confidence 34478999999999999999999887765431 3678999999833
No 56
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=98.10 E-value=1.1e-05 Score=77.81 Aligned_cols=50 Identities=12% Similarity=0.306 Sum_probs=22.6
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-cCcceeeccccCCccCCCcEEEEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-FDSMICQQYITNPLLWNGYKFDIRF 177 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-~~~~IVQkYI~~PlLi~GrKFDlRv 177 (396)
.-.+|+||..|+.|+|+.++++.+++...+. ..+++||+||+ |+.+.+.+
T Consensus 149 ~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~~~~lvee~i~------G~e~~v~~ 199 (331)
T 2pn1_A 149 QLPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQELLV------GQELGVDA 199 (331)
T ss_dssp CSCEEEEESBC-----------------------CEEEEECCC------SEEEEEEE
T ss_pred CCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHhCCCeEEEecCC------CcEEEEEE
Confidence 4579999999999999999999888876543 45899999997 76555554
No 57
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=98.01 E-value=6e-05 Score=74.78 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=33.6
Q ss_pred cCeEEEeCCCC-CCCCceEEEcc--hhhhhhhcccCcceeecccc
Q psy2625 122 TPIYILKPCDG-CQGKGIKLAMK--IDDITSTMEFDSMICQQYIT 163 (396)
Q Consensus 122 ~~~WIvKP~~g-s~GrGI~lv~~--~~~i~~~~~~~~~IVQkYI~ 163 (396)
.-..|+||..+ +.|+|+.++++ .+++...... ++|||+||+
T Consensus 114 G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~~~-~vivEe~I~ 157 (355)
T 3eth_A 114 GELAIVKRRTGGYDGRGQWRLRANETEQLPAECYG-ECIVEQGIN 157 (355)
T ss_dssp CSEEEEEESSSCCTTTTEEEEETTCGGGSCGGGTT-TEEEEECCC
T ss_pred CCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHhhC-CEEEEEccC
Confidence 35799999984 89999999999 8888663323 799999996
No 58
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=97.92 E-value=1.5e-05 Score=85.72 Aligned_cols=152 Identities=16% Similarity=0.204 Sum_probs=55.8
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYI 191 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy~ 191 (396)
-.+|+||..|+.|+|+.++.+.+++...+. ...++||+||+.| + ++.+-++.........+.
T Consensus 153 yPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~-----r--ei~V~v~~d~~G~vv~l~ 225 (681)
T 3n6r_A 153 YPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP-----R--HIEIQVLCDSHGNGIYLG 225 (681)
T ss_dssp --------------------------------------------------CCSC-----E--EEEEEEECCSSSCCEEEE
T ss_pred CcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCC-----c--EEEEEEEEeCCCCEEEEe
Confidence 468999999999999999999888765442 3579999999833 3 666666655432222221
Q ss_pred EcceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q psy2625 192 YNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVL 271 (396)
Q Consensus 192 y~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl~ 271 (396)
.|-|+..-. .....+.+-. ... .+.+.++|.+.+.+.+.
T Consensus 226 -----~rd~s~qr~-------~~k~~e~~Pa----------------------------~~l-~~~~~~~l~~~a~~~~~ 264 (681)
T 3n6r_A 226 -----ERECSIQRR-------NQKVVEEAPS----------------------------PFL-DEATRRAMGEQAVALAK 264 (681)
T ss_dssp -----EEECCCEET-------TEECEEEESC----------------------------SSC-CHHHHHHHHHHHHHHHH
T ss_pred -----eeecceecc-------CccEEEecCC----------------------------CCC-CHHHHHHHHHHHHHHHH
Confidence 121211000 0000000000 001 13455666666665444
Q ss_pred hccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCCCCCCcchHHHH-HHHHHHHHHhc
Q psy2625 272 TGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIK-TNLTRDLFSIL 343 (396)
Q Consensus 272 sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl~~~s~~d~~vk-~~li~D~l~lv 343 (396)
+.. ....+.+||++|.++++|+||||..|+-. .++...+. .++++-.++++
T Consensus 265 alg-------------------~~G~~~vEf~~d~dg~~~~lEiNpR~~~~--~~~te~~tGvdl~~~~l~~a 316 (681)
T 3n6r_A 265 AVG-------------------YASAGTVEFIVDGQKNFYFLEMNTRLQVE--HPVTELITGVDLVEQMIRVA 316 (681)
T ss_dssp TTT-------------------CCSEEEEEEEECTTSCCCCCEEECSCCTT--HHHHHHHHTCCHHHHHHHHH
T ss_pred HcC-------------------CCceEEEEEEEeCCCCEEEEecccccCCC--cHHhHHHhCCCHHHHHHHHH
Confidence 321 12366899999999999999999998754 34333222 24566666654
No 59
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=97.87 E-value=1.3e-05 Score=85.93 Aligned_cols=133 Identities=15% Similarity=0.236 Sum_probs=74.2
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEEEEEeccCceEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIY 190 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~PL~vy 190 (396)
.-.+|+||..|+.|+|+.++.+.+++...+. ...++||+||+.| + ++.+-++...... .++
T Consensus 178 gyPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~-----r--eiev~v~~d~~G~-vv~ 249 (675)
T 3u9t_A 178 GYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP-----R--HVEIQVFADRHGH-CLY 249 (675)
T ss_dssp CSSBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC-----B--CEEEEEEECSSSC-EEE
T ss_pred CCcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC-----c--EEEEEEEEcCCCC-EEE
Confidence 3468999999999999999999988876542 4579999999843 4 4455455443222 222
Q ss_pred EEcceeEeecccCCCCCCCCCCCCcceeeecccccCCCCccccchhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q psy2625 191 IYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTV 270 (396)
Q Consensus 191 ~y~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~sinK~~~~~~~~~~k~sl~~l~~~L~~~~g~d~~~l~~~I~~iI~~tl 270 (396)
++ .|-|+.... .....+.+-. ... .+.+.++|.+++.+.+
T Consensus 250 l~----~rd~s~qr~-------~qk~ie~~Pa----------------------------~~l-~~~~~~~l~~~a~~~~ 289 (675)
T 3u9t_A 250 LN----ERDCSIQRR-------HQKVVEEAPA----------------------------PGL-GAELRRAMGEAAVRAA 289 (675)
T ss_dssp EE----EEECCCBSS-------SSBCEEEESC----------------------------SSC-CHHHHHHHHHHHHHHH
T ss_pred Ee----ccccceeec-------cceEEEECCC----------------------------CCC-CHHHHHHHHHHHHHHH
Confidence 21 122221111 0000000000 011 1345566666666554
Q ss_pred HhccchhhhhhhhhcccccccccceeEeeeEEEecCCCCeEEEEeeCCCCC
Q psy2625 271 LTGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASL 321 (396)
Q Consensus 271 ~sa~~~l~~~~~~~~~~~~~~~~~FEl~G~D~llD~~~kpWLLEVN~sPsl 321 (396)
.+.. ....+++||++|.++++|+||||..|+-
T Consensus 290 ~alg-------------------~~G~~~vEf~~~~dG~~~~iEiNpR~~~ 321 (675)
T 3u9t_A 290 QAIG-------------------YVGAGTVEFLLDERGQFFFMEMNTRLQV 321 (675)
T ss_dssp HHTT-------------------CCSEEEEECCBCTTSCBCBCEEESSCCT
T ss_pred HHcC-------------------CccceEEEEEEcCCCCEEEEeccccccC
Confidence 4321 2247799999999999999999999975
No 60
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=97.84 E-value=9.5e-06 Score=88.07 Aligned_cols=52 Identities=25% Similarity=0.526 Sum_probs=42.3
Q ss_pred CcCeEEEeCCCCCCCCceEEE----cchhhhhhhc-----ccCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 121 NTPIYILKPCDGCQGKGIKLA----MKIDDITSTM-----EFDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv----~~~~~i~~~~-----~~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
-+-.+|+||..|+.|+||.++ .+.+++...+ ....++||+||+ |+ |+|+.|+
T Consensus 524 ~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~~~~vlVEefI~------G~--Ei~v~Vl 584 (757)
T 3ln7_A 524 ENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFREDKEVMVEDYLV------GT--EYRFFVL 584 (757)
T ss_dssp SSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHHCSSEEEEECCC------SE--EEEEEEE
T ss_pred cCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhcCCcEEEEEcCC------Cc--EEEEEEE
Confidence 345799999999999999999 6777766543 256799999995 74 9999886
No 61
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.78 E-value=0.00017 Score=81.09 Aligned_cols=50 Identities=6% Similarity=0.189 Sum_probs=30.6
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-------cCcceeeccccCCccCCCc-EEEEEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-------FDSMICQQYITNPLLWNGY-KFDIRFY 178 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-------~~~~IVQkYI~~PlLi~Gr-KFDlRvy 178 (396)
-.+|+||..++.|+|+.++.+.+++...+. ..+++||+||+ |. .+++.++
T Consensus 710 ~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~------g~~E~~V~~l 767 (1073)
T 1a9x_A 710 YPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLD------DAVEVDVDAI 767 (1073)
T ss_dssp SSEEEEC-------CEEEECSHHHHHHHHHHCC--------EEEBCCT------TCEEEEEEEE
T ss_pred CCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccC------CCcEEEEEEE
Confidence 469999999999999999999988776542 35799999997 65 5666553
No 62
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=97.73 E-value=0.00016 Score=81.87 Aligned_cols=56 Identities=20% Similarity=0.369 Sum_probs=33.7
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEEEEEec
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFYVLITS 183 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts 183 (396)
-.-.+|+||..|+.|+|+.++++.+++...+. ...++||+||+.| + ++.+-++...
T Consensus 154 iGyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~-----r--eieV~vl~d~ 220 (1150)
T 3hbl_A 154 AGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNP-----K--HIEVQVIGDE 220 (1150)
T ss_dssp TCSSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSC-----E--EEEEEEEECS
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCC-----c--EEEEEEEEeC
Confidence 34479999999999999999999888765432 4678999999833 3 4555555443
No 63
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=97.67 E-value=0.00012 Score=71.67 Aligned_cols=47 Identities=17% Similarity=0.361 Sum_probs=33.1
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcccCcceeeccccCCccCCCcEEEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTMEFDSMICQQYITNPLLWNGYKFDIR 176 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~~~~~IVQkYI~~PlLi~GrKFDlR 176 (396)
.-.+|+||..|+.|+|+.++++.+++... ...+++|+||+ |+.+.+-
T Consensus 125 g~P~vvKp~~g~g~~gv~~v~~~~~~~~~--~~~~~~ee~i~------g~e~sv~ 171 (363)
T 4ffl_A 125 KPPYFVKPPCESSSVGARIIYDDKDLEGL--EPDTLVEEYVE------GEVVSLE 171 (363)
T ss_dssp SSCEEEECSSCCTTTTCEEEC------CC--CTTCEEEECCC------SEEEEEE
T ss_pred CCCEEEEECCCCCCcCeEEeccHHHhhhh--ccchhhhhhcc------CcEEEEE
Confidence 34699999999999999999998887652 45789999996 7755443
No 64
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.65 E-value=0.00075 Score=75.96 Aligned_cols=55 Identities=15% Similarity=0.255 Sum_probs=41.9
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-------cCcceeeccccCCccCCCcEEEEEEEEEEec
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-------FDSMICQQYITNPLLWNGYKFDIRFYVLITS 183 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts 183 (396)
.-.+|+||..+..|+|+.++.+.+++...+. ..+++||+||+ |.+ ++.+-++...
T Consensus 163 g~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~------G~~-E~~v~v~~d~ 224 (1073)
T 1a9x_A 163 GFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLI------GWK-EYEMEVVRDK 224 (1073)
T ss_dssp CSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCT------TSE-EEEEEEEECT
T ss_pred CCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccC------CCe-EEEEEEEEeC
Confidence 3479999999999999999999988766542 35799999997 521 5666666543
No 65
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=97.64 E-value=0.00014 Score=82.37 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=10.7
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEEEEEec
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFYVLITS 183 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts 183 (396)
.-.+|+||..|+.|+|+.++++.+++...+. ..+++||+||+. |+ ++.+-++...
T Consensus 171 gyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~g-----g~--EisV~vl~D~ 236 (1165)
T 2qf7_A 171 GYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVER-----AR--HVESQILGDT 236 (1165)
T ss_dssp -------------------------------------------------CCCSS-----EE--EEEEEEEECT
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccC-----Cc--EEEEEEEEcC
Confidence 3469999999999999999999887765432 357899999972 23 6666666543
No 66
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=97.53 E-value=0.00025 Score=80.69 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=6.7
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCCccCCCcEEEEEEEEEEec
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNPLLWNGYKFDIRFYVLITS 183 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts 183 (396)
-.+|+||..++.|+|+.++.+.+++...+. ...++||+||+ | .-++.+-++...
T Consensus 181 yPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~------G-~rEisV~vl~Dg 245 (1236)
T 3va7_A 181 YPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVN------N-ARHVEIQMMGDG 245 (1236)
T ss_dssp ----------------------------------------------------------C-CEEEEEEEEEES
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccC------C-CeEEEEEEEecC
Confidence 468999999999999999999888765432 35789999998 4 125666666543
No 67
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=97.50 E-value=0.00037 Score=69.27 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=34.6
Q ss_pred CeEEEeCCCCCCCCceEEEcchhhhhhhcc----------c--CcceeeccccCCccCCCcEEE
Q psy2625 123 PIYILKPCDGCQGKGIKLAMKIDDITSTME----------F--DSMICQQYITNPLLWNGYKFD 174 (396)
Q Consensus 123 ~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~----------~--~~~IVQkYI~~PlLi~GrKFD 174 (396)
-..|+||..++.|+|++++++.+++...+. . .++|||+||+ |..+.
T Consensus 151 ~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~------G~e~s 208 (361)
T 2r7k_A 151 GTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV------GTNFC 208 (361)
T ss_dssp SCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC------SEEEE
T ss_pred CCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc------eEEee
Confidence 589999999999999999999988765431 1 4689999997 76664
No 68
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=97.03 E-value=0.0018 Score=63.33 Aligned_cols=46 Identities=11% Similarity=0.244 Sum_probs=24.8
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc--cCcceeeccccCCccCCCcEEE
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME--FDSMICQQYITNPLLWNGYKFD 174 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~--~~~~IVQkYI~~PlLi~GrKFD 174 (396)
+-..|+||..++.|+|++++++ +++..... ..++|||+||+ |..++
T Consensus 125 ~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~~~~~IiEEfI~------g~~~~ 172 (320)
T 2pbz_A 125 DELYFVRIEGPRGGSGHFIVEG-SELEERLSTLEEPYRVERFIP------GVYLY 172 (320)
T ss_dssp SCCEEEECC------------C-EECSCCCC----CCEEEECCC------SCEEE
T ss_pred CCcEEEEECCCCCCCCEEEECh-HHHHHHHHhcCCCEEEEeeec------eEecc
Confidence 3578999999999999999999 98866442 15799999997 66554
No 69
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=96.92 E-value=0.00044 Score=71.05 Aligned_cols=82 Identities=20% Similarity=0.307 Sum_probs=54.3
Q ss_pred hccCcCeEEEeCCCCCCCCceEEEcchh--h---hhhhcccCc--ceeeccccC---CccCCC----cEEEEEEEEEEec
Q psy2625 118 VEENTPIYILKPCDGCQGKGIKLAMKID--D---ITSTMEFDS--MICQQYITN---PLLWNG----YKFDIRFYVLITS 183 (396)
Q Consensus 118 ~~~~~~~WIvKP~~gs~GrGI~lv~~~~--~---i~~~~~~~~--~IVQkYI~~---PlLi~G----rKFDlRvyVLVts 183 (396)
+......||+||+.++.|.|+.+=...+ + +...+..++ ||+|++|.- |...+| +++|+|+|++...
T Consensus 358 vl~~l~~lViKp~~g~gg~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g~ 437 (474)
T 3n6x_A 358 VLDNLAELVVKEVQGSGGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGK 437 (474)
T ss_dssp HHHSGGGEEEEECCCE-----EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEESS
T ss_pred HHhchhheEEEecCCCCCCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcCC
Confidence 4556678999999999999998854332 2 222232344 999999972 233344 7899999998742
Q ss_pred cCceEEEEEcceeEeecccC
Q psy2625 184 VKHLRIYIYNEGIVRLATEK 203 (396)
Q Consensus 184 ~~PL~vy~y~~g~vRfat~~ 203 (396)
..++..+|++|+|..+
T Consensus 438 ----~~~v~pGgltRva~~~ 453 (474)
T 3n6x_A 438 ----TVSLVPGALCRVALRE 453 (474)
T ss_dssp ----SEEECSCCEEEEECST
T ss_pred ----ceEEecceEEEEecCC
Confidence 3688999999999763
No 70
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.24 E-value=0.0029 Score=50.41 Aligned_cols=44 Identities=23% Similarity=0.463 Sum_probs=35.5
Q ss_pred cCeEEEeCCCCCCCCceEEEcchhhhhhhcc-----------cCcceeeccccCC
Q psy2625 122 TPIYILKPCDGCQGKGIKLAMKIDDITSTME-----------FDSMICQQYITNP 165 (396)
Q Consensus 122 ~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~~-----------~~~~IVQkYI~~P 165 (396)
.-.+|+||..++.|+|+.++++.+++...+. ...++||+||+-+
T Consensus 45 ~~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g~ 99 (108)
T 2cqy_A 45 GYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNP 99 (108)
T ss_dssp CSSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSSS
T ss_pred CCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCCC
Confidence 3479999999999999999999887765431 3679999999743
No 71
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=89.34 E-value=0.27 Score=52.09 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=37.3
Q ss_pred eEEEeCCCCCCCCceEEEcchhhh----hhhcccCcceeeccccCCccCCCcEEEEEEEEE
Q psy2625 124 IYILKPCDGCQGKGIKLAMKIDDI----TSTMEFDSMICQQYITNPLLWNGYKFDIRFYVL 180 (396)
Q Consensus 124 ~WIvKP~~gs~GrGI~lv~~~~~i----~~~~~~~~~IVQkYI~~PlLi~GrKFDlRvyVL 180 (396)
-||+||..|..|.||.+++.-.+. ...+..+.+|.|+|++-| .++|.-.-+.+|++
T Consensus 529 ~yV~KPi~gReG~nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp-~~d~~~~~iG~f~v 588 (619)
T 2io8_A 529 GYAVKPIAGRCGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLP-KVDGKYIQVCTFTV 588 (619)
T ss_dssp CEEEEETTCCTTTTCEEECTTSCEEEECCCTTTTSCEEEEECCCCC-EETTEEEEEEEEEE
T ss_pred CEEEccCCCCCCCCEEEEeCCChhHhhccccccCCCeEEEEecCCC-CcCCcceEEEEEEE
Confidence 499999999999999999762221 112235789999999855 34443333444443
No 72
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=81.88 E-value=0.69 Score=49.23 Aligned_cols=54 Identities=20% Similarity=0.131 Sum_probs=21.4
Q ss_pred eEEEeCCCCCCCCceEEEcchhhh----hhhcccCcceeeccccCCccCCCcEEEEEEE
Q psy2625 124 IYILKPCDGCQGKGIKLAMKIDDI----TSTMEFDSMICQQYITNPLLWNGYKFDIRFY 178 (396)
Q Consensus 124 ~WIvKP~~gs~GrGI~lv~~~~~i----~~~~~~~~~IVQkYI~~PlLi~GrKFDlRvy 178 (396)
-||+||..|-.|.||.+.+.-.++ ...+..+.+|+|+|++-| .++|.-.-+-+|
T Consensus 544 ~yV~KPi~gReG~nV~I~~~~~~~~~~~~g~y~~~~~IyQe~~~lp-~f~~~~~~iG~~ 601 (652)
T 2vob_A 544 GYAKKPIVGRVGSNVIITSGDGVVHAESGGKYGKRNMIYQQLFELK-KQDDYYAIIGGW 601 (652)
T ss_dssp CEEEEECC---------------------------CEEEEECCC---CBTTBCCEEEEE
T ss_pred CeEeccCCCCCCCCEEEEcCCchhhhhcccccCCCCeEEEecccCC-ccCCcceEEEEE
Confidence 499999999999999998643321 112235789999999855 455543334443
No 73
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=73.13 E-value=1.9 Score=39.37 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=31.6
Q ss_pred CeEEEeCCCC-----CCCCceEE-Ecchhhhhhhcc--------------cCcceeecccc
Q psy2625 123 PIYILKPCDG-----CQGKGIKL-AMKIDDITSTME--------------FDSMICQQYIT 163 (396)
Q Consensus 123 ~~WIvKP~~g-----s~GrGI~l-v~~~~~i~~~~~--------------~~~~IVQkYI~ 163 (396)
-.+++||..+ +.|.|+.+ +++.+++...+. ...++||+||.
T Consensus 57 ~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~ 117 (238)
T 1wr2_A 57 YPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVAPMLK 117 (238)
T ss_dssp SSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEEECCC
T ss_pred CCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEEECCC
Confidence 3689999998 77788888 788887765431 15789999996
No 74
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=66.92 E-value=9.5 Score=38.07 Aligned_cols=93 Identities=19% Similarity=0.262 Sum_probs=64.0
Q ss_pred CcCeEEEeCCCCCCCCceEEEcchhhhhhhc--------------ccCcceeeccccCCccCCCcEEEEEEEEEEeccCc
Q psy2625 121 NTPIYILKPCDGCQGKGIKLAMKIDDITSTM--------------EFDSMICQQYITNPLLWNGYKFDIRFYVLITSVKH 186 (396)
Q Consensus 121 ~~~~WIvKP~~gs~GrGI~lv~~~~~i~~~~--------------~~~~~IVQkYI~~PlLi~GrKFDlRvyVLVts~~P 186 (396)
....-|||..+|.-|.||+.+++.+++..+- .-.+.|||+.|..--.+++..-.==+|.+=.
T Consensus 276 ~~PfV~VKADaGTYGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~---- 351 (432)
T 3k1t_A 276 QEPFVIVKADAGTYGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAEPVIYMMDH---- 351 (432)
T ss_dssp SCCCEEEEEECGGGCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEEEEEEEETT----
T ss_pred CCceEEEEcCCCCCCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCccccceEEEECC----
Confidence 4567899999999999999999999886431 1357899999974444565533333333311
Q ss_pred eEEEEEcceeEeecccCCCCCCCCCCCCcceeeecccc
Q psy2625 187 LRIYIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSI 224 (396)
Q Consensus 187 L~vy~y~~g~vRfat~~Y~~~~~~nl~d~~~HLTN~si 224 (396)
| .-+|+.|+.+..=. -.|++..-||+.-.+.
T Consensus 352 ---~-vvGgFyRvh~~rg~---dENLNapGm~F~plaf 382 (432)
T 3k1t_A 352 ---F-VVGGFYRVHTSRGA---DENLNAPGMHFEPLTF 382 (432)
T ss_dssp ---E-EEEEEEEEESCCST---TTTTSCCTTCEEEEEC
T ss_pred ---E-EEEEEEEecCCCCC---ccCCCCCCCEeeeccc
Confidence 1 12788898876543 4788888999875544
No 75
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=58.27 E-value=23 Score=36.14 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=36.0
Q ss_pred cceeEeeeEEEecCCCCeEEEEeeCC-CCCCCCCcchHHHHHHHHHHHHHhccC
Q psy2625 293 ACFQLLGFDIILDSHCNPYLLEINKN-ASLKRPTSIDKIIKTNLTRDLFSILNL 345 (396)
Q Consensus 293 ~~FEl~G~D~llD~~~kpWLLEVN~s-Psl~~~s~~d~~vk~~li~D~l~lv~~ 345 (396)
..-.+.|+|++.|.+|+.|+||-|.. ||=....-.+..+-..++.+.++-..+
T Consensus 140 ~~~~i~~~Dl~r~~dG~~~vlEdn~~~PSG~~y~lenR~~~~r~~pelf~~~~v 193 (474)
T 3n6x_A 140 VYAHIAGVDLVRTGENDFYVLEDNLRTPSGVSYMLENRKMMMRLFPELFRRYPV 193 (474)
T ss_dssp CSCSEEEEEEEECSSSCEEEEEEECSSCCCHHHHHHHHHHHHHHCHHHHHHSCB
T ss_pred eEEEEEEEEEEECCCCCEEEEEeCCCCCchHHHHHHHHHHHHHHhHHHHHhcCC
Confidence 34558999999999999999999994 664222223445555566666654443
No 76
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=34.32 E-value=1.8 Score=37.11 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=11.1
Q ss_pred CCCeEEEEeeCCCCCCCCC
Q psy2625 307 HCNPYLLEINKNASLKRPT 325 (396)
Q Consensus 307 ~~kpWLLEVN~sPsl~~~s 325 (396)
+++|||-||+.+|+-...+
T Consensus 105 dl~pwl~ei~~~p~~~~~~ 123 (144)
T 4e9m_A 105 DLRPWLLEIGFSPSLLTQS 123 (144)
T ss_dssp GGHHHHHHTTCC-------
T ss_pred chhHHHHHhCCCcHHHhcc
Confidence 5699999999999876543
No 77
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=32.58 E-value=50 Score=32.59 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=20.4
Q ss_pred eEEEeCC--CCCCCCc---------eEEEcchhhhhhh
Q psy2625 124 IYILKPC--DGCQGKG---------IKLAMKIDDITST 150 (396)
Q Consensus 124 ~WIvKP~--~gs~GrG---------I~lv~~~~~i~~~ 150 (396)
.+++||. .|.||+| +.++++.+++...
T Consensus 42 PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a 79 (395)
T 2fp4_B 42 EIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQL 79 (395)
T ss_dssp SEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHH
T ss_pred cEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHH
Confidence 4799994 5667765 9999988877653
No 78
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=27.75 E-value=36 Score=33.66 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=29.4
Q ss_pred CeEEEeCCCCCCCC----ceEEEcchhhhhhhcc-----------cCcceeecccc
Q psy2625 123 PIYILKPCDGCQGK----GIKLAMKIDDITSTME-----------FDSMICQQYIT 163 (396)
Q Consensus 123 ~~WIvKP~~gs~Gr----GI~lv~~~~~i~~~~~-----------~~~~IVQkYI~ 163 (396)
..|++||.....|+ |+.+..+.+++..... ...++||+|+.
T Consensus 40 ~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v~ 95 (397)
T 3ufx_B 40 KRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAVD 95 (397)
T ss_dssp SCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEECCC
T ss_pred CCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEEeec
Confidence 57999998854444 9999998887765431 24577888874
No 79
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=25.48 E-value=1.1e+02 Score=29.86 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=27.6
Q ss_pred EEEeCCCCCCCC----ceEEEcchhhhhhhc----c--------------cCcceeecccc
Q psy2625 125 YILKPCDGCQGK----GIKLAMKIDDITSTM----E--------------FDSMICQQYIT 163 (396)
Q Consensus 125 WIvKP~~gs~Gr----GI~lv~~~~~i~~~~----~--------------~~~~IVQkYI~ 163 (396)
+++||..+..|| |+.++.+.+++...+ . ...++||+|+.
T Consensus 43 vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~ 103 (388)
T 2nu8_B 43 WVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATD 103 (388)
T ss_dssp EEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECCC
T ss_pred EEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCCCCcccceEEEEEccc
Confidence 799998864333 999999888775432 1 13578888885
Done!