RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2625
(396 letters)
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB:
3tii_A* 3tin_A*
Length = 380
Score = 177 bits (450), Expect = 4e-52
Identities = 62/298 (20%), Positives = 126/298 (42%), Gaps = 27/298 (9%)
Query: 54 NATKANKTIRRNSPIEDNDNIKDKSSNQDSSNKTDVDIQRDDKHDGHKNKADKENERKPN 113
+ + + ++ I + + + + + + + + K
Sbjct: 83 LIKTSPELTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNK-- 140
Query: 114 VTTEVEENTPIYILKPCDGCQGKGIKLAMKIDDITSTME--FDSMICQQYITNPLLWN-- 169
+ E ++I K G +G+GI ++ ++ ++ + Q+Y+ +PLL
Sbjct: 141 --KKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPG 198
Query: 170 GYKFDIRFYVLITSVKHLRIYIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSE 229
KFDIR +VL+ + IY+Y EG++R ++E Y ++TN +M HLTN+ I K
Sbjct: 199 HRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPY---SDTNFQDMTSHLTNHCIQKEHS 253
Query: 230 NF---NEDLSKQSLERMNKFLRDVHNVDL-NALYARIHDIIVKTVLTGYKPILREYLDTF 285
E+ ++ E N++L N++L N++ +I +II + I +YL
Sbjct: 254 KNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYL--- 310
Query: 286 KNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIKTNLTRDLFSIL 343
FQL GFD ++D + +L+E+N + + + + S +
Sbjct: 311 -----PYHSFQLFGFDFMVDKNLKVWLIEVNGAPACA--QKLYAELCKGIVDLAISSV 361
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 2e-10
Identities = 63/427 (14%), Positives = 117/427 (27%), Gaps = 136/427 (31%)
Query: 32 RDNVKNMVME-LNRLNHTNTTNDNATKANKTIRRNSPIEDNDN-----IKDKSSNQ---- 81
N V+E L +L + N + +++ + I +K K
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 82 --DSSNKTDV---DIQ-------RD----DKHDGHKNKADKENERKPNVTT-EVEE---- 120
+ N ++ R D + +T EV+
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 121 --NTPIYILKPCDGCQGKGIKLAMKIDDITSTMEFDSMICQQYITNPLLWNGYKFDIRFY 178
+ L P + + S+I + W+ +K +
Sbjct: 310 YLDCRPQDL-PREVL--TTNPRRL------------SIIAESIRDGLATWDNWK-HVNCD 353
Query: 179 VLIT----SVKHLRIYIYNEGIVRLATEKYES----PNETNI-DNMYMHLTNYSINKNSE 229
L T S+ L R + ++ P +I + + I +
Sbjct: 354 KLTTIIESSLNVL-----EPAEYR---KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 230 NFNEDLSKQSL--ERMNKFLRDVHNVDLNAL-----YARIHDIIVK--TVLTGYKP--IL 278
L K SL ++ + + ++ L +H IV + + ++
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 279 REYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIKTNLTRD 338
YLD Y Y +G H LK +I+ + L R
Sbjct: 466 PPYLD---QYFY-----SHIGH------H-------------LK---NIEHPERMTLFRM 495
Query: 339 LFSILNLN--ESRLR---------GDILRDNLNYNTYKKHIEYEINNRGDFNMIYPCTSQ 387
+F L+ E ++R G IL YK +I C +
Sbjct: 496 VF--LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI---------------CDND 538
Query: 388 EQYERYI 394
+YER +
Sbjct: 539 PKYERLV 545
Score = 45.2 bits (106), Expect = 3e-05
Identities = 50/391 (12%), Positives = 120/391 (30%), Gaps = 88/391 (22%)
Query: 32 RDNVKNMVMELNRLNHTNTTNDNATKANKTIRRNSPIEDNDNIKDKSSNQDSSN------ 85
+M+ + NDN A + R P ++ +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL---KLRQALLELRPAKNVLIDG 157
Query: 86 -----KT--DVDIQRDDKHDGHKNKA----DKENERKPNVTTEVEENTPIYILKPCDGCQ 134
KT +D+ K + + +N P E+ + +Y + P +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDP-NWTS 215
Query: 135 G--KGIKLAMKIDDITSTMEFDSMICQQYITNPLL-----WNGY---KFDIRFYVLITSV 184
+ ++I I + E ++ + N LL N F++ +L+T+
Sbjct: 216 RSDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT- 272
Query: 185 KHLRIYIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMN 244
R + + + T+ S++ +S D + +
Sbjct: 273 ---R----FKQVTDFLSAATT--------------THISLDHHSMTLTPD---EVKSLLL 308
Query: 245 KFLRDVHNVDLNALYARIHDIIVKTVLTGYKPILREYLDTFKNYVY---------REACF 295
K+L + L + L+ +R+ L T+ N+ + E+
Sbjct: 309 KYL----DCRPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 296 QLLGFDIILDSHCNPYL-LEI-NKNASLKRPTSIDKIIKTNL-TRDLFSILNLNESRLRG 352
+L + L + +A + PT + +I ++ D+ + +N+
Sbjct: 364 NVLEPAEYRKM----FDRLSVFPPSAHI--PTILLSLIWFDVIKSDVMVV--VNKLHKYS 415
Query: 353 DILRDNLNYNTYKKH---IEYEINNRGDFNM 380
+ + +T +E ++ ++ +
Sbjct: 416 LVEKQP-KESTISIPSIYLELKVKLENEYAL 445
Score = 33.3 bits (75), Expect = 0.18
Identities = 27/192 (14%), Positives = 60/192 (31%), Gaps = 46/192 (23%)
Query: 144 IDDITSTMEFDSMICQQYITNPLLWNGYKFDIRFYVLITSVKHLRIYI--YNEGIVRLAT 201
+ + + + S++ +Q + + +++ + H I + YN
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYN------IP 456
Query: 202 EKYESPNET--NIDN------MYMHLTNYSINKNSENFNE---DLS----K--------- 237
+ ++S + +D + HL N + F D K
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGH-HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 238 ---------QSLERMNKFLRDVHNVD---LNALYARIHDIIVKTVLTGYKPILREYLDTF 285
Q L+ ++ D +NA+ + I + + Y +LR L
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 286 KNYVYREACFQL 297
++ EA Q+
Sbjct: 576 DEAIFEEAHKQV 587
Score = 32.5 bits (73), Expect = 0.30
Identities = 36/198 (18%), Positives = 58/198 (29%), Gaps = 66/198 (33%)
Query: 235 LSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKPILREYLDT---------- 284
LSKQ E + KF+ +V ++ L + I T + R Y++
Sbjct: 72 LSKQE-EMVQKFVEEVLRINYKFLMSPIK-----TEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 285 FKNY-VYREACFQLLGFDIILDSHCNPYLLEINKNASLKRPTSIDKII--------KTNL 335
F Y V R + L + A L ++ KT +
Sbjct: 126 FAKYNVSRLQPYLKL------------------RQA-LLELRPAKNVLIDGVLGSGKTWV 166
Query: 336 T----RDL-------FSI--LNLNESRLRGDILR--DNLNYNTYKKHIEYEINNRGD--F 378
F I LNL +L L Y I+ +R D
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-----QIDPNWTSRSDHSS 221
Query: 379 NMIYPCTSQEQYERYIIE 396
N+ S + R +++
Sbjct: 222 NIKLRIHSIQAELRRLLK 239
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 1e-04
Identities = 37/233 (15%), Positives = 71/233 (30%), Gaps = 79/233 (33%)
Query: 163 TNPL-LWNGYKFDIRFYVLITSVKH-----LR---IYIYNEGIVRLATEKYESPNE--TN 211
T PL L +G + +L+ + L+ I E TE + + +E T
Sbjct: 6 TRPLTLSHG---SLEHVLLVPTASFFIASQLQEQFNKILPE-----PTEGFAADDEPTTP 57
Query: 212 ID--NMYMHLTNYSINKNSENFNEDLSKQSL---ERMNKFLR--DVHNVDLNALYARIHD 264
+ ++ + + + + + L E +L D+H AL A++
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN--CYLEGNDIH-----ALAAKL-L 109
Query: 265 IIVKTVLTGYKPILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYLLEINKNASLKRP 324
T L K +++ Y+ A + K
Sbjct: 110 QENDTTLVKTKELIKNYI---------TARIMA------------------KRPFDKKSN 142
Query: 325 TSIDKIIKTNLTRDLFSILN--------LNESRLRGDILRDNLNYNTYKKHIE 369
+++ + + + L +I E LRD L Y TY +
Sbjct: 143 SALFRAVGEGNAQ-LVAIFGGQGNTDDYFEE-------LRD-L-YQTYHVLVG 185
Score = 35.0 bits (80), Expect = 0.050
Identities = 48/294 (16%), Positives = 88/294 (29%), Gaps = 102/294 (34%)
Query: 114 VTTEVEENTP---IYILKPCDGCQGKGIKLAMKIDDITSTMEFDSMICQQYITNPLLWNG 170
VT ++ TP LK G +G+ A+ I + S F ++ IT L + G
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGH-SQGLVTAVAIAETDSWESFFV-SVRKAITV-LFFIG 307
Query: 171 YK-------FDIRFYVLITSVKHLRIYIYNEGI------VR-LATEKYESP-NETNIDNM 215
+ + +L S+++ NEG+ + L E+ + N+TN
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLEN------NEGVPSPMLSISNLTQEQVQDYVNKTN---- 357
Query: 216 YMHL-TNYSIN---KNS-ENFNEDLS--KQSLERMNKFLRDVHNVDLNALYARIHDIIVK 268
HL + N +N +S QSL +N LR A +
Sbjct: 358 -SHLPAGKQVEISLVNGAKNLV--VSGPPQSLYGLNLTLRKAK--------APSGLDQSR 406
Query: 269 TVLTGYKP-ILREYLDTFKNYVYREACFQLLGFDIILDSHCNPYL--------------- 312
+ K +L + F H L
Sbjct: 407 IPFSERKLKFSNRFLPVA-------SPF-----------HS-HLLVPASDLINKDLVKNN 447
Query: 313 LEINKNASLKRP-----TSID-KIIKTNLTRDLFSILNLNESRLRGDILRDNLN 360
+ N ++ P D +++ +++ + I+R +
Sbjct: 448 VSFNA-KDIQIPVYDTFDGSDLRVLSGSISERIVD-----------CIIRLPVK 489
Score = 31.6 bits (71), Expect = 0.64
Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 34/117 (29%)
Query: 278 LREYLDTFKNYVYREACFQL---LGFDIILDSHCNPYLLEINKNASLKRPTSIDKIIKTN 334
L + ++ V+ A GF SI I+ N
Sbjct: 1635 LYKTSKAAQD-VWNRADNHFKDTYGF-------------------------SILDIVINN 1668
Query: 335 LTRDLFSILNLNESRLRGDILRDNLNYNTYKKHIEYEINNRGDFNMIYPCTSQEQYE 391
L ++ +G +R+N + ++ ++ ++ F I ++ +
Sbjct: 1669 PVN-----LTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II,
nysgrc., structural genomics, protein structure
initiative; 1.87A {Archaeoglobus fulgidus}
Length = 305
Score = 37.0 bits (85), Expect = 0.008
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 112 PNVTTEVEENTPIYILKPCDGCQGKGIKLAMKIDDITSTMEFDSMICQQYITNPLLWNGY 171
T + +I+KP C G+GI + ++ D I Q++I L
Sbjct: 123 QVPQTSLRPLDCKFIIKPRTACAGEGIGFSDEVP--------DGHIAQEFIEGINLSVSL 174
Query: 172 KFDIRFYVLITSVKHLRIYIYNEGIVR 198
L + + + + Y +V
Sbjct: 175 AVGEDVKCLSVNEQIINNFRYAGAVVP 201
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 31.4 bits (72), Expect = 0.47
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 292 EACFQLLG------FDIILDSHCNPYLLEIN 316
F +LG D +LD+ N Y LE+N
Sbjct: 251 RRAFDVLGCTDWGRADFMLDAAGNAYFLEVN 281
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell
WALL, peptidoglycan synthesis, vancomycin, ADP binding;
HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2
d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 31.3 bits (72), Expect = 0.49
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 292 EACFQLLG------FDIILDSHCNPYLLEIN 316
+ LG D++LDS YLLE N
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEAN 272
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 31.0 bits (70), Expect = 0.67
Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 125 YILKPCDGCQGKGIKLAMKIDDITSTMEFDS-MICQQYITNPLLWNGYKFDIRFYVLITS 183
+KP +G ++ ++++ ++ +I Q+ + G + + YV + S
Sbjct: 152 VFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQELL------VGQELGVDAYVDLIS 205
Query: 184 VKHLRIYIYNEGIVR 198
K I+I + +R
Sbjct: 206 GKVTSIFIKEKLTMR 220
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus
norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A
1aux_A*
Length = 309
Score = 30.1 bits (67), Expect = 1.1
Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 107 ENERKPNVTTEVEENTPIYILKPCDGCQGKGIKLAMKIDDITSTMEFDSMICQQYITNPL 166
E PN + T ++K G G D ++ P
Sbjct: 137 EQTYYPNHREMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPF 196
Query: 167 LWNGYKFDIRFYVL 180
+ K+DIR +
Sbjct: 197 I--DAKYDIRVQKI 208
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.2
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 9/24 (37%)
Query: 237 KQSLERMNKFLRDVHNVDLNALYA 260
KQ+L+++ L+ LYA
Sbjct: 19 KQALKKLQASLK---------LYA 33
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 30.2 bits (67), Expect = 1.3
Identities = 30/212 (14%), Positives = 64/212 (30%), Gaps = 39/212 (18%)
Query: 109 ERKPNVTTEVEENTPIY--ILKPCDGCQGKGIKLAMKIDDITSTMEFD-SMICQQYITNP 165
+ K V ++ I I+KP + + + + +CQ YI +
Sbjct: 120 KSKEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHYINHN 179
Query: 166 LLWNGYKFDIRFYVLITSVKHLRIYIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSIN 225
++ + + ++K R + ++D HL +
Sbjct: 180 ------NKIVKVFCIGNTLKWQT---------RTSLPNVHRCGIKSVDFNNQHLEDILSW 224
Query: 226 KNSENFNEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKTVLTGYKPILREYLDTF 285
+D+ + S R + + + A + D+ K
Sbjct: 225 PEGVIDKQDIIENSANRFGSKILEDPILLNLTSEAEMRDLAYK----------------- 267
Query: 286 KNYVYREACFQLLGFDIILDSHC-NPYLLEIN 316
V QL G D I ++ NP ++++N
Sbjct: 268 ---VRCALGVQLCGIDFIKENEQGNPLVVDVN 296
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 29.7 bits (67), Expect = 1.5
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 15/64 (23%)
Query: 126 ILKPCDGCQGKGIKLAMKID---------DITSTMEFDSMICQQYITNPLLWNGYKFDIR 176
+LKP G G+ + ++ + Q+Y+ P DIR
Sbjct: 127 VLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKP------GRDIR 180
Query: 177 FYVL 180
+V+
Sbjct: 181 VFVV 184
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia,
vesicle T structural genomics, structural genomics
consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo
sapiens}
Length = 344
Score = 29.8 bits (66), Expect = 1.5
Identities = 13/79 (16%), Positives = 19/79 (24%), Gaps = 12/79 (15%)
Query: 107 ENERKPNVTTEVEENTPIYILKPCDGCQGKGIKLAMKIDDITSTMEF-----DSMICQQY 161
E PN V ++K G G D + +
Sbjct: 154 EQTFFPNHKPMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYATTEAF 213
Query: 162 ITNPLLWNGYKFDIRFYVL 180
I K+DIR +
Sbjct: 214 ID-------SKYDIRIQKI 225
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 28.7 bits (63), Expect = 3.5
Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 12/61 (19%)
Query: 125 YILKPCDGCQGKGIKLAMKIDDITSTMEF-----DSMICQQYITNPLLWNGYKFDIRFYV 179
++K G G D + +I K+D+R
Sbjct: 267 VVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-------AKYDVRVQK 319
Query: 180 L 180
+
Sbjct: 320 I 320
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 26.5 bits (59), Expect = 7.0
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 183 SVKHLRIYIYNEGIVRLATEKYESPNE 209
V+H ++ G L K+ S NE
Sbjct: 52 DVQHFKVLRDGAGKYFLWVVKFNSLNE 78
>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN;
1.80A {Vibrio harveyi} SCOP: d.90.1.1 PDB: 2bkj_A*
Length = 240
Score = 27.3 bits (61), Expect = 9.2
Identities = 7/48 (14%), Positives = 18/48 (37%)
Query: 202 EKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRD 249
+Y+ N +I + + Y ++ S S++ ++ R
Sbjct: 179 NQYQELNLDDIQSYDQTMQAYYASRTSNQKLSTWSQEVTGKLAGESRP 226
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.385
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,751,215
Number of extensions: 337837
Number of successful extensions: 743
Number of sequences better than 10.0: 1
Number of HSP's gapped: 732
Number of HSP's successfully gapped: 30
Length of query: 396
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 300
Effective length of database: 4,021,377
Effective search space: 1206413100
Effective search space used: 1206413100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)