RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2625
         (396 letters)



>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
           ribonucleotide synthetase PurP {Pyrococcus furiosus
           [TaxId: 2261]}
          Length = 235

 Score = 28.7 bits (63), Expect = 0.96
 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 9/84 (10%)

Query: 105 DKENERK---------PNVTTEVEENTPIYILKPCDGCQGKGIKLAMKIDDITSTMEFDS 155
           D+  ERK         P V  + ++     I+KP     GKG  LA   +D     E   
Sbjct: 1   DRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFL 60

Query: 156 MICQQYITNPLLWNGYKFDIRFYV 179
            I ++     +    Y   +  Y 
Sbjct: 61  GIKRKEDLKNIQIQEYVLGVPVYP 84


>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 209

 Score = 27.6 bits (61), Expect = 2.4
 Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 3/62 (4%)

Query: 232 NEDLSKQSLERMNKFLRDVHNVDLNALYARIHDIIVKT---VLTGYKPILREYLDTFKNY 288
               S Q L   N+ L    +  +N   A   D        V+   K          +  
Sbjct: 94  AGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGN 153

Query: 289 VY 290
            Y
Sbjct: 154 RY 155


>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
           C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
          Length = 228

 Score = 27.3 bits (59), Expect = 3.2
 Identities = 17/167 (10%), Positives = 37/167 (22%), Gaps = 15/167 (8%)

Query: 186 HLRIYIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNK 245
                + N      A       +   +    ++           N    +S+     +  
Sbjct: 54  VGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPN 113

Query: 246 FLRDVHNVDLNALYARIHDIIVKTVLTGYKPILREYLDTFKNYVYREACFQLLGFDIILD 305
                   D N  +     +  +        + +E      +             D +LD
Sbjct: 114 QGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLD 173

Query: 306 SHCNPYLLEIN---------------KNASLKRPTSIDKIIKTNLTR 337
            +  PYL E N                 + +     +D +I      
Sbjct: 174 ENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 220


>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 97

 Score = 25.6 bits (56), Expect = 3.8
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 184 VKHLRIYIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSE 229
           V+H ++    +G   L TEK+ S N+     +  +    SI+K  +
Sbjct: 52  VQHFKVMRDTKGNYFLWTEKFPSLNK-----LVDYYRTTSISKQKQ 92


>d1f5va_ d.90.1.1 (A:) Oxygen-insensitive NAD(P)H nitroreductase
           {Escherichia coli, major form, NfsA [TaxId: 562]}
          Length = 240

 Score = 26.3 bits (57), Expect = 7.0
 Identities = 8/48 (16%), Positives = 16/48 (33%)

Query: 202 EKYESPNETNIDNMYMHLTNYSINKNSENFNEDLSKQSLERMNKFLRD 249
             Y+  ++  +      L  Y + + S N  +  S      + K  R 
Sbjct: 179 NSYQPLDKGALAQYDEQLAEYYLTRGSNNRRDTWSDHIRRTIIKESRP 226


>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 96

 Score = 24.9 bits (54), Expect = 7.0
 Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 5/46 (10%)

Query: 184 VKHLRIYIYNEGIVRLATEKYESPNETNIDNMYMHLTNYSINKNSE 229
           V+H ++     G   L   K+ S NE     +  +  + S+++N +
Sbjct: 50  VQHFKVLRDGAGKYFLWVVKFNSLNE-----LVDYHRSTSVSRNQQ 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,432,260
Number of extensions: 67048
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 22
Length of query: 396
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,213,086
Effective search space: 374843574
Effective search space used: 374843574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.9 bits)