RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2626
(355 letters)
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 339 bits (870), Expect = e-115
Identities = 106/371 (28%), Positives = 167/371 (45%), Gaps = 54/371 (14%)
Query: 10 CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAV-----QYVKNSHCGLEGRLPKVCCPQ 64
C+TP + G C+ CR + + L + + V Y++ + CG + CCP
Sbjct: 32 CTTPDGDQGQCMPFSSCRTIEERLTEAQKAGQKVPADYASYLQKALCGEFNGVRHFCCPS 91
Query: 65 HTLTNDQPTTTTRRPNNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAA 124
+ ++ + L +N +CG S+R+ G + PWMA
Sbjct: 92 ANIQHNSKVMS-------------LFKDENFDCGNF---LSQRVSNGYEVKLSSRPWMAL 135
Query: 125 IGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSS 184
+ + + G+ ++CGGA+I++RY+LTAAHCV + + Y + +G +
Sbjct: 136 LRY-----QQFGESRFLCGGAMISERYILTAAHCV---HGLQNDLYEIRLGEHRISTEED 187
Query: 185 G-------------VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYD 231
V++ IE+ +IHE+Y + ++DIAL +L P I+PICLP
Sbjct: 188 CRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPIT 247
Query: 232 TNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENIL 291
L+ + + T FV GWG+T G S L + + C Q Y + + L
Sbjct: 248 DELKEKAEQISTYFVTGWGTT-ENGSSSDVLLQANVPLQPRSACSQ---AYRRAVPLSQL 303
Query: 292 CAGVLSGGKDSCGGDSGGPLMYPL------DTKYYIIGVVSYG-KKCAEVGFPGVYTRVT 344
C G +DSC GDSGGPL P K G+VS G C ++ PG+YT V
Sbjct: 304 CVG-GGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVG 362
Query: 345 NYIQWIADNIS 355
Y+QWI D ++
Sbjct: 363 EYVQWITDTMA 373
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 310 bits (795), Expect = e-105
Identities = 88/283 (31%), Positives = 134/283 (47%), Gaps = 27/283 (9%)
Query: 88 KLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALI 147
+ P N+CG + +I+ G + ++PW A IG+ + ++ ++ CGG+LI
Sbjct: 5 RRPELLPNDCGYQ--VEADKILNGDDTVPEEFPWTAMIGY----KNSSNFEQFACGGSLI 58
Query: 148 TKRYVLTAAHCV-SPDTTGEYEPYIVHVGSIDLEDT------------SSGVSIEIERPI 194
RY++TAAHCV V +G + + + IE I
Sbjct: 59 NNRYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETI 118
Query: 195 IHEQYTSARK--LNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST 252
H Y K +DIAL RL ++ I+P+CLP E+ + V GWG T
Sbjct: 119 QHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQP---NEEVQVGQRLTVVGWGRT 175
Query: 253 VFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM 312
G S + + + VV +C + F G + + LCAG KDSCGGDSGGPL+
Sbjct: 176 E-TGQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGG-EKAKDSCGGDSGGPLL 233
Query: 313 YP-LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
+ ++++ G+VS+G C G+PG+YT+V Y WI NI
Sbjct: 234 AERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNI 276
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 314 bits (806), Expect = e-105
Identities = 94/362 (25%), Positives = 151/362 (41%), Gaps = 32/362 (8%)
Query: 10 CSTPRNEIGTCISIRQCRYLYDILN--NERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTL 67
+ CI +C + + + N + + VCC
Sbjct: 38 GTGADQGKKVCIVYHRCDGVTNTVTPEEVINTTGEGIFDIRENANECESYLDVCCGL--- 94
Query: 68 TNDQPTTTTRRPNNRNGAFTKLPSPDNNECGV-NAFNSSKRIVGGT-PSERGQWPWMAAI 125
+ T P +P + CG+ N +I G T +E G++PWM A+
Sbjct: 95 -PEGGVLPTPSPTPPV-----VPVLKPSFCGIRNERGLDFKITGQTNEAEYGEFPWMVAV 148
Query: 126 GFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDL---EDT 182
K +G+ + +CGG+LI VLT AHCV+ + + + G D ++
Sbjct: 149 -LKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQS-NLDAIKIRAGEWDTLTEKER 206
Query: 183 SSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERK 242
+I + IIH + +ND+AL L +D I ICLP +S++F+
Sbjct: 207 LPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLP----QQSQIFDST 262
Query: 243 TPFVAGWGSTVF--RGPLSPKLRHVQISVVDNPKCRQIFSN----YGATINENILCAGVL 296
F +GWG F R S L+ +Q+ VD KC+ N +++ +CAG
Sbjct: 263 ECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGE 322
Query: 297 SGGKDSCGGDSGGPLMYPL---DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 353
GKD+C GD G PL P ++Y +G+V++G C + PGVY V ++ WI
Sbjct: 323 -QGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQE 381
Query: 354 IS 355
+
Sbjct: 382 MQ 383
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 276 bits (708), Expect = 6e-93
Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 17/249 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGG + G+ PW A + E CGG ++++ Y+LTAAHC+
Sbjct: 1 IVGGQECKDGECPWQALL------INEEN--EGFCGGTILSEFYILTAAHCLYQAKR--- 49
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
+ V VG + E G E+E I H ++T DIA+ RL+ + P
Sbjct: 50 --FKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPA 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
CLP S L +KT V+G+G T +G S +L+ +++ VD C+ + I
Sbjct: 108 CLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKL---SSSFII 164
Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
+N+ CAG + +D+C GDSGGP + Y++ G+VS+G+ CA G G+YT+VT +
Sbjct: 165 TQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAF 224
Query: 347 IQWIADNIS 355
++WI ++
Sbjct: 225 LKWIDRSMK 233
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 273 bits (700), Expect = 1e-91
Identities = 79/249 (31%), Positives = 130/249 (52%), Gaps = 17/249 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGG+ ++ G WPW+ + + + +CG +L++ ++++AAHCV
Sbjct: 1 IVGGSDAKEGAWPWVVGL-------YYDDRL--LCGASLVSSDWLVSAAHCVYGRNLEPS 51
Query: 168 EPYIVHVGSIDLEDTSS--GVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
+ + +G + +S V I+ +I+ Y RK NDIA+ L +D IQP
Sbjct: 52 K-WTAILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQP 110
Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
I LP + + +AGWG+ V++G + L+ + ++ N +C+Q
Sbjct: 111 ISLPEEN---QVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQM--PEYN 165
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
I EN++CAG GG DSC GDSGGPLM + ++++ GV S+G +CA PGVY RV+
Sbjct: 166 ITENMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYECALPNRPGVYARVSR 225
Query: 346 YIQWIADNI 354
+ +WI +
Sbjct: 226 FTEWIQSFL 234
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 269 bits (689), Expect = 8e-90
Identities = 86/251 (34%), Positives = 121/251 (48%), Gaps = 14/251 (5%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGG +G+ PW + NG +CGG LI +V++AAHC D +
Sbjct: 1 IVGGKVCPKGECPWQVLL-------LVNGAQ--LCGGTLINTIWVVSAAHCF--DKIKNW 49
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
I +G DL + S + + II Y +DIAL RL + L+D + P+
Sbjct: 50 RNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPL 109
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA-- 284
CLP T L + V+GWG + RG + +L + + + C Q G
Sbjct: 110 CLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSP 169
Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
I E + CAG G KDSC GDSGGP +Y+ G+VS+G+ CA VG GVYTRV+
Sbjct: 170 NITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVS 229
Query: 345 NYIQWIADNIS 355
YI+W+ +
Sbjct: 230 QYIEWLQKLMR 240
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 266 bits (682), Expect = 6e-89
Identities = 81/250 (32%), Positives = 135/250 (54%), Gaps = 16/250 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGGT S G+WPW ++ + + + +CGG+LI ++VLTAAHC +
Sbjct: 1 IVGGTESSWGEWPWQVSL----QVKLTAQRH--LCGGSLIGHQWVLTAAHCFDGLPLQDV 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
+ ++ G ++L D + +I+ IIH+ Y + +DIAL +L+ ++ +PI
Sbjct: 55 --WRIYSGILELSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPI 112
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
LP + + T +V GWG + +G + L+ V I +V N +C++ +
Sbjct: 113 SLPS----KGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRY--QDYK 166
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
I + ++CAG GGKD+C GDSGGPL+ + + ++G+ S+G+ CA PGVYT+V
Sbjct: 167 ITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAE 226
Query: 346 YIQWIADNIS 355
Y+ WI +
Sbjct: 227 YMDWILEKTQ 236
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 265 bits (681), Expect = 7e-89
Identities = 74/250 (29%), Positives = 129/250 (51%), Gaps = 21/250 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
+VGG ++ GQ+PW + CGG+++ +++++TAAHCV
Sbjct: 1 VVGGEDAKPGQFPWQVVL-------NGKVDA--FCGGSIVNEKWIVTAAHCVETGVK--- 48
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL--NDIALFRLREDAPLSDLIQ 224
V G ++E+T + R I H + +A +DIAL L E L+ +
Sbjct: 49 --ITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVT 106
Query: 225 PICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
PIC+ D + + + +V+GWG +G + L+++++ +VD C + +
Sbjct: 107 PICIA-DKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLR---STKF 162
Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
TI N+ CAG GG+DSC GDSGGP + ++ ++ G++S+G++CA G G+YT+V+
Sbjct: 163 TITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVS 222
Query: 345 NYIQWIADNI 354
Y+ WI +
Sbjct: 223 RYVNWIKEKT 232
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 265 bits (680), Expect = 1e-88
Identities = 82/250 (32%), Positives = 127/250 (50%), Gaps = 16/250 (6%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGGT S RG+WPW + + +CGG++I +++LTAAHC + +
Sbjct: 1 IVGGTASVRGEWPWQVTL------HTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKI 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
V+ G ++ + ++ IIH+QY A DIAL +L +D +PI
Sbjct: 55 --LRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPI 112
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
LP + E T +V GWG R + L+ +I +V N +C++ + G
Sbjct: 113 SLPS----KGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY--RGHK 166
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
I ++CAG GGKD+C GDSGGPL + ++++G+ S+G+ CA+ PGVYT V
Sbjct: 167 ITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVE 226
Query: 346 YIQWIADNIS 355
Y+ WI +
Sbjct: 227 YVDWILEKTQ 236
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 264 bits (676), Expect = 2e-87
Identities = 83/288 (28%), Positives = 121/288 (42%), Gaps = 27/288 (9%)
Query: 85 AFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGG 144
F K D E + RIV G+ +E G PW + E +CG
Sbjct: 8 LFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVML-------FRKSPQELLCGA 60
Query: 145 ALITKRYVLTAAHCVSPDTTGEYEP---YIVHVGSIDLEDTSSG--VSIEIERPIIHEQY 199
+LI+ R+VLTAAHC+ + +V +G +E+ IH +Y
Sbjct: 61 SLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRY 120
Query: 200 TSARKL-NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST------ 252
L DIAL +L++ SD I P+CLP S L V GWG+
Sbjct: 121 NWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTA 180
Query: 253 VFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS---GGKDSCGGDSGG 309
L+ V + +V+ P C+ + I +N+ CAG D+C GDSGG
Sbjct: 181 NVGKGQPSVLQVVNLPIVERPVCKD---STRIRITDNMFCAGYKPDEGKRGDACEGDSGG 237
Query: 310 PLM--YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
P + P + ++Y +G+VS+G+ C G G YT V +WI I
Sbjct: 238 PFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 285
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 262 bits (672), Expect = 3e-87
Identities = 94/265 (35%), Positives = 130/265 (49%), Gaps = 23/265 (8%)
Query: 97 CGVNAF--NSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLT 154
CG F N S R+VGG + WPW ++ + + CGG LIT +VLT
Sbjct: 1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISL-----QYLRDNTWRHTCGGTLITPNHVLT 55
Query: 155 AAHCVSPDTTGEYEPYIVHVGSIDLEDTSSG--VSIEIERPIIHEQYTSARKLNDIALFR 212
AAHC+S T Y V +G +LE + + ++ +HE++ S NDIAL +
Sbjct: 56 AAHCISNTLT-----YRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIK 110
Query: 213 LREDAPLSDLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVD 271
L E L D IQ CLP + L + P FV GWG GP++ +L+ VVD
Sbjct: 111 LAETVELGDTIQVACLPSE----GSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVD 166
Query: 272 NPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVS--YGK 329
C Q +G T+ E ++CAG G +C GDSGGPL D ++ + G+VS G
Sbjct: 167 YATCSQRDW-WGTTVKETMVCAG-GDGVISACNGDSGGPLNCQADGQWDVRGIVSFGSGL 224
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNI 354
C P V+TRV+ YI WI +
Sbjct: 225 SCNTFKKPTVFTRVSAYIDWINQKL 249
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 263 bits (673), Expect = 5e-87
Identities = 87/274 (31%), Positives = 135/274 (49%), Gaps = 20/274 (7%)
Query: 90 PSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITK 149
P +CG +I+GG + PW AAI RR G ++CGG+L++
Sbjct: 6 PEELKFQCGQKTLRPRFKIIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLMSP 61
Query: 150 RYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTS--ARKLN 206
+V++A HC E YIV++G L + G + E+E I+H+ Y++ N
Sbjct: 62 CWVISATHCFIDYPKKED--YIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHN 119
Query: 207 DIALFRLRE----DAPLSDLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPK 261
DIAL ++R A S IQ ICLP + T + G+G L P+
Sbjct: 120 DIALLKIRSKEGRCAQPSRTIQTICLPS----MYNDPQFGTSCEITGFGKENSTDYLYPE 175
Query: 262 -LRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYY 320
L+ + ++ + +C+Q YG+ + +LCA DSC GDSGGPL+ L +
Sbjct: 176 QLKMTVVKLISHRECQQPHY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMT 234
Query: 321 IIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
+ G+VS+G+ CA PGVYTRV++++ WI +
Sbjct: 235 LTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 268
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 260 bits (668), Expect = 7e-87
Identities = 79/247 (31%), Positives = 117/247 (47%), Gaps = 13/247 (5%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGGT + G++P+ + + G CG ++ + Y +TA HCV D
Sbjct: 1 IVGGTDATLGEFPYQLSF-----QETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENP 55
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
+ G +D+ I + + I+HE + NDI+L +L +D + PI
Sbjct: 56 SGLQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPI 115
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
LP V GWG+T G L+ V + +V + CR + I
Sbjct: 116 ALPEQ----GHTATGDV-IVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADY--GADEI 168
Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
++++CAGV GGKDSC GDSGGPL Y+ G+VS+G CA G+PGVYT V+ +
Sbjct: 169 LDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYH 228
Query: 347 IQWIADN 353
+ WI N
Sbjct: 229 VDWIKAN 235
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 260 bits (666), Expect = 2e-86
Identities = 82/253 (32%), Positives = 123/253 (48%), Gaps = 20/253 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
+VGGT ++ G+WPW ++ A G+ CG +LI+ ++++AAHC D Y
Sbjct: 1 VVGGTDADEGEWPWQVSL-------HALGQGHI-CGASLISPNWLVSAAHCYIDDRGFRY 52
Query: 168 EP---YIVHVGSIDLEDTSS--GVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDL 222
+ +G D S+ ++R I H + DIAL L + A S +
Sbjct: 53 SDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSM 112
Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNY 282
++PI LP + K +V GWG T + G + L+ +I V++ C +
Sbjct: 113 VRPISLPDAS---HVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENL---L 166
Query: 283 GATINENILCAGVLSGGKDSCGGDSGGPLMYP-LDTKYYIIGVVSYGKKCAEVGFPGVYT 341
I ++C G LSGG DSC GDSGGPL D + + GVVS+G CA+ PGVYT
Sbjct: 167 PQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYT 226
Query: 342 RVTNYIQWIADNI 354
R+ + WI +N
Sbjct: 227 RLPLFRDWIKENT 239
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 258 bits (662), Expect = 8e-86
Identities = 79/255 (30%), Positives = 126/255 (49%), Gaps = 23/255 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
++ G + RG PW + + + CG LI +VLTAAHC+
Sbjct: 1 LIDGKMTRRGDSPWQVVL------LDSKK--KLACGAVLIHPSWVLTAAHCMDESKK--- 49
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
+V +G DL + ++I+ +H Y+ + NDIAL L + A LS I PI
Sbjct: 50 --LLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPI 107
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPK-----LRHVQISVVDNPKCRQIFS 280
CLP EL + V GWG R + + L ++I VV + +C ++
Sbjct: 108 CLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEV-- 165
Query: 281 NYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVY 340
++EN+LCAG+L +D+C GDSGGP++ ++++G+VS+G+ C + GVY
Sbjct: 166 -MSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVY 224
Query: 341 TRVTNYIQWIADNIS 355
T+V+ Y+ WI +I
Sbjct: 225 TKVSRYLDWIHGHIR 239
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 257 bits (659), Expect = 1e-85
Identities = 81/249 (32%), Positives = 119/249 (47%), Gaps = 21/249 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGGT E G+WPW A++ + +G CG LI ++++AAHC +
Sbjct: 1 IVGGTEVEEGEWPWQASL-------QWDGSH--RCGATLINATWLVSAAHCFTTYKNPAR 51
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
+ G S + + R I+HE+Y DI+L L P ++ + +C
Sbjct: 52 --WTASFGV---TIKPSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVC 106
Query: 228 LPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
LP S F+ FV G+G+ G LR Q++++D C + + Y I
Sbjct: 107 LPD----ASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQA-YNDAI 161
Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYP-LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
+LCAG L G D+C GDSGGPL+ +Y+ G+VS+G +CA+ PGVYTRVT
Sbjct: 162 TPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTA 221
Query: 346 YIQWIADNI 354
WI
Sbjct: 222 LRDWITSKT 230
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 258 bits (660), Expect = 2e-85
Identities = 78/265 (29%), Positives = 115/265 (43%), Gaps = 27/265 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IV G+ +E G PW + E +CG +LI+ R+VLTAAHC+ +
Sbjct: 1 IVEGSDAEIGMSPWQVML-------FRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKN 53
Query: 168 EP---YIVHVGSIDLEDTSSG--VSIEIERPIIHEQYTSARKL-NDIALFRLREDAPLSD 221
+V +G +E+ IH +Y L DIAL +L++ SD
Sbjct: 54 FTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSD 113
Query: 222 LIQPICLPYDTNLRSELFERKTPFVAGWGST------VFRGPLSPKLRHVQISVVDNPKC 275
I P+CLP S L V GWG+ L+ V + +V+ P C
Sbjct: 114 YIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVC 173
Query: 276 RQIFSNYGATINENILCAGVL---SGGKDSCGGDSGGPLM--YPLDTKYYIIGVVSYGKK 330
+ + I +N+ CAG D+C GDSGGP + P + ++Y +G+VS+G+
Sbjct: 174 KD---STRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG 230
Query: 331 CAEVGFPGVYTRVTNYIQWIADNIS 355
C G G YT V +WI I
Sbjct: 231 CDRDGKYGFYTHVFRLKKWIQKVID 255
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 257 bits (659), Expect = 3e-85
Identities = 71/261 (27%), Positives = 120/261 (45%), Gaps = 28/261 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I G P+++G PW+A + NG+P CGG+L+ +++TAAHC+ +
Sbjct: 1 IFNGRPAQKGTTPWIAML------SHLNGQP--FCGGSLLGSSWIVTAAHCLHQSLDPKD 52
Query: 168 EP-----------YIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLRE 215
+ + +G + + ++ +H QY ND+AL L E
Sbjct: 53 PTLRDSDLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLE 112
Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKC 275
L+ + PICLP E V+GWG F L ++I +VD+ C
Sbjct: 113 SPVLNAFVMPICLP-----EGPQQEGAMVIVSGWGKQ-FLQRFPETLMEIEIPIVDHSTC 166
Query: 276 RQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLM--YPLDTKYYIIGVVSYGKKCAE 333
++ ++ + +++CAG GGKD+C GDSGGP++ ++Y++G VS+G C +
Sbjct: 167 QKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGK 226
Query: 334 VGFPGVYTRVTNYIQWIADNI 354
GVY+ + + WI
Sbjct: 227 KDRYGVYSYIHHNKDWIQRVT 247
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 263 bits (673), Expect = 3e-85
Identities = 90/371 (24%), Positives = 134/371 (36%), Gaps = 39/371 (10%)
Query: 10 CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCG------LEGRLPKVCCP 63
C P C + + + G + +
Sbjct: 64 CRNP----DGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATAT 119
Query: 64 QHTLTNDQPTTTTRRPNN--RNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPW 121
T P T + F K D E + RIV G+ +E G PW
Sbjct: 120 SEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPW 179
Query: 122 MAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEP---YIVHVGSID 178
+ E +CG +LI+ R+VLTAAHC+ + +V +G
Sbjct: 180 QVML-------FRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHS 232
Query: 179 LEDTSSG--VSIEIERPIIHEQYTSARKL-NDIALFRLREDAPLSDLIQPICLPYDTNLR 235
+E+ IH +Y L DIAL +L++ SD I P+CLP
Sbjct: 233 RTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAA 292
Query: 236 SELFERKTPFVAGWGST------VFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINEN 289
S L V GWG+ L+ V + +V+ P C+ + I +N
Sbjct: 293 SLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKD---STRIRITDN 349
Query: 290 ILCAGVLS---GGKDSCGGDSGGPLM--YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVT 344
+ CAG D+C GDSGGP + P + ++Y +G+VS+G+ C G G YT V
Sbjct: 350 MFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVF 409
Query: 345 NYIQWIADNIS 355
+WI I
Sbjct: 410 RLKKWIQKVID 420
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 256 bits (657), Expect = 3e-85
Identities = 75/253 (29%), Positives = 111/253 (43%), Gaps = 20/253 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
++GGT + G++PW + +R +G CG +L++ L+A+HCV
Sbjct: 1 VIGGTNASPGEFPWQLSQ------QRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNI 54
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTS--ARKLNDIALFRLREDAPLSDLIQP 225
V G DTS + ++ +HE Y + A NDIA+ L L IQ
Sbjct: 55 R---VIAGLWQQSDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQA 111
Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA- 284
LP + + + T ++GWG T L L+ I V+ +C G
Sbjct: 112 AVLPANN---NNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGA 168
Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVS----YGKKCAEVGFPGVY 340
I +N +C +G +C GDSGGPL P D ++GV S G +P VY
Sbjct: 169 NIWDNHICVQDPAGNTGACNGDSGGPLNCP-DGGTRVVGVTSWVVSSGLGACLPDYPSVY 227
Query: 341 TRVTNYIQWIADN 353
TRV+ Y+ WI DN
Sbjct: 228 TRVSAYLGWIGDN 240
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 255 bits (654), Expect = 9e-85
Identities = 88/255 (34%), Positives = 120/255 (47%), Gaps = 22/255 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I GG ++ G +PW I GAL+ +VLTAAH V
Sbjct: 1 IYGGQKAKPGDFPWQVLI-----------LGGTTAAGALLYDNWVLTAAHAVYEQKHDAS 49
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL-NDIALFRLREDAPLSDLIQPI 226
+ +G++ E IHE YT NDIAL +L ++ I PI
Sbjct: 50 A-LDIRMGTLKRLSPH-YTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPI 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSN---YG 283
CLP S + +GWG T RG L+ L +V I +VD+ KC +
Sbjct: 108 CLP-RKEAESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPR 165
Query: 284 ATINENILCAGVLSGGKDSCGGDSGGPLM--YPLDTKYYIIGVVSYGKK-CAEVGFPGVY 340
++ N+LCAG+ SGGKDSC GDSGG L+ ++++ G+VS+G C E G GVY
Sbjct: 166 GSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVY 225
Query: 341 TRVTNYIQWIADNIS 355
T+V NYI WI + IS
Sbjct: 226 TKVINYIPWIENIIS 240
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 260 bits (666), Expect = 1e-84
Identities = 85/276 (30%), Positives = 132/276 (47%), Gaps = 28/276 (10%)
Query: 91 SPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKR 150
+ +CG RIVGG + G+WPW ++ R +G +CGG+L++
Sbjct: 102 AAICQDCGRRKLPVD-RIVGGRDTSLGRWPWQVSL-------RYDGAH--LCGGSLLSGD 151
Query: 151 YVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL----- 205
+VLTAAHC P+ + V G++ + G+ + ++ + H Y R
Sbjct: 152 WVLTAAHCF-PERNRVLSRWRVFAGAVAQ-ASPHGLQLGVQAVVYHGGYLPFRDPNSEEN 209
Query: 206 -NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLR 263
NDIAL L PL++ IQP+CLP + V GWG+T + G + L+
Sbjct: 210 SNDIALVHLSSPLPLTEYIQPVCLPA----AGQALVDGKICTVTGWGNTQYYGQQAGVLQ 265
Query: 264 HVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP----LDTKY 319
++ ++ N C YG I + CAG GG D+C GDSGGP + ++
Sbjct: 266 EARVPIISNDVCNGADF-YGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRW 324
Query: 320 YIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
+ G+VS+G CA PGVYT+V+++ +WI I
Sbjct: 325 RLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIK 360
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 267 bits (684), Expect = 1e-84
Identities = 88/298 (29%), Positives = 141/298 (47%), Gaps = 19/298 (6%)
Query: 62 CPQHTLTNDQPTTTTRRPNNRNGAFTKLPSPDNNECGVNAFNSSK---RIVGGTPSERGQ 118
C + ++ P + C ++ ++K RIVGGT S RG+
Sbjct: 339 CNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIKPRIVGGTASVRGE 398
Query: 119 WPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSID 178
WPW + + +CGG++I +++LTAAHC + + V+ G ++
Sbjct: 399 WPWQVTL------HTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKI--LRVYSGILN 450
Query: 179 L-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSE 237
E ++ IIH+QY A DIAL +L +D +PICLP + +
Sbjct: 451 QSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPS----KGD 506
Query: 238 LFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVL 296
T +V GWG R + L+ +I +V N +C++ + G I ++CAG
Sbjct: 507 RNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY--RGHKITHKMICAGYR 564
Query: 297 SGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
GGKD+C GDSGGPL + ++++G+ S+G+ CA+ PGVYT V Y+ WI +
Sbjct: 565 EGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 622
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 260 bits (666), Expect = 2e-84
Identities = 91/267 (34%), Positives = 127/267 (47%), Gaps = 22/267 (8%)
Query: 96 ECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTA 155
CG++A + +I GG ++ G +PW I GAL+ +VLTA
Sbjct: 150 VCGLSARTTGGQIYGGQKAKPGDFPWQVLI-----------LGGTTAAGALLYDNWVLTA 198
Query: 156 AHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL-NDIALFRLR 214
AH V + +G++ E IHE YT NDIAL +L
Sbjct: 199 AHAVYEQKHDASA-LDIRMGTLKRLS-PHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLN 256
Query: 215 EDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPK 274
++ I PICLP S + +GWG T RG L+ L +V I +VD+ K
Sbjct: 257 NKVVINSNITPICLP-RKEAESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQK 314
Query: 275 CRQIFSN---YGATINENILCAGVLSGGKDSCGGDSGGPLM--YPLDTKYYIIGVVSYGK 329
C + ++ N+LCAG+ SGGKDSC GDSGG L+ ++++ G+VS+G
Sbjct: 315 CTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGS 374
Query: 330 K-CAEVGFPGVYTRVTNYIQWIADNIS 355
C E G GVYT+V NYI WI + IS
Sbjct: 375 MNCGEAGQYGVYTKVINYIPWIENIIS 401
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 255 bits (654), Expect = 5e-84
Identities = 79/258 (30%), Positives = 121/258 (46%), Gaps = 19/258 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GG + G WPWM ++ +CGG+L+ +++LTAAHC
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYH---VCGGSLLNSQWLLTAAHCFRIKKKVTD 57
Query: 168 EPYIVHVGSIDLEDTSSG------VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD 221
+ + G+ ++E ++ +E+ IIHE+Y+++ + NDIAL ++
Sbjct: 58 --WRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGH 115
Query: 222 LIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPL-SPKLRHVQISVVDNPKCRQIF 279
I P CLP R+ +VAGWG SP L+ ++ ++D C
Sbjct: 116 FIGPGCLP---QFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTR 172
Query: 280 SNYGATINENILCAGVLSGGKDSCGGDSGGPLMY--PLDTKYYIIGVVSYGKKCAEVGFP 337
Y I +CAG G D+C GDSGGPLM + Y ++G+ S+G CA P
Sbjct: 173 W-YNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRP 231
Query: 338 GVYTRVTNYIQWIADNIS 355
GVYT +Y+ WIA I
Sbjct: 232 GVYTSTWSYLNWIASKIG 249
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 252 bits (646), Expect = 9e-84
Identities = 71/249 (28%), Positives = 110/249 (44%), Gaps = 28/249 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
+VGGT + +G++P+M + CGGAL + VLTAAHCV +G
Sbjct: 1 VVGGTRAAQGEFPFMVRLSMG-------------CGGALYAQDIVLTAAHCV--SGSGNN 45
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
G +DL+ SS V + + + +T D AL +L + QP
Sbjct: 46 TSITATGGVVDLQS-SSAVKVRSTKVLQAPGFTKETYGKDWALIKLA-----QPINQPTL 99
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
+ + + T VAGWG+ G L + V + CR S+ +
Sbjct: 100 KIAT----TTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRS--SSSFILVA 153
Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
++CAG + +D+C GDSGGP+ ++ +G+VS+G+ CA G GVYT V+ +
Sbjct: 154 NEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTF 213
Query: 347 IQWIADNIS 355
IA
Sbjct: 214 ASAIASAAR 222
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 252 bits (645), Expect = 2e-83
Identities = 72/257 (28%), Positives = 112/257 (43%), Gaps = 29/257 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GG ++ G +PW +G+ GGAL+ R++LTAAH + P
Sbjct: 1 IIGGQKAKMGNFPWQVFT-------NIHGR----GGGALLGDRWILTAAHTLYPKEHEAQ 49
Query: 168 EP--YIVHVGSIDLEDTSSGVSIEIERPIIHEQY---TSARKLNDIALFRLREDAPLSDL 222
V +G ++E+ + I R +H Y S DIAL L L
Sbjct: 50 SNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPN 109
Query: 223 IQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIF-- 279
+ PICLP ++ +V+G+G ++ LR V++ V + C
Sbjct: 110 LLPICLP----DNDTFYDLGLMGYVSGFGVM--EEKIAHDLRFVRLPVANPQACENWLRG 163
Query: 280 SNYGATINENILCAGVLSGGKDSCGGDSGGPLM--YPLDTKYYIIGVVSYGKKCAEVGFP 337
N ++N+ CAG S +D+C GDSGG P ++ G+VS+G C+
Sbjct: 164 KNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--Y 221
Query: 338 GVYTRVTNYIQWIADNI 354
G YT+V NY+ WI +
Sbjct: 222 GFYTKVLNYVDWIKKEM 238
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 256 bits (656), Expect = 5e-83
Identities = 87/361 (24%), Positives = 138/361 (38%), Gaps = 46/361 (12%)
Query: 15 NEIGTCISIRQCRYLYDILN-----NERNNPRAVQYVKNSHCG-----LEGRLPKVCCPQ 64
+ C I+ C ++ N + +C ++ R Q
Sbjct: 60 RAMPRC-KIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQ 118
Query: 65 HTLTNDQPTTTTRRPNNRNGAFTKLPSPDNNECG--VNAFNSSKRIVGGTPSERGQWPWM 122
T N + G P CG VN ++I+GG ++ G +PW
Sbjct: 119 GVYTCTAQGIWK---NEQKGEKIPRCLPV---CGKPVNPVEQRQQIIGGQKAKMGNFPWQ 172
Query: 123 AAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEP--YIVHVGSIDLE 180
+G+ GGAL+ R++LTAAH + P V +G ++E
Sbjct: 173 VFT-------NIHGR----GGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVE 221
Query: 181 DTSSGVSIEIERPIIHEQY---TSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSE 237
+ + I R +H Y S DIAL L L + PICLP + +
Sbjct: 222 ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLP---DNDTF 278
Query: 238 LFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIF--SNYGATINENILCAGV 295
+V+G+G ++ LR V++ V + C N ++N+ CAG
Sbjct: 279 YDLGLMGYVSGFGVM--EEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGH 336
Query: 296 LSGGKDSCGGDSGGPLM--YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADN 353
S +D+C GDSGG P ++ G+VS+G C+ G YT+V NY+ WI
Sbjct: 337 PSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKE 394
Query: 354 I 354
+
Sbjct: 395 M 395
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 250 bits (642), Expect = 8e-83
Identities = 85/265 (32%), Positives = 122/265 (46%), Gaps = 27/265 (10%)
Query: 96 ECGVNAFNSSK---RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYV 152
+CG K R+VGG + WPW ++ R G CGG LI+ +V
Sbjct: 3 DCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSL------RTRFGMH--FCGGTLISPEWV 54
Query: 153 LTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGV-SIEIERPIIHEQYTSARKLNDIALF 211
LTAAHC+ Y V +G+ + V IE+ R + DIAL
Sbjct: 55 LTAAHCLEKSPRPSS--YKVILGAHQEVNLEPHVQEIEVSRLFLEPTR------KDIALL 106
Query: 212 RLREDAPLSDLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVV 270
+L A ++D + P CLP + + +T F+ GWG T + L+ Q+ V+
Sbjct: 107 KLSSPAVITDKVIPACLPS----PNYVVADRTECFITGWGETQ-GTFGAGLLKEAQLPVI 161
Query: 271 DNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK 330
+N C + + LCAG L+GG DSC GD+GGPL+ KY + GV S+G
Sbjct: 162 ENKVCNRYEF-LNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLG 220
Query: 331 CAEVGFPGVYTRVTNYIQWIADNIS 355
CA PGVY RV+ ++ WI +
Sbjct: 221 CARPNKPGVYVRVSRFVTWIEGVMR 245
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 253 bits (649), Expect = 9e-83
Identities = 76/269 (28%), Positives = 117/269 (43%), Gaps = 29/269 (10%)
Query: 97 CG--VNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLT 154
CG VN +RI+GG ++ G +PW +G+ GGAL+ R++LT
Sbjct: 77 CGKPVNPVEQRQRIIGGQKAKMGNFPWQVFT-------NIHGR----GGGALLGDRWILT 125
Query: 155 AAHCVSPDTTGEYEP--YIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL---NDIA 209
AAH + P V +G ++E+ + I R +H Y DIA
Sbjct: 126 AAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIA 185
Query: 210 LFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISV 269
L L L + PICLP + + +V+G+G ++ LR V++ V
Sbjct: 186 LLELENSVTLGPNLLPICLP---DNDTFYDLGLMGYVSGFGVM--EEKIAHDLRFVRLPV 240
Query: 270 VDNPKCRQIF--SNYGATINENILCAGVLSGGKDSCGGDSGGPLM--YPLDTKYYIIGVV 325
+ C N ++N+ CAG S +D+C GDSGG P ++ G+V
Sbjct: 241 ANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIV 300
Query: 326 SYGKKCAEVGFPGVYTRVTNYIQWIADNI 354
S+G C+ G YT+V NY+ WI +
Sbjct: 301 SWGIGCSRG--YGFYTKVLNYVDWIKKEM 327
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 249 bits (639), Expect = 2e-82
Identities = 84/256 (32%), Positives = 130/256 (50%), Gaps = 20/256 (7%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GG + PW AAI RR G ++CGG+LI+ +V++A HC +
Sbjct: 1 IIGGEFTTIENQPWFAAI----YRRHRGGSVTYVCGGSLISPCWVISATHCF--IDYPKK 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTS--ARKLNDIALFRLRED----APLS 220
E YIV++G L + G + E+E I+H+ Y++ NDIAL ++R A S
Sbjct: 55 EDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPS 114
Query: 221 DLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQI 278
IQ I LP + T + G+G L P+ L+ + ++ + +C+Q
Sbjct: 115 RTIQTISLP----SMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQP 170
Query: 279 FSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
YG+ + +LCA DSC GDSGGPL+ L + + G+VS+G+ CA PG
Sbjct: 171 HY-YGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPG 229
Query: 339 VYTRVTNYIQWIADNI 354
VYTRV++++ WI +
Sbjct: 230 VYTRVSHFLPWIRSHT 245
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 249 bits (637), Expect = 3e-82
Identities = 73/253 (28%), Positives = 126/253 (49%), Gaps = 22/253 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGG + ++PW ++ RR+++ CGG++I R+V+ AAHC+ +
Sbjct: 1 IVGGIEARPYEFPWQVSV-----RRKSSDSH--FCGGSIINDRWVVCAAHCMQGEAPALV 53
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
+ VG D S+ + +++ ++E Y A ND+++ + + PI
Sbjct: 54 S---LVVGEHDSSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPI 110
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGAT 285
C P + + + +GWG+ G P LR+V +++ N C ++ T
Sbjct: 111 CAP----DPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVY--TSDT 164
Query: 286 INENILCAGVLSG--GKDSCGGDSGGPLMYP-LDTKYYIIGVVSYGKKCAEVGFPGVYTR 342
I ++++CA +G +DSC GDSGGPL + ++G+VS+G CA G+PGVY+R
Sbjct: 165 IYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCAS-GYPGVYSR 223
Query: 343 VTNYIQWIADNIS 355
V + WI D I+
Sbjct: 224 VGFHAGWITDTIT 236
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 249 bits (639), Expect = 3e-82
Identities = 79/257 (30%), Positives = 123/257 (47%), Gaps = 24/257 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I GG+ + GQWPW +I G +CGG+L+++++VL+AAHC + E
Sbjct: 1 ITGGSSAVAGQWPWQVSI-------TYEGVH--VCGGSLVSEQWVLSAAHCFPSEHHKEA 51
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
Y V +G+ L+ S ++ I H Y DIAL +L S I+PI
Sbjct: 52 --YEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPI 109
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSP--KLRHVQISVVDNPKCRQIFSNYG 283
LP F V GWG L L+ +++ ++ C +++
Sbjct: 110 SLPA----AQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDA 165
Query: 284 A-----TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
+ E+++CAG + GGKD+C GDSGGPL P++ +Y+ G+VS+G C PG
Sbjct: 166 KPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPG 225
Query: 339 VYTRVTNYIQWIADNIS 355
VYT ++Y WI ++
Sbjct: 226 VYTLASSYASWIQSKVT 242
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 249 bits (638), Expect = 4e-82
Identities = 80/259 (30%), Positives = 127/259 (49%), Gaps = 21/259 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I GG ++ PW AAI K RR +CGG LI+ ++L+AAHC +
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERF---LCGGILISSCWILSAAHCFQERFPPHH 57
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLRED----APLSDL 222
V +G E+E+ I+H+++ NDIAL +L+ D A S +
Sbjct: 58 --LTVILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSV 115
Query: 223 IQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPL-SPKLRHVQISVVDNPKCRQIFSN 281
++ +CLP +L + ++G+G P S +L+ + + + +C
Sbjct: 116 VRTVCLP---PADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHL- 171
Query: 282 YGATINENILCAGVLSGG------KDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVG 335
T+ +N+LCAG G D+C GDSGGPL+ D + ++G++S+G C +
Sbjct: 172 LNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKD 231
Query: 336 FPGVYTRVTNYIQWIADNI 354
PGVYT+VTNY+ WI DN+
Sbjct: 232 VPGVYTKVTNYLDWIRDNM 250
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 250 bits (640), Expect = 4e-82
Identities = 90/277 (32%), Positives = 126/277 (45%), Gaps = 28/277 (10%)
Query: 90 PSPDNNECGVNAFNSSK---RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGAL 146
SP CG + RI+GG+ S G PW+AAI + C G+L
Sbjct: 15 ASPGRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI----YIGDS------FCAGSL 64
Query: 147 ITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL 205
+ +V++AAHC S + V +G T+ + IE+ I + Y+
Sbjct: 65 VHTCWVVSAAHCFSHSPPRDS--VSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPS 122
Query: 206 -NDIALFRLRED----APLSDLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPL- 258
+D+ L RL++ A S +QPICLP F +AGWG
Sbjct: 123 DHDLVLIRLKKKGDRCATRSQFVQPICLP----EPGSTFPAGHKCQIAGWGHLDENVSGY 178
Query: 259 SPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTK 318
S LR + +V + KC YGA I+ N+LCAG D+C GDSGGPL +
Sbjct: 179 SSSLREALVPLVADHKCSSPEV-YGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGV 237
Query: 319 YYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
Y+ G++S+G C + PGVYTRV NY+ WI D I
Sbjct: 238 AYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR 274
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 248 bits (636), Expect = 7e-82
Identities = 77/266 (28%), Positives = 122/266 (45%), Gaps = 30/266 (11%)
Query: 97 CGV----NAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYV 152
CGV + RIV G + G WPW ++ + G CGG+LI + +V
Sbjct: 1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSL------QDKTGFH--FCGGSLINENWV 52
Query: 153 LTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALF 211
+TAAHC + +V G D +S ++I + + +Y S NDI L
Sbjct: 53 VTAAHCGVTTS------DVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLL 106
Query: 212 RLREDAPLSDLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVF-RGPLSPKLRHVQISV 269
+L A S + +CLP S+ F T GWG T + +L+ + +
Sbjct: 107 KLSTAASFSQTVSAVCLP----SASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPL 162
Query: 270 VDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK 329
+ N C++ +G I + ++CAG + G SC GDSGGPL+ + + ++G+VS+G
Sbjct: 163 LSNTNCKKY---WGTKIKDAMICAG--ASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGS 217
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
PGVY RVT + W+ ++
Sbjct: 218 STCSTSTPGVYARVTALVNWVQQTLA 243
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 247 bits (633), Expect = 1e-81
Identities = 76/254 (29%), Positives = 125/254 (49%), Gaps = 22/254 (8%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
+VGGT ++R WP ++ + R+ CGG LI + +V+TAAHCV + T
Sbjct: 1 VVGGTEAQRNSWPSQISL-----QYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELT--- 52
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTS--ARKLNDIALFRLREDAPLSDLIQ 224
+ V VG +L + + +++ ++H + + DIAL RL + L+ +Q
Sbjct: 53 --FRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQ 110
Query: 225 PICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG 283
LP + +P ++ GWG T G L+ L+ + VD C +G
Sbjct: 111 LGVLPR----AGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSY-WG 165
Query: 284 ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK--CAEVGFPGVYT 341
+T+ +++CAG G + C GDSGGPL ++ +Y + GV S+ + C P V+T
Sbjct: 166 STVKNSMVCAG-GDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFT 224
Query: 342 RVTNYIQWIADNIS 355
RV+ YI WI + I+
Sbjct: 225 RVSAYISWINNVIA 238
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 247 bits (632), Expect = 2e-81
Identities = 77/253 (30%), Positives = 117/253 (46%), Gaps = 23/253 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
+VGG ++ WPW ++ + ++ CGG+LI + +V+TAAHCV T
Sbjct: 1 VVGGRVAQPNSWPWQISL-----QYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSART--- 52
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTS--ARKLNDIALFRLREDAPLSDLIQ 224
+ V +G +L + + IH + S DIAL RL A L+ +Q
Sbjct: 53 --WRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQ 110
Query: 225 PICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG 283
LP +++ P ++ GWG T GPLS L+ + VD+ C +G
Sbjct: 111 LAALPP----SNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGW-WG 165
Query: 284 ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVS--YGKKCAEVGFPGVYT 341
+T+ ++CAG G C GDSGGPL ++ YY+ GV S C P V+T
Sbjct: 166 STVKTTMVCAG--GGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFT 223
Query: 342 RVTNYIQWIADNI 354
RV+ YI W+ +
Sbjct: 224 RVSAYISWMNGIM 236
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 246 bits (631), Expect = 3e-81
Identities = 86/257 (33%), Positives = 127/257 (49%), Gaps = 24/257 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGG + R +WPW ++ R + CGG+LI ++VLTAAHCV PD +
Sbjct: 1 IVGGQEAPRSKWPWQVSL------RVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVK-DL 53
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
V + L + + R I+H Q+ + DIAL L E +S + +
Sbjct: 54 ATLRVQLREQHLY--YQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVM 111
Query: 228 LPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSP--KLRHVQISVVDNPKCRQIFSNYG- 283
LP SE F P +V GWG PL P L+ V++ +++N C +
Sbjct: 112 LPPA----SETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAY 167
Query: 284 -----ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
I +++LCAG + +DSC GDSGGPL+ ++ + GVVS+G+ CA+ PG
Sbjct: 168 TGDDVRIIRDDMLCAG--NSQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPG 225
Query: 339 VYTRVTNYIQWIADNIS 355
+YTRVT Y+ WI +
Sbjct: 226 IYTRVTYYLDWIHHYVP 242
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 245 bits (629), Expect = 3e-81
Identities = 83/247 (33%), Positives = 117/247 (47%), Gaps = 25/247 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGGT + G +P++ +I NG P CGG+L+ VLTAAHCVS +
Sbjct: 1 IVGGTSASAGDFPFIVSI-------SRNGGP--WCGGSLLNANTVLTAAHCVSGYAQSGF 51
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
+ + GS+ TS G++ + +H Y+ ND+A+ +L P I
Sbjct: 52 Q---IRAGSLSR--TSGGITSSLSSVRVHPSYSGNN--NDLAILKLSTSIPSGGNIGYAR 104
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATI 286
L S+ + VAGWG+T G +P L V + +V CR + I
Sbjct: 105 LAASG---SDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSA--I 159
Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
+ CAGV SGGKDSC GDSGGP++ D+ +IG VS+G CA + GVY V
Sbjct: 160 TNQMFCAGVSSGGKDSCQGDSGGPIV---DSSNTLIGAVSWGNGCARPNYSGVYASVGAL 216
Query: 347 IQWIADN 353
+I
Sbjct: 217 RSFIDTY 223
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 245 bits (627), Expect = 1e-80
Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 25/250 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GG P+MA++ + NG +CGG L+ ++VLTAAHC++
Sbjct: 1 IIGGREVIPHSRPYMASL-------QRNGSH--LCGGVLVHPKWVLTAAHCLAQRMA--- 48
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL-NDIALFRLREDAPLSDLIQPI 226
+ +G L+ ++ I+ I H +Y L ND+AL +L S I+P+
Sbjct: 49 -QLRLVLGLHTLDSPG--LTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPL 105
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
LP + ++ T +AGWG T G LS LR + + V+D C + +
Sbjct: 106 ALPS----KRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNS-RFWNGS 160
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVT 344
++ +++C S + C GDSGGPL+ + GV+S+ + C ++ P V T V
Sbjct: 161 LSPSMVCLAADSKDQAPCKGDSGGPLVC--GKGRVLAGVLSFSSRVCTDIFKPPVATAVA 218
Query: 345 NYIQWIADNI 354
Y+ WI
Sbjct: 219 PYVSWIRKVT 228
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 243 bits (623), Expect = 5e-80
Identities = 83/255 (32%), Positives = 128/255 (50%), Gaps = 23/255 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
+VGG + WPW ++ + ++G+ CGG L+ + +VLTAAHC+S T
Sbjct: 1 VVGGEDARPNSWPWQVSL-----QYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRT--- 52
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSAR--KLNDIALFRLREDAPLSDLIQ 224
Y V +G L G +++++ + ++H+ + S + NDIAL +L L+D IQ
Sbjct: 53 --YRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQ 110
Query: 225 PICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG 283
CLP + +V GWG G L+ Q+ VVD C + +G
Sbjct: 111 LGCLPA----AGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGW-WG 165
Query: 284 ATINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVSYGKK--CAEVGFPGVY 340
+T+ N++CAG G SC GDSGGPL + ++ + G+VS+G C P V+
Sbjct: 166 STVKTNMICAG-GDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVF 224
Query: 341 TRVTNYIQWIADNIS 355
TRV+NYI WI I+
Sbjct: 225 TRVSNYIDWINSVIA 239
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 242 bits (620), Expect = 2e-79
Identities = 85/256 (33%), Positives = 120/256 (46%), Gaps = 25/256 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GG+ S G PW+AAI + C G+L+ +V++AAHC S +
Sbjct: 1 IIGGSSSLPGSHPWLAAI----YIGDS------FCAGSLVHTCWVVSAAHCFSHSPPRDS 50
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKL-NDIALFRLRED----APLSD 221
V +G T+ + IE+ I + Y+ +D+ L RL++ A S
Sbjct: 51 --VSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQ 108
Query: 222 LIQPICLPYDTNLRSELFERKTP-FVAGWGSTV-FRGPLSPKLRHVQISVVDNPKCRQIF 279
+QPICLP F +AGWG S LR + +V + KC
Sbjct: 109 FVQPICLP----EPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPE 164
Query: 280 SNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGV 339
YGA I+ N+LCAG D+C GDSGGPL + Y+ G++S+G C + PGV
Sbjct: 165 V-YGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGV 223
Query: 340 YTRVTNYIQWIADNIS 355
YTRV NY+ WI D I
Sbjct: 224 YTRVANYVDWINDRIR 239
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 240 bits (614), Expect = 8e-79
Identities = 68/246 (27%), Positives = 106/246 (43%), Gaps = 23/246 (9%)
Query: 110 GGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEP 169
GG ++ Q PW A+ R G+ CGGA++++ +VLTAAHCV
Sbjct: 2 GGEKTDIKQVPWTVAV------RTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPET--- 52
Query: 170 YIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDL-IQPICL 228
++ S +L + G S + Y NDIA+ L L L +P L
Sbjct: 53 IVIQYESTNLWE-DPGKSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKL 111
Query: 229 PYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINE 288
P ++ V+G+G P L+ Q++VVD +CR + ++
Sbjct: 112 P---DIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPI--FLSL 166
Query: 289 NILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQ 348
+ CA G GD+G P + + ++GV +Y K E G P V+T+V +Y+
Sbjct: 167 QVFCAQ--KVGVSLESGDAGDPTVQ----QDTLVGVAAYFPKRPE-GAPEVFTKVGSYVS 219
Query: 349 WIADNI 354
WI D I
Sbjct: 220 WIQDII 225
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 239 bits (612), Expect = 1e-78
Identities = 76/248 (30%), Positives = 120/248 (48%), Gaps = 27/248 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGG + G++P+ ++ R +G CG +++ VLTAAHCV +
Sbjct: 1 IVGGKDAPVGKYPYQVSL-------RLSGSH--RCGASILDNNNVLTAAHCVDGLSNLNR 51
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
VHVG+ L + SG ++E ++++ Y ND+AL L +DL+QPI
Sbjct: 52 --LKVHVGTNYL--SESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIK 107
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
L E E + GWGST G L+ +++ V +C + +
Sbjct: 108 LS----TNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWR----VI 159
Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI 347
++ +C G+ +C GDSGGPL+ IG+VS+G CA +G P VYTRV++++
Sbjct: 160 DSHICTL-TKRGEGACHGDSGGPLVA----NGAQIGIVSFGSPCA-LGEPDVYTRVSSFV 213
Query: 348 QWIADNIS 355
WI N+
Sbjct: 214 SWINANLK 221
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 239 bits (613), Expect = 1e-78
Identities = 84/253 (33%), Positives = 126/253 (49%), Gaps = 25/253 (9%)
Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGE 166
I+GG P+MA+I + G +CGG LI ++VLTAAHC T G+
Sbjct: 2 EIIGGKEVSPHSRPFMASI-------QYGGHH--VCGGVLIDPQWVLTAAHCQYRFTKGQ 52
Query: 167 YEPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
V +G+ L ++ +S ++EI++ I + TS + NDI L +L+ A L+ ++
Sbjct: 53 S--PTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKM 110
Query: 226 ICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPL-SPKLRHVQISVVDNPKCRQIFS-NY 282
+ + T+LRS T V GWG+T S LR V ++V+ C N
Sbjct: 111 LHIRSKTSLRSG-----TKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNG 165
Query: 283 GATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTR 342
I ++++CAG G KDSC GD+GGPL+ K +VS G +C PG+YT
Sbjct: 166 DPFITKDMVCAGDAKGQKDSCKGDAGGPLIC----KGVFHAIVSGGHECGVATKPGIYTL 221
Query: 343 VT-NYIQWIADNI 354
+T Y WI N+
Sbjct: 222 LTKKYQTWIKSNL 234
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 239 bits (611), Expect = 2e-78
Identities = 78/247 (31%), Positives = 118/247 (47%), Gaps = 23/247 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+ G + G +P+ A + ++ +R CGG+LI +++LTAAHCV +
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQRR-----VWCGGSLIDNKWILTAAHCVHDAVS--- 52
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
+V++GS + ER I H + LND+AL ++ +D IQPI
Sbjct: 53 --VVVYLGSAVQ--YEGEAVVNSERIISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPIR 107
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATIN 287
LP + FE V+GWG + + L++ V+DN +C Q + I
Sbjct: 108 LP-SGEELNNKFENIWATVSGWGQS---NTDTVILQYTYNLVIDNDRCAQEY--PPGIIV 161
Query: 288 ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA-EVGFPGVYTRVTNY 346
E+ +C S GK C GDSGGP + K +IGVVS+ E G P ++RVT+Y
Sbjct: 162 ESTICGD-TSDGKSPCFGDSGGPFVL--SDKNLLIGVVSFVSGAGCESGKPVGFSRVTSY 218
Query: 347 IQWIADN 353
+ WI N
Sbjct: 219 MDWIQQN 225
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 239 bits (612), Expect = 7e-78
Identities = 44/266 (16%), Positives = 83/266 (31%), Gaps = 25/266 (9%)
Query: 91 SPDNNECG-VNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITK 149
D+ +C + + PW + + G + CGG +I +
Sbjct: 35 GEDHKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKL------TNSEG--KDFCGGVIIRE 86
Query: 150 RYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIA 209
+VLT A C + V + I+I +H +Y + ND++
Sbjct: 87 NFVLTTAKCSL-----LHRNITVKTYFNRTSQDP--LMIKITHVHVHMRYDADAGENDLS 139
Query: 210 LFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISV 269
L L P+C P L R ++GW L L +++
Sbjct: 140 LLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARN--GTDLGNSLTTRPVTL 197
Query: 270 VDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK 329
V+ +C Q+ T+ C + G + +++ GV+
Sbjct: 198 VEGEECGQV---LNVTVTTRTYCER---SSVAAMHWMDGSVVTREHRGSWFLTGVLGSQ- 250
Query: 330 KCAEVGFPGVYTRVTNYIQWIADNIS 355
+ T+V+ Y W ++
Sbjct: 251 PVGGQAHMVLVTKVSRYSLWFKQIMN 276
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 240 bits (614), Expect = 2e-77
Identities = 80/279 (28%), Positives = 122/279 (43%), Gaps = 43/279 (15%)
Query: 97 CGV--NAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLT 154
CGV F +RI+GG+ ++ +PW GGALI + +VLT
Sbjct: 70 CGVPREPFEEKQRIIGGSDADIKNFPWQVFFD------------NPWAGGALINEYWVLT 117
Query: 155 AAHCVSPDTTGEYEPYIVHVGSIDLEDTSSG--VSIEIERPIIHEQYTSARKL------- 205
AAH V + ++VGS ++ + + E IH +
Sbjct: 118 AAHVVEGNRE-----PTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFD 172
Query: 206 NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHV 265
NDIAL RL++ + + PICLP T+ L + ++GWG T + + +L+
Sbjct: 173 NDIALVRLKDPVKMGPTVSPICLP-GTSSDYNLMDGDLGLISGWGRT-EKRDRAVRLKAA 230
Query: 266 QISVVDNPKCRQIFSN------YGATINENILCAGVLSGGKDSCGGDSGGPLMYPL---D 316
++ V KC+++ N++CAG G DSC GDSGG
Sbjct: 231 RLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAG-GEKGMDSCKGDSGGAFAVQDPNDK 289
Query: 317 TKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
TK+Y G+VS+G +C G+YTRV NY+ WI +
Sbjct: 290 TKFYAAGLVSWGPQCGT---YGLYTRVKNYVDWIMKTMQ 325
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 236 bits (604), Expect = 3e-77
Identities = 73/250 (29%), Positives = 113/250 (45%), Gaps = 31/250 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGG + WP AA+ + + CGG+LI+ ++LTAAHC+
Sbjct: 1 IVGGVEAVPNSWPHQAAL-------FIDDM--YFCGGSLISPEWILTAAHCMDGAGF--- 48
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
V +G+ ++ + + V+I+ +HE Y S NDIA+ RL L+ I +
Sbjct: 49 --VDVVLGAHNIREDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATV 106
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRG-PLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
LP +++ GWG +S LR V + ++ N C + YG
Sbjct: 107 GLP-----STDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAV---YG-I 157
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVT 344
+ + +C +GGK +C GDSGGPL Y G+ S+G E G+P +TRVT
Sbjct: 158 VTDGNICIDS-TGGKGTCNGDSGGPLNY----NGLTYGITSFGAAAGCEAGYPDAFTRVT 212
Query: 345 NYIQWIADNI 354
++ WI
Sbjct: 213 YFLDWIQTQT 222
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 236 bits (604), Expect = 3e-77
Identities = 74/251 (29%), Positives = 118/251 (47%), Gaps = 26/251 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GG +E P+MA++ + NG +CGG L+ +++VL+AAHC+ G+
Sbjct: 1 ILGGREAEAHARPYMASV-------QLNGAH--LCGGVLVAEQWVLSAAHCLEDAADGKV 51
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
+ V +G+ L + S ++ R + H +D+ L +L E A L ++P+
Sbjct: 52 Q---VLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPL 108
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
T VAGWG G L+HV + V+D C + +
Sbjct: 109 PWQR----VDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTH-HDGA 163
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVT 344
I E ++CA S +DSC GD+GGPL+ + GVV+ G + C PG+YTRV
Sbjct: 164 ITERLMCAE--SNRRDSCKGDAGGPLV----CGGVLEGVVTSGSRVCGNRKKPGIYTRVA 217
Query: 345 NYIQWIADNIS 355
+Y WI ++
Sbjct: 218 SYAAWIDSVLA 228
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 235 bits (602), Expect = 4e-77
Identities = 78/250 (31%), Positives = 117/250 (46%), Gaps = 32/250 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGG + P ++ CGG+L+ + +V++AAHC
Sbjct: 1 IVGGYECKAYSQPHQVSL----NSGYH------FCGGSLVNENWVVSAAHCYKSR----- 45
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
V +G +++ T I R I H Y+S NDI L +L + A L+ +QP+
Sbjct: 46 --VEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPV 103
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
LP + T V+GWG+T+ S KL+ + I ++ C ++Y
Sbjct: 104 ALP------TSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCN---NSYPGM 154
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
I + CAG L GGKDSC GDSGGP++ + GVVS+G CAE G PGVY +V
Sbjct: 155 ITNAMFCAGYLEGGKDSCQGDSGGPVV----CNGELQGVVSWGYGCAEPGNPGVYAKVCI 210
Query: 346 YIQWIADNIS 355
+ W+ ++
Sbjct: 211 FNDWLTSTMA 220
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 235 bits (603), Expect = 4e-77
Identities = 67/253 (26%), Positives = 101/253 (39%), Gaps = 29/253 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GG S+ + PW + + KP CGG+++T +V+TAA CV +
Sbjct: 1 IIGGKKSDITKEPWAVGV-------LVDEKP--FCGGSILTANFVITAAQCVDGTKPSDI 51
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSD-LIQPI 226
+H GS ++ + + + I +Y N+ A+ L D + I
Sbjct: 52 S---IHYGSSYR---TTKGTSVMAKKIYIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKI 105
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRG-PLSPKLRHVQISVVDNPKCRQIFSN--Y 282
LP E T V+GWGST F+ S L +VVD C + +
Sbjct: 106 ELP----SLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEA 161
Query: 283 GATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTR 342
I + + CAG GD+G P + ++GV SY FP V+ R
Sbjct: 162 DKYIYDGVFCAGGEYDETYIGYGDAGDPAVQ----NGTLVGVASYISSMPS-EFPSVFLR 216
Query: 343 VTNYIQWIADNIS 355
V Y+ I D IS
Sbjct: 217 VGYYVLDIKDIIS 229
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 235 bits (602), Expect = 6e-77
Identities = 84/250 (33%), Positives = 121/250 (48%), Gaps = 27/250 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGG + G+ PW A + N + E CGG ++++ Y+LTAAHC+
Sbjct: 1 IVGGYNCKDGEVPWQALL--------INEENEGFCGGTILSEFYILTAAHCLYQAKR--- 49
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
+ V VG + E G E+E I H ++T DIA+ RL+ + P
Sbjct: 50 --FKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPA 107
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGAT 285
LP + ++GWG+T G P L+ + V+ KC +Y
Sbjct: 108 SLP-----TAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEA---SYPGK 159
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
I N+ C G L GGKDSC GDSGGP++ + GVVS+G CA+ PGVYT+V N
Sbjct: 160 ITSNMFCVGFLEGGKDSCQGDSGGPVV----CNGQLQGVVSWGDGCAQKNKPGVYTKVYN 215
Query: 346 YIQWIADNIS 355
Y++WI + I+
Sbjct: 216 YVKWIKNTIA 225
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 235 bits (602), Expect = 6e-77
Identities = 67/252 (26%), Positives = 102/252 (40%), Gaps = 27/252 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GG + ++ A+ + CGG LI + +VLTAAHC +
Sbjct: 1 IIGGDECNINEHRFLVAL-------YTSRSRTLFCGGTLINQEWVLTAAHCDRKN----- 48
Query: 168 EPYIVHVG--SIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
+ + +G S + + + E+ DI L RL S I P
Sbjct: 49 --FRIKLGMHSKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAP 106
Query: 226 ICLPYDTNLRSELFERKTPFVAGWGST-VFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
LP S + GWG G V I++++ CR + +
Sbjct: 107 FSLP-----SSPPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFEL 161
Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRV 343
LCAG+L GGKD+C GDSGGPL+ G+ S+G CA+ P YT+V
Sbjct: 162 PATSRTLCAGILEGGKDTCKGDSGGPLIC----NGQFQGIASWGDDPCAQPHKPAAYTKV 217
Query: 344 TNYIQWIADNIS 355
+++ WI + I+
Sbjct: 218 FDHLDWIENIIA 229
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 234 bits (599), Expect = 2e-76
Identities = 72/249 (28%), Positives = 106/249 (42%), Gaps = 23/249 (9%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
+V G P+ R WM ++ R K +CGG+LI + +VLTA C +Y
Sbjct: 1 VVNGIPT-RTNIGWMVSL-------RYRNKH--ICGGSLIKESWVLTARQCFPSRDLKDY 50
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
E +G D+ + ++ + Q + +D+ L +L A L D + I
Sbjct: 51 E---AWLGIHDV---HGRGDEKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTID 104
Query: 228 LPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
LP KT V GWG T LR + ++ N KC Q T+
Sbjct: 105 LPN----YGSTIPEKTSCSVYGWGYTG-LINYDGLLRVAHLYIMGNEKCSQHHR-GKVTL 158
Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
NE+ +CAG G C GD GGPL+ ++GV+ G+ CA PG++ RV Y
Sbjct: 159 NESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYY 218
Query: 347 IQWIADNIS 355
+WI I
Sbjct: 219 AKWIHKIIL 227
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 234 bits (598), Expect = 2e-76
Identities = 60/252 (23%), Positives = 104/252 (41%), Gaps = 30/252 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
+VGG P G PW ++ R G+ CGG+L+ ++++LTA C S
Sbjct: 1 VVGGHP---GNSPWTVSL------RNRQGQH--FCGGSLVKEQWILTARQCFSSCHM-PL 48
Query: 168 EPYIVHVGSIDL---EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQ 224
Y V +G++ S + + + + + + L +L L+ +
Sbjct: 49 TGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSG------SQLVLLKLERSVTLNQRVA 102
Query: 225 PICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYG 283
ICLP + T +AGWG T G L ++V+ N +C +
Sbjct: 103 LICLPP----EWYVVPPGTKCEIAGWGETKGTGN-DTVLNVALLNVISNQECNIK---HR 154
Query: 284 ATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRV 343
+ E+ +C L +C GD GGPL + + G++ + CA +P V+TRV
Sbjct: 155 GRVRESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRV 214
Query: 344 TNYIQWIADNIS 355
+ ++ WI +
Sbjct: 215 SVFVDWIHKVMR 226
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 233 bits (596), Expect = 4e-76
Identities = 72/249 (28%), Positives = 108/249 (43%), Gaps = 27/249 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GG ++ P+MA + ++ CGG LI +VLTAAHC
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLK------RCGGFLIRDDFVLTAAHCWGS------ 48
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
V +G+ ++ E + I ++RPI H Y NDI L +L A + +QP+
Sbjct: 49 -SINVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPL 107
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
LP + VAGWG T G S L+ V+++V ++ KC
Sbjct: 108 RLPS----NKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDL--RHYY 161
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
+ LC G K S GDSGGPL+ G+VSYG+ P T+V++
Sbjct: 162 DSTIELCVGDPEIKKTSFKGDSGGPLVC----NKVAQGIVSYGRNNGM--PPRACTKVSS 215
Query: 346 YIQWIADNI 354
++ WI +
Sbjct: 216 FVHWIKKTM 224
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 232 bits (595), Expect = 6e-76
Identities = 80/249 (32%), Positives = 116/249 (46%), Gaps = 28/249 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GG ++ P+MA + FK + +CGG L+ + +VLTAAHC+
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSH------ICGGFLVREDFVLTAAHCLGSS----- 49
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
V +G+ ++ E + I + RPI H Y NDI L +L A ++D + PI
Sbjct: 50 --INVTLGAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPI 107
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
LP + VAGWG P + KL+ V + V KC F NY
Sbjct: 108 NLPR----SLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNY--- 160
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
I +CAG S K+S GDSGGPL+ G+VSYG+ P VYTR+++
Sbjct: 161 IPFTQICAGDPSKRKNSFSGDSGGPLVC----NGVAQGIVSYGRNDG--TTPDVYTRISS 214
Query: 346 YIQWIADNI 354
++ WI +
Sbjct: 215 FLSWIHSTM 223
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 232 bits (595), Expect = 7e-76
Identities = 76/254 (29%), Positives = 113/254 (44%), Gaps = 26/254 (10%)
Query: 111 GTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPY 170
G + W W ++ + +G CGG+LI +V+TA HC+S T Y
Sbjct: 2 GEDAVPYSWSWQVSL-----QYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRT-----Y 51
Query: 171 IVHVGSIDLEDTSSG---VSIEIERPIIHEQYTS--ARKLNDIALFRLREDAPLSDLIQP 225
V +G D + I +H + S NDIAL +L A L D +Q
Sbjct: 52 QVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQL 111
Query: 226 ICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
LP ++ + P +++GWG GPL KL+ + VD C Q +G
Sbjct: 112 ANLPPA----GDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDW-WGI 166
Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPL-DTKYYIIGVVS--YGKKCAEVGFPGVYT 341
T+ + ++CAG + C GDSGGPL P D + + GV S C + P V+T
Sbjct: 167 TVKKTMVCAG--GDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFT 224
Query: 342 RVTNYIQWIADNIS 355
RV+ +I WI + I+
Sbjct: 225 RVSAFIDWIDETIA 238
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 232 bits (594), Expect = 8e-76
Identities = 86/250 (34%), Positives = 116/250 (46%), Gaps = 31/250 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
+V G P ++ P+ AA+ +G +CGG LI +VLTAAHC P+
Sbjct: 1 LVHGGPCDKTSHPYQAAL-------YTSGHL--LCGGVLIHPLWVLTAAHCKKPN----- 46
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
V +G +L + SS + R +IH Y +A DI L RL A LS+LIQP+
Sbjct: 47 --LQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPL 104
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
L R + + GWG T G ++ I +V +C Y I
Sbjct: 105 PLE-----RDCSANTTSCHILGWGKT-ADGDFPDTIQCAYIHLVSREECE---HAYPGQI 155
Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTN 345
+N+LCAG GKDSC GDSGGPL+ ++ G+VS+G C PGVYT V
Sbjct: 156 TQNMLCAGDEKYGKDSCQGDSGGPLV----CGDHLRGLVSWGNIPCGSKEKPGVYTNVCR 211
Query: 346 YIQWIADNIS 355
Y WI I
Sbjct: 212 YTNWIQKTIQ 221
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 234 bits (600), Expect = 1e-75
Identities = 49/309 (15%), Positives = 88/309 (28%), Gaps = 29/309 (9%)
Query: 52 GLEGR----LPKVCCPQHTLTNDQPTT-TTRRPNNRNGAFTKLPSPDNNECGVNAFNSSK 106
G EG C P+ T +L +
Sbjct: 33 GYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGV 92
Query: 107 RIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGE 166
+ PW + + G + CGG +I + +VLT A C
Sbjct: 93 LTSEKRAPDLQDLPWQVKL------TNSEG--KDFCGGVIIRENFVLTTAKCSL-----L 139
Query: 167 YEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
+ V + I+I +H +Y + ND++L L P+
Sbjct: 140 HRNITVKTYFNRTSQDP--LMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPV 197
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATI 286
C P L R ++GW L L +++V+ +C Q+ T+
Sbjct: 198 CTPEKDFAEHLLIPRTRGLLSGWARN--GTDLGNSLTTRPVTLVEGEECGQV---LNVTV 252
Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
C + G + +++ GV+ + T+V+ Y
Sbjct: 253 TTRTYCER---SSVAAMHWMDGSVVTREHRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRY 308
Query: 347 IQWIADNIS 355
W ++
Sbjct: 309 SLWFKQIMN 317
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 231 bits (592), Expect = 2e-75
Identities = 74/253 (29%), Positives = 117/253 (46%), Gaps = 29/253 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GG P+M + + K +C GALI K +VLTAAHC
Sbjct: 1 IIGGNEVTPHSRPYMVLL-------SLDRKT--ICAGALIAKDWVLTAAHCNLNKR---- 47
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
V +G+ + + + + +++ + Y A + D+ L +L E A ++ + +
Sbjct: 48 --SQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTIL 105
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIF-SNYGA 284
LP + + + T VAGWG T S LR V+I+++D C N+
Sbjct: 106 HLPK----KGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNP 161
Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK--CAEVGFPGVYTR 342
I N++CAG L GG+DSC GDSG PL+ + GV S+G + C + PGVY
Sbjct: 162 VIGMNMVCAGSLRGGRDSCNGDSGSPLLC----EGVFRGVTSFGLENKCGDPRGPGVYIL 217
Query: 343 VT-NYIQWIADNI 354
++ ++ WI I
Sbjct: 218 LSKKHLNWIIMTI 230
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 230 bits (588), Expect = 6e-75
Identities = 77/250 (30%), Positives = 119/250 (47%), Gaps = 28/250 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GG S P+MA + +CGG LI++++VLTAAHC +
Sbjct: 1 IIGGVESIPHSRPYMAHL-----DIVTEKGLRVICGGFLISRQFVLTAAHCKGRE----- 50
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
V +G+ D+ + S+ I++E+ IIHE Y S L+DI L +L + L+ + +
Sbjct: 51 --ITVILGAHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVV 108
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
LP S+ + AGWG T R P S LR V++ ++D C Y
Sbjct: 109 PLP----SPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVD----YRYY 160
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
+ +C G + + + GDSGGPL+ G+VSYG A+ P ++TRV+
Sbjct: 161 EYKFQVCVGSPTTLRAAFMGDSGGPLLC----AGVAHGIVSYGHPDAK--PPAIFTRVST 214
Query: 346 YIQWIADNIS 355
Y+ WI I+
Sbjct: 215 YVPWINAVIN 224
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 229 bits (586), Expect = 1e-74
Identities = 73/249 (29%), Positives = 109/249 (43%), Gaps = 29/249 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GG S P+MA + + ++ CGG L+ + +VLTAAHC +
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQS------RCGGFLVREDFVLTAAHCWGSN----- 49
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
V +G+ ++ ++ I R I H QY NDI L +L + + P+
Sbjct: 50 --INVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPV 107
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
LP E T VAGWG + LR VQ+ V + +C +IF +Y
Sbjct: 108 ALPR----AQEGLRPGTLCTVAGWGRVSM-RRGTDTLREVQLRVQRDRQCLRIFGSY--- 159
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
+C G K + GDSGGPL+ G+VSYGK P V+TRV++
Sbjct: 160 DPRRQICVGDRRERKAAFKGDSGGPLLC----NNVAHGIVSYGKSSGV--PPEVFTRVSS 213
Query: 346 YIQWIADNI 354
++ WI +
Sbjct: 214 FLPWIRTTM 222
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 229 bits (586), Expect = 1e-74
Identities = 78/250 (31%), Positives = 116/250 (46%), Gaps = 31/250 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGG P+ ++ CGG+LI ++V++AAHC
Sbjct: 1 IVGGYTCGANTVPYQVSL----NSGYH------FCGGSLINSQWVVSAAHCYKSG----- 45
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
V +G ++ + I + I+H Y S NDI L +L+ A L+ + I
Sbjct: 46 --IQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASI 103
Query: 227 CLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGAT 285
LP S ++GWG+T G P L+ ++ ++ + C+ S Y
Sbjct: 104 SLP-----TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK---SAYPGQ 155
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
I N+ CAG L GGKDSC GDSGGP++ + G+VS+G CA+ PGVYT+V N
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVV----CSGKLQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 346 YIQWIADNIS 355
Y+ WI I+
Sbjct: 212 YVSWIKQTIA 221
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 228 bits (585), Expect = 2e-74
Identities = 68/249 (27%), Positives = 105/249 (42%), Gaps = 26/249 (10%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GG P+MA G + CGG L+ ++VLTAAHC
Sbjct: 1 IIGGNEISPHSRPYMAYY-----EFLKVGGKKMFCGGFLVRDKFVLTAAHCKGRS----- 50
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
V +G+ ++ + I + + I H Y + NDI L +L +A + ++P+
Sbjct: 51 --MTVTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPL 108
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
LP R+ + +VAGWG G L V+++V + C F +
Sbjct: 109 NLP----RRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQF--QSSY 162
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
N +C G S DSGGPL+ K G+VSYG+ P V+TRV +
Sbjct: 163 NRANEICVGDSKIKGASFEEDSGGPLVC----KRAAAGIVSYGQTDG--SAPQVFTRVLS 216
Query: 346 YIQWIADNI 354
++ WI +
Sbjct: 217 FVSWIKKTM 225
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 228 bits (584), Expect = 3e-74
Identities = 77/250 (30%), Positives = 119/250 (47%), Gaps = 31/250 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+ G P RG PW A+ + + CGG L+ +R+VLTAAHC
Sbjct: 1 IIDGAPCARGSHPWQVAL-------LSGNQL--HCGGVLVNERWVLTAAHCKMN------ 45
Query: 168 EPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPIC 227
Y VH+GS L D I+ + H Y++ +ND+ L +L A LS +++ +
Sbjct: 46 -EYTVHLGSDTLGD-RRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVR 103
Query: 228 LPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGATI 286
LP T V+GWG+T P L V + ++ C ++ Y +
Sbjct: 104 LP-----SRCEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKV---YKDLL 155
Query: 287 NENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVTN 345
++LCAG+ K++C GDSGGPL+ + + G+VS+G C + PGVYT+V
Sbjct: 156 ENSMLCAGIPDSKKNACNGDSGGPLVC----RGTLQGLVSWGTFPCGQPNDPGVYTQVCK 211
Query: 346 YIQWIADNIS 355
+ +WI D +
Sbjct: 212 FTKWINDTMK 221
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 227 bits (582), Expect = 4e-74
Identities = 71/251 (28%), Positives = 107/251 (42%), Gaps = 32/251 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+ G PW AA+ + C G L+ ++VL+AAHC
Sbjct: 1 IINGEDCSPHSQPWQAAL-------VMENEL--FCSGVLVHPQWVLSAAHCFQNS----- 46
Query: 168 EPYIVHVG--SIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
Y + +G S++ + +E + H +Y ND+ L +L E SD I+
Sbjct: 47 --YTIGLGLHSLEADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRS 104
Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
I + + V+GWG G + L+ V +SVV C Y
Sbjct: 105 ISIA-----SQCPTAGNSCLVSGWGLLA-NGRMPTVLQCVNVSVVSEEVCS---KLYDPL 155
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYTRVT 344
+ ++ CAG KDSC GDSGGPL+ Y+ G+VS+G C +VG PGVYT +
Sbjct: 156 YHPSMFCAGGGQDQKDSCNGDSGGPLIC----NGYLQGLVSFGKAPCGQVGVPGVYTNLC 211
Query: 345 NYIQWIADNIS 355
+ +WI +
Sbjct: 212 KFTEWIEKTVQ 222
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 227 bits (581), Expect = 6e-74
Identities = 73/250 (29%), Positives = 106/250 (42%), Gaps = 34/250 (13%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGG + Q+P++A+I + G+ CGGALI R+V+TAA C G
Sbjct: 1 IVGGRKARPRQFPFLASI-------QNQGRH--FCGGALIHARFVMTAASCFQSQNPGVS 51
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
V +G+ DL + Y + LND+ L +L +A L+ + +
Sbjct: 52 T---VVLGAYDLRRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTIL 108
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
LP L++ E T VAGWGS G LS R V ++V +C
Sbjct: 109 PLP----LQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQC---------- 154
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
N +C GVL+ C GD G PL+ + GV S+ G P +TRV
Sbjct: 155 -RPNNVCTGVLTRRGGICNGDGGTPLVC----EGLAHGVASFSLGPCGRG-PDFFTRVAL 208
Query: 346 YIQWIADNIS 355
+ WI ++
Sbjct: 209 FRDWIDGVLN 218
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 237 bits (607), Expect = 7e-74
Identities = 92/341 (26%), Positives = 135/341 (39%), Gaps = 41/341 (12%)
Query: 25 QCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTLTNDQPTTTTRRPNNRNG 84
C+ I + + N G G LT D R +
Sbjct: 247 HCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLP- 305
Query: 85 AFTKLPSPDNNECGV--NAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMC 142
CGV KRIVGG ++ G PW AI + C
Sbjct: 306 ---------KLSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAI-------KDASGI--TC 347
Query: 143 GGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSG--VSIEIERPIIHEQYT 200
GG I ++LTAAHC+ T Y+ + +D V ++R I HE Y
Sbjct: 348 GGIYIGGCWILTAAHCLRASKTHRYQ---IWTTVVDWIHPDLKRIVIEYVDRIIFHENYN 404
Query: 201 SARKLNDIALFRLREDAPLSDL----IQPICLPYDTNLRSELFERKTP-FVAGWGSTVFR 255
+ NDIAL +++D D P C+P+ LF+ V+GWG
Sbjct: 405 AGTYQNDIALIEMKKDGNKKDCELPRSIPACVPW----SPYLFQPNDTCIVSGWGREKDN 460
Query: 256 GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYP- 314
L+ ++ ++ N C + + + + CAG G D+C GDSGGPL+
Sbjct: 461 ER-VFSLQWGEVKLISN--CSKFY--GNRFYEKEMECAGTYDGSIDACKGDSGGPLVCMD 515
Query: 315 LDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
+ Y+ GVVS+G+ C + FPGVYT+V NY WI+ ++
Sbjct: 516 ANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISYHVG 556
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 227 bits (581), Expect = 7e-74
Identities = 65/251 (25%), Positives = 101/251 (40%), Gaps = 29/251 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
+VGG + P++ A+ + C GALI + +VLTAAHC +
Sbjct: 1 VVGGDECNINEHPFLVAL-------YTSASSTIHCAGALINREWVLTAAHCDRRN----- 48
Query: 168 EPYIVHVG--SIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
+ +G S ++ + + + + DI L RLR S I P
Sbjct: 49 --IRIKLGMHSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAP 106
Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
+ LP + GWG I +V + C ++
Sbjct: 107 VSLP-----SRSRGVGSRCRIMGWGKIS-TTTYPDVPHCTNIFIVKHKWCEPLY--PWVP 158
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVT 344
+ LCAG+L GG+D+C GDSGGPL+ + G+V+ G + C + P VYT+V
Sbjct: 159 ADSRTLCAGILKGGRDTCHGDSGGPLIC----NGEMHGIVAGGSEPCGQHLKPAVYTKVF 214
Query: 345 NYIQWIADNIS 355
+Y WI I+
Sbjct: 215 DYNNWIQSIIA 225
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 225 bits (577), Expect = 2e-73
Identities = 71/249 (28%), Positives = 115/249 (46%), Gaps = 28/249 (11%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GGT + P+MA + + P CGG LI + +VLTAAHC
Sbjct: 1 IIGGTECKPHSRPYMAYL-----EIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRS----- 50
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
V +G+ ++ E+ + +E+ + H +Y ++ +DI L +L+E A L+ + +
Sbjct: 51 --ITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTL 108
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
P + VAGWG T P S L+ V++ ++D C S++
Sbjct: 109 PFPS----QFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQAC----SHFRDF 160
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
+ LC G K + GDSGGPL+ G+VSYG+ A+ P V+TR+++
Sbjct: 161 DHNLQLCVGNPRKTKSAFKGDSGGPLLC----AGVAQGIVSYGRSDAK--PPAVFTRISH 214
Query: 346 YIQWIADNI 354
Y WI +
Sbjct: 215 YRPWINQIL 223
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 224 bits (573), Expect = 9e-73
Identities = 58/250 (23%), Positives = 95/250 (38%), Gaps = 36/250 (14%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGG + WP+M ++ + G CG LI +V++AAHCV+
Sbjct: 1 IVGGRRARPHAWPFMVSL-------QLRGGH--FCGATLIAPNFVMSAAHCVANVNVRAV 51
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
V +G+ +L ++R I Y LNDI + +L A ++ +Q
Sbjct: 52 R---VVLGAHNLSRREPTRQVFAVQR-IFENGYDPVNLLNDIVILQLNGSATINANVQVA 107
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
LP + GWG ++ L+ + ++VV +
Sbjct: 108 QLPA----QGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTS------------L 151
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVT 344
+ +C V C GDSG PL+ I G+ S+ + CA +P + V
Sbjct: 152 CRRSNVCTLVRGRQAGVCFGDSGSPLVC----NGLIHGIASFVRGGCASGLYPDAFAPVA 207
Query: 345 NYIQWIADNI 354
++ WI I
Sbjct: 208 QFVNWIDSII 217
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 224 bits (573), Expect = 1e-72
Identities = 68/252 (26%), Positives = 106/252 (42%), Gaps = 34/252 (13%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
++GG + ++A + ANG +CGG LI + +VLTA HC +
Sbjct: 1 VIGGDECNINEHRFLALV-------YANGS---LCGGTLINQEWVLTARHCDRGN----- 45
Query: 168 EPYIVHVG--SIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
+++G ++ + + + E+ DI L RL S I P
Sbjct: 46 --MRIYLGMHNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAP 103
Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTV-FRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
+ LP + + GWG+ L I+++D C+ +
Sbjct: 104 LSLP-----SNPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKG--- 155
Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRV 343
+ LCAG+L GGKD+C GDSGGPL+ G++S G CA+ PG+YT+V
Sbjct: 156 -LAATTLCAGILEGGKDTCKGDSGGPLIC----NGQFQGILSVGGNPCAQPRKPGIYTKV 210
Query: 344 TNYIQWIADNIS 355
+Y WI IS
Sbjct: 211 FDYTDWIQSIIS 222
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 224 bits (572), Expect = 3e-72
Identities = 70/265 (26%), Positives = 112/265 (42%), Gaps = 42/265 (15%)
Query: 105 SKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTT 164
+ V PW A+ K CGG L+ + +VLTAAHC +
Sbjct: 1 AAPPVQSQVDCENSQPWHVAV-------YRFNKY--QCGGVLLDRNWVLTAAHCYNDK-- 49
Query: 165 GEYEPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKL-----------NDIALFR 212
Y V +G + ED S + + I H + + ND+ L R
Sbjct: 50 -----YQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLR 104
Query: 213 LREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTV-FRGPLSPKLRHVQISVVD 271
L + A ++D+++PI LP E T +GWGST + L+ V + ++
Sbjct: 105 LSKPADITDVVKPITLP-----TEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLP 159
Query: 272 NPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK- 330
N C + + + +LCAG + GG +C DSGGPL+ + G+ S+G +
Sbjct: 160 NEDCD---KAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLI----CDGILQGITSWGPEP 212
Query: 331 CAEVGFPGVYTRVTNYIQWIADNIS 355
C E P VYT++ + WI + ++
Sbjct: 213 CGEPTEPSVYTKLIKFSSWIRETMA 237
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 222 bits (569), Expect = 3e-72
Identities = 65/250 (26%), Positives = 100/250 (40%), Gaps = 33/250 (13%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGG ++ P+MA++ + CGG LI +VLTAAHC+
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSH------FCGGTLIHPSFVLTAAHCLRDIPQRLV 54
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
V +G+ ++ + + ++ Y + KLNDI L +L A LS + +
Sbjct: 55 N---VVLGAHNVRTQEPTQQHFSVAQVFLNN-YDAENKLNDILLIQLSSPANLSASVATV 110
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGAT 285
LP + + T GWG P + L+ + ++VV
Sbjct: 111 QLP----QQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTF------------F 154
Query: 286 INENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRVT 344
+ +C V C GDSGGPL+ I G+ S+ CA FP +TRV
Sbjct: 155 CRPHNICTFVPRRKAGICFGDSGGPLIC----DGIIQGIDSFVIWGCATRLFPDFFTRVA 210
Query: 345 NYIQWIADNI 354
Y+ WI +
Sbjct: 211 LYVDWIRSTL 220
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 223 bits (570), Expect = 4e-72
Identities = 73/262 (27%), Positives = 114/262 (43%), Gaps = 42/262 (16%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
+VGG E+ PW A+ + +CGG L+ + +VLTAAHC
Sbjct: 1 VVGGFNCEKNSQPWQVAV-------YYQKEH--ICGGVLLDRNWVLTAAHCYVDQ----- 46
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKL-----------NDIALFRLRE 215
Y V +G L ++ S + + H + + + +D+ L RL +
Sbjct: 47 --YEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSK 104
Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTV-FRGPLSPKLRHVQISVVDNPK 274
A ++D+++PI LP E +GWGS R L+ V I+++ N
Sbjct: 105 PADITDVVKPIALP-----TKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNEN 159
Query: 275 CRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAE 333
C Y + + +LCAG + GGKD+C DSGGPL+ + G SYG C +
Sbjct: 160 CA---KVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLIC----DGILQGTTSYGPVPCGK 212
Query: 334 VGFPGVYTRVTNYIQWIADNIS 355
G P +YT + + WI D +
Sbjct: 213 PGVPAIYTNLIKFNSWIKDTMM 234
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 222 bits (568), Expect = 9e-72
Identities = 66/252 (26%), Positives = 101/252 (40%), Gaps = 31/252 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
++GG + + A + C G LI + +VLTAAHC + +
Sbjct: 1 VIGGDECNINEHRSLVAF-------FNSTGF--FCSGTLINEEWVLTAAHCDNTN----- 46
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIH-EQYTSARKLNDIALFRLREDAPLSDLIQP 225
+ + +G + + I + DI L +L S+ I P
Sbjct: 47 --FQMKLGVHSKKVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVP 104
Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTV-FRGPLSPKLRHVQISVVDNPKCRQIFSNYGA 284
+ LP S + GWGS + I+++D+ C+ +
Sbjct: 105 LSLP-----SSPPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPEL-- 157
Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRV 343
LCAG+L GGKD+CGGDSGGPL+ G+VS+G C + PGVYT+V
Sbjct: 158 LTEYRTLCAGILEGGKDTCGGDSGGPLIC----NGQFQGIVSFGAHPCGQGLKPGVYTKV 213
Query: 344 TNYIQWIADNIS 355
+Y WI I+
Sbjct: 214 FDYNHWIQSIIA 225
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 221 bits (565), Expect = 2e-71
Identities = 69/252 (27%), Positives = 110/252 (43%), Gaps = 32/252 (12%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+ G+ + PW AA+ + + CG L+ +++LTAAHC
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQL--------YCGAVLVHPQWLLTAAHCRK------- 45
Query: 168 EPYIVHVGSIDLEDT--SSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQP 225
+ + V +G L S + + I H Y+ ND+ L +L + ++P
Sbjct: 46 KVFRVRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRP 105
Query: 226 ICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPKCRQIFSNYGA 284
I + V+GWG+T PK L+ + ISV+ +C Y
Sbjct: 106 INVS-----SHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCE---DAYPR 157
Query: 285 TINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAEVGFPGVYTRV 343
I++ + CAG G+DSC GDSGGP++ + G+VS+G CA PGVYT +
Sbjct: 158 QIDDTMFCAGD-KAGRDSCQGDSGGPVVC----NGSLQGLVSWGDYPCARPNRPGVYTNL 212
Query: 344 TNYIQWIADNIS 355
+ +WI + I
Sbjct: 213 CKFTKWIQETIQ 224
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 219 bits (560), Expect = 1e-70
Identities = 79/262 (30%), Positives = 122/262 (46%), Gaps = 42/262 (16%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGG E+ PW + + G+ +CGG L+ ++VLTAAHC+
Sbjct: 1 IVGGWECEKHSQPWQVLV-------ASRGRA--VCGGVLVHPQWVLTAAHCIRNK----- 46
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKLN-----------DIALFRLRE 215
++ +G L +G ++ H Y + N D+ L RL E
Sbjct: 47 --SVILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSE 104
Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPK 274
A L+D ++ + LP E T + +GWGS L+PK L+ V + V+ N
Sbjct: 105 PAELTDAVKVMDLP-----TQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDV 159
Query: 275 CRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CAE 333
C Q+ + + + +LCAG +GGK +C GDSGGPL+ + G+ S+G + CA
Sbjct: 160 CAQV---HPQKVTKFMLCAGRWTGGKSTCSGDSGGPLV----CNGVLQGITSWGSEPCAL 212
Query: 334 VGFPGVYTRVTNYIQWIADNIS 355
P +YT+V +Y +WI D I
Sbjct: 213 PERPSLYTKVVHYRKWIKDTIV 234
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 217 bits (555), Expect = 7e-70
Identities = 76/263 (28%), Positives = 120/263 (45%), Gaps = 43/263 (16%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGG E+ PW AA+ + CGG L+ +++VLTAAHC+S +
Sbjct: 1 IVGGWECEQHSQPWQAAL------YHFSTF---QCGGILVHRQWVLTAAHCISDN----- 46
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKL-----------NDIALFRLRE 215
Y + +G +L +D ++ + + H + + +D+ L RL E
Sbjct: 47 --YQLWLGRHNLFDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTE 104
Query: 216 DAP-LSDLIQPICLPYDTNLRSELFERKTPFVAGWGST-VFRGPLSPKLRHVQISVVDNP 273
A ++D ++ + LP E T +GWGS L+ V + ++ N
Sbjct: 105 PADTITDAVKVVELP-----TEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPND 159
Query: 274 KCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK-CA 332
+C+ + + + +LC G L GGKD+C GDSGGPLM + GV S+G C
Sbjct: 160 ECK---KAHVQKVTDFMLCVGHLEGGKDTCVGDSGGPLM----CDGVLQGVTSWGYVPCG 212
Query: 333 EVGFPGVYTRVTNYIQWIADNIS 355
P V RV +Y++WI D I+
Sbjct: 213 TPNKPSVAVRVLSYVKWIEDTIA 235
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 216 bits (552), Expect = 2e-69
Identities = 76/262 (29%), Positives = 112/262 (42%), Gaps = 44/262 (16%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IVGG E+ PW A+ E++CGG LI +V+TAAHC S +
Sbjct: 1 IVGGYKCEKNSQPWQVAV-----------INEYLCGGVLIDPSWVITAAHCYSNN----- 44
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKL-----------NDIALFRLRE 215
Y V +G +L +D + + H Y ND+ L L E
Sbjct: 45 --YQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSE 102
Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPK-LRHVQISVVDNPK 274
A ++ ++ I LP E T +GWGST + L+ V I ++ N K
Sbjct: 103 PADITGGVKVIDLP-----TKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEK 157
Query: 275 CRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAE 333
C Y + + +LCAG + GGKD+C GDSGGPL+ + G+ S G CA+
Sbjct: 158 CI---ETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLI----CDGVLQGITSGGATPCAK 210
Query: 334 VGFPGVYTRVTNYIQWIADNIS 355
P +Y ++ + WI +
Sbjct: 211 PKTPAIYAKLIKFTSWIKKVMK 232
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 215 bits (551), Expect = 3e-69
Identities = 69/262 (26%), Positives = 112/262 (42%), Gaps = 42/262 (16%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GG E+ PW A+ G CGG L+ ++VLTAAHC+S D
Sbjct: 1 IIGGWECEKHSKPWQVAV-------YHQGHF--QCGGVLVHPQWVLTAAHCMSDD----- 46
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKL-----------NDIALFRLRE 215
Y + +G +L +D + ++ + Q+ + +D+ L RL +
Sbjct: 47 --YQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQ 104
Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST-VFRGPLSPKLRHVQISVVDNPK 274
A ++D ++ + LP E T + +GWG F S L+ V++ + N K
Sbjct: 105 PARITDAVKILDLP-----TQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEK 159
Query: 275 CRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK-KCAE 333
C Y + E +LCA C GDSGG L+ G+ S+G +CA+
Sbjct: 160 CA---RAYPEKMTEFVLCATHRDDSGSICLGDSGGALI----CDGVFQGITSWGYSECAD 212
Query: 334 VGFPGVYTRVTNYIQWIADNIS 355
V+T+V + +WI + I
Sbjct: 213 FNDNFVFTKVMPHKKWIKETIE 234
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 214 bits (548), Expect = 7e-69
Identities = 71/253 (28%), Positives = 108/253 (42%), Gaps = 35/253 (13%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+ G PW AA+ + +CGG L+ R+VLTAAHC
Sbjct: 1 ILEGRECIPHSQPWQAAL-------FQGERL--ICGGVLVGDRWVLTAAHCKK------- 44
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQYTSARKL---NDIALFRLREDAPLSDLI 223
+ Y V +G L I++ + I H Y ++ +DI L RL+ A L D +
Sbjct: 45 QKYSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKV 104
Query: 224 QPICLPYDTNLRSELFERKTPFVAGWGST-VFRGPLSPKLRHVQISVVDNPKCRQIFSNY 282
+P+ L + ++GWG+ + L ++ + KC Y
Sbjct: 105 KPVQLA-----NLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCE---RAY 156
Query: 283 GATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG-KKCAEVGFPGVYT 341
I E ++CAG S G D+C GDSGGPL+ + G+ S+G C + PGVYT
Sbjct: 157 PGKITEGMVCAGS-SNGADTCQGDSGGPLV----CDGMLQGITSWGSDPCGKPEKPGVYT 211
Query: 342 RVTNYIQWIADNI 354
++ Y WI +
Sbjct: 212 KICRYTTWIKKTM 224
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 221 bits (564), Expect = 4e-68
Identities = 62/348 (17%), Positives = 116/348 (33%), Gaps = 71/348 (20%)
Query: 53 LEGRLPKVCCPQHTLTNDQPTTTTRRPNNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGT 112
L K +H + + + CGV +
Sbjct: 180 LNELGSKKDGERHAFILQDTKALHQVFEHMLDV----SKLTDTICGV-------GNMSAN 228
Query: 113 PSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIV 172
S++ + PW I + + C GALI+ ++VLTAAHC ++ + V
Sbjct: 229 ASDQERTPWHVTI-------KPKSQE--TCRGALISDQWVLTAAHCF--RDGNDHSLWRV 277
Query: 173 HVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL---------NDIALFRLREDAPLSDLI 223
+VG G IE+ +I + K +DIAL +L + +S
Sbjct: 278 NVGDPKS---QWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHA 334
Query: 224 QPICLP--YDTNLRSELFERKTPFVAGWGSTVFRGPLSP--KLRHVQISV-----VDNPK 274
+PICLP + NL + T + + L ++++ V+
Sbjct: 335 RPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTS 394
Query: 275 CRQIFSN----------YGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGV 324
C ++ S + + LC+G + C G+SGG + +++ +G+
Sbjct: 395 CAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQ-EDESPCKGESGGAVFLERRFRFFQVGL 453
Query: 325 VSYGKKCAEVG-----------------FPGVYTRVTNYIQWIADNIS 355
VS+G +G + + W+ ++
Sbjct: 454 VSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLG 501
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 210 bits (537), Expect = 4e-64
Identities = 73/383 (19%), Positives = 124/383 (32%), Gaps = 78/383 (20%)
Query: 22 SIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCPQHTLTNDQPTTTTRRPNN 81
IR Y+ +R NPR Y+ G+ + +V D + +
Sbjct: 137 EIRDLLYI----GKDRKNPRE-DYLDVYVFGVGPLVNQVNINALASKKDNEQHVCKVKDM 191
Query: 82 RNGAFTKLPSPDNNE----CGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGK 137
D ++ CG+ ++ + PW A I K
Sbjct: 192 ECLEDVFYQMIDESQSLSLCGM-------VWEHRKGTDYHKQPWQAKI-----SVIRPSK 239
Query: 138 PEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHE 197
C GA++++ +VLTAAHC + D E+ V VG +EIE + H
Sbjct: 240 GHESCMGAVVSEYFVLTAAHCFTVDD-KEHS-IKVSVGGEK-------RDLEIEVVLFHP 290
Query: 198 QYTSARKL---------NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAG 248
Y K D+AL +L+ I+PICLP + P
Sbjct: 291 NYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLP---CTEGTTRALRLPPTTT 347
Query: 249 WGST------------VFRGPLSPKLRHVQISVVDNPKCRQ------------IFSNYGA 284
+F KL ++ + + K +
Sbjct: 348 CQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISE 407
Query: 285 TINENILCAGVLSG--GKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKK--CAEVG----- 335
+ LC G +S ++C GDSGGPL+ +++ +GV+S+G C
Sbjct: 408 VVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQV 467
Query: 336 ---FPGVYTRVTNYIQWIADNIS 355
+ + + W+ + +
Sbjct: 468 PAHARDFHINLFQVLPWLKEKLQ 490
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 203 bits (517), Expect = 2e-59
Identities = 81/261 (31%), Positives = 119/261 (45%), Gaps = 24/261 (9%)
Query: 97 CGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAA 156
V R+VGG + WPW ++ + CGG LI+ +VLTAA
Sbjct: 551 PQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMH--------FCGGTLISPEWVLTAA 602
Query: 157 HCVSPDTTGEYEPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLRE 215
HC+ + + Y V +G+ + IE+ R + DIAL +L
Sbjct: 603 HCL--EKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTR------KDIALLKLSS 654
Query: 216 DAPLSDLIQPICLPYDTNLRSELFERKTP-FVAGWGSTVFRGPLSPKLRHVQISVVDNPK 274
A ++D + P CLP + + +T F+ GWG T + L+ Q+ V++N
Sbjct: 655 PAVITDKVIPACLPS----PNYVVADRTECFITGWGETQ-GTFGAGLLKEAQLPVIENKV 709
Query: 275 CRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEV 334
C + + LCAG L+GG DSC GDSGGPL+ KY + GV S+G CA
Sbjct: 710 CNRYEF-LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARP 768
Query: 335 GFPGVYTRVTNYIQWIADNIS 355
PGVY RV+ ++ WI +
Sbjct: 769 NKPGVYVRVSRFVTWIEGVMR 789
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 191 bits (487), Expect = 3e-55
Identities = 59/304 (19%), Positives = 101/304 (33%), Gaps = 63/304 (20%)
Query: 93 DNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYV 152
+ CG+ ++ + PW A I K C GA++++ +V
Sbjct: 449 SLSLCGM-------VWEHRKGTDYHKQPWQAKI-----SVIRPSKGHESCMGAVVSEYFV 496
Query: 153 LTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKL------- 205
LTAAHC + V VG +EIE + H Y K
Sbjct: 497 LTAAHCF--TVDDKEHSIKVSVGGEK-------RDLEIEVVLFHPNYNINGKKEAGIPEF 547
Query: 206 --NDIALFRLREDAPLSDLIQPICLP-YDTNLRSELFERKTP-FVAGWGST-------VF 254
D+AL +L+ I+PICLP + R+ T +F
Sbjct: 548 YDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALF 607
Query: 255 RGPLSPKLRHVQISVVDNPKC------------RQIFSNYGATINENILCAGVLSG--GK 300
KL ++ + + K + + LC G +S
Sbjct: 608 VSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADP 667
Query: 301 DSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCA----------EVGFPGVYTRVTNYIQWI 350
++C GDSGGPL+ +++ +GV+S+G + + + W+
Sbjct: 668 NTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWL 727
Query: 351 ADNI 354
+ +
Sbjct: 728 KEKL 731
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 149 bits (380), Expect = 8e-45
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 16/154 (10%)
Query: 206 NDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGST---VFRGPLSPKL 262
+D+ L RL+ A ++D ++ + LP E T +GWGS ++
Sbjct: 8 HDLMLLRLQSPAKITDAVKVLELP-----TQEPELGSTCEASGWGSIEPGPDDFEFPDEI 62
Query: 263 RHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYII 322
+ VQ++++ N C + + E++LCAG L GGKD+C GDSGGPL+
Sbjct: 63 QCVQLTLLQNTFCA---DAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLIC----NGMWQ 115
Query: 323 GVVSYGK-KCAEVGFPGVYTRVTNYIQWIADNIS 355
G+ S+G C P +YT++ Y+ WI D I+
Sbjct: 116 GITSWGHTPCGSANKPSIYTKLIFYLDWIDDTIT 149
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 129 bits (327), Expect = 3e-37
Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 20/147 (13%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
IV G + G WPW ++ + G CGG+LI + +V+TAAHC +
Sbjct: 1 IVNGEEAVPGSWPWQVSL------QDKTGFH--FCGGSLINENWVVTAAHCGVTTS---- 48
Query: 168 EPYIVHVGSIDLEDTSSG-VSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPI 226
+V G D +S ++I + + +Y S NDI L +L A S + +
Sbjct: 49 --DVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAV 106
Query: 227 CLPYDTNLRSELFERKTP-FVAGWGST 252
CLP S+ F T GWG T
Sbjct: 107 CLPS----ASDDFAAGTTCVTTGWGLT 129
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 125 bits (317), Expect = 4e-36
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 256 GPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPL 315
+L+ + ++ N C++ +G I + ++CAG + G SC GDSGGPL+
Sbjct: 1 ANTPDRLQQASLPLLSNTNCKKY---WGTKIKDAMICAG--ASGVSSCMGDSGGPLVCKK 55
Query: 316 DTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWIADNIS 355
+ + ++G+VS+G PGVY RVT + W+ ++
Sbjct: 56 NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLA 95
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 86.6 bits (214), Expect = 4e-20
Identities = 37/240 (15%), Positives = 72/240 (30%), Gaps = 41/240 (17%)
Query: 117 GQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGS 176
P+ + I G C G LI +LT HCV + Y
Sbjct: 15 RVAPYNS-----IAYITFGGS---SCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPG 66
Query: 177 IDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRS 236
++ +G + E + + D A+ + + + + + TNL
Sbjct: 67 MNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDT--NIGNTVGYRSIRQVTNLTG 124
Query: 237 ELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVL 296
T ++G+ D + S + + + +
Sbjct: 125 T-----TIKISGYPG-------------------DKMRSTGKVSQWEMSGSVTREDTNLA 160
Query: 297 SGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTN-YIQWIADNIS 355
D+ G+SG + LD I+GV + G G + T ++++I +
Sbjct: 161 YYTIDTFSGNSGSAM---LDQNQQIVGVHNAGYSN---GTINGGPKATAAFVEFINYAKA 214
>2ikd_A Prophenoloxidase activating proteinase-2; beta-sheet, double
helix, hydrolase; NMR {Manduca sexta}
Length = 66
Score = 77.3 bits (190), Expect = 2e-18
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 10 CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCCP 63
C+ P N+ GTC S+ QC I++ + + ++++ S CG +G+ PKVCCP
Sbjct: 13 CTLPNNDKGTCKSLLQCDVASKIISKKPRTAQDEKFLRESACGFDGQTPKVCCP 66
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 76.4 bits (189), Expect = 6e-18
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 17/93 (18%)
Query: 108 IVGGTPSERGQWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEY 167
I+GG E+ PW AI + CGG L+ ++VLTAAHC + +
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSFQ---------CGGVLVNPKWVLTAAHCKNDN----- 46
Query: 168 EPYIVHVGSIDL-EDTSSGVSIEIERPIIHEQY 199
Y V +G +L E+ ++ + H +
Sbjct: 47 --YEVWLGRHNLFENENTAQFFGVTADFPHPGF 77
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 68.2 bits (166), Expect = 2e-13
Identities = 33/214 (15%), Positives = 60/214 (28%), Gaps = 33/214 (15%)
Query: 119 WPWMAAIGFKIRRRRANGKPEWMCGGALIT---KRYVLTAAHCVSPDTTGEYEPYIVHVG 175
P + + F + +++C ++ + V TA HC+ G++ V
Sbjct: 6 SPHIGKVFFS------TNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAP 59
Query: 176 SIDLEDTSSGVSIEIERPIIHEQYT-SARKLNDIALFRLREDAPLSDLIQPICLPYDTNL 234
+ D ++ GV E + ++ +D A L
Sbjct: 60 AYDYGESEHGV-WAAEELVTSAEWANRGDFEHDYAFAVLETKGG---------------- 102
Query: 235 RSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAG 294
V F P +++ S +G T + + +
Sbjct: 103 -----TTVQQQVGTASPIAFNQPRGQYYSAYGYPAAAPFNGQELHSCHG-TATNDPMGSS 156
Query: 295 VLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYG 328
+ GG SGGP T SYG
Sbjct: 157 TQGIPCNMTGGSSGGPWFLGNGTGGAQNSTNSYG 190
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 51.2 bits (122), Expect = 1e-07
Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 39/231 (16%)
Query: 118 QWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSI 177
+ A + + I+ G ++ G ++ K +LT H V + +I
Sbjct: 16 NGHY-APVTY-IQVEAPTG--TFIASGVVVGKDTLLTNKHVVDATHGDPHA-LKAFPSAI 70
Query: 178 DLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSE 237
+ ++ +G EQ T D+A+ + + + + +
Sbjct: 71 NQDNYPNGGFTA-------EQITKYSGEGDLAIVKFSPNEQNKHIGEVV----------- 112
Query: 238 LFERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLS 297
P + I+V P + + + + + L +
Sbjct: 113 -----KPATMSNNAETQVN--------QNITVTGYPGDKPVATMWESKGKITYLKGEAMQ 159
Query: 298 GGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQ 348
+ GG+SG P+ + K +IG+ G G + V N+++
Sbjct: 160 YDLSTTGGNSGSPV---FNEKNEVIGIHWGGVPNEFNGAVFINENVRNFLK 207
>2ike_A Prophenoloxidase activating proteinase-2; beta-sheet, double
helix, hydrolase; NMR {Manduca sexta}
Length = 54
Score = 45.5 bits (107), Expect = 5e-07
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 10 CSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQYVKNSHCGLEGRLPKVCC 62
C TP N+ G C++I++C +L +I + Y+KNS C VCC
Sbjct: 3 CLTPDNKPGKCVNIKKCTHLAEIEEDP-IGEDETTYLKNSVCA-GPEDNSVCC 53
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 46.7 bits (110), Expect = 5e-06
Identities = 17/122 (13%), Positives = 44/122 (36%), Gaps = 15/122 (12%)
Query: 118 QWPWMAAIGFKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSI 177
+ A + I+ G ++ G ++ K +LT H V + +I
Sbjct: 16 NGHY-APVT-YIQVEAPTG--TFIASGVVVGKDTLLTNKHVVDATHGDPHA-LKAFPSAI 70
Query: 178 DLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLRED---APLSDLIQPICLPYDTNL 234
+ ++ +G EQ T D+A+ + + + ++++P + +
Sbjct: 71 NQDNYPNGG-------FTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAET 123
Query: 235 RS 236
++
Sbjct: 124 QT 125
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 40.4 bits (93), Expect = 5e-04
Identities = 39/223 (17%), Positives = 62/223 (27%), Gaps = 43/223 (19%)
Query: 140 WMCGGALIT------KRYVLTAAHCVSPDTTGEYEPYIV-------HVGSIDLEDTSSGV 186
C G+L+ K Y LTA HC T +V + + + +
Sbjct: 34 LACTGSLVNNTANDRKMYFLTAHHCGM-GTASTAASIVVYWNYQNSTCRAPNTPASGANG 92
Query: 187 SIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFV 246
+ + + +D L L A + F
Sbjct: 93 DGSMSQTQSGSTVKATYATSDFTLLELNNAANPA---------------------FNLFW 131
Query: 247 AGWGSTVFRGPLSPKLRH--VQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCG 304
AGW P + + H V + N F +G L G +
Sbjct: 132 AGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTEP 191
Query: 305 GDSGGPLMYPLDTKYYIIGVVSYGK-KCAEVG--FPGVYTRVT 344
G SG P+ + ++G + G C+ G Y RV
Sbjct: 192 GSSGSPIY---SPEKRVLGQLHGGPSSCSATGTNRSDQYGRVF 231
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.004
Identities = 42/234 (17%), Positives = 75/234 (32%), Gaps = 80/234 (34%)
Query: 150 RYVLTAAHCVSPDTTGEYEP------------YI----VH--VGSIDLEDTSSGVSIEIE 191
+++ + V P G+++ Y+ +H + E+ + ++
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT---TLVKT 119
Query: 192 RPIIHEQYTSARKLNDI--------ALFR--LREDAPLSDLI---QPICLPYDTNLRSEL 238
+ +I + Y +AR + ALFR +A L I Q Y LR +L
Sbjct: 120 KELI-KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV-AIFGGQGNTDDYFEELR-DL 176
Query: 239 FERKTPFVAGWGSTVFRGPLSPKLRHVQISVVDNPKCRQIFS----------NYGATINE 288
++ V LS +R ++F+ N T ++
Sbjct: 177 YQTYHVLVGDLIKFS-AETLSELIR-------TTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 289 NILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVS---YGKKCAEVGF-PG 338
+ L S P+ PL IGV+ Y +GF PG
Sbjct: 229 DYLL---------SI------PISCPL------IGVIQLAHYVVTAKLLGFTPG 261
Score = 31.2 bits (70), Expect = 0.70
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 21/81 (25%)
Query: 169 PYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLREDAPLSDLIQPICL 228
P + GS++ + + P + A +L + F P
Sbjct: 8 PLTLSHGSLE-------HVLLV--P--TASFFIASQLQEQ--FNKILPEPTEGFAA---- 50
Query: 229 PYDTNLRS--ELFERKTPFVA 247
D + EL + +V+
Sbjct: 51 --DDEPTTPAELVGKFLGYVS 69
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 33.0 bits (75), Expect = 0.084
Identities = 33/216 (15%), Positives = 52/216 (24%), Gaps = 67/216 (31%)
Query: 148 TKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLND 207
+ +TA HC + + I ++ ND
Sbjct: 27 ATKGFVTAGHCGTV-----------------------NATARIGGAVVGTFAARVFPGND 63
Query: 208 IALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQI 267
A L L P VA S V +R
Sbjct: 64 RAWVSLTSAQTL-----------------------LPRVANGSSFV-------TVRGSTE 93
Query: 268 SVVDNPKCRQ---------IFSNYGATIN-ENILCAGVLSGGKDSCGGDSGGPLMYPLDT 317
+ V CR + T N G+ G GDSGG +
Sbjct: 94 AAVGAAVCRSGRTTGYQCGTITAKNVTANYAEGAVRGLTQGNACMGRGDSGGSWITSAGQ 153
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYT-RVTNYIQWIAD 352
GV+S G + G+ + ++ + +
Sbjct: 154 ---AQGVMSGGNVQSNGNNCGIPASQRSSLFERLQP 186
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 32.6 bits (74), Expect = 0.15
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 4/106 (3%)
Query: 133 RANGKPEWMCGGALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIER 192
K + G LI K ++T H + D E
Sbjct: 41 TVFVKGSTLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFE 100
Query: 193 PIIHEQYTSARKLNDIALFRLRED---APLSDLIQPICLPYDTNLR 235
++ + L D+A+ +L+ + DLIQP +P ++
Sbjct: 101 AEEIKESPYGQGL-DLAIIKLKPNEKGESAGDLIQPANIPDHIDIA 145
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 31.4 bits (71), Expect = 0.32
Identities = 33/196 (16%), Positives = 46/196 (23%), Gaps = 49/196 (25%)
Query: 150 RYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIA 209
TA HC S T + SG P D+
Sbjct: 28 TGFATAGHCGSTGTRVS---------------SPSGTVAGSYFPG-----------RDMG 61
Query: 210 LFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQISV 269
R+ ++ P A GS+V R + R I
Sbjct: 62 WVRITSADTVT--------PLVNRYNGGTVTVTGSQEAATGSSVCRSGATTGWRCGTIQS 113
Query: 270 VDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGK 329
+ Y + + G GDSGGP + T GV S G
Sbjct: 114 KN------QTVRYAEGTVTGLTRTTACAEG-----GDSGGPWL----TGSQAQGVTSGGT 158
Query: 330 KCAEVGFPGVYTRVTN 345
G + +
Sbjct: 159 GDCRSGGITFFQPINP 174
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 31.0 bits (70), Expect = 0.36
Identities = 27/208 (12%), Positives = 53/208 (25%), Gaps = 64/208 (30%)
Query: 148 TKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLND 207
RY +TA HC + S ++ + ++ ND
Sbjct: 24 GARYFVTAGHCTNISAN---------------------WSASSGGSVVGVREGTSFPTND 62
Query: 208 IALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRGPLSPKLRHVQI 267
+ R + + V + + + +
Sbjct: 63 YGIVRYTDGS-----------------------SPAGTVDLYNGS------TQDISSAAN 93
Query: 268 SVVDNPKCRQ---------IFSNYGATIN-ENILCAGVLSGGKDSCGGDSGGPLMYPLDT 317
+VV + + T+N + ++ S GGDSGG
Sbjct: 94 AVVGQAIKKSGSTTKVTSGTVTAVNVTVNYGDGPVYNMVRTTACSAGGDSGGAHF----A 149
Query: 318 KYYIIGVVSYGKKCAEVGFPGVYTRVTN 345
+G+ S C+ ++ VT
Sbjct: 150 GSVALGIHSGSSGCSGTAGSAIHQPVTE 177
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.47
Identities = 46/277 (16%), Positives = 81/277 (29%), Gaps = 95/277 (34%)
Query: 25 QCRYLY-DILNNERNNPRAVQYVKNSHCG-----LEGRLPKVCCPQHTLTNDQPTTTTRR 78
+ +Y Y DIL+ + +V N C + L K H + + + T R
Sbjct: 13 EHQYQYKDILSVFEDA-----FVDNFDCKDVQDMPKSILSKEEI-DHIIMSKDAVSGTLR 66
Query: 79 PNNRNGAFTKLPSPDNNECGVNAFNSSKRIVGGTPSERGQWPWMAAIGFKIRRRRANGKP 138
F L E V F V R + ++ + I+ +P
Sbjct: 67 ------LFWTLL--SKQEEMVQKF------VEE--VLRINYKFLMS---PIKTE--QRQP 105
Query: 139 EWMCGGALITKRYVLTAAHCVSPDTTG--EYEPYIVHVGSIDLEDTSSGVSIEIERPIIH 196
++T+ Y+ + Y +V R
Sbjct: 106 S------MMTRMYI----EQRDRLYNDNQVFAKY--NV----------------SRL--- 134
Query: 197 EQYTSARKLNDIALFRLREDAPLSDLIQPI---------CLPYDTNLRSELFERKTPFVA 247
+ Y R+ AL LR P +++ I + D S + K F
Sbjct: 135 QPYLKLRQ----ALLELR---PAKNVL--IDGVLGSGKTWVALDV-CLSYKVQCKMDFKI 184
Query: 248 GWGSTVFRGPLSPKLRHVQISVVDNPK--CRQIFSNY 282
W L+ K + +V++ + QI N+
Sbjct: 185 FW--------LNLKNCNSPETVLEMLQKLLYQIDPNW 213
Score = 31.0 bits (69), Expect = 0.73
Identities = 41/230 (17%), Positives = 67/230 (29%), Gaps = 66/230 (28%)
Query: 5 YDDSLCSTPRNEIGTCISIRQCRYLYDILNNERNNPRAVQ-YVKNSHCGLEGRLPKVCCP 63
D + S L+ L VQ +V+ L + P
Sbjct: 51 IDHIIMSKDAVS--------GTLRLFWTL--LSKQEEMVQKFVEEV---LRINYKFLMSP 97
Query: 64 QHTLTNDQPTTTTR-------RPNNRNGAFTKL----PSPDNN-ECGVNAFNSSKRIV-- 109
T QP+ TR R N N F K P + +K ++
Sbjct: 98 IKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 110 --GGTPSERGQWPWMAAIG---FKIRRRRANGKPEWMCGGALITKRYVLTAAHCVSPDTT 164
G+ G+ W+A +K++ + + K W L +C SP+T
Sbjct: 157 GVLGS----GKT-WVALDVCLSYKVQCKM-DFKIFW------------LNLKNCNSPETV 198
Query: 165 GE-----YEPYIVHVGSIDLEDTSSGVSIEIE-------RPIIHEQYTSA 202
E Y + D SS + + I R + + Y +
Sbjct: 199 LEMLQKLL--YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein.,
structural genomics, PSI-2, protein STR initiative;
1.90A {Marinobacter aquaeolei}
Length = 115
Score = 29.9 bits (68), Expect = 0.48
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 117 GQWPWMAAIGFKIRRRRANGKPEWMCGGAL-ITKR 150
G + W+ + +R +G+ E + G I+
Sbjct: 77 GHYVWIRDVVHVVRD--DSGEVEALIGFMFDISLE 109
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E
5sga_E 2sfa_A
Length = 181
Score = 30.6 bits (69), Expect = 0.54
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 281 NYGATINENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVY 340
N + + G++ + GDSGG L +G+ S G G Y
Sbjct: 111 NATVNYGSSGIVYGMIQTNVCAQPGDSGGSLF----AGSTALGLTSGGSGNCRTGGTTFY 166
Query: 341 TRVTN 345
VT
Sbjct: 167 QPVTE 171
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold,
structural genomics, PSI-2; HET: PG5; 1.49A
{Burkholderia thailandensis}
Length = 142
Score = 29.8 bits (68), Expect = 0.65
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 117 GQWPWMAAIGFKIRRRRANGKPEWMCGGAL-ITKR 150
G + W+ + G + + G+P M G + +T R
Sbjct: 93 GDFRWIQSRGQALWN--SAGEPYRMVGWIMDVTDR 125
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate,
allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1
PDB: 2o73_A* 2o74_A*
Length = 174
Score = 29.7 bits (66), Expect = 0.85
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 166 EYE-----PYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSARKLNDIALFRLRE 215
EY+ P+++ + D +S ++ E + ++ I RL
Sbjct: 110 EYKERFGFPFVICARLNNKADIVRQLSERLKNRRTAELECAIEEVKKICSLRLHS 164
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 29.5 bits (66), Expect = 1.3
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 280 SNYGATIN-ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPG 338
+ +++ G++ + GDSGG L+ GV S G G
Sbjct: 109 TALNSSVTYPEGTVRGLIRTTVCAEPGDSGGSLL----AGNQAQGVTSGGSGNCRTGGTT 164
Query: 339 VYTRVTN 345
+ V
Sbjct: 165 FFQPVNP 171
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability,
electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Length = 188
Score = 29.1 bits (65), Expect = 1.4
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 302 SCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNY 346
+ GDSGG + + GV S G G Y V
Sbjct: 138 AEPGDSGGSFI----SGTQAQGVTSGGSGNCRTGGTTFYQEVNPM 178
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 29.0 bits (65), Expect = 1.4
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 280 SNYGATIN--ENILCAGVLSGGKDSCGGDSGGPLMYPLDTKYYIIGVVSYGKKCAEVGFP 337
+ AT+N + G++ + GDSGGPL + IG+ S G G
Sbjct: 112 TALNATVNYGGGDVVYGMIRTNVCAEPGDSGGPLY----SGTRAIGLTSGGSGNCSSGGT 167
Query: 338 GVYTRVTN 345
+ VT
Sbjct: 168 TFFQPVTE 175
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A
{Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Length = 241
Score = 29.2 bits (66), Expect = 1.6
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 313 YPLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYIQWI 350
Y L + Y + V GK GF G+ + WI
Sbjct: 178 YKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWI 215
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 27.9 bits (62), Expect = 4.2
Identities = 33/222 (14%), Positives = 59/222 (26%), Gaps = 56/222 (25%)
Query: 144 GALITKRYVLTAAHCVSPDTTGEYEPYIVHVGSIDLEDTSSGVSIEIERPIIHEQYTSAR 203
G ++ K +LT H G+ H S + I P
Sbjct: 26 GFVVGKNTILTNKHVSKNYKVGDRI--TAHPNSDKGNGGIYSIKKIINYP---------- 73
Query: 204 KLNDIALFRLREDAPLSDLIQPICLPYDTNLRSELFERKTPFVAGWGSTVFRG------- 256
D+++ ++ E A + TPF + + G
Sbjct: 74 GKEDVSVIQVEERAIERGPKGF-----------NFNDNVTPF--KYAAGAKAGERIKVIG 120
Query: 257 ---PLSPKLRHVQISVVDNPKCRQIFSNYGATINENILCAGVLSGGKDSCGGDSGGPLMY 313
P K + + Y A G+SG P+
Sbjct: 121 YPHPYKNKYVLYESTGPVMSVEGSSIV-YSAHTE----------------SGNSGSPV-- 161
Query: 314 PLDTKYYIIGVVSYGKKCAEVGFPGVYTRVTNYI-QWIADNI 354
L++ ++G+ + T I ++IA+NI
Sbjct: 162 -LNSNNELVGIHFASDVKNDDNRNAYGVYFTPEIKKFIAENI 202
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex,
ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1
PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G
2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G
2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Length = 182
Score = 26.7 bits (60), Expect = 8.8
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 192 RPIIHEQYTSARKLNDIALFRLREDAPL 219
+P + T A+K I+ F+LR+ P+
Sbjct: 67 KPAV----TRAKK--SISNFKLRKGMPI 88
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding
PROT; 1.80A {Geobacillus stearothermophilus} SCOP:
d.77.1.1
Length = 179
Score = 26.7 bits (60), Expect = 8.9
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
Query: 192 RPIIHEQYTSARKLNDIALFRLREDAPL 219
RP++ T A+K IA FRLR+ P+
Sbjct: 64 RPVV----TRAKK--SIAGFRLRQGMPI 85
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer
RNA, 23S ribosomal subunit, ribosome recycling factor,
RRF, ribosome; 3.00A {Escherichia coli} PDB: 3oat_F*
3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F
1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F
3izt_G* 3izu_G* 3kcr_F 3orb_F* ...
Length = 177
Score = 26.7 bits (60), Expect = 9.1
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
Query: 192 RPIIHEQYTSARKLNDIALFRLREDAPL 219
+P+I T ARK +A F++R+ P+
Sbjct: 63 KPLI----TKARK--SVAGFKIRQGYPI 84
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Length = 220
Score = 26.9 bits (60), Expect = 9.1
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 192 RPIIHEQYTSARKLNDIALFRLREDAPL 219
RP+ T A+ IA F++RE L
Sbjct: 79 RPVK----TKAKT--SIAGFKVREGMTL 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.436
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,585,425
Number of extensions: 330428
Number of successful extensions: 1217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 130
Length of query: 355
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 260
Effective length of database: 4,049,298
Effective search space: 1052817480
Effective search space used: 1052817480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)