BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2627
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HV6|A Chain A, Crystal Structure Of The Phosphotyrosyl Phosphatase
Activator
pdb|2HV6|B Chain B, Crystal Structure Of The Phosphotyrosyl Phosphatase
Activator
pdb|2HV7|A Chain A, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|B Chain B, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|C Chain C, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|D Chain D, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|E Chain E, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|F Chain F, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|G Chain G, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|H Chain H, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
Length = 323
Score = 289 bits (739), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 183/279 (65%), Gaps = 23/279 (8%)
Query: 1 MNEAVRGKAIDTRLEPSNNVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGE 60
+NE V+GK + S + + +L ++ IDETPP+DQP RFGNKA+ W K+ E
Sbjct: 55 LNEGVKGKKLTFEYRVSEAIEKLVALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDE 114
Query: 61 CVETELQKALPEKFHAAIPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSM 120
E + +P AA+PE++VYLKES GNSTRIDYGTGHE AF FL CL +IG +
Sbjct: 115 EAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRV 174
Query: 121 NDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFAFSSKN 180
+D++A+V ++F RYL+++R+LQ YRMEPAGS GVW LDD+QF+PFIWGSSQL
Sbjct: 175 DDQIAIVFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLI------ 228
Query: 181 AVGPDHVYAIPKRQVLKDSDMKQWENSEAY----------HVKTGHFSEHSNQLWNISAL 230
DH Y P+ V + EN + Y +KTG F+EHSNQLWNISA+
Sbjct: 229 ----DHPYLEPRHFV---DEKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAV 281
Query: 231 PSWSKINQGLLKMYKGEVLAKFPVIQHVLFGSLIKFEPL 269
PSWSK+NQGL++MYK E L KFPVIQH FGSL+ P+
Sbjct: 282 PSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPV 320
>pdb|2IXM|A Chain A, Structure Of Human Ptpa
Length = 303
Score = 289 bits (739), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 183/279 (65%), Gaps = 23/279 (8%)
Query: 1 MNEAVRGKAIDTRLEPSNNVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGE 60
+NE V+GK + S + + +L ++ IDETPP+DQP RFGNKA+ W K+ E
Sbjct: 36 LNEGVKGKKLTFEYRVSEAIEKLLALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDE 95
Query: 61 CVETELQKALPEKFHAAIPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSM 120
E + +P AA+PE++VYLKES GNSTRIDYGTGHE AF FL CL +IG +
Sbjct: 96 EAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRV 155
Query: 121 NDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFAFSSKN 180
+D++A+V ++F RYL+++R+LQ YRMEPAGS GVW LDD+QF+PFIWGSSQL
Sbjct: 156 DDQIAIVFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLI------ 209
Query: 181 AVGPDHVYAIPKRQVLKDSDMKQWENSEAY----------HVKTGHFSEHSNQLWNISAL 230
DH Y P+ V + EN + Y +KTG F+EHSNQLWNISA+
Sbjct: 210 ----DHPYLEPRHFV---DEKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAV 262
Query: 231 PSWSKINQGLLKMYKGEVLAKFPVIQHVLFGSLIKFEPL 269
PSWSK+NQGL++MYK E L KFPVIQH FGSL+ P+
Sbjct: 263 PSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPV 301
>pdb|2G62|A Chain A, Crystal Structure Of Human Ptpa
Length = 325
Score = 288 bits (738), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 142/279 (50%), Positives = 183/279 (65%), Gaps = 23/279 (8%)
Query: 1 MNEAVRGKAIDTRLEPSNNVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGE 60
+NE V+GK + S + + +L ++ IDETPP+DQP RFGNKA+ W K+ E
Sbjct: 57 LNEGVKGKKLTFEYRVSEAIEKLVALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDE 116
Query: 61 CVETELQKALPEKFHAAIPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSM 120
E + +P AA+PE++VYLKES GNSTRIDYGTGHE AF FL CL +IG +
Sbjct: 117 EAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRV 176
Query: 121 NDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFAFSSKN 180
+D++A+V ++F RYL+++R+LQ YRMEPAGS GVW LDD+QF+PFIWGSSQL
Sbjct: 177 DDQIAIVFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLI------ 230
Query: 181 AVGPDHVYAIPKRQVLKDSDMKQWENSEAY----------HVKTGHFSEHSNQLWNISAL 230
DH Y P+ V + EN + Y +KTG F+EHSNQLWNISA+
Sbjct: 231 ----DHPYLEPRHFV---DEKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAV 283
Query: 231 PSWSKINQGLLKMYKGEVLAKFPVIQHVLFGSLIKFEPL 269
PSWSK+NQGL++MYK E L KFPVIQH FGSL+ P+
Sbjct: 284 PSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPV 322
>pdb|2IXP|A Chain A, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1 In Complex With Model Substrate
pdb|2IXP|B Chain B, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1 In Complex With Model Substrate
pdb|2IXP|C Chain C, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1 In Complex With Model Substrate
pdb|2IXP|D Chain D, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1 In Complex With Model Substrate
Length = 323
Score = 194 bits (494), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/254 (42%), Positives = 155/254 (61%), Gaps = 21/254 (8%)
Query: 18 NNVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAA 77
N +M V L H LIDETPP+ P+R+GN A +W +K+ E + LQ+ LP ++H
Sbjct: 68 NGLMGVLDKLAH---LIDETPPLPGPRRYGNLACREWHHKLDERLPQWLQEMLPSEYHEV 124
Query: 78 IPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDL 137
+PE+ YL SFG+STR+DYGTGHE++F + L +G F + R A V +F +Y +
Sbjct: 125 VPELQYYLGNSFGSSTRLDYGTGHELSFMATVAALDMLGMFP-HMRGADVFLLFNKYYTI 183
Query: 138 VRRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFAFSSKNAVGPDHVYAIPKRQVLK 197
+RRL Y +EPAGSHGVW LDD+ + +I GSSQ ++ + P R++L
Sbjct: 184 MRRLILTYTLEPAGSHGVWGLDDHFHLVYILGSSQWQLLDAQAPLQP--------REILD 235
Query: 198 DSDMKQWENSEAY--------HVKTGHFSEHSNQLWNIS-ALPSWSKINQGLLKMYKGEV 248
S +++++++ Y VK G F EHS L++I+ +P WSK+ +GLLKMY EV
Sbjct: 236 KSLVREYKDTNFYCQGINFINEVKMGPFEEHSPILYDIAVTVPRWSKVCKGLLKMYSVEV 295
Query: 249 LAKFPVIQHVLFGS 262
L KFPV+QH FG+
Sbjct: 296 LKKFPVVQHFWFGT 309
>pdb|2IXO|A Chain A, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1
pdb|2IXO|B Chain B, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1
Length = 323
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 154/254 (60%), Gaps = 21/254 (8%)
Query: 18 NNVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAA 77
N +M V L H LIDETPP+ P+R+GN A +W +K+ E + LQ+ LP ++H
Sbjct: 68 NGLMGVLDKLAH---LIDETPPLPGPRRYGNLACREWHHKLDERLPQWLQEMLPSEYHEV 124
Query: 78 IPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDL 137
+PE+ YL SFG+STR+DYGTGHE++F + L +G F + R A V +F +Y +
Sbjct: 125 VPELQYYLGNSFGSSTRLDYGTGHELSFMATVAALDMLGMFP-HHRGADVFLLFNKYYTI 183
Query: 138 VRRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFAFSSKNAVGPDHVYAIPKRQVLK 197
+RRL Y +EPAGSHGVW LDD+ + +I GSSQ ++ + P R++L
Sbjct: 184 MRRLILTYTLEPAGSHGVWGLDDHFHLVYILGSSQWQLLDAQAPLQP--------REILD 235
Query: 198 DSDMKQWENSEAY--------HVKTGHFSEHSNQLWNIS-ALPSWSKINQGLLKMYKGEV 248
S +++++++ Y VK G F EHS L++I+ +P WSK+ +GLLKMY EV
Sbjct: 236 KSLVREYKDTNFYCQGINFINEVKMGPFEEHSPILYDIAVTVPRWSKVCKGLLKMYSVEV 295
Query: 249 LAKFPVIQHVLFGS 262
KFPV+QH FG+
Sbjct: 296 EKKFPVVQHFWFGT 309
>pdb|2IXN|A Chain A, Crystal Structure Of The Pp2a Phosphatase Activator Ypa2
Ptpa2
pdb|2IXN|B Chain B, Crystal Structure Of The Pp2a Phosphatase Activator Ypa2
Ptpa2
Length = 310
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 146/269 (54%), Gaps = 8/269 (2%)
Query: 1 MNEAVRGKAIDTRLEP-SNNVMSVFQMLEHFNKLIDETPPIDQPQ--RFGNKAFAQWLNK 57
+ E+V+G EP S ++ S+ +L + + P I RFG F + ++
Sbjct: 32 LAESVKGHENSQYKEPISESINSMMNLLSQIKDITQKHPVIKDADSSRFGKVEFRDFYDE 91
Query: 58 IGECVETELQKALPEKFHAAIPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGA 117
+ L+ P + ++S+YL ES+GN RIDYG+GHE+ F L L+ G
Sbjct: 92 VSRNSRKILRSEFPSLTDEQLEQLSIYLDESWGNKRRIDYGSGHELNFMCLLYGLYSYGI 151
Query: 118 FSM-NDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFAF 176
F++ ND +V ++F+ YL ++R L+ +Y +EPAGSHGVW LDDY F+PF++G+ QL
Sbjct: 152 FNLSNDSTNLVLKVFIEYLKIMRILETKYWLEPAGSHGVWGLDDYHFLPFLFGAFQL--- 208
Query: 177 SSKNAVGPDHVYAIPKRQVLKDSDMKQWENSEAYHVK-TGHFSEHSNQLWNISALPSWSK 235
++ + P ++ ++ + + VK + HS L +IS + +WSK
Sbjct: 209 TTHKHLKPISIHNNELVEMFAHRYLYFGCIAFINKVKSSASLRWHSPMLDDISGVKTWSK 268
Query: 236 INQGLLKMYKGEVLAKFPVIQHVLFGSLI 264
+ +G++KMYK EVL+K P++QH F +
Sbjct: 269 VAEGMIKMYKAEVLSKLPIMQHFYFSEFL 297
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 8 KAIDTRLEPSNNVMSVFQMLEHFNKLIDETPPID 41
K DTR+EP N +SV Q++EH DET ID
Sbjct: 174 KRSDTRVEPYNATLSVHQLVEH----SDETFCID 203
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 166 FIWGSSQLFAFSSKNAVGPDHVYAIPKRQVLKDSDMKQWENSEAY 210
++ ++FAF N + P H+ IPK+ + +++ E +EA+
Sbjct: 23 IVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEIT--EENEAF 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,437,163
Number of Sequences: 62578
Number of extensions: 386130
Number of successful extensions: 823
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 13
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)