Query psy2627
Match_columns 309
No_of_seqs 137 out of 349
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 21:02:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03095 PTPA: Phosphotyrosyl 100.0 4E-119 8E-124 853.1 15.6 256 1-270 31-298 (299)
2 cd04087 PTPA Phosphotyrosyl ph 100.0 2E-116 4E-121 821.6 20.3 248 1-261 9-266 (266)
3 KOG2867|consensus 100.0 8E-113 2E-117 815.5 18.9 261 1-274 46-316 (367)
4 COG5057 LAG1 Phosphotyrosyl ph 100.0 1E-103 3E-108 738.4 19.6 260 1-273 41-311 (353)
5 COG3657 Uncharacterized protei 73.9 5.3 0.00011 33.3 4.1 49 47-106 8-66 (100)
6 PRK15322 invasion protein OrgB 44.9 43 0.00092 31.4 5.0 49 53-101 72-148 (210)
7 cd00454 Trunc_globin Truncated 42.3 1.7E+02 0.0038 23.2 7.9 49 50-103 15-64 (116)
8 PRK15410 DgsA anti-repressor M 36.7 87 0.0019 30.2 5.9 103 17-152 144-249 (260)
9 PF02251 PA28_alpha: Proteasom 36.1 37 0.00081 26.0 2.7 32 52-87 10-41 (64)
10 PF03091 CutA1: CutA1 divalent 28.5 43 0.00094 27.6 2.1 33 25-57 61-99 (102)
11 COG3228 Uncharacterized protei 26.4 1.5E+02 0.0032 28.8 5.4 99 19-150 151-252 (266)
12 PRK09646 RNA polymerase sigma 25.4 4.2E+02 0.0092 23.0 8.0 61 49-113 30-90 (194)
13 cd02986 DLP Dim1 family, Dim1- 24.0 29 0.00063 29.4 0.3 27 76-102 55-90 (114)
14 PF08336 P4Ha_N: Prolyl 4-Hydr 22.9 39 0.00084 28.5 0.9 17 135-151 109-125 (134)
15 PRK11027 hypothetical protein; 22.1 93 0.002 26.5 3.0 54 98-161 53-107 (112)
16 PF04915 DltD_N: DltD N-termin 21.9 25 0.00055 26.9 -0.4 19 158-177 25-43 (62)
17 PRK10645 divalent-cation toler 20.7 1.5E+02 0.0032 25.0 3.9 35 23-57 69-109 (112)
18 cd08326 CARD_CASP9 Caspase act 20.5 73 0.0016 25.3 1.9 25 45-69 58-82 (84)
No 1
>PF03095 PTPA: Phosphotyrosyl phosphate activator (PTPA) protein; InterPro: IPR004327 Phosphotyrosyl phosphatase activator (PTPA) proteins stimulate the phosphotyrosyl phosphatase (PTPase) activity of the dimeric form of protein phosphatase 2A (PP2A). PTPase activity in PP2A (in vitro) is relatively low when compared to the better recognised phosphoserine/ threonine protein phosphorylase activity. The specific biological role of PTPA is unknown, Basal expression of PTPA depends on the activity of a ubiquitous transcription factor, Yin Yang 1 (YY1). The tumour suppressor protein p53 can inhibit PTPA expression through an unknown mechanism that negatively controls YY1 [].; GO: 0019211 phosphatase activator activity; PDB: 2HV7_H 2HV6_A 2IXM_A 2G62_A 2IXN_B 2IXO_B 2IXP_B.
Probab=100.00 E-value=3.7e-119 Score=853.10 Aligned_cols=256 Identities=54% Similarity=0.954 Sum_probs=240.7
Q ss_pred CCccccCcccC-CCCCCCHHHHHHHHHHHHHHHhhhhCCCCCC-CCCCCcHHHHHHHHHHHHhHHHHHHHhCCccchhcH
Q psy2627 1 MNEAVRGKAID-TRLEPSNNVMSVFQMLEHFNKLIDETPPIDQ-PQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAI 78 (309)
Q Consensus 1 ln~sv~g~~~~-~~~~~S~~v~~l~~lL~~l~~~i~e~PP~~~-p~RFGN~AFR~W~~~l~e~~~~Ll~~~l~~~~~~~~ 78 (309)
||+||+|++++ +..+.|++|++++++|++|++||+|+||+++ |+||||+|||+|+++|++++++|+++++|+..+.++
T Consensus 31 l~~sV~g~~~~~~~~~~S~~v~~ll~iL~~l~~~i~e~PP~~~~p~RFGN~AfR~w~~~l~~~~~~ll~~~l~~~~~~~~ 110 (299)
T PF03095_consen 31 LNESVKGKKLSTDDYPVSENVQKLLDILDTLEQWIDEIPPVDQGPSRFGNKAFRTWHDKLEEEAPSLLEDILPSSLCGAI 110 (299)
T ss_dssp HHHHHTT-STTTSTSSSSHHHHHHHHHHHHHHHHHHTS---SS-STTSS-THHHHHHHHHHHHHHHHHHHHSTGGGGGGH
T ss_pred HHHHccCCCCCCcccccChHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 58999999999 8999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcccccCChhHHHHHHHHHHHHhhCCcCCCCccchhhhhhHHHHHHHHHHHHhhccccCCCCccccc
Q psy2627 79 PEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSL 158 (309)
Q Consensus 79 ~EL~~Yl~~SFGn~tRIDYGTGHEL~Fl~fL~~L~klg~l~~~d~~a~vl~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWGL 158 (309)
+||..||.+||||+|||||||||||||+||||||+++|+++++|..++||+||.||+++||+||.+|+||||||||||||
T Consensus 111 ~EL~~Yl~~SFGn~tRiDYGTGHEL~Fl~fL~~L~~lg~l~~~d~~a~vL~vF~~Yl~l~R~Lq~~Y~LEPAGSHGVWGL 190 (299)
T PF03095_consen 111 IELSYYLLNSFGNSTRIDYGTGHELSFLAFLCCLFKLGILTEEDYPALVLRVFNRYLELVRRLQSTYRLEPAGSHGVWGL 190 (299)
T ss_dssp HHHHHHHHTSSSBTTTTEEEHHHHHHHHHHHHHHHHTTSSTCHHHHHHHHTHHHHHHHHHHHHHHHCT-EECSCCCCCSS
T ss_pred HHHHHHHHhCcCCCeeeecCcHHHHHHHHHHHHHHHcCCCCccccceeeeeeHHHHHHHHHHHHHheeeccCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhchhccccCCCCCCCCCCCcccCCCceeecCCchHHhhhhhhc----------cccccCccccchhhhccc
Q psy2627 159 DDYQFVPFIWGSSQLFAFSSKNAVGPDHVYAIPKRQVLKDSDMKQWENSEAY----------HVKTGHFSEHSNQLWNIS 228 (309)
Q Consensus 159 DDyqfLPfifGSaQL~~~~~~~~~~~~~~~~~P~~i~~~~~~~~v~~~~~~y----------~vK~Gpf~eHSp~L~dIS 228 (309)
|||||||||||||| +.|+ .++|++|+ |++ +|++|+++| ++|+|||+||||||||||
T Consensus 191 DDy~fLPfi~GsaQ-~~~~----------~~~P~~i~-~~~--~v~~~~~~yly~~~I~fI~~~K~gpf~ehSp~L~~Is 256 (299)
T PF03095_consen 191 DDYQFLPFIFGSAQ-LDHP----------PIKPKSIL-DPD--IVEEYRDDYLYLDCIDFINKVKTGPFREHSPMLWDIS 256 (299)
T ss_dssp SSS-SHHHHHHHHH-TTTS----------SGGGGGGG-SHH--HHHHHTTT-HHHHHHHHHHHHTTS-HHHHSHHHHHHT
T ss_pred ccceeecccccccc-ccCC----------CCChHHhc-CHH--HHHHhcccccHHHHHHHHHHhCCCcHHHHhHHHHhhh
Confidence 99999999999999 8888 89999999 999 999999999 999999999999999999
Q ss_pred CCCChhhhhHHHHHhHHhhhcCccccccccccCcccccCCCC
Q psy2627 229 ALPSWSKINQGLLKMYKGEVLAKFPVIQHVLFGSLIKFEPLQ 270 (309)
Q Consensus 229 ~v~~W~KVn~GliKMY~aEVL~KfpVvQHf~FG~ll~~~~~~ 270 (309)
+|++|+|||+||||||+||||+||||||||+||+||||++++
T Consensus 257 ~v~~W~KV~~GliKMY~~EVL~KfpVvQHf~FG~ll~~~~~~ 298 (299)
T PF03095_consen 257 GVPSWSKVNSGLIKMYKAEVLGKFPVVQHFWFGSLLPFDDVK 298 (299)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTT-HHHHTTSEBBSSSBSSB--
T ss_pred cCCCCcchhhHHHHHHHHHHhhcchhhhhhhhhccccCCcCC
Confidence 999999999999999999999999999999999999999875
No 2
>cd04087 PTPA Phosphotyrosyl phosphatase activator (PTPA) is also known as protein phosphatase 2A (PP2A) phosphatase activator. PTPA is an essential, well conserved protein that stimulates the tyrosyl phosphatase activity of PP2A. It also reactivates the serine/threonine phosphatase activity of an inactive form of PP2A. Together, PTPA and PP2A constitute an ATPase. It has been suggested that PTPA alters the relative specificity of PP2A from phosphoserine/phosphothreonine substrates to phosphotyrosine substrates in an ATP-hydrolysis-dependent manner. Basal expression of PTPA is controlled by the transcription factor Yin Yang1 (YY1). PTPA has been suggested to play a role in the insertion of metals to the PP2A catalytic subunit (PP2Ac) active site, to act as a chaperone, and more recently, to have peptidyl prolyl cis/trans isomerase activity that specifically targets human PP2Ac.
Probab=100.00 E-value=2e-116 Score=821.60 Aligned_cols=248 Identities=56% Similarity=0.990 Sum_probs=245.4
Q ss_pred CCccccCcccCCCCCCCHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCcHHHHHHHHHHHHhHHHHHHHhCCccchhcHHH
Q psy2627 1 MNEAVRGKAIDTRLEPSNNVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAIPE 80 (309)
Q Consensus 1 ln~sv~g~~~~~~~~~S~~v~~l~~lL~~l~~~i~e~PP~~~p~RFGN~AFR~W~~~l~e~~~~Ll~~~l~~~~~~~~~E 80 (309)
||+||+|+++++..+.|++|++|+++|++|++||+|+||+++|+||||+|||+|+++|++++++|+++++|++.+++++|
T Consensus 9 l~~sv~g~~~~~~~~~s~~i~~l~~il~~l~~~i~e~PP~~~~~RfGN~afR~w~~~l~~~~~~ll~~~l~~~~~~~~~E 88 (266)
T cd04087 9 LSESVQGKPLSDEIPVSENIEKLVEILDQLDALIDETPPIDQPSRFGNKAFRTWHDKLEEELPSLLEELLPEELDEAVNE 88 (266)
T ss_pred HHHHhcCCcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHcCchhhHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCcccccCChhHHHHHHHHHHHHhhCCcCCCCccchhhhhhHHHHHHHHHHHHhhccccCCCCcccccCC
Q psy2627 81 ISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDD 160 (309)
Q Consensus 81 L~~Yl~~SFGn~tRIDYGTGHEL~Fl~fL~~L~klg~l~~~d~~a~vl~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWGLDD 160 (309)
|.+||.+||||+|||||||||||||+||||||+|+|+++++|..++||+||.||+++||+||.+|+||||||||||||||
T Consensus 89 L~~Yl~~SFGn~~RiDYGTGHEL~Fl~fL~~L~~lgil~~~d~~~~vL~vF~~Yl~l~R~Lq~~Y~LEPAGSHGvWGLDD 168 (266)
T cd04087 89 LSYYLLESFGNSTRIDYGTGHELNFLAFLCCLFKLGILTEEDYGAIVLRVFNRYLELVRRLQLTYRLEPAGSHGVWGLDD 168 (266)
T ss_pred HHHHHHhccCCCcccccCCchHHHHHHHHHHHHHCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhchhccccCCCCCCCCCCCcccCCCceeecCCchHHhhhhhhc----------cccccCccccchhhhcccCC
Q psy2627 161 YQFVPFIWGSSQLFAFSSKNAVGPDHVYAIPKRQVLKDSDMKQWENSEAY----------HVKTGHFSEHSNQLWNISAL 230 (309)
Q Consensus 161 yqfLPfifGSaQL~~~~~~~~~~~~~~~~~P~~i~~~~~~~~v~~~~~~y----------~vK~Gpf~eHSp~L~dIS~v 230 (309)
|||||||||||||++++ +++|++|+ |++ +|++|+++| ++|+|||+||||||||||+|
T Consensus 169 y~fLPfi~GsaQL~~~~----------~~~P~~i~-~~~--~v~~~~~~ymy~~~I~fI~~vK~gpf~ehSp~L~dIs~v 235 (266)
T cd04087 169 YQFLPFIFGSAQLINHK----------PLKPKSIL-DPE--IVEEYKKDYLYLSCIAFINKVKTGPFAEHSPMLWDISGV 235 (266)
T ss_pred cccchhhhhHHHhccCC----------CCCchhhc-CHH--HHHHhhhcccHHHHHHHHHHcCCCCccccCHHHHHHhcC
Confidence 99999999999999998 89999999 999 999999999 99999999999999999999
Q ss_pred CChhhhhHHHHHhHHhhhcCccccccccccC
Q psy2627 231 PSWSKINQGLLKMYKGEVLAKFPVIQHVLFG 261 (309)
Q Consensus 231 ~~W~KVn~GliKMY~aEVL~KfpVvQHf~FG 261 (309)
++|+|||+||+|||++|||+||||||||+||
T Consensus 236 ~~W~Kv~~Gl~KMY~~EVL~KfpvvQHf~FG 266 (266)
T cd04087 236 PTWSKVNQGLIKMYKAEVLSKFPVVQHFLFG 266 (266)
T ss_pred CChHHHHHHHHHHHHHHHccccccccccccC
Confidence 9999999999999999999999999999998
No 3
>KOG2867|consensus
Probab=100.00 E-value=8e-113 Score=815.53 Aligned_cols=261 Identities=51% Similarity=0.911 Sum_probs=254.8
Q ss_pred CCccccCcccCCCCCCCHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCcHHHHHHHHHHHHhHHHHHHHhCCccchhcHHH
Q psy2627 1 MNEAVRGKAIDTRLEPSNNVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAIPE 80 (309)
Q Consensus 1 ln~sv~g~~~~~~~~~S~~v~~l~~lL~~l~~~i~e~PP~~~p~RFGN~AFR~W~~~l~e~~~~Ll~~~l~~~~~~~~~E 80 (309)
||+||+|.+.+...++|++|+++++||++|++||+|+||+++++||||+|||+|+++|.+++++++++++|+..+++++|
T Consensus 46 ls~~I~g~~~~~~~p~s~~v~~l~~ild~l~~~i~e~P~~~~~~Rfgn~AyR~w~~kl~~~~~~ll~~~~p~~~~~~v~E 125 (367)
T KOG2867|consen 46 LSESIKGHRNTYSFPISEQVKRLMDILDQLDHIIDETPPIDGPQRFGNKAYRTWYEKLYEELPKLLDEALPSLKHEAVNE 125 (367)
T ss_pred HHHHhcCCCccccchhHHHHHHHHHHHHHHHHHHHcCCCCCChhhhcCHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHH
Confidence 58999997777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCcccccCChhHHHHHHHHHHHHhhCCcCCCCccchhhhhhHHHHHHHHHHHHhhccccCCCCcccccCC
Q psy2627 81 ISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDD 160 (309)
Q Consensus 81 L~~Yl~~SFGn~tRIDYGTGHEL~Fl~fL~~L~klg~l~~~d~~a~vl~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWGLDD 160 (309)
|.+||.+||||++||||||||||||+||||||+++|+|..+|..|+||+||.|||++||+||.||+||||||||||||||
T Consensus 126 l~~Yl~~SFGNs~RIDYGtGHEL~Fl~~L~~L~~~Gil~~~D~~a~vl~lF~kYlev~R~Lq~tY~lEPAGShGvwgLDD 205 (367)
T KOG2867|consen 126 LGQYLTESFGNSTRIDYGTGHELNFLFFLCALFKLGILDENDYVALVLRLFNKYLEVMRRLQTTYNLEPAGSHGVWGLDD 205 (367)
T ss_pred HHHHHHhccCCcccccccchHHHHHHHHHHHHHHccCcccchhhHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhchhccccCCCCCCCCCCCcccCCCceeecCCchHHhhhhhhc----------cccccCccccchhhhcccCC
Q psy2627 161 YQFVPFIWGSSQLFAFSSKNAVGPDHVYAIPKRQVLKDSDMKQWENSEAY----------HVKTGHFSEHSNQLWNISAL 230 (309)
Q Consensus 161 yqfLPfifGSaQL~~~~~~~~~~~~~~~~~P~~i~~~~~~~~v~~~~~~y----------~vK~Gpf~eHSp~L~dIS~v 230 (309)
|||||||||||||++++ +++|++|+ |++ +|++|+++| ++|+|||+||||||||||+|
T Consensus 206 ~~FlPfifGsaQL~~~~----------~~~P~~~~-d~~--iv~~~~~~ymyl~cI~fi~k~K~G~f~eHS~~L~~IsaV 272 (367)
T KOG2867|consen 206 FQFLPFIFGSAQLCDHK----------PLKPKSIL-DEK--IVEEYRDDYMYLSCIDFINKVKTGPFAEHSPQLWSISAV 272 (367)
T ss_pred cchhhhhhhHHHHhcCC----------CCChhhhc-cHH--HHHHHHhhhhHHHHHHHHHHhcCCchhhhchHHhhhhcC
Confidence 99999999999999999 99999999 999 999999999 99999999999999999999
Q ss_pred CChhhhhHHHHHhHHhhhcCccccccccccCcccccCCCCCCCC
Q psy2627 231 PSWSKINQGLLKMYKGEVLAKFPVIQHVLFGSLIKFEPLQHDIR 274 (309)
Q Consensus 231 ~~W~KVn~GliKMY~aEVL~KfpVvQHf~FG~ll~~~~~~~~~~ 274 (309)
|+|+|||+||||||++|||+||||||||+||+||||++..+..+
T Consensus 273 p~WsKVn~GlikMY~~eVL~k~pvvQHf~FGel~~~~~~~s~~~ 316 (367)
T KOG2867|consen 273 PTWSKVNRGLIKMYDVEVLSKFPVVQHFIFGELMPFEPSVSGRD 316 (367)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcchHHHHHHhhccccCCCCCCCC
Confidence 99999999999999999999999999999999999999877443
No 4
>COG5057 LAG1 Phosphotyrosyl phosphatase activator [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-103 Score=738.45 Aligned_cols=260 Identities=44% Similarity=0.813 Sum_probs=252.3
Q ss_pred CCccccCcccCC-CCCCCHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCcHHHHHHHHHHHHhHHHHHHHhCCccchhcHH
Q psy2627 1 MNEAVRGKAIDT-RLEPSNNVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAIP 79 (309)
Q Consensus 1 ln~sv~g~~~~~-~~~~S~~v~~l~~lL~~l~~~i~e~PP~~~p~RFGN~AFR~W~~~l~e~~~~Ll~~~l~~~~~~~~~ 79 (309)
|++||+|.+.++ ..+.|..|+.++++|+++..+++|+||+++++||||+|||+||++|.++++++++..+|+..+++++
T Consensus 41 l~~sik~~~~~d~~~~~Sssv~~m~~vL~ri~~I~qe~P~~~~~~RfGN~Afr~~~~kl~~~~~q~~~~~~p~~~~ea~~ 120 (353)
T COG5057 41 LDESIKGCSDSDYHSEQSSSVNHMMNVLDRIKEITQETPPIPGPQRFGNPAFRTWHDKLYDTYPQILQEMLPSEYHEAVP 120 (353)
T ss_pred HHHHhcCCCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcChHHHHHHHHHHhhhHHHHHHhccchhhHHHH
Confidence 578999999986 4567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCcccccCChhHHHHHHHHHHHHhhCCcCCCCccchhhhhhHHHHHHHHHHHHhhccccCCCCcccccC
Q psy2627 80 EISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLD 159 (309)
Q Consensus 80 EL~~Yl~~SFGn~tRIDYGTGHEL~Fl~fL~~L~klg~l~~~d~~a~vl~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWGLD 159 (309)
||..||.+||||++||||||||||||+|||++|+.+|+|..+|+.|+|+.||.+|+++||.||.+|+|||||||||||||
T Consensus 121 el~~Yl~~SfGN~~RiDYGtGHELnFm~~l~~L~~lGif~~~d~~a~V~~ifvkY~eimR~Li~~Y~LEPAGSHGVWGLD 200 (353)
T COG5057 121 ELQYYLRNSFGNSIRIDYGTGHELNFMCYLYALYCLGIFGIADYGALVFTIFVKYLEIMRLLITKYTLEPAGSHGVWGLD 200 (353)
T ss_pred HHHHHHHhccCceeeeccCCccchhHHHHHHHHHHccCCCcccccceehhhHHHHHHHHHHHHHheecccCccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhchhccccCCCCCCCCCCCcccCCCceeecCCchHHhhhhhhc----------cccccCccccchhhhcccC
Q psy2627 160 DYQFVPFIWGSSQLFAFSSKNAVGPDHVYAIPKRQVLKDSDMKQWENSEAY----------HVKTGHFSEHSNQLWNISA 229 (309)
Q Consensus 160 DyqfLPfifGSaQL~~~~~~~~~~~~~~~~~P~~i~~~~~~~~v~~~~~~y----------~vK~Gpf~eHSp~L~dIS~ 229 (309)
||||||||||||||+++. +++|++|+ |++ +|++|+++| ++|.|||+||||||||||+
T Consensus 201 D~~fLpflfGssQl~~~~----------~lkP~~i~-~~e--lv~~~~~s~~Yf~~I~FiN~~K~g~~~~HSPiL~DIs~ 267 (353)
T COG5057 201 DYFFLPFLFGSSQLCNHK----------PLKPREIR-DKE--LVEEYADSNLYFGAINFINEVKLGPFREHSPILYDISA 267 (353)
T ss_pred ccchhhhhcchHHHhccC----------CCCchhhc-CHH--HHHHhhhcceEEEeeehhhhcccCcccccChhhhhhhc
Confidence 999999999999999999 99999999 999 999999998 8999999999999999999
Q ss_pred CCChhhhhHHHHHhHHhhhcCccccccccccCcccccCCCCCCC
Q psy2627 230 LPSWSKINQGLLKMYKGEVLAKFPVIQHVLFGSLIKFEPLQHDI 273 (309)
Q Consensus 230 v~~W~KVn~GliKMY~aEVL~KfpVvQHf~FG~ll~~~~~~~~~ 273 (309)
||+|+|||+||||||++|||+|+||||||+||++|||.|..+..
T Consensus 268 Vk~WSKVn~GmIKMY~~EVL~K~PV~QHF~Fg~~~P~~~~~a~~ 311 (353)
T COG5057 268 VKTWSKVNEGMIKMYDVEVLSKLPVVQHFIFGEFLPKDPGQAPK 311 (353)
T ss_pred cccHHHHHHHHHHHHHHHHhhccchhhhhhhcccccCCCCCCCC
Confidence 99999999999999999999999999999999999999866533
No 5
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.93 E-value=5.3 Score=33.26 Aligned_cols=49 Identities=29% Similarity=0.584 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHHHhH-HHHHHHhCCccchhcHHHHHHHHHhccCC---------CcccccCChhHHHHH
Q psy2627 47 GNKAFAQWLNKIGECV-ETELQKALPEKFHAAIPEISVYLKESFGN---------STRIDYGTGHEMAFC 106 (309)
Q Consensus 47 GN~AFR~W~~~l~e~~-~~Ll~~~l~~~~~~~~~EL~~Yl~~SFGn---------~tRIDYGTGHEL~Fl 106 (309)
|-.-|++|+++|.+.- ..-+..-| ..--..-||+ ..|||||+|+-.-|.
T Consensus 8 ~~d~F~~W~~kLkD~~Aka~I~~Rl-----------~rl~~GN~GD~kpvgeGV~ELRId~GpGyRvY~~ 66 (100)
T COG3657 8 GTDTFSEWLKKLKDRRAKAKIAARL-----------DRLALGNFGDVKPVGEGVSELRIDHGPGYRVYFQ 66 (100)
T ss_pred chHHHHHHHHHHHhHHHHHHHHHHH-----------HHHhcCCCcCccccccchhhheeccCCceEEEEE
Confidence 4457999999998753 22222111 1111122332 369999999987765
No 6
>PRK15322 invasion protein OrgB; Provisional
Probab=44.94 E-value=43 Score=31.44 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=38.5
Q ss_pred HHHHHHHHhHHHHHHHhC----------------------------CccchhcHHHHHHHHHhccCCCcccccCChh
Q psy2627 53 QWLNKIGECVETELQKAL----------------------------PEKFHAAIPEISVYLKESFGNSTRIDYGTGH 101 (309)
Q Consensus 53 ~W~~~l~e~~~~Ll~~~l----------------------------~~~~~~~~~EL~~Yl~~SFGn~tRIDYGTGH 101 (309)
+|.+++++.+..+++..| |....+...+|..||.+.||.+.-|+|+-|.
T Consensus 72 ~l~~~ie~~~r~lls~~Ld~pd~LL~~le~Wl~~l~~~~~pL~l~lP~~ak~~~~~L~~~l~e~w~~~~~i~yhd~~ 148 (210)
T PRK15322 72 KWMEKIQIYARELFSAAVDHPETLLTVLDEWLRDFDKPEGQLFLTLPVNAKKDHQKLMVLLMENWPGTFNLKYHQEQ 148 (210)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccccCceeEecChhhhhhHHHHHHHHHHhcCCCeEEEEcCCC
Confidence 788888887777776655 3344566789999999999988889998765
No 7
>cd00454 Trunc_globin Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is distinct from the three-over-three pattern found in other globins. A subset of these have been demonstrated to form homodimers.
Probab=42.32 E-value=1.7e+02 Score=23.22 Aligned_cols=49 Identities=14% Similarity=0.354 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhHHHHHHHhCCcc-chhcHHHHHHHHHhccCCCcccccCChhHH
Q psy2627 50 AFAQWLNKIGECVETELQKALPEK-FHAAIPEISVYLKESFGNSTRIDYGTGHEM 103 (309)
Q Consensus 50 AFR~W~~~l~e~~~~Ll~~~l~~~-~~~~~~EL~~Yl~~SFGn~tRIDYGTGHEL 103 (309)
....||+++.+. ..+...++.. .......+..||+..+|.+.+. +|+++
T Consensus 15 lv~~FY~~i~~d--p~i~~~F~~~~~~~~~~~~~~fl~~~~gg~~~y---~g~~~ 64 (116)
T cd00454 15 LVDRFYARVAAD--PRLGPIFPADDLEEHRAKLADFLTQVLGGPGLY---RGHPM 64 (116)
T ss_pred HHHHHHHHHhcC--hHHHHhcCCcchHHHHHHHHHHHHHHcCCCCCC---CCCCh
Confidence 345677776654 3466666655 5667778899999999988775 56654
No 8
>PRK15410 DgsA anti-repressor MtfA; Provisional
Probab=36.71 E-value=87 Score=30.19 Aligned_cols=103 Identities=19% Similarity=0.231 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHHHh-hhhCCCCCCCCCCCcHHHHHHHHHHHHhHHHHHHHhCCccchhcHHHHHHHHHhccCCCc-c
Q psy2627 17 SNNVMSVFQMLEHFNKL-IDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAIPEISVYLKESFGNST-R 94 (309)
Q Consensus 17 S~~v~~l~~lL~~l~~~-i~e~PP~~~p~RFGN~AFR~W~~~l~e~~~~Ll~~~l~~~~~~~~~EL~~Yl~~SFGn~t-R 94 (309)
+-.+....=.||.++.- .|-+||. .+..++.|.+-+.+.-+.+.+++-. .|..+ =
T Consensus 144 NVvIHEFAH~LDm~~G~~adG~PpL------~~~~~~~W~~~~~~~~~~l~~~~~~-----------------~~~~~~~ 200 (260)
T PRK15410 144 NLIIHEVAHKLDMRNGDRASGVPFI------PLREVAGWEHDLHAAMNNIQEEIDL-----------------VGENAAS 200 (260)
T ss_pred chhHhHHHhHhhhhcCCCCCCCCCC------CchhHHHHHHHHHHHHHHHHHHHHh-----------------cCCCCCC
Confidence 34566777778888877 8889998 2348999999888777666554310 12222 2
Q ss_pred c-ccCChhHHHHHHHHHHHHhhCCcCCCCccchhhhhhHHHHHHHHHHHHhhccccCCC
Q psy2627 95 I-DYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGS 152 (309)
Q Consensus 95 I-DYGTGHEL~Fl~fL~~L~klg~l~~~d~~a~vl~vF~~Yl~lvR~Lq~~Y~LEPAGS 152 (309)
| .||.=++--|+|-++=-+ |.. =-.+-.+|=+|-+.|+..|++.||++
T Consensus 201 id~YaatnpaEFFAVasE~F----FE~------P~~l~~~~P~LY~~L~~~yrqDP~~~ 249 (260)
T PRK15410 201 IDAYAASDPAECFAVLSEYF----FSA------PELFAPRFPALYQRFCQFYRQDPLQR 249 (260)
T ss_pred CCccccCCchhhheeehhhh----hhC------HHHHHHhCHHHHHHHHHHhCCChhHh
Confidence 3 489999999987654322 111 12234556688899999999999965
No 9
>PF02251 PA28_alpha: Proteasome activator pa28 alpha subunit; InterPro: IPR003185 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the alpha subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_K.
Probab=36.07 E-value=37 Score=25.96 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=27.3
Q ss_pred HHHHHHHHHhHHHHHHHhCCccchhcHHHHHHHHHh
Q psy2627 52 AQWLNKIGECVETELQKALPEKFHAAIPEISVYLKE 87 (309)
Q Consensus 52 R~W~~~l~e~~~~Ll~~~l~~~~~~~~~EL~~Yl~~ 87 (309)
..|.+++..+|+.|+...+|.. +.||...|.+
T Consensus 10 ~~fr~~l~~eAE~Lv~~~fP~K----I~eLd~lLk~ 41 (64)
T PF02251_consen 10 DEFRQSLTKEAENLVSNFFPQK----IVELDELLKS 41 (64)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHH----HHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhCcHH----HHHHHHHhcC
Confidence 4688999999999999998865 6788888877
No 10
>PF03091 CutA1: CutA1 divalent ion tolerance protein; InterPro: IPR004323 The CutA family of proteins which exhibit ion tolerance are found in a large variety of species []. In E.Coli, two operons on the cutA locus contain genes that encode three proteins, CutA1, CutA2 and CutA3. CutA1 proteins are found in the cytoplasm while CutA2 (50kDa) and CutA3 (24kDa) are located in the inner membrane. Although the role of E. Coli CutA1 is not clear, studies on E. coli cutA locus describe some mutations that lead to an increase in copper sensitivity, thus suggesting a role in ion tolerance []. To date, the structure of CutA proteins from several species have been solved [, ]. The crystal structures of the E.Coli and rat CutA1 proteins show both these proteins to be trimeric in the crystal as well as in solution[].Trimerisation seems to supported by the formation of beta sheets between the subunit. This trimeric structure suggests the protein may be involved in signal transduction due to architectural similarities with PII signal transducer proteins []. Recent studies propose that mammalian CutA1 in the neuronal cell membrane acts as an anchor for acetylcholinesterase (AChE)1 [].; GO: 0010038 response to metal ion; PDB: 1O5J_A 1KR4_A 1VHF_A 3GSD_H 1OSC_A 3OPK_A 4E98_C 1V9B_F 1UKU_A 2E66_C ....
Probab=28.51 E-value=43 Score=27.59 Aligned_cols=33 Identities=27% Similarity=0.647 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhhCCCCCCCC------CCCcHHHHHHHHH
Q psy2627 25 QMLEHFNKLIDETPPIDQPQ------RFGNKAFAQWLNK 57 (309)
Q Consensus 25 ~lL~~l~~~i~e~PP~~~p~------RFGN~AFR~W~~~ 57 (309)
+.++.|.++|.+..|-+.|. =.||.+|.+|...
T Consensus 61 ~~~~~l~~~i~~~HpYe~PeIi~~~i~~~~~~Yl~Wi~~ 99 (102)
T PF03091_consen 61 SRFDELEERIRELHPYEVPEIIALPIDKGNPAYLEWINE 99 (102)
T ss_dssp GGHHHHHHHHHHHSSSSS--EEEEEESEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEEccccCHHHHHHHHH
Confidence 45788889999988888775 5699999999764
No 11
>COG3228 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.40 E-value=1.5e+02 Score=28.78 Aligned_cols=99 Identities=22% Similarity=0.301 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCCCCCCCcHHHHHHHHHHHHhHHHH--HHHhCCccchhcHHHHHHHHHhccCCCcccc
Q psy2627 19 NVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETE--LQKALPEKFHAAIPEISVYLKESFGNSTRID 96 (309)
Q Consensus 19 ~v~~l~~lL~~l~~~i~e~PP~~~p~RFGN~AFR~W~~~l~e~~~~L--l~~~l~~~~~~~~~EL~~Yl~~SFGn~tRID 96 (309)
.+..+--=||..+-=.+-+||..-.+ -+-.|-+.|...-+++ ..+..++. .|-||
T Consensus 151 ViHEfAHkLDm~nG~anGvP~l~~r~-----d~~~W~~~l~aayd~~q~~~d~~~~~------------------~t~iD 207 (266)
T COG3228 151 VIHEFAHKLDMRNGDANGVPFLPLRS-----DVAGWEHDLHAAYDNIQEEIDLVGER------------------ATSID 207 (266)
T ss_pred hHhHHhhhhhcccCCcCCCCcCcccc-----hHHHHHHHHHHHHHHHHHHHhhcccc------------------ccccc
Confidence 34444455666666677788886544 4568999998887743 33444432 56676
Q ss_pred -cCChhHHHHHHHHHHHHhhCCcCCCCccchhhhhhHHHHHHHHHHHHhhccccC
Q psy2627 97 -YGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLVRRLQCEYRMEPA 150 (309)
Q Consensus 97 -YGTGHEL~Fl~fL~~L~klg~l~~~d~~a~vl~vF~~Yl~lvR~Lq~~Y~LEPA 150 (309)
||--|=.-|+|-+.--+ |+.- =.+-.+|=.|-++||+.|+.+|+
T Consensus 208 ~Y~AtnPAEfFAV~SE~F----F~aP------~~l~~~~palyq~lq~fY~qdPl 252 (266)
T COG3228 208 AYAATNPAEFFAVLSEYF----FSAP------ELLQERFPALYQRLQKFYQQDPL 252 (266)
T ss_pred ccccCChHHHHHHHHHHH----hcCH------HHHhHhhHHHHHHHHHHHhhhHH
Confidence 89888888887664332 2211 12346777888999999999996
No 12
>PRK09646 RNA polymerase sigma factor SigK; Reviewed
Probab=25.41 E-value=4.2e+02 Score=22.96 Aligned_cols=61 Identities=20% Similarity=0.246 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHhCCccchhcHHHHHHHHHhccCCCcccccCChhHHHHHHHHHHHH
Q psy2627 49 KAFAQWLNKIGECVETELQKALPEKFHAAIPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLF 113 (309)
Q Consensus 49 ~AFR~W~~~l~e~~~~Ll~~~l~~~~~~~~~EL~~Yl~~SFGn~tRIDYGTGHEL~Fl~fL~~L~ 113 (309)
.||..++++....+..++...+... ..+-.-+..=|..-|-+.-++|...| +|.+||+.+.
T Consensus 30 ~a~~~l~~~y~~~l~~~~~~~~~~~-~dAeDivQe~fi~l~~~~~~~~~~~~---~~~~wl~~ia 90 (194)
T PRK09646 30 DAFAELYDRTSSRVYGLVRRVLRDP-GYSEETTQEVYLEVWRTASRFDPARG---SALAWLLTLA 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHhhhhcCcccc---cHHHHHHHHH
Confidence 4888888888888888887777543 22222233333444455556665444 6788877643
No 13
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=24.01 E-value=29 Score=29.44 Aligned_cols=27 Identities=26% Similarity=0.582 Sum_probs=19.0
Q ss_pred hcHHHHHHHHHhc----c-----CCCcccccCChhH
Q psy2627 76 AAIPEISVYLKES----F-----GNSTRIDYGTGHE 102 (309)
Q Consensus 76 ~~~~EL~~Yl~~S----F-----Gn~tRIDYGTGHE 102 (309)
+.++|+..++.=+ | |...++|||||.-
T Consensus 55 Dev~dva~~y~I~amPtfvffkngkh~~~d~gt~~~ 90 (114)
T cd02986 55 DKVPVYTQYFDISYIPSTIFFFNGQHMKVDYGSPDH 90 (114)
T ss_pred cccHHHHHhcCceeCcEEEEEECCcEEEEecCCCCC
Confidence 3456666666433 2 8899999999963
No 14
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=22.94 E-value=39 Score=28.51 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhccccCC
Q psy2627 135 LDLVRRLQCEYRMEPAG 151 (309)
Q Consensus 135 l~lvR~Lq~~Y~LEPAG 151 (309)
..-+.|||.+|+|.|+-
T Consensus 109 ~~~l~RLQ~~Y~L~~~d 125 (134)
T PF08336_consen 109 AEGLLRLQDTYNLDPSD 125 (134)
T ss_pred HHHHHHHHHHhCCCHHH
Confidence 45678999999999863
No 15
>PRK11027 hypothetical protein; Provisional
Probab=22.09 E-value=93 Score=26.52 Aligned_cols=54 Identities=20% Similarity=0.358 Sum_probs=39.8
Q ss_pred CChhHHHHHHHHHHHHhhCCcCCCCccchhhhhhHHHHHHHHHHHHhhccccCCCCc-ccccCCc
Q psy2627 98 GTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHG-VWSLDDY 161 (309)
Q Consensus 98 GTGHEL~Fl~fL~~L~klg~l~~~d~~a~vl~vF~~Yl~lvR~Lq~~Y~LEPAGSHG-VWGLDDy 161 (309)
.|-.|-.|++.+- .+......+=+++-+|++++|+=-..|+|- |..+ +=+.|||
T Consensus 53 ~t~eE~~Fv~v~~--------g~~~~~s~~Ek~WlKY~~~i~~~kr~~tl~--g~~~~~~~~~d~ 107 (112)
T PRK11027 53 VTEEEKQFVAVCR--------GEREPVTEFEKVWLKYMKRIRRPKRFHTLS--GGKPQVDGVEDY 107 (112)
T ss_pred CCHHHHHHHHHHc--------CCCCCCCHHHHHHHHHHHHhcCCCceEecc--CCCCCCCCcccc
Confidence 4567888888764 233445668899999999999999999994 6555 3457776
No 16
>PF04915 DltD_N: DltD N-terminal region; InterPro: IPR006999 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the N-terminal region of DltD.; PDB: 3BMA_C.
Probab=21.94 E-value=25 Score=26.92 Aligned_cols=19 Identities=53% Similarity=0.974 Sum_probs=12.0
Q ss_pred cCCccchhhhhchhccccCC
Q psy2627 158 LDDYQFVPFIWGSSQLFAFS 177 (309)
Q Consensus 158 LDDyqfLPfifGSaQL~~~~ 177 (309)
|.|-.++|| ||||.|..-+
T Consensus 25 l~~~~yvPf-yGSSEl~r~D 43 (62)
T PF04915_consen 25 LKDPKYVPF-YGSSELSRFD 43 (62)
T ss_dssp HSSS-EEEE-E-SSTTTS--
T ss_pred hcCCCeeee-cCcHHHhccC
Confidence 456778995 8999998877
No 17
>PRK10645 divalent-cation tolerance protein CutA; Provisional
Probab=20.71 E-value=1.5e+02 Score=24.97 Aligned_cols=35 Identities=17% Similarity=0.479 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhhCCCCCCCC------CCCcHHHHHHHHH
Q psy2627 23 VFQMLEHFNKLIDETPPIDQPQ------RFGNKAFAQWLNK 57 (309)
Q Consensus 23 l~~lL~~l~~~i~e~PP~~~p~------RFGN~AFR~W~~~ 57 (309)
.-+.++.|.+.|.+..|-+.|. =.||++|.+|...
T Consensus 69 ~~~~~~~l~~~I~~~HpYevPeIi~~~i~~g~~~Yl~Wi~~ 109 (112)
T PRK10645 69 TVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNA 109 (112)
T ss_pred CHHHHHHHHHHHHHhCCCCCCEEEEEEcccCCHHHHHHHHH
Confidence 4467888999999999988764 4699999999764
No 18
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=20.49 E-value=73 Score=25.34 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=19.0
Q ss_pred CCCcHHHHHHHHHHHHhHHHHHHHh
Q psy2627 45 RFGNKAFAQWLNKIGECVETELQKA 69 (309)
Q Consensus 45 RFGN~AFR~W~~~l~e~~~~Ll~~~ 69 (309)
+=|+.||..|.+-|++....-|.++
T Consensus 58 ~RG~~AF~~F~~aL~~~~~~~LA~l 82 (84)
T cd08326 58 TRGKQAFPAFLSALRETGQTDLAEL 82 (84)
T ss_pred hcCHHHHHHHHHHHHhcCchHHHHH
Confidence 4599999999999988665555444
Done!