Query psy2627
Match_columns 309
No_of_seqs 137 out of 349
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 21:02:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ixm_A Serine/threonine-protei 100.0 3E-121 1E-125 866.0 18.5 258 1-271 36-303 (303)
2 2ixn_A Serine/threonine-protei 100.0 4E-119 2E-123 853.4 16.3 259 1-272 32-305 (310)
3 2ixo_A Serine/threonine-protei 100.0 2E-116 7E-121 838.7 17.1 252 1-266 45-313 (323)
4 2qrw_A Hemoglobin-like protein 58.0 36 0.0012 26.9 7.4 84 51-140 19-121 (128)
5 2bkm_A Truncated hemoglobin fr 31.0 68 0.0023 25.2 4.9 60 53-114 22-94 (128)
6 3qkc_B Geranyl diphosphate syn 27.2 1.5E+02 0.0052 26.8 7.1 99 50-159 5-106 (273)
7 3kra_B Geranyl diphosphate syn 26.8 96 0.0033 28.2 5.8 97 52-159 2-103 (274)
8 2rsm_A Probable peptide chain 26.2 20 0.00068 29.5 0.9 10 150-159 3-12 (115)
9 3ts9_A Interferon-induced heli 25.0 1.6E+02 0.0054 24.8 6.2 43 17-63 8-50 (138)
10 1ux8_A YJBI protein; oxygen st 23.6 66 0.0023 25.6 3.6 60 52-113 22-94 (132)
11 1avo_A 11S regulator; proteaso 22.8 57 0.0019 23.5 2.7 33 51-87 11-43 (60)
12 2paq_A 5'-deoxynucleotidase YF 22.1 89 0.003 27.1 4.4 63 16-90 127-189 (201)
No 1
>2ixm_A Serine/threonine-protein phosphatase 2A regulatory subunit B'; 2 PTPA, ppiase, hydrolase activator; 1.5A {Homo sapiens} SCOP: a.268.1.1 PDB: 2hv6_A 2hv7_A* 2g62_A
Probab=100.00 E-value=3.3e-121 Score=866.03 Aligned_cols=258 Identities=54% Similarity=0.999 Sum_probs=254.3
Q ss_pred CCccccCcccCCCCCCCHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCcHHHHHHHHHHHHhHHHHHHHhCCccchhcHHH
Q psy2627 1 MNEAVRGKAIDTRLEPSNNVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAIPE 80 (309)
Q Consensus 1 ln~sv~g~~~~~~~~~S~~v~~l~~lL~~l~~~i~e~PP~~~p~RFGN~AFR~W~~~l~e~~~~Ll~~~l~~~~~~~~~E 80 (309)
||+||+|+++++..+.|++|++|+++|++|++||+|+||+++|+||||+|||+|+++|++++++|+++++|++..++++|
T Consensus 36 l~~sv~g~~~~~~~~~s~~v~~l~~iL~~l~~~i~e~PP~~~p~RFGN~AfR~w~~~l~~~~~~ll~~~l~~~~~~~~~E 115 (303)
T 2ixm_A 36 LNEGVKGKKLTFEYRVSEAIEKLLALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPE 115 (303)
T ss_dssp HHHHTTTCCTTCCCCCCHHHHHHHHHHHHHHHHHHTSCCCCCSCSSSCTHHHHHHHHHHHHHHHHHHTTSCGGGGGGHHH
T ss_pred HHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHcChhhHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCcccccCChhHHHHHHHHHHHHhhCCcCCCCccchhhhhhHHHHHHHHHHHHhhccccCCCCcccccCC
Q psy2627 81 ISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDD 160 (309)
Q Consensus 81 L~~Yl~~SFGn~tRIDYGTGHEL~Fl~fL~~L~klg~l~~~d~~a~vl~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWGLDD 160 (309)
|.+||.+||||+|||||||||||||+||||||+|+|+|+++|..++||+||.|||++|||||.+|+||||||||||||||
T Consensus 116 L~~Yl~~SFGn~tRiDYGTGHEL~Fl~fL~cL~klgil~~~d~~a~vL~vF~~Yl~l~R~Lq~tY~LEPAGSHGVWgLDD 195 (303)
T 2ixm_A 116 VAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDD 195 (303)
T ss_dssp HHHHHHTSSCBTTTTEECHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHTHHHHHHHHHHHHHHHTTCEESSCCGGGCSSS
T ss_pred HHHHHHhCcCCCccCccCcHHHHHHHHHHHHHHHcCCCccchhhhhHHHHHHHHHHHHHHHHHhcccccCCCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhchhccccCCCCCCCCCCCcccCCCceeecCCchHHhhhhhhc----------cccccCccccchhhhcccCC
Q psy2627 161 YQFVPFIWGSSQLFAFSSKNAVGPDHVYAIPKRQVLKDSDMKQWENSEAY----------HVKTGHFSEHSNQLWNISAL 230 (309)
Q Consensus 161 yqfLPfifGSaQL~~~~~~~~~~~~~~~~~P~~i~~~~~~~~v~~~~~~y----------~vK~Gpf~eHSp~L~dIS~v 230 (309)
|||||||||||||++|+ +++|++|+ |++ +|++|+++| ++|+|||+||||||||||+|
T Consensus 196 y~FLPfifGsaQL~~~~----------~~~P~~i~-~~~--ive~~~~~ymy~~~I~fI~~vK~gpf~eHSp~L~dIS~v 262 (303)
T 2ixm_A 196 FQFLPFIWGSSQLIDHP----------YLEPRHFV-DEK--AVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAV 262 (303)
T ss_dssp SCCHHHHHHHHHTTTCS----------SCCGGGGG-CHH--HHHHHGGGCHHHHHHHHHHHHCCSCHHHHCHHHHHHTTS
T ss_pred hhhhhHHHhHHHHccCC----------CCCchhhc-CHH--HHHHhcccCcHHHHHHHHHHcCCCcHHhhCHHHHhhhcC
Confidence 99999999999999999 99999999 999 999999999 89999999999999999999
Q ss_pred CChhhhhHHHHHhHHhhhcCccccccccccCcccccCCCCC
Q psy2627 231 PSWSKINQGLLKMYKGEVLAKFPVIQHVLFGSLIKFEPLQH 271 (309)
Q Consensus 231 ~~W~KVn~GliKMY~aEVL~KfpVvQHf~FG~ll~~~~~~~ 271 (309)
++|+|||+||+|||+||||+||||||||+||+||||+++++
T Consensus 263 ~~W~KV~~GmiKMY~aEVL~KfpVvQHf~FGsll~~~~~~~ 303 (303)
T 2ixm_A 263 PSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPVTS 303 (303)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCHHHHTTCEECSSSCSSBCCC
T ss_pred CChHHHHHHHHHHHHHHHhccccchhhhhhhcccCCCCCCC
Confidence 99999999999999999999999999999999999998764
No 2
>2ixn_A Serine/threonine-protein phosphatase 2A activator; PP2A phosphatase activator prolyl isomerase PTPA, isomerase; 2.8A {Saccharomyces cerevisiae} SCOP: a.268.1.1
Probab=100.00 E-value=4.4e-119 Score=853.37 Aligned_cols=259 Identities=34% Similarity=0.658 Sum_probs=245.9
Q ss_pred CCccccCcccCC-CCCCCHHHHHHHHHHHHHHHhhhhCCCC-CC-CCCCCcHHHHHHHHHHHHhHHHHHHHhCCccchhc
Q psy2627 1 MNEAVRGKAIDT-RLEPSNNVMSVFQMLEHFNKLIDETPPI-DQ-PQRFGNKAFAQWLNKIGECVETELQKALPEKFHAA 77 (309)
Q Consensus 1 ln~sv~g~~~~~-~~~~S~~v~~l~~lL~~l~~~i~e~PP~-~~-p~RFGN~AFR~W~~~l~e~~~~Ll~~~l~~~~~~~ 77 (309)
||+||+|+++++ ..+.|++|++|+++|++|++||+|+||+ ++ |+||||+|||+|+++|++++++|+++++|+..+++
T Consensus 32 l~~sv~g~~~~~~~~~~s~~v~~l~~iL~~l~~~ide~PP~~~~~~~RFGN~AfR~w~~~l~~~~~~ll~~~lp~~~~~~ 111 (310)
T 2ixn_A 32 LAESVKGHENSQYKEPISESINSMMNLLSQIKDITQKHPVIKDADSSRFGKVEFRDFYDEVSRNSRKILRSEFPSLTDEQ 111 (310)
T ss_dssp HHHTTTTCCTTCCCSSCCHHHHHHHHHHHHHHHHHTTCCCCC-----CCCCTHHHHHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred HHHHhcCCCCCccccCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhh
Confidence 589999999998 8999999999999999999999999999 76 99999999999999999999999999999988999
Q ss_pred HHHHHHHHHhccCCCcccccCChhHHHHHHHHHHHHhhCCcC-CCCccchhhhhhHHHHHHHHHHHHhhccccCCCCccc
Q psy2627 78 IPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFS-MNDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVW 156 (309)
Q Consensus 78 ~~EL~~Yl~~SFGn~tRIDYGTGHEL~Fl~fL~~L~klg~l~-~~d~~a~vl~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVW 156 (309)
++||.+||.+||||+|||||||||||||+||||||+|+|+|+ ++|..++||+||.|||++|||||.+|+||||||||||
T Consensus 112 ~~EL~~Yl~~SFGn~tRiDYGTGHEL~Fl~fL~cL~klgil~~~~D~~a~vL~vF~~Yl~l~R~Lq~tY~LEPAGSHGVW 191 (310)
T 2ixn_A 112 LEQLSIYLDESWGNKRRIDYGSGHELNFMCLLYGLYSYGIFNLSNDSTNLVLKVFIEYLKIMRILETKYWLEPAGSHGVW 191 (310)
T ss_dssp HHHHHHHHHTSSCBTTTTEECHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHTCEECCCSCSC
T ss_pred HHHHHHHHHhCcCCCccCccCchHHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHHHHHHHHHHHHcccccCCCCCcc
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred ccCCccchhhhhchhccccCCCCCCCCCCCcccCCCceeecCCchHHhhhhhhc----------cccccC-ccccchhhh
Q psy2627 157 SLDDYQFVPFIWGSSQLFAFSSKNAVGPDHVYAIPKRQVLKDSDMKQWENSEAY----------HVKTGH-FSEHSNQLW 225 (309)
Q Consensus 157 GLDDyqfLPfifGSaQL~~~~~~~~~~~~~~~~~P~~i~~~~~~~~v~~~~~~y----------~vK~Gp-f~eHSp~L~ 225 (309)
|||||||||||||||||++++ +++|++|+ |++ +|++|+++| ++|+|| |+|||||||
T Consensus 192 gLDDy~FLPfifGsaQL~~~~----------~~~P~~i~-~~~--ive~~~~~ymy~~~I~fI~~vK~gp~f~eHSp~L~ 258 (310)
T 2ixn_A 192 GLDDYHFLPFLFGAFQLTTHK----------HLKPISIH-NNE--LVEMFAHRYLYFGCIAFINKVKSSASLRWHSPMLD 258 (310)
T ss_dssp SSSSSCSHHHHHHHHHTTTCS----------SCCGGGGG-CHH--HHHHHTTTCHHHHHHHHHHHHTTTSCHHHHCHHHH
T ss_pred ccchhhhhhHHhhHHHhccCC----------CCCchhhc-CHH--HHHHhcccCcHHHHHHHHHHhcCCccHHHhCHHHH
Confidence 999999999999999999999 99999999 999 999999999 999999 999999999
Q ss_pred cccCCCChhhhhHHHHHhHHhhhcCccccccccccCcccccCCCCCC
Q psy2627 226 NISALPSWSKINQGLLKMYKGEVLAKFPVIQHVLFGSLIKFEPLQHD 272 (309)
Q Consensus 226 dIS~v~~W~KVn~GliKMY~aEVL~KfpVvQHf~FG~ll~~~~~~~~ 272 (309)
|||+|++|+|||+||+|||+||||+||||||||+||+||||++..+.
T Consensus 259 dIS~v~~W~KV~~GmiKMY~aEVL~KfpVvQHf~FGsll~~~~~~~~ 305 (310)
T 2ixn_A 259 DISGVKTWSKVAEGMIKMYKAEVLSKLPIMQHFYFSEFLPCPDGVSH 305 (310)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHTTTCHHHHTTSCCCSSSCC------
T ss_pred hcccCCChHHHHHHHHHHHHHHHhccccccccccccccccCCCcccc
Confidence 99999999999999999999999999999999999999999987663
No 3
>2ixo_A Serine/threonine-protein phosphatase 2A activator 1; isomerase, PP2A phosphatase activator prolyl isomerase PTPA, nuclear protein; 2.6A {Saccharomyces cerevisiae} SCOP: a.268.1.1 PDB: 2ixp_A*
Probab=100.00 E-value=2e-116 Score=838.72 Aligned_cols=252 Identities=40% Similarity=0.671 Sum_probs=235.4
Q ss_pred CCccccCcccCC---CCCCCHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCcHHHHHHHHHHHHhHHHHHHHhCCccchhc
Q psy2627 1 MNEAVRGKAIDT---RLEPSNNVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAA 77 (309)
Q Consensus 1 ln~sv~g~~~~~---~~~~S~~v~~l~~lL~~l~~~i~e~PP~~~p~RFGN~AFR~W~~~l~e~~~~Ll~~~l~~~~~~~ 77 (309)
||+||+|+++++ ..+.|++|++|+++|++|++||+|+||+++|+||||+|||+|+++|++++++|+++++|++...+
T Consensus 45 l~~sv~g~~~~~~~~~~~~s~~v~~l~~iL~~l~~~ide~PP~~~p~RFGN~AfR~w~~~l~~~~~~ll~~~l~~~~~~~ 124 (323)
T 2ixo_A 45 YTTLISHCSDPDPHATASSIAMVNGLMGVLDKLAHLIDETPPLPGPRRYGNLACREWHHKLDERLPQWLQEMLPSEYHEV 124 (323)
T ss_dssp HHHHHTTCSSCCTTCCCCSSHHHHHHHHHHHHHHHTTTTSCCCCC---CCCSHHHHHHHHHHHHHHHHHHHHSCGGGGGG
T ss_pred HHHHhcCCCCCCcccCCCcCHHHHHHHHHHHHHHHHHHhCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHcChhhHHH
Confidence 589999999988 78889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcccccCChhHHHHHHHHHHHHhhCCcCCCCccchhhhhhHHHHHHHHHHHHhhccccCCCCcccc
Q psy2627 78 IPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWS 157 (309)
Q Consensus 78 ~~EL~~Yl~~SFGn~tRIDYGTGHEL~Fl~fL~~L~klg~l~~~d~~a~vl~vF~~Yl~lvR~Lq~~Y~LEPAGSHGVWG 157 (309)
++||..||.+||||+|||||||||||||+||||||+|+|+| ++|..++||+||.|||++|||||.+|+|||||||||||
T Consensus 125 ~~EL~~Yl~~SFGn~tRIDYGTGHEL~Fl~fL~cL~klgil-~~d~~a~vL~vF~~Yl~l~R~Lq~tY~LEPAGSHGVWG 203 (323)
T 2ixo_A 125 VPELQYYLGNSFGSSTRLDYGTGHELSFMATVAALDMLGMF-PHHRGADVFLLFNKYYTIMRRLILTYTLEPAGSHGVWG 203 (323)
T ss_dssp HHHHHHHHHTSSCCTTTCEECHHHHHHHHHHHHHHHHTTCS-TTCCHHHHHHHHHHHHHHHHHHHHHTTCEECC------
T ss_pred HHHHHHHHHhccCCCcccccCcHHHHHHHHHHHHHHHcCCC-cccccchhHHHHHHHHHHHHHHHHHcccccCCCCCccc
Confidence 99999999999999999999999999999999999999999 67888999999999999999999999999999999999
Q ss_pred cCCccchhhhhchhccc---cCCCCCCCCCCCcccCCCceeecCCchHHhhhhhhc----------cccccCccccchhh
Q psy2627 158 LDDYQFVPFIWGSSQLF---AFSSKNAVGPDHVYAIPKRQVLKDSDMKQWENSEAY----------HVKTGHFSEHSNQL 224 (309)
Q Consensus 158 LDDyqfLPfifGSaQL~---~~~~~~~~~~~~~~~~P~~i~~~~~~~~v~~~~~~y----------~vK~Gpf~eHSp~L 224 (309)
||||||||||||||||+ +|+ +++|++|+ |++ +|++|+++| +||+|||+||||||
T Consensus 204 LDDy~FLPfifGsAQL~~l~~~~----------~~~P~~i~-~~~--ive~~~~~ymy~~~I~fI~~vK~gpf~eHSpmL 270 (323)
T 2ixo_A 204 LDDHFHLVYILGSSQWQLLDAQA----------PLQPREIL-DKS--LVREYKDTNFYCQGINFINEVKMGPFEEHSPIL 270 (323)
T ss_dssp CSSSCSHHHHHHHHHTSSSGGGS----------SSCGGGGG-CHH--HHHHHTTTCHHHHHHHHHHHHCCSCHHHHCHHH
T ss_pred ccchhhcchhhhHhhhcccccCC----------CCCchhhc-CHH--HHHHhcccCcHHHHHHHHHHcCCCchhhhCHHH
Confidence 99999999999999965 666 89999999 999 999999999 89999999999999
Q ss_pred hccc-CCCChhhhhHHHHHhHHhhhcCccccccccccCccccc
Q psy2627 225 WNIS-ALPSWSKINQGLLKMYKGEVLAKFPVIQHVLFGSLIKF 266 (309)
Q Consensus 225 ~dIS-~v~~W~KVn~GliKMY~aEVL~KfpVvQHf~FG~ll~~ 266 (309)
|||| +|++|+|||+||+|||+||||+||||||||+||++|++
T Consensus 271 ~dIS~~v~~W~KV~~GmiKMY~aEVL~KfpVvQHf~FGsll~~ 313 (323)
T 2ixo_A 271 YDIAVTVPRWSKVCKGLLKMYSVEVEKKFPVVQHFWFGTGFFP 313 (323)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTTCHHHHTTCCBCSSSSC
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHhccccchhhhhhhcccch
Confidence 9998 89999999999999999999999999999999998774
No 4
>2qrw_A Hemoglobin-like protein HBO; truncated hemoglobin fold, alpha helix, heme, hydroxylation, iron, membrane, metal-binding; HET: HEM; 1.93A {Mycobacterium tuberculosis} PDB: 1ngk_A*
Probab=57.98 E-value=36 Score=26.89 Aligned_cols=84 Identities=17% Similarity=0.374 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhHHHHHHHhCC-ccchhcHHHHHHHHHhccCCCcccc--cCChh-------------HHHHHHHHHHHHh
Q psy2627 51 FAQWLNKIGECVETELQKALP-EKFHAAIPEISVYLKESFGNSTRID--YGTGH-------------EMAFCMFLLCLFR 114 (309)
Q Consensus 51 FR~W~~~l~e~~~~Ll~~~l~-~~~~~~~~EL~~Yl~~SFGn~tRID--YGTGH-------------EL~Fl~fL~~L~k 114 (309)
-..||++|.+. ..+..+++ .+...+...+..+|+..+|.+.+.. | || +-.|-+||-||.+
T Consensus 19 v~~FY~~v~~d--p~l~~~F~~~d~~~~~~~l~~fl~~~~GGp~~Y~~~~--G~p~m~~~H~~~~I~~~~f~~wl~~~~~ 94 (128)
T 2qrw_A 19 VSRFYAQVAED--EVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQR--GHPRLRMRHAPFRISLIERDAFLRCMHT 94 (128)
T ss_dssp HHHHHHHHHHC--HHHHHHSCCSCCHHHHHHHHHHHHHHTTSCCHHHHHH--CSCCHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--HHHHHhccCCCHHHHHHHHHHHHHHHhCCCcccccCc--CChhHHHhhcCCCcCHHHHHHHHHHHHH
Confidence 34567776663 45788888 5677888999999999999887654 2 23 3368888888765
Q ss_pred hCCc---CCCCccchhhhhhHHHHHHHHH
Q psy2627 115 IGAF---SMNDRVAVVNRIFVRYLDLVRR 140 (309)
Q Consensus 115 lg~l---~~~d~~a~vl~vF~~Yl~lvR~ 140 (309)
. + .+.+...-+-.-+..|++.++.
T Consensus 95 a--l~~~~e~~~~~~~~~~~~~~~~~~a~ 121 (128)
T 2qrw_A 95 A--VASIDSETLDDEHRRELLDYLEMAAH 121 (128)
T ss_dssp H--HHTSCTTTSCHHHHHHHHHHHHHHHH
T ss_pred H--HhHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3 2 2222223344555566655554
No 5
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=30.97 E-value=68 Score=25.21 Aligned_cols=60 Identities=12% Similarity=0.305 Sum_probs=38.9
Q ss_pred HHHHHHHHhHHHHHHHhCCccchhcHHHHHHHHHhccCCCcccc--cCCh-----------hHHHHHHHHHHHHh
Q psy2627 53 QWLNKIGECVETELQKALPEKFHAAIPEISVYLKESFGNSTRID--YGTG-----------HEMAFCMFLLCLFR 114 (309)
Q Consensus 53 ~W~~~l~e~~~~Ll~~~l~~~~~~~~~EL~~Yl~~SFGn~tRID--YGTG-----------HEL~Fl~fL~~L~k 114 (309)
.||++|.+ +..|..+++.+...+..-+..+|+..+|.+.+.. +|.- .+-.|-+||-|+.+
T Consensus 22 ~FY~~v~~--Dp~l~~~F~~d~~~~~~~l~~Fl~~~~GGp~~Y~~~~G~p~l~~~H~~~~I~~~~fd~wl~~~~~ 94 (128)
T 2bkm_A 22 AFYRRVAA--HPDLRPIFPDDLTETAHKQKQFLTQYLGGPPLYTAEHGHPMLRARHLRFEITPKRAEAWLACMRA 94 (128)
T ss_dssp HHHHHHHH--CTTTGGGSCSCCHHHHHHHHHHHHHHTTSCCHHHHHHCCCCHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CHHHHHHCccCHHHHHHHHHHHHHHHcCCCCccccccCCccHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 45555544 2356677776777888889999999998887753 3321 14457777776543
No 6
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=27.21 E-value=1.5e+02 Score=26.78 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhHHHHHHHhCCccchhcHHHHHHHHHhccCCCcccccCChhHHHHHHHHHHHHhhCCc-CCCCccchhh
Q psy2627 50 AFAQWLNKIGECVETELQKALPEKFHAAIPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAF-SMNDRVAVVN 128 (309)
Q Consensus 50 AFR~W~~~l~e~~~~Ll~~~l~~~~~~~~~EL~~Yl~~SFGn~tRIDYGTGHEL~Fl~fL~~L~klg~l-~~~d~~a~vl 128 (309)
+++++.+++++.++..+.+.++......+.|...|+..+=|-+.| ..++++.|-. +|.- ......|.++
T Consensus 5 ~~~~~~~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlR---------P~L~l~~~~~-~g~~~~~~~~~A~ai 74 (273)
T 3qkc_B 5 RTQTYRATIESDIESYLKKAIPIRAPESVFEPMHHLTFAAPRTSA---------SALCVAACEL-VGGDRSDAMAAAAAV 74 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCSSTTHHHHHHHHHHSCCCHH---------HHHHHHHHHH-TTCCGGGTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCCcHH---------HHHHHHHHHH-hCCCHHHHHHHHHHH
Confidence 467888999999999999998876555578999999988888888 3444444432 2321 1111235566
Q ss_pred hhhHHHHHHHHHHHHhhc-c-ccCCCCcccccC
Q psy2627 129 RIFVRYLDLVRRLQCEYR-M-EPAGSHGVWSLD 159 (309)
Q Consensus 129 ~vF~~Yl~lvR~Lq~~Y~-L-EPAGSHGVWGLD 159 (309)
.++..|--+-.-|+..=. - .|+ .|-+||-+
T Consensus 75 EliH~aSLIHDDI~D~d~RRG~pt-~h~~~G~~ 106 (273)
T 3qkc_B 75 HLMHVAAYTHENLPLTDGPMSKSE-IQHKFDPN 106 (273)
T ss_dssp HHHHHHHHHHHSCCBTTBCSSSSC-CCCSSCHH
T ss_pred HHHHHHHHHHcCcccCccCCCCCC-chhhcCHH
Confidence 666666666555542211 0 122 46677755
No 7
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=26.84 E-value=96 Score=28.16 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=63.6
Q ss_pred HHHHHHHHHhHHHHHHHhCCccchhcHHHHHHHHHhccCCCcccccCChhHHHHHHHHHHHHhhCCc-CCCCccchhhhh
Q psy2627 52 AQWLNKIGECVETELQKALPEKFHAAIPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAF-SMNDRVAVVNRI 130 (309)
Q Consensus 52 R~W~~~l~e~~~~Ll~~~l~~~~~~~~~EL~~Yl~~SFGn~tRIDYGTGHEL~Fl~fL~~L~klg~l-~~~d~~a~vl~v 130 (309)
++|.+.+++.++..+.+.++......+.|...|+..+=|.+.| ..++++.|-. .|.= ......|.++.+
T Consensus 2 ~~~~~~~~~~ie~~L~~~l~~~~p~~l~~~~~y~~~~gGKrlR---------P~L~l~~~~~-~g~~~~~~~~~A~aiEl 71 (274)
T 3kra_B 2 QPYWAAIEADIERYLKKSITIRPPETVFGPMHHLTFAAPATAA---------STLCLAACEL-VGGDRSQAMAAAAAIHL 71 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHSCCCHH---------HHHHHHHHHH-TTCCGGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhCCCCcHH---------HHHHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence 4677888888999999998876555588999999988899998 3445544432 2321 111234666777
Q ss_pred hHHHHHHHHHHH--Hh--hccccCCCCcccccC
Q psy2627 131 FVRYLDLVRRLQ--CE--YRMEPAGSHGVWSLD 159 (309)
Q Consensus 131 F~~Yl~lvR~Lq--~~--Y~LEPAGSHGVWGLD 159 (309)
+..|--+-.-|+ .. -|=.|+ .|-+||-+
T Consensus 72 iH~aSLIHDDI~~dD~d~RRG~pt-~h~~~G~~ 103 (274)
T 3kra_B 72 VHAAAYVHEHLPLTDGSRPVSKPA-IQHKYGPN 103 (274)
T ss_dssp HHHHHHHHHTCCCSSSSSCCCSSC-CCCSSCHH
T ss_pred HHHHHHHHcCCcccCCccCCCCCC-chhhcChH
Confidence 777777777776 22 111333 68888855
No 8
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=26.18 E-value=20 Score=29.47 Aligned_cols=10 Identities=50% Similarity=1.096 Sum_probs=8.8
Q ss_pred CCCCcccccC
Q psy2627 150 AGSHGVWSLD 159 (309)
Q Consensus 150 AGSHGVWGLD 159 (309)
+||+|+|||-
T Consensus 3 ~~~~~~wg~r 12 (115)
T 2rsm_A 3 SGSSGKWGLR 12 (115)
T ss_dssp CCCCCCCCCC
T ss_pred CcccCcccee
Confidence 7999999984
No 9
>3ts9_A Interferon-induced helicase C domain-containing P; helix bundle, fancm helicase, super family 2 helicase, SF2 H DEXD/H helicase; 2.00A {Mus musculus}
Probab=24.98 E-value=1.6e+02 Score=24.83 Aligned_cols=43 Identities=12% Similarity=0.355 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCcHHHHHHHHHHHHhHH
Q psy2627 17 SNNVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVE 63 (309)
Q Consensus 17 S~~v~~l~~lL~~l~~~i~e~PP~~~p~RFGN~AFR~W~~~l~e~~~ 63 (309)
.|--..|.+|..+++...+ .+| ++-||.-.|..|.-.++..+.
T Consensus 8 DPF~d~l~~iM~~Ie~~~~-l~p---~~dfGTQ~YEQwvV~~ek~aa 50 (138)
T 3ts9_A 8 NPFKEKLLEIMASIQTYCQ-KSP---MSDFGTQHYEQWAIQMEKKAA 50 (138)
T ss_dssp CHHHHHHHHHHHHHHHHTT-CCC---SSCTTSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHc-CCC---CCCCcchHHHHHHHHHHHHHH
Confidence 4555667777777877765 444 778999999999999998875
No 10
>1ux8_A YJBI protein; oxygen storage/transport, truncated hemoglobin, oxygen transport; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.1
Probab=23.56 E-value=66 Score=25.59 Aligned_cols=60 Identities=12% Similarity=0.270 Sum_probs=38.9
Q ss_pred HHHHHHHHHhHHHHHHHhCCccchhcHHHHHHHHHhccCCCcccc--cCC-----h------hHHHHHHHHHHHH
Q psy2627 52 AQWLNKIGECVETELQKALPEKFHAAIPEISVYLKESFGNSTRID--YGT-----G------HEMAFCMFLLCLF 113 (309)
Q Consensus 52 R~W~~~l~e~~~~Ll~~~l~~~~~~~~~EL~~Yl~~SFGn~tRID--YGT-----G------HEL~Fl~fL~~L~ 113 (309)
..||++|.+ +..|..+++.+...+..-+..+|+..+|.+.+.. +|. - .+-.|-+||-|+.
T Consensus 22 ~~FY~~v~~--Dp~l~~~F~~d~~~~~~~l~~Fl~~~~GGp~~Y~~~~G~p~l~~~H~~~~I~~~~fd~wl~~~~ 94 (132)
T 1ux8_A 22 DTFYERVAS--HPLLKPIFPSDLTETARKQKQFLTQYLGGPPLYTEEHGHPMLRARHLPFPITNERADAWLSCMK 94 (132)
T ss_dssp HHHHHHHHH--CTTTGGGSCSCCHHHHHHHHHHHHHHTTSCCHHHHHHCCCCHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHc--ChHHHHHCccCHHHHHHHHHHHHHHHhCCCcccccccCChhHHHhhcCCCCCHHHHHHHHHHHH
Confidence 445555554 2346677777777888888999998888887753 332 1 1345777777654
No 11
>1avo_A 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=22.77 E-value=57 Score=23.54 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhHHHHHHHhCCccchhcHHHHHHHHHh
Q psy2627 51 FAQWLNKIGECVETELQKALPEKFHAAIPEISVYLKE 87 (309)
Q Consensus 51 FR~W~~~l~e~~~~Ll~~~l~~~~~~~~~EL~~Yl~~ 87 (309)
...|.+++..+|+.|+...+|.. +.||...|.+
T Consensus 11 v~~fk~~l~~eAE~ll~~~fP~K----I~eln~LL~~ 43 (60)
T 1avo_A 11 VDVFREDLCTKTENLLGSYFPKK----ISELDAFLKE 43 (60)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHH----HHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhCcHH----HHHHHHHHcc
Confidence 66899999999999999998865 7788888876
No 12
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=22.10 E-value=89 Score=27.06 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHHHhhhhCCCCCCCCCCCcHHHHHHHHHHHHhHHHHHHHhCCccchhcHHHHHHHHHhccC
Q psy2627 16 PSNNVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAIPEISVYLKESFG 90 (309)
Q Consensus 16 ~S~~v~~l~~lL~~l~~~i~e~PP~~~p~RFGN~AFR~W~~~l~e~~~~Ll~~~l~~~~~~~~~EL~~Yl~~SFG 90 (309)
.+....++++..|+|+.++.-. .-.|.||+.|....+++++....+ . .+.+..+...|..|||
T Consensus 127 ~~t~ea~lvk~aD~l~a~lqa~----e~~~~Gn~ef~~a~~~~~~~l~~~-----~---~~~v~~f~~~~~p~~~ 189 (201)
T 2paq_A 127 YSDEEKSLVKQADALCAYLKCL----EELAAGNNEFLLAKTRLEATLEAR-----R---SQEMDYFMEIFVPSFH 189 (201)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH----HHHHTTCGGGHHHHHHHHHHHHHT-----C---CHHHHHHHHHHSTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHH----HHHHcCChHHHHHHHHHHHHHHhc-----C---CHHHHHHHHHHHHHhC
Confidence 4556677888888888777543 224679999988888776655542 1 1234445555555555
Done!