RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2627
(309 letters)
>2ixm_A Serine/threonine-protein phosphatase 2A regulatory subunit B'; 2
PTPA, ppiase, hydrolase activator; 1.5A {Homo sapiens}
SCOP: a.268.1.1 PDB: 2hv6_A 2hv7_A* 2g62_A
Length = 303
Score = 327 bits (840), Expect = e-113
Identities = 135/277 (48%), Positives = 179/277 (64%), Gaps = 19/277 (6%)
Query: 1 MNEAVRGKAIDTRLEPSNNVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGE 60
+NE V+GK + S + + +L ++ IDETPP+DQP RFGNKA+ W K+ E
Sbjct: 36 LNEGVKGKKLTFEYRVSEAIEKLLALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDE 95
Query: 61 CVETELQKALPEKFHAAIPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSM 120
E + +P AA+PE++VYLKES GNSTRIDYGTGHE AF FL CL +IG +
Sbjct: 96 EAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRV 155
Query: 121 NDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFAFSSKN 180
+D++A+V ++F RYL+++R+LQ YRMEPAGS GVW LDD+QF+PFIWGSSQL
Sbjct: 156 DDQIAIVFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLIDHP--- 212
Query: 181 AVGPDHVYAIPKRQVLKDSDMKQWENSEAY--------HVKTGHFSEHSNQLWNISALPS 232
+ R + + + + + +KTG F+EHSNQLWNISA+PS
Sbjct: 213 --------YLEPRHFVDEKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVPS 264
Query: 233 WSKINQGLLKMYKGEVLAKFPVIQHVLFGSLIKFEPL 269
WSK+NQGL++MYK E L KFPVIQH FGSL+ P+
Sbjct: 265 WSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPV 301
Score = 36.4 bits (84), Expect = 0.007
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 186 HVYAIPKRQVLKDSDMKQWENSEAYH 211
+ IPK+++ DM +W+ S+AY
Sbjct: 2 QNFIIPKKEIHTVPDMGKWKRSQAYA 27
>2ixn_A Serine/threonine-protein phosphatase 2A activator; PP2A phosphatase
activator prolyl isomerase PTPA, isomerase; 2.8A
{Saccharomyces cerevisiae} SCOP: a.268.1.1
Length = 310
Score = 313 bits (802), Expect = e-107
Identities = 86/273 (31%), Positives = 145/273 (53%), Gaps = 8/273 (2%)
Query: 1 MNEAVRGKAI-DTRLEPSNNVMSVFQMLEHFNKLIDETPPIDQ--PQRFGNKAFAQWLNK 57
+ E+V+G + S ++ S+ +L + + P I RFG F + ++
Sbjct: 32 LAESVKGHENSQYKEPISESINSMMNLLSQIKDITQKHPVIKDADSSRFGKVEFRDFYDE 91
Query: 58 IGECVETELQKALPEKFHAAIPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGA 117
+ L+ P + ++S+YL ES+GN RIDYG+GHE+ F L L+ G
Sbjct: 92 VSRNSRKILRSEFPSLTDEQLEQLSIYLDESWGNKRRIDYGSGHELNFMCLLYGLYSYGI 151
Query: 118 FSM-NDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFAF 176
F++ ND +V ++F+ YL ++R L+ +Y +EPAGSHGVW LDDY F+PF++G+ QL
Sbjct: 152 FNLSNDSTNLVLKVFIEYLKIMRILETKYWLEPAGSHGVWGLDDYHFLPFLFGAFQL--- 208
Query: 177 SSKNAVGPDHVYAIPKRQVLKDSDMKQWENSEAYHVKT-GHFSEHSNQLWNISALPSWSK 235
++ + P ++ ++ + + VK+ HS L +IS + +WSK
Sbjct: 209 TTHKHLKPISIHNNELVEMFAHRYLYFGCIAFINKVKSSASLRWHSPMLDDISGVKTWSK 268
Query: 236 INQGLLKMYKGEVLAKFPVIQHVLFGSLIKFEP 268
+ +G++KMYK EVL+K P++QH F +
Sbjct: 269 VAEGMIKMYKAEVLSKLPIMQHFYFSEFLPCPD 301
Score = 32.6 bits (74), Expect = 0.12
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 190 IPKRQVLKDSDMKQWENSEAYH 211
+P++++L DMK WE S
Sbjct: 2 LPEKRLLTPDDMKLWEESPTRA 23
>2ixo_A Serine/threonine-protein phosphatase 2A activator 1; isomerase,
PP2A phosphatase activator prolyl isomerase PTPA,
nuclear protein; 2.6A {Saccharomyces cerevisiae} SCOP:
a.268.1.1 PDB: 2ixp_A*
Length = 323
Score = 300 bits (769), Expect = e-102
Identities = 104/285 (36%), Positives = 161/285 (56%), Gaps = 22/285 (7%)
Query: 1 MNEAVRGKAIDTRLEPSNN---VMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNK 57
+ + +++ V + +L+ LIDETPP+ P+R+GN A +W +K
Sbjct: 45 YTTLISHCSDPDPHATASSIAMVNGLMGVLDKLAHLIDETPPLPGPRRYGNLACREWHHK 104
Query: 58 IGECVETELQKALPEKFHAAIPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGA 117
+ E + LQ+ LP ++H +PE+ YL SFG+STR+DYGTGHE++F + L +G
Sbjct: 105 LDERLPQWLQEMLPSEYHEVVPELQYYLGNSFGSSTRLDYGTGHELSFMATVAALDMLGM 164
Query: 118 FSMNDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFAFS 177
F + R A V +F +Y ++RRL Y +EPAGSHGVW LDD+ + +I GSSQ
Sbjct: 165 FP-HHRGADVFLLFNKYYTIMRRLILTYTLEPAGSHGVWGLDDHFHLVYILGSSQWQLLD 223
Query: 178 SKNAVGPDHVYAIPKRQVLKDSDMKQWENSEAY--------HVKTGHFSEHSNQLWNIS- 228
++ + P R++L S +++++++ Y VK G F EHS L++I+
Sbjct: 224 AQAPLQP--------REILDKSLVREYKDTNFYCQGINFINEVKMGPFEEHSPILYDIAV 275
Query: 229 ALPSWSKINQGLLKMYKGEVLAKFPVIQHVLFGSLI-KFEPLQHD 272
+P WSK+ +GLLKMY EV KFPV+QH FG+ + + H
Sbjct: 276 TVPRWSKVCKGLLKMYSVEVEKKFPVVQHFWFGTGFFPWVNIHHH 320
Score = 37.7 bits (87), Expect = 0.003
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 184 PDHVYAIPKRQVLKDSDMKQWENSEAYH 211
P ++ P +++ +++S A H
Sbjct: 9 PHATFSTPVKRIFDTQTTLDFQSSLAIH 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.006
Identities = 35/291 (12%), Positives = 87/291 (29%), Gaps = 99/291 (34%)
Query: 51 FAQWLNKIGECVETELQKALPEKFHAAIPEISVYLKESFGNSTRIDYGTGHEMAFCMFLL 110
++L+ + + E+ P +I I+ +++ D
Sbjct: 307 LLKYLDCRPQDLPREVLTTNP--RRLSI--IAESIRD---GLATWDN------------- 346
Query: 111 CLFRIGAFSMNDRVAVVNRIFVRYLD--LVRRLQCEYRME---PAGSH-------GVWSL 158
++ D++ + + L+ R++ + P +H +W
Sbjct: 347 --WK---HVNCDKLTTIIESSLNVLEPAEYRKM---FDRLSVFPPSAHIPTILLSLIWFD 398
Query: 159 DDYQFVPFIWGSSQLFAFSSKNAVGPDHVYAIP------KRQVLKDSDM----------- 201
V + ++L +S + +IP K ++ + +
Sbjct: 399 VIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 202 KQWENSE--------------AYHVKTGHFSE--------------------HSNQLWNI 227
K +++ + +H+K E H + WN
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 228 SALPSWSKINQGLLKMYKGEVLAKFPVIQHVLFGSLIKFEPL--QHDIRTP 276
S + + Q LK YK + P + ++ +++ F P ++ I +
Sbjct: 517 SG-SILNTLQQ--LKFYKPYICDNDPKYERLV-NAILDFLPKIEENLICSK 563
>3kez_A Putative sugar binding protein; structural genomics, joint C
structural genomics, JCSG, protein structure initiative;
1.90A {Bacteroides vulgatus atcc 8482}
Length = 461
Score = 32.0 bits (73), Expect = 0.26
Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 16/77 (20%)
Query: 133 RYLDLVRRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFAFSSKNAVGPDHVYAIPK 192
R D++R R++ S + + ++ + W ++ + IPK
Sbjct: 398 RMYDVIRNGMTVKRIDVKDSDINKTKHNTAYMEYDWNFHKI-------------LLPIPK 444
Query: 193 RQVLKDSDMKQ---WEN 206
+++ + +MKQ + +
Sbjct: 445 KEMDANPNMKQNPGYVD 461
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM,
nitrilase, nucleotide-binding protein, cancer; 2.80A
{Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Length = 440
Score = 32.0 bits (73), Expect = 0.26
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 139 RRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLF-------AFSSKNAVGPDHVYAIP 191
RR Y + + +F F + +F F + V HV P
Sbjct: 280 RRSDL-YTLHI--NEKSSETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSP 336
Query: 192 KRQVLKDSDMKQWENSEAYHV 212
KR V + +D+ E ++ + V
Sbjct: 337 KRVVPRLTDLTDAETADLFIV 357
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.57
Identities = 28/145 (19%), Positives = 41/145 (28%), Gaps = 52/145 (35%)
Query: 6 RGKAI---------DTRLEPSNNVMSVFQML-EHFNKLIDETPPIDQPQRFGNKAFAQWL 55
+GK I +T ++ +F+ + EH +
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE----------------- 1722
Query: 56 NKIGECVETEL-QKALPEKFHAAIPEISVY--LKESFGNSTRIDYGTGH---E-MAFCMF 108
G T+ Q AL + E + + LK G GH E A
Sbjct: 1723 --KGLLSATQFTQPAL-----TLM-EKAAFEDLKSK-GLIPADATFAGHSLGEYAA---- 1769
Query: 109 LLCLFRIGAFSMNDRVAVVNRIFVR 133
L L S+ V VV F R
Sbjct: 1770 LASL--ADVMSIESLVEVV---FYR 1789
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for
structural genomics, JCSG, protein structu initiative,
PSI; HET: MLY; 1.90A {Thermotoga maritima}
Length = 284
Score = 29.8 bits (66), Expect = 1.0
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 47 GNKAFAQWLNKIGECVETELQKALPEKFHAAIPE 80
+K + E VE +++ L + E
Sbjct: 3 SDKIHHHHHHMKXEXVEERIREILRPGWDLLTEE 36
>3lhs_A Ferrichrome ABC transporter lipoprotein; siderophore, iron,
receptor, binding protein, T protein; HET: SF8; 1.30A
{Staphylococcus aureus subsp} PDB: 3eiw_A 3eix_A*
3li2_A*
Length = 296
Score = 27.8 bits (62), Expect = 4.4
Identities = 6/50 (12%), Positives = 15/50 (30%), Gaps = 4/50 (8%)
Query: 184 PDHVYAIPKRQVLKDSDMKQWENSEAYH----VKTGHFSEHSNQLWNISA 229
P+ + + ++ K+ + + VK +W S
Sbjct: 226 PERMIIMTDHAKKDSAEFKKLQEDATWKKLNAVKNNRVDIVDRDVWARSR 275
>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein,
micelles, serine P domain swapping, hydrolase; NMR
{Escherichia coli}
Length = 69
Score = 25.5 bits (56), Expect = 5.5
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 113 FRIGAFSMNDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDDYQF 163
I +F+ N RVA + FV Y+ ++ VW D+ Q
Sbjct: 2 LMITSFA-NPRVA---QAFVDYM---ATQGVILTIQQHNQSDVWLADESQA 45
>2nuh_A Periplasmic divalent cation tolerance protein; CUTA, unknown
function; 1.39A {Xylella fastidiosa}
Length = 118
Score = 26.7 bits (59), Expect = 5.6
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 22/69 (31%)
Query: 20 VMSVFQMLEHFNKLID--------ETP-----PIDQPQRFGNKAFAQWLNKIGECVETEL 66
+ + H N I P + G + W+N E +
Sbjct: 57 QLLIKTNAVHVNAAITRLCALHPYRLPEAIAVQVSV----GLPEYLTWINT-----EIDE 107
Query: 67 QKALPEKFH 75
+ +LP H
Sbjct: 108 EYSLPHHHH 116
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid
diphosphate synthase, trans; 1.65A {Pyrobaculum
calidifontis}
Length = 358
Score = 27.3 bits (61), Expect = 6.2
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 49 KAFAQWLNKIGECVETELQKALPEKFHAAIPEISVYL 85
++ K G VE L + L E +Y
Sbjct: 4 DVVSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQ 40
>3tu8_A Burkholderia lethal factor 1 (BLF1); toxin, unknown function; 1.04A
{Burkholderia pseudomallei} PDB: 3tua_A
Length = 210
Score = 27.1 bits (59), Expect = 6.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 193 RQVLKDSDMKQWENSEAYHVKTGHFSEHSNQLWNISA 229
R++ D M+ WE V H + S+ LWN+SA
Sbjct: 117 RRMSSDEWMEDWEVGTDRQVAYLHRAGQSDSLWNLSA 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.418
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,680,152
Number of extensions: 266704
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 17
Length of query: 309
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 216
Effective length of database: 4,105,140
Effective search space: 886710240
Effective search space used: 886710240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)