RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2627
(309 letters)
>d2ixma1 a.268.1.1 (A:23-322) Serine/threonine-protein phosphatase
2A regulatory subunit B', PTPA {Human (Homo sapiens)
[TaxId: 9606]}
Length = 300
Score = 343 bits (882), Expect = e-119
Identities = 138/277 (49%), Positives = 182/277 (65%), Gaps = 19/277 (6%)
Query: 1 MNEAVRGKAIDTRLEPSNNVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGE 60
+NE V+GK + S + + +L ++ IDETPP+DQP RFGNKA+ W K+ E
Sbjct: 33 LNEGVKGKKLTFEYRVSEAIEKLLALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDE 92
Query: 61 CVETELQKALPEKFHAAIPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSM 120
E + +P AA+PE++VYLKES GNSTRIDYGTGHE AF FL CL +IG +
Sbjct: 93 EAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRV 152
Query: 121 NDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFAFSSKN 180
+D++A+V ++F RYL+++R+LQ YRMEPAGS GVW LDD+QF+PFIWGSSQL
Sbjct: 153 DDQIAIVFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQL------- 205
Query: 181 AVGPDHVYAIPKRQVLKDSDMKQWENSEAYH--------VKTGHFSEHSNQLWNISALPS 232
DH Y P+ + + + + + +KTG F+EHSNQLWNISA+PS
Sbjct: 206 ---IDHPYLEPR-HFVDEKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVPS 261
Query: 233 WSKINQGLLKMYKGEVLAKFPVIQHVLFGSLIKFEPL 269
WSK+NQGL++MYK E L KFPVIQH FGSL+ P+
Sbjct: 262 WSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPV 298
Score = 33.6 bits (77), Expect = 0.022
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 188 YAIPKRQVLKDSDMKQWENSEAYH 211
+ IPK+++ DM +W+ S+AY
Sbjct: 1 FIIPKKEIHTVPDMGKWKRSQAYA 24
>d2ixoa1 a.268.1.1 (A:2-317) Serine/threonine-protein phosphatase 2A
regulatory subunit B', PTPA {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 316
Score = 316 bits (811), Expect = e-108
Identities = 100/270 (37%), Positives = 151/270 (55%), Gaps = 11/270 (4%)
Query: 1 MNEAVRGKAIDTRLEPSN---NVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNK 57
+ + ++ V + +L+ LIDETPP+ P+R+GN A +W +K
Sbjct: 44 YTTLISHCSDPDPHATASSIAMVNGLMGVLDKLAHLIDETPPLPGPRRYGNLACREWHHK 103
Query: 58 IGECVETELQKALPEKFHAAIPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGA 117
+ E + LQ+ LP ++H +PE+ YL SFG+STR+DYGTGHE++F + L +G
Sbjct: 104 LDERLPQWLQEMLPSEYHEVVPELQYYLGNSFGSSTRLDYGTGHELSFMATVAALDMLGM 163
Query: 118 FSMNDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFAFS 177
F + V +F +Y ++RRL Y +EPAGSHGVW LDD+ + +I GSSQ
Sbjct: 164 FPHHRGADVF-LLFNKYYTIMRRLILTYTLEPAGSHGVWGLDDHFHLVYILGSSQWQLLD 222
Query: 178 SKNAVGPDHVYAIPKRQVL---KDSDMKQWENSEAYHVKTGHFSEHSNQLWNIS-ALPSW 233
++ + P I + ++ KD++ + VK G F EHS L++I+ +P W
Sbjct: 223 AQAPLQPRE---ILDKSLVREYKDTNFYCQGINFINEVKMGPFEEHSPILYDIAVTVPRW 279
Query: 234 SKINQGLLKMYKGEVLAKFPVIQHVLFGSL 263
SK+ +GLLKMY EV KFPV+QH FG+
Sbjct: 280 SKVCKGLLKMYSVEVEKKFPVVQHFWFGTG 309
Score = 36.8 bits (85), Expect = 0.002
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 184 PDHVYAIPKRQVLKDSDMKQWENSEAYH 211
P ++ P +++ +++S A H
Sbjct: 8 PHATFSTPVKRIFDTQTTLDFQSSLAIH 35
>d2ixna1 a.268.1.1 (A:3-299) Serine/threonine-protein phosphatase 2A
regulatory subunit B', PTPA {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 297
Score = 302 bits (776), Expect = e-103
Identities = 86/270 (31%), Positives = 145/270 (53%), Gaps = 8/270 (2%)
Query: 1 MNEAVRGKAI-DTRLEPSNNVMSVFQMLEHFNKLIDETPPI--DQPQRFGNKAFAQWLNK 57
+ E+V+G + S ++ S+ +L + + P I RFG F + ++
Sbjct: 30 LAESVKGHENSQYKEPISESINSMMNLLSQIKDITQKHPVIKDADSSRFGKVEFRDFYDE 89
Query: 58 IGECVETELQKALPEKFHAAIPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGA 117
+ L+ P + ++S+YL ES+GN RIDYG+GHE+ F L L+ G
Sbjct: 90 VSRNSRKILRSEFPSLTDEQLEQLSIYLDESWGNKRRIDYGSGHELNFMCLLYGLYSYGI 149
Query: 118 FSM-NDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFAF 176
F++ ND +V ++F+ YL ++R L+ +Y +EPAGSHGVW LDDY F+PF++G+ QL
Sbjct: 150 FNLSNDSTNLVLKVFIEYLKIMRILETKYWLEPAGSHGVWGLDDYHFLPFLFGAFQL--- 206
Query: 177 SSKNAVGPDHVYAIPKRQVLKDSDMKQWENSEAYHVK-TGHFSEHSNQLWNISALPSWSK 235
++ + P ++ ++ + + VK + HS L +IS + +WSK
Sbjct: 207 TTHKHLKPISIHNNELVEMFAHRYLYFGCIAFINKVKSSASLRWHSPMLDDISGVKTWSK 266
Query: 236 INQGLLKMYKGEVLAKFPVIQHVLFGSLIK 265
+ +G++KMYK EVL+K P++QH F +
Sbjct: 267 VAEGMIKMYKAEVLSKLPIMQHFYFSEFLP 296
Score = 32.1 bits (73), Expect = 0.065
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 191 PKRQVLKDSDMKQWENSEAYH 211
P++++L DMK WE S
Sbjct: 1 PEKRLLTPDDMKLWEESPTRA 21
>d2ibna1 a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {Human
(Homo sapiens) [TaxId: 9606]}
Length = 249
Score = 27.1 bits (60), Expect = 2.3
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 8 KAIDTRLEPSNNVMSVFQMLEHFNKLIDE-TPPIDQPQ 44
S M+V + ++ + L+DE P +D P
Sbjct: 22 SKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPN 59
>d1qf5a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA
{Escherichia coli [TaxId: 562]}
Length = 431
Score = 25.7 bits (56), Expect = 8.2
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 101 HEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDD 160
+ ++ D + + LD R+ E G+ G D
Sbjct: 174 NYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFE--GAQGTLLDID 231
Query: 161 YQFVPFIWGSSQLFA-FSSKNAVGP---DHVYAI 190
+ P++ S+ ++ + +GP D+V I
Sbjct: 232 HGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGI 265
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate
uridylyltransferase {Escherichia coli [TaxId: 562]}
Length = 171
Score = 25.4 bits (55), Expect = 8.2
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 167 IWGSSQLFAFSSKNAVGPDHVYAIPKRQVLKDSDMKQWENSEAYHVK 213
+ + A A P +PK VL+ +D+ + S+
Sbjct: 36 VVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALAL 82
>d1ji1a1 b.1.18.2 (A:1-122) Maltogenic amylase, N-terminal domain N
{Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}
Length = 122
Score = 24.5 bits (53), Expect = 9.9
Identities = 4/36 (11%), Positives = 11/36 (30%)
Query: 127 VNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDDYQ 162
+ ++Y D M + + D ++
Sbjct: 43 ITSANIKYWDTADNAFHWVPMVWDSNDPTGTFDYWK 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.418
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,151,876
Number of extensions: 52628
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 12
Length of query: 309
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,240,546
Effective search space: 277882304
Effective search space used: 277882304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)