Query psy2630
Match_columns 472
No_of_seqs 180 out of 292
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 21:06:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1858|consensus 100.0 1.4E-92 3.1E-97 797.6 26.4 412 1-461 1067-1484(1496)
2 KOG2005|consensus 99.9 4.9E-23 1.1E-27 220.3 11.3 203 76-292 622-861 (878)
3 COG5110 RPN1 26S proteasome re 99.7 1.2E-17 2.7E-22 176.5 12.5 209 68-291 616-861 (881)
4 KOG2005|consensus 98.2 2.3E-06 4.9E-11 93.8 7.4 93 78-190 468-561 (878)
5 COG5110 RPN1 26S proteasome re 97.7 7.8E-05 1.7E-09 80.7 7.0 95 77-191 465-560 (881)
6 PF01851 PC_rep: Proteasome/cy 97.4 0.00022 4.7E-09 50.5 3.5 28 81-108 1-28 (35)
7 KOG2062|consensus 97.2 0.0028 6E-08 71.0 11.3 162 78-250 535-756 (929)
8 COG5116 RPN2 26S proteasome re 95.7 0.084 1.8E-06 58.3 11.1 160 79-249 533-752 (926)
9 PF01851 PC_rep: Proteasome/cy 94.0 0.063 1.4E-06 37.9 3.1 26 133-158 2-27 (35)
10 KOG1858|consensus 93.0 0.093 2E-06 63.0 4.1 113 78-199 887-1000(1496)
11 KOG2062|consensus 91.2 0.41 8.9E-06 54.3 6.3 76 77-157 394-493 (929)
12 COG5116 RPN2 26S proteasome re 84.6 1.2 2.6E-05 49.6 4.6 64 81-160 430-493 (926)
13 PF09719 C_GCAxxG_C_C: Putativ 69.9 7.5 0.00016 34.1 4.5 67 74-140 38-116 (120)
14 KOG4027|consensus 61.8 7.7 0.00017 36.8 3.1 22 242-263 58-79 (187)
15 TIGR01909 C_GCAxxG_C_C C_GCAxx 53.7 31 0.00067 30.7 5.5 68 74-141 39-117 (120)
16 cd00126 PAH Pancreatic Hormone 35.6 49 0.0011 23.9 3.0 29 209-237 1-35 (36)
17 COG3493 CitS Na+/citrate sympo 27.3 2.4E+02 0.0052 30.6 7.8 72 84-155 299-408 (438)
18 smart00309 PAH Pancreatic horm 25.0 96 0.0021 22.4 3.0 29 209-237 1-35 (36)
19 PF00159 Hormone_3: Pancreatic 23.4 1.1E+02 0.0025 22.0 3.2 19 220-238 18-36 (36)
No 1
>KOG1858|consensus
Probab=100.00 E-value=1.4e-92 Score=797.61 Aligned_cols=412 Identities=43% Similarity=0.725 Sum_probs=377.1
Q ss_pred CCCCCchhhhhccCchHHHHHHHHhhccccccCCCChHHHhhcCCccchhhhccCCCCCCCCCccCChhhhhhhHHHHHH
Q psy2630 1 MNAPNTQYLLDFVCPDFLMLRMIARGLILWDDVMPTVEWVESHIPSTIIPYCLRKPRANSVEDEAVDFETMNQAYCNIVA 80 (472)
Q Consensus 1 l~~P~T~~~Ld~vRPD~llLR~lAr~LImWd~I~pt~eWi~s~iP~~i~~~~~~~~~~~~~~~~~~d~e~~~qay~~Iia 80 (472)
|++|+|+|+||++|||++++|++||||||||+|.|+.+||++|+|++|++.... .+++|.|++.|+|+||+|
T Consensus 1067 l~~p~t~yll~~vrPd~l~lR~~a~~lImW~~I~p~~~wv~~~vp~~ir~~~~~--------~~dvd~~tl~q~~~~~~a 1138 (1496)
T KOG1858|consen 1067 LRPPDTRYLLDFVRPDFLLLRVIARNLIMWDRIKPDYDWVKSQVPDVIREQADL--------QEDVDLETLSQAYVNILA 1138 (1496)
T ss_pred cCCCchhhHHhhcchHHHHHHHHHhhhhHHHhhCchHHHHHhhCCHHHHHhhhh--------hhhhhhhhHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999987432 268999999999999999
Q ss_pred HHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhhhhhhhHhhhh---hhhHHHHHHHHHHHhHHHHccCCcHHHHHHHHHHH
Q psy2630 81 GACMAMGLRFAGSANKHAYNVLINYCNLFTSLSAKSIAELAG---KFTIETCLNVILLSLAMVMSGTGDLEVLRICRYLR 157 (472)
Q Consensus 81 GaclalGLkyAGt~n~~a~~~Ll~yld~fl~~~~~~~~~~~~---r~t~~~cl~v~~lsls~VmAGTGdl~vlr~lR~L~ 157 (472)
|||||||||||||+|..|+++|..+++.|+++.+.|.....+ +.|++.|++++++|+|||||||||+||||++|+||
T Consensus 1139 Gac~slgLrfagt~n~~aknil~s~v~~fl~l~~~P~~~~~~~~~~~tv~~cl~v~i~sls~vmagSgdleVlr~~r~Lr 1218 (1496)
T KOG1858|consen 1139 GACFSLGLRFAGTGNLKAKNILNSFVDDFLRLCSLPLKSNDGRVTAVTVERCLSVLIISLSMVMAGSGDLEVLRRLRFLR 1218 (1496)
T ss_pred HHHHHHHhhhcccCChhHHHHHHHHHHHHHHHhhccCccCCCcccchhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999877655 99999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCChhhHHHHHHHHHHHhhCCcccccCCChHHHHHHHHHHccCCCCCCCChhhhHHHHHHHHHhhcCCe
Q psy2630 158 TRVESRPPLSSVISYGSYVAVHMALGLLFLGGGMYTLSTSPPAIAALVTAFFPKFPTHSLDNRFHLQALRHLYVLAVEPR 237 (472)
Q Consensus 158 ~~~~~~~~~~~~~~YG~hmA~~mAlGlLFLGgG~~Tl~tS~~aIA~Llia~yP~fP~~~~DN~~HLQAlRHlwvLAvepR 237 (472)
+++++. .+++||.|||+|||+|+||||||||||+|||.+||+|+|+|||.||.+++|||||+||+||||+||+|||
T Consensus 1219 ~~~~~~----~~~~yg~~ma~h~alGil~lG~Gr~t~s~s~~sIa~ll~slfp~fP~~~~Dnr~hlqalR~l~~La~e~r 1294 (1496)
T KOG1858|consen 1219 SRTSPY----GHMNYGAQMATHMALGILFLGGGRYTISTSNLSIAALLISLFPHFPISPSDNRYHLQALRHLYVLAVEPR 1294 (1496)
T ss_pred HhccCC----CcccchhHHHHHHhhceeEecCcccccCCCcHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHhcccc
Confidence 999854 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeCCCCceEEEEEEEEEEcCceeE--EecccccCCCCccceEEEcCCCeeeEEEEcCCChHHHHHHHcCCceEEEe
Q psy2630 238 LLIPRDIDCGNLCYAHITVVYLNKEQFT--AKAPCLLPELHLLEEVRINDKRYWPITFQKNRNWKQLQYLLLGQKCIDIK 315 (472)
Q Consensus 238 ~Lv~~Dvdt~~~v~vpv~v~~~~~~~~~--~~tPcLLP~~~~I~~i~v~~~~Y~p~~id~~~~~~~l~~~l~~~~~l~Vk 315 (472)
||+|+|+||+.||++|++|++|.+.... -.+||+||+.+.+++|.+++++|||+.|+.+.++.+++ ++++++|+
T Consensus 1295 ~lip~didt~~~~l~~~~v~~k~~~~~~~~~iap~lLP~~~~l~~v~v~g~~yw~~~iel~~~~~~~~----ks~~l~i~ 1370 (1496)
T KOG1858|consen 1295 LLIPRDIDTGQPCLAPLNVVQKGTTLYSLTEIAPILLPEYSTLSSVSVLGPNYWPVKIELSFNSQHLE----KSNTLDIN 1370 (1496)
T ss_pred cccccccccCceEEEeeeEEecccchhhhhhcCCeeccccccchhhhhcCCccceEEEecccchhhcc----cccccccc
Confidence 9999999999999999999999988744 49999999999999999999999999999999987754 78999999
Q ss_pred cCCCCCCCCCCcccchhHHHHHhhccCcccccccccccccccCchHHHHHHHHhhccCCC-CCchhHHHHHHHHHHHHHh
Q psy2630 316 QRTGCLSYLEDPHGYKTMLAHTLTINKTIAWSVLEESIFSFSSDPAIIKFTESFFNVINV-GSKNEYESKLLIKVIYESL 394 (472)
Q Consensus 316 rr~g~lsY~~dp~g~~s~l~~~l~~~~~~~~~~~~~~~~~fs~d~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~l~ec~ 394 (472)
.|.+.++|.+||.++++++++++. +.. .|++||.+++|++++|+...+ .++. .. .=+|+|+
T Consensus 1371 ~~~~~~~~~eD~~~~~~l~a~t~~----------~~~--~F~s~~s~~~~~~~~~~~~~n~~~~~-~~-----ld~~~~~ 1432 (1496)
T KOG1858|consen 1371 PRDGTLSREEDSDLFKSLLATTLP----------PTS--LFSSEPSLLNFASLCCDNNVNSLGDK-LL-----LDFFDNV 1432 (1496)
T ss_pred ccccceeecCChhHhHHHHhhcCC----------cch--hccCCcHHHHHHHhhcccccccccch-hh-----hhhhhhh
Confidence 999999999999999999998776 222 899999999999999998543 3333 22 2299999
Q ss_pred hhcccccchHHHHHHHHHhcCCCCCCcchhhhHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHHH
Q psy2630 395 IRDKLTIVPIWLSIIEALSRLPSPLSSYEIWQIKLLQAKVKSARDLSSSELVAADMALSITHKVIVI 461 (472)
Q Consensus 395 ~~d~~~~L~~~~~l~~~~~~~~~~~~~~~lw~lkl~~~~~~~~~~~~~~~~i~~~f~~~lk~~~~~~ 461 (472)
++|.++.+|+ .-++..+.||.+++.+|.++ ..+....+.+.++.+...+++.
T Consensus 1433 t~~~~e~~~~------------~~~~~~~~~~~~~l~~~~k~---~~e~~n~S~~l~~~~~~~~~~~ 1484 (1496)
T KOG1858|consen 1433 TRDRIESLSV------------LLQNFESFWQGKLLAKLLKR---AEELLNLSRDLLQDEQNRLTSE 1484 (1496)
T ss_pred HHHHHHhhhh------------hhccccchhhHHHHHHHHHH---HHHhhcccHHHHHHHhhhccce
Confidence 9999999998 23477889999999999884 4556778888888888777653
No 2
>KOG2005|consensus
Probab=99.88 E-value=4.9e-23 Score=220.35 Aligned_cols=203 Identities=24% Similarity=0.350 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhhh----------hhh---hHhhhhhhhHHHHHHH---HHHHhHH
Q psy2630 76 CNIVAGACMAMGLRFAGSANKHAYNVLINYCNLFTSLS----------AKS---IAELAGKFTIETCLNV---ILLSLAM 139 (472)
Q Consensus 76 ~~IiaGaclalGLkyAGt~n~~a~~~Ll~yld~fl~~~----------~~~---~~~~~~r~t~~~cl~v---~~lsls~ 139 (472)
+++++-|..|||......|..+.++++++|.+.-+|.. ++| +.++++|.+++...+| .++||++
T Consensus 622 ~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~eva~naIfamGL 701 (878)
T KOG2005|consen 622 LAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEVAMNAIFAMGL 701 (878)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHHHHHHHHHhcc
Confidence 48999999999999999999999999999999888764 344 4567899999988887 6899999
Q ss_pred HHccCCcHHHHHHHHHHHhcccCCCCCCCCCChhhHHHHHHHHHHHhhCCcccccCC--------ChHHHHHHHHHHccC
Q psy2630 140 VMSGTGDLEVLRICRYLRTRVESRPPLSSVISYGSYVAVHMALGLLFLGGGMYTLST--------SPPAIAALVTAFFPK 211 (472)
Q Consensus 140 VmAGTGdl~vlr~lR~L~~~~~~~~~~~~~~~YG~hmA~~mAlGlLFLGgG~~Tl~t--------S~~aIA~Llia~yP~ 211 (472)
|.|||+|.++.++||+|.+++. ++ -...|.++.|+|+++||+|+.|+++ ++.+.|+|+..+|-.
T Consensus 702 iGAGTnNARla~mLrqlaSYyy------Kd--~~~Lf~vriAQGL~hlGKGtltl~p~~~dr~ll~p~alagl~t~~~~~ 773 (878)
T KOG2005|consen 702 IGAGTNNARLAQMLRQLASYYY------KD--SKALFVVRIAQGLVHLGKGTLTLSPFHSDRQLLMPTALAGLLTTVFAL 773 (878)
T ss_pred ccCCcchHHHHHHHHHHHHHHh------cc--chhHHHHHHHHHHHHhcCCceecccccchhhhhchHHHHHHHHHHHHH
Confidence 9999999999999999999998 33 4679999999999999999999998 679999999999988
Q ss_pred C-CCCCCChhhhHHHHHHHHHhhcCCeeEEEeeCCCCceEEEEEEEEE------EcCce------eEEecccccCCCCcc
Q psy2630 212 F-PTHSLDNRFHLQALRHLYVLAVEPRLLIPRDIDCGNLCYAHITVVY------LNKEQ------FTAKAPCLLPELHLL 278 (472)
Q Consensus 212 f-P~~~~DN~~HLQAlRHlwvLAvepR~Lv~~Dvdt~~~v~vpv~v~~------~~~~~------~~~~tPcLLP~~~~I 278 (472)
. ++..-.+++|. +-++.++|+.||+++++| +.+||+.|+|||+. +.|++ ++++||+||.+.
T Consensus 774 LD~~i~l~~~~H~--~ly~Lv~amqprm~~T~~-e~~~pl~V~VRVGqaVdvVGqaGrPKtITg~qTHtTPVlLahg--- 847 (878)
T KOG2005|consen 774 LDANIILLVKSHY--LLYFLVLAMQPRMLVTVD-EELEPLPVNVRVGQAVDVVGQAGRPKTITGFQTHTTPVLLAHG--- 847 (878)
T ss_pred hccchhccchHHH--HHHHHHHhhCceEEEeec-ccCccccceeeccchhhhhhccCCCceecceeccCcceecccc---
Confidence 7 44334458897 888999999999999999 89999999999986 56665 899999999999
Q ss_pred ceEEEcCCCeeeEE
Q psy2630 279 EEVRINDKRYWPIT 292 (472)
Q Consensus 279 ~~i~v~~~~Y~p~~ 292 (472)
+|.|.+.+.|-|++
T Consensus 848 eRAElatd~y~p~t 861 (878)
T KOG2005|consen 848 ERAELATDEYLPLT 861 (878)
T ss_pred hhhhhccccccccc
Confidence 49999999998864
No 3
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.2e-17 Score=176.46 Aligned_cols=209 Identities=19% Similarity=0.239 Sum_probs=170.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhhh----------hhh---hHhhhhhhhHHHHHHH--
Q psy2630 68 FETMNQAYCNIVAGACMAMGLRFAGSANKHAYNVLINYCNLFTSLS----------AKS---IAELAGKFTIETCLNV-- 132 (472)
Q Consensus 68 ~e~~~qay~~IiaGaclalGLkyAGt~n~~a~~~Ll~yld~fl~~~----------~~~---~~~~~~r~t~~~cl~v-- 132 (472)
.|+..+.| ..++-|.+|||......|..+.++++++|-..-+|.. +.| +.+.+.|++++..+++
T Consensus 616 ~ea~ie~~-a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm~vfDtL~r~shd~dl~v~~ 694 (881)
T COG5110 616 EEALIESL-ALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQMNVFDTLERSSHDGDLNVII 694 (881)
T ss_pred hHHHHHHH-HHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcchHHHHHHHHhccccchhHHH
Confidence 37777777 8999999999999999999999999999987766542 334 3457899999988888
Q ss_pred -HHHHhHHHHccCCcHHHHHHHHHHHhcccCCCCCCCCCChhhHHHHHHHHHHHhhCCcccccCCC--------hHHHHH
Q psy2630 133 -ILLSLAMVMSGTGDLEVLRICRYLRTRVESRPPLSSVISYGSYVAVHMALGLLFLGGGMYTLSTS--------PPAIAA 203 (472)
Q Consensus 133 -~~lsls~VmAGTGdl~vlr~lR~L~~~~~~~~~~~~~~~YG~hmA~~mAlGlLFLGgG~~Tl~tS--------~~aIA~ 203 (472)
.++||++|.|||.|.++.++||++.+++.. + -...+.++.|+|+|.||+|++|+++= +.+.|+
T Consensus 695 ntIfamGLiGAGT~NaRlaqlLrQlaSYY~k------e--s~aLfv~riAQGLl~LGKGtmti~p~~~d~~~l~~~~~ag 766 (881)
T COG5110 695 NTIFAMGLIGAGTLNARLAQLLRQLASYYYK------E--SKALFVLRIAQGLLSLGKGTMTISPLYFDKTTLMPKNTAG 766 (881)
T ss_pred HHHHHhhccccCcchHHHHHHHHHHHHHHhh------c--cchhhHHHHHHHHHHhcCCceeeccccccchhhcchhHHH
Confidence 489999999999999999999999999983 3 35688999999999999999999983 478899
Q ss_pred HHHHHccCC-CCCCCChhhhHHHHHHHHHhhcCCeeEEEeeCCCCceEEEEEEEEE------EcCce------eEEeccc
Q psy2630 204 LVTAFFPKF-PTHSLDNRFHLQALRHLYVLAVEPRLLIPRDIDCGNLCYAHITVVY------LNKEQ------FTAKAPC 270 (472)
Q Consensus 204 Llia~yP~f-P~~~~DN~~HLQAlRHlwvLAvepR~Lv~~Dvdt~~~v~vpv~v~~------~~~~~------~~~~tPc 270 (472)
|+...|-.. |...---.+| ++-++...++.||.+++.. +.|+|+.|.|||+. +.|++ ++++||+
T Consensus 767 l~ttv~~lld~~~f~L~ssH--~l~y~l~~~irp~~~vtl~-e~ge~i~vnvRVGqav~tVGqaGrPKkitgw~ThttPV 843 (881)
T COG5110 767 LFTTVFMLLDSSIFPLVSSH--ALMYFLLCQIRPQKYVTLS-EKGEPIKVNVRVGQAVNTVGQAGRPKKITGWQTHTTPV 843 (881)
T ss_pred HHHHHHHHHccccchhhhhH--HHHHHHHhccCcceEEEec-CCCceeeeEEeecchhhhhhccCCCceeeeeeecCcce
Confidence 988887443 2111111234 2667778999999999999 89999999999985 44543 8999999
Q ss_pred ccCCCCccceEEEcCCCeeeE
Q psy2630 271 LLPELHLLEEVRINDKRYWPI 291 (472)
Q Consensus 271 LLP~~~~I~~i~v~~~~Y~p~ 291 (472)
||.+- +|.+.+.+.|-+.
T Consensus 844 lL~h~---eRAEl~td~y~~~ 861 (881)
T COG5110 844 LLSHK---ERAELDTDEYNVC 861 (881)
T ss_pred eeccc---hhhhcccccccch
Confidence 99988 4888888888664
No 4
>KOG2005|consensus
Probab=98.22 E-value=2.3e-06 Score=93.78 Aligned_cols=93 Identities=26% Similarity=0.357 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHhHHHHccCCcHHHHHH-HHHH
Q psy2630 78 IVAGACMAMGLRFAGSANKHAYNVLINYCNLFTSLSAKSIAELAGKFTIETCLNVILLSLAMVMSGTGDLEVLRI-CRYL 156 (472)
Q Consensus 78 IiaGaclalGLkyAGt~n~~a~~~Ll~yld~fl~~~~~~~~~~~~r~t~~~cl~v~~lsls~VmAGTGdl~vlr~-lR~L 156 (472)
+..|++|++|+.||||.+++++..|...+.. ++... ....++.+|++||.+||+|-+|... +..+
T Consensus 468 ~ri~aIlGLglayaGsq~e~V~~lL~Pi~~d-------------~~~~~-ev~~~aslsLG~IfvGscn~dvts~ilqtl 533 (878)
T KOG2005|consen 468 HRIGAILGLGLAYAGSQREEVLELLSPIMFD-------------TKSPM-EVVAFASLSLGMIFVGSCNEDVTSSILQTL 533 (878)
T ss_pred eehHHhhhhHHhhcCCchHHHHHHHhHHhcC-------------CCCch-hHHHHHHhhcceeEEecCChHHHHHHHHHH
Confidence 5789999999999999999998755433222 22222 2345688999999999999999976 8888
Q ss_pred HhcccCCCCCCCCCChhhHHHHHHHHHHHhhCCc
Q psy2630 157 RTRVESRPPLSSVISYGSYVAVHMALGLLFLGGG 190 (472)
Q Consensus 157 ~~~~~~~~~~~~~~~YG~hmA~~mAlGlLFLGgG 190 (472)
.+|...+ .+..|+.+++ +++|+||+|+|
T Consensus 534 mekse~E----l~d~~~RFL~--LGL~llflgkq 561 (878)
T KOG2005|consen 534 MEKSETE----LEDQWFRFLA--LGLALLFLGKQ 561 (878)
T ss_pred HHhhhhh----hhchHHHHHH--HHHHHHHhccc
Confidence 8886533 5678999999 99999999999
No 5
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=7.8e-05 Score=80.73 Aligned_cols=95 Identities=20% Similarity=0.260 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHhHHHHccCCcHHHHHH-HHH
Q psy2630 77 NIVAGACMAMGLRFAGSANKHAYNVLINYCNLFTSLSAKSIAELAGKFTIETCLNVILLSLAMVMSGTGDLEVLRI-CRY 155 (472)
Q Consensus 77 ~IiaGaclalGLkyAGt~n~~a~~~Ll~yld~fl~~~~~~~~~~~~r~t~~~cl~v~~lsls~VmAGTGdl~vlr~-lR~ 155 (472)
-+++.|++++|+.|+||.++++++.|....-. +...+ .....+.++++.|++||+|-++... ++.
T Consensus 465 k~~~aaiLGlg~afsGt~~eevl~lL~Pi~~s-------------td~pi-e~~~~asltLg~vFvGtcngD~ts~ilqt 530 (881)
T COG5110 465 KHVIAAILGLGAAFSGTQAEEVLELLQPIMFS-------------TDSPI-EVVFFASLTLGSVFVGTCNGDLTSLILQT 530 (881)
T ss_pred HHHHHHHhhhHHhhcCCcHHHHHHHhhhhhcC-------------CCCcH-HHHHHHHHhhhheEeeccCchHHHHHHHH
Confidence 46788999999999999999999988653221 11112 1234578999999999999999877 777
Q ss_pred HHhcccCCCCCCCCCChhhHHHHHHHHHHHhhCCcc
Q psy2630 156 LRTRVESRPPLSSVISYGSYVAVHMALGLLFLGGGM 191 (472)
Q Consensus 156 L~~~~~~~~~~~~~~~YG~hmA~~mAlGlLFLGgG~ 191 (472)
+-+|...+ .++.++.+|| +++|.||.|.|.
T Consensus 531 f~Er~~~e----~~tqw~RFla--LgLa~Lf~g~~d 560 (881)
T COG5110 531 FVERGKIE----SETQWFRFLA--LGLASLFYGRKD 560 (881)
T ss_pred HHHhhhhh----hhhHHHHHHH--HHHHHHHccccc
Confidence 77776533 6788999999 899999999987
No 6
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=97.35 E-value=0.00022 Score=50.46 Aligned_cols=28 Identities=36% Similarity=0.624 Sum_probs=24.2
Q ss_pred HHHHHHHhhhhcCCCHHHHHHHHHHHHH
Q psy2630 81 GACMAMGLRFAGSANKHAYNVLINYCNL 108 (472)
Q Consensus 81 GaclalGLkyAGt~n~~a~~~Ll~yld~ 108 (472)
|||+||||.||||.|+++.+.|.+|+..
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~ 28 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSD 28 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCT
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999999998765
No 7
>KOG2062|consensus
Probab=97.17 E-value=0.0028 Score=70.98 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhhhhcCCCHHHHHHHHHHH-----HHHhhhhhhhhHhhhhhhhHHHHHH---------------HHHHHh
Q psy2630 78 IVAGACMAMGLRFAGSANKHAYNVLINYC-----NLFTSLSAKSIAELAGKFTIETCLN---------------VILLSL 137 (472)
Q Consensus 78 IiaGaclalGLkyAGt~n~~a~~~Ll~yl-----d~fl~~~~~~~~~~~~r~t~~~cl~---------------v~~lsl 137 (472)
+-.|..+++|+.|.||+|..|...|+||. |...|-.-...+ .+--..-++|.. -+++||
T Consensus 535 lR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialG-FVl~~dp~~~~s~V~lLses~N~HVRyGaA~AL 613 (929)
T KOG2062|consen 535 LRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALG-FVLFRDPEQLPSTVSLLSESYNPHVRYGAAMAL 613 (929)
T ss_pred hhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHhe-eeEecChhhchHHHHHHhhhcChhhhhhHHHHH
Confidence 46789999999999999999999999984 222221100000 000111122222 268999
Q ss_pred HHHHccCCcHHHHHHHHHHHhcccC----------------CC----C-------------CCCCCChhhHHHHHHHHHH
Q psy2630 138 AMVMSGTGDLEVLRICRYLRTRVES----------------RP----P-------------LSSVISYGSYVAVHMALGL 184 (472)
Q Consensus 138 s~VmAGTGdl~vlr~lR~L~~~~~~----------------~~----~-------------~~~~~~YG~hmA~~mAlGl 184 (472)
++.-||||+-+....|--|-+.... .+ | ..++-.-=..|-.-+|+|+
T Consensus 614 GIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilAqGi 693 (929)
T KOG2062|consen 614 GIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAILAQGI 693 (929)
T ss_pred hhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh
Confidence 9999999999999888877664321 00 0 0011111224445688999
Q ss_pred HhhCCcccccCC-------ChHHHHHHHHHHccCCCCCCCChhhhHHHHHHHHHhhcCCeeEEEeeCCCCceE
Q psy2630 185 LFLGGGMYTLST-------SPPAIAALVTAFFPKFPTHSLDNRFHLQALRHLYVLAVEPRLLIPRDIDCGNLC 250 (472)
Q Consensus 185 LFLGgG~~Tl~t-------S~~aIA~Llia~yP~fP~~~~DN~~HLQAlRHlwvLAvepR~Lv~~Dvdt~~~v 250 (472)
+=-||-..|++- +-.||++|++.+.= + +--+|-||-+||..|-|++-.+-|-..|.
T Consensus 694 ldaGGrNvtislqs~tg~~~~~~vvGl~~Flq~---------W-yWfPL~~flSLaf~PT~vigln~dLk~Pk 756 (929)
T KOG2062|consen 694 LDAGGRNVTISLQSMTGHTKLDAVVGLVVFLQY---------W-YWFPLIHFLSLAFTPTTVIGLNEDLKIPK 756 (929)
T ss_pred hhcCCceEEEEEeccCCCCchHHHHHHHHHHHH---------H-HHHHHHHHHHHhcCcceEEEeccccCCcc
Confidence 999998877752 34799999887632 1 22348999999999999999996655553
No 8
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.084 Score=58.30 Aligned_cols=160 Identities=19% Similarity=0.153 Sum_probs=102.3
Q ss_pred HHHHHHHHHhhhhcCCCHHHHHHHHHHH-----HHHhhhhhhh--------------hHhhhhhhhHHH-HHHHHHHHhH
Q psy2630 79 VAGACMAMGLRFAGSANKHAYNVLINYC-----NLFTSLSAKS--------------IAELAGKFTIET-CLNVILLSLA 138 (472)
Q Consensus 79 iaGaclalGLkyAGt~n~~a~~~Ll~yl-----d~fl~~~~~~--------------~~~~~~r~t~~~-cl~v~~lsls 138 (472)
-.|..|++|+.|+||+|..+..+|+||. |...|..-.. ..+.+. .+++- .-.-.+++|+
T Consensus 533 Ry~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~lv~tvelLs-~shN~hVR~g~AvaLG 611 (926)
T COG5116 533 RYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVGTVELLS-ESHNFHVRAGVAVALG 611 (926)
T ss_pred hhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeEecCcchhhHHHHHhh-hccchhhhhhhHHHhh
Confidence 4688999999999999999999999983 3332221110 001111 11111 1122678899
Q ss_pred HHHccCCcHHHHHHHHHHHhcccC------------------CCCC---------------CCCCChhhHHHHHHHHHHH
Q psy2630 139 MVMSGTGDLEVLRICRYLRTRVES------------------RPPL---------------SSVISYGSYVAVHMALGLL 185 (472)
Q Consensus 139 ~VmAGTGdl~vlr~lR~L~~~~~~------------------~~~~---------------~~~~~YG~hmA~~mAlGlL 185 (472)
+..||||+--....|-.|...... ...+ .++-.=-..+-.-+|+|+.
T Consensus 612 iacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~glaklGA~laqGi~ 691 (926)
T COG5116 612 IACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHESGLAKLGAVLAQGIS 691 (926)
T ss_pred hhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhh
Confidence 999999999888887777654321 0000 0111112244566899999
Q ss_pred hhCCcccccCC-------ChHHHHHHHHHHccCCCCCCCChhhhHHHHHHHHHhhcCCeeEEEeeCCCCce
Q psy2630 186 FLGGGMYTLST-------SPPAIAALVTAFFPKFPTHSLDNRFHLQALRHLYVLAVEPRLLIPRDIDCGNL 249 (472)
Q Consensus 186 FLGgG~~Tl~t-------S~~aIA~Llia~yP~fP~~~~DN~~HLQAlRHlwvLAvepR~Lv~~Dvdt~~~ 249 (472)
--||-..|++- +-.+|++|++.+- -.|--+|-||-+|+.-|--++..|-.-.-|
T Consensus 692 ~aGGRNvti~l~natG~l~~~~ivGlv~Flq----------yWYWfPL~hf~SLsf~Pttvigi~~s~~~p 752 (926)
T COG5116 692 EAGGRNVTISLRNATGILSADRIVGLVLFLQ----------YWYWFPLIHFVSLSFLPTTVIGIRGSQAIP 752 (926)
T ss_pred hcCCceEEEEEecccCcccHHHHHHHHHHHH----------HHHHHHHHHHHhhhcCcceeecccccccCc
Confidence 98888777753 4588999988752 122334899999999998888887443333
No 9
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=93.96 E-value=0.063 Score=37.90 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=20.9
Q ss_pred HHHHhHHHHccCCcHHHHHHHHHHHh
Q psy2630 133 ILLSLAMVMSGTGDLEVLRICRYLRT 158 (472)
Q Consensus 133 ~~lsls~VmAGTGdl~vlr~lR~L~~ 158 (472)
+++++++++|||||-+++..|+..-.
T Consensus 2 A~lgLGl~~aGs~~~~~~~~L~~~l~ 27 (35)
T PF01851_consen 2 AILGLGLIYAGSGNEEVLDLLRPYLS 27 (35)
T ss_dssp HHHHHHHHTTTT--HHHHHHHHHHHC
T ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 57999999999999999999887643
No 10
>KOG1858|consensus
Probab=92.96 E-value=0.093 Score=62.98 Aligned_cols=113 Identities=14% Similarity=0.203 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhHHHHH-HHHHHHhHHHHccCCcHHHHHHHHHH
Q psy2630 78 IVAGACMAMGLRFAGSANKHAYNVLINYCNLFTSLSAKSIAELAGKFTIETCL-NVILLSLAMVMSGTGDLEVLRICRYL 156 (472)
Q Consensus 78 IiaGaclalGLkyAGt~n~~a~~~Ll~yld~fl~~~~~~~~~~~~r~t~~~cl-~v~~lsls~VmAGTGdl~vlr~lR~L 156 (472)
+--|..++|+--|-||++.+....|..|+..+++-.+. ...+..-+ -.+++++||+.+|||+-.+...|=.=
T Consensus 887 tSvgLLlGlsaS~~GtmD~ki~Kllsvhl~allp~ts~-------El~i~~~iQtAaIvGlGlLy~gS~h~~iaevL~~E 959 (1496)
T KOG1858|consen 887 TSVGLLLGLSASYRGTMDAKITKLLSVHLSALLPATST-------ELNIPLLIQTAAIVGLGLLYAGSAHRRIAEVLLAE 959 (1496)
T ss_pred eeHHHHhhhhHhhcCccchhHHHHHHHHHhhcCCCCcc-------cccCchhhhhhhhhhhhheecCcchHHHHHHHHHH
Confidence 34589999999999999999999999999988754221 11111112 23689999999999999988875544
Q ss_pred HhcccCCCCCCCCCChhhHHHHHHHHHHHhhCCcccccCCChH
Q psy2630 157 RTRVESRPPLSSVISYGSYVAVHMALGLLFLGGGMYTLSTSPP 199 (472)
Q Consensus 157 ~~~~~~~~~~~~~~~YG~hmA~~mAlGlLFLGgG~~Tl~tS~~ 199 (472)
-+|-... ++ .-..=|--+|.-.++|+..||.|...++-+|.
T Consensus 960 igr~~~~-e~-~~~rE~Y~laAG~SLGLi~LG~G~~~~g~~d~ 1000 (1496)
T KOG1858|consen 960 IGRPPNP-EN-VLEREGYKLAAGFSLGLINLGRGSNLPGMSDL 1000 (1496)
T ss_pred hcCCCCc-cc-chhhhhhhhhcCcccceeeeccCCCCcchhcc
Confidence 4443211 00 00234668899999999999999987776654
No 11
>KOG2062|consensus
Probab=91.22 E-value=0.41 Score=54.35 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhhhhhhhHhh----------hh----------hhhHHHH----HHH
Q psy2630 77 NIVAGACMAMGLRFAGSANKHAYNVLINYCNLFTSLSAKSIAEL----------AG----------KFTIETC----LNV 132 (472)
Q Consensus 77 ~IiaGaclalGLkyAGt~n~~a~~~Ll~yld~fl~~~~~~~~~~----------~~----------r~t~~~c----l~v 132 (472)
+.-+||.+|+||=+||.+.. +.+.|+++++. ...+...+ ++ |..+-.. -..
T Consensus 394 y~EGGalyAlGLIhA~hG~~-~~~yL~~~Lk~----~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEA 468 (929)
T KOG2062|consen 394 YKEGGALYALGLIHANHGRG-ITDYLLQQLKT----AENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEA 468 (929)
T ss_pred ccccchhhhhhccccCcCcc-HHHHHHHHHHh----ccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhH
Confidence 46899999999999999988 66666655543 33221110 00 1111111 123
Q ss_pred HHHHhHHHHccCCcHHHHHHHHHHH
Q psy2630 133 ILLSLAMVMSGTGDLEVLRICRYLR 157 (472)
Q Consensus 133 ~~lsls~VmAGTGdl~vlr~lR~L~ 157 (472)
+.+||+|+|.||++.+++.-++.-.
T Consensus 469 Agi~MGl~mlGt~~~eaiedm~~Ya 493 (929)
T KOG2062|consen 469 AGIAMGLLMLGTANQEAIEDMLTYA 493 (929)
T ss_pred HHHhhhhHhhCcCcHHHHHHHHHHh
Confidence 6899999999999999998555433
No 12
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.59 E-value=1.2 Score=49.57 Aligned_cols=64 Identities=23% Similarity=0.359 Sum_probs=44.8
Q ss_pred HHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHhHHHHccCCcHHHHHHHHHHHhcc
Q psy2630 81 GACMAMGLRFAGSANKHAYNVLINYCNLFTSLSAKSIAELAGKFTIETCLNVILLSLAMVMSGTGDLEVLRICRYLRTRV 160 (472)
Q Consensus 81 GaclalGLkyAGt~n~~a~~~Ll~yld~fl~~~~~~~~~~~~r~t~~~cl~v~~lsls~VmAGTGdl~vlr~lR~L~~~~ 160 (472)
|+|++|||--.||+|.+..+-|-..+.. ++. ..-..++++|+|+|-||+..+.+.-+|...+.+
T Consensus 430 G~~LGiGL~~MgSan~eiye~lKe~l~n-------------D~a---~~geAa~~gMGl~mLgt~s~eai~dm~tya~ET 493 (926)
T COG5116 430 GVCLGIGLINMGSANREIYEKLKELLKN-------------DRA---LLGEAAVYGMGLLMLGTWSVEAIEDMRTYAGET 493 (926)
T ss_pred HHHhhhcchhcccccHHHHHHHHHHHhc-------------chh---hhhhhhhhccceeeecCCCHHHHHHHHHHhcch
Confidence 7888888888888888776655332211 221 223457899999999999999998887765443
No 13
>PF09719 C_GCAxxG_C_C: Putative redox-active protein (C_GCAxxG_C_C); InterPro: IPR010181 This entry represents a putative redox-active protein of about 140 residues, with four perfectly conserved Cys residues. It includes a CGAXXG motif. Most members are found within one or two loci of transporter or oxidoreductase genes. A member from Geobacter sulfurreducens, located in a molybdenum transporter operon, has a TAT (twin-arginine translocation) signal sequence for Sec-independent transport across the plasma membrane, a hallmark of bound prosthetic groups such as FeS clusters.; PDB: 1H21_A.
Probab=69.92 E-value=7.5 Score=34.11 Aligned_cols=67 Identities=16% Similarity=0.321 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHhhhhcCC-CH----HHHHHHHHHHHHHhhhhhhhhHhhh-------hhhhHHHHHHHHHHHhHHH
Q psy2630 74 AYCNIVAGACMAMGLRFAGSA-NK----HAYNVLINYCNLFTSLSAKSIAELA-------GKFTIETCLNVILLSLAMV 140 (472)
Q Consensus 74 ay~~IiaGaclalGLkyAGt~-n~----~a~~~Ll~yld~fl~~~~~~~~~~~-------~r~t~~~cl~v~~lsls~V 140 (472)
.-|-.++|++++||+.|+-+. +. +.+.....+.+.|...........+ ...-.+.|..++.-+..++
T Consensus 38 ~~CGAl~Ga~~~lgl~~g~~~~~~~~~~~~~~~~~~l~~~F~~~~gs~~C~~l~~~~~~~~~~~~~~C~~~v~~aa~~~ 116 (120)
T PF09719_consen 38 GTCGALSGAVMALGLVYGRGDEDEESKEELYELAQELHERFKEEFGSTCCRELLGKEAFESPERKERCAKLVADAAEIL 116 (120)
T ss_dssp -B-HHHHHHHHHHHHHS-HHH-HHHHHHHHHHHH-------HB--S-SBHHHHHHH--TTSHHHHHHHHHHHHHHHHHH
T ss_pred CcccCcHHHHHHHHHHcCCcccchhHHHHHHHHHHHHhhhhHhhcCCcCChhhCCcccccCCCccCcCHHHHHHHHHHH
Confidence 457899999999999998766 33 3444455555666544433322222 2335667877776665544
No 14
>KOG4027|consensus
Probab=61.84 E-value=7.7 Score=36.83 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=16.6
Q ss_pred eeCCCCceEEEEEEEEEEcCce
Q psy2630 242 RDIDCGNLCYAHITVVYLNKEQ 263 (472)
Q Consensus 242 ~Dvdt~~~v~vpv~v~~~~~~~ 263 (472)
+|+++.-..+.||+|++|++.+
T Consensus 58 r~~~~~iv~n~Pievt~KstsP 79 (187)
T KOG4027|consen 58 RGADNQIVINLPIEVTLKSTSP 79 (187)
T ss_pred ccCCCceEEecceEEEeccCCC
Confidence 3777666678999999987653
No 15
>TIGR01909 C_GCAxxG_C_C C_GCAxxG_C_C family probable redox protein. This model represents a putative redox-active protein of about 140 residues, with four perfectly conserved Cys residues. It includes a CGAXXG motif. Most members are found within one or two loci of transporter or oxidoreductase genes. A member from Geobacter sulfurreducens, located in a molybdenum transporter operon, has a TAT (twin-arginine translocation) signal sequence for Sec-independent transport across the plasma membrane, a hallmark of bound prosthetic groups such as FeS clusters.
Probab=53.72 E-value=31 Score=30.72 Aligned_cols=68 Identities=18% Similarity=0.353 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCH----HHHHHHHHHHHHHhhhhhhhhHhhh-h------hhhHHHHHHHHHHHhHHHH
Q psy2630 74 AYCNIVAGACMAMGLRFAGSANK----HAYNVLINYCNLFTSLSAKSIAELA-G------KFTIETCLNVILLSLAMVM 141 (472)
Q Consensus 74 ay~~IiaGaclalGLkyAGt~n~----~a~~~Ll~yld~fl~~~~~~~~~~~-~------r~t~~~cl~v~~lsls~Vm 141 (472)
.-|-.++|++++||+.|+-..+. +.+...-.+.+.|.+....-....+ . +...+.|.+++.-+..+++
T Consensus 39 ~~CGAlsGa~~~lgl~~g~~~~~~~~~~~~~~~~el~~~F~~~~Gs~~C~~L~~~~~~~~~~~~~~C~~~v~~aa~~l~ 117 (120)
T TIGR01909 39 HICGALTGAVMALGLYFGTEGDGEQVNNTYALCAELYEKFREKNGSPNCGDLNPKKDLVSKEQRRKCIEIVSTAAETLL 117 (120)
T ss_pred CchhhHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHhCCcchHhhhccccccCCcccCcCHHHHHHHHHHHH
Confidence 36789999999999999632222 2344445566666554322211111 1 2234568888777766653
No 16
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=35.59 E-value=49 Score=23.90 Aligned_cols=29 Identities=38% Similarity=0.527 Sum_probs=22.0
Q ss_pred ccCCCCCCCCh------hhhHHHHHHHHHhhcCCe
Q psy2630 209 FPKFPTHSLDN------RFHLQALRHLYVLAVEPR 237 (472)
Q Consensus 209 yP~fP~~~~DN------~~HLQAlRHlwvLAvepR 237 (472)
+|..|.++.|. +.++.+|||...+-..||
T Consensus 1 ~p~~P~~Pg~~a~~eel~~Y~~~L~~YinlitR~R 35 (36)
T cd00126 1 MPSKPENPGDDASPEELRQYLAALREYINLITRPR 35 (36)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHccCC
Confidence 45666666655 368889999999998888
No 17
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=27.25 E-value=2.4e+02 Score=30.63 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=45.1
Q ss_pred HHHHhhhhcCCCHHHHHHHHHHHHHHhhhhhhhh--------------HhhhhhhhHHHHHHHH----------------
Q psy2630 84 MAMGLRFAGSANKHAYNVLINYCNLFTSLSAKSI--------------AELAGKFTIETCLNVI---------------- 133 (472)
Q Consensus 84 lalGLkyAGt~n~~a~~~Ll~yld~fl~~~~~~~--------------~~~~~r~t~~~cl~v~---------------- 133 (472)
++.-+|+++...++..+---++.+.|.+..-+|. .+..+-.++-.|+.++
T Consensus 299 l~a~lk~~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~~ 378 (438)
T COG3493 299 LVAILKAANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLMGF 378 (438)
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566788888888877777666666655543331 1234555566676553
Q ss_pred -----HHHhHHHHc---cCCcHHHHHHHHH
Q psy2630 134 -----LLSLAMVMS---GTGDLEVLRICRY 155 (472)
Q Consensus 134 -----~lsls~VmA---GTGdl~vlr~lR~ 155 (472)
++-.+++|| ||||++|+.-..+
T Consensus 379 YPVEaAI~aglC~a~~GGtGDvaVLsAa~R 408 (438)
T COG3493 379 YPVEAAITAGLCMANMGGTGDVAVLSAADR 408 (438)
T ss_pred CchHHHHHHhHHhcCCCCCCchHHhhhcch
Confidence 223345555 7999999976544
No 18
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=25.02 E-value=96 Score=22.45 Aligned_cols=29 Identities=38% Similarity=0.520 Sum_probs=21.3
Q ss_pred ccCCCCCCCCh------hhhHHHHHHHHHhhcCCe
Q psy2630 209 FPKFPTHSLDN------RFHLQALRHLYVLAVEPR 237 (472)
Q Consensus 209 yP~fP~~~~DN------~~HLQAlRHlwvLAvepR 237 (472)
||..|..+.|+ +.++-+|||...+-..||
T Consensus 1 ~p~~P~~Pg~~a~~e~l~~Y~~~L~~YinlitR~R 35 (36)
T smart00309 1 MPSKPERPGDDASPEDLRQYLAALREYINLITRPR 35 (36)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCC
Confidence 45556555554 467888999999988888
No 19
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=23.44 E-value=1.1e+02 Score=22.02 Aligned_cols=19 Identities=37% Similarity=0.446 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHhhcCCee
Q psy2630 220 RFHLQALRHLYVLAVEPRL 238 (472)
Q Consensus 220 ~~HLQAlRHlwvLAvepR~ 238 (472)
+.++.+|||.+.+...||.
T Consensus 18 ~~Y~~~L~~Y~~lvtRpRy 36 (36)
T PF00159_consen 18 AQYYAALRHYINLVTRPRY 36 (36)
T ss_dssp HHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHccCCC
Confidence 4788999999999999983
Done!