Query psy2630
Match_columns 472
No_of_seqs 180 out of 292
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 21:07:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ady_A RPN2, 26S proteasome re 99.2 3.4E-11 1.1E-15 136.4 9.0 143 77-250 627-780 (963)
2 4ady_A RPN2, 26S proteasome re 97.9 2.1E-05 7.1E-10 89.5 10.2 90 77-192 452-542 (963)
3 1m93_A Serine proteinase inhib 11.0 1E+02 0.0035 22.5 1.6 20 174-193 19-38 (55)
4 1f8p_A Neuropeptide Y (PNPY); 10.1 1.2E+02 0.004 21.2 1.4 20 218-237 16-35 (37)
5 1h21_A Split-soret cytochrome 9.6 1.3E+02 0.0044 29.0 2.1 32 75-106 85-116 (247)
6 1txp_A HnRNP C, heterogeneous 9.1 2.3E+02 0.0078 18.5 2.4 17 451-467 8-24 (28)
7 1qbf_A Peptide YY, PYY; PP-fol 8.1 1.2E+02 0.0042 21.1 0.9 19 220-238 18-36 (37)
8 3gdz_A Arginyl-tRNA synthetase 6.6 3.1E+02 0.01 22.6 2.9 22 273-294 70-91 (109)
9 3qqz_A Putative uncharacterize 5.4 1.2E+02 0.0041 28.8 -0.4 25 226-251 184-208 (255)
10 2rhf_A DNA helicase RECQ; HRDC 5.1 3E+02 0.01 20.9 1.9 19 143-161 1-19 (77)
No 1
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.17 E-value=3.4e-11 Score=136.37 Aligned_cols=143 Identities=17% Similarity=0.221 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHhHHHHccCCcH---HHHHHH
Q psy2630 77 NIVAGACMAMGLRFAGSANKHAYNVLINYCNLFTSLSAKSIAELAGKFTIETCLNVILLSLAMVMSGTGDL---EVLRIC 153 (472)
Q Consensus 77 ~IiaGaclalGLkyAGt~n~~a~~~Ll~yld~fl~~~~~~~~~~~~r~t~~~cl~v~~lsls~VmAGTGdl---~vlr~l 153 (472)
.|--|+++|+|+-.|||.+.+|.++|..+... . ....-.-+++|||+|++||.|. +|...+
T Consensus 627 ~VR~gAalALGli~aGn~~~~aid~L~~L~~D-------------~---d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l 690 (963)
T 4ady_A 627 HVRCGTAFALGIACAGKGLQSAIDVLDPLTKD-------------P---VDFVRQAAMIALSMILIQQTEKLNPQVADIN 690 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC-------------S---SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHccC-------------C---CHHHHHHHHHHHHHHhcCCccccchHHHHHH
Confidence 47889999999999999999999988665422 0 0011123689999999999999 999999
Q ss_pred HHHHhcccCCCCCCCCCChhhHHHHHHHHHHHhhCCcccccCC--------ChHHHHHHHHHHccCCCCCCCChhhhHHH
Q psy2630 154 RYLRTRVESRPPLSSVISYGSYVAVHMALGLLFLGGGMYTLST--------SPPAIAALVTAFFPKFPTHSLDNRFHLQA 225 (472)
Q Consensus 154 R~L~~~~~~~~~~~~~~~YG~hmA~~mAlGlLFLGgG~~Tl~t--------S~~aIA~Llia~yP~fP~~~~DN~~HLQA 225 (472)
|+|.+.+.. .+..-...|.+.+|+|++.+|||..|++. +..|+|+|++...- .||. .
T Consensus 691 ~~L~~~~~d-----k~~d~~~~fga~iAqGll~aG~~n~tis~~~s~~~~~~~~a~~Gl~~f~q~---------wyw~-p 755 (963)
T 4ady_A 691 KNFLSVITN-----KHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTGTLDTKSVVGLVMFSQF---------WYWF-P 755 (963)
T ss_dssp HHHHHHHHC-----SSSCHHHHHHHHHHHHHHTTGGGTEEECSBCTTTCCBCHHHHHHHHHHTTT---------TTCG-G
T ss_pred HHHHHHHhc-----ccccHHHHHHHHHHHHHHhcCCCceEEEeeeccCCCCCHHHHHHHHHHHHH---------HHHH-H
Confidence 999998862 23235678889999999999999999997 36899999987411 2331 2
Q ss_pred HHHHHHhhcCCeeEEEeeCCCCceE
Q psy2630 226 LRHLYVLAVEPRLLIPRDIDCGNLC 250 (472)
Q Consensus 226 lRHlwvLAvepR~Lv~~Dvdt~~~v 250 (472)
|-|+-+||..|||+|++|-+..++-
T Consensus 756 l~~~lsla~~Pt~li~l~e~dL~~p 780 (963)
T 4ady_A 756 LAHFLSLSFTPTTVIGIRGSDQAIP 780 (963)
T ss_dssp GGGGGGGGEEECBEEEEETTTTBEE
T ss_pred HHHHHHHhcCCcEEEEecccccCCC
Confidence 6788899999999999995255543
No 2
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.95 E-value=2.1e-05 Score=89.54 Aligned_cols=90 Identities=23% Similarity=0.299 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhhhhhhhhHhhhhhhhHHHHHHHHHHHhHHHHccCCcHHHHHHH-HH
Q psy2630 77 NIVAGACMAMGLRFAGSANKHAYNVLINYCNLFTSLSAKSIAELAGKFTIETCLNVILLSLAMVMSGTGDLEVLRIC-RY 155 (472)
Q Consensus 77 ~IiaGaclalGLkyAGt~n~~a~~~Ll~yld~fl~~~~~~~~~~~~r~t~~~cl~v~~lsls~VmAGTGdl~vlr~l-R~ 155 (472)
.|..|||+|||+-|+||+|+++.+.|...+.. +.. ..-..+++|||+||.||||-++++.| ..
T Consensus 452 ~ir~gAaLGLGla~~GS~~eev~e~L~~~L~d-------------d~~---~~~~~AalALGli~vGTgn~~ai~~LL~~ 515 (963)
T 4ady_A 452 VLLHGASLGIGLAAMGSANIEVYEALKEVLYN-------------DSA---TSGEAAALGMGLCMLGTGKPEAIHDMFTY 515 (963)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHT-------------CCH---HHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc-------------CCH---HHHHHHHHHHhhhhcccCCHHHHHHHHHH
Confidence 47789999999999999999999998765542 110 11147899999999999999999874 44
Q ss_pred HHhcccCCCCCCCCCChhhHHHHHHHHHHHhhCCccc
Q psy2630 156 LRTRVESRPPLSSVISYGSYVAVHMALGLLFLGGGMY 192 (472)
Q Consensus 156 L~~~~~~~~~~~~~~~YG~hmA~~mAlGlLFLGgG~~ 192 (472)
+.+..+ . .+-.. .-+|||++++|....
T Consensus 516 ~~e~~~------e--~vrR~--aalgLGll~~g~~e~ 542 (963)
T 4ady_A 516 SQETQH------G--NITRG--LAVGLALINYGRQEL 542 (963)
T ss_dssp HHHCSC------H--HHHHH--HHHHHHHHTTTCGGG
T ss_pred HhccCc------H--HHHHH--HHHHHHhhhCCChHH
Confidence 444322 2 23333 448999999988753
No 3
>1m93_A Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1
Probab=10.97 E-value=1e+02 Score=22.52 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHhhCCcccc
Q psy2630 174 SYVAVHMALGLLFLGGGMYT 193 (472)
Q Consensus 174 ~hmA~~mAlGlLFLGgG~~T 193 (472)
+=+.++.|++++++|.+.-|
T Consensus 19 SP~Si~~aLaml~~GA~g~T 38 (55)
T 1m93_A 19 SPPSISSVLTILYYGANGST 38 (55)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred CHHHHHHHHHHHHhhccchH
Confidence 56788999999999987543
No 4
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=10.09 E-value=1.2e+02 Score=21.19 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=15.6
Q ss_pred ChhhhHHHHHHHHHhhcCCe
Q psy2630 218 DNRFHLQALRHLYVLAVEPR 237 (472)
Q Consensus 218 DN~~HLQAlRHlwvLAvepR 237 (472)
|=..++-+|||...|-+.||
T Consensus 16 ela~Y~~~Lr~YinlvTRqR 35 (37)
T 1f8p_A 16 DLARYYSALRHYINLITRQR 35 (37)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 33467789999999887776
No 5
>1h21_A Split-soret cytochrome C; dimeric DI-heme cytochrome, stacked heme arrangement, novel fold, novel iron-sulfur centre; HET: HEC; 2.5A {Desulfovibrio desulfuricans} SCOP: a.138.1.3
Probab=9.61 E-value=1.3e+02 Score=28.97 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHH
Q psy2630 75 YCNIVAGACMAMGLRFAGSANKHAYNVLINYC 106 (472)
Q Consensus 75 y~~IiaGaclalGLkyAGt~n~~a~~~Ll~yl 106 (472)
-|-.++|++++||+.+..+......+-++.+.
T Consensus 85 ~CGALsGa~malGl~~g~~~~~~~~~el~~~~ 116 (247)
T 1h21_A 85 ICGALYGAAATFSLFWGRKEVHPMVNELFRWY 116 (247)
T ss_dssp BCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 46889999999999997665544556666655
No 6
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=9.07 E-value=2.3e+02 Score=18.51 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy2630 451 ALSITHKVIVIYVVLNG 467 (472)
Q Consensus 451 ~~~lk~~~~~~~~~~~~ 467 (472)
+..+|++|+.+...|.+
T Consensus 8 LtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 8 LTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56799999999988753
No 7
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=8.06 E-value=1.2e+02 Score=21.05 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHhhcCCee
Q psy2630 220 RFHLQALRHLYVLAVEPRL 238 (472)
Q Consensus 220 ~~HLQAlRHlwvLAvepR~ 238 (472)
..++-+|||...|-+.||.
T Consensus 18 a~Y~~~Lr~YinlvTR~Ry 36 (37)
T 1qbf_A 18 SRYYASLRHYLNLVTRQRY 36 (37)
T ss_dssp TTTTTGGGHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 4567789999999999883
No 8
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=6.57 E-value=3.1e+02 Score=22.57 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=18.5
Q ss_pred CCCCccceEEEcCCCeeeEEEE
Q psy2630 273 PELHLLEEVRINDKRYWPITFQ 294 (472)
Q Consensus 273 P~~~~I~~i~v~~~~Y~p~~id 294 (472)
+.-+.++++++.+|.|..+.++
T Consensus 70 ~~~~~i~~vevagpGFINf~l~ 91 (109)
T 3gdz_A 70 DLNGIANKVEIAGPGFINIFLD 91 (109)
T ss_dssp CCTTTEEEEEEETTTEEEEEEC
T ss_pred CcCCcEeEEEEeCCCeEEEEEC
Confidence 4445689999999999999997
No 9
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=5.43 E-value=1.2e+02 Score=28.85 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=21.2
Q ss_pred HHHHHHhhcCCeeEEEeeCCCCceEE
Q psy2630 226 LRHLYVLAVEPRLLIPRDIDCGNLCY 251 (472)
Q Consensus 226 lRHlwvLAvepR~Lv~~Dvdt~~~v~ 251 (472)
-.|||+|.-|.|+|+..| .+|+++.
T Consensus 184 tg~lliLS~~s~~L~~~d-~~g~~~~ 208 (255)
T 3qqz_A 184 KNTLLVLSHESRALQEVT-LVGEVIG 208 (255)
T ss_dssp TTEEEEEETTTTEEEEEC-TTCCEEE
T ss_pred CCeEEEEECCCCeEEEEc-CCCCEEE
Confidence 478999999999999999 5677654
No 10
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=5.15 E-value=3e+02 Score=20.95 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=13.8
Q ss_pred cCCcHHHHHHHHHHHhccc
Q psy2630 143 GTGDLEVLRICRYLRTRVE 161 (472)
Q Consensus 143 GTGdl~vlr~lR~L~~~~~ 161 (472)
|+.|..+++.||.+|....
T Consensus 1 ~~~d~~l~~~L~~wR~~~A 19 (77)
T 2rhf_A 1 GSHNADLSEALRELRRELM 19 (77)
T ss_dssp -CCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 6777788888888887764
Done!