Query psy2630
Match_columns 472
No_of_seqs 180 out of 292
Neff 5.3
Searched_HMMs 13730
Date Fri Aug 16 21:07:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2630.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2630hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s4ka_ a.35.1.6 (A:) Putative 6.9 43 0.0032 26.8 -0.2 17 219-235 4-20 (120)
2 d1qaza_ a.102.3.1 (A:) Alginat 5.9 8.4E+02 0.061 21.6 12.9 82 29-111 36-119 (351)
3 d1wyub1 c.67.1.7 (B:2-472) Gly 5.9 45 0.0033 32.4 -0.8 63 145-229 45-111 (471)
4 d3d85d1 b.1.1.4 (D:1-87) The p 5.8 65 0.0047 24.5 0.3 9 186-194 60-68 (87)
5 d2nwwa1 f.49.1.1 (A:12-416) Pr 5.1 4.1E+02 0.03 24.1 5.9 62 37-111 120-181 (405)
6 d1bkra_ a.40.1.1 (A:) beta-spe 5.0 1E+02 0.0075 23.4 1.0 53 197-249 32-89 (108)
7 d1g3nc1 a.74.1.1 (C:16-147) Vi 4.4 2.3E+02 0.017 21.8 2.8 27 74-100 76-102 (132)
8 d1f7ua3 d.67.2.1 (A:2-135) Arg 4.1 2.6E+02 0.019 22.1 2.9 57 235-295 54-115 (134)
9 d3ctda1 a.80.1.2 (A:258-420) U 4.1 8.6E+02 0.062 19.6 6.6 55 128-188 16-72 (163)
10 d1jvra_ a.61.1.2 (A:) HTLV-II 3.9 4E+02 0.029 21.3 3.9 36 399-434 17-54 (137)
No 1
>d1s4ka_ a.35.1.6 (A:) Putative cytoplasmic protein YdiL {Salmonella typhimurium [TaxId: 90371]}
Probab=6.92 E-value=43 Score=26.85 Aligned_cols=17 Identities=41% Similarity=0.767 Sum_probs=11.8
Q ss_pred hhhhHHHHHHHHHhhcC
Q psy2630 219 NRFHLQALRHLYVLAVE 235 (472)
Q Consensus 219 N~~HLQAlRHlwvLAve 235 (472)
|-+-|||+||...|.++
T Consensus 4 N~~ELQalR~if~mti~ 20 (120)
T d1s4ka_ 4 NALELQALRRIFDMTIE 20 (120)
T ss_dssp CHHHHHHHHHHTTCCHH
T ss_pred cHHHHHHHHHHHHHhHH
Confidence 45667888887776655
No 2
>d1qaza_ a.102.3.1 (A:) Alginate lyase A1-III {Sphingomonas sp., A1 [TaxId: 28214]}
Probab=5.91 E-value=8.4e+02 Score=21.59 Aligned_cols=82 Identities=11% Similarity=0.124 Sum_probs=52.6
Q ss_pred ccccCCCChHHHhhcCCccchhhhc--cCCCCCCCCCccCChhhhhhhHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHH
Q psy2630 29 LWDDVMPTVEWVESHIPSTIIPYCL--RKPRANSVEDEAVDFETMNQAYCNIVAGACMAMGLRFAGSANKHAYNVLINYC 106 (472)
Q Consensus 29 mWd~I~pt~eWi~s~iP~~i~~~~~--~~~~~~~~~~~~~d~e~~~qay~~IiaGaclalGLkyAGt~n~~a~~~Ll~yl 106 (472)
||.....+.+|-....|+.....-. .+-..........|.|.....| .=++-++..||+.|.-|++++..++.+..+
T Consensus 36 ~~~~~~~~~~~~~~~~p~P~t~~l~~~sky~~~d~~~~~~~~e~~~~~~-~d~~~~~~~L~~aY~~TGd~~YA~~Ai~~L 114 (351)
T d1qaza_ 36 LKAALPKEYDCTTEATPNPQQGEMVIPRRYLSGNHGPVNPDYEPVVTLY-RDFEKISATLGNLYVATGKPVYATCLLNML 114 (351)
T ss_dssp HHHHSCCCCCGGGCCCCCCCCSSCCCCCSBSSTTSSSBCTTHHHHHHHH-HHHHHHHHHHHHHHHHHCCTHHHHHHHHHH
T ss_pred HHHhhhhhhhhhcccCCCCccCcccccccccCCCCCCCCccchhhHHHH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6677777788888888877554210 0000111122345556443333 335678888999999999999999999888
Q ss_pred HHHhh
Q psy2630 107 NLFTS 111 (472)
Q Consensus 107 d~fl~ 111 (472)
+..-.
T Consensus 115 ~aWA~ 119 (351)
T d1qaza_ 115 DKWAK 119 (351)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88753
No 3
>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}
Probab=5.90 E-value=45 Score=32.40 Aligned_cols=63 Identities=14% Similarity=0.209 Sum_probs=36.4
Q ss_pred CcHHHHHHHHHHHhcccCCCCCCCCCChhhHHHHHHHHHHHhhCCcccccCCChHHHHHHHHHHccCC----CCCCCChh
Q psy2630 145 GDLEVLRICRYLRTRVESRPPLSSVISYGSYVAVHMALGLLFLGGGMYTLSTSPPAIAALVTAFFPKF----PTHSLDNR 220 (472)
Q Consensus 145 Gdl~vlr~lR~L~~~~~~~~~~~~~~~YG~hmA~~mAlGlLFLGgG~~Tl~tS~~aIA~Llia~yP~f----P~~~~DN~ 220 (472)
...|++|.++.|.++... . -..+.|||+|.+-..++ +--.++++|=-| |...+-|
T Consensus 45 sE~El~r~~~~la~kN~~-----~------------~~~~~~lG~~~~hy~P~---v~~~~~~~~TaYTPYQPaEiSQG- 103 (471)
T d1wyub1 45 DELTLVRHYTGLSRRQVG-----V------------DTTFYPLGSCTMKYNPK---LHEEAARLFADLHPYQDPRTAQG- 103 (471)
T ss_dssp CHHHHHHHHHHHHTTCCC-----T------------TTSCCCBTTTCCCCCCH---HHHHHHHTTSSCCTTSCGGGCHH-
T ss_pred CHHHHHHHHHHHHhCCCC-----c------------cccccCCccccCccCcc---hhhhHHHHHhccCCCCCHHHHHH-
Confidence 678999999999877531 1 12367889887666654 222233455444 3222333
Q ss_pred hhHHHHHHH
Q psy2630 221 FHLQALRHL 229 (472)
Q Consensus 221 ~HLQAlRHl 229 (472)
-||++--|
T Consensus 104 -~LQalfEf 111 (471)
T d1wyub1 104 -ALRLMWEL 111 (471)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHH
Confidence 47775544
No 4
>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.77 E-value=65 Score=24.52 Aligned_cols=9 Identities=44% Similarity=0.652 Sum_probs=5.5
Q ss_pred hhCCccccc
Q psy2630 186 FLGGGMYTL 194 (472)
Q Consensus 186 FLGgG~~Tl 194 (472)
|+|||.||=
T Consensus 60 ~~~aGnYTC 68 (87)
T d3d85d1 60 FGDAGQYTC 68 (87)
T ss_dssp GGGCEEEEE
T ss_pred ccCCcceeE
Confidence 566666663
No 5
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=5.10 E-value=4.1e+02 Score=24.08 Aligned_cols=62 Identities=10% Similarity=0.151 Sum_probs=37.4
Q ss_pred hHHHhhcCCccchhhhccCCCCCCCCCccCChhhhhhhHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHhh
Q psy2630 37 VEWVESHIPSTIIPYCLRKPRANSVEDEAVDFETMNQAYCNIVAGACMAMGLRFAGSANKHAYNVLINYCNLFTS 111 (472)
Q Consensus 37 ~eWi~s~iP~~i~~~~~~~~~~~~~~~~~~d~e~~~qay~~IiaGaclalGLkyAGt~n~~a~~~Ll~yld~fl~ 111 (472)
.+++.+.+|+.+-+.-. +.+.+....++++-|.+++...+..+....++.+.+.++.|.+.+
T Consensus 120 ~~~l~~~iP~Ni~~al~-------------~~~~l~vi~fail~Gial~~~~~~~~~~~~~~~~~l~~~~~~l~~ 181 (405)
T d2nwwa1 120 VHILLDIVPTNPFGALA-------------NGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAE 181 (405)
T ss_dssp HHHHGGGSCSCHHHHHH-------------SCCHHHHHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHhh-------------cCCccchhhHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHHHH
Confidence 46666777765553311 112233455577777777666666666667777788877776643
No 6
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.01 E-value=1e+02 Score=23.37 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHccCC-CCCCCChhhhHHHHHHHHHhhcC----CeeEEEeeCCCCce
Q psy2630 197 SPPAIAALVTAFFPKF-PTHSLDNRFHLQALRHLYVLAVE----PRLLIPRDIDCGNL 249 (472)
Q Consensus 197 S~~aIA~Llia~yP~f-P~~~~DN~~HLQAlRHlwvLAve----pR~Lv~~Dvdt~~~ 249 (472)
+..+.++|+=.+.|-. +....+.+...+.++..--.|-+ |+++-+-|+.+++|
T Consensus 32 DG~af~aLi~~~~P~~~~~~~l~~~~~~~~~~~a~~~ae~~lgip~ll~~ed~~~~~p 89 (108)
T d1bkra_ 32 DGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVDHP 89 (108)
T ss_dssp TSHHHHHHHHHHCGGGCCGGGCCTTCHHHHHHHHHHHHHHHHCCCCCCCHHHHSSSSC
T ss_pred CcHHHHHHHHHHCcCcccHHhcccCCHHHHHHHHHHHHHHhcCCCCcCCHHhccCCCC
Confidence 4588999999999965 43434444445555555555544 99999999877764
No 7
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=4.35 E-value=2.3e+02 Score=21.84 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCHHHHH
Q psy2630 74 AYCNIVAGACMAMGLRFAGSANKHAYN 100 (472)
Q Consensus 74 ay~~IiaGaclalGLkyAGt~n~~a~~ 100 (472)
..+..+|.+|+-|+-|+-.+....+.+
T Consensus 76 ~~lqLia~tcl~iAsK~ee~~~~~~~~ 102 (132)
T d1g3nc1 76 EHFQKTGSACLLVASKLRSLTPISTSS 102 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCHHH
Confidence 356899999999999998776655443
No 8
>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.08 E-value=2.6e+02 Score=22.10 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=33.1
Q ss_pred CCeeEEEeeCCCCceEEEEEE-EEEEcCce----eEEecccccCCCCccceEEEcCCCeeeEEEEc
Q psy2630 235 EPRLLIPRDIDCGNLCYAHIT-VVYLNKEQ----FTAKAPCLLPELHLLEEVRINDKRYWPITFQK 295 (472)
Q Consensus 235 epR~Lv~~Dvdt~~~v~vpv~-v~~~~~~~----~~~~tPcLLP~~~~I~~i~v~~~~Y~p~~id~ 295 (472)
++.+=.|.+.|-|... +|+- +..+..++ .++.. -+|..+.|+++++.|| |-.+.|+-
T Consensus 54 ~~~le~p~~~d~GDla-~~~p~lk~kgknP~eiA~ela~--~l~~~~~i~~v~~~Gp-FINf~l~~ 115 (134)
T d1f7ua3 54 FPALEWTNTMERGDLL-IPIPRLRIKGANPKDLAVQWAE--KFPCGDFLEKVEANGP-FIQFFFNP 115 (134)
T ss_dssp GGGCEECSSGGGCSEE-EEGGGGCCTTCCHHHHHHHHHH--TCCCTTTEEEEEEETT-EEEEEECH
T ss_pred HHHhhCCCCCcccchH-HHHHHHHHcCCCHHHHHHHHHH--HcCCCCceeeEEeeCC-eEEEEECH
Confidence 3555556666666543 3331 12222222 11111 2566677999999999 99999873
No 9
>d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]}
Probab=4.05 E-value=8.6e+02 Score=19.56 Aligned_cols=55 Identities=13% Similarity=0.002 Sum_probs=40.9
Q ss_pred HHHHHHHHHhHHHHccCCcHH-HHHH-HHHHHhcccCCCCCCCCCChhhHHHHHHHHHHHhhC
Q psy2630 128 TCLNVILLSLAMVMSGTGDLE-VLRI-CRYLRTRVESRPPLSSVISYGSYVAVHMALGLLFLG 188 (472)
Q Consensus 128 ~cl~v~~lsls~VmAGTGdl~-vlr~-lR~L~~~~~~~~~~~~~~~YG~hmA~~mAlGlLFLG 188 (472)
...+.++.=++-.+.|-.|.+ +.|| +|...+.+| ...+-.-.+|++....+-++|
T Consensus 16 SD~dAAly~larml~~Gedp~~i~RRli~~AsEDIG------lAdp~Al~~a~aa~~a~~~iG 72 (163)
T d3ctda1 16 SDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG------LADPNAIVVVQSCCDAFDRVG 72 (163)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG------GGSTTHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhc------ccChhHHHHHHHHHHHHHHhC
Confidence 344667777777777766887 5566 677777778 445677888888888999998
No 10
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=3.92 E-value=4e+02 Score=21.27 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=28.6
Q ss_pred cccchH--HHHHHHHHhcCCCCCCcchhhhHHHHHHHH
Q psy2630 399 LTIVPI--WLSIIEALSRLPSPLSSYEIWQIKLLQAKV 434 (472)
Q Consensus 399 ~~~L~~--~~~l~~~~~~~~~~~~~~~lw~lkl~~~~~ 434 (472)
|.+|.+ |+.+.++-.+++-.++.+|.-|||-.+...
T Consensus 17 PrGls~hhWLNfLQaAyRLqPgPS~~DF~qLr~flkla 54 (137)
T d1jvra_ 17 PRGLSTHHWLNFLQAAYRLQPGPSDFDFQQLRRFLKLA 54 (137)
T ss_dssp SCSSTHHHHHHHHHHHHHSSCCCSTTTHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHH
Confidence 455554 677788889999999999999999777554
Done!