RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2630
         (472 letters)



>gnl|CDD|216739 pfam01851, PC_rep, Proteasome/cyclosome repeat. 
          Length = 35

 Score = 31.6 bits (73), Expect = 0.048
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 81  GACMAMGLRFAGSANKHAYNVLINY 105
           GA +A+GL  AGS N+ A  +L+ Y
Sbjct: 1   GAILALGLIHAGSGNEEALELLLPY 25


>gnl|CDD|217925 pfam04145, Ctr, Ctr copper transporter family.  The redox active
           metal copper is an essential cofactor in critical
           biological processes such as respiration, iron
           transport, oxidative stress protection, hormone
           production, and pigmentation. A widely conserved family
           of high-affinity copper transport proteins (Ctr
           proteins) mediates copper uptake at the plasma membrane.
           A series of clustered methionine residues in the
           hydrophilic extracellular domain, and an MXXXM motif in
           the second transmembrane domain, are important for
           copper uptake. These methionine probably coordinate
           copper during the process of metal transport.
          Length = 102

 Score = 29.0 bits (66), Expect = 1.5
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 13/84 (15%)

Query: 103 INYCNLFTSLSAKSIAELAGKFTIETCLNVILLSLAMVMSGTGDLEVLRICRYLRTRVES 162
            + C LF+     +    AG     +C+ + LL++          E L+  R    R+  
Sbjct: 10  KDTCVLFSGWHITTAGMYAG-----SCIAIFLLAIL--------YEGLKRVRRKLERMSL 56

Query: 163 RPPLSSVISYGSYVAVHMALGLLF 186
              L   + +   V +   L L+ 
Sbjct: 57  FQHLIRALLHFLQVGLSYLLMLIV 80


>gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional.
          Length = 639

 Score = 29.5 bits (66), Expect = 3.9
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 16/75 (21%)

Query: 110 TSLSAKSIAELAGKFTIETCLNVILLSLAMVMSGTGDLEVLRICRYLRTRVESRPPLSSV 169
           TS++A  +A +A                ++++S    L    + R L+  +   P L + 
Sbjct: 556 TSMAAPHVAAIA----------------SLILSINPSLSYEEVIRILKESIVQLPSLKNK 599

Query: 170 ISYGSYVAVHMALGL 184
           + +G Y+ +H A+ L
Sbjct: 600 VKWGGYLDIHHAVNL 614


>gnl|CDD|184849 PRK14847, PRK14847, hypothetical protein; Provisional.
          Length = 333

 Score = 29.6 bits (66), Expect = 3.9
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 18/78 (23%)

Query: 110 TSLSAKSIAELAGKFTIETCL--------NVILLSLAMVMSGTG--------DLEVLRIC 153
           T+++A  +A LAG   IE CL        NV L++LA+ +   G        D+  LR C
Sbjct: 253 TAVAAAELAVLAGAERIEGCLFGNGERTGNVDLVALALNLERQGIASGLDFRDMAALRAC 312

Query: 154 --RYLRTRVESRPPLSSV 169
                +  ++   P + +
Sbjct: 313 VSECNQLPIDVFHPYAWL 330


>gnl|CDD|237078 PRK12366, PRK12366, replication factor A; Reviewed.
          Length = 637

 Score = 29.6 bits (67), Expect = 4.4
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 8/51 (15%)

Query: 115 KSIAELAGKFTIETCLNV----ILLSLAMVMSGTGDLEVLRICRYLRTRVE 161
           K + E+ G++  E C  V    +L+    +  GTG +     CR+    VE
Sbjct: 540 KRVEEVDGEYICEFCGEVEPNELLMLNFTLDDGTGTIN----CRFYGKNVE 586


>gnl|CDD|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system
           protein KefC; Provisional.
          Length = 621

 Score = 29.2 bits (66), Expect = 5.7
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%)

Query: 182 LGLLFLGGGMY----TLSTSPPAIAALVTAF 208
           LGL F+  GM     TL  +P  I  L+  F
Sbjct: 274 LGLFFIAVGMSIDFGTLLENPLRILILLLGF 304


>gnl|CDD|197357 cd10049, Reelin_repeat_5_subrepeat_2, C-terminal subrepeat of
           tandem repeat unit 5 of reelin and related proteins.
           Reelin is an extracellular glycoprotein involved in
           neuronal development, specifically in the brain cortex.
           It contains 8 tandemly repeated units, each of which is
           composed of two highly similar subrepeats and a central
           EGF domain. This model characterizes the C-terminal
           subrepeat, which directly contacts the N-terminal
           subrepeat and the EGF domain in a compact arrangement.
           Consecutive reelin repeat units are packed together to
           form an overall rod-like molecular structure. Reelin
           repeats 5 and 6 are reported to interact with neuronal
           receptors, the apolipoprotein E receptor 2 (ApoER2) and
           the very-low-density lipoprotein receptor (VLDLR),
           triggering a signaling cascade upon binding and
           subsequent tyrosine phosphorylation of the cytoplasmic
           disabled-1 (Dab1).
          Length = 150

 Score = 27.9 bits (62), Expect = 6.4
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 317 RTGCLSYLEDPHGYKTMLAHTLTINKTIAWSVLEESIFSFSSD 359
           R GC   + DP     +L ++L  N  + WS+L+E +FS SS+
Sbjct: 67  RLGCGKGVPDPRSQPVLLQYSL--NGGLTWSLLQEFLFSNSSN 107


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0840    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,994,766
Number of extensions: 2356093
Number of successful extensions: 2493
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2490
Number of HSP's successfully gapped: 19
Length of query: 472
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 372
Effective length of database: 6,502,202
Effective search space: 2418819144
Effective search space used: 2418819144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.1 bits)