RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2630
(472 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.0 bits (160), Expect = 1e-11
Identities = 70/466 (15%), Positives = 132/466 (28%), Gaps = 139/466 (29%)
Query: 32 DVMPTVEWVESHIPSTIIPYCLRKPRANSVEDEAVDFETMNQAYCNIVAGACMAMGLRFA 91
D + +S + I + + ++V F T+ +V +F
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSK--DAVSGTLRLFWTLLSKQEEMVQ--------KFV 83
Query: 92 GSANKHAYNVLINYCNLFTSLSAKSIAELAGKFTIETCLNVILLSLAMVMSGTGDLEVLR 151
+ INY L + + + + + D +V
Sbjct: 84 EEVLR------INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY----------NDNQVFA 127
Query: 152 ICRYLRTRVES----RPPLSSVISYGSYVAVH-MALGLLFLGGGMYTLSTSPPAIAAL-- 204
+Y +R++ R L + V + + G G + A+
Sbjct: 128 --KYNVSRLQPYLKLRQALLELRP-AKNVLIDGVL------GSGKTWV-----ALDVCLS 173
Query: 205 --VTAFFPKFPTH--SLDNRF-------HLQALRHLYVLAVEPRLLIPRDIDCGNLCYAH 253
V F +L N LQ L + ++P D H
Sbjct: 174 YKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQ----IDPNWTSRSDHSSNIKLRIH 228
Query: 254 ITVVYLNKEQFTAKAP-CLLPELHLLEEVRINDKRYWPITFQKNRNWKQLQYLLLGQKCI 312
L + + CLL +L V+ + + W
Sbjct: 229 SIQAELRRLLKSKPYENCLL----VLLNVQ--NAKAW--------------------NAF 262
Query: 313 DIKQRTGCLSYLEDPHGYKTMLAHTLTINKTIAWSVLEESIFSFSSDPAIIKFTESFFNV 372
++ C K +L T K + + + S D + T
Sbjct: 263 NL----SC----------KILL---TTRFKQVTDFLSAATTTHISLDHHSMTLTPD---- 301
Query: 373 INVGSKNEYESK-LLIKVI---YESLIRDKLTIVPIWLSIIEALSRLPSPLSSYEIWQIK 428
E K LL+K + + L R+ LT P LSII + L++++ W+
Sbjct: 302 ---------EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES--IRDGLATWDNWK-H 349
Query: 429 LLQAKVKSARDLSSSELVAADM-----ALS-------ITHKVIVIY 462
+ K+ + + S + L A+ LS I ++ +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Score = 43.3 bits (101), Expect = 1e-04
Identities = 65/471 (13%), Positives = 125/471 (26%), Gaps = 187/471 (39%)
Query: 16 DFLMLRMIARGLILWDDVMPTVEWVESHIPSTIIPYCLRKPRANSVEDEAVDFETMNQAY 75
L + L++ +V A +
Sbjct: 236 RLLKSKPYENCLLVLLNV-----QNAKAW-------------------NAFNLS------ 265
Query: 76 CNIVAGACMAMGLRFAGSANKHAYNVLINYCNLFTSLSAKSIAELAGKFTIETCLNVILL 135
C I L T+ + L+ T L+ +
Sbjct: 266 CKI-----------------------------LLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 136 SLAMVMSGTGDLEVLRIC-RYLRTRVESRPPLSSVISYGSYVAVHMALGLLFLGGGMYTL 194
+L T D EV + +YL R + P L
Sbjct: 297 TL------TPD-EVKSLLLKYLDCRPQDLPRE--------------------------VL 323
Query: 195 STSPPAIAALVTAFFPKFPTH------------------SLDNRFHLQA--LRHLYV-LA 233
+T+P + +++ SL+ L+ R ++ L+
Sbjct: 324 TTNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV---LEPAEYRKMFDRLS 379
Query: 234 VEPR-LLIPRDIDCGNLCYAHITVVYLNKEQFTAKAPCLLPELH---LLEE------VRI 283
V P IP + L +++ + + ++ +LH L+E+ + I
Sbjct: 380 VFPPSAHIPTIL----LS-----LIWFDVIKSDVMV--VVNKLHKYSLVEKQPKESTISI 428
Query: 284 NDKRYWPITFQKNRNWKQLQYLLLGQKCID--IKQRTGCLSYLEDPH---------GYKT 332
Y + K N L + +D +T L P+ G+
Sbjct: 429 PS-IYLELK-VKLENEYALH-----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-- 479
Query: 333 MLAHTLTINKTIAWSVLEESIFSFSSDPAIIKFTESFFNVINVGSKNEYESKLL-----I 387
H I ++ F +F E + + + +L +
Sbjct: 480 ---HLKNIEHPERMTLFRMVFLDF-------RFLEQ--KIRHDSTAWNASGSILNTLQQL 527
Query: 388 KVIYESLIRDKLTIVPIWLSIIEALSR-LPSP-----LSSY-EIWQIKLLQ 431
K Y+ I D P + ++ A+ LP S Y ++ +I L+
Sbjct: 528 K-FYKPYICDN---DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Score = 33.3 bits (75), Expect = 0.21
Identities = 23/212 (10%), Positives = 58/212 (27%), Gaps = 63/212 (29%)
Query: 243 DIDCGNLCYAHITVVYLNKEQFTAKAPCLLPELHLLEEVR--INDKRYWPITFQKNRNWK 300
D + G Y + ++ + ++ F C + + + ++ + I K+
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDC----KDVQDMPKSILSKEEIDHIIMSKDA--V 61
Query: 301 QLQYLLLGQKCIDIKQRTGCLSYLEDPHGYKTMLAHTLTINKTIAWSVLEESIFSFSSDP 360
L + KQ ++E+ + + L I
Sbjct: 62 SGTLRLFW--TLLSKQEEMVQKFVEE------------VLRINYKF--LMSPI------- 98
Query: 361 AIIKFTESFFNVINVGSKNEYESKLLIKVIYESLIRDKLTIVPIWLSIIEALSRLPSPLS 420
K E ++ +Y RD+ L +
Sbjct: 99 -----------------KTEQRQPSMMTRMYIEQ-RDR-------------LYNDNQVFA 127
Query: 421 SYEIWQIKLLQAKVKSARDLSSSELVAAD-MA 451
Y + +++ ++ +L ++ V D +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 2e-04
Identities = 82/467 (17%), Positives = 142/467 (30%), Gaps = 170/467 (36%)
Query: 116 SIAELAGKF--------------TIETCLNVIL-------L------SLAMVMSGTGDLE 148
+ AEL GKF + LN+ L L +LA + D
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 149 VLR---ICR-YLRTRVESRPPLSSVISYGSYVAV---HMALGLLFLGG-G---------- 190
+++ + + Y+ R+ ++ P + + AV + L +F GG G
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF-GGQGNTDDYFEELR 174
Query: 191 -MYTLSTSPPAIAALVTAFFPKFPTHSLDNRFHLQALRHLYVLAVEPRLLIPR--DI--- 244
+Y T + L+ +F + L L ++ + + +I
Sbjct: 175 DLYQ--TYHVLVGDLI--------------KFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 245 --------DCGNLCYAHITVVYLNKEQF-----TAKAPCLLPELHLLEEVR--------- 282
D L I+ + Q TAK P L ++
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG-ELRSYLKGATGHSQGL 277
Query: 283 -----INDKRYWPITFQKNRNWKQLQYLL-LGQKCIDIKQRTGCLS--------YLEDPH 328
I + W +F + K + L +G +C + S LE+
Sbjct: 278 VTAVAIAETDSWE-SFFVSVR-KAITVLFFIGVRC---YEAYPNTSLPPSILEDSLENNE 332
Query: 329 GYKT-MLA-HTLTINKTIAWSVLEESIFSF----SSDPAI-IKFTESFFNVINVGSKNEY 381
G + ML+ LT + +++ + + + I S N G+KN
Sbjct: 333 GVPSPMLSISNLTQEQ------VQDYVNKTNSHLPAGKQVEI----SLVN----GAKN-- 376
Query: 382 ESKLLIKVI---YESLIRDKLTI----VPIWL--SIIEALSR--------LP--SPL-SS 421
V+ +SL LT+ P L S I R LP SP S
Sbjct: 377 ------LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 422 YEIWQIKLLQAKVKSARDLSSSELVAADMALSITHKVIVIYVVLNGQ 468
L+ A +DL + + + I +Y +G
Sbjct: 431 L------LVPASDLINKDLVKNNVSFNAKDIQIP-----VYDTFDGS 466
Score = 42.0 bits (98), Expect = 5e-04
Identities = 55/319 (17%), Positives = 89/319 (27%), Gaps = 118/319 (36%)
Query: 225 ALRHLYVLA---VEPRLLIPRDIDCGNLCYAHITVVYLNKEQFTAKAPCLLPELHLLEEV 281
+ R L L+ +E LL+P + + + +EQF P +E
Sbjct: 5 STRPL-TLSHGSLEHVLLVPTAS------FFIASQL---QEQFNKILPEPTEGFAADDE- 53
Query: 282 RINDKRYWPIT-------FQKNRNWKQLQYLLLGQKCIDIKQRTGCL---------SYL- 324
P T F L Y+ + + Q L YL
Sbjct: 54 --------PTTPAELVGKF--------LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 325 -EDPHGYKTMLAHTLTINKTIAWSVLEESIFSF-----SSDPAIIKFTES-FFNVINV-- 375
D H LA L +E I ++ + K + S F +
Sbjct: 98 GNDIH----ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 376 ----------GSKNEY--ESKLLIKV--IYESLIRD----------KLTIVPI------- 404
G+ ++Y E L + Y L+ D +L +
Sbjct: 154 AQLVAIFGGQGNTDDYFEE---LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 405 -------WLSIIEALSRLPSP--LSSYEI-W-QIKLLQ-------AKVKSARDLSSSELV 446
WL E S P L S I I ++Q AK+ + EL
Sbjct: 211 QGLNILEWL---ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL---GFTPGELR 264
Query: 447 AADMALSITHKVIVIYVVL 465
+ + + +V V +
Sbjct: 265 SYLKGATGHSQGLVTAVAI 283
Score = 38.5 bits (89), Expect = 0.005
Identities = 59/333 (17%), Positives = 94/333 (28%), Gaps = 129/333 (38%)
Query: 84 MAMGLRFAGS---------ANKHAYNVL------INYCN------LFTSLSAKSIAELAG 122
M M L S A+ H + I N F K I E
Sbjct: 1631 MGMDLY-KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 123 KFTIETCLNVILLSLAMVMSGTGDLEVLRICRYLRTRVESRPPLSSVISYGSYVAVHMAL 182
ET ++ G L+ +I + E +S
Sbjct: 1690 AMIFETIVD-------------GKLKTEKIFK------EINEHSTSYTFRSEK------- 1723
Query: 183 GLLFLGGGMYTLSTSPPAIAALVTAFF---------PKFPT---HSLDNRFHLQ----AL 226
GLL T T PA+ + A F P T HSL AL
Sbjct: 1724 GLLSA-----TQFTQ-PALTLMEKAAFEDLKSKGLIPADATFAGHSL-------GEYAAL 1770
Query: 227 RHL-YVLAVEP--RLL----------IPRDIDCGNLCYAHITV------VYLNKEQFTAK 267
L V+++E ++ +PRD + G Y I + ++E
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAVPRD-ELGRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 268 APCLLPELHLLEEVRINDKRYWPITFQKNRNWKQLQYLLLGQKCIDIKQRTGCLSYLEDP 327
+ L E+ +N N + QY+ G + T L+++
Sbjct: 1830 VERVGKRTGWLVEI-VNY------------NVENQQYVAAGDL-RALDTVTNVLNFI--- 1872
Query: 328 HGYKTM------LAHTLTINKTIAWSVLEESIF 354
K L +L++ + +E +F
Sbjct: 1873 ---KLQKIDIIELQKSLSLEE------VEGHLF 1896
Score = 33.9 bits (77), Expect = 0.13
Identities = 34/187 (18%), Positives = 53/187 (28%), Gaps = 64/187 (34%)
Query: 108 LFTSLSAKSIAELAGKF----TIETCLN---------------VI------LLSLAMVMS 142
LF ++ + A+L F + +I L L
Sbjct: 145 LFRAVGEGN-AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 143 GTGDL--EVLRICRYLRTRVESRP------------PLSSVISYGSYVAVHMALGL---- 184
+ + L I +L + P PL VI YV LG
Sbjct: 204 DAEKVFTQGLNILEWLENP-SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 185 LF--LGGGMYTLSTSPPAIAALVTAFFPKFPTHSLDNRFH---LQALRHLYVLAVE---- 235
L L G S + A+ A T S ++ F +A+ L+ + V
Sbjct: 263 LRSYLKG---ATGHSQGLVTAVAIA-----ETDSWES-FFVSVRKAITVLFFIGVRCYEA 313
Query: 236 -PRLLIP 241
P +P
Sbjct: 314 YPNTSLP 320
Score = 28.1 bits (62), Expect = 9.1
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Query: 2 NAPNTQYL-------LDFVCP--DFLMLRMIARGLILWDDVMPTVEWVESHI 44
N N QY+ LD V +F+ L+ I I+ ++E VE H+
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVLNFIKLQKID---IIELQKSLSLEEVEGHL 1895
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 40.2 bits (93), Expect = 0.002
Identities = 29/182 (15%), Positives = 60/182 (32%), Gaps = 56/182 (30%)
Query: 77 NIVAGACMAMGLRFAGSANKHAYNVLI---NYCNLFTSLSAKSIAELAGKFTIETCLNVI 133
++ G A+G+ AG + A +VL F +A
Sbjct: 627 HVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAA------------------- 667
Query: 134 LLSLAMVMSGTGDLEVLRICRYLRTRVESRPPLSSVIS--YGSYVA---VHMALGLLFLG 188
+++L+M++ + ++ + SVI+ + +A +A G++ G
Sbjct: 668 MIALSMILIQQTEKLNPQVADINKN-------FLSVITNKHQEGLAKFGACVAQGIMNAG 720
Query: 189 GGMYTLS--------TSPPAIA--ALVTAFFPKFPTHSLDNRFHLQALRHLYVLAVEPRL 238
G T+ ++ + + F+ FP L H L+ P
Sbjct: 721 GRNVTIQLENADTGTLDTKSVVGLVMFSQFWYWFP------------LAHFLSLSFTPTT 768
Query: 239 LI 240
+I
Sbjct: 769 VI 770
Score = 34.0 bits (77), Expect = 0.13
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 27/112 (24%)
Query: 78 IVAGACMAMGLRFAGSANKHAYNVLINYCNLFTSLSAKSIAELAGKFTIETCLNVILLSL 137
++ GA + +GL GSAN Y L S ++ A L +
Sbjct: 453 LLHGASLGIGLAAMGSANIEVYEALKEVLYN-DSATSGEAAALG---------------M 496
Query: 138 AMVMSGTGDLEVL-RICRYLRTRVESRPPLSSVISYGSYVAVHMALGLLFLG 188
+ M GTG E + + Y + + +A + L L+ G
Sbjct: 497 GLCMLGTGKPEAIHDMFTYSQETQHG--------NITRGLA--VGLALINYG 538
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.21
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 11/35 (31%)
Query: 426 QIKLLQAKVKSARDLSSSELVAADM--ALSITHKV 458
+K LQA +K L A D AL+I +
Sbjct: 21 ALKKLQASLK---------LYADDSAPALAIKATM 46
Score = 29.1 bits (64), Expect = 1.7
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 9/31 (29%)
Query: 339 TINKTIAWSVLEESIFSFSSD--PAI-IKFT 366
+ K L+ S+ ++ D PA+ IK T
Sbjct: 21 ALKK------LQASLKLYADDSAPALAIKAT 45
Score = 28.8 bits (63), Expect = 2.1
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 19/46 (41%)
Query: 300 KQLQYLLLGQKCIDIKQRTGCLS-YLEDPHGYKTMLAHTLTINKTI 344
KQ +K+ L Y +D A L I T+
Sbjct: 19 KQ-----------ALKKLQASLKLYADDS-------APALAIKATM 46
>3arc_B Photosystem II core light harvesting protein CP47; PSII,
membrane-protein complex, transmembrane alpha-helix, E
transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD
LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus
vulcanus} PDB: 3bz1_B* 1s5l_B* 1w5c_B* 2axt_B* 3bz2_B*
3kzi_B* 3prq_B* 3prr_B* 3a0b_B* 3a0h_B* 1izl_B*
Length = 504
Score = 29.0 bits (64), Expect = 4.1
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 138 AMVMSGTGDLEVLRICRYLRTRVESRPPLS----SVISYGSYVAVHMALGLLFLGGGMYT 193
+ G + + ++ P + + G VA H+A G++ + G++
Sbjct: 159 GLFGPGMWVSDPYGLTGSVQP---VAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFH 215
Query: 194 LSTSPPAIAA 203
+ PP
Sbjct: 216 ILVRPPQRLY 225
>1gnt_A HCP, hybrid cluster protein; oxidoreductase, aerobic desulfovibrio
vulgaris; HET: FSO; 1.25A {Desulfovibrio vulgaris} SCOP:
e.26.1.1 PDB: 1e9v_A 1e2u_A* 1oa1_A 1w9m_A 1e1d_A*
Length = 553
Score = 28.8 bits (64), Expect = 4.7
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 149 VLRICRYLRTRVESRPPLSSVISYGSYVAVHMALGLLFLGGGMYTLSTSPPA 200
L++ + P+S I++ AV + L LLFLG L + PA
Sbjct: 469 ALKLKEVFGLDDINDLPVSYDIAWYEQKAVAVLLALLFLGVKGIRLGPTLPA 520
>2b1e_A Exocyst complex component EXO70; tethering complex,
endocytosis/exocytosis complex; 2.00A {Saccharomyces
cerevisiae} PDB: 2b7m_A 2pfv_A
Length = 564
Score = 28.2 bits (62), Expect = 7.4
Identities = 10/73 (13%), Positives = 21/73 (28%)
Query: 349 LEESIFSFSSDPAIIKFTESFFNVINVGSKNEYESKLLIKVIYESLIRDKLTIVPIWLSI 408
+ + S P I + + F + + N + ES+ K ++ L
Sbjct: 208 SKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFGFFSFELVESINDVKKSLRGKELQN 267
Query: 409 IEALSRLPSPLSS 421
L +
Sbjct: 268 YNLLQDCTQEVRQ 280
>1gnl_A HCP, hybrid cluster protein; anaerobic desulfovibrio desulfuricans,
iron anomalous; HET: FSO; 1.25A {Desulfovibrio
desulfuricans} SCOP: e.26.1.1 PDB: 1gn9_A* 1oa0_A*
1upx_A*
Length = 544
Score = 28.0 bits (62), Expect = 8.6
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 149 VLRICRYLRTRVESRPPLSSVISYGSYVAVHMALGLLFLGGGMYTLSTSPPA 200
L++ + P+ I++ AV + L LL LG L + PA
Sbjct: 462 ALKLKEVFGLEDVNDLPIVYNIAWYEQKAVIVLLALLSLGVKNIHLGPTLPA 513
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.415
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,148,531
Number of extensions: 425556
Number of successful extensions: 989
Number of sequences better than 10.0: 1
Number of HSP's gapped: 984
Number of HSP's successfully gapped: 22
Length of query: 472
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 375
Effective length of database: 3,993,456
Effective search space: 1497546000
Effective search space used: 1497546000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.1 bits)