RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2630
         (472 letters)



>d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting
           protein PsbB {Thermosynechococcus elongatus [TaxId:
           146786]}
          Length = 488

 Score = 30.6 bits (69), Expect = 0.50
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 143 GTGDLEVLRICRYLR-TRVESRPPLSSVISYGSYVAVHMALGLLFLGGGMYTLSTSPPAI 201
           G    +   +   ++    E  P   +  + G  VA H+A G++ +  G++ +   PP  
Sbjct: 164 GMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQR 223

Query: 202 AA 203
             
Sbjct: 224 LY 225


>d1gnla_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
           {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 543

 Score = 26.7 bits (59), Expect = 7.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 165 PLSSVISYGSYVAVHMALGLLFLGGGMYTLSTSPPA 200
           P+   I++    AV + L LL LG     L  + PA
Sbjct: 478 PIVYNIAWYEQKAVIVLLALLSLGVKNIHLGPTLPA 513


>d2axtc1 f.55.1.1 (C:27-473) Photosystem II CP43 protein PsbC
           {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 447

 Score = 26.3 bits (58), Expect = 9.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 168 SVISYGSYVAVHMALGLLFLGGGMYTLSTSPPAIA 202
           SV +    V  H+ +GL+ + GG++ + T+P   A
Sbjct: 200 SVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWA 234


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0432    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,727,712
Number of extensions: 79699
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 4
Length of query: 472
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 383
Effective length of database: 1,185,626
Effective search space: 454094758
Effective search space used: 454094758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.7 bits)