BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2632
(374 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4R3J0|RTCA_MACFA RNA 3'-terminal phosphate cyclase OS=Macaca fascicularis GN=RTCA
PE=2 SV=1
Length = 366
Score = 326 bits (836), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 176/369 (47%), Positives = 237/369 (64%), Gaps = 12/369 (3%)
Query: 7 GPDVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKD 66
GP V +DGS++EGGGQILR++ S LL P+ V IRAGR PGL QHL+GL + +D
Sbjct: 3 GPRV-EVDGSIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMIRD 61
Query: 67 ICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIV 126
+C GRLE A IGSTEI F P I G AD+KTAGSV L+MQV++P +LF++ S+L +
Sbjct: 62 LCDGRLEGAEIGSTEITFTPEKIKGGIHTADTKTAGSVCLLMQVSMPCVLFAASPSELHL 121
Query: 127 KGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIR 185
KGGTNA+MAP IDY + +++P+ F F FN DI RG++PKGGGEV V ++PV+ +
Sbjct: 122 KGGTNAEMAPQIDYTVMVFKPIVEKFGFRFNCDIKT--RGYYPKGGGEVIVRMSPVKQLN 179
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
PI LT RG +T ++G AFVAG + A+ MA A + K D + I Q D
Sbjct: 180 PINLTDRGCVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDL--YVNIQPVQEPKD 237
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+A GNG+G+ I A TSTG ++G G + + G+ AA+ L ++L DE+ QD
Sbjct: 238 QAFGNGNGIIIIAETSTGCLFAGSSLGKRGVNADKVGIEAAEMLLANLRHGGTVDEYLQD 297
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDK------SCIIECQ 359
QLIV MALA G SR++ G ++LHT+TAIH AE + AKF + + ED+ + IIECQ
Sbjct: 298 QLIVFMALANGVSRIKTGPVTLHTQTAIHFAEQIAKAKFIVKKSEDEEDASKDTYIIECQ 357
Query: 360 GMGFVNKNW 368
G+G N N
Sbjct: 358 GIGMTNPNL 366
>sp|O00442|RTCA_HUMAN RNA 3'-terminal phosphate cyclase OS=Homo sapiens GN=RTCA PE=1 SV=1
Length = 366
Score = 324 bits (831), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 175/369 (47%), Positives = 238/369 (64%), Gaps = 12/369 (3%)
Query: 7 GPDVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKD 66
GP V +DGS++EGGGQILR++ S LL P+ V IRAGR PGL QHL+GL + +D
Sbjct: 3 GPRV-EVDGSIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMIRD 61
Query: 67 ICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIV 126
+C G+LE A IGSTEI F P I G AD+KTAGSV L+MQV++P +LF++ S+L +
Sbjct: 62 LCDGQLEGAEIGSTEITFTPEKIKGGIHTADTKTAGSVCLLMQVSMPCVLFAASPSELHL 121
Query: 127 KGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIR 185
KGGTNA+MAP IDY + +++P+ F F FN DI RG++PKGGGEV V ++PV+ +
Sbjct: 122 KGGTNAEMAPQIDYTVMVFKPIVEKFGFIFNCDIKT--RGYYPKGGGEVIVRMSPVKQLN 179
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
PI LT+RG +T ++G AFVAG + A+ MA A + K D + I Q D
Sbjct: 180 PINLTERGCVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDL--YVNIQPVQEPKD 237
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+A GNG+G+ I A TSTG ++G G + + G+ AA+ L ++L DE+ QD
Sbjct: 238 QAFGNGNGIIIIAETSTGCLFAGSSLGKRGVNADKVGIEAAEMLLANLRHGGTVDEYLQD 297
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDK------SCIIECQ 359
QLIV MALA G SR++ G ++LHT+TAIH AE + AKF + + ED+ + IIECQ
Sbjct: 298 QLIVFMALANGVSRIKTGPVTLHTQTAIHFAEQIAKAKFIVKKSEDEEDAAKDTYIIECQ 357
Query: 360 GMGFVNKNW 368
G+G N N
Sbjct: 358 GIGMTNPNL 366
>sp|Q2HJ88|RTCA_BOVIN RNA 3'-terminal phosphate cyclase OS=Bos taurus GN=RTCA PE=2 SV=1
Length = 366
Score = 322 bits (825), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 173/369 (46%), Positives = 235/369 (63%), Gaps = 12/369 (3%)
Query: 7 GPDVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKD 66
GP V +DG ++EGGGQILR++ S LL P+ V IRAGR PGL QHL+GL + +D
Sbjct: 3 GPRV-EVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMIRD 61
Query: 67 ICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIV 126
+C G+LE A IGSTEI F P I G AD+KTAGSV L+MQV++P +LF++ S+L +
Sbjct: 62 LCDGQLEGAEIGSTEITFTPEKIKGGVHTADTKTAGSVCLLMQVSMPCVLFAACPSELRL 121
Query: 127 KGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIR 185
KGGTNA+MAP IDY +++P+ F F FN DI RG++PKGGGEV V ++PV+ +
Sbjct: 122 KGGTNAEMAPQIDYTAMVFKPIVEKFGFTFNCDIK--MRGYYPKGGGEVIVRMSPVKQLS 179
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
PI LT RG +T ++G AFVAG + A+ MA A + K D + I Q D
Sbjct: 180 PINLTDRGCVTKIYGRAFVAGVLPFKVAKDMAAAAVRCIRKEIRDL--YVNIQPVQEPKD 237
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+A GNG+G+ I A TSTG ++G G + + G+ AA+ L ++L DE+ QD
Sbjct: 238 QAFGNGNGIIIIAETSTGCLFAGSSLGKRGVNADKVGIEAAEMLLANLRHGGAVDEYLQD 297
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDK------SCIIECQ 359
QLI+ MALA G SR++ G ++LHT+TAIH AE + AKF + + ED+ + IIECQ
Sbjct: 298 QLIIFMALASGISRIKTGPVTLHTQTAIHFAEQLAKAKFTVKKSEDEEDASKDTYIIECQ 357
Query: 360 GMGFVNKNW 368
G+G N N
Sbjct: 358 GIGMTNPNL 366
>sp|Q9D7H3|RTCA_MOUSE RNA 3'-terminal phosphate cyclase OS=Mus musculus GN=RtcA PE=2 SV=2
Length = 366
Score = 321 bits (822), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 168/365 (46%), Positives = 235/365 (64%), Gaps = 11/365 (3%)
Query: 11 LNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQG 70
+ +DG ++EGGGQILR++ S LL P+ V IRAGR PGL QHL+GL + +D+C G
Sbjct: 6 VEVDGGIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMVRDLCGG 65
Query: 71 RLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGT 130
LE A IGSTEI F P I G AD+KTAGSV L+MQV++P +LF++ S+L +KGGT
Sbjct: 66 HLEGAEIGSTEITFTPEKIRGGVHTADTKTAGSVCLLMQVSMPCVLFAASPSELRLKGGT 125
Query: 131 NADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIEL 189
NA+MAP IDY + +++P+ F F FN DI RG++PKGGGEV V V+PV+ + PI L
Sbjct: 126 NAEMAPQIDYTMMVFKPIAEKFGFTFNCDIKT--RGYYPKGGGEVIVRVSPVKRLDPINL 183
Query: 190 TQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIG 249
T RG +T ++G AFVAG + + A+ MA A + K D + I Q + D+A G
Sbjct: 184 TDRGSVTKIYGRAFVAGVLPLKVAKDMAAAAVRCIRKEIRDL--YVSIQPVQEARDQAFG 241
Query: 250 NGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIV 309
NGSG+ I A TSTG ++G G + + G+ AA+ L ++L DE+ QDQLI+
Sbjct: 242 NGSGIIIVAETSTGCLFAGSSLGKRGVNADKVGIEAAEMLLANLRHGGTVDEYLQDQLII 301
Query: 310 MMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDK------SCIIECQGMGF 363
MALA G SR++ G ++LHT+TAIH AE + AKF + + E++ + +IEC+G+G
Sbjct: 302 FMALANGISRIKTGSVTLHTQTAIHFAEQLAKAKFTVKKSEEEEDATKDTYVIECEGIGM 361
Query: 364 VNKNW 368
N +
Sbjct: 362 ANPHL 366
>sp|Q5R7P3|RTCA_PONAB RNA 3'-terminal phosphate cyclase OS=Pongo abelii GN=RTCA PE=2 SV=1
Length = 366
Score = 316 bits (810), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 173/369 (46%), Positives = 237/369 (64%), Gaps = 12/369 (3%)
Query: 7 GPDVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKD 66
GP V +DGS++EGGGQILR++ S LL P+ V IRAGR PGL QHL+GL + +D
Sbjct: 3 GPRV-EVDGSIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMIRD 61
Query: 67 ICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIV 126
+C G+LE A IGSTEI F P I G AD+KTAGSV L+MQV++P +LF++ S+L +
Sbjct: 62 LCDGQLEGAEIGSTEITFTPEKIKGGIHTADTKTAGSVCLLMQVSMPCVLFAASPSKLHL 121
Query: 127 KGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIR 185
KGGTNA+MAP IDY + +++P+ F F FN DI RG++PKGGGEV V ++PV+ +
Sbjct: 122 KGGTNAEMAPQIDYTVMVFKPIVEKFGFVFNCDIKT--RGYYPKGGGEVIVRMSPVKQLD 179
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
P+ LT RG +T ++G AFV G + A+ MA A + K D + + I Q D
Sbjct: 180 PVNLTDRGCVTKIYGRAFVTGVLPFKVAKDMAAAAARCIRKEIRD--SYVNIQPVQEPKD 237
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+A GNG+G+ I A TSTG ++G G + + G+ AA+ L ++L DE+ QD
Sbjct: 238 QAFGNGNGIIIIAETSTGCLFAGSSLGKRGVNADKVGIGAAEMLLANLRHGGTVDEYLQD 297
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDK------SCIIECQ 359
QLIV MALA G SR++ G ++LHT+TAIH AE + AKF + + ED+ + IIECQ
Sbjct: 298 QLIVFMALANGVSRIKTGPVTLHTQTAIHFAEQIAKAKFIVKKSEDEEDAAKGTYIIECQ 357
Query: 360 GMGFVNKNW 368
G+G N N
Sbjct: 358 GIGMTNPNL 366
>sp|O77264|RTCA_DROME RNA 3'-terminal phosphate cyclase OS=Drosophila melanogaster
GN=CG4061 PE=2 SV=1
Length = 361
Score = 244 bits (623), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 202/357 (56%), Gaps = 3/357 (0%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
+L IDGS LEGGGQ LR A+ S +L +P+ V IRA R PGL+ QHL+GL + +DI
Sbjct: 6 MLEIDGSYLEGGGQALRNALSLSCILGKPVRVVKIRASRPSPGLSHQHLHGLNLLRDITN 65
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+ ++ S+ + F P I + ++ TA S+TLI Q+ALP+LLF+ S+LIV GG
Sbjct: 66 ADVVGNYLLSSTVEFTPRTILDNTYRVETHTAASITLIYQMALPVLLFAGRPSRLIVSGG 125
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIEL 189
TN D APP++Y + P H F + D+ R GF+P+G G +DV PV + +L
Sbjct: 126 TNVDFAPPVEYMQEVLLPNLKH-FGVSFDLKVQRYGFYPRGQGRCQLDVQPVTKLNSGKL 184
Query: 190 TQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIG 249
G + +V G A+ AG + +N A M TA + + +P + I + S KA
Sbjct: 185 VAFGRIKSVSGVAYCAGRLPVNIAIDMQQTAQREIHRLWPS--QQCSIEPIKHSRQKAFH 242
Query: 250 NGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIV 309
NG+G+ + T++ G R G A+ +L + + +C D++ QDQLI+
Sbjct: 243 NGAGILMTVNTTSDVVLGASALGKKRIDGHVLGSEASCQLGDYMRKQVCVDDYMQDQLII 302
Query: 310 MMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGFVNK 366
MALA G S +R G+++ HTRTAI++AE MT KF++ ++ C+G+G VNK
Sbjct: 303 YMALAVGRSTMRTGKLTNHTRTAINVAEQMTGVKFDVAMEPGGQMLVSCKGLGHVNK 359
>sp|B8D680|RTCA_DESK1 RNA 3'-terminal phosphate cyclase OS=Desulfurococcus kamchatkensis
(strain 1221n / DSM 18924) GN=rtcA PE=3 SV=1
Length = 357
Score = 221 bits (562), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 141/359 (39%), Positives = 196/359 (54%), Gaps = 11/359 (3%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
+L IDGS+ EGGGQILR A+ S L +PI V+NIRA R PGL QHL + V K++
Sbjct: 3 ILEIDGSIGEGGGQILRYALALSALTLKPIRVYNIRAKRDNPGLRPQHLTAVEVLKEVTG 62
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+ENA +GS EI+F P + SG D TAGS++L++Q LP+LLF+ G S+ +KGG
Sbjct: 63 AEVENAKVGSMEILFKPTSRRSGEMEIDIGTAGSISLVLQAMLPVLLFAEGDSRARLKGG 122
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQY-IRPIE 188
TN +PPIDY H++ H +I VRRG +P+GGG VNV+V V+ ++P+
Sbjct: 123 TNVPWSPPIDYIKHVFLYNISH-MGVRANIEVVRRGHYPRGGGLVNVEVKRVEEALKPLM 181
Query: 189 LTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAI 248
+ +RG + H+ + + A ++A L + + T+ +I TY D +
Sbjct: 182 IVRRGRIRGFRIHSHCV-KLPAHVAVRQCESARRILSGIFKEKITE-EIETYPPDKDPHL 239
Query: 249 GNGSGVYIFAATSTGARY---SGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
G GSG+ I+ G R S G G P GE AA L L + FD H D
Sbjct: 240 GPGSGILIYVEAEPGIRLGSDSLGEKGKPAERVGE---EAALILIEELETGMAFDRHMGD 296
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAEL-MTSAKFNIIEHEDKSCIIECQGMGF 363
LI + LAKGTSR+ V I+LH TAI + +L AK + K II QG+G+
Sbjct: 297 MLIPYLFLAKGTSRIGVSMITLHLLTAIEVGKLFFPEAKVEVDGELGKPGIITIQGVGY 355
>sp|A3DN24|RTCA_STAMF RNA 3'-terminal phosphate cyclase OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rtcA PE=3 SV=2
Length = 357
Score = 212 bits (539), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 202/361 (55%), Gaps = 13/361 (3%)
Query: 9 DVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDIC 68
+++ IDGS+ EGGGQILR ++ FS + +P+ ++NIRA R PGL QHL + + I
Sbjct: 2 EIIEIDGSMGEGGGQILRYSLGFSAVTLKPVRIYNIRAKRSNPGLRPQHLTAVKALQMIT 61
Query: 69 QGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKG 128
++ A +GS EI F P GN+ + TAGS TL++Q LP LLFS G S + + G
Sbjct: 62 DAVVKGAKVGSMEIYFEPKRRKPGNYRFNIGTAGSTTLVIQAILPALLFSKGYSSVEIIG 121
Query: 129 GTNADMAPPIDY--YIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTP-VQYIR 185
GT+ +PPIDY Y+ ++ FF +++I RRG +P+GGG V + V P + ++
Sbjct: 122 GTDVPWSPPIDYMRYVFIYN---LRFFGVDVEIELYRRGHYPRGGGRVVLKVKPLLGKMK 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKM--NTAQTMADTAYDYLVKSYPDFKTKLKITTYQLS 243
PI + +RG+L +++G ++ V++ + A+ A +A +++ + + I +Y
Sbjct: 179 PINIVERGKLISIYG---ISHAVRLPRHVAERQARSAAT-VIREKLGVEPNILIESYPPG 234
Query: 244 SDKAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHT 303
D +G GSG+ ++A G R G G+ G AA++L L + FD H
Sbjct: 235 RDPHLGPGSGIVLYADVEAGTRLGGDALGARGKRAEIVGREAAEKLIDELSSGMAFDSHM 294
Query: 304 QDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAEL-MTSAKFNIIEHEDKSCIIECQGMG 362
D LI M LA G S V +++ HT TAI ++++ + ++K +I+ ++ + II G+G
Sbjct: 295 GDMLIPYMFLAGGESIAGVSKLTNHTLTAIEVSKIFLPNSKVSIVGNKGEKGIIRIHGVG 354
Query: 363 F 363
Sbjct: 355 L 355
>sp|A8MAV7|RTCA_CALMQ RNA 3'-terminal phosphate cyclase OS=Caldivirga maquilingensis
(strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=rtcA PE=3 SV=1
Length = 354
Score = 209 bits (532), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 186/348 (53%), Gaps = 13/348 (3%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ IDGS+ EGGGQILR A+ S + +P + NIRA R PGL QHL ++ A I
Sbjct: 1 MITIDGSMGEGGGQILRTALALSIITGKPFRIINIRARRSNPGLQPQHLASVMAAARISN 60
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLL-LFSSGQSQLIVKG 128
+++ A+ GS + F PG++ G++ D TAGS++L++Q LP+L + + G+ L + G
Sbjct: 61 AKVDGAYKGSLSLTFEPGDVKCGDYSIDIGTAGSISLVLQTLLPVLAVVNCGEVTLDITG 120
Query: 129 GTNADMAPPIDYYIHLWRPVFCH---FFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIR 185
GT+ APPIDY R V H I + +RRG +P+GGG+V V V P ++
Sbjct: 121 GTDVPKAPPIDYV----RFVLAHNLSLMGVGIKVELIRRGHYPRGGGKVKVTVKPAGRLK 176
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
PI +T+ GEL +WG + A + + A A A DYL K K + + Y+ D
Sbjct: 177 PINITELGELKGIWGLSH-AVRLPSHVAVRQAKAAEDYLSKL--GLKPSISLEYYEQGKD 233
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGE-CGLNAAKELWSSLCENICFDEHTQ 304
+G GSG+ ++A ++ G R G R P E G AA+ L + + FD+H
Sbjct: 234 PHLGPGSGITLWAESTNGQRIGADSLGE-RGKPAEDVGREAAEALAAVINAGAAFDDHMG 292
Query: 305 DQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDK 352
D LI +ALA+G S V ++ H T I I +L +A + + K
Sbjct: 293 DMLIPFLALAEGRSEYTVVNLTSHLSTNISIVKLFLNANIETMNYNKK 340
>sp|A1RSJ7|RTCA_PYRIL RNA 3'-terminal phosphate cyclase OS=Pyrobaculum islandicum (strain
DSM 4184 / JCM 9189) GN=rtcA PE=3 SV=1
Length = 348
Score = 208 bits (529), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 125/356 (35%), Positives = 189/356 (53%), Gaps = 13/356 (3%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ IDGS EGGGQILR ++ S LL +P+ + NIRA R PGL QHL G+ A +
Sbjct: 2 IVKIDGSYGEGGGQILRTSIALSALLGKPVEIINIRAKRTNPGLQPQHLTGVSAAALLTD 61
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A GST + F P + G F D TAGS++L++Q P+LL++ ++L++ GG
Sbjct: 62 ADIEGAAKGSTRLYFKPKTLKCGTFNIDIGTAGSISLVIQTLAPILLYAPCPTKLVITGG 121
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIEL 189
T+ APPIDY +++ V F I I VRRG +P+GGG V V V P++ +R +
Sbjct: 122 TDVAWAPPIDYMRYVFVKVLS-LFGAKIAIELVRRGHYPRGGGRVIVYVEPIKKLRAVHY 180
Query: 190 TQRGELTAVWG--HAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKA 247
+ G L + G HA + + A+ A A + L K + ++++ T SD
Sbjct: 181 VEFGRLVKISGISHAV---NLPTHVAERQAKAAKETLAKL--GYVAEVEVET---RSD-G 231
Query: 248 IGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQL 307
+G GSG+ ++A + G G G E G AA+ L + L + D H D
Sbjct: 232 LGPGSGIVLWAESDIGNVVGGDALGERGKPAEEVGREAAERLAAVLKTGVSLDPHMADMA 291
Query: 308 IVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGF 363
+V MALA+G S++ + +LH +T ++I E KF +E IIE G+G+
Sbjct: 292 VVYMALAEGRSKMSTSEATLHLQTNMYIVEQFLPVKFK-LEKTGARYIIEVDGIGY 346
>sp|O15746|RTCA_DICDI Probable RNA 3'-terminal phosphate cyclase OS=Dictyostelium
discoideum GN=rtca PE=3 SV=1
Length = 433
Score = 207 bits (527), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 130/369 (35%), Positives = 204/369 (55%), Gaps = 20/369 (5%)
Query: 8 PDVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDI 67
PD IDGS+LEGGGQILR ++ + L ++ I + IR R +PGL QH G+ + +
Sbjct: 34 PD-FKIDGSILEGGGQILRNSVALASLFNKAISIEKIRYNRDQPGLKNQHKAGIDLMSRL 92
Query: 68 CQGRLENAHIGSTEIIFYPGNIT---SGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQL 124
+ L +GS ++ + P T G AD+KTAGS+ L++QV+LP L+F+ +++
Sbjct: 93 FKAHLTGCSVGSCKLYYQPTQKTIQDDGVIEADTKTAGSICLMIQVSLPCLIFAPHSTKM 152
Query: 125 IVKGGTNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPV-QY 183
++ GGTN D AP DY +++ P+ F ++ +RGF+PKGGG V + P+ Q
Sbjct: 153 VLGGGTNCDFAPAADYIQNVFLPI-ATTMGFKCEMSIDKRGFYPKGGGAVTLTTQPLTQP 211
Query: 184 IRPIELTQRGELTA-VWGHAFVAGGVKMNTAQTMADTAYDYLVKSYP--DFKTKLKITTY 240
+ PI + +GE+ V F + + A+ M +TA + K + D +T+L I
Sbjct: 212 LSPITIVNKGEVNRIVIKSYFTSPRISPLVAERMNNTAKKLIKKDFKKVDVETEL-IDVS 270
Query: 241 QLSSDKAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFD 300
+ S G+G+ + I A T G + NG+ + +AA L L + C D
Sbjct: 271 KFS----FGDGTFIEIRAYTDQGCIFGATGNGAIGVPAEKVAEDAANSLLKDLQDGGCMD 326
Query: 301 EHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNI------IEHEDKSC 354
E+ QDQLI+ MALAKG S+++ G ISLHT+T+IHI LMT A F I + +++
Sbjct: 327 EYLQDQLIIFMALAKGKSQIKTGPISLHTQTSIHITSLMTGAIFTITPLTNNTQSGEETN 386
Query: 355 IIECQGMGF 363
+I C+G+ +
Sbjct: 387 LITCEGISY 395
>sp|A3MXQ7|RTCA_PYRCJ RNA 3'-terminal phosphate cyclase OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rtcA PE=3 SV=1
Length = 347
Score = 207 bits (526), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/355 (35%), Positives = 185/355 (52%), Gaps = 13/355 (3%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ IDGS EGGGQILR A+ S LL P+ VFNIRA R PGL QHL G+ A +
Sbjct: 1 MIRIDGSYGEGGGQILRTAIALSALLGVPVEVFNIRAKRANPGLQPQHLTGVNAAALLTD 60
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
LE A GST ++F P I G F D TAGS++L++Q P+ LF+ +L + GG
Sbjct: 61 AELEGAAKGSTRLVFKPKTIKCGGFQIDIGTAGSISLVIQTLTPIALFAPCPVRLSITGG 120
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIEL 189
T+ APPIDY ++ PV F + I +RRG +PKGGG V V+V PV ++P++
Sbjct: 121 TDVAWAPPIDYMRFVFAPVVGR-FGGRVKIEVLRRGHYPKGGGRVEVEVAPVDVLKPVDA 179
Query: 190 TQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSY-PDFKTKLKITTYQLSSDKAI 248
G++ + G + + A + Y D T+++ + +
Sbjct: 180 VDFGKVLKIRGISHAVNLPAHVAERQARAAAEALAKEGYAADISTEVR--------NDGL 231
Query: 249 GNGSGVYIFAATSTGARYSGGCNGSPRTSPGEC-GLNAAKELWSSLCENICFDEHTQDQL 307
G GSGV ++A + G G G R P E G AA++L ++L D H D
Sbjct: 232 GPGSGVVLWAESDVGNVVGGDALGE-RGKPAEAVGREAAEKLLTALKSGASVDSHMADMA 290
Query: 308 IVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMG 362
+V MALA+G SR+ +++LH +T ++I E KF +E + +IE G+G
Sbjct: 291 VVYMALAEGVSRITTPELTLHLQTNMYIVERFLPVKFR-VEKLGQRHLIEVNGVG 344
>sp|Q8ZST4|RTCA_PYRAE RNA 3'-terminal phosphate cyclase OS=Pyrobaculum aerophilum (strain
ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rtcA PE=3 SV=1
Length = 348
Score = 205 bits (522), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 125/356 (35%), Positives = 188/356 (52%), Gaps = 15/356 (4%)
Query: 11 LNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQG 70
+ IDGS EGGGQILR ++ S LL RP+ + NIRA R PGL QHL G+ VA +
Sbjct: 3 VRIDGSYGEGGGQILRTSIALSALLGRPVEIVNIRAKRANPGLQPQHLTGVKVAALLTDA 62
Query: 71 RLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGT 130
++ A GST + F P + GNF D TAGS++LI+Q P+LL++ +Q+ V GGT
Sbjct: 63 EVKGAEKGSTRLYFEPKTLKCGNFSIDIGTAGSISLIVQTLAPILLYAPCPTQITVTGGT 122
Query: 131 NADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELT 190
+ APPIDY ++ V F + I +RRG +P+GGG V PV+ ++ +E
Sbjct: 123 DVAWAPPIDYMRFVFTKVL-ERFGAKLSIELIRRGHYPRGGGRAVVRAEPVKRLKAVESE 181
Query: 191 QRGELTAVWG--HAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAI 248
+ G + + G HA + + A+ A A + L K D +++ + +
Sbjct: 182 EFGNVVKISGISHAV---NLPPHVAERQAKAAREELSKMGLDADIAIEV------RNDGL 232
Query: 249 GNGSGVYIFAATSTGARYSGGCNGSPRTSPGE-CGLNAAKELWSSLCENICFDEHTQDQL 307
G GSGV I+A + G G G R P E G AA++L + L D H D
Sbjct: 233 GPGSGVVIWAVSDAGNVIGGDSLGE-RGKPAETVGKEAAQKLIAVLKTRASVDPHMADMA 291
Query: 308 IVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGF 363
++ MALA+G SR+ + ++H +T ++I E KF+ +E + IE +G+G+
Sbjct: 292 VLYMALAEGRSRISTSEETMHLKTNMYIIEQFLRVKFSTMEKAGRYT-IEVEGVGY 346
>sp|A2BN21|RTCA_HYPBU RNA 3'-terminal phosphate cyclase OS=Hyperthermus butylicus (strain
DSM 5456 / JCM 9403) GN=rtcA PE=3 SV=1
Length = 359
Score = 202 bits (513), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 181/340 (53%), Gaps = 9/340 (2%)
Query: 13 IDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRL 72
IDGS+ EGGGQILR + + LL +P+ + NIRA R +PGL QHL + ++ R+
Sbjct: 4 IDGSIGEGGGQILRTTLALAALLGKPVRIVNIRAKRPRPGLQRQHLTSVKAVAELASARV 63
Query: 73 ENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNA 132
E +GST ++F P + SG FY + TAGS+TL++Q LP+ F+ G ++ + GGT+
Sbjct: 64 EGLELGSTTLVFIPRGLRSGRFYFNIGTAGSITLVLQALLPVTAFAPGPVEVEIVGGTDV 123
Query: 133 DMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVT-PVQYIRPIELTQ 191
+PPIDY + R + F F +I RRG +P+GGG V + VT P ++P++L +
Sbjct: 124 PWSPPIDYVRFVLRKLLA-MFGFEFEIIVKRRGHYPRGGGRVVLRVTQPPHVLKPVKLEE 182
Query: 192 RGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIGNG 251
RG++ V G + A + + A+ A +A L P + + Y+ S D +G G
Sbjct: 183 RGKVLRVEGLSH-AVRLPRHVAERQARSAEAVLRSKLPGVPISIDLEWYEPSRDPHLGPG 241
Query: 252 SGVYIFAAT--STGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIV 309
SGV ++A S S G G P + G AA++L L D H D LI
Sbjct: 242 SGVVVWAVAEHSVLGSDSLGAKGKPAEA---VGREAAEKLLEDLATGTALDRHASDMLIP 298
Query: 310 MMALAKGTSRVRVGQISLHTRTAIHIAELMTS-AKFNIIE 348
ALA G S + ++++H T I + +++ A+ IE
Sbjct: 299 YAALACGESILGGARLTMHAWTNIEVVKMLVPGAEMEFIE 338
>sp|B1YDJ1|RTCA_PYRNV RNA 3'-terminal phosphate cyclase OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=rtcA PE=3 SV=1
Length = 347
Score = 199 bits (505), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 186/358 (51%), Gaps = 19/358 (5%)
Query: 11 LNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQG 70
+ IDGS EGGGQILR ++ S LL +P+ + NIRA R PGL QHL G+ A +
Sbjct: 3 VRIDGSYGEGGGQILRTSIALSALLGKPVEIVNIRAKRANPGLQPQHLTGVSAAALLTDA 62
Query: 71 RLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGT 130
+E A GST + F P + G F D TAGS++L++Q P+LL++ ++L++ GGT
Sbjct: 63 EVEGAAKGSTRLFFKPKALKCGTFNIDIGTAGSISLVVQTLAPILLYAPCPTKLVITGGT 122
Query: 131 NADMAPPIDYYIHLWRPVFCHF---FNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPI 187
+ APPIDY R VF + F I I V+RG +P+GGG+ V P +R +
Sbjct: 123 DVAWAPPIDY----MRFVFARYLTRFGARIAIELVKRGHYPRGGGKAVVQAEPAGRLRAV 178
Query: 188 ELTQRGELTAVWG--HAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
+ + G + G HA + + A+ A A + L K + ++++ + +
Sbjct: 179 DSVEFGRPAKIAGVSHAV---NLPPHVAERQARAAREALAKL--GYAAEVEVE----ARN 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+G GSGV ++A + G G G E G AA++L + L D H D
Sbjct: 230 DGLGPGSGVVLWAESDVGNVVGGDALGERGKPAEEVGREAAEKLAAVLKAGASLDPHMAD 289
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGF 363
+++ MALA+G SR+ + ++H +T I+I E KF +E IIE +G+G+
Sbjct: 290 MVVLYMALAQGRSRLSTTEATMHLQTNIYIVEQFLPVKFK-LERAGPRYIIEVEGVGY 346
>sp|Q8TZC9|RTCA_METKA RNA 3'-terminal phosphate cyclase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rtcA PE=3
SV=1
Length = 352
Score = 198 bits (504), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 116/357 (32%), Positives = 184/357 (51%), Gaps = 11/357 (3%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ IDGS EGGGQILR A+ S L P+ ++NIRA R +PGL+ QHL+ + +IC
Sbjct: 3 LIEIDGSYGEGGGQILRTAVGMSALTGEPVRIYNIRANRPRPGLSHQHLHAVKAVAEICD 62
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
E IGSTEI+F PG + G + D TAGSVTL++Q + + G ++ V+GG
Sbjct: 63 AECEGLEIGSTEIVFEPGKVKGGEYEVDIGTAGSVTLLLQAVKLAAIAADGPVEMEVRGG 122
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFN---FNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRP 186
T+ +PP+DY I+ V H+ + + ++ +RRG +P+GGG V + P + ++P
Sbjct: 123 TDVKWSPPVDYEIN----VNAHYLDRLGYRYELEVLRRGHYPRGGGIVRARMEPPKRLKP 178
Query: 187 IELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDK 246
+E + GEL +V G + + + A+ A A + + + + +++I TY D
Sbjct: 179 LEAVKFGELESVRGISHCV-RLPPHVAERQAKAASEIIEREL-GIRPEIEIETYPKGRDP 236
Query: 247 AIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGE-CGLNAAKELWSSLCENICFDEHTQD 305
+G GSG+ ++A G R G + P E G AA++L L + DEH D
Sbjct: 237 HLGPGSGIVLWAEDDQGNRIGADALGE-KGKPAEVVGREAAEQLVQRLRTGMALDEHMGD 295
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMG 362
Q++ +A+A G S V + H T + E I E + +E + G
Sbjct: 296 QILPFLAIADGESVFGVTGVDPHLPTNAWVVEKFLPVSVEIRGKEGEPATVEVRPEG 352
>sp|O28837|RTCA_ARCFU RNA 3'-terminal phosphate cyclase OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rtcA PE=3 SV=1
Length = 328
Score = 181 bits (459), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 173/327 (52%), Gaps = 19/327 (5%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ IDGS EGGGQILR A+ S + + + + NIRA R KPGLAAQHL G+ AK I
Sbjct: 1 MIEIDGSFGEGGGQILRTAVALSCVTGKAVRIRNIRANRPKPGLAAQHLKGIEAAKIISN 60
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E IGSTEI+F PG++ GNF D TAGSVTLI Q L LLF+ S L V GG
Sbjct: 61 AEVEGLRIGSTEIVFNPGSVRGGNFRVDIGTAGSVTLIFQTVLLPLLFADRDSTLTVTGG 120
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIEL 189
T+ APP+DY+ ++ ++ ++RG++PKGGG V + V P + ++ +
Sbjct: 121 TDVAWAPPVDYFKNVTLRALRE-MGAECELEVLKRGYYPKGGGMVRLTVRPAE-MKGVVY 178
Query: 190 TQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIG 249
+ E+ H G + A+ A +A ++L + + +I T L K +
Sbjct: 179 ERIDEIVRGVSHCQNLPG---HVAERQASSARNFL----EERGIRAEIRTEVL---KGLS 228
Query: 250 NGSGVYIFAATSTGARYSGGCNGSPRTSPGE-CGLNAAKELWSSLCENICFDEHTQDQLI 308
GSG+ +++ Y GG R E G AA+ L+ L + FD H DQ++
Sbjct: 229 TGSGIVLWSG------YKGGSALGERGKRAEVVGQEAAESLYRELMSDAAFDAHLADQVM 282
Query: 309 VMMALAKGTSRVRVGQISLHTRTAIHI 335
A+A+G + ++++H ++ ++
Sbjct: 283 PFAAMARGRTEYTTSEVTMHQKSNAYV 309
>sp|A8A9W2|RTCA_IGNH4 RNA 3'-terminal phosphate cyclase OS=Ignicoccus hospitalis (strain
KIN4/I / DSM 18386 / JCM 14125) GN=rtcA PE=3 SV=1
Length = 353
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 179/355 (50%), Gaps = 9/355 (2%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ IDGS EGGGQILR ++ S + +P+ +FNIRA R PGL QH+ + ++
Sbjct: 1 MIEIDGSFGEGGGQILRTSVALSAVTLKPVRIFNIRAKRKNPGLRRQHMVAVKALAEMTD 60
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+ +GSTEI+F P + +G F D TAGSV+L++Q P LF+ G+ ++ ++GG
Sbjct: 61 AEVRGLELGSTEIVFIPKTLKAGTFRFDIGTAGSVSLVLQAVTPAALFAPGEVRVQLRGG 120
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIEL 189
T+ M+PP+DY ++ P+ F ++ RRG +PKGGGEV PV +
Sbjct: 121 TDVPMSPPVDYLRFVFYPLL-ERFGAKTELVLKRRGHYPKGGGEVEFASRPVDSLTQWGE 179
Query: 190 TQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIG 249
+RGE+ V G + + + A+ A A + L KS + + Y D +G
Sbjct: 180 VERGEVLKVRGLSHCV-KLPKHVAERQAKAAEEVLKKSGLK-NVDIDLEWYPPERDPHLG 237
Query: 250 NGSGVYIFAAT--STGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQL 307
GSG+ ++A T S S G G GE AA++L L D H D +
Sbjct: 238 PGSGIVLWAITERSLLGADSLGARGKRAERVGE---EAARKLLEDLSTGKALDRHMSDMI 294
Query: 308 IVMMALAKGTSRVRVGQISLHTRTAIHIA-ELMTSAKFNIIEHEDKSCIIECQGM 361
+ ++LA G + V +++H T +H+ + + + I +K ++ +G+
Sbjct: 295 VPYVSLACGRTEVGGAALTMHAWTHVHVVKKFLPELEVEISGELNKPFVMRVKGV 349
>sp|Q2Y720|RTCA_NITMU RNA 3'-terminal phosphate cyclase OS=Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849) GN=rtcA PE=3 SV=1
Length = 353
Score = 174 bits (441), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 168/339 (49%), Gaps = 10/339 (2%)
Query: 12 NIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGR 71
IDGS EGGGQ+LR ++ + + + + V+NIRA R PGLA QHL + +C+ R
Sbjct: 3 EIDGSYGEGGGQLLRTSVALAAITGQSVRVYNIRAKRSNPGLAPQHLTAVKAVAALCRAR 62
Query: 72 LENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTN 131
E + S EIIF PG + G + TAGSVTL++Q ALP+ L + ++ + GGT+
Sbjct: 63 TEGMEVKSQEIIFRPGPLRGGEYDFPIGTAGSVTLVLQAALPVALACGEKVRMNISGGTD 122
Query: 132 ADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELTQ 191
APP+DY+ ++ P + I + RG++P+GGG+V VDV P +RP+ L
Sbjct: 123 VRAAPPLDYFRYVLLP-LVYSMGARAKIEVLLRGYYPRGGGKVVVDVEPCLPLRPVLLNA 181
Query: 192 RGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIGNG 251
L + G ++ + + MA+ A L ++P L++ D AIG G
Sbjct: 182 SEGLEGITGFVHIS-NLPKHIIHRMANGALAEL-STFPTPAVGLEV----FGKDDAIGEG 235
Query: 252 SGVYIFAATSTGARYSGGCNGSPRTSPGE-CGLNAAKELWSSLCENICFDEHTQDQLIVM 310
G + A +R G + R P E G A + L + D H DQ+++
Sbjct: 236 -GAVLLTAHKEHSRL-GASAVAERGVPAERLGAEAGRCLREEILSGATLDIHAADQVLIY 293
Query: 311 MALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEH 349
+ALA G S ++S H T I + E +F + +
Sbjct: 294 LALASGVSCFLTRELSSHAATTIWLLEQFLPVRFQVTQE 332
>sp|Q60335|RTCA_METJA RNA 3'-terminal phosphate cyclase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=rtcA PE=3 SV=1
Length = 338
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 177/346 (51%), Gaps = 17/346 (4%)
Query: 9 DVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDIC 68
D + IDGS LEGGGQI+R A+ S L +P+ + NIR R GLA QH++ + K +C
Sbjct: 2 DFIVIDGSYLEGGGQIIRTAVSLSALTQKPVKIINIRKKRKNKGLAPQHVSAVKAVKKLC 61
Query: 69 QGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKG 128
+ ++GS E+ F P ++ +F D TAGS++L++Q LPL L + + + +KG
Sbjct: 62 NAEVFGLNVGSEELTFIPSKLSPKDFTIDIGTAGSISLVIQTLLPLSLGINKKFTVKIKG 121
Query: 129 GTNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIE 188
GT+ APPIDY ++ + +F ++ ++RGF+P+GGGEV +V P + I+ +
Sbjct: 122 GTDVKRAPPIDYVKNVTLKILRNFGVLT-ELKVLKRGFYPEGGGEVIFEVKPSK-IKKFD 179
Query: 189 LTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAI 248
L + + V G ++V + + A+ M A D L K KL + ++ K I
Sbjct: 180 LIEHSKSNLVEGISYVQ-NLDESIARRMRKKAVDLLNKE------KL-LPNIKIECSKGI 231
Query: 249 GNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLI 308
G+G+ ++ T G C G A EL + D++ DQ+I
Sbjct: 232 STGAGIVLWNDT-----LGGSCLGEKGLRAEIVAERAVNELLKERESGMALDKYMGDQII 286
Query: 309 VMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSC 354
+A KG V V +I+ HT+T + + + F I E+++ +C
Sbjct: 287 PFLAFGKGI--VGVSEITNHTKTNMWVVKHFLDVDFEIKEYKENNC 330
>sp|B1L6E9|RTCA_KORCO RNA 3'-terminal phosphate cyclase OS=Korarchaeum cryptofilum
(strain OPF8) GN=rtcA PE=3 SV=1
Length = 348
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 179/356 (50%), Gaps = 12/356 (3%)
Query: 9 DVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDIC 68
+ + IDGS EGGG +LR A+ S + +P+ ++NIR R PGL QHLN + I
Sbjct: 2 EFIRIDGSYGEGGGSLLRYAIALSSVTMKPVEIYNIRVKRANPGLRPQHLNAVRALARIT 61
Query: 69 QGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKG 128
+ +E +GST + F P G+F D TAGS++LI+Q LP + S + L ++G
Sbjct: 62 EATVEGDEVGSTALRFIPRKRAGGSFEIDIGTAGSISLIIQAILPACISSEEEISLRIRG 121
Query: 129 GTNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIE 188
GT+ +APPIDY ++ ++ +RRG +P+GGG V + +P + PI+
Sbjct: 122 GTDVPLAPPIDYMAEVFLRNMAP-LGVRAELKLLRRGHYPRGGGIVELHASPSKLF-PID 179
Query: 189 LTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAI 248
+ + V G A + + + ++ +A D L K + +++ + S D +
Sbjct: 180 KVRGEKFDRVLGRCH-AVKLPRSVVERISSSAIDTLRKE--GLRVEIE---EEWSEDGHL 233
Query: 249 GNGSGVYIFAATSTGARYSGGCNGSPRTSPGE-CGLNAAKELWSSLCENICFDEHTQDQL 307
G G+G+ ++ T + R G + P E G NAA +L + + FD H D +
Sbjct: 234 GPGAGIVLW--TDSNPRIGADELGE-KGKPSEVVGKNAASKLLDEIKAGMAFDSHMGDMI 290
Query: 308 IVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGF 363
I +ALA+G SRV + +++LH + I + E KF + +IE +G G
Sbjct: 291 IPYLALARGRSRVGISKLTLHAESNIWLVERFLPVKFIVQGGVGSPTVIEVEGAGL 346
>sp|A0B532|RTCA_METTP RNA 3'-terminal phosphate cyclase OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=rtcA PE=3 SV=2
Length = 332
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 120/343 (34%), Positives = 174/343 (50%), Gaps = 23/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ IDGS EGGGQI+R ++ S L P+ + NIR R +PGLAAQH+ + I +
Sbjct: 1 MIEIDGSYGEGGGQIVRTSVALSTLTGIPVRIKNIRRNRPRPGLAAQHVRAIEALAQISR 60
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
H+GS EI F PG I++G++ D TAGSVTL++Q LP L + G + V+GG
Sbjct: 61 AETRGVHLGSEEIEFIPGRISAGSYDVDIGTAGSVTLLIQCLLPALTAAEGPVTVTVRGG 120
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRP--I 187
T+ +P +DY H+ P H F RRG++P+GGG V + P + +RP +
Sbjct: 121 TDVRWSPTVDYLEHVALPAM-HLFGVTATFRCERRGYYPRGGGVVVLSTRPSR-LRPARL 178
Query: 188 ELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKA 247
EL + G + G + G + + A+ AD A + L + + ++ I T SS
Sbjct: 179 ELIEEG----ICGISH-CGSLPEHVARRQADAALELLKEK--GYDARIDIQTMSSSSP-- 229
Query: 248 IGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQL 307
GSG+ ++ +G R S G + G AAK L L D H DQL
Sbjct: 230 ---GSGITLW----SGFRGSSAL-GERGVRAEDVGREAAKALIDELKSKASVDVHLADQL 281
Query: 308 IVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHE 350
I +ALA G R +IS HTRT I A+ + + +I E E
Sbjct: 282 IPYIALAGGEYTTR--EISSHTRTNIWTAQRILRCRIDIDEGE 322
>sp|Q0TC48|RTCA_ECOL5 RNA 3'-terminal phosphate cyclase OS=Escherichia coli O6:K15:H31
(strain 536 / UPEC) GN=rtcA PE=3 SV=1
Length = 338
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 165/343 (48%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + IRAGR KPGL QHL + A +IC+
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGQPFTITGIRAGRAKPGLLRQHLTAVKAAAEICR 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLVFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I +H +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGVHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + + +A A + + + L D
Sbjct: 179 SLQLGERGNIVQMRGEVLLAGVPRHVAEREIATLAASFSLHEQ---------AVHSLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA GT V S H T I + E +F +IE
Sbjct: 287 QLVLPMALA-GTGEFTVAHPSCHLLTNIAVVERFLPVRFGLIE 328
>sp|B7M2I0|RTCA_ECO8A RNA 3'-terminal phosphate cyclase OS=Escherichia coli O8 (strain
IAI1) GN=rtcA PE=3 SV=1
Length = 338
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 168/343 (48%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + +IRAGR KPGL QHL + A +IC+
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAAAEICR 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G + +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLVFRPGTVRGGEYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I IH +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGIHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG ++ +A+ L S+ + + + L D
Sbjct: 179 TLQLGERGNIVQMRGEVLLAG-----VSRHVAEREIATLAGSFSLHEQNI----HNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA G +V S H T I + E +F +IE
Sbjct: 287 QLVLPMALA-GAGEFKVAHPSCHLLTNIAVVERFLPVRFGLIE 328
>sp|B7UKC4|RTCA_ECO27 RNA 3'-terminal phosphate cyclase OS=Escherichia coli O127:H6
(strain E2348/69 / EPEC) GN=rtcA PE=3 SV=1
Length = 338
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/345 (31%), Positives = 170/345 (49%), Gaps = 22/345 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + IRAGR KPGL QHL + A +IC+
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGQPFTITGIRAGRAKPGLLRQHLTAVKAATEICR 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLVFRPGTVRGGDYRFAIGSAGSSTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ + IH +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KMGIHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + +A+ LV S+ + + + L D
Sbjct: 179 TLQLGERGNIVQMRGEVLLAG-----VPRHVAEREIATLVGSFSLHEQNI----HNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGSGNTVSLEVESENITERFF---IVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHE 350
QL++ MALA G V S H T I + E S +F+++E +
Sbjct: 287 QLVLPMALA-GAGEFTVAHPSCHLLTNIAVVERFLSVRFSLVEAD 330
>sp|Q9V0Z6|RTCA_PYRAB RNA 3'-terminal phosphate cyclase OS=Pyrococcus abyssi (strain GE5
/ Orsay) GN=rtcA PE=3 SV=1
Length = 342
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 173/339 (51%), Gaps = 16/339 (4%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ IDGS EGGGQILR ++ S + P+ + NIRA R PGL QHL+G++ K +
Sbjct: 1 MITIDGSYGEGGGQILRTSIALSAITGEPVRIINIRANRPNPGLRPQHLHGILALKHLAN 60
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
++ AH+GS E++F P + + + TAGS+TL++Q LP + F+ + + + GG
Sbjct: 61 ADVKGAHVGSRELVFIPKRLEAKKVEVNIGTAGSITLVLQALLPAMAFAKNRVEFKITGG 120
Query: 130 TNADMAPPIDYYIHLWRPVFC-HFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIE 188
T+ +PP+DY ++ +F I VRRG +PKGGG + V P + R +
Sbjct: 121 TDVPWSPPVDYLANV--TLFALEKLGIMAGIKIVRRGHYPKGGGIIEGYVEPWKERRELV 178
Query: 189 LTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAI 248
T+ + V G + A + + A+ A A + L K K K +++ K++
Sbjct: 179 ATKYSSIAKVEGISH-ATNLPAHVAERQAKAAKEELSKLEVPVKIKTEVS-------KSL 230
Query: 249 GNGSGVYIFAATSTGARYSGGCNGSPRTSPGE-CGLNAAKELWSSLCENICFDEHTQDQL 307
G GSG+ ++A T R G G R P E G AA+EL L C D+ DQL
Sbjct: 231 GPGSGIVVWAETDC-LRLGGDALGK-RGKPAEVVGKEAAQELLEQLKPGYCVDKFLGDQL 288
Query: 308 IVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNI 346
I +A + G + V +++ H +T I + E F++
Sbjct: 289 IPFLAFSGG--EIWVSEVTNHLKTNIWVVENFLGKVFDL 325
>sp|B7N1J7|RTCA_ECO81 RNA 3'-terminal phosphate cyclase OS=Escherichia coli O81 (strain
ED1a) GN=rtcA PE=3 SV=1
Length = 338
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 168/343 (48%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + IRAGR KPGL QHL + A +IC+
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGQPFTITGIRAGRAKPGLLRQHLTAVKAAAEICR 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLVFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I +H +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGVHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + +A+ L S+ + + + L D
Sbjct: 179 SLQLGERGNIVQMRGEVLLAG-----VPRHVAEREIATLAGSFSLHEQNI----HNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA G V S H +T I + E +F++IE
Sbjct: 287 QLVLPMALA-GAGEFTVAHPSCHLQTNIAVVERFLPVRFSLIE 328
>sp|A7ZSU9|RTCA_ECO24 RNA 3'-terminal phosphate cyclase OS=Escherichia coli O139:H28
(strain E24377A / ETEC) GN=rtcA PE=3 SV=1
Length = 338
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 167/343 (48%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + +IRAGR KPGL QHL + A +IC+
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAAAEICR 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G + +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLVFRPGTVRGGEYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I IH +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGIHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + +A+ L S+ + + + L D
Sbjct: 179 TLQLGERGNIVQMCGEVLLAG-----VPRHVAEREIATLAGSFSLHEQNI----HNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA G +V S H T I + E +F +IE
Sbjct: 287 QLVLPMALA-GAGEFKVAHPSCHLLTNIAVVERFLPVRFGLIE 328
>sp|Q1R5L5|RTCA_ECOUT RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain UTI89
/ UPEC) GN=rtcA PE=3 SV=2
Length = 338
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 167/343 (48%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + IRAGR KPGL QHL + A +IC+
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGQPFTITGIRAGRAKPGLLRQHLTAVKAAAEICR 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLVFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I +H +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGVHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + +A+ L S+ + + + L D
Sbjct: 179 SLQLGERGNIVQMRGEVLLAG-----VPRHVAEREIATLAGSFSLHEQNI----HNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA GT V S H T I + E +F +IE
Sbjct: 287 QLVLPMALA-GTGEFTVAHPSCHLLTNIAVVERFLPVRFGLIE 328
>sp|A1AGU3|RTCA_ECOK1 RNA 3'-terminal phosphate cyclase OS=Escherichia coli O1:K1 / APEC
GN=rtcA PE=3 SV=2
Length = 338
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 167/343 (48%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + IRAGR KPGL QHL + A +IC+
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGQPFTITGIRAGRAKPGLLRQHLTAVKAAAEICR 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLVFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I +H +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGVHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + +A+ L S+ + + + L D
Sbjct: 179 SLQLGERGNIVQMRGEVLLAG-----VPRHVAEREIATLAGSFSLHEQNI----HNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA GT V S H T I + E +F +IE
Sbjct: 287 QLVLPMALA-GTGEFTVAHPSCHLLTNIAVVERFLPVRFGLIE 328
>sp|B7MDP5|RTCA_ECO45 RNA 3'-terminal phosphate cyclase OS=Escherichia coli O45:K1
(strain S88 / ExPEC) GN=rtcA PE=3 SV=1
Length = 338
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 167/343 (48%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + IRAGR KPGL QHL + A +IC+
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGQPFTITGIRAGRAKPGLLRQHLTAVKAAAEICR 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLVFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I +H +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGVHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + +A+ L S+ + + + L D
Sbjct: 179 SLQLGERGNIVQMRGEVLLAG-----VPRHVAEREIATLAGSFSLHEQNI----HNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA GT V S H T I + E +F +IE
Sbjct: 287 QLVLPMALA-GTGEFTVAHPSCHLLTNIAVVERFLPVRFGLIE 328
>sp|Q8U0N7|RTCA_PYRFU RNA 3'-terminal phosphate cyclase OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rtcA PE=3
SV=1
Length = 342
Score = 168 bits (426), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 113/364 (31%), Positives = 178/364 (48%), Gaps = 33/364 (9%)
Query: 13 IDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRL 72
IDGS EGGGQILR ++ S + P+ + NIRA R PGL QHLN ++ K + ++
Sbjct: 4 IDGSYGEGGGQILRTSIALSAITGEPVKIINIRANRPNPGLRPQHLNAILALKKLANAKV 63
Query: 73 ENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNA 132
E A +GS E+ F PG + G D TAGS+TL++Q LP ++F+ + + GGT+
Sbjct: 64 EGAEVGSREVTFIPGELKGGEIRVDIGTAGSITLVLQALLPAMVFAKDTVEFKITGGTDV 123
Query: 133 DMAPPIDYYIHLWRPVFC-HFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELTQ 191
+PP+DY I++ +F +I +RRG +PKGGG V Y++P +
Sbjct: 124 SWSPPVDYLINV--TMFALRKIGIEGEIKLLRRGHYPKGGGIV------AGYVKP--WIE 173
Query: 192 RGELTA-VWGHAFVAGGVKMNT------AQTMADTAYDYLVKSYPDFKTKLKITTYQLSS 244
R EL A + + + G+ T A+ A A + L + K +++
Sbjct: 174 RKELIAEEFENIYKVSGISHATNLPAHVAERQAKAAMEELKVLGVPIEIKKEVS------ 227
Query: 245 DKAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQ 304
++G GSG+ ++A T R G G E G AA+EL S + C D+
Sbjct: 228 -HSLGPGSGIVVWAETEC-LRLGGDALGKKGKPAEEVGREAAQELLSQVKTKACVDKFLG 285
Query: 305 DQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGFV 364
DQ+I +A++ G +++V +I+ H T + + E F + K + E + V
Sbjct: 286 DQIIPFLAISGG--KIKVAEITKHLITNVWVVEQFFGKVFEV-----KGGVGEKGEVRVV 338
Query: 365 NKNW 368
K W
Sbjct: 339 RKAW 342
>sp|P46849|RTCA_ECOLI RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain K12)
GN=rtcA PE=1 SV=3
Length = 338
Score = 168 bits (425), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 167/343 (48%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + +IRAGR KPGL QHL + A +IC
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICG 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I IH +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGIHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + +A+ L S+ + + + L D
Sbjct: 179 TLQLGERGNIVQMRGEVLLAG-----VPRHVAEREIATLAGSFSLHEQNI----HNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASTAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA G V S H T I + E +F++IE
Sbjct: 287 QLVLPMALA-GAGEFTVAHPSCHLLTNIAVVERFLPVRFSLIE 328
>sp|B1X765|RTCA_ECODH RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain K12 /
DH10B) GN=rtcA PE=3 SV=1
Length = 338
Score = 168 bits (425), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 167/343 (48%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + +IRAGR KPGL QHL + A +IC
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICG 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I IH +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGIHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + +A+ L S+ + + + L D
Sbjct: 179 TLQLGERGNIVQMRGEVLLAG-----VPRHVAEREIATLAGSFSLHEQNI----HNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASTAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA G V S H T I + E +F++IE
Sbjct: 287 QLVLPMALA-GAGEFTVAHPSCHLLTNIAVVERFLPVRFSLIE 328
>sp|C4ZVX1|RTCA_ECOBW RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain K12 /
MC4100 / BW2952) GN=rtcA PE=3 SV=1
Length = 338
Score = 168 bits (425), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 167/343 (48%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + +IRAGR KPGL QHL + A +IC
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICG 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I IH +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGIHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + +A+ L S+ + + + L D
Sbjct: 179 TLQLGERGNIVQMRGEVLLAG-----VPRHVAEREIATLAGSFSLHEQNI----HNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASTAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA G V S H T I + E +F++IE
Sbjct: 287 QLVLPMALA-GAGEFTVAHPSCHLLTNIAVVERFLPVRFSLIE 328
>sp|B2U3M8|RTCA_SHIB3 RNA 3'-terminal phosphate cyclase OS=Shigella boydii serotype 18
(strain CDC 3083-94 / BS512) GN=rtcA PE=3 SV=1
Length = 338
Score = 168 bits (425), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 164/343 (47%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + +IRAGR KPGL QHL + A +IC+
Sbjct: 4 MIALDGAQGEGGGQILRAALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAAAEICR 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G + +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLVFRPGAVRGGEYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I IH +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGIHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + + +A A + + + L D
Sbjct: 179 TLQLGERGNIVQMRGEVLLAGVPRHVAEREIATLAGSFSLHEQ---------NIHNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA G V S H T I + E +F +IE
Sbjct: 287 QLVLPMALA-GAGEFTVAHPSCHLLTNIAVVERFLPVRFGLIE 328
>sp|O27937|RTCA_METTH RNA 3'-terminal phosphate cyclase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rtcA PE=3 SV=1
Length = 337
Score = 168 bits (425), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 174/346 (50%), Gaps = 13/346 (3%)
Query: 13 IDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRL 72
IDGS EGGG ++R++ + + R + V+NIRA R + GL+ QHL + I G L
Sbjct: 4 IDGSEGEGGGAVVRVSTALAAVTSRSVRVYNIRARRSRSGLSHQHLTAVRAVARISNGTL 63
Query: 73 ENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNA 132
+GS E+ F PG +T G F D KTAGS L++Q + S G+ + V GGT+
Sbjct: 64 RGDELGSMELEFSPGRVTGGTFNFDVKTAGSTGLVLQAIMVAAAASEGEIDVTVSGGTDV 123
Query: 133 DMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELTQR 192
AP DY + PV ++ I +RRG++P+GGG V+ + P + +RPI L +
Sbjct: 124 LWAPTCDYLREVTIPVL-EMMGYSARIEIIRRGYYPEGGGRVHAIIEPSE-LRPITL-EE 180
Query: 193 GELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIGNGS 252
E+ AV G + + + ++ A+ A++A L + D ++ + +G GS
Sbjct: 181 SEIHAVRGISH-SRNLPVHVAERQAESAMKILRGAGLDVDIMVE------DASGPVGRGS 233
Query: 253 GVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMA 312
G+ ++A +T R G P + G AA+EL + D + DQ+I MA
Sbjct: 234 GITLWAEGNT--RLGAVSLGKPGKRAEKVGSEAARELLGFIESGSPLDRYMGDQIIPYMA 291
Query: 313 LAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIEC 358
L G SRVR +++LH T I ++E +T +F + IE
Sbjct: 292 LT-GDSRVRTCELTLHAETNIILSEKITGRRFRVEGERGGPATIEV 336
>sp|Q8FCS8|RTCA_ECOL6 RNA 3'-terminal phosphate cyclase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=rtcA PE=3 SV=2
Length = 338
Score = 168 bits (425), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 165/343 (48%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ + +P + IRAGR KPGL QHL + A +IC+
Sbjct: 4 MIALDGAQGEGGGQILRSALSLPMITGQPFTITGIRAGRAKPGLLRQHLTAVKAAAEICR 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLVFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I +H +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLAR-----IGVHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + + +A A + + + L D
Sbjct: 179 SLQLGERGNIVQMRGEVLLAGVPRHVAEREIATLAGSFSLHEQ---------NIHNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA G V S H +T I + E +F++IE
Sbjct: 287 QLVLPMALA-GAGEFTVAHPSCHLQTNIAVVERFLPVRFSLIE 328
>sp|B1IP46|RTCA_ECOLC RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain ATCC
8739 / DSM 1576 / Crooks) GN=rtcA PE=3 SV=1
Length = 338
Score = 167 bits (424), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 167/343 (48%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + IRAGR KPGL QHL + A +IC+
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGQPFTITGIRAGRAKPGLLRQHLTAVKAAAEICR 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ + IH +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KMGIHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + +A+ L S+ + + + L D
Sbjct: 179 TLQLGERGNIVQMRGEVLLAG-----VPRHVAEREIATLAGSFSLHEQNI----HNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASTAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA G V S H T I + E +F++IE
Sbjct: 287 QLVLPMALA-GAGEFTVAHPSCHLLTNIAVVERFLPVRFSLIE 328
>sp|A8A5M8|RTCA_ECOHS RNA 3'-terminal phosphate cyclase OS=Escherichia coli O9:H4 (strain
HS) GN=rtcA PE=3 SV=1
Length = 338
Score = 167 bits (424), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 167/343 (48%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + IRAGR KPGL QHL + A +IC+
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGQPFTITGIRAGRAKPGLLRQHLTAVKAAAEICR 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ + IH +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KMGIHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + +A+ L S+ + + + L D
Sbjct: 179 TLQLGERGNIVQMRGEVLLAG-----VPRHVAEREIATLAGSFSLHEQNI----HNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASTAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA G V S H T I + E +F++IE
Sbjct: 287 QLVLPMALA-GAGEFTVAHPSCHLLTNIAVVERFLPVRFSLIE 328
>sp|Q31VL3|RTCA_SHIBS RNA 3'-terminal phosphate cyclase OS=Shigella boydii serotype 4
(strain Sb227) GN=rtcA PE=3 SV=2
Length = 338
Score = 167 bits (424), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 164/343 (47%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + +IRAGR KPGL QHL + A +IC+
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAAAEICR 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G + +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLVFRPGAVRGGEYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I IH +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGIHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + + +A A + + + L D
Sbjct: 179 TLQLGERGNIVQMRGEVLLAGVPRHVAEREIATLAGSFSLHEQ---------NIHNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA G V S H T I + E +F +IE
Sbjct: 287 QLVLPMALA-GAGEFTVAHPSCHLLTNIAVVERFLPVRFGLIE 328
>sp|B7L4U9|RTCA_ECO55 RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain 55989
/ EAEC) GN=rtcA PE=3 SV=1
Length = 338
Score = 167 bits (424), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 166/343 (48%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + +IRAGR KPGL QHL + A +IC
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICG 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G + +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLLFRPGTVRGGEYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I IH +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGIHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + +A+ L S+ + + + L D
Sbjct: 179 TLQLGERGNIVQMRGEVLLAG-----VPRHVAEREIATLAGSFSLHEQNI----HNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA G +V S H T I + E +F +IE
Sbjct: 287 QLVLPMALA-GAGEFKVAHPSCHLLTNIAVVERFLPVRFGLIE 328
>sp|B1LI80|RTCA_ECOSM RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain
SMS-3-5 / SECEC) GN=rtcA PE=3 SV=1
Length = 338
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/345 (31%), Positives = 167/345 (48%), Gaps = 22/345 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + P + IRAGR KPGL QHL + A +IC+
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGLPFTITGIRAGRAKPGLLRQHLTAVKAAAEICR 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ + IH +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KMGIHQQTTLIRHGFYPAGGGVVATEVSPVALFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + +A+ LV S+ + + + L D
Sbjct: 179 TLQLGERGNIVQMRGEVLLAG-----VPRHVAEREIATLVGSFSLHEQNI----HNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHE 350
QL++ MALA G V S H T I + E +F ++E +
Sbjct: 287 QLVLPMALA-GAGEFTVAHPSCHLLTNIAVVERFLPVRFGLVEAD 330
>sp|Q9YES0|RTCA_AERPE RNA 3'-terminal phosphate cyclase OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rtcA PE=3 SV=2
Length = 361
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 120/357 (33%), Positives = 177/357 (49%), Gaps = 15/357 (4%)
Query: 13 IDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRL 72
+DGS+ EGGGQILR A+ + +L RP+ + NIRA R PGL QHL + I GRL
Sbjct: 9 VDGSMGEGGGQILRTAVALAAVLGRPLRIVNIRAKRRPPGLRPQHLTAVRAVAAISGGRL 68
Query: 73 ENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNA 132
A +GST + F PG + G + D TAGSV LI+Q PLL +S ++ + GGT+
Sbjct: 69 RGAEVGSTSLEFTPGRVRGGRYRFDVGTAGSVALIIQALAPLLAYSDSPVEVELTGGTDV 128
Query: 133 DMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVT-PVQYIRPIELTQ 191
MAP IDY ++ + + I+I +RRG +P+GGG V V V P R +
Sbjct: 129 PMAPTIDYMREVFASILA-MLGYEIEIRVLRRGHYPRGGGRVVVRVPDPPGGFRARSFVE 187
Query: 192 RGELTAVW--GHAF-VAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAI 248
RG L V+ HA + G + A++ A LV+ ++I Y+ D +
Sbjct: 188 RGPLKGVYVRSHAVKLPGSIAERQARSAAS-----LVRERLGVDPIVEIEAYKPHRDPHL 242
Query: 249 GNGSGVYIFAATSTGARYSGGCNGSPRTSPGE-CGLNAAKELWSSLCENICFDEHTQDQL 307
G G+GV ++A G GG + + P E G AA+ L + D H D
Sbjct: 243 GPGTGVLVWAV--FGETVMGGDSIGKKGKPAEVVGREAAESLLEDMATGAALDRHMSDMA 300
Query: 308 IVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSA-KFNIIEHE-DKSCIIECQGMG 362
V +ALA G S V +++ H T + + +M ++ I+E ++ E +G G
Sbjct: 301 PVYLALAGGVSTVFGARLTGHASTILELLRIMVDGFEYRILEGGLERPFKAELRGAG 357
>sp|B7NMI4|RTCA_ECO7I RNA 3'-terminal phosphate cyclase OS=Escherichia coli O7:K1 (strain
IAI39 / ExPEC) GN=rtcA PE=3 SV=1
Length = 338
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/345 (31%), Positives = 164/345 (47%), Gaps = 22/345 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + P + IRAGR KPGL QHL + A +IC+
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGLPFTITGIRAGRAKPGLLRQHLTAVKAAAEICR 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I IH +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGIHQQTTLLRHGFYPAGGGVVATEVSPVTSFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + + +A A + + + L D
Sbjct: 179 TLQLGERGNIVRLRGEVLLAGVPRHVAEREIATLAASFSLHEQ---------NIHNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHE 350
QL++ MALA G V S H T I + E +F ++E +
Sbjct: 287 QLVLPMALA-GAGEFTVAHPSCHLLTNIAVVERFLPVRFGLVEAD 330
>sp|B6YSJ5|RTCA_THEON RNA 3'-terminal phosphate cyclase OS=Thermococcus onnurineus
(strain NA1) GN=rtcA PE=3 SV=1
Length = 340
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/342 (33%), Positives = 169/342 (49%), Gaps = 29/342 (8%)
Query: 13 IDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRL 72
IDGS EGGGQILR ++ S + +P+ ++NIRA R PGL QH++G++ K++ ++
Sbjct: 6 IDGSYGEGGGQILRTSVALSVITGKPVRIYNIRANRPNPGLRPQHMHGILALKELSGAKV 65
Query: 73 ENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNA 132
+ A +GST + FYPG + KTAGSVTL++Q LP + F G + + GGT+
Sbjct: 66 KGAQVGSTVLEFYPGRARPRHIRVPIKTAGSVTLVLQALLPAMAFIGGSFE--ITGGTDV 123
Query: 133 DMAPPIDYYIHLWRPVFC-HFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELTQ 191
+PP+DY H+ +F +I RRG +PKGGG V V P + +P+
Sbjct: 124 PWSPPVDYLRHV--TLFALEKMGLRAEIEIKRRGHYPKGGGLVVGRVEPWEERKPL---- 177
Query: 192 RGELTAVWGHAFVAGGVKMNT------AQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
+ W H + GG+ T A A A + L + Y + I Y+ S
Sbjct: 178 ---VALEWRHIELFGGISHATNLPEHVASRQAKAARERLSEFY-----DVPINIYEEVS- 228
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGEC-GLNAAKELWSSLCENICFDEHTQ 304
+++G GSG+ ++A T R G G R P E G AA EL L D
Sbjct: 229 RSLGPGSGIVVWAETDV-LRLGGDALGK-RGKPAEAVGREAADELLEQLTSRAAVDRFLG 286
Query: 305 DQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNI 346
DQL+ +A A G ++V +I+ H T + + E F +
Sbjct: 287 DQLVPFLAFAGG--EIKVAEITNHLVTNVWVVEQFLGKIFEV 326
>sp|Q32AN4|RTCA_SHIDS RNA 3'-terminal phosphate cyclase OS=Shigella dysenteriae serotype
1 (strain Sd197) GN=rtcA PE=3 SV=2
Length = 342
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 166/343 (48%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQILR A+ S + +P + IRAGR KPGL QHL + A +IC+
Sbjct: 4 MIALDGAQGEGGGQILRSALSLSMITGQPFTITGIRAGRAKPGLLRQHLTAVKAATEICR 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLVFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I IH +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGIHQQTTLLRHGFYPVGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + +A+ L S+P + + + L D
Sbjct: 179 TLQLGERGNIVQMRGEVLLAG-----VPRHVAEREIATLAGSFPLHEQYI----HNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKHVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA G + V S H T I + E +F + E
Sbjct: 287 QLVLPMALA-GAGQFTVAHPSCHLLTNIAVVERFLPVRFTLAE 328
>sp|O59198|RTCA_PYRHO RNA 3'-terminal phosphate cyclase OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rtcA PE=3 SV=2
Length = 341
Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 108/339 (31%), Positives = 174/339 (51%), Gaps = 16/339 (4%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ IDGS EGGGQILR ++ S + P+ + NIRA R PGL QHL+ ++ K +
Sbjct: 1 MITIDGSYGEGGGQILRTSVALSTITGEPVRIVNIRANRPNPGLRPQHLHAILALKHLAN 60
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
++ AH+GS E++F P + + D TAGS+TL++Q LP ++F+ + + + GG
Sbjct: 61 AEVKGAHVGSRELVFIPKKLEAKEISIDIGTAGSITLVLQALLPAMVFAREKVKFRITGG 120
Query: 130 TNADMAPPIDYYIHLWRPVFC-HFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIE 188
T+ +PP+DY ++ +F + +I +RRG +PKGGG V V P R +
Sbjct: 121 TDVSWSPPVDYLSNV--TLFALEKIGIHGEIRVIRRGHYPKGGGIVEGYVEPWNEKRELV 178
Query: 189 LTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAI 248
+ + + G + A + + A+ A A D L++ K ++I T ++I
Sbjct: 179 AKEYSRIIKIEGISH-ATNLPSHVAERQARAAKDELLQ----LKVPIEIRT---EISRSI 230
Query: 249 GNGSGVYIFAATSTGARYSGGCNGSPRTSPGE-CGLNAAKELWSSLCENICFDEHTQDQL 307
G GSG+ ++A T R G G + P E G AA+EL L C D+ DQL
Sbjct: 231 GPGSGIVVWAETDC-LRLGGDALGK-KGKPAEIVGKEAAQELLDQLKPGHCVDKFLGDQL 288
Query: 308 IVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNI 346
I +A + G + V +I+ H +T I + E F++
Sbjct: 289 IPFLAFSGGV--IWVSEITNHLKTNIWVVESFLGRIFDV 325
>sp|B5YTX2|RTCA_ECO5E RNA 3'-terminal phosphate cyclase OS=Escherichia coli O157:H7
(strain EC4115 / EHEC) GN=rtcA PE=3 SV=1
Length = 342
Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 163/343 (47%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQI+R A+ S + +P + IRAGR KPGL QHL + A +IC
Sbjct: 4 MIALDGAQGEGGGQIMRSALSLSMITGQPFTITGIRAGRAKPGLLRQHLTAVKAATEICG 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLVFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I IH +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGIHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + + +A A + + + L D
Sbjct: 179 TLQLGERGNIVQMRGEVLLAGVPRHVAEREIATLAASFSLHEQ---------NIHNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA G + V S H T I + E +F + E
Sbjct: 287 QLVLPMALA-GAGQFTVAHPSCHLLTNIAVVERFLPVRFTLAE 328
>sp|P58127|RTCA_ECO57 RNA 3'-terminal phosphate cyclase OS=Escherichia coli O157:H7
GN=rtcA PE=3 SV=1
Length = 342
Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 106/343 (30%), Positives = 163/343 (47%), Gaps = 22/343 (6%)
Query: 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQ 69
++ +DG+ EGGGQI+R A+ S + +P + IRAGR KPGL QHL + A +IC
Sbjct: 4 MIALDGAQGEGGGQIMRSALSLSMITGQPFTITGIRAGRAKPGLLRQHLTAVKAATEICG 63
Query: 70 GRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGG 129
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GG
Sbjct: 64 ATVEGAELGSQRLVFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGG 123
Query: 130 TNADMAPPIDYYIHLWRPVFCHFFNFNIDIHD----VRRGFFPKGGGEVNVDVTPVQYIR 185
T+ APP D+ + P+ I IH +R GF+P GGG V +V+PV
Sbjct: 124 TDNPSAPPADFIRRVLEPLLA-----KIGIHQQTTLLRHGFYPAGGGVVATEVSPVASFN 178
Query: 186 PIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245
++L +RG + + G +AG + + +A A + + + L D
Sbjct: 179 TLQLGERGNIVQMRGEVLLAGVPRHVAEREIATLAASFSLHEQ---------NIHNLPRD 229
Query: 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQD 305
+ GN + + + T + G R S KE+ L E+ D
Sbjct: 230 QGPGNTVSLEVESENITERFF---VVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEYLAD 286
Query: 306 QLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIE 348
QL++ MALA G + V S H T I + E +F + E
Sbjct: 287 QLVLPMALA-GAGQFTVAHPSCHLLTNIAVVERFLPVRFTLAE 328
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,499,027
Number of Sequences: 539616
Number of extensions: 5979951
Number of successful extensions: 11378
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11036
Number of HSP's gapped (non-prelim): 108
length of query: 374
length of database: 191,569,459
effective HSP length: 119
effective length of query: 255
effective length of database: 127,355,155
effective search space: 32475564525
effective search space used: 32475564525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)