Query psy2632
Match_columns 374
No_of_seqs 128 out of 567
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 21:08:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03399 RNA_3prim_cycl RNA 3 100.0 6E-107 1E-111 794.6 40.5 325 11-345 1-326 (326)
2 PRK04204 RNA 3'-terminal-phosp 100.0 5E-106 1E-110 791.4 43.4 332 9-351 1-335 (343)
3 TIGR03400 18S_RNA_Rcl1p 18S rR 100.0 2E-104 5E-109 786.0 44.2 345 21-373 5-360 (360)
4 cd00874 RNA_Cyclase_Class_II R 100.0 2E-104 5E-109 776.1 41.0 323 13-347 1-325 (326)
5 COG0430 RCL1 RNA 3'-terminal p 100.0 2E-104 5E-109 762.2 36.5 337 9-356 1-338 (341)
6 KOG3980|consensus 100.0 7E-103 1E-107 745.7 37.9 352 12-369 2-359 (361)
7 cd00295 RNA_Cyclase RNA 3' pho 100.0 1E-99 2E-104 747.3 38.3 330 13-348 1-338 (338)
8 cd00875 RNA_Cyclase_Class_I RN 100.0 4E-96 9E-101 722.5 39.7 322 20-347 8-340 (341)
9 PF01137 RTC: RNA 3'-terminal 100.0 5E-81 1.1E-85 583.8 19.3 226 13-348 1-228 (228)
10 cd01553 EPT_RTPC-like This dom 100.0 2.9E-35 6.2E-40 273.0 19.4 174 13-188 1-175 (211)
11 PF05189 RTC_insert: RNA 3'-te 99.9 5.8E-23 1.2E-27 170.1 11.7 103 190-296 1-103 (103)
12 TIGR01356 aroA 3-phosphoshikim 78.0 30 0.00065 34.8 11.9 119 21-155 77-197 (409)
13 cd01556 EPSP_synthase EPSP syn 76.0 62 0.0014 32.3 13.5 131 9-155 58-200 (409)
14 PRK12830 UDP-N-acetylglucosami 72.9 25 0.00055 35.5 9.8 109 25-155 95-205 (417)
15 PRK14806 bifunctional cyclohex 72.7 49 0.0011 36.3 12.6 114 20-155 393-509 (735)
16 PRK11860 bifunctional 3-phosph 72.4 58 0.0013 35.5 12.9 114 21-155 23-140 (661)
17 PRK11861 bifunctional prephena 71.6 49 0.0011 36.1 12.2 97 21-133 259-358 (673)
18 cd01556 EPSP_synthase EPSP syn 66.0 35 0.00076 34.1 9.1 107 28-155 17-126 (409)
19 PRK02427 3-phosphoshikimate 1- 65.8 86 0.0019 31.7 12.0 118 22-155 93-212 (435)
20 PRK02427 3-phosphoshikimate 1- 61.9 61 0.0013 32.9 10.0 115 10-155 16-137 (435)
21 PF00275 EPSP_synthase: EPSP s 61.8 76 0.0016 32.3 10.7 117 20-156 90-209 (419)
22 COG0128 AroA 5-enolpyruvylshik 61.4 2.1E+02 0.0045 29.8 14.1 141 21-194 93-239 (428)
23 cd01555 UdpNAET UDP-N-acetylgl 57.9 42 0.00091 33.6 8.0 81 59-155 115-196 (400)
24 PRK11860 bifunctional 3-phosph 55.7 1.7E+02 0.0036 32.0 12.6 123 18-155 93-218 (661)
25 TIGR01072 murA UDP-N-acetylglu 55.6 58 0.0013 32.8 8.6 79 60-155 126-206 (416)
26 PRK11861 bifunctional prephena 54.2 97 0.0021 33.9 10.5 119 22-155 332-456 (673)
27 PRK09369 UDP-N-acetylglucosami 52.3 1.5E+02 0.0032 30.0 11.0 110 24-155 95-207 (417)
28 cd01554 EPT-like Enol pyruvate 52.1 2.4E+02 0.0053 28.2 12.4 109 28-155 232-343 (408)
29 cd01554 EPT-like Enol pyruvate 51.7 1.5E+02 0.0032 29.8 10.7 103 10-133 4-109 (408)
30 PLN02338 3-phosphoshikimate 1- 51.6 1.3E+02 0.0027 30.8 10.4 118 21-155 20-146 (443)
31 TIGR01356 aroA 3-phosphoshikim 50.0 1.5E+02 0.0032 29.8 10.5 90 26-132 13-103 (409)
32 PLN02338 3-phosphoshikimate 1- 47.4 41 0.00088 34.5 6.0 60 299-362 20-79 (443)
33 TIGR01072 murA UDP-N-acetylglu 42.7 45 0.00099 33.5 5.4 58 300-363 21-78 (416)
34 COG0128 AroA 5-enolpyruvylshik 37.5 66 0.0014 33.4 5.6 59 299-363 21-79 (428)
35 cd01555 UdpNAET UDP-N-acetylgl 34.3 75 0.0016 31.8 5.4 46 300-346 10-55 (400)
36 PRK09369 UDP-N-acetylglucosami 33.6 89 0.0019 31.6 5.9 58 300-362 21-78 (417)
37 PF00275 EPSP_synthase: EPSP s 32.8 89 0.0019 31.8 5.7 59 300-361 16-74 (419)
38 PLN00218 predicted protein; Pr 30.9 32 0.0007 28.7 1.7 22 99-120 57-78 (151)
39 PRK14806 bifunctional cyclohex 30.6 1.1E+02 0.0023 33.7 6.3 58 300-362 321-378 (735)
40 PRK12830 UDP-N-acetylglucosami 26.6 1.5E+02 0.0034 29.8 6.2 55 301-361 22-76 (417)
41 cd01987 USP_OKCHK USP domain i 26.5 2.9E+02 0.0064 22.0 6.9 37 10-48 3-39 (124)
42 PF03284 PHZA_PHZB: Phenazine 22.7 2.5E+02 0.0054 25.0 5.8 32 331-362 70-105 (162)
No 1
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=100.00 E-value=5.7e-107 Score=794.56 Aligned_cols=325 Identities=42% Similarity=0.710 Sum_probs=317.5
Q ss_pred EEecCCccCCchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCccc
Q psy2632 11 LNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNIT 90 (374)
Q Consensus 11 i~iDGs~~EGGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~ 90 (374)
|+||||+||||||+||+|+|||+||||||+|+|||++|+||||++||+++|++++++|||+++|++++||+|+|.||.++
T Consensus 1 i~iDGs~~eGGGQilR~alaLS~ltgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~i~ 80 (326)
T TIGR03399 1 IEIDGSYGEGGGQILRTALSLSALTGKPVRIYNIRANRPKPGLAPQHLTAVKAAAEICNAEVEGAELGSTELEFIPGKIR 80 (326)
T ss_pred CEecCCCccCcHHHHHHHHHHHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cccceeEeeeecCCCCC
Q psy2632 91 SGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFPK 169 (374)
Q Consensus 91 ~g~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~~i~i~~~krGf~P~ 169 (374)
+|+|++||+|||||+||||++||+++|++.|++|+|+||||++||||+||+++||+|+|++| ++++++| .||||||+
T Consensus 81 gG~~~~d~gtagSi~l~lq~lLp~l~f~~~p~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~v--~rRG~yP~ 158 (326)
T TIGR03399 81 GGDYRFDIGTAGSVTLVLQTLLPALLFANGPSRVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAELEL--LRRGFYPR 158 (326)
T ss_pred CCeEEEeCCCChhhHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEE--EeCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999 99999999
Q ss_pred CCcEEEEEEccCCCCcceEEeeCCceeEEEEEEEEeCCCcccHHHHHHHHHHHHHHhhCCCCCcceEEEEeecCCCCCcC
Q psy2632 170 GGGEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIG 249 (374)
Q Consensus 170 GgGeV~~~i~p~~~l~~i~l~~~g~i~~Irg~~~~s~~l~~~ia~r~~~~a~~~L~~~~~~~~~~i~~~~~~~~~~~~~~ 249 (374)
|||||.++++|+++++|++|+++|++++|||++++++ +|+++++||+++|++.|++.+++++ ++++.. +.+.+
T Consensus 159 GGGeV~~~i~p~~~l~~i~l~~~G~i~~i~g~~~~~~-l~~~va~r~~~~a~~~L~~~~~~~~--i~~~~~----~~~~s 231 (326)
T TIGR03399 159 GGGEVRLRVEPVKKLKPLELEERGELLRVSGIAHAAN-LPAHVAERMAKAAREELRKLGLDPE--IEIEVL----DKGLG 231 (326)
T ss_pred CCEEEEEEEccccCCCceeeecCCceEEEEEEEEEcc-CCHHHHHHHHHHHHHHHHhhCCCce--EEEEec----cCCCC
Confidence 9999999999999999999999999999999999987 9999999999999999999999888 887765 35679
Q ss_pred CceEEEEEEEeccCeEEEEeccCCCCCChhHHHHHHHHHHHHHhccCCcCCccChhHHHHHHHhcCCcceEEeCCCChhH
Q psy2632 250 NGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQISLHT 329 (374)
Q Consensus 250 ~G~~i~l~Aet~~g~~~g~~~lg~~g~~~E~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~g~S~i~~g~~t~ht 329 (374)
||++++|||||+ ||++|++++|+++++||+||++||++|++|+++|||||+||||||++|||||+|+|+++++++|+|+
T Consensus 232 ~G~~i~L~aet~-g~~~~~~~lg~~g~~aE~vg~~aa~~L~~~i~~g~~vD~~lqdqlll~mALa~g~S~i~~~~lT~h~ 310 (326)
T TIGR03399 232 PGSGIVLWAETE-HCRLGFSALGEKGKSAEKVGEEAAEQLLAELRSGAAVDEHLADQLILYMALASGESRFTTSELTMHL 310 (326)
T ss_pred CcEEEEEEEEEC-CeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhcCCCceEEecCCCHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEE
Q psy2632 330 RTAIHIAELMTSAKFN 345 (374)
Q Consensus 330 ~t~i~v~~~~~gv~f~ 345 (374)
+|++|++++|++++|+
T Consensus 311 ~t~l~v~~~f~~v~f~ 326 (326)
T TIGR03399 311 RTNIWVIEQFLPVRFE 326 (326)
T ss_pred HHHHHHHHHHhCCeeC
Confidence 9999999999999985
No 2
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=100.00 E-value=5.3e-106 Score=791.44 Aligned_cols=332 Identities=37% Similarity=0.641 Sum_probs=321.1
Q ss_pred ceEEecCCccCCchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCc
Q psy2632 9 DVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGN 88 (374)
Q Consensus 9 ~~i~iDGs~~EGGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~ 88 (374)
.||+||||+||||||+||+|++||+||||||+|+|||++|++|||++||+++|++++++|||+++|++++||+|+|.||.
T Consensus 1 ~mi~idGs~~eGGgQilR~alaLS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~l~~~i~~~~v~g~~~gst~l~f~Pg~ 80 (343)
T PRK04204 1 RMIEIDGSYGEGGGQILRTALALSAITGKPFRITNIRANRPNPGLLRQHLTAVKAAAEICNAEVEGAELGSQELVFIPGP 80 (343)
T ss_pred CeEEEeCCcccccHHHHHHHHHHHHhhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEEeeecCceEEEEECCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cccceeEeeeecCCC
Q psy2632 89 ITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFF 167 (374)
Q Consensus 89 i~~g~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~~i~i~~~krGf~ 167 (374)
+++|+|++||+|||||+||||++||+++|+++|++|+|+||||++||||+||+++||+|+|++| ++++++| .|||||
T Consensus 81 i~~g~~~~d~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~i--~rRG~y 158 (343)
T PRK04204 81 IRGGDYRFDIGTAGSITLVLQTVLPALLFADGPSRVTITGGTDVPWAPPIDYIRRVTLPLLRRMGIEAEIEL--LRRGFY 158 (343)
T ss_pred ccCCeEEEecCCCcchhhHHHHHHHHHhcCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCcEEEEE--EeCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 9999999 999999
Q ss_pred CCCCcEEEEEEccCCCCcceEEeeCCceeEEEEEEEEeCCCcccHHHHHHHHHHH--HHHhhCCCCCcceEEEEeecCCC
Q psy2632 168 PKGGGEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYD--YLVKSYPDFKTKLKITTYQLSSD 245 (374)
Q Consensus 168 P~GgGeV~~~i~p~~~l~~i~l~~~g~i~~Irg~~~~s~~l~~~ia~r~~~~a~~--~L~~~~~~~~~~i~~~~~~~~~~ 245 (374)
|+|||||.++|+| .+++|++|+++|++++|||++++++ +|+++++||+++|++ .|+..+++++ ++++.. +
T Consensus 159 P~GGGeV~~~i~p-~~l~pi~l~e~G~i~~irg~~~~~~-l~~~ia~R~~~~a~~~~~l~~~~~~~~--i~~~~~----~ 230 (343)
T PRK04204 159 PAGGGEVALEVEP-SKLRPLELLERGELLRIRGISHVAN-LPEHVAERQAKAAAELLALSLGLIEIE--INVEEL----S 230 (343)
T ss_pred CCCCeEEEEEEcc-CCccceeeccCCCcEEEEEEEEecC-CCHHHHHHHHHHHhhhhhhhccCCCce--eEEeec----c
Confidence 9999999999999 4899999999999999999999987 999999999999999 8988888877 766542 4
Q ss_pred CCcCCceEEEEEEEeccCeEEEEeccCCCCCChhHHHHHHHHHHHHHhccCCcCCccChhHHHHHHHhcCCcceEEeCCC
Q psy2632 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQI 325 (374)
Q Consensus 246 ~~~~~G~~i~l~Aet~~g~~~g~~~lg~~g~~~E~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~g~S~i~~g~~ 325 (374)
++.+||++++|||||+ ||+++++++|++|++||+||++||++|++|+++|||||+|+|||+++|||||+|+|+++++++
T Consensus 231 ~~~s~G~gi~L~aet~-g~~~~~~~lg~~g~~aE~vg~~aa~~Ll~~i~~gg~vD~~lqdqll~~mALa~g~S~i~~~~l 309 (343)
T PRK04204 231 RGLGPGSGIVLWAESE-HITEGFDALGERGKPAEVVGEEAAEELLRYLASGAAVDEHLADQLILPMALAGGEGSFTVAEL 309 (343)
T ss_pred CCCCCceEEEEEEEEC-CEEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCccChhHHHHHHHHHHhCCCCceEEecCC
Confidence 5789999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCceEEEEecCC
Q psy2632 326 SLHTRTAIHIAELMTSAKFNIIEHED 351 (374)
Q Consensus 326 t~ht~t~i~v~~~~~gv~f~i~~~~~ 351 (374)
|+|++|++|++++|++++|++++.++
T Consensus 310 T~h~~t~l~vi~~f~~v~f~v~~~~~ 335 (343)
T PRK04204 310 TSHLLTNIWVVEKFLPVKFEVEEYDG 335 (343)
T ss_pred CHHHHHHHHHHHHhcCcEEEEEEcCC
Confidence 99999999999999999999988654
No 3
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
Probab=100.00 E-value=2.3e-104 Score=785.98 Aligned_cols=345 Identities=26% Similarity=0.420 Sum_probs=330.8
Q ss_pred chhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCcccCccEEEccCC
Q psy2632 21 GGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSKT 100 (374)
Q Consensus 21 GGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~~g~~~~d~~t 100 (374)
|+|+||+||+||+||||||+|+|||++|+||||++||+++|++++++|+|+++|++++||+|+|.||.+++|+|+|||+|
T Consensus 5 ~~QilR~alaLS~itgkpv~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~i~gG~~~~d~gt 84 (360)
T TIGR03400 5 GSRNFRQRLVLSTLSGKPVRITKIRSDDENPGLRDYEVSFLRLLEKVTNGSKIEISYTGTTVIYKPGLITGGSVTHECPT 84 (360)
T ss_pred chHHHHHHHHHHHhcCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECCcccCCeEEEeCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-c---ccceeEeeeecCCCCCCCcEEEE
Q psy2632 101 AGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-F---NFNIDIHDVRRGFFPKGGGEVNV 176 (374)
Q Consensus 101 agSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~---~~~i~i~~~krGf~P~GgGeV~~ 176 (374)
||||+||||++||+++|++.|++|+|+||||++||||+||+++||+|+|++| + +++++| .||||||+|||||.+
T Consensus 85 agSitl~lq~lLp~~lf~~~~~~l~l~GgT~v~~sPsvDy~~~v~lp~l~~~G~~~~~~~l~l--~~RG~yP~GgGeV~~ 162 (360)
T TIGR03400 85 TRGIGYYLEPLLLLAPFSKKPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGIPDEGLELKI--LKRGAAPLGGGEVEL 162 (360)
T ss_pred CcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCceEEEE--EeccccCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999999 9 899999 999999999999999
Q ss_pred EEccCCCCcceEEeeCCceeEEEEEEEEeCCCcccHHHHHHHHHHHHHHhhCCCCCcceEEEEeecCCCCCcCCceEEEE
Q psy2632 177 DVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIGNGSGVYI 256 (374)
Q Consensus 177 ~i~p~~~l~~i~l~~~g~i~~Irg~~~~s~~l~~~ia~r~~~~a~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~G~~i~l 256 (374)
+++|+++++|++|+++|++++|||++++++ +|+++++||+++|++.|++.+++++ ++++.. ...+.+.+||++++|
T Consensus 163 ~~~p~~~l~~i~l~~~G~v~~irg~~~~~~-l~~~v~~r~~~~a~~~L~~~~~~~~--i~~~~~-~~~~~~~~~G~~i~L 238 (360)
T TIGR03400 163 RCPVIKQLKTIHLTERGKVKRIRGVAYSTR-VSPSLANRMIDAARGVLNNLLPDVY--ITTDVR-KGKNSGKSPGYGLSL 238 (360)
T ss_pred EEcCccCccceEEEcCCCcEEEEEEEEEcc-CCHHHHHHHHHHHHHHHHhhCCCcE--EEEEec-ccccCCCCCCeEEEE
Confidence 999999999999999999999999999887 9999999999999999999999988 888844 333677899999999
Q ss_pred EEEeccCeEEEEeccCCC--CCChhHHHHHHHHHHHHHhccCCcCCccChhHHHHHHHhc-CCcceEEeCCCChhHHHHH
Q psy2632 257 FAATSTGARYSGGCNGSP--RTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALA-KGTSRVRVGQISLHTRTAI 333 (374)
Q Consensus 257 ~Aet~~g~~~g~~~lg~~--g~~~E~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa-~g~S~i~~g~~t~ht~t~i 333 (374)
|||+++||++|+|++|++ +.+||+||++||++|++||++|||||+||||||++||||| +|+|+++++++|+|++|++
T Consensus 239 ~ae~~~g~~~g~~~lg~~~~g~~aE~vg~~aa~~L~~~i~~gg~vD~~lqdqll~~mALa~~~~S~i~~~~lt~h~~t~l 318 (360)
T TIGR03400 239 VAETTNGCIISAEAVSSPGEGSLPEDLGKRAAYLLLEEIYRGGCVDSTHQPLALLLMALGQEDVSKLRLGKLSEYTVEFL 318 (360)
T ss_pred EEEeCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHHhcCCccChhHHHHHHHHHHhCCCCcceEEecCCCHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999 6789999999999999999
Q ss_pred HHHHHhcCceEEEEecC--C--CeEEEEEEeeeccccccccccC
Q psy2632 334 HIAELMTSAKFNIIEHE--D--KSCIIECQGMGFVNKNWGRKTF 373 (374)
Q Consensus 334 ~v~~~~~gv~f~i~~~~--~--~~~~i~c~G~G~~n~~~~~k~~ 373 (374)
|++|+|+|++|++++.+ + +.++|+|.|+||+|++ ||++
T Consensus 319 ~vi~~f~~v~f~i~~~~~~~~~~~~~i~~~G~G~~n~~--~~~~ 360 (360)
T TIGR03400 319 RDLKEFFGVTFKIKDDDSENGSGKVLLSCVGIGYTNVS--KKIA 360 (360)
T ss_pred HHHHHhcCCEEEEEEcccCCCCceEEEEEEeeeeeccc--cccC
Confidence 99999999999998753 3 6789999999999955 6653
No 4
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=100.00 E-value=2.4e-104 Score=776.10 Aligned_cols=323 Identities=39% Similarity=0.645 Sum_probs=313.8
Q ss_pred ecCCccCCchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCcccCc
Q psy2632 13 IDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSG 92 (374)
Q Consensus 13 iDGs~~EGGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~~g 92 (374)
||||+||||||+||+|++||+|+||||+|+|||++|++|||++||+++|++++++|||+++|++++||+|+|.||.+++|
T Consensus 1 iDGs~~eGGgQilR~alaLS~ltg~pv~I~nIR~~r~~PGL~~qh~~~l~ll~~i~~g~~~g~~~gst~l~f~Pg~i~gG 80 (326)
T cd00874 1 IDGSYGEGGGQILRTALALSAVTGKPVRIVNIRANRSNPGLSRQHLTAVRAAARICNAEVEGAELGSTELEFEPGKIKGG 80 (326)
T ss_pred CCCCcccCchHHHHHHHHHHHHhCCCEEEEEeccCCCCCCchHHHHHHHHHHHHHcCCeEeeeecCceEEEEECCCccCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cccceeEeeeecCCCCCCC
Q psy2632 93 NFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFPKGG 171 (374)
Q Consensus 93 ~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~~i~i~~~krGf~P~Gg 171 (374)
+|++||+|||||+||||++||+++|++.|++|+|+||||++||||+||+++||+|+|++| ++++++| .||||||+||
T Consensus 81 ~~~~d~~tagsi~l~lq~lLp~~~f~~~~~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v--~rRG~yP~Gg 158 (326)
T cd00874 81 DYEFDIGTAGSITLVLQTLLPALLFADGPSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAELEV--LRRGFYPRGG 158 (326)
T ss_pred cEEEeCCCCcchHHHHHHHHHHHhcCCCCEEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEE--EeCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999 9999999999
Q ss_pred cEEEEEEccCCCCcceEEeeCCceeEEEEEEEEeCCCcccHHHHHHHHHHHHHHh-hCCCCCcceEEEEeecCCCCCcCC
Q psy2632 172 GEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVK-SYPDFKTKLKITTYQLSSDKAIGN 250 (374)
Q Consensus 172 GeV~~~i~p~~~l~~i~l~~~g~i~~Irg~~~~s~~l~~~ia~r~~~~a~~~L~~-~~~~~~~~i~~~~~~~~~~~~~~~ 250 (374)
|||.++|+|+++++|+++.++|++++|||++++++ +|+++++||+++|++.|++ ..+|++ ++.+.. ++.+|
T Consensus 159 GeV~~~v~p~~~l~~i~l~~~g~i~~irg~~~~~~-l~~~va~r~~~~a~~~L~~~~~~dv~--i~~~~~-----~~~s~ 230 (326)
T cd00874 159 GEVVLTVEPSKLLPPLLLEERGEIEKIRGISHAAN-LPPHVAERQAEAAAALLRKALGLQIE--IEPEDQ-----SALGP 230 (326)
T ss_pred EEEEEEEecccCCCcceeecCCCeEEEEEEEEEcc-CCHHHHHHHHHHHHHHHhhccCCCeE--EEEEec-----CCCCC
Confidence 99999999999999999999999999999999988 9999999999999999998 666766 666543 26799
Q ss_pred ceEEEEEEEeccCeEEEEeccCCCCCChhHHHHHHHHHHHHHhccCCcCCccChhHHHHHHHhcCCcceEEeCCCChhHH
Q psy2632 251 GSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQISLHTR 330 (374)
Q Consensus 251 G~~i~l~Aet~~g~~~g~~~lg~~g~~~E~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~g~S~i~~g~~t~ht~ 330 (374)
|++++|||||++ |+++++++|+++++||+||++||++|++++++|||||+|+||||++|||||+ +|+++++++|+|++
T Consensus 231 G~~i~L~aet~~-~~~~~~~lg~~g~~aE~vg~~aa~~Ll~~i~~gg~vD~~lqdqlll~mALa~-~s~i~~~~lT~h~~ 308 (326)
T cd00874 231 GSGIVLWAEYEH-SRLGFSALGKKGVPAEKVGEEAAEELLAYLSSGAAVDEHLADQLIPFMALAG-GSEFRTGELTLHLQ 308 (326)
T ss_pred CEEEEEEEEECc-EEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCCccChhHHHHHHHHHHhcC-CceEEecCCCHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHhcCceEEEE
Q psy2632 331 TAIHIAELMTSAKFNII 347 (374)
Q Consensus 331 t~i~v~~~~~gv~f~i~ 347 (374)
|++|++|+|+|++|+|+
T Consensus 309 t~l~vi~~f~~v~f~i~ 325 (326)
T cd00874 309 TNIWVIEKFLGVKFRIE 325 (326)
T ss_pred HHHHHHHHhcCcEEEEe
Confidence 99999999999999995
No 5
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=100.00 E-value=2.1e-104 Score=762.18 Aligned_cols=337 Identities=38% Similarity=0.624 Sum_probs=321.8
Q ss_pred ceEEecCCccCCchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCc
Q psy2632 9 DVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGN 88 (374)
Q Consensus 9 ~~i~iDGs~~EGGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~ 88 (374)
.||+||||+||||||+||+||+||++||+||||.|||++|+||||++||+++|++++++|||++.|+++|||++.|.||.
T Consensus 1 ~~i~iDGs~geGGGQilRtal~LS~ltG~pvrI~nIRa~R~~PGL~~QHltaVra~~~i~~a~v~G~e~GS~~l~F~Pg~ 80 (341)
T COG0430 1 RMIEIDGSYGEGGGQILRTALALSALTGKPVRIENIRAGRANPGLKRQHLTAVRAAAEICNAEVEGAELGSTELVFRPGK 80 (341)
T ss_pred CeeecccccccCCceeehHHHHHHHhcCCceEEEEEccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeeccceEEEEeccc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cccceeEeeeecCCC
Q psy2632 89 ITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFF 167 (374)
Q Consensus 89 i~~g~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~~i~i~~~krGf~ 167 (374)
+++|+|++||+|||||+||||++||+++|+++|++++++||||++|||++||+++||+|+|+|| +.+++++ .|||||
T Consensus 81 i~gG~~~~digTAGsi~LvlQtlLp~~~fa~~~~~i~v~GGTdv~~aP~vDyir~v~lp~L~k~G~~~~l~v--lkRG~y 158 (341)
T COG0430 81 IRGGDYRVDIGTAGSITLVLQTLLPLLLFADGPSRITVTGGTDVPWAPPVDYIRRVTLPVLRKMGIECELEV--LKRGFY 158 (341)
T ss_pred eeCceEEEEecCCCceeeeHHHHHHHhhcCCCCeEEEEECccCCCCCCCcchhhhhHHHHHHhhccceEEEE--EecccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 9999999 999999
Q ss_pred CCCCcEEEEEEccCCCCcceEEeeCCceeEEEEEEEEeCCCcccHHHHHHHHHHHHHHhhCCCCCcceEEEEeecCCCCC
Q psy2632 168 PKGGGEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKA 247 (374)
Q Consensus 168 P~GgGeV~~~i~p~~~l~~i~l~~~g~i~~Irg~~~~s~~l~~~ia~r~~~~a~~~L~~~~~~~~~~i~~~~~~~~~~~~ 247 (374)
|+|||||.++|+|.....++++.++|++.+|+|++++++ +|+|+|+||+++|++.|++...+++ |+++..+. .
T Consensus 159 P~GGGeV~~~V~p~~~~~~l~l~e~g~i~~v~Gia~~~~-lp~hvAeRqa~~A~~~L~~~~~~v~--i~~~~~~~----~ 231 (341)
T COG0430 159 PRGGGEVLLTVEPPKEKLPLHLTERGEIEKVRGIAHSTN-LPPHVAERQAEAAKELLGKLGLEVE--IYTEVRRG----G 231 (341)
T ss_pred CCCCcEEEEEEcCccccCceeeecccceeEEEEEEEecc-CCcHHHHHHHHHHHHHhhhccCCce--EEEeeccc----C
Confidence 999999999999988766799999999999999999998 9999999999999999998888877 88876632 2
Q ss_pred cCCceEEEEEEEeccCeEEEEeccCCCCCChhHHHHHHHHHHHHHhccCCcCCccChhHHHHHHHhcCCcceEEeCCCCh
Q psy2632 248 IGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQISL 327 (374)
Q Consensus 248 ~~~G~~i~l~Aet~~g~~~g~~~lg~~g~~~E~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~g~S~i~~g~~t~ 327 (374)
.|||++|+||||++ +++++++++|++|++||+||++||++|++++++++|||+||+||+++|||||+ .+++++.++|.
T Consensus 232 ~spG~gI~L~ae~~-~~~~g~~~lGe~G~~aE~Vg~~aa~~Ll~~l~sgaavD~hlaDqli~~malag-~g~~~v~e~t~ 309 (341)
T COG0430 232 LSPGSGIVLWAESE-GSRIGADALGEKGKSAEVVGEEAAKELLRELESGAAVDEHLADQLIPYMALAG-IGEFTVAEVTS 309 (341)
T ss_pred CCCCceEEEEEeec-CceeehhhcccCCCCHHHHHHHHHHHHHHHhhcCCccchhhhhhhhhHHhhcc-CceEEeeeeeh
Confidence 69999999999999 78999999999999999999999999999999999999999999999999995 88899999999
Q ss_pred hHHHHHHHHHHhcCceEEEEecCCCeEEE
Q psy2632 328 HTRTAIHIAELMTSAKFNIIEHEDKSCII 356 (374)
Q Consensus 328 ht~t~i~v~~~~~gv~f~i~~~~~~~~~i 356 (374)
|.+|++|++|+|++++|+++.++++...+
T Consensus 310 Hl~tni~vie~Fl~~~~~~~~~~g~~~~v 338 (341)
T COG0430 310 HLLTNIWVIERFLGVEFEVEGEEGGPGKV 338 (341)
T ss_pred hhhhhHHHHHHhcCeeEEeecccCCceEE
Confidence 99999999999999999977665545433
No 6
>KOG3980|consensus
Probab=100.00 E-value=6.9e-103 Score=745.73 Aligned_cols=352 Identities=35% Similarity=0.538 Sum_probs=341.0
Q ss_pred EecCCccCCchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCcccC
Q psy2632 12 NIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITS 91 (374)
Q Consensus 12 ~iDGs~~EGGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~~ 91 (374)
++|||+.+||+|+||.+|+||+++|+||+|.+||++|++|||++||+++|+||+++|||++++++++||+++|+||.|.|
T Consensus 2 ~~~~~~~f~g~q~lr~~lvls~Lsg~pvrv~kiR~~~~~PGlr~~~~s~lrLL~~iTnGs~ie~~~~gTtv~f~Pg~i~G 81 (361)
T KOG3980|consen 2 EIDGSYLFGGGQALRLRLVLSTLSGKPVRVEKIRAGRPNPGLKDQHLSFLRLLRDITNGSVIEIEYTGTTVIFTPGLILG 81 (361)
T ss_pred CCCceEEecchHHHHHHHHHHHhcCCceEEEEeccCCCCCCchHHHHHHHHHHHhhcCCcEEEEeecccEEEEcCceeeC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc-ceeEeeeecCCCCC
Q psy2632 92 GNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF-NIDIHDVRRGFFPK 169 (374)
Q Consensus 92 g~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~-~i~i~~~krGf~P~ 169 (374)
|.+++||+|+++|+||+|++||++||++.|++|+|+|+||++++|++||++.+++|+|+|| ++. ++++ .||||||+
T Consensus 82 G~~~~dc~t~~~I~y~leplL~l~pF~k~P~~i~lkGvTN~~~~p~VD~ik~~~lpvlkkFgv~~~elki--~kRG~~P~ 159 (361)
T KOG3980|consen 82 GTVTHDCPTARSIGYFLEPLLPLCPFAKSPLRITLKGVTNSDGDPSVDYIKAVLLPVLKKFGVNDEELKI--QKRGFAPE 159 (361)
T ss_pred CceEEeccCccceeeehhhHHhhhcccCCCeEEEEecccCCCCCcchHHHHHHHHHHHHHhCcCcceEEE--EecccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 754 5999 99999999
Q ss_pred CCcEEEEEEccCCCCcceEEeeCCceeEEEEEEEEeCCCcccHHHHHHHHHHHHHHhhCCCCCcceEEEEeecCCCCCcC
Q psy2632 170 GGGEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIG 249 (374)
Q Consensus 170 GgGeV~~~i~p~~~l~~i~l~~~g~i~~Irg~~~~s~~l~~~ia~r~~~~a~~~L~~~~~~~~~~i~~~~~~~~~~~~~~ 249 (374)
|||||.|+|+|+++|+||.|+++|+|++|||+||+++ ++|++|+||+++|+++|+++++|++ |++|+.+. .++++|
T Consensus 160 GgGeV~f~~~~~k~l~pI~l~~~g~I~kIrG~ays~r-VsP~~A~rm~d~Ak~~l~~~i~dv~--i~~d~~~g-~~sg~s 235 (361)
T KOG3980|consen 160 GGGEVVFTVPVVKKLNPIKLTEPGKIKKIRGVAYSTR-VSPSLANRMVDAAKRVLHKFIPDVY--IYTDVRKG-VDSGFS 235 (361)
T ss_pred CCcEEEEEcCcccccCceeeccCccEEEEEeEEEEcc-cChHHHHHHHHHHHHHHhhhCCceE--EEEeeecc-cccCCC
Confidence 9999999999999999999999999999999999999 7779999999999999999999999 99996655 489999
Q ss_pred CceEEEEEEEeccCeEEEEeccCCCC-CChhHHHHHHHHHHHHHhccCCcCCccChhHHHHHHHhcC-CcceEEeCCCCh
Q psy2632 250 NGSGVYIFAATSTGARYSGGCNGSPR-TSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAK-GTSRVRVGQISL 327 (374)
Q Consensus 250 ~G~~i~l~Aet~~g~~~g~~~lg~~g-~~~E~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~-g~S~i~~g~~t~ 327 (374)
|||||+|+|||++||+|+++++|+++ ..||++|.+||++|+++|+.|||||+|+|||+++||||++ |+|++++|++|.
T Consensus 236 pG~gi~lvAETt~g~~y~Ae~~g~~~~~~pe~lG~eaa~~LL~~i~~gg~vD~~~q~lai~~MaL~~~~vs~~~~G~l~~ 315 (361)
T KOG3980|consen 236 PGFGITLVAETTSGVIYAAEALGKPGPVTPEDLGSEAACQLLEEIYKGGCVDSYLQDLAIVYMALGSEDVSRLLTGPLTN 315 (361)
T ss_pred CCceEEEEEEecCCEEEEhhhcCCCCCCCHHHHHHHHHHHHHHHHHhCCccCchhhHHHHHHHhhhhcCcceEEecCCCh
Confidence 99999999999999999999999995 9999999999999999999999999999999999999996 999999999999
Q ss_pred hHHHHHHHHHHhcCceEEEEecCCC--eEEEEEEeeeccccccc
Q psy2632 328 HTRTAIHIAELMTSAKFNIIEHEDK--SCIIECQGMGFVNKNWG 369 (374)
Q Consensus 328 ht~t~i~v~~~~~gv~f~i~~~~~~--~~~i~c~G~G~~n~~~~ 369 (374)
|++++|+++||||+++|+++..+++ +++++|+|+||+|.|+.
T Consensus 316 ~t~~~L~~lk~~f~~ef~v~~~~~g~~~~lv~c~GiG~tN~nk~ 359 (361)
T KOG3980|consen 316 YTVTALRHLKQFFGIEFKVKMEEEGGGKVLVTCVGIGYTNVNKT 359 (361)
T ss_pred hhHHHHHHHHHHhCEEEEEecCCCCCceEEEEeecccccccccc
Confidence 9999999999999999999998766 79999999999998764
No 7
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=100.00 E-value=9.6e-100 Score=747.32 Aligned_cols=330 Identities=26% Similarity=0.335 Sum_probs=316.1
Q ss_pred ecCCccCCchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCcccCc
Q psy2632 13 IDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSG 92 (374)
Q Consensus 13 iDGs~~EGGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~~g 92 (374)
||||+||||||+||+||+||+||||||+|+|||+||+||||++||+++|+|++++|||+++|++++||+|+|.||.+++|
T Consensus 1 iDGs~~egGgQilR~alaLS~ltgkpvrI~nIR~~r~~PGL~~qhl~~l~ll~~i~~g~~~g~~~gst~l~F~Pg~i~gG 80 (338)
T cd00295 1 LDGAKGEGGCEILRHALSLAMISGQPFRIEGIRADEADPGLKDQHLSALKAAEEICGASVEEAELGGQRFIFRPGNIIGG 80 (338)
T ss_pred CCCccccCchHHHHHHHHHHHhhCCCEEEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECCcccCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cccceeEeeeecCCCCCCC
Q psy2632 93 NFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFPKGG 171 (374)
Q Consensus 93 ~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~~i~i~~~krGf~P~Gg 171 (374)
+|+|||+|||||+||||++||+++|+++|++|+|+||||++||||+||+++||+|+|++| +++++.+ .||||||.||
T Consensus 81 ~~~~d~gtagSi~l~lq~lLp~~~fa~~~~~l~l~GgT~~~~sPsvD~~~~v~lp~l~~~G~~~~~~~--~r~g~~p~gg 158 (338)
T cd00295 81 DVRFACGSAGGCGLFLEPILIACLFADGPSRLELSGGTDNNEAIGADFIRRSLEPLLAKIFIHGDELE--LRHGFRGAAG 158 (338)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHhCCCCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHhCCcccceE--EEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999 9999999999
Q ss_pred cEEEEEEccCCCCcce----EEeeCCceeEEEEEEEEeCCCcccHHHHHHHHHHHHHHhhCCCCCcceEEEEeecCCCCC
Q psy2632 172 GEVNVDVTPVQYIRPI----ELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKA 247 (374)
Q Consensus 172 GeV~~~i~p~~~l~~i----~l~~~g~i~~Irg~~~~s~~l~~~ia~r~~~~a~~~L~~~~~~~~~~i~~~~~~~~~~~~ 247 (374)
|++.+.+.|...++|+ ++.++|++++|||++++++ +|+++++||+++|++.|+...+|++ ++.+..+.. +.+
T Consensus 159 G~~~~~~~p~~~~~~l~~~~~l~~~G~~~~irg~~~~~~-l~~~va~R~~~~a~~~l~~~~~dv~--i~~~~~~~~-~~~ 234 (338)
T cd00295 159 GGGAEENFLCASFKELLLGERGSEFGRQFRGEGIAAGTR-VPPAFAEREIASAAGSFNLFEPDIF--ILPDDQRGD-ECG 234 (338)
T ss_pred CeEEEEEeccCcccccccchhhccCCceEEEEEEEEEcc-CCHHHHHHHHHHHHHHhcccCCceE--EEEeccccc-cCC
Confidence 9999999998777777 5667799999999999887 9999999999999999988888887 777765332 567
Q ss_pred cCCceEEEEEEEeccCeEEEEeccCCCCCChhHHHHHHHHHHHHHhccCCcCCccChhHHHHHHHhcCCcceEEeCCCCh
Q psy2632 248 IGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQISL 327 (374)
Q Consensus 248 ~~~G~~i~l~Aet~~g~~~g~~~lg~~g~~~E~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~g~S~i~~g~~t~ 327 (374)
.+||++++|||||++||++|++++|+++++||+||++||++|++||++|||||+|+|||+++|||||+|.+++++..+|.
T Consensus 235 ~s~G~gi~L~aet~~g~~~~~~~lg~~g~~aE~vg~~aa~~L~~~i~~gg~vD~~lqdqlll~mALa~g~~~~~~~~~t~ 314 (338)
T cd00295 235 NGPGNSISLEAESEKGCSEAAEHCGEAGESAEDVAAFCAKELKEVIASGAAVDEYLADQLLLGMALAGEAGEFIVAGPLC 314 (338)
T ss_pred CCCCeEEEEEEEECCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHhcCCCccEEeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred hHH--HHHHHH-HHhcCceEEEEe
Q psy2632 328 HTR--TAIHIA-ELMTSAKFNIIE 348 (374)
Q Consensus 328 ht~--t~i~v~-~~~~gv~f~i~~ 348 (374)
|+. |++|++ |+|+|++|++++
T Consensus 315 H~~~~t~~~~~~~~f~~~~f~i~~ 338 (338)
T cd00295 315 HLLQLTNFARDVEAFFNCEFRFIE 338 (338)
T ss_pred cchhHHHHHHHHHHhcCcEEEEEC
Confidence 999 999999 999999999974
No 8
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=100.00 E-value=4e-96 Score=722.46 Aligned_cols=322 Identities=24% Similarity=0.362 Sum_probs=311.4
Q ss_pred CchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCcccCccEEEccC
Q psy2632 20 GGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSK 99 (374)
Q Consensus 20 GGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~~g~~~~d~~ 99 (374)
||||+||+||+||+||||||+|+|||++|+||||++||+++|++++++|||+++|++++||+|+|.||.+++|+|++||+
T Consensus 8 gGgQilR~alaLS~ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~g~~~g~~~gst~l~F~PG~i~gG~~~~d~g 87 (341)
T cd00875 8 KGSNFFRQRLVLATLSGKPIIIKKIRSDDTNPGLRDHEVSFLRLLEKVTNGSVIEISYTGTTLIYKPGLITGGVLNHDCP 87 (341)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcEEeeecCceEEEEECCCccCCcEEEeCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-c---ccceeEeeeecCCCCCCCcEEE
Q psy2632 100 TAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-F---NFNIDIHDVRRGFFPKGGGEVN 175 (374)
Q Consensus 100 tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~---~~~i~i~~~krGf~P~GgGeV~ 175 (374)
|||||+||||++||+++|++.|++|+|+||||++||||+||+++||+|+|++| + .+++++ .||||||+|||||.
T Consensus 88 tagSI~l~Lq~lLp~~~f~~~p~~l~l~GgT~~~~spsvD~~~~v~lP~l~~fG~~~~~~~l~v--~rrG~yP~GgG~V~ 165 (341)
T cd00875 88 VSRGIGYFLEPLLLLAPFGKKPLSITLKGITNSTGDPSVDSIRTATLPLLKKFGIPDEELELKI--LKRGVAPGGGGEVG 165 (341)
T ss_pred CCcchHHHHHHHHHHHhhCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCccceEEEE--EeccCCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999 7 489999 99999999999999
Q ss_pred EEEccCCCCcceEEeeCCceeEEEEEEEEeCCCcccHHHHHHHHHHHHHHhhCCCCCcceEEEEeecCCCCCcCCceEEE
Q psy2632 176 VDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIGNGSGVY 255 (374)
Q Consensus 176 ~~i~p~~~l~~i~l~~~g~i~~Irg~~~~s~~l~~~ia~r~~~~a~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~G~~i~ 255 (374)
++++|+++++|++++++|++++|||++++++ +|+++++||+++|++.|++.+++++ ++++..+. .+++.+||++++
T Consensus 166 ~~~~~~~~l~~i~l~~~G~i~~irG~~~~~~-l~~~va~r~~~~a~~~L~~~~~dv~--i~~~~~~~-~~~~~~~G~gi~ 241 (341)
T cd00875 166 FRCPVRKPLTPHLNDSPGRIKRIRGVAYSTR-VSPSIANRMIDAARGVLNPFIPDVY--IYTDVRKG-DNSGKSPGFGIS 241 (341)
T ss_pred EEecCcccccceeeccCCceEEEEEEEEEcc-CCHHHHHHHHHHHHHHHHhhCCCce--EEEEeccc-ccCCCCCCeEEE
Confidence 9999988999999999999999999999997 9999999999999999999999999 99885433 367789999999
Q ss_pred EEEEeccCeEEEEeccCCCCCC---hhHHHHHHHHHHHHHhccCCcCCccChhHHHHHHHhcC-CcceEEeC-CCChhH-
Q psy2632 256 IFAATSTGARYSGGCNGSPRTS---PGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAK-GTSRVRVG-QISLHT- 329 (374)
Q Consensus 256 l~Aet~~g~~~g~~~lg~~g~~---~E~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~-g~S~i~~g-~~t~ht- 329 (374)
|||||++||+++++++|++|.+ ||+||++||++|++||++|||||+|+||||++|||||+ ++|++++| +++.++
T Consensus 242 L~aet~~g~~~~~~~~g~~g~~~~~aE~vg~~aa~~Ll~ei~~gg~vD~~lqdqll~~mALa~~~vs~~~~g~~~~~~~~ 321 (341)
T cd00875 242 LVAETTTGVLYSAENVSPAGGESEVPEDLGRECAYQLLEEISRGGCVDSYQQPLALLLMALGSEDVGRLRLGGPLIDEEF 321 (341)
T ss_pred EEEEECCCEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHHHHcCCccChhHHHHHHHHHHhCCCCceeEEeccccCcchh
Confidence 9999999999999999999986 99999999999999999999999999999999999997 89999997 899999
Q ss_pred -HHHHHHHHHhcCceEEEE
Q psy2632 330 -RTAIHIAELMTSAKFNII 347 (374)
Q Consensus 330 -~t~i~v~~~~~gv~f~i~ 347 (374)
+..++.+++|||++|+++
T Consensus 322 ~i~~lr~lk~f~~~~f~~~ 340 (341)
T cd00875 322 KIHLLRDLKEFFGIMFKID 340 (341)
T ss_pred HHHHHHHHHHhhCeEEecc
Confidence 999999999999999986
No 9
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. ; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=100.00 E-value=5e-81 Score=583.83 Aligned_cols=226 Identities=48% Similarity=0.847 Sum_probs=201.9
Q ss_pred ecCCccCCchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCcccCc
Q psy2632 13 IDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSG 92 (374)
Q Consensus 13 iDGs~~EGGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~~g 92 (374)
||||++|||||+||+|++||+|+||||+|+|||++|+||||++||+++|++++++|||+++|++++||+|+|.||.+++|
T Consensus 1 iDGs~~egGgq~lR~~laLS~l~gkpi~I~~IR~~r~~PGL~~qh~~~l~ll~~it~g~~~g~~~~st~l~f~Pg~i~~g 80 (228)
T PF01137_consen 1 IDGSYGEGGGQILRTALALSALTGKPIRIENIRANRPNPGLRPQHLSALRLLAKITNGSVIGISLGSTELTFRPGEIRGG 80 (228)
T ss_dssp EETTCCCCSTCCHHHHHHHHHHHT--EEEESTTTTSSS-S--HHHHHHHHHHHHHCCSEEEEESTTSSEEEEE--EE-EC
T ss_pred CCCccccCchHHHHHHHHHHhccCCCEEEEEEecCCCCCcccHHHHHHHHHHHHhcCCeecceecCCcEEEEECCCccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cccceeEeeeecCCCCCCC
Q psy2632 93 NFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFPKGG 171 (374)
Q Consensus 93 ~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~~i~i~~~krGf~P~Gg 171 (374)
+|++||+|||||+||||++||+++|++.|++|+|+||||++||||+||+++||+|+|++| ++.++++ .||||||+||
T Consensus 81 ~~~~d~~tagsi~l~lq~llp~~~f~~~~~~l~l~GgT~~~~~psvd~~~~v~lP~l~~~G~~~~l~i--~krG~~P~Gg 158 (228)
T PF01137_consen 81 DYTFDCGTAGSISLVLQALLPLLLFAKGPSRLTLTGGTNVPFSPSVDYIRQVFLPLLRKFGIPVELKI--IKRGFYPKGG 158 (228)
T ss_dssp EEEEEEETTCBHHHHHHHHCCCHCCSSSEEEEEEEEBSBBTTS--HHHHHHTCHHHHHHCT-ECEEEE--EE--BTTTB-
T ss_pred cEEEecCCCceeeeeHHHHHHHHHhcCCCEEEEEEEecCCCCCCCHHHHHHHHHHHHHHcCCCcEEEE--EEeccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999 9999999999
Q ss_pred cEEEEEEccCCCCcceEEeeCCceeEEEEEEEEeCCCcccHHHHHHHHHHHHHHhhCCCCCcceEEEEeecCCCCCcCCc
Q psy2632 172 GEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIGNG 251 (374)
Q Consensus 172 GeV~~~i~p~~~l~~i~l~~~g~i~~Irg~~~~s~~l~~~ia~r~~~~a~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~G 251 (374)
|||.++|+|++.++|++
T Consensus 159 GeV~~~v~p~~~l~~i~--------------------------------------------------------------- 175 (228)
T PF01137_consen 159 GEVQLRVPPVKPLKPID--------------------------------------------------------------- 175 (228)
T ss_dssp EEEEEEEE-SSS---EE---------------------------------------------------------------
T ss_pred eEEEEEEEccccccccc---------------------------------------------------------------
Confidence 99999999999999888
Q ss_pred eEEEEEEEeccCeEEEEeccCCCCCChhHHHHHHHHHHHHHhccCCcCCccChhHHHHHHHhcCC-cceEEeCCCChhHH
Q psy2632 252 SGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKG-TSRVRVGQISLHTR 330 (374)
Q Consensus 252 ~~i~l~Aet~~g~~~g~~~lg~~g~~~E~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~g-~S~i~~g~~t~ht~ 330 (374)
||||+|||||+++|||||+| +|++++|++|+|++
T Consensus 176 ---------------------------------------------g~vD~~~qdqll~~mALa~g~vS~i~~g~lt~h~~ 210 (228)
T PF01137_consen 176 ---------------------------------------------GCVDEHLQDQLLLFMALAKGDVSRIRVGPLTLHTV 210 (228)
T ss_dssp ---------------------------------------------CSS-HHHHHHHHHHHHCCTSSEEEEEESCSSHHHH
T ss_pred ---------------------------------------------hhhhhhhHHHHHHHHHhCCCCceEEEecCCCHHHH
Confidence 99999999999999999987 79999999999999
Q ss_pred HHHHHHHHhcCceEEEEe
Q psy2632 331 TAIHIAELMTSAKFNIIE 348 (374)
Q Consensus 331 t~i~v~~~~~gv~f~i~~ 348 (374)
|++|++|+|+|++|++++
T Consensus 211 t~l~vi~~fl~v~f~v~~ 228 (228)
T PF01137_consen 211 TNLRVIEQFLGVKFKVEE 228 (228)
T ss_dssp HHHHHHHHHCS-EEEE--
T ss_pred HHHHHHHHHcCcEEEEeC
Confidence 999999999999999974
No 10
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while RTPC has 3 similar repeats with a 4th slightly different domain inserted between the 2nd and 3rd repeat. They evidently share the same active site location, although the catalytic residues differ.
Probab=100.00 E-value=2.9e-35 Score=272.95 Aligned_cols=174 Identities=39% Similarity=0.683 Sum_probs=167.4
Q ss_pred ecCCccCCchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCcccCc
Q psy2632 13 IDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSG 92 (374)
Q Consensus 13 iDGs~~EGGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~~g 92 (374)
||||++|||+|.+|+.++||+|+|+||+|.|||.++.+|||+.||.+++++++++|++++++.+.+++.++|.|+.++++
T Consensus 1 ~~~~~~~~d~s~a~~~lala~l~g~~i~I~~i~~~~~~pgl~q~~~~~l~~L~~~~G~~i~~~~~~~~~i~~~p~~l~g~ 80 (211)
T cd01553 1 LDGAGGKGGGQILRSFLVLAAISGGPITVTGIRPDRAKPGLLRQHLTFLKALEKICGATVEGGELGSDRISFRPGTVRGG 80 (211)
T ss_pred CCCcccCCChHHHHHHHHHHHHcCCCEEEEEeccCCCCccccHHHHHHHHHHHHHcCCeEEeeecCCceEEEeCCCccce
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cccceeEeeeecCCCCCCC
Q psy2632 93 NFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFPKGG 171 (374)
Q Consensus 93 ~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~~i~i~~~krGf~P~Gg 171 (374)
++.+++.++||+++++|+++++++|++++++|+..|+|++++||+.|+.+.+++|.|++| ++++.+. .||||||.|+
T Consensus 81 ~i~~~~~s~g~~~d~~~~l~~la~~a~g~s~i~~~g~tr~~~~~~e~~r~~~~~~~L~k~G~~~~~~~--~~~~~~~~g~ 158 (211)
T cd01553 81 DVRFAIGSAGSCTDVLQTILPLLLFAKGPTRLTVTGGTDNPSAPPADFIRFVLEPELAKIGAHQEETL--LRHGFYPAGG 158 (211)
T ss_pred EEEeccCCcccHHHHHHHHHHHHHhCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHcCCcceeee--eeeeeccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9988888 9999999999
Q ss_pred cEEEEEEccCCCCcceE
Q psy2632 172 GEVNVDVTPVQYIRPIE 188 (374)
Q Consensus 172 GeV~~~i~p~~~l~~i~ 188 (374)
|++.+.+.|...+++.+
T Consensus 159 g~~~~~i~g~~~l~~~~ 175 (211)
T cd01553 159 GVVATEVSPVEKLNTAQ 175 (211)
T ss_pred CccEEEEcCCccccccc
Confidence 99999999865555544
No 11
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=99.89 E-value=5.8e-23 Score=170.09 Aligned_cols=103 Identities=31% Similarity=0.411 Sum_probs=88.3
Q ss_pred eeCCceeEEEEEEEEeCCCcccHHHHHHHHHHHHHHhhCCCCCcceEEEEeecCCCCCcCCceEEEEEEEeccCeEEEEe
Q psy2632 190 TQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIGNGSGVYIFAATSTGARYSGG 269 (374)
Q Consensus 190 ~~~g~i~~Irg~~~~s~~l~~~ia~r~~~~a~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~G~~i~l~Aet~~g~~~g~~ 269 (374)
+|||++++|+|++++++ +|+++++||++.|++.|+...++++ |+.|..+. .+.+.+||++|+|||||++||++|++
T Consensus 1 terG~~~~i~g~a~~a~-lp~~va~R~~~~a~~~L~~~~~~v~--i~~d~~~~-~~~~~~~G~gi~l~ae~~~g~~~g~~ 76 (103)
T PF05189_consen 1 TERGRLKRIRGIAFVAG-LPSSVAERMANAARKRLNWYGPDVE--IETDYRES-DDSAFGPGSGISLVAETENGCVLGFS 76 (103)
T ss_dssp -C--SECEEEEEEEEES-S-CHHHHHHHHHHHHHHCTTCSEEE--EEEEEE-C-CCCGCSSEEEEEEEEEETTS-EEEEE
T ss_pred CCCCceEEEEEEEEEcC-CCHHHHHHHHHHHHHHhhhhCCCeE--EEEecccC-ccCCCCCceEEEEEEEECCCEEEEEE
Confidence 58999999999999998 9999999999999999999998888 88876433 47788999999999999999999999
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHhccC
Q psy2632 270 CNGSPRTSPGECGLNAAKELWSSLCEN 296 (374)
Q Consensus 270 ~lg~~g~~~E~vg~~aa~~Ll~~i~~g 296 (374)
++|+++++||+||++||++|+++|++|
T Consensus 77 alG~~g~~aE~Vg~~Aa~~L~~~i~~G 103 (103)
T PF05189_consen 77 ALGERGVPAEKVGEEAAEELLEYIRSG 103 (103)
T ss_dssp EEE-TTS-HHHHHHHHHHHHHHHHCT-
T ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999876
No 12
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=78.01 E-value=30 Score=34.83 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=66.4
Q ss_pred chhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeec-CceEEEEeCCcccCccEEEccC
Q psy2632 21 GGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHI-GSTEIIFYPGNITSGNFYADSK 99 (374)
Q Consensus 21 GGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~-~st~l~F~PG~i~~g~~~~d~~ 99 (374)
-|..+|.-++++++.+.+++|.+--.=+.+| -. ..++++.++ +++++..+. +...+.-.++ ..++++.+++.
T Consensus 77 sgt~~r~l~~l~a~~~~~~~i~g~~~l~~rp--~~---~l~~~L~~l-Ga~v~~~~~~~~~p~~i~~~-~~~~~~~i~~~ 149 (409)
T TIGR01356 77 SGTTARLLTGVLALADGEVVLTGDESLRKRP--MG---RLVDALRQL-GAEISSLEGGGSLPLTISGP-LPGGIVYISGS 149 (409)
T ss_pred chHHHHHHHHHHHcCCCeEEEECCcccccCC--cH---HHHHHHHHC-CCEEEEcCCCCcCCEEEecC-CCCCeEEeCCC
Confidence 3689999999999999999998621111122 12 235555554 455543221 1113555554 55677777765
Q ss_pred CCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 100 TAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 100 tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
. | +=++-++|..++ ...+..+++.|+.... .| |++ .++..|++| +.+
T Consensus 150 ~--S-~q~~salllaa~-~~~~~~~~~~~~~~~~-~~---~i~-~~l~~L~~~G~~i 197 (409)
T TIGR01356 150 A--S-SQYKSALLLAAP-ALQAVGITIVGEPLKS-RP---YIE-ITLDLLGSFGVEV 197 (409)
T ss_pred c--c-hHHHHHHHHhcc-ccCCCeeEEecCCCCC-cC---HHH-HHHHHHHHCCcEE
Confidence 3 2 223334444444 3556778887754332 23 444 456778888 643
No 13
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=76.00 E-value=62 Score=32.27 Aligned_cols=131 Identities=13% Similarity=0.094 Sum_probs=73.8
Q ss_pred ceEEecCCccCCc-----------hhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeec
Q psy2632 9 DVLNIDGSVLEGG-----------GQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHI 77 (374)
Q Consensus 9 ~~i~iDGs~~EGG-----------GQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~ 77 (374)
..++|+|.-+.++ |-.+|.-+++.++...++.|.|-..=+. ++. ...+++|.++ +++++....
T Consensus 58 ~~~~i~g~~~~~~~~~~~i~~~~s~~s~~~l~~l~~~~~~~~~i~g~~~l~~----~~~-~~~~~~L~~l-Ga~i~~~~~ 131 (409)
T cd01556 58 GTVEIVGGGGLGLPPEAVLDCGNSGTTMRLLTGLLALQGGDSVLTGDESLRK----RPM-GRLVDALRQL-GAEIEGREG 131 (409)
T ss_pred CEEEEEcCCCCCCCCCceEEcCCchHHHHHHHHHHHcCCCeEEEECCccccc----CCh-HHHHHHHHHC-CCEEEeCCC
Confidence 4577887533222 2678988999988888999986310012 222 3556666665 455553321
Q ss_pred CceEEEEeCCcccCccEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 78 GSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 78 ~st~l~F~PG~i~~g~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
......-.++.+++++++++++. -+-++-++|.++++++++++| ++. +....| |+. .++..|++| +++
T Consensus 132 ~~~~~i~~~~~~~~~~~~i~~~~---ss~~~~~ll~aa~l~~g~~~i--~~~-~~~~~~---~i~-~~~~~L~~lGa~i 200 (409)
T cd01556 132 GGYPPLIGGGGLKGGEVEIPGAV---SSQFKSALLLAAPLAEGPTTI--IIG-ELESKP---YID-HTERMLRAFGAEV 200 (409)
T ss_pred CCCCCeeecCCCCCcEEEeCCCC---ccHHHHHHHHHHhcCCCceEE--Eee-CCCCcC---HHH-HHHHHHHHcCCcE
Confidence 11110134677788888888762 112244556666777776555 444 322233 333 467788888 643
No 14
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=72.90 E-value=25 Score=35.50 Aligned_cols=109 Identities=11% Similarity=0.156 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCC-cEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCcccCccEEEccCCCCc
Q psy2632 25 LRMAMVFSGLLHR-PIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGS 103 (374)
Q Consensus 25 lR~alaLS~it~k-pi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~~g~~~~d~~tagS 103 (374)
+|...++++..+. ++.+..--.-+++| . ...++.++++ +++++.. +..+...++.++++++.+|+++++
T Consensus 95 ~~~~~~~~~~~~~~~v~~~g~~~l~~Rp-~----~~~~~~L~~l-Ga~v~~~---~~~i~v~~~~l~~~~~~ld~~ss~- 164 (417)
T PRK12830 95 YYFMGALLGRFKKAVVGLPGGCDLGPRP-I----DQHIKGFEAL-GAEVTNE---GGAIYLKADELKGAHIYLDVVSVG- 164 (417)
T ss_pred HHHHHHHhcCCCceEEEecCCCccCCCc-C----HHHHHHHHHC-CCEEEEc---CCEEEEEeCCccCCEEECCCCCHH-
Confidence 3455555555445 78776322223333 2 2445666665 4455322 234666666688889999986543
Q ss_pred hHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 104 VTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 104 i~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
...- +|..++++++++.+ ++ ....|.++.+ +..|++| +++
T Consensus 165 --~~~~-ll~a~~~~~g~~~i--~~---~~~~~~i~~l----~~~L~~~G~~i 205 (417)
T PRK12830 165 --ATIN-IMLAAVKAKGRTVI--EN---AAKEPEIIDV----ATLLNNMGANI 205 (417)
T ss_pred --HHHH-HHHHHHcCCCeEEE--cc---CCcCCcHHHH----HHHHHHCCCEE
Confidence 2222 45556677777755 33 3345555543 4578888 654
No 15
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=72.70 E-value=49 Score=36.26 Aligned_cols=114 Identities=11% Similarity=0.122 Sum_probs=67.3
Q ss_pred CchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCc-eEEEEeCC-cccCccEEEc
Q psy2632 20 GGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGS-TEIIFYPG-NITSGNFYAD 97 (374)
Q Consensus 20 GGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~s-t~l~F~PG-~i~~g~~~~d 97 (374)
..|-.+|...++.+....++.+..--.-+..| ...|+ +.|.++ +++++ .+..+ .-++-..+ .++|+++.++
T Consensus 393 ~s~ts~~ll~a~la~~~~~v~i~G~~~l~~rp--~~~l~---~~L~~~-Ga~i~-~~~~g~~pi~i~g~~~l~g~~~~l~ 465 (735)
T PRK14806 393 NSGTSMRLLSGLLAAQSFDSVLTGDASLSKRP--MERVA---KPLREM-GAVIE-TGEEGRPPLSIRGGQRLKGIHYDLP 465 (735)
T ss_pred CchHHHHHHHHHHhcCCCeEEEECChhhhhCC--hHHHH---HHHHHC-CCEEE-cCCCCcCCEEEECCCCccceEEecc
Confidence 46888999999887666677776543333334 23444 444444 34554 22122 12444544 4788877666
Q ss_pred cCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 98 SKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 98 ~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
. .-..+..++|.++++++++++|+ +. .+..++ +...|++| +.+
T Consensus 466 ~----~ssq~~s~ll~aA~~~~g~~~i~-----~~--~~~~~~----t~~~L~~~G~~i 509 (735)
T PRK14806 466 M----ASAQVKSCLLLAGLYAEGETSVT-----EP--APTRDH----TERMLRGFGYPV 509 (735)
T ss_pred C----chHHHHHHHHHHHhccCCceEEe-----cC--cCCHHH----HHHHHHHCCCEE
Confidence 4 23344456778889999988863 33 344455 45778888 654
No 16
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=72.42 E-value=58 Score=35.53 Aligned_cols=114 Identities=11% Similarity=0.100 Sum_probs=66.4
Q ss_pred chhHHHHH-HHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeC-C-cccCccEEEc
Q psy2632 21 GGQILRMA-MVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYP-G-NITSGNFYAD 97 (374)
Q Consensus 21 GGQilR~a-laLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~P-G-~i~~g~~~~d 97 (374)
|+-.+-.+ |.||+++..+.+|.|.=- ...=...++++.++ ++++.. + +.+++-.+ | .+..+...++
T Consensus 23 gsKs~s~R~l~lAaLa~g~s~i~~~l~-------s~D~~~~l~aL~~L-Ga~i~~-~--~~~i~I~g~g~~l~~~~~~i~ 91 (661)
T PRK11860 23 GSKSISNRVLLLAALSEGTTTVRDLLD-------SDDTRVMLDALRAL-GCGVEQ-L--GDTYRITGLGGQFPVKQADLF 91 (661)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEccCCc-------cHHHHHHHHHHHHc-CCEEEe-c--CCEEEEECCCCCcCCCCceEE
Confidence 33444444 789999999999987321 12223555666665 344431 1 23344454 3 2445677789
Q ss_pred cCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 98 SKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 98 ~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
++.+|+.. -+++++++..+++ .+|+|...- .+++++-+ +-.|++| +.+
T Consensus 92 ~g~sGtt~---r~Ll~~~al~~g~--~~i~g~~~L-~~RP~~~L----l~~L~~lGa~v 140 (661)
T PRK11860 92 LGNAGTAM---RPLTAALALLGGE--YELSGVPRM-HERPIGDL----VDALRQLGCDI 140 (661)
T ss_pred eCCchHHH---HHHHHHHHcCCCe--EEEECCchh-hcCChHHH----HHHHHHCCCEE
Confidence 99888764 4556777776654 566765544 35565544 3355666 543
No 17
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=71.61 E-value=49 Score=36.14 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=58.7
Q ss_pred chhHHHHH-HHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeC--CcccCccEEEc
Q psy2632 21 GGQILRMA-MVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYP--GNITSGNFYAD 97 (374)
Q Consensus 21 GGQilR~a-laLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~P--G~i~~g~~~~d 97 (374)
|-...=++ |++|+++..+.+|.|.= + ..-=...+++++++ +++++. + + .+++-.+ |.+.++...+|
T Consensus 259 gsKS~s~R~l~~AaLa~g~s~i~~~l--~-----s~D~~~~~~aL~~l-Ga~i~~-~-~-~~~~I~g~~~~~~~~~~~i~ 327 (673)
T PRK11861 259 GSKSISNRVLLLAALAEGETTVTNLL--D-----SDDTRVMLDALTKL-GVKLSR-D-G-GTCVVGGTRGAFTAKTADLF 327 (673)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEcCCC--C-----CHHHHHHHHHHHHc-CCeEEe-c-C-CEEEEEcCCCCcCCCCceEe
Confidence 44444454 88999999999998731 1 12233677777777 455542 1 2 2344443 34566778899
Q ss_pred cCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCC
Q psy2632 98 SKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNAD 133 (374)
Q Consensus 98 ~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~ 133 (374)
|+.+|+...+ +++++++.+++. +|+|+..-.
T Consensus 328 ~g~sGt~~r~---L~~~~a~~~g~~--~i~G~~~L~ 358 (673)
T PRK11861 328 LGNAGTAVRP---LTAALAVNGGEY--RIHGVPRMH 358 (673)
T ss_pred cCCcchHHHH---HHHHHHcCCCeE--EEECChhhc
Confidence 9988766544 466666655544 555666543
No 18
>cd01556 EPSP_synthase EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Probab=65.97 E-value=35 Score=34.07 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=62.3
Q ss_pred HHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCcccCc--cEEEccCCCCchH
Q psy2632 28 AMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSG--NFYADSKTAGSVT 105 (374)
Q Consensus 28 alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~~g--~~~~d~~tagSi~ 105 (374)
+++++++++.|++|.|.=. -++ =...+++++++ ++++... +..++..|....+. +..++++..|...
T Consensus 17 ~l~~a~l~~g~~~i~~~~~------~~d-v~~~~~~L~~l-G~~i~~~---~~~~~i~g~~~~~~~~~~~i~~~~s~~s~ 85 (409)
T cd01556 17 ALLLAALAEGESRIENLLD------SDD-TLATLEALRAL-GAKIEEE---GGTVEIVGGGGLGLPPEAVLDCGNSGTTM 85 (409)
T ss_pred HHHHHHhcCCCEEECCCCC------CHH-HHHHHHHHHHc-CCeEEec---CCEEEEEcCCCCCCCCCceEEcCCchHHH
Confidence 5888889999999987321 122 23455555554 5555532 25577777654443 5577887766544
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 106 LIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 106 l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
. .++++++.+ +.+++++|+-+. .+++++. ++-.|++| +++
T Consensus 86 ~---~l~~l~~~~--~~~~~i~g~~~l-~~~~~~~----~~~~L~~lGa~i 126 (409)
T cd01556 86 R---LLTGLLALQ--GGDSVLTGDESL-RKRPMGR----LVDALRQLGAEI 126 (409)
T ss_pred H---HHHHHHHcC--CCeEEEECCccc-ccCChHH----HHHHHHHCCCEE
Confidence 4 445655555 457888887433 2344333 34456667 544
No 19
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=65.76 E-value=86 Score=31.75 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCcccCccEEEccCCC
Q psy2632 22 GQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTA 101 (374)
Q Consensus 22 GQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~~g~~~~d~~ta 101 (374)
|..+|.-++++++.+.++.|.|--.=+.+| . ...+++|.++ +++++--..+...++-.. ...++.++++++..
T Consensus 93 g~~~r~l~~laa~~~~~~~i~g~~~l~~r~-~----~~l~~~L~~l-Ga~i~~~~~~~~~i~i~g-~~~~~~~~i~~~~s 165 (435)
T PRK02427 93 GTTMRLLTGLLALQPGEVVLTGDESLRKRP-M----GRLLDPLRQM-GAKIEGRDEGYLPLTIRG-GKKGGPIEYDGPVS 165 (435)
T ss_pred hHHHHHHHHHHHhCCCeEEEECChhhccCC-h----HHHHHHHHHC-CCEEEeCCCCCCCEEEec-CCcCccEEecCCcC
Confidence 588999999999999999998632111122 1 3455555554 344432011111233332 22456677777543
Q ss_pred CchHHHHHHHHHHHhcCC-CceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 102 GSVTLIMQVALPLLLFSS-GQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 102 gSi~l~lq~lLp~llf~~-~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
+-++.++|.++++.. +++++++.+ +....|-++ .++..|++| +.+
T Consensus 166 ---s~~~~~lll~aa~~~~g~~~i~~~~--~~~~rp~i~----~~~~~L~~lG~~i 212 (435)
T PRK02427 166 ---SQFVKSLLLLAPLFAEGDTETTVIE--PLPSRPHTE----ITLRMLRAFGVEV 212 (435)
T ss_pred ---CHHHHHHHHHHhhccCCCcEEEEcC--CCCCCCHHH----HHHHHHHHCCCeE
Confidence 344556666665544 777777755 333344333 345667777 643
No 20
>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=61.92 E-value=61 Score=32.85 Aligned_cols=115 Identities=15% Similarity=0.227 Sum_probs=64.4
Q ss_pred eEEecCCccCCchhHHHH-HHHHHHhcCCcEEEEEEecCCCCCCchH--HHHHHHHHHHHhcCceEeeeecCceEEEEeC
Q psy2632 10 VLNIDGSVLEGGGQILRM-AMVFSGLLHRPIHVFNIRAGRVKPGLAA--QHLNGLIVAKDICQGRLENAHIGSTEIIFYP 86 (374)
Q Consensus 10 ~i~iDGs~~EGGGQilR~-alaLS~it~kpi~I~nIRa~r~~PGL~~--qhl~~l~ll~~l~~g~~~g~~~~st~l~F~P 86 (374)
-|.+.|| ....+ +|++++++..+.+|.|. ++-++ .|+.+|+ ++ ++++.. ..+.-.+
T Consensus 16 ~i~~p~s------ks~~~r~l~~a~La~g~s~i~~~------~~~~dv~~~~~~L~---~l-G~~i~~-----~~~~i~~ 74 (435)
T PRK02427 16 TVRVPGS------KSISHRALLLAALAEGETTITNL------LRSEDTLATLNALR---AL-GVEIED-----DEVVVEG 74 (435)
T ss_pred EEEcCCC------hHHHHHHHHHHHhcCCCEEEcCC------CccHHHHHHHHHHH---Hc-CCeEEc-----ceEEEEc
Confidence 3677777 44433 39999999999999765 44454 4554444 44 445432 2333332
Q ss_pred CcccC---ccEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 87 GNITS---GNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 87 G~i~~---g~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
....+ -...+|++.+|+..++ +++++..+++ +++++|+-.-. .++++. ++-.|++| +++
T Consensus 75 ~~~~~~~~~~~~i~~~~sg~~~r~---l~~laa~~~~--~~~i~g~~~l~-~r~~~~----l~~~L~~lGa~i 137 (435)
T PRK02427 75 VGGGGLKEPEDVLDCGNSGTTMRL---LTGLLALQPG--EVVLTGDESLR-KRPMGR----LLDPLRQMGAKI 137 (435)
T ss_pred cCCCCCCCCCCEEEccCchHHHHH---HHHHHHhCCC--eEEEECChhhc-cCChHH----HHHHHHHCCCEE
Confidence 11211 1234789888866664 4676777766 67777754332 233332 33355566 543
No 21
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=61.78 E-value=76 Score=32.28 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=66.9
Q ss_pred CchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeec-CceEEEEeCCcccCccEEEcc
Q psy2632 20 GGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHI-GSTEIIFYPGNITSGNFYADS 98 (374)
Q Consensus 20 GGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~-~st~l~F~PG~i~~g~~~~d~ 98 (374)
..|-.+|.-+++.+....++.+.-=-.=+.+| ...|+..|+.+ ++++...+. +.-.+...+ ..++.++++.
T Consensus 90 ~Sgt~lr~L~~~~~~~~~~~~~~G~~~l~~RP--~~~l~~~L~~l----Ga~i~~~~~~~~~pi~i~~--~~~~~~~i~~ 161 (419)
T PF00275_consen 90 NSGTTLRFLLALLALAPGPVTFTGDCSLGKRP--MDPLLDALRQL----GARISYLNGEGFLPIRIRG--LKGGPIEIDG 161 (419)
T ss_dssp CGHHHHHHHHHHHSEESSEEEEECSBTGGGST--CHHHHHHHHHT----TEEEEEETTEEEEEECEEE--SSSBEEEEET
T ss_pred cChhHHhHHHHHHheeeEEEEEeccchhhhCC--HHHHHHHHhhC----CCEEEEecCCceEEEEEee--cccCcEEEec
Confidence 45788999999999988888887421112233 34455555443 344443221 111333344 6778888876
Q ss_pred CCCCchHHHHHHHHHHHh-cCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cccc
Q psy2632 99 KTAGSVTLIMQVALPLLL-FSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNFN 156 (374)
Q Consensus 99 ~tagSi~l~lq~lLp~ll-f~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~~ 156 (374)
.- | +-++=++|.+++ ++.+ ++++++ . .+-.|+. .++.+|++| +.++
T Consensus 162 ~~--s-Sq~vs~lll~A~~~a~g--~i~i~~-~-----~s~p~i~-~t~~~L~~~G~~i~ 209 (419)
T PF00275_consen 162 DI--S-SQFVSALLLAAALLARG--EITIIN-P-----ASEPYID-MTIDMLKKFGAKIE 209 (419)
T ss_dssp SS--S-HHHHHHHHHHHHTTSBS--EEEEES-E-----SSSHHHH-HHHHHHHHTT-EEE
T ss_pred cC--C-CHHHHHHHHHHHHhcCC--ceEEeC-C-----CCCCcHH-HHHHHHhhceEEEE
Confidence 42 2 334445555566 4455 888888 2 2223554 578888888 6543
No 22
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=61.38 E-value=2.1e+02 Score=29.77 Aligned_cols=141 Identities=15% Similarity=0.179 Sum_probs=81.0
Q ss_pred chhHHHHHHHHHHhcC-CcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCc----ccCccEE
Q psy2632 21 GGQILRMAMVFSGLLH-RPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGN----ITSGNFY 95 (374)
Q Consensus 21 GGQilR~alaLS~it~-kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~----i~~g~~~ 95 (374)
-|.-+|..++++++.. .++.++-==.=|++| .. -.++.|+++ ++++.+.+.++ |-|=. +.++.++
T Consensus 93 SGTt~R~l~glla~~~~~~~~l~Gd~sl~~RP-m~----~l~~aLr~~-Ga~i~~~~~~~----~~Pl~i~G~~~~~~i~ 162 (428)
T COG0128 93 SGTTLRLLTGLLALGSPGETVLTGDESLRKRP-MG----PLVDALRQL-GAKIDGREGEG----YLPLTIKGGLKGGEVE 162 (428)
T ss_pred chhHHHHHHHHHhcCCCCeEEEECChhhhhCC-cH----HHHHHHHHC-CcEEEecCCCC----cCCEEEECCCCCceEE
Confidence 4789999999999855 888887322223444 11 456666665 44555443222 33433 4556666
Q ss_pred EccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cccceeEeeeecCCCCCCCcEE
Q psy2632 96 ADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFPKGGGEV 174 (374)
Q Consensus 96 ~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~~i~i~~~krGf~P~GgGeV 174 (374)
++..- -+=++=++|.++++.. +..+++.||--.+ .|.+| +++-+|+.| ++++.+= .
T Consensus 163 i~~~~---SSq~vsslL~~a~l~~-~~~~~~~~~~~~s-~~yid----~T~~mL~~FGv~v~~~~-------------~- 219 (428)
T COG0128 163 IDGPV---SSQQVSSLLLLAPLLA-EGTTIIVGGVLES-KPYID----HTLDMLKAFGVEVENEG-------------Y- 219 (428)
T ss_pred Eeccc---hHHHHHHHHHHHhhcC-CCcEEEecCccCC-ccHHH----HHHHHHHHcCCeEEeec-------------c-
Confidence 66642 3456677888888877 4555555544333 34333 567778887 6543321 1
Q ss_pred EEEEccCCCCcceEEeeCCc
Q psy2632 175 NVDVTPVQYIRPIELTQRGE 194 (374)
Q Consensus 175 ~~~i~p~~~l~~i~l~~~g~ 194 (374)
++.++|-.++.|-++.-+|.
T Consensus 220 ~~~i~~g~~~~~~~~~VpgD 239 (428)
T COG0128 220 RFYIPGGQKLTPGDYDVPGD 239 (428)
T ss_pred EEEECCCccccCceEEcCCC
Confidence 45565544455655555444
No 23
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=57.95 E-value=42 Score=33.61 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCceEeeeecCceEEEEeCCcccCccEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCH
Q psy2632 59 NGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPI 138 (374)
Q Consensus 59 ~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~~g~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~Psi 138 (374)
..++.++++ +++++. .-+.-.+. .+|.++++++.+++++.+..+.+ |..++++++++++ .+. ...|.
T Consensus 115 ~~~~~L~~l-G~~i~~-~~~~~~v~-~~~~~~~~~~~i~~~~~~~~~~l----l~aa~~~~g~~~i--~~~---~~~~~- 181 (400)
T cd01555 115 LHLKGLEAL-GAKIEI-EDGYVEAK-AAGRLKGARIYLDFPSVGATENI----MMAAVLAEGTTVI--ENA---AREPE- 181 (400)
T ss_pred HHHHHHHHC-CCEEEE-eCCEEEEe-cCCCccceEEECCCCCHHHHHHH----HHHHHhCCCeEEE--ecc---cCCcc-
Confidence 456677666 344432 11222222 46778888998887655433332 3334667777665 343 22333
Q ss_pred HHHHHHHHHHhccc-ccc
Q psy2632 139 DYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 139 Dyi~~v~~P~l~~f-~~~ 155 (374)
+. .++..|++| +++
T Consensus 182 --i~-~~~~~L~~~G~~v 196 (400)
T cd01555 182 --IV-DLANFLNKMGAKI 196 (400)
T ss_pred --HH-HHHHHHHHCCCEE
Confidence 33 257788888 643
No 24
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=55.73 E-value=1.7e+02 Score=32.01 Aligned_cols=123 Identities=10% Similarity=0.110 Sum_probs=68.6
Q ss_pred cCCchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeee-cCceEEEEeCCccc-CccEE
Q psy2632 18 LEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAH-IGSTEIIFYPGNIT-SGNFY 95 (374)
Q Consensus 18 ~EGGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~-~~st~l~F~PG~i~-~g~~~ 95 (374)
|+.|-| +|.-+++.++.+.+++|+.--.=+.+| .. .+ ++.|.++ +++++..+ .+...++..++.+. +++|+
T Consensus 93 g~sGtt-~r~Ll~~~al~~g~~~i~g~~~L~~RP-~~-~L---l~~L~~l-Ga~v~~~~~~g~~pi~I~g~~l~~g~~i~ 165 (661)
T PRK11860 93 GNAGTA-MRPLTAALALLGGEYELSGVPRMHERP-IG-DL---VDALRQL-GCDIDYLGNEGFPPLRIGPAPLRLDAPIR 165 (661)
T ss_pred CCchHH-HHHHHHHHHcCCCeEEEECCchhhcCC-hH-HH---HHHHHHC-CCEEEEcCCCCcccEEEECCCcCCCceEE
Confidence 355666 498888888888999888643322333 22 22 5556554 45665332 12234566677776 78888
Q ss_pred EccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 96 ADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 96 ~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
++..- |-- +.=++|..+++.++. .+++++..+.. +-.|+. .++.+|++| +.+
T Consensus 166 i~gd~--SSq-~~SalLlAA~~~~g~-~~~I~~~~~~~---s~~~i~-~t~~~L~~~G~~v 218 (661)
T PRK11860 166 VRGDV--SSQ-FLTALLMALPLVARR-DITIEVVGELI---SKPYIE-ITLNLLARFGIAV 218 (661)
T ss_pred EcCCC--cHH-HHHHHHHHHHhCCCC-CeEEEeCCCCC---CCCHHH-HHHHHHHHCCCEE
Confidence 86531 111 222667777777632 34444433322 222444 567788888 644
No 25
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=55.63 E-value=58 Score=32.76 Aligned_cols=79 Identities=13% Similarity=0.153 Sum_probs=44.7
Q ss_pred HHHHHHHhcCceEeeeecCceEEEEeC-CcccCccEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCH
Q psy2632 60 GLIVAKDICQGRLENAHIGSTEIIFYP-GNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPI 138 (374)
Q Consensus 60 ~l~ll~~l~~g~~~g~~~~st~l~F~P-G~i~~g~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~Psi 138 (374)
.+++++++ +++++. ..+. +...+ |.++++++.+++.+.+.++. +|..++++++++++ +| ....|.+
T Consensus 126 ~i~~L~~~-G~~v~~-~~~~--~~v~~~~~l~~~~~~l~~~~s~~~~~----ll~aa~~~~~~~~i--~~---~~~~~~i 192 (416)
T TIGR01072 126 HLKGLKAL-GAEIVI-EDGY--VYASAKGRLVGAHIVLDKVSVGATEN----IIMAAVLAEGTTVI--EN---AAREPEI 192 (416)
T ss_pred HHHHHHHC-CCEEEE-ECCE--EEEEecCcceeeEEecCCCCHHHHHH----HHHHHHhCCCcEEE--ec---CCcCcCH
Confidence 56777776 344432 2222 33333 56788888888754443333 34555688888765 33 3233433
Q ss_pred HHHHHHHHHHhccc-ccc
Q psy2632 139 DYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 139 Dyi~~v~~P~l~~f-~~~ 155 (374)
+ .++..|++| +.+
T Consensus 193 ~----~~~~~L~~~G~~v 206 (416)
T TIGR01072 193 V----DLCEFLNKMGAKI 206 (416)
T ss_pred H----HHHHHHHHCCCEE
Confidence 3 367788888 644
No 26
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=54.17 E-value=97 Score=33.86 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCc-eEEEEeCCcc-cCccEEEccC
Q psy2632 22 GQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGS-TEIIFYPGNI-TSGNFYADSK 99 (374)
Q Consensus 22 GQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~s-t~l~F~PG~i-~~g~~~~d~~ 99 (374)
||.+|.-+++.++...+++|+.--.=+++| ...| ++.|.++ ++++..-+..+ --++..++.+ .++.++++..
T Consensus 332 Gt~~r~L~~~~a~~~g~~~i~G~~~L~~RP--i~~l---l~~L~~l-Ga~v~~~~~~~~~p~~I~g~~~~~~~~~~v~g~ 405 (673)
T PRK11861 332 GTAVRPLTAALAVNGGEYRIHGVPRMHERP--IGDL---VDGLRQI-GARIDYEGNEGFPPLRIRPATISVDAPIRVRGD 405 (673)
T ss_pred chHHHHHHHHHHcCCCeEEEECChhhccCC--hhHH---HHHHHHC-CCcEEeCCCCCCCCEEEECCCcCCCCeEEeCCC
Confidence 899999999999998899888322112333 1223 5555554 34444221111 1255555544 3556666553
Q ss_pred CCCchHHHHHHHHHHHhcC---CCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 100 TAGSVTLIMQVALPLLLFS---SGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 100 tagSi~l~lq~lLp~llf~---~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
- | +=++=++|..+++. ++.+.+.+.|- .. |-.|+. .++-+|++| +++
T Consensus 406 ~--S-sq~iSalLlaa~~l~a~~~~~~i~~~g~-~~----S~pyv~-~t~~~L~~fG~~V 456 (673)
T PRK11861 406 V--S-SQFLTALLMTLPLVKAKDGASVVEIDGE-LI----SKPYIE-ITIKLMARFGVTV 456 (673)
T ss_pred c--c-HHHHHHHHHHhHhhccCCCCEEEEECCc-cC----CcCHHH-HHHHHHHHCCCEE
Confidence 2 2 11555666666543 34555777652 12 333554 456778888 654
No 27
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=52.28 E-value=1.5e+02 Score=29.96 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcC-CcEEEEE-EecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCcccCccEEEccCCC
Q psy2632 24 ILRMAMVFSGLLH-RPIHVFN-IRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTA 101 (374)
Q Consensus 24 ilR~alaLS~it~-kpi~I~n-IRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~~g~~~~d~~ta 101 (374)
-+|...++.+.++ .++.+.. -+-++ +|- . ..++.++++ +++++.. .+...++ .+|.++++++.+|++++
T Consensus 95 s~~~l~~~~~~~~~~~~~~~g~~~l~~-Rp~--~---~~~~~L~~l-Ga~v~~~-~~~~~v~-~~g~l~~~~~~l~~~ss 165 (417)
T PRK09369 95 SILVLGPLLARFGEAKVSLPGGCAIGA-RPV--D---LHLKGLEAL-GAEIEIE-HGYVEAK-ADGRLKGAHIVLDFPSV 165 (417)
T ss_pred HHHHHHHHhccCCceEEEecCCCccCC-Cch--H---HHHHHHHHC-CCEEEEE-CCEEEEE-ecCCcccceEeCCCCCH
Confidence 3447777766654 3788863 33222 341 2 346666666 4555432 2333333 24778888998888654
Q ss_pred CchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 102 GSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 102 gSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
+ ... .+|..+++++++++| +| ...-| |+. .++-.|++| +++
T Consensus 166 ~---~~~-~ll~aa~~~~g~~~i--~~---~~~~~---~i~-~~~~~L~~~G~~v 207 (417)
T PRK09369 166 G---ATE-NILMAAVLAEGTTVI--EN---AAREP---EIV-DLANFLNKMGAKI 207 (417)
T ss_pred H---HHH-HHHHHHHhCCCcEEE--eC---CCcCC---cHH-HHHHHHHHCCCEE
Confidence 4 222 223345677887775 33 22223 444 466677887 643
No 28
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=52.05 E-value=2.4e+02 Score=28.16 Aligned_cols=109 Identities=8% Similarity=0.032 Sum_probs=61.5
Q ss_pred HHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCcccCccEEEccCCCCchHHH
Q psy2632 28 AMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLI 107 (374)
Q Consensus 28 alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~~g~~~~d~~tagSi~l~ 107 (374)
-++++++++.+++|.|....+ +. -.+++.++++- ++++- .. -.+...++.+++ +++|+..-...+=.
T Consensus 232 ~l~~~~l~~~~v~i~~~~~~~---~~----~~~~~~L~~~G-~~v~~-~~--~~i~v~~~~~~~--~~i~~~~~~~~~d~ 298 (408)
T cd01554 232 FLVAAAIAPGRLVLQNVGINE---TR----TGIIDVLRAMG-AKIEI-GE--DTISVESSDLKA--TEICGALIPRLIDE 298 (408)
T ss_pred HHHHHhhcCCeEEEecCCCCc---hh----hHHHHHHHHcC-CEEEE-eC--CeEEEecCCcee--EEeccccCCCCchH
Confidence 356666777789999886332 21 25666676663 34432 21 236666665454 34455432234446
Q ss_pred HHHHHHHHhcCCCceEEEEEeccC--CCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 108 MQVALPLLLFSSGQSQLIVKGGTN--ADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 108 lq~lLp~llf~~~~~~ltl~GgT~--~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
...++.+++|++++++|+ |.-+ ...++-+ ..+...|++| +++
T Consensus 299 ~p~l~~~a~~a~g~~~i~--~~~~lr~ke~dr~----~~~~~~L~~~G~~i 343 (408)
T cd01554 299 LPIIALLALQAQGTTVIK--DAEELKVKETDRI----FVVADELNSMGADI 343 (408)
T ss_pred HHHHHHHHHcCCCcEEEE--CcccccccchhhH----HHHHHHHHHcCCEE
Confidence 667778888999877655 4322 2223332 2456778888 644
No 29
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=51.71 E-value=1.5e+02 Score=29.77 Aligned_cols=103 Identities=15% Similarity=0.218 Sum_probs=60.3
Q ss_pred eEEecCCccCCchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCcc
Q psy2632 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNI 89 (374)
Q Consensus 10 ~i~iDGs~~EGGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i 89 (374)
-++|+||. --|. | +|.+++++..|.+|.|+-. .+.=...+++++++ ++++... +..++..+...
T Consensus 4 ~v~i~gsk---S~~~-~-~L~~a~la~g~~~i~~~~~-------~~dv~~t~~~L~~l-G~~i~~~---~~~~~v~g~~~ 67 (408)
T cd01554 4 IIRVPGDK---SISH-R-SLIFASLAEGETKVYNILR-------GEDVLSTMQVLRDL-GVEIEDK---DGVITIQGVGM 67 (408)
T ss_pred EEEcCCch---HHHH-H-HHHHHHhCCCcEEEeCCCc-------cHHHHHHHHHHHHc-CCeEEec---CCEEEEEecCC
Confidence 46778872 1123 3 5778889999999966532 23335667777776 5566532 24565554221
Q ss_pred ---cCccEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCC
Q psy2632 90 ---TSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNAD 133 (374)
Q Consensus 90 ---~~g~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~ 133 (374)
......+|++.+++..+++-+++ +- .+.+++++|.....
T Consensus 68 ~~~~~~~~~~~~g~s~~~~~~l~a~~---~~--~~~~v~~~G~~~l~ 109 (408)
T cd01554 68 AGLKAPQNALNLGNSGTAIRLISGVL---AG--ADFEVELFGDDSLS 109 (408)
T ss_pred CCCCCCCceEEccCccHHHHHHHHHH---Hc--CCCeEEEECCchhh
Confidence 11233678877777777664443 22 24478888876543
No 30
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=51.61 E-value=1.3e+02 Score=30.85 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=67.7
Q ss_pred chhHHHHH-HHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeC--Cccc-Cc----
Q psy2632 21 GGQILRMA-MVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYP--GNIT-SG---- 92 (374)
Q Consensus 21 GGQilR~a-laLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~P--G~i~-~g---- 92 (374)
|-...-++ +++|+++.-|.+|.|.=- ..-=...++++..+ ++++.-. ..+.++...+ +... ..
T Consensus 20 ~sKs~~~r~l~~a~la~~~s~i~~~~~-------~~D~~~~~~~l~~l-G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 90 (443)
T PLN02338 20 GSKSLSNRILLLAALSEGTTVVDNLLD-------SDDIRYMLGALKTL-GLNVEED-SENNRAVVEGCGGKFPVSGDSKE 90 (443)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEcCCCc-------CHHHHHHHHHHHHc-CCeEEec-CCCCeEEEEecCCCcCCcccccc
Confidence 33677676 889999999999986631 22334566666665 3344321 2223344332 1121 11
Q ss_pred cEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 93 NFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 93 ~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
...+||+.+|....+ ++++++....+.+.++.|+-.-. .++++.+ +-.|++| +++
T Consensus 91 ~~~i~~g~sgt~~r~---l~~~~~~~~~~~~~~~~g~~~l~-~Rp~~~l----~~~L~~lGa~i 146 (443)
T PLN02338 91 DVELFLGNAGTAMRP---LTAAVTAAGGNASYVLDGVPRMR-ERPIGDL----VDGLKQLGADV 146 (443)
T ss_pred cceEEcCCcchHHHH---HHHHHHhCCCCceEEEECChhhc-cCCchHH----HHHHHHCCCEE
Confidence 246899999966665 57766665555578888887643 3444433 2345566 443
No 31
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=49.99 E-value=1.5e+02 Score=29.76 Aligned_cols=90 Identities=16% Similarity=0.294 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeC-CcccCccEEEccCCCCch
Q psy2632 26 RMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYP-GNITSGNFYADSKTAGSV 104 (374)
Q Consensus 26 R~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~P-G~i~~g~~~~d~~tagSi 104 (374)
.-+|++|+++..+.+|.|.=. ...=...++++.++ +++++ . .+..++..+ |...+ +-.+|++.+|..
T Consensus 13 ~r~l~~a~la~g~~~i~~~~~-------~~dv~~~~~~l~~l-G~~i~-~--~~~~~~i~g~~~~~~-~~~i~~g~sgt~ 80 (409)
T TIGR01356 13 HRALILAALAEGETRVRNLLR-------SEDTLATLDALRAL-GAKIE-D--GGEVAVIEGVGGKEP-QAELDLGNSGTT 80 (409)
T ss_pred HHHHHHHHhCCCCEEECCCCc-------CHHHHHHHHHHHHc-CCEEE-e--cCCEEEEEccCCCCC-CCEEEecCchHH
Confidence 345899999999999987632 22334566677665 34444 1 234455553 22222 346889888866
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeccCC
Q psy2632 105 TLIMQVALPLLLFSSGQSQLIVKGGTNA 132 (374)
Q Consensus 105 ~l~lq~lLp~llf~~~~~~ltl~GgT~~ 132 (374)
.++| ++++..++. ++++.|+-.-
T Consensus 81 ~r~l---~~l~a~~~~--~~~i~g~~~l 103 (409)
T TIGR01356 81 ARLL---TGVLALADG--EVVLTGDESL 103 (409)
T ss_pred HHHH---HHHHHcCCC--eEEEECCccc
Confidence 6644 666666664 5777786544
No 32
>PLN02338 3-phosphoshikimate 1-carboxyvinyltransferase
Probab=47.39 E-value=41 Score=34.47 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=44.8
Q ss_pred CCccChhHHHHHHHhcCCcceEEeCCCChhHHHHHHHHHHhcCceEEEEecCCCeEEEEEEeee
Q psy2632 299 FDEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMG 362 (374)
Q Consensus 299 vD~~~qdqlli~mALa~g~S~i~~g~~t~ht~t~i~v~~~~~gv~f~i~~~~~~~~~i~c~G~G 362 (374)
-+..+..-+++.-|||+|.|++.--..+..++.+++.++++ |++++.++ +++.+ ++.|.|
T Consensus 20 ~sKs~~~r~l~~a~la~~~s~i~~~~~~~D~~~~~~~l~~l-G~~~~~~~-~~~~~--~i~~~~ 79 (443)
T PLN02338 20 GSKSLSNRILLLAALSEGTTVVDNLLDSDDIRYMLGALKTL-GLNVEEDS-ENNRA--VVEGCG 79 (443)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEcCCCcCHHHHHHHHHHHHc-CCeEEecC-CCCeE--EEEecC
Confidence 35666677888888999999888888899999999999987 88876543 23443 345554
No 33
>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Probab=42.75 E-value=45 Score=33.54 Aligned_cols=58 Identities=9% Similarity=0.081 Sum_probs=43.4
Q ss_pred CccChhHHHHHHHhcCCcceEEeCCCChhHHHHHHHHHHhcCceEEEEecCCCeEEEEEEeeec
Q psy2632 300 DEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGF 363 (374)
Q Consensus 300 D~~~qdqlli~mALa~g~S~i~~g~~t~ht~t~i~v~~~~~gv~f~i~~~~~~~~~i~c~G~G~ 363 (374)
+...+.-+++..+|++|.+++.--..+.++...++.+++| |++++.. +++ +++.|.++
T Consensus 21 skS~~~r~l~~a~la~g~~~i~~~~~~~d~~~~~~~l~~l-G~~i~~~---~~~--~~i~g~~~ 78 (416)
T TIGR01072 21 AKNAALPIIAATLLTDEPVTLTNVPDLSDVKTTLDLLRNL-GARVERD---NNT--LEINTPNI 78 (416)
T ss_pred cHHHHHHHHHHHHhCCCcEEEeCCCchHHHHHHHHHHHHC-CCEEEEc---CCE--EEEECCCC
Confidence 3445667888888999999888767788899999999998 9987653 344 55667653
No 34
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=37.54 E-value=66 Score=33.39 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=44.2
Q ss_pred CCccChhHHHHHHHhcCCcceEEeCCCChhHHHHHHHHHHhcCceEEEEecCCCeEEEEEEeeec
Q psy2632 299 FDEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGF 363 (374)
Q Consensus 299 vD~~~qdqlli~mALa~g~S~i~~g~~t~ht~t~i~v~~~~~gv~f~i~~~~~~~~~i~c~G~G~ 363 (374)
=|..+-.=.+++-|||+|.|++.=--.|+-++.+++-++++ |++++-+ ++. +.+.|.|.
T Consensus 21 gSKSishRalilaaLA~g~s~i~~~L~s~D~~~tl~a~~~l-G~~i~~~---~~~--~~v~g~g~ 79 (428)
T COG0128 21 GSKSISHRALLLAALAEGESTITNLLDSEDTLATLEALRAL-GARIEKE---GDT--LVVRGTGG 79 (428)
T ss_pred CCccHHHHHHHHHHHcCCceEEeeeeccHhHHHHHHHHHHh-CCeEEcc---CCE--EEEeCCCC
Confidence 36667777899999999999888777888888888888877 8776642 234 45566543
No 35
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=34.27 E-value=75 Score=31.77 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=37.7
Q ss_pred CccChhHHHHHHHhcCCcceEEeCCCChhHHHHHHHHHHhcCceEEE
Q psy2632 300 DEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNI 346 (374)
Q Consensus 300 D~~~qdqlli~mALa~g~S~i~~g~~t~ht~t~i~v~~~~~gv~f~i 346 (374)
|.....-+++..+|++|.+++.--..+.+++..++.++++ |++++.
T Consensus 10 sKS~~~r~l~~a~la~g~~~i~~~~~~~dv~~~~~~L~~l-G~~i~~ 55 (400)
T cd01555 10 AKNAALPILAAALLTDEPVTLRNVPDLLDVETMIELLRSL-GAKVEF 55 (400)
T ss_pred cHHHHHHHHHHHHhCCCcEEEECCCChHHHHHHHHHHHHc-CCEEEE
Confidence 4555667888899999999887767788899999999998 988754
No 36
>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated
Probab=33.62 E-value=89 Score=31.61 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=43.6
Q ss_pred CccChhHHHHHHHhcCCcceEEeCCCChhHHHHHHHHHHhcCceEEEEecCCCeEEEEEEeee
Q psy2632 300 DEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMG 362 (374)
Q Consensus 300 D~~~qdqlli~mALa~g~S~i~~g~~t~ht~t~i~v~~~~~gv~f~i~~~~~~~~~i~c~G~G 362 (374)
|..+..-+++..||++|.|++.--..+.++...++.+++| |++++.+ +++. +.+.|.+
T Consensus 21 sKS~~~r~l~~a~la~g~s~i~~~~~~~dv~~t~~~l~~l-G~~i~~~--~~~~--~~i~g~~ 78 (417)
T PRK09369 21 AKNAALPILAASLLAEEPVTLTNVPDLSDVRTMIELLRSL-GAKVEFD--GNGT--VTIDASN 78 (417)
T ss_pred cHHHHHHHHHHHHhCCCCEEEecCCCcHHHHHHHHHHHHC-CCEEEEc--CCCE--EEEECCC
Confidence 4445566888889999999887778899999999999998 9887543 2234 4456654
No 37
>PF00275 EPSP_synthase: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); InterPro: IPR001986 This entry represents the core domain of 3-phosphoshikimate 1-carboxyvinyltransferase and UDP-N-acetylglucosamine 1-carboxyvinyltransferase. It transfers enolpryruvate from phosphoenolpyruvate to 3-phosphoshikimate and UDP-N-acetyl-alpha-D-glucosamine respectively. ; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 3R38_A 3SG1_A 3KR6_A 2Z2C_C 3SWD_K 3ISS_F 1A2N_A 3KQJ_A 1UAE_A 3VCY_D ....
Probab=32.78 E-value=89 Score=31.77 Aligned_cols=59 Identities=22% Similarity=0.248 Sum_probs=41.3
Q ss_pred CccChhHHHHHHHhcCCcceEEeCCCChhHHHHHHHHHHhcCceEEEEecCCCeEEEEEEee
Q psy2632 300 DEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGM 361 (374)
Q Consensus 300 D~~~qdqlli~mALa~g~S~i~~g~~t~ht~t~i~v~~~~~gv~f~i~~~~~~~~~i~c~G~ 361 (374)
|..+..-.++..||+.|.|++.--+.+..+...+..++++ |+++.-.+ ++...+++.|.
T Consensus 16 sKs~s~rali~AaLa~g~s~i~n~~~~~Dv~~~~~~l~~l-G~~i~~~~--~~~~~~~~~g~ 74 (419)
T PF00275_consen 16 SKSNSHRALIAAALAEGESRIRNVPDSDDVEATIDALRAL-GAKISWDE--ENGDTVIISGN 74 (419)
T ss_dssp -HHHHHHHHHHHHHGBSEEEEES---SHHHHHHHHHHHHT-T-EEEEEE--CTSEEEEEETT
T ss_pred ccHHHHHHHHHHHHhcCCCeEEECCchHHHHHHHHhhccc-CceeEEee--ccceEEEeccc
Confidence 4566777889999999998888778899999999999988 88875443 23344566663
No 38
>PLN00218 predicted protein; Provisional
Probab=30.87 E-value=32 Score=28.70 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=19.6
Q ss_pred CCCCchHHHHHHHHHHHhcCCC
Q psy2632 99 KTAGSVTLIMQVALPLLLFSSG 120 (374)
Q Consensus 99 ~tagSi~l~lq~lLp~llf~~~ 120 (374)
+.-|||+|+|..+||.+-|++-
T Consensus 57 pplgsislilnvllpalgfcgf 78 (151)
T PLN00218 57 PPLGSISLILNVLLPALGFCGF 78 (151)
T ss_pred CCcchHHHHHHHHHHhhccccc
Confidence 4579999999999999999875
No 39
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=30.61 E-value=1.1e+02 Score=33.65 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=41.7
Q ss_pred CccChhHHHHHHHhcCCcceEEeCCCChhHHHHHHHHHHhcCceEEEEecCCCeEEEEEEeee
Q psy2632 300 DEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMG 362 (374)
Q Consensus 300 D~~~qdqlli~mALa~g~S~i~~g~~t~ht~t~i~v~~~~~gv~f~i~~~~~~~~~i~c~G~G 362 (374)
+...|.-+|+..+|++|.+++.--..+.+....++.+++| |++++..+ ++. +++.|.|
T Consensus 321 skS~~~r~L~~a~la~g~s~i~~~~~~~dv~~ti~~L~~l-G~~v~~~~--~~~--~~i~g~~ 378 (735)
T PRK14806 321 DKSISHRSIMLGSLAEGVTEVEGFLEGEDALATLQAFRDM-GVVIEGPH--NGR--VTIHGVG 378 (735)
T ss_pred ChhHHHHHHHHHHhCCCcEEEcCCCccHHHHHHHHHHHHc-CCEEEecC--CCE--EEEEcCC
Confidence 4556666777788888888777556788999999999999 99876522 334 3455544
No 40
>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed
Probab=26.65 E-value=1.5e+02 Score=29.76 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=38.3
Q ss_pred ccChhHHHHHHHhcCCcceEEeCCCChhHHHHHHHHHHhcCceEEEEecCCCeEEEEEEee
Q psy2632 301 EHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGM 361 (374)
Q Consensus 301 ~~~qdqlli~mALa~g~S~i~~g~~t~ht~t~i~v~~~~~gv~f~i~~~~~~~~~i~c~G~ 361 (374)
...+--+++..+|++|.+.+.--+.+.++...++.+++| |++++. . +++ +++.|.
T Consensus 22 KSs~~~ll~aa~la~g~s~i~n~~~~~dv~~t~~~l~~l-G~~i~~--~-~~~--~~I~g~ 76 (417)
T PRK12830 22 KNSAVALIPAAILADGPVTLDGVPDISDVHSLVDILEEL-GGKVKR--D-GDT--LEIDPT 76 (417)
T ss_pred HHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHC-CCEEEE--c-CCE--EEEECC
Confidence 333444555556899998886667788999999999998 998754 2 334 455663
No 41
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=26.47 E-value=2.9e+02 Score=22.04 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=33.1
Q ss_pred eEEecCCccCCchhHHHHHHHHHHhcCCcEEEEEEecCC
Q psy2632 10 VLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGR 48 (374)
Q Consensus 10 ~i~iDGs~~EGGGQilR~alaLS~it~kpi~I~nIRa~r 48 (374)
++-+||| +.+-+.|+.+..++.-.+-++++-++....
T Consensus 3 lv~vd~s--~~s~~al~~a~~la~~~~~~l~ll~v~~~~ 39 (124)
T cd01987 3 LVCISGG--PNAERLIRRAARLADRLKAPWYVVYVETPR 39 (124)
T ss_pred EEEECCC--cchHHHHHHHHHHHHHhCCCEEEEEEecCc
Confidence 5779998 788999999999999999999999998544
No 42
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=22.75 E-value=2.5e+02 Score=24.98 Aligned_cols=32 Identities=16% Similarity=0.372 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCceEEEEe----cCCCeEEEEEEeee
Q psy2632 331 TAIHIAELMTSAKFNIIE----HEDKSCIIECQGMG 362 (374)
Q Consensus 331 t~i~v~~~~~gv~f~i~~----~~~~~~~i~c~G~G 362 (374)
-+.|.++-|.+.+|.... ++++.+.|+|.|-|
T Consensus 70 havwslkcFPDWeW~nv~ifeT~DP~~fwVEcdG~G 105 (162)
T PF03284_consen 70 HAVWSLKCFPDWEWYNVRIFETQDPNHFWVECDGRG 105 (162)
T ss_dssp HHHHHHHHSTT-EEEEEEEEEBSSTTEEEEEEEEEE
T ss_pred HHHHHHHHCCCcEEEEEEeecccCCCEEEEEecCcc
Confidence 468988889887774333 35789999999988
Done!