Query psy2632
Match_columns 374
No_of_seqs 128 out of 567
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 21:09:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tut_A RNA 3'-terminal phospha 100.0 3E-105 1E-109 784.8 38.8 336 7-358 21-357 (358)
2 3pqv_A RCL1 protein; RTC-like, 100.0 2E-102 6E-107 771.3 36.7 341 21-367 13-361 (365)
3 2pqc_A 3-phosphoshikimate 1-ca 85.5 9.3 0.00032 37.9 13.0 112 22-155 95-209 (445)
4 3rmt_A 3-phosphoshikimate 1-ca 85.4 4.5 0.00015 40.6 10.6 110 22-155 97-211 (455)
5 2o0b_A 3-phosphoshikimate 1-ca 81.9 8.5 0.00029 38.4 11.0 128 10-155 75-214 (450)
6 3nvs_A 3-phosphoshikimate 1-ca 79.5 11 0.00039 37.4 11.0 119 22-155 120-240 (450)
7 3slh_A 3-phosphoshikimate 1-ca 74.4 11 0.00039 37.4 9.2 112 22-155 98-211 (441)
8 1rf6_A 5-enolpyruvylshikimate- 73.8 10 0.00036 37.3 8.8 113 22-155 92-207 (427)
9 2pqc_A 3-phosphoshikimate 1-ca 64.1 25 0.00086 34.7 9.2 113 27-155 245-367 (445)
10 2yvw_A UDP-N-acetylglucosamine 63.2 29 0.001 34.0 9.4 111 23-155 101-213 (425)
11 3nvs_A 3-phosphoshikimate 1-ca 59.9 24 0.00081 35.1 8.1 128 9-155 246-384 (450)
12 3slh_A 3-phosphoshikimate 1-ca 57.6 44 0.0015 33.1 9.6 122 23-168 24-150 (441)
13 1ejd_A MURA, EPT, UDP-N-acetyl 57.3 32 0.0011 33.6 8.5 78 61-155 126-205 (419)
14 1rf6_A 5-enolpyruvylshikimate- 56.6 46 0.0016 32.6 9.5 132 9-154 212-357 (427)
15 3r38_A UDP-N-acetylglucosamine 56.3 25 0.00086 34.9 7.6 124 9-154 94-229 (454)
16 2o0b_A 3-phosphoshikimate 1-ca 55.7 35 0.0012 33.9 8.6 107 24-154 26-139 (450)
17 1ejd_A MURA, EPT, UDP-N-acetyl 51.0 31 0.0011 33.7 7.2 84 28-125 238-324 (419)
18 3rmt_A 3-phosphoshikimate 1-ca 42.3 29 0.00098 34.7 5.4 58 300-363 24-81 (455)
19 4fqd_A NIKO protein; beta/alph 33.5 61 0.0021 32.4 6.2 51 307-362 199-249 (479)
20 4fqd_A NIKO protein; beta/alph 32.9 50 0.0017 33.1 5.4 60 300-363 33-92 (479)
21 2yvw_A UDP-N-acetylglucosamine 27.4 59 0.002 31.8 4.8 45 300-345 30-74 (425)
22 3r38_A UDP-N-acetylglucosamine 20.5 1.1E+02 0.0037 30.3 5.2 52 306-363 50-103 (454)
No 1
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=100.00 E-value=3.4e-105 Score=784.77 Aligned_cols=336 Identities=31% Similarity=0.511 Sum_probs=318.1
Q ss_pred CCceEEecCCccCCchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeC
Q psy2632 7 GPDVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYP 86 (374)
Q Consensus 7 ~~~~i~iDGs~~EGGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~P 86 (374)
+.+||+||||+||||||+||+|++||+||||||+|+|||++|+||||++||+++|++++++|+|++++++.|||+|+|.|
T Consensus 21 ~~~~i~iDGs~~EGGGQ~lR~alaLS~Ltgkpv~I~nIR~~r~~PGL~~qhl~~l~ll~~it~a~veg~~~GSt~l~f~P 100 (358)
T 3tut_A 21 MKRMIALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICGATVEGAELGSQRLLFRP 100 (358)
T ss_dssp --CCEEEETTSTTCSTHHHHHHHHHHHHHCCCEEEESTTTTSSSCSCCHHHHHHHHHHHHHHTCEEECCSTTCSCEEEEC
T ss_pred cCccEEEeCCcccCchHHHHHHHHHHHhhCCCEEEEEecCCCCCccccHHHHHHHHHHHHhhCCEEEEeecCcEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCccEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cccceeEeeeecC
Q psy2632 87 GNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRG 165 (374)
Q Consensus 87 G~i~~g~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~~i~i~~~krG 165 (374)
|.+++|+|++||+|||||+||||++||+++|++.|++|+|+||||++||||+||+++||+|+|++| ++++++| .|||
T Consensus 101 G~i~gg~~~~d~~tagSi~l~lq~lLp~~lFa~~p~~l~l~GgTn~~~~psvDy~~~v~lP~l~~fG~~~~l~i--~rRG 178 (358)
T 3tut_A 101 GTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQTTL--LRHG 178 (358)
T ss_dssp CCCCCCEEEEECSSSCBHHHHHHHHHHHHTTSSSCEEEEEEEBSCCTTSCCHHHHHHTHHHHHHHHTCCEEEEE--EECC
T ss_pred CCccCceEEEECCCcccHHHHHHHHHHHHHhCCCCEEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCcEEEEE--Eecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999 9999
Q ss_pred CCCCCCcEEEEEEccCCCCcceEEeeCCceeEEEEEEEEeCCCcccHHHHHHHHHHHHHHhhCCCCCcceEEEEeecCCC
Q psy2632 166 FFPKGGGEVNVDVTPVQYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSD 245 (374)
Q Consensus 166 f~P~GgGeV~~~i~p~~~l~~i~l~~~g~i~~Irg~~~~s~~l~~~ia~r~~~~a~~~L~~~~~~~~~~i~~~~~~~~~~ 245 (374)
|||+|||||.++|+|+++|+|++|+++|+|++|||++++++ +|+++++||+++|++ .+++.+ ++++.++
T Consensus 179 ~~P~GGGeV~~~v~pv~~l~~i~l~~~G~i~rIrG~a~~~~-v~~~va~R~~~~ar~----~~~~~~--~~~~~~~---- 247 (358)
T 3tut_A 179 FYPAGGGVVATEVSPVASFNTLQLGERGNIVQMRGEVLLAG-VPRHVAEREIATLAG----SFSLHE--QNIHNLP---- 247 (358)
T ss_dssp CTTTCCEEEEEEECCCSCCCCCBCCBCCCEEEEEEEEEEES-SCHHHHHHHHHHHBT----TBCEEE--EEEEEEC----
T ss_pred ccCCCCeEEEEEEecCCCcccceeecCCCceEEEEEEEEcC-CChHHHHHHHHHHHh----cCCcce--eeeeecc----
Confidence 99999999999999999999999999999999999999998 999999999999987 345555 6676663
Q ss_pred CCcCCceEEEEEEEeccCeEEEEeccCCCCCChhHHHHHHHHHHHHHhccCCcCCccChhHHHHHHHhcCCcceEEeCCC
Q psy2632 246 KAIGNGSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQI 325 (374)
Q Consensus 246 ~~~~~G~~i~l~Aet~~g~~~g~~~lg~~g~~~E~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~g~S~i~~g~~ 325 (374)
++.+||++++||||++++| .+++++|++|++||+||++||++|+++|++|||||+|+||||++|||||+ .|+++++++
T Consensus 248 ~~~spG~gi~L~ae~~~~~-~~~~alG~~G~~aE~VG~~aA~~Ll~~l~~gg~VD~~l~Dqlil~mALa~-~s~i~~~~l 325 (358)
T 3tut_A 248 RDQGPGNTVSLEVESENIT-ERFFVVGEKRVSAEVVAAQLVKEVKRYLASTAAVGEYLADQLVLPMALAG-AGEFTVAHP 325 (358)
T ss_dssp GGGCSEEEEEEEEEESSCE-EEEEEECCTTCCHHHHHHHHHHHHHHHHTSCBSBCHHHHHHHHHHHHHHT-CCEEEESSC
T ss_pred CCCCCCeEEEEEEEEeeee-EEEEeeCCCCCCHHHHHHHHHHHHHHHHHcCCccchhhHHHHHHHHHhCC-CCeEEEcCC
Confidence 3579999999999999985 57888999999999999999999999999999999999999999999995 588999999
Q ss_pred ChhHHHHHHHHHHhcCceEEEEecCCCeEEEEE
Q psy2632 326 SLHTRTAIHIAELMTSAKFNIIEHEDKSCIIEC 358 (374)
Q Consensus 326 t~ht~t~i~v~~~~~gv~f~i~~~~~~~~~i~c 358 (374)
|+|++|++|++|+|++++|+|++.++ .+.|++
T Consensus 326 T~Ht~T~i~vie~fl~v~f~i~~~~~-~~~v~~ 357 (358)
T 3tut_A 326 SSNLLTNIAVVERFLPVRFSLIETDG-VTRVSI 357 (358)
T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEETT-EEEEEE
T ss_pred CHHHHHHHHHHHHhcCCEEEEEecCC-ceEEEe
Confidence 99999999999999999999999755 666665
No 2
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis}
Probab=100.00 E-value=1.8e-102 Score=771.29 Aligned_cols=341 Identities=20% Similarity=0.296 Sum_probs=319.0
Q ss_pred chhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCcccCccEEEccCC
Q psy2632 21 GGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSKT 100 (374)
Q Consensus 21 GGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~~g~~~~d~~t 100 (374)
|||+||+||+||+||||||+|+|||++|++|||++||+++|++++++|||+++|++++||+|+|.||.+++|+|+|||+|
T Consensus 13 GgQilR~alaLS~ltgkpvrI~nIRa~r~~PGL~~qhls~l~ll~~itng~v~g~~~gst~l~F~Pg~i~gG~~~~d~~t 92 (365)
T 3pqv_A 13 GSRNFRLRVVMATLSGKAIKIEKIRSDDLNPGLKDYEVSFLRLMEAVTNGSSIEISYTGTTVIFRPGIITGGSYTHQCPN 92 (365)
T ss_dssp SSTTHHHHHHHHHHHCCCEEEESSSTTSSSCSCCHHHHHHHHHHHHHEESCEEEECTTSSCEEEECCEECCEEEEEECCT
T ss_pred ChhHHHHHHHHHHhhCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHhCceEeeeecCCcEEEEECCcccCCeEEEECCC
Confidence 44999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cc-cceeEeeeecCCCCCCCcEEEEEE
Q psy2632 101 AGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FN-FNIDIHDVRRGFFPKGGGEVNVDV 178 (374)
Q Consensus 101 agSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~-~~i~i~~~krGf~P~GgGeV~~~i 178 (374)
||||+|+||++||+++|++.|++|+|+||||++||||+||+++||+|+|++| ++ ++++| .||||||+|||||.++|
T Consensus 93 agSi~l~l~~lL~~a~f~~~p~~l~l~GgTn~~~sPsvDy~~~v~lP~l~~fG~~~~~l~i--~rRG~~P~GGGeV~~~v 170 (365)
T 3pqv_A 93 SKPVGYFAEPMLYLAPFSKKKFSILFRGITSSHNDAGIDAIKWGLMPIMEKFGVRECALHT--LKRGSPPLGGGEVHLVV 170 (365)
T ss_dssp TSCHHHHHGGGGGTGGGSSSCEEEEEEECCCCSSSCCHHHHHHTTHHHHHHTTCCSCEEEE--EECCCTTTCCEEEEEEE
T ss_pred CcchHHHHHHHHHHHhcCCCcEEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEE--EecCCCCCCCeEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999 87 99999 99999999999999999
Q ss_pred ccC-CCCcceEEeeCCceeEEEEEEEEeCCCcccHHHHHHHHHHHHHHhhCCCCCcceEEEEeecCCCCCcCCceEEEEE
Q psy2632 179 TPV-QYIRPIELTQRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIGNGSGVYIF 257 (374)
Q Consensus 179 ~p~-~~l~~i~l~~~g~i~~Irg~~~~s~~l~~~ia~r~~~~a~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~G~~i~l~ 257 (374)
.|+ ++++|++|+++|++++|||++++++ +|+++++||+++|++.|++.++|++ |++|.++.. +++.+||++|+||
T Consensus 171 ~p~~~~l~~i~l~~~G~i~~IrG~a~~~~-v~~~~a~R~~~~a~~~L~~~~~dv~--I~~d~~~~~-~~~~spG~gi~L~ 246 (365)
T 3pqv_A 171 DSLIAQPITMHALDKTMISSIRGVSYSTR-VSPSLVNRMIDGAKKVLKSASCEVN--ITADVWRGE-NSGKSPGWGLTLV 246 (365)
T ss_dssp CCCCSSCCCCEECSCCCCCEEEEEEEEES-SCTHHHHHHHHHHHHHSTTCSSEEC--CEEEEECSG-GGCSSCEEEEEEE
T ss_pred eCccccCCcceeecCCceEEEEEEEEecC-CCHHHHHHHHHHHHHHHhhcCCCcc--EEEeecccc-ccCCCCceEEEEE
Confidence 886 5699999999999999999999998 9999999999999999999999999 999988643 5678999999999
Q ss_pred EEeccCeEEEEeccCCCCCChhHHHHHHHHHHHHHhccCCcCCccChhHHHHHHHhcC-CcceEEeCCC--ChhHHHHHH
Q psy2632 258 AATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEHTQDQLIVMMALAK-GTSRVRVGQI--SLHTRTAIH 334 (374)
Q Consensus 258 Aet~~g~~~g~~~lg~~g~~~E~vg~~aa~~Ll~~i~~g~~vD~~~qdqlli~mALa~-g~S~i~~g~~--t~ht~t~i~ 334 (374)
|||++||++++|++|++|++||+||++||++|++||++|||||+||||||++|||||+ |+|++++|+. |++++..++
T Consensus 247 Aet~~g~~~~~~~lg~~g~~aE~vg~~aa~~Ll~~i~~gg~VD~~lqdqli~~mALa~~~vs~i~~g~~~lt~~~i~~lr 326 (365)
T 3pqv_A 247 AENKQGWRIFSEAIGDAGDVPEDIGASVAYHLLEEISKSGVVGRNQLPLTILYMIIGKEDIGRLRITKDQIDERFVWLLR 326 (365)
T ss_dssp EECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTCSSSCGGGHHHHHHHHHTSSSSEEEEEECGGGCSHHHHHHHH
T ss_pred EEECCCEEEEEehhccCCCCHHHHHHHHHHHHHHHHHcCCccchhhHHHHHHHHHhCCCCcceEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996 6999999964 555555555
Q ss_pred HHHHhcCceEEEEecC--CCeEEEEEEeeeccccc
Q psy2632 335 IAELMTSAKFNIIEHE--DKSCIIECQGMGFVNKN 367 (374)
Q Consensus 335 v~~~~~gv~f~i~~~~--~~~~~i~c~G~G~~n~~ 367 (374)
.+++|||++|.+++.+ +++++++|+|+||+|.+
T Consensus 327 ~l~~~fgv~f~i~~~~~~~~~~ii~c~G~G~~N~~ 361 (365)
T 3pqv_A 327 DIKKVFGTEILLKPVDDNTTDLIATIKGIGFTNTN 361 (365)
T ss_dssp HHHHHHCCCCEEEECSSSSSCEEEEEECCCC----
T ss_pred HHHHhhCcEEEEEecCCCCCeEEEEEEEEeccccc
Confidence 5566799999998753 46899999999999955
No 3
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=85.48 E-value=9.3 Score=37.86 Aligned_cols=112 Identities=14% Similarity=0.078 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCce-EEEEeCC-cccCccEEEccC
Q psy2632 22 GQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGST-EIIFYPG-NITSGNFYADSK 99 (374)
Q Consensus 22 GQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st-~l~F~PG-~i~~g~~~~d~~ 99 (374)
|..+|.-+++.+..+-.+.+.+--.-+.+| ...|+..|+.+ +++++. +.++. =++..++ .++++++.++
T Consensus 95 gt~~r~l~~~l~~~~~~v~l~G~~~l~~Rp--~~~~l~~L~~~----Ga~i~~-~~~g~~Pi~i~~~~~l~g~~i~~~-- 165 (445)
T 2pqc_A 95 ATGCRLTMGLVGVYDFDSTFIGDASLTKRP--MGRVLNPLREM----GVQVKS-EDGDRLPVTLRGPKTPTPITYRVP-- 165 (445)
T ss_dssp HHHHHHHHHHHHTSSSEEEEECCTTGGGSC--CHHHHHHHHHT----TCEEEE-ETTTEEEEEEECCSSCCCCEEECS--
T ss_pred hHHHHHHHHHHhcCCcEEEEECCccCCCCC--hHHHHHHHHHC----CCEEEe-ccCCcccEEEeCCCCCCCeEEEeC--
Confidence 447777777775555677777654334444 34566555543 345443 22221 1555554 6888887754
Q ss_pred CCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 100 TAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 100 tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
+.-+-+..++|..++++++.++|+-. .++-||+. ..|++| +++
T Consensus 166 --~~ssq~~~~lllaa~~a~G~t~I~~~-------~~~~~~~~----~~L~~~Ga~I 209 (445)
T 2pqc_A 166 --MASAQVKSAVLLAGLNTPGITTVIEP-------IMTRDHTE----KMLQGFGANL 209 (445)
T ss_dssp --SSCHHHHHHHHHHHHTSSSEEEEEES-------SCCCCHHH----HHHHHTTCCE
T ss_pred --CCCHHHHHHHHHHHhhCCCceEEEEc-------cCCHHHHH----HHHHHCCCEE
Confidence 34557888889999999998877443 23444554 778888 654
No 4
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=85.45 E-value=4.5 Score=40.62 Aligned_cols=110 Identities=17% Similarity=0.221 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEEecC---CCCCCchHHHHHHHHHHHHhcCceEeeeecC-ceEEEEeCCcccCccEEEc
Q psy2632 22 GQILRMAMVFSGLLHRPIHVFNIRAG---RVKPGLAAQHLNGLIVAKDICQGRLENAHIG-STEIIFYPGNITSGNFYAD 97 (374)
Q Consensus 22 GQilR~alaLS~it~kpi~I~nIRa~---r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~-st~l~F~PG~i~~g~~~~d 97 (374)
|.-+|.-+++ +..++.++. +-++ +.+| ...|+.+|+.+ +++++..+-+ .-=++...+.+++++|.++
T Consensus 97 Gt~mRll~g~--la~~~~~~~-l~G~~~l~~RP--i~~~~~~L~~l----Ga~i~~~~~~~~~Pl~i~g~~l~g~~i~l~ 167 (455)
T 3rmt_A 97 GTTTRLILGI--LSTLPFHSV-IIGDESIGKRP--MKRVTEPLKSM----GAQIDGRDHGNLTPLSIRGGQLKGIDFHSP 167 (455)
T ss_dssp HHHHHHHHHH--HTTSSSEEE-EECCTTGGGSC--CHHHHHHHHHT----TCEEEEHHHHTEEEEEEECCSCBCCEEECS
T ss_pred cccHHHHHHH--HHcCCcEEE-EeCCcccccCC--HHHHHHHHHHC----CCEEEEecCCCcccEEEEeCCccceEEEEc
Confidence 4567755554 445554432 3333 2344 45777766654 4454432211 1125666778999999998
Q ss_pred cCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 98 SKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 98 ~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
..+ +=+...+|..++++++.+.|+ + . .++-|| +..+|++| +++
T Consensus 168 ~~S----sq~~s~lLlAa~~a~G~t~i~--e-p----~~s~~~----t~~~L~~~Ga~i 211 (455)
T 3rmt_A 168 VAS----AQMKSAILLAGLRAEGKTSVT--E-P----AKTRDH----TERMLEAFGVNI 211 (455)
T ss_dssp SCC----HHHHHHHHHHHHTSBSCEEEE--C-S----SCCCCH----HHHHHHHTTCCE
T ss_pred cCc----HHHHHHHHHHHHhcCCCEEEE--C-C----cCcHHH----HHHHHHHCCCCE
Confidence 543 446667888889999987753 1 1 123234 56778887 653
No 5
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=81.93 E-value=8.5 Score=38.41 Aligned_cols=128 Identities=14% Similarity=0.162 Sum_probs=82.1
Q ss_pred eEEecCCc---------cCCchhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCce
Q psy2632 10 VLNIDGSV---------LEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGST 80 (374)
Q Consensus 10 ~i~iDGs~---------~EGGGQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st 80 (374)
.+.|+|.- .+--|.-+|.-.+|.++...++.+..=-.=+++| ...|+.+|+.+ ++++.. +..
T Consensus 75 ~l~I~g~~~~l~~~~i~~g~sgts~R~l~~lla~~~~~~~l~G~~~l~~RP--i~~~~~~L~~l----Ga~i~~---~~~ 145 (450)
T 2o0b_A 75 ELTVSGRIEPGPGARVDCGLAGTVLRFVPPLAALGSVPVTFDGDQQARGRP--IAPLLDALREL----GVAVDG---TGL 145 (450)
T ss_dssp CEEEESCCCCCTTCEEECTTCHHHHHHHHHHHTTSSSEEEEECCGGGGGSC--CHHHHHHHHHT----TCEEEC---SSS
T ss_pred EEEEECCCCCcCceeeeeccchhHHHHHHHHHhcCCceEEEeCCCcCCCCC--HHHHHHHHHHC----CCEEEc---Cce
Confidence 56788741 1123478898777777666666665400013567 57888877765 344432 233
Q ss_pred EEEEeC-CcccCccEEEcc-CCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 81 EIIFYP-GNITSGNFYADS-KTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 81 ~l~F~P-G~i~~g~~~~d~-~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
.++..+ +.+++++|.++. .+++ +..++|..++++++.++|++.|.. ..+-+|+. .++.+|++| +++
T Consensus 146 p~~i~g~~~l~g~~i~i~~d~Ssq----~~salllAA~~~~g~~~I~~~~~~----~~s~p~i~-~t~~~L~~~Ga~I 214 (450)
T 2o0b_A 146 PFRVRGNGSLAGGTVAIDASASSQ----FVSGLLLSAASFTDGLTVQHTGSS----LPSAPHIA-MTAAMLRQAGVDI 214 (450)
T ss_dssp SEEEECCSCCCCEEEEECCTTCTH----HHHHHHHHGGGSTTCEEEEECSSC----CCCHHHHH-HHHHHHHHTTCCE
T ss_pred eEEEEecCCCcCcEEEcCCCCCHH----HHHHHHHHHHHcCCCeEEEeCCCC----cCCCcHHH-HHHHHHHHCCCeE
Confidence 455554 468888999886 3433 555677888899999999987632 23667776 667889998 753
No 6
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Probab=79.50 E-value=11 Score=37.39 Aligned_cols=119 Identities=12% Similarity=0.136 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCc-eEEEEeCCcccCccEEEccCC
Q psy2632 22 GQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGS-TEIIFYPGNITSGNFYADSKT 100 (374)
Q Consensus 22 GQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~s-t~l~F~PG~i~~g~~~~d~~t 100 (374)
|.-+|.-+++.+..+-++.+..=-.-+++| ...|+.+| +++ +++++..+..+ --++...+.+++++++++..-
T Consensus 120 gt~~R~l~~~la~~~~~~~l~G~~~l~~RP--i~~~l~~L---~~l-Ga~i~~~~~~g~~p~~I~g~~l~gg~i~i~g~~ 193 (450)
T 3nvs_A 120 GTAMRPLAAALCLGQGDYVLTGEPRMKERP--IGHLVDAL---RQA-GAQIEYLEQENFPPLRIQGTGLQAGTVTIDGSI 193 (450)
T ss_dssp HHHHHHHHHHTTSSBCEEEEECSGGGGGSC--CHHHHHHH---HHT-TCEEEESSSTTSSCEEEECCCCCSEEEEECCSS
T ss_pred cchHHHHHHHHhcCCcEEEEeCCcccccCC--HHHHHHHH---HHC-CCEEEEEcCCCeEeEEEEcCCcCceEEEeCCCC
Confidence 355887666665545555554321112344 34565554 444 45554322222 236666667889999988632
Q ss_pred CCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 101 AGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 101 agSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
-| -++-++|..+++++++++|+..|- ..+-.|+. .++.+|++| +++
T Consensus 194 -sS--q~~s~lLlAa~la~g~t~I~~~~~-----~~s~p~i~-~t~~~L~~~Ga~i 240 (450)
T 3nvs_A 194 -SS--QFLTAFLMSAPLAQGKVTIKIVGE-----LVSKPYID-ITLHIMEQFGVQV 240 (450)
T ss_dssp -CT--HHHHHHHHHGGGSSSCEEEEESSC-----CSSHHHHH-HHHHHHHHTTCCC
T ss_pred -cH--HHHHHHHHHHHHCCCcEEEEeCCC-----cCCchHHH-HHHHHHHHCCCCE
Confidence 22 122377888889999888877652 23555664 678888888 654
No 7
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A
Probab=74.37 E-value=11 Score=37.39 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCC-cccCccEEEccCC
Q psy2632 22 GQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPG-NITSGNFYADSKT 100 (374)
Q Consensus 22 GQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG-~i~~g~~~~d~~t 100 (374)
|.-+|.-+++.+....++.+..=-+=+++| ...|+.+|+.+ ++++ ..+.+.--++...+ .+++++|.++..+
T Consensus 98 gtt~r~l~g~l~~~~g~~~l~G~~~l~~RP--i~~~~~~L~~l----Ga~i-~~~~g~~p~~i~g~~~l~g~~i~l~~~S 170 (441)
T 3slh_A 98 GTAIRLLSGLLAGQPFNTVLTGDSSLQRRP--MKRIIDPLTLM----GAKI-DSTGNVPPLKIYGNPRLTGIHYQLPMAS 170 (441)
T ss_dssp HHHHHHHHHHHTTSSSEEEEECCTTGGGSC--CHHHHHHHHHT----TCEE-EEETTEEEEEEECCTTCBCCEEECSSCC
T ss_pred cccHHHHHHHHHhCCCEEEEeCCcccccCC--HHHHHHHHHHc----CCEE-EecCCeEEEEEEcCCCccceEEEecCCC
Confidence 556786666666555555544210002344 46788777665 4454 22333334444443 4899999998643
Q ss_pred CCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 101 AGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 101 agSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
+-+..++|..++++++++++. + -.|+.|+ +..+|++| +++
T Consensus 171 ----sq~~s~lLlAa~~a~g~t~i~-----e--~~~~~~~----t~~~L~~~Ga~i 211 (441)
T 3slh_A 171 ----AQVKSCLLLAGLYARGKTCIT-----E--PAPSRDH----TERLLKHFHYTL 211 (441)
T ss_dssp ----HHHHHHHHHHHTTSBSEEEEE-----C--SSCCCCH----HHHHHHHTTCCC
T ss_pred ----HHHHHHHHHHHHhcCCCeEee-----C--CcccHHH----HHHHHHHCCCeE
Confidence 456778889999999888773 1 1233343 45677777 543
No 8
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=73.81 E-value=10 Score=37.32 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCc-eEEEEeCC-cccCccEEEccC
Q psy2632 22 GQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGS-TEIIFYPG-NITSGNFYADSK 99 (374)
Q Consensus 22 GQilR~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~s-t~l~F~PG-~i~~g~~~~d~~ 99 (374)
|..+|...++.+..+-.+.+.+--.-+.+| ...|+..|+.+ +++++..+.++ --++..++ .++++++.++.-
T Consensus 92 gt~~rll~a~la~~~~~v~l~G~~~l~~Rp--i~~~l~~L~~m----Ga~i~~~~~~g~~pi~i~~~~~L~g~~i~~~~~ 165 (427)
T 1rf6_A 92 GTSIRLISGVLAGADFEVEMFGDDSLSKRP--MDRVTLPLKKM----GVSISGQTERDLPPLRLKGTKNLRPIHYELPIA 165 (427)
T ss_dssp HHHHHHHHHHGGGCSSEEEEECCTTGGGSC--CHHHHHHHHHT----TCEEEEETTTTEEEEEEECCTTCCCCEEECSSC
T ss_pred chHHHHHHHHHhcCCcEEEEeCCCccCCCC--HHHHHHHHHHC----CCEEEEEcCCCcceEEEeccCCCCceEEEeCCC
Confidence 346777666665444455555433223333 34566655544 34444321223 23666664 689998876521
Q ss_pred CCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 100 TAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 100 tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
| +=+...+|..++++++.++|... .++-||+. ..|++| +++
T Consensus 166 ---s-sq~~s~lllaA~~a~G~t~I~~~-------~~~~~~i~----~~L~~~Ga~i 207 (427)
T 1rf6_A 166 ---S-AQVKSALMFAALQAKGESVIIEK-------EYTRNHTE----DMLQQFGGHL 207 (427)
T ss_dssp ---C-HHHHHHHHHHHTTSSEEEEEECS-------SCCCCHHH----HHHHHTTCCC
T ss_pred ---C-HHHHHHHHHHHHhcCCCeEEEec-------cCCHHHHH----HHHHHCCCCE
Confidence 2 26788889999999998876332 34556665 578888 654
No 9
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*
Probab=64.15 E-value=25 Score=34.67 Aligned_cols=113 Identities=11% Similarity=0.131 Sum_probs=70.0
Q ss_pred HHHHHHHhcCCc-EEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeec---C-c--eEEEEeCCcccCccEEEccC
Q psy2632 27 MAMVFSGLLHRP-IHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHI---G-S--TEIIFYPGNITSGNFYADSK 99 (374)
Q Consensus 27 ~alaLS~it~kp-i~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~---~-s--t~l~F~PG~i~~g~~~~d~~ 99 (374)
+-++.+++++-. ++|.|+..++..++ +++.|.++ +++++..+. + . ..|+..++.+++.+ +|+.
T Consensus 245 ~~l~aa~~~~g~~v~i~~~~~~~~~~~-------~~~~L~~m-Ga~i~~~~~~~~~g~~~~~i~v~~~~l~~~~--i~~~ 314 (445)
T 2pqc_A 245 FPLVAALLVPGSDVTILNVLMNPTRTG-------LILTLQEM-GADIEVINPRLAGGEDVADLRVRSSTLKGVT--VPED 314 (445)
T ss_dssp HHHHHHHHSTTCEEEEEEEECCGGGCH-------HHHHHHHH-TCEEEEEEEEEETTEEEEEEEEECCCCBCCE--ECGG
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCcch-------HHHHHHHc-CCeEEEccccccCCCccCcEEEeCCCCCceE--eccc
Confidence 334566677766 99999985554442 67777776 355543210 2 1 45777776677754 4444
Q ss_pred CCCchHHHHHHHHHHHhcCCCceEEEEEeccC--CCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 100 TAGSVTLIMQVALPLLLFSSGQSQLIVKGGTN--ADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 100 tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~--~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
..-+.+-.+.+++.+++|++++++|+ +.-+ +..+ |.+. .+...|++| +++
T Consensus 315 ~~p~~~D~~p~l~~~a~~a~G~s~i~--~~~~lr~kEs---dRi~-~~~~eL~~~Ga~i 367 (445)
T 2pqc_A 315 RAPSMIDEYPILAVAAAFAEGATVMN--GLEELRVKES---DRLS-AVANGLKLNGVDC 367 (445)
T ss_dssp GGGGTGGGHHHHHHHHTTSBSEEEEC--CCGGGGGSSS---CHHH-HHHHHHHHTTCEE
T ss_pred cCCchHHHHHHHHHHHHhCCCcEEEE--cccccccccc---hHHH-HHHHHHHHCCCEE
Confidence 33334477888899999999988766 4333 3222 3443 456788888 654
No 10
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A*
Probab=63.17 E-value=29 Score=34.01 Aligned_cols=111 Identities=15% Similarity=-0.010 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHhcCC-cEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCcccCccEEEccCCC
Q psy2632 23 QILRMAMVFSGLLHR-PIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGNITSGNFYADSKTA 101 (374)
Q Consensus 23 QilR~alaLS~it~k-pi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~i~~g~~~~d~~ta 101 (374)
..+|.-.+|.+..++ .+.+.-=-.=+++| ...|+.+|+.+ ++++.. +. + .+.++.+.++++++.++.
T Consensus 101 ts~~~l~~l~a~~~~~~~~l~G~~~l~~RP--i~~~~~~L~~l----Ga~i~~-~~-g-~~~i~~~~l~g~~i~~~~--- 168 (425)
T 2yvw_A 101 ASVLSLGPLLGRFGRAVVGLPGGCSIGARP--IDQHLKFFKEA----GADVEV-RE-G-YVYVNLKEKRRVHFKFDL--- 168 (425)
T ss_dssp GGGGGHHHHHHHHSEEEEECCCCBTTBCCC--CHHHHHHHHHT----TCEEEE-ET-T-EEEEECSSCCCCEEECSS---
T ss_pred hHHHHHHHHhccCCcEEEEECCCcccccCC--HHHHHHHHHHC----CCEEEe-cC-C-EEEEEecCccceEEeccc---
Confidence 344566677666654 66555321113455 46676666554 445543 22 3 477777778898998884
Q ss_pred CchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 102 GSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 102 gSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
.| ..+...+|..++++++.++|. | .++-+|+.. ++..|++| +++
T Consensus 169 ~S-~~~~s~lllaa~la~g~t~i~-----~---~~~~~~i~~-t~~~L~~~Ga~i 213 (425)
T 2yvw_A 169 VT-VTGTENALLYLASVPEESILE-----N---IALEPEVMD-LIEVLKKMGAHV 213 (425)
T ss_dssp CC-HHHHHHHHHHHTTCSSEEEEE-----S---CCCCHHHHH-HHHHHHHTTCEE
T ss_pred cc-HHHHHHHHHHHHhcCCCEEEe-----C---CCCCchHHH-HHHHHHHCCCeE
Confidence 23 345666777778888877554 3 366677774 48888888 654
No 11
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 3ti2_A* 1p88_A ...
Probab=59.87 E-value=24 Score=35.08 Aligned_cols=128 Identities=11% Similarity=0.090 Sum_probs=77.5
Q ss_pred ceEEecCCc-cCCchhH------HHHH--HHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCc
Q psy2632 9 DVLNIDGSV-LEGGGQI------LRMA--MVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGS 79 (374)
Q Consensus 9 ~~i~iDGs~-~EGGGQi------lR~a--laLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~s 79 (374)
..+.|+|.. +.+++.+ .+-+ ++++++++.+++|.|...+...+ + ..+++.++++ +++++- ..
T Consensus 246 ~~i~I~g~~~l~~~~~~~v~~D~s~As~~l~aaal~~g~v~i~~~~~~~~~~---D--~~i~~~L~~m-Ga~i~~---~~ 316 (450)
T 3nvs_A 246 QEFVIPAGQSYVSPGQFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQG---D--IQFADALEKM-GAQIEW---GD 316 (450)
T ss_dssp TEEEECTTCCCBCCSEEECCBCHHHHHHHHHHHHHHCSEEEEESCCTTCSCG---G--GGHHHHHHHH-TCEEEE---CS
T ss_pred cEEEEcCCccccCCcceEecCCHHHHHHHHHHHHhcCCeEEEccCCcccccc---h--HHHHHHHHHc-CCeEEE---eC
Confidence 467888864 4454222 3322 46778899999999998665433 2 3447777776 455442 33
Q ss_pred eEEEEeCCcccCccEEEc-cCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-ccc
Q psy2632 80 TEIIFYPGNITSGNFYAD-SKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 80 t~l~F~PG~i~~g~~~~d-~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~ 155 (374)
..++..++.+++.++..+ ++ =+.+++..++.++++++.|+ |.-+..+--+ |=+. .+...|++| .++
T Consensus 317 ~~i~v~~~~L~g~~i~~~~~P------D~~~~l~~~aa~A~G~t~I~--~~~~lR~ke~-dRi~-~l~~eL~kmGa~I 384 (450)
T 3nvs_A 317 DYVIARRGELNAVDLDFNHIP------DAAMTIATTALFAKGTTAIR--NVYNWRVKET-DRLA-AMATELRKVGATV 384 (450)
T ss_dssp SEEEEECCCCBCCEEECTTCT------TTHHHHHHHGGGSBSCEEEE--SCGGGGGSSS-CHHH-HHHHHHHHTTCEE
T ss_pred CEEEEecCCcCcEEeecCCCc------CHHHHHHHHHHHCCCCEEEe--chhhccCCCc-hHHH-HHHHHHHHcCCEE
Confidence 457777888888765543 33 24566778888999988875 6554432211 2122 344567777 643
No 12
>3slh_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P GPJ SKM PGE 1PE PG4; 1.70A {Coxiella burnetii} PDB: 3roi_A* 4egr_A* 4gfp_A 3tr1_A
Probab=57.60 E-value=44 Score=33.06 Aligned_cols=122 Identities=10% Similarity=0.078 Sum_probs=71.7
Q ss_pred hHHH-HHHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeCCc---ccCccEEEcc
Q psy2632 23 QILR-MAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYPGN---ITSGNFYADS 98 (374)
Q Consensus 23 QilR-~alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~PG~---i~~g~~~~d~ 98 (374)
...= =+|++|+++.-+.+|+|+= =. .-=.+.+++++++ +++++. ...+..++..+.. +....-.+||
T Consensus 24 Ks~s~r~l~~aaLa~g~s~i~n~~------~~-~D~~~~~~~L~~l-G~~i~~-~~~~~~~~i~~~~~~~~~~~~~~i~~ 94 (441)
T 3slh_A 24 KSISHRAVLLAAIAEGQTQVDGFL------MG-ADNLAMVSALQQM-GASIQV-IEDENILVVEGVGMTGLQAPPEALDC 94 (441)
T ss_dssp HHHHHHHHHHHHHSBSEEEEESCC------CS-HHHHHHHHHHHHT-TCEEEE-EGGGTEEEEECCCTTCCCCCSSCEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEcCCC------Cc-HHHHHHHHHHHHc-CCEEEE-ecCCCEEEEeccccCCCCCCcceeee
Confidence 4433 3678899999999999772 12 2234678888887 445542 2134467777653 3333446899
Q ss_pred CCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cccceeEeeeecCCCC
Q psy2632 99 KTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FNFNIDIHDVRRGFFP 168 (374)
Q Consensus 99 ~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~~~i~i~~~krGf~P 168 (374)
+.+|....+| +++++.... +.+|.|+-.-. ..|+|-+- -.|++| +.+ . ...||.|
T Consensus 95 g~sgtt~r~l---~g~l~~~~g--~~~l~G~~~l~-~RPi~~~~----~~L~~lGa~i---~--~~~g~~p 150 (441)
T 3slh_A 95 GNSGTAIRLL---SGLLAGQPF--NTVLTGDSSLQ-RRPMKRII----DPLTLMGAKI---D--STGNVPP 150 (441)
T ss_dssp TTCHHHHHHH---HHHHTTSSS--EEEEECCTTGG-GSCCHHHH----HHHHHTTCEE---E--EETTEEE
T ss_pred ccccccHHHH---HHHHHhCCC--EEEEeCCcccc-cCCHHHHH----HHHHHcCCEE---E--ecCCeEE
Confidence 9999777755 566555444 44588866543 34444332 234556 443 3 4455544
No 13
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=57.27 E-value=32 Score=33.64 Aligned_cols=78 Identities=9% Similarity=0.061 Sum_probs=50.3
Q ss_pred HHHHHHhcCceEeeeecCceEEEEeC-CcccCccEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHH
Q psy2632 61 LIVAKDICQGRLENAHIGSTEIIFYP-GNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPID 139 (374)
Q Consensus 61 l~ll~~l~~g~~~g~~~~st~l~F~P-G~i~~g~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiD 139 (374)
++.|+++ +++++. +.+ .+.++. +.++++++.++.. | +-+...++..++|++++++|+ |.. +=+
T Consensus 126 ~~~L~~m-Ga~i~~-~~g--~~~v~~~~~L~g~~i~~~~~---s-~~~~~~ll~aa~~a~G~t~I~-----~~~---~e~ 189 (419)
T 1ejd_A 126 IFGLEKL-GAEIKL-EEG--YVKASVNGRLKGAHIVMDKV---S-VGATVTIMSAATLAEGTTIIE-----NAA---REP 189 (419)
T ss_dssp HHHHHHT-TCEEEE-ETT--EEEEECSSSCBCCEEECSSC---C-HHHHHHHHHHHTTSBSEEEEE-----TCC---CCH
T ss_pred HHHHHHC-CCEEEE-cCC--EEEEEEcCCccceEEecCCC---C-HHHHHHHHHHHhcCCCcEEEE-----eCC---CCc
Confidence 5555555 345543 222 466664 4789998887742 4 345788899999999988654 332 224
Q ss_pred HHHHHHHHHhccc-ccc
Q psy2632 140 YYIHLWRPVFCHF-FNF 155 (374)
Q Consensus 140 yi~~v~~P~l~~f-~~~ 155 (374)
|+. .+...|++| +++
T Consensus 190 ~i~-~t~~~L~~~Ga~i 205 (419)
T 1ejd_A 190 EIV-DTANFLVALGAKI 205 (419)
T ss_dssp HHH-HHHHHHHHTTCEE
T ss_pred hHH-HHHHHHHHCCCEE
Confidence 666 677888998 653
No 14
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=56.65 E-value=46 Score=32.62 Aligned_cols=132 Identities=12% Similarity=0.140 Sum_probs=75.5
Q ss_pred ceEEecCC-ccCCch----hHHHHH---HHHHHhcCCc-EEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecC-
Q psy2632 9 DVLNIDGS-VLEGGG----QILRMA---MVFSGLLHRP-IHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIG- 78 (374)
Q Consensus 9 ~~i~iDGs-~~EGGG----QilR~a---laLS~it~kp-i~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~- 78 (374)
+.+.|.|- .+.|+- --.|.| ++.+++++-+ ++|.|+..+-..|+ +++.++++- ++++-.+..
T Consensus 212 ~~i~I~g~~~l~g~~~~v~~D~~~A~~~~~Aa~~~~g~~v~i~~~~~~~~~~~-------~~~~L~~mG-a~i~~~~~~~ 283 (427)
T 1rf6_A 212 KKITVQGPQKLTGQKVVVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTG-------IIDVIRAMG-GKLEITEIDP 283 (427)
T ss_dssp TEEEEEECCCCBCCEEECCBCHHHHHHHHHHHHHSTTEEEEEEEEECCTTTCH-------HHHHHHHTT-CEEEEEEEET
T ss_pred CEEEEcCCcccCCCeEEcCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCChhH-------HHHHHHHcC-CcEEEccccC
Confidence 35667763 344321 134544 4456777766 99999975444442 777888763 444321110
Q ss_pred c---eEEEEeCCcccCccEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cc
Q psy2632 79 S---TEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FN 154 (374)
Q Consensus 79 s---t~l~F~PG~i~~g~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~ 154 (374)
. ..|+..++.+++ ..+|+......+=..+++..++.|++++++|+ |.-+...--| |=+. .+..-|+|| ++
T Consensus 284 ~~~~~~i~v~~~~l~~--~~i~~~~~p~~~D~~p~l~~la~~a~G~s~i~--~~~~lr~kEs-dR~~-~~~~eL~~lGa~ 357 (427)
T 1rf6_A 284 VAKSATLIVESSDLKG--TEICGALIPRLIDELPIIALLATQAQGVTVIK--DAEELKVKET-DRIQ-VVADALNSMGAD 357 (427)
T ss_dssp TTTEEEEEEECCCCBC--CEECTTSGGGTGGGHHHHHHHHHTSBEEEEEC--SCGGGGGSSS-CTTH-HHHHHHHTTTCC
T ss_pred CCCcceEEEeCCCCCc--EEeccccCCChHHHHHHHHHHHHhCCCcEEEE--cccccccchh-HHHH-HHHHHHHHCCCE
Confidence 2 457777666665 34566543334578888899999999988865 5444221111 1111 245677787 64
No 15
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Probab=56.31 E-value=25 Score=34.94 Aligned_cols=124 Identities=12% Similarity=0.067 Sum_probs=72.7
Q ss_pred ceEEecCCccCC------chhHHH----HHHHHHHhcCC-cEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeec
Q psy2632 9 DVLNIDGSVLEG------GGQILR----MAMVFSGLLHR-PIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHI 77 (374)
Q Consensus 9 ~~i~iDGs~~EG------GGQilR----~alaLS~it~k-pi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~ 77 (374)
+.+.|||.-..+ =+.-.| ...+|++..++ .+.+..=-.=+++| ...|+.+|+.+ ++++.. +
T Consensus 94 ~~~~i~~~~~~~~~~~~~~~~~~Ras~l~l~~l~a~~~~~~~~l~G~~~l~~RP--i~~~~~~L~~l----Ga~i~~-~- 165 (454)
T 3r38_A 94 DEVTVDATGEITSDAPFEYVRKMRASIVVMGPLLARTGSARVALPGGCAIGSRP--VDLHLKGFEAM----GAVVKI-E- 165 (454)
T ss_dssp TEEEEECCSCCCCEECSHHHHHCGGGGGGHHHHHHHHSEEEEECCCCCSSSSCC--SHHHHHHHHHT----TCEEEE-E-
T ss_pred CEEEEECCCCCCCcCChhHhhccchHHHHHHHHHhCCCCeEEEeCCCcccccCC--HHHHHHHHHHC----CCEEEe-c-
Confidence 357788862111 123456 56666666654 55554211113445 45677776654 334432 2
Q ss_pred CceEEEEeCCcccCccEEEccCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cc
Q psy2632 78 GSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FN 154 (374)
Q Consensus 78 ~st~l~F~PG~i~~g~~~~d~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~ 154 (374)
++ .+.++.+.+++++|++|..+++ +...+|..++++++.++|+ |.... +|+. .++-+|++| ++
T Consensus 166 ~g-~~~i~~~~l~g~~~~l~~~S~q----~~s~lLlAa~la~G~t~I~-----~~~~~---p~i~-~t~~~L~~~Ga~ 229 (454)
T 3r38_A 166 NG-YIEATAEKLVGAKVYLDFPSVG----ATQNIMMAATLAEGTTVIE-----NVARE---PEIV-DLANFLNQMGAR 229 (454)
T ss_dssp TT-EEEEECSSCBCCEEECSSCCHH----HHHHHHHHHTTSBSEEEEE-----SCCCC---HHHH-HHHHHHHHTTCC
T ss_pred CC-EEEEEEcCccCcEEEecCCCHH----HHHHHHHHHhcCCCcEEEE-----cCCCC---cHHH-HHHHHHHHCCCC
Confidence 22 4677777799999999975433 5677888889999887763 44333 3444 357788888 64
No 16
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A
Probab=55.74 E-value=35 Score=33.87 Aligned_cols=107 Identities=18% Similarity=0.129 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcC----CcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeC--CcccCccEEEc
Q psy2632 24 ILRMAMVFSGLLH----RPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYP--GNITSGNFYAD 97 (374)
Q Consensus 24 ilR~alaLS~it~----kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~P--G~i~~g~~~~d 97 (374)
.+|. |++++++. -+++|+|. |-.++- ...++++.++ +++++. .++ .++..+ +.+++ ..+|
T Consensus 26 s~R~-l~~aaLa~~~~~g~~~i~~~------l~~~D~-~~~~~~L~~l-Ga~i~~--~~~-~l~I~g~~~~l~~--~~i~ 91 (450)
T 2o0b_A 26 TNRA-LVLAALAAAQGRGASTISGA------LRSRDT-ELMLDALQTL-GLRVDG--VGS-ELTVSGRIEPGPG--ARVD 91 (450)
T ss_dssp HHHH-HHHHHHHHHTTCCCEEEETC------CCSHHH-HHHHHHHHHT-TCEEEC--SSS-CEEEESCCCCCTT--CEEE
T ss_pred HHHH-HHHHHhcCCCCCCeEEEecC------CCchHH-HHHHHHHHHc-CCEEEE--eCC-EEEEECCCCCcCc--eeee
Confidence 3555 44888988 89999977 334443 3667888887 445542 122 466665 33554 5688
Q ss_pred cCCCCchHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCCHHHHHHHHHHHhccc-cc
Q psy2632 98 SKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGTNADMAPPIDYYIHLWRPVFCHF-FN 154 (374)
Q Consensus 98 ~~tagSi~l~lq~lLp~llf~~~~~~ltl~GgT~~~~~PsiDyi~~v~~P~l~~f-~~ 154 (374)
++.+|...- .+.|++++.+. .+++.|+-.-..-| +|. ++-.|++| ++
T Consensus 92 ~g~sgts~R---~l~~lla~~~~--~~~l~G~~~l~~RP-i~~----~~~~L~~lGa~ 139 (450)
T 2o0b_A 92 CGLAGTVLR---FVPPLAALGSV--PVTFDGDQQARGRP-IAP----LLDALRELGVA 139 (450)
T ss_dssp CTTCHHHHH---HHHHHHTTSSS--EEEEECCGGGGGSC-CHH----HHHHHHHTTCE
T ss_pred eccchhHHH---HHHHHHhcCCc--eEEEeCCCcCCCCC-HHH----HHHHHHHCCCE
Confidence 887775444 44566655554 47788875554445 443 33445566 54
No 17
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 3kqa_A* 3lth_A* 3spb_A 3swq_A* 3upk_A* 1naw_A 1dlg_A 1ryw_A* 1q3g_A* 3su9_A* 3swi_A* 3v4t_A* 3v5v_A* 3swa_A* 1uae_A* 3kqj_A* 3kr6_A* ...
Probab=51.00 E-value=31 Score=33.66 Aligned_cols=84 Identities=14% Similarity=0.065 Sum_probs=55.9
Q ss_pred HHHHHHhcCCcEEEEEEecCCCCCCchHHHHHHHHHHHHhcCceEeeeecCceEEEEeC--CcccCccEEEccCCC-Cch
Q psy2632 28 AMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQGRLENAHIGSTEIIFYP--GNITSGNFYADSKTA-GSV 104 (374)
Q Consensus 28 alaLS~it~kpi~I~nIRa~r~~PGL~~qhl~~l~ll~~l~~g~~~g~~~~st~l~F~P--G~i~~g~~~~d~~ta-gSi 104 (374)
-++.+++++-+|+|.|...++ + | .+++.++++ +++++. +...|+..+ +.+++-+ +|+... |..
T Consensus 238 ~~~aa~~~~g~v~i~~~~~~~----~--~--~~~~~L~~m-Ga~i~~---~~~~i~v~~~~~~l~~~~--i~~~~~p~~~ 303 (419)
T 1ejd_A 238 FLVAAAISGGKIVCRNAQPDT----L--D--AVLAKLREA-GADIET---GEDWISLDMHGKRPKAVT--VRTAPHPAFP 303 (419)
T ss_dssp HHHHHHTTTCEEEEESCCGGG----C--H--HHHHHHHHT-TCEEEE---CSSEEEEECTTCCCBCCC--EECCSTTSCC
T ss_pred HHHHHHhcCCeEEEeCcCccc----H--H--HHHHHHHHC-CCEEEE---cCCEEEEEecCCCccceE--EeCCCCCCCc
Confidence 466777889999999886322 2 1 688888887 455543 345577766 6677643 444321 334
Q ss_pred HHHHHHHHHHHhcCCCceEEE
Q psy2632 105 TLIMQVALPLLLFSSGQSQLI 125 (374)
Q Consensus 105 ~l~lq~lLp~llf~~~~~~lt 125 (374)
+=..+++..++.|++++++|+
T Consensus 304 ~D~~p~la~la~~a~g~s~i~ 324 (419)
T 1ejd_A 304 TDMQAQFTLLNLVAEGTGVIT 324 (419)
T ss_dssp GGGHHHHHHHHHTSBSEEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEE
Confidence 467778888999999988876
No 18
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=42.25 E-value=29 Score=34.69 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=44.7
Q ss_pred CccChhHHHHHHHhcCCcceEEeCCCChhHHHHHHHHHHhcCceEEEEecCCCeEEEEEEeeec
Q psy2632 300 DEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGF 363 (374)
Q Consensus 300 D~~~qdqlli~mALa~g~S~i~~g~~t~ht~t~i~v~~~~~gv~f~i~~~~~~~~~i~c~G~G~ 363 (374)
|.....-.+++.|||+|.|++.--+.+.-+++.+..++++ |++++.+ ++. +++.|.|.
T Consensus 24 sKs~s~Rali~AaLa~g~s~i~n~~~~~Dv~~~~~~L~~l-G~~i~~~---~~~--~~i~g~~~ 81 (455)
T 3rmt_A 24 DKSISHRAVMFGALAKGTTTVEGFLPGADCLSTISCFQKL-GVSIEQA---EER--VTVKGKGW 81 (455)
T ss_dssp CHHHHHHHHHHHHHSBSCEEEESCCCSHHHHHHHHHHHTT-TCEEEEE---TTE--EEEECCCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEccCCccHHHHHHHHHHHHc-CCeEEec---CCE--EEEeCCCC
Confidence 4555556788999999999988778899999999999887 9998753 344 45666553
No 19
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae}
Probab=33.48 E-value=61 Score=32.43 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=38.7
Q ss_pred HHHHHHhcCCcceEEeCCCChhHHHHHHHHHHhcCceEEEEecCCCeEEEEEEeee
Q psy2632 307 LIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMG 362 (374)
Q Consensus 307 lli~mALa~g~S~i~~g~~t~ht~t~i~v~~~~~gv~f~i~~~~~~~~~i~c~G~G 362 (374)
+++..+||+|.+.+.-...++|....++++++| |++++.+. ++. +++.|.|
T Consensus 199 lLlaa~la~G~t~I~~~~~~pdi~~Tl~~L~~~-Ga~I~~~~--~~~--i~I~g~g 249 (479)
T 4fqd_A 199 ALLMGAVTHGTTTLQHPYLKPDVTDMVTVLRDL-GADIEFAG--PET--WVIHGRG 249 (479)
T ss_dssp HHHHHHTSEEEEEEESCCCSHHHHHHHHHHHHH-TCCEEEEE--TTE--EEEEEEC
T ss_pred HHHHHHhCCCcEEEecCCCChHHHHHHHHHHHC-CCeEEEcC--CCE--EEEeCCC
Confidence 667778899998887656688888888999998 99987643 233 6777774
No 20
>4fqd_A NIKO protein; beta/alpha inverse barrel, enolpyruvyl transferase, fosfomyc binding, transferase; 2.50A {Streptomyces tendae}
Probab=32.89 E-value=50 Score=33.07 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=44.9
Q ss_pred CccChhHHHHHHHhcCCcceEEeCCCChhHHHHHHHHHHhcCceEEEEecCCCeEEEEEEeeec
Q psy2632 300 DEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGF 363 (374)
Q Consensus 300 D~~~qdqlli~mALa~g~S~i~~g~~t~ht~t~i~v~~~~~gv~f~i~~~~~~~~~i~c~G~G~ 363 (374)
|.....-+++.-|||+|.|++.--..+.-++..+..++++ |++++..+ +++. +++.|.|.
T Consensus 33 sKs~s~r~l~~aaLa~g~s~i~n~~~s~D~~~~~~~l~~l-G~~i~~~~-~~~~--~~i~g~~~ 92 (479)
T 4fqd_A 33 FKHSLVTTVAAAATASAPVRIENCPDIVETAVLGEIFRAA-GAHAHYDG-ADET--FTVDASAW 92 (479)
T ss_dssp CHHHHHHHHHHHTTCSSEEEEESCCCSHHHHHHHHHHHHT-TCEEEEET-TTTE--EEEECTTC
T ss_pred cHHHHHHHHHHHHhcCCCEEEccCCCchhHHHHHHHHHHc-CCEEEEec-CCCE--EEEECCCC
Confidence 4555556788888999999988888899999999999987 99877531 2444 45666654
No 21
>2yvw_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; peptidoglycan, structu genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus} PDB: 3swg_A*
Probab=27.43 E-value=59 Score=31.81 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=37.5
Q ss_pred CccChhHHHHHHHhcCCcceEEeCCCChhHHHHHHHHHHhcCceEE
Q psy2632 300 DEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFN 345 (374)
Q Consensus 300 D~~~qdqlli~mALa~g~S~i~~g~~t~ht~t~i~v~~~~~gv~f~ 345 (374)
|.....-+++.-|||+|.|++.--..+..+++.+..++++ |++++
T Consensus 30 sKs~s~r~l~~aaLa~g~~~i~n~~~~~D~~~~~~~l~~l-G~~i~ 74 (425)
T 2yvw_A 30 AKNAALPIMFATILTEEPCTITNVPDLLDVRNTLLLLREL-GAELE 74 (425)
T ss_dssp CHHHHHHHHHHGGGCSSCEEEESCCCSHHHHHHHHHHHHT-TCEEE
T ss_pred cHHHHHHHHHHHHhCCCCEEEecCCchHHHHHHHHHHHHC-CCEEE
Confidence 4455555777788999999998888999999999999998 99886
No 22
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A*
Probab=20.53 E-value=1.1e+02 Score=30.31 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=38.7
Q ss_pred HHHHHHH-hc-CCcceEEeCCCChhHHHHHHHHHHhcCceEEEEecCCCeEEEEEEeeec
Q psy2632 306 QLIVMMA-LA-KGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQGMGF 363 (374)
Q Consensus 306 qlli~mA-La-~g~S~i~~g~~t~ht~t~i~v~~~~~gv~f~i~~~~~~~~~i~c~G~G~ 363 (374)
.-+++.| || +|.|++.--..+.-++..+..++++ |++++.+ ++. +++.|.|.
T Consensus 50 ~~~l~aa~La~~g~s~i~n~~~~~D~~~~~~~l~~l-G~~i~~~---~~~--~~i~~~~~ 103 (454)
T 3r38_A 50 LPVIAATLLASKGTSVLKNVPNLSDVFTINEVLKYL-NADVSFV---NDE--VTVDATGE 103 (454)
T ss_dssp HHHHHHGGGEEESCEEEESCCCCHHHHHHHHHHHHT-TCEEEEE---TTE--EEEECCSC
T ss_pred HHHHHHHHhCCCCeEEECCCCCcHHHHHHHHHHHHC-CCEEEEE---CCE--EEEECCCC
Confidence 3455555 88 9999998888899999999999987 9988753 344 45666553
Done!