RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2632
(374 letters)
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate
cyclase, RPTC {Escherichia coli [TaxId: 562]}
Length = 239
Score = 219 bits (560), Expect = 6e-71
Identities = 75/212 (35%), Positives = 111/212 (52%), Gaps = 3/212 (1%)
Query: 11 LNIDGSVLEGGGQILRMAMVFSGLLHRPIHVFNIRAGRVKPGLAAQHLNGLIVAKDICQG 70
+ +DG+ EGGGQILR A+ S + +P + +IRAGR KPGL QHL + A +IC
Sbjct: 2 IALDGAQGEGGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICGA 61
Query: 71 RLENAHIGSTEIIFYPGNITSGNFYADSKTAGSVTLIMQVALPLLLFSSGQSQLIVKGGT 130
+E A +GS ++F PG + G++ +AGS TL++Q LP L F+ G S++ V GGT
Sbjct: 62 TVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFADGPSRVEVSGGT 121
Query: 131 NADMAPPIDYYIHLWRPVFCHFFNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELT 190
+ APP D+ + P+ + +R GF+P GGG V +V+PV ++L
Sbjct: 122 DNPSAPPADFIRRVLEPLL-AKIGIHQQTTLLRHGFYPAGGGVVATEVSPVASFNTLQLG 180
Query: 191 QRGELTAVWG--HAFVAGGVKMNTAQTMADTA 220
GE A +AG + A
Sbjct: 181 AVGEYLADQLVLPMALAGAGEFTVAHPSCHLL 212
Score = 45.2 bits (107), Expect = 4e-06
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 297 ICFDEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCI 355
E+ DQL++ MALA G V S H T I + E +F++IE + + +
Sbjct: 180 GAVGEYLADQLVLPMALA-GAGEFTVAHPSCHLLTNIAVVERFLPVRFSLIETDGVTRV 237
>d1qmha1 c.47.2.1 (A:185-279) RNA 3'-terminal phosphate cyclase,
RPTC, insert domain {Escherichia coli [TaxId: 562]}
Length = 95
Score = 46.4 bits (110), Expect = 2e-07
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 12/103 (11%)
Query: 191 QRGELTAVWGHAFVAGGVKMNTAQTMADTAYDYLVKSYPDFKTKLKITTYQLSSDKAIGN 250
+RG + + G +A GV + A+ T + + G
Sbjct: 1 ERGNIVQMRGEVLLA-GVPRHVAEREIATLAGSFSLHEQNIHNL----------PRDQGP 49
Query: 251 GSGVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSL 293
G+ V + + G R S KE+ L
Sbjct: 50 GNTVSLEVESENITERFFVV-GEKRVSAEVVAAQLVKEVKRYL 91
>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD
{Escherichia coli [TaxId: 562]}
Length = 161
Score = 29.0 bits (64), Expect = 0.56
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 9 DVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVF 42
D++N + V+ Q R M L HR ++
Sbjct: 6 DIVNEENEVI---AQASREQMRAQCLRHRATYIV 36
>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079
{Deinococcus radiodurans str. R1 (Deinococcus
radiodurans R1) [TaxId: 243230]}
Length = 162
Score = 28.6 bits (63), Expect = 0.77
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 9 DVLNIDGSVLEGGGQILRMAMVFSGLLHRPIHVF 42
D++N V+ GQILR R ++ F
Sbjct: 4 DLVNERDEVV---GQILRTDPALRWERVRVVNAF 34
>d1ezwa_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 347
Score = 27.8 bits (60), Expect = 2.3
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 293 LCENICFD-----EHTQ--DQLIVMMALAKGTSRVRVGQ--ISLHTRTAIHIAELM 339
+ E+ F+ +H + V+ A TS++++G + +TR + A +
Sbjct: 24 VAEDNGFEYAWICDHYNNYSYMGVLTLAAVITSKIKLGPGITNPYTRHPLITASNI 79
>d1m8na_ b.81.2.1 (A:) Thermal hysteresis protein {Spruce budworm
(Choristoneura fumiferana), 7-turn isoforms [TaxId:
7141]}
Length = 120
Score = 25.8 bits (56), Expect = 4.3
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 252 SGVYIFAATSTGARYSG-GCNGS 273
+G+YI ++T+TG SG GC+ S
Sbjct: 73 NGIYIRSSTTTGTSISGPGCSIS 95
>d1rhca_ c.1.16.3 (A:) Coenzyme F420 dependent secondary alcohol
dehydrogenase {Archaeon Methanoculleus thermophilicus
[TaxId: 2200]}
Length = 330
Score = 26.6 bits (57), Expect = 4.7
Identities = 6/69 (8%), Positives = 17/69 (24%)
Query: 300 DEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEHEDKSCIIECQ 359
+ + M A + T +V + + A + + + + +
Sbjct: 47 NAQSAQAWAWMGAALQATKKVFISTCITCPIMRYNPAIVAQTFATLRQMYPGRVGVAVGA 106
Query: 360 GMGFVNKNW 368
G
Sbjct: 107 GEAMNEVPV 115
>d1f45b_ a.26.1.1 (B:) Heterodimeric interleukin-12 alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 26.1 bits (57), Expect = 5.0
Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 6/80 (7%)
Query: 270 CNGSPRTS---PGECGLNAAKELWSSLC-ENICFDEHTQDQLIVMMALAKGTSRVRVGQI 325
C S TS G C + +LC +I D + QI
Sbjct: 55 CLNSRETSFITNGSCLASRKTSFMMALCLSSIYEDLKMYQVE--FKTMNAKLLMDPKRQI 112
Query: 326 SLHTRTAIHIAELMTSAKFN 345
L I ELM + FN
Sbjct: 113 FLDQNMLAVIDELMQALNFN 132
>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor
(ABP-120) repeats {Dictyostelium discoideum [TaxId:
44689]}
Length = 108
Score = 25.7 bits (56), Expect = 5.1
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 153 FNFNIDIHDVRRGFFPKGGGEVNVDVTPVQYIRPIELTQRGELT 196
F F + + + GG + V +T ++ + T
Sbjct: 12 FTFTVAAKNKKGEVKTYGGDKFEVSITGPAEEITLDAIDNQDGT 55
>d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 26.5 bits (57), Expect = 5.3
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 253 GVYIFAATSTGARYSGGCNGSPRTSPGECGLNAAKELWSSLCENICFDEH--TQDQLIVM 310
++ F T Y G GS G A+ + +D +V
Sbjct: 4 NMFWFLPTHGDGHYLGTEEGSRPVDHGYL-QQIAQAADRLGYTGVLIPTGRSCEDAWLVA 62
Query: 311 MALAKGTSRVRVG 323
++ T R++
Sbjct: 63 ASMIPVTQRLKFL 75
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot
basidiomycete (Phanerochaete chrysosporium) [TaxId:
5306]}
Length = 343
Score = 26.5 bits (58), Expect = 5.5
Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 7/54 (12%)
Query: 252 SGVYIFAATSTGARYSGGCNGS-------PRTSPGECGLNAAKELWSSLCENIC 298
S A + G GG +GS GL+ + +
Sbjct: 49 SIAISPAMEAKGKFGGGGADGSIMIFDTIETAFHPNIGLDEVVAMQKPFVQKHG 102
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase)
{Arthromyces ramosus [TaxId: 5451]}
Length = 336
Score = 26.2 bits (57), Expect = 6.6
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 252 SGVYIFAATSTGARYSGGCNGSP-------RTSPGECGLNAAKELWSSLCE 295
+ + A T+ G GG +GS P GL E ++
Sbjct: 50 AIGFSPALTAAGQFGGGGADGSIIAHSNIELAFPANGGLTDTIEALRAVGI 100
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa
(LmjF30.0810) {Leishmania major [TaxId: 5664]}
Length = 254
Score = 26.1 bits (56), Expect = 8.0
Identities = 7/61 (11%), Positives = 19/61 (31%)
Query: 290 WSSLCENICFDEHTQDQLIVMMALAKGTSRVRVGQISLHTRTAIHIAELMTSAKFNIIEH 349
+ ++ + + G + + S TR+ IH L + +++
Sbjct: 176 FVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235
Query: 350 E 350
Sbjct: 236 A 236
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.421
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,391,142
Number of extensions: 63180
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 17
Length of query: 374
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,213,086
Effective search space: 348155682
Effective search space used: 348155682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.2 bits)