BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2633
(764 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q293F6|SSRP1_DROPS FACT complex subunit Ssrp1 OS=Drosophila pseudoobscura
pseudoobscura GN=Ssrp PE=3 SV=2
Length = 727
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/718 (57%), Positives = 527/718 (73%), Gaps = 21/718 (2%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
MT++LE+ ++++E RG L G+LK+TDQNI+FKN KTGKVEQI+ D+D +N QK VGTW
Sbjct: 1 MTDSLEYNDINAEVRGVLSSGRLKLTDQNIIFKNNKTGKVEQISVDDIDLINSQKFVGTW 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
LR+F K+G+LHRF GF+++E +K+ F K + ++ EKE+ V+GWNWG +F+G+VLS
Sbjct: 61 GLRVFTKSGALHRFTGFRDSEHEKLGKFIKDAYSQEMVEKEMCVKGWNWGTARFMGSVLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD ++ T FE+PL VSQC TGKNEVT+E+H ND+A L+EMRF+IP E A D DPVE
Sbjct: 121 FDKDSKTIFEVPLSHVSQCVTGKNEVTLEYHQNDDAPVGLLEMRFHIPAVESA-DDDPVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
F +VM++ASVI+A+G++IA+F EIQ LTPRGRYDIKIF++FFQLHGKTFDYKIP+ +V
Sbjct: 180 KFHQNVMSKASVISASGESIAIFREIQILTPRGRYDIKIFSTFFQLHGKTFDYKIPMDSV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFV+SLDPPIKQGQTRYH+L LLF DE + +ELPFSE EL++KYE
Sbjct: 240 LRLFMLPHKDSRQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIELPFSEAELRDKYE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
GKL+KELSGP YEVM K+MKV++ RKIT PG+F GH+GT+AV CS+KAAAGY+YPLERGF
Sbjct: 300 GKLEKELSGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKAAAGYLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I+IHKPP+HIRFEEI++VNFARSGGSTRSFDFE+ LK+G +H FSSIEKEEY KLFDFI
Sbjct: 360 IYIHKPPLHIRFEEISSVNFARSGGSTRSFDFEVTLKNGTVHIFSSIEKEEYAKLFDFIT 419
Query: 421 EKKLRVKNTGKGEKPNYKE-DFGSSDDEKEPDAYLARVKREA---AERDDEDDEDEDEST 476
+KKL V N GK +K YK+ DFG SD+E EPDAYLAR+K EA E DD+ D+ ++EST
Sbjct: 420 QKKLHVSNMGK-DKSGYKDVDFGDSDNENEPDAYLARLKAEAREKEEEDDDGDDSDEEST 478
Query: 477 DEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKD 536
DEDF P++ ESDVAEEYDSN D+ + G ++K + +K K
Sbjct: 479 DEDFKPNENESDVAEEYDSNVEDDSDDDSDASGGGGDGGTDGSTKKKHKEKKNEKKEKTH 538
Query: 537 KESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVS 596
KE KKKD PK+ SA+M+W ND RE IK++NPGI TEIAKKGGE+WK +
Sbjct: 539 KEKEKIKKPTKKKDTGKPKRGTSAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL- 597
Query: 597 SKEKAEYDEKVNKAKEDYNEALKAYKE-SGGGQDSDDGKTSKSKK-------PAKKKETA 648
K+K++++E NK K Y E ++ YK +GGG + + G TSK+ K P+KK T+
Sbjct: 598 -KDKSKWEEAANKDKIRYQEEMRNYKSGAGGGSEDEKGGTSKATKKRKSEPSPSKKANTS 656
Query: 649 STAVSPHKVKSKEFIESNGSSSDSDDDKKASSKRKRDSDEDSKAKTKKKKEKSESESD 706
+ KSKE+I + S+SD + K K+K S + K K KK E +SD
Sbjct: 657 GSG-----FKSKEYISDDESTSDDQEKVKEIPKKKNKSTAEDKDKNSKKSESEGGDSD 709
>sp|Q05344|SSRP1_DROME FACT complex subunit Ssrp1 OS=Drosophila melanogaster GN=Ssrp PE=1
SV=2
Length = 723
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/701 (56%), Positives = 520/701 (74%), Gaps = 22/701 (3%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
MT++LE+ ++++E RG LC G+LK+T+QNI+FKN KTGKVEQI+ D+D +N QK VGTW
Sbjct: 1 MTDSLEYNDINAEVRGVLCSGRLKMTEQNIIFKNTKTGKVEQISAEDIDLINSQKFVGTW 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
LR+F K G LHRF GF+++E +K+ F K + ++ EKE+ V+GWNWG +F+G+VLS
Sbjct: 61 GLRVFTKGGVLHRFTGFRDSEHEKLGKFIKAAYSQEMVEKEMCVKGWNWGTARFMGSVLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD + T FE+PL VSQC TGKNEVT+EFH ND+A L+EMRF+IP E A + DPV+
Sbjct: 121 FDKESKTIFEVPLSHVSQCVTGKNEVTLEFHQNDDAPVGLLEMRFHIPAVESA-EEDPVD 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
F +VM++ASVI+A+G++IA+F EIQ LTPRGRYDIKIF++FFQLHGKTFDYKIP+ +V
Sbjct: 180 KFHQNVMSKASVISASGESIAIFREIQILTPRGRYDIKIFSTFFQLHGKTFDYKIPMDSV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFV+SLDPPIKQGQTRYH+L LLF DE + +ELPFSE EL++KYE
Sbjct: 240 LRLFMLPHKDSRQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIELPFSEAELRDKYE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
GKL+KE+SGP YEVM K+MKV++ RKIT PG+F GH+GT+AV CS+KAAAGY+YPLERGF
Sbjct: 300 GKLEKEISGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKAAAGYLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I+IHKPP+HIRFEEI++VNFARSGGSTRSFDFE+ LK+G +H FSSIEKEEY KLFD+I
Sbjct: 360 IYIHKPPLHIRFEEISSVNFARSGGSTRSFDFEVTLKNGTVHIFSSIEKEEYAKLFDYIT 419
Query: 421 EKKLRVKNTGKGEKPNYKE-DFGSSDDEKEPDAYLARVK--REAAERDDEDDEDEDESTD 477
+KKL V N GK +K YK+ DFG SD+E EPDAYLAR+K E DD+D + ++ESTD
Sbjct: 420 QKKLHVSNMGK-DKSGYKDVDFGDSDNENEPDAYLARLKAEAREKEEDDDDGDSDEESTD 478
Query: 478 EDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKDK 537
EDF P++ ESDVAEEYDSN D+ + G +K ++ + ++ ++ K +
Sbjct: 479 EDFKPNENESDVAEEYDSNVESDSDDDSDASGGGGDSDGAKKKKEKKSEKKEKKEKKHKE 538
Query: 538 ESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSS 597
+ +KKKD PK+ +A+M+W ND RE IK++NPGI TEIAKKGGE+WK +
Sbjct: 539 KERTKKPSKKKKDSGKPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL-- 596
Query: 598 KEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKK-------PAKKKETAST 650
K+K+++++ K K+ Y++ ++ YK GG DSD+ K KS K P+KK T+ +
Sbjct: 597 KDKSKWEDAAAKDKQRYHDEMRNYKPEAGG-DSDNEKGGKSSKKRKTEPSPSKKANTSGS 655
Query: 651 AVSPHKVKSKEFIESNGSSSDSD--DDKKASSKRKRDSDED 689
KSKE+I + S+S D D++ A K K SD D
Sbjct: 656 G-----FKSKEYISDDDSTSSDDEKDNEPAKKKSKPPSDGD 691
>sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2
Length = 708
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/723 (51%), Positives = 501/723 (69%), Gaps = 33/723 (4%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M E LEF ++ E +G++ G+L+++ Q I+FKN KTGKV+ I +L W+++
Sbjct: 1 MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L++ KNG ++++ GF+E+E +K+ FFKT++++++ EK+L V+GWNWG KF G +LS
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD+ + FEIPL +VSQCTTGKNEVT+EFH ND+A SL+E+RFY+P + G DPVE
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDG-VDPVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +V+++A VI ATGDAI +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 180 AFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++DE + L +E+E+++++E
Sbjct: 240 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
G+L K +SG YE+++++MK +VNRKITVPG+F+GH+G +TCSYKA++G +YPLERGF
Sbjct: 300 GRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+HIRF+EI+ VNFAR +TRSFDFEIE K G +TFSSIE+EEYGKLFDF+
Sbjct: 360 IYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVN 419
Query: 421 EKKLRVKNTG--KGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDEDDEDEDES--- 475
KKL +KN G +G P Y +D+ S DE + DAYL R+K E R++ ++ D+S
Sbjct: 420 AKKLNIKNRGLKEGINPGY-DDYADS-DEDQHDAYLERMKEEGKIREENANDSSDDSGEE 477
Query: 476 TDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKK 535
TDE FNP + E DVAEE+DSN + + S + D+ KK+++ K K K RKS++
Sbjct: 478 TDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDREEKKREQLKRAKMA----KDRKSRR 533
Query: 536 DKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTV 595
S +K KD NAPK+PMSAYM+W N REKIK D+PGIS T+++KK GE+WK +
Sbjct: 534 K-----SSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGM 588
Query: 596 SSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKPAKKKETASTAVSPH 655
S ++K E+D K A+ +Y +A+K Y E G G S K+ K KK K E ST
Sbjct: 589 SKEKKEEWDRKAEDARREYEKAMKEY-EGGRGDSSKRDKSKKKKKVKAKMEKKSTPSRGS 647
Query: 656 K-----------VKSKEFIESNGSSSDSDDDKKASSKRKRDSD-EDSKAKTKKKKEKSES 703
KSKEF+ S+ SSS + KK KR+R D E+ A T E S S
Sbjct: 648 SSKSSSRQLSDSFKSKEFVSSDESSSGENKSKK---KRRRSEDSEEELASTPPSSEDSAS 704
Query: 704 ESD 706
SD
Sbjct: 705 GSD 707
>sp|Q04931|SSRP1_RAT FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2
Length = 709
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/722 (51%), Positives = 501/722 (69%), Gaps = 30/722 (4%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M E LEF ++ E +G++ G+L+++ Q I+FKN KTGKV+ I +L W+++
Sbjct: 1 MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L++ KNG ++++ GF+E+E +K+ FFKT++++++ EK+L V+GWNWG KF G +LS
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD+ + FEIPL +VSQCTTGKNEVT+EFH ND+A SL+E+RFY+P + G DPVE
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDG-VDPVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +V+++A VI ATGDAI +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 180 AFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++DE + L +E+E+++++E
Sbjct: 240 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
G+L K +SG YE+++++MK +VNRKITVPG+F+GH+G +TCSYKA++G +YPLERGF
Sbjct: 300 GRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+HIRF+EI+ VNFAR +TRSFDFEIE K G +TFSSIE+EEYGKLFDF+
Sbjct: 360 IYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVN 419
Query: 421 EKKLRVKNTG--KGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDEDDEDEDES--- 475
KKL +KN G +G P Y +D+ SD E + DAYL R+K E R++ ++ D+S
Sbjct: 420 AKKLNIKNRGLKEGINPGY-DDYADSD-EDQHDAYLERMKEEGKIREENANDSSDDSGEE 477
Query: 476 TDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKK 535
TDE FNP + E DVAEE+DSN + + S + D+ KK+K+ K K K RKS+K
Sbjct: 478 TDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDREEKKRKQLKRAKMA----KDRKSRK 533
Query: 536 DKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTV 595
S +K KD NAPK+PMSAYM+W N REKIK D+PGIS T+++KK GE+WK +
Sbjct: 534 KS-----SEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGM 588
Query: 596 SSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKPAKKKETASTAVSPH 655
S ++K E+D K A+ +Y +A+K Y E G G S K+ K KK K E ST
Sbjct: 589 SKEKKEEWDRKAEDARREYEKAMKEY-EGGRGDSSKRDKSKKKKKVKAKLEKKSTPSRGS 647
Query: 656 K-----------VKSKEFIESNGSSSDSDDDKKASSKRKRDSDEDSKAKTKKKKEKSESE 704
KSKEF+ S+ SSS + KK +R DSDE+ A T E S S
Sbjct: 648 SSKSSSRQLSDSFKSKEFVSSDESSSGENKSKK-KRRRSEDSDEEELASTPPSSEDSASG 706
Query: 705 SD 706
SD
Sbjct: 707 SD 708
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
Length = 706
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/624 (53%), Positives = 451/624 (72%), Gaps = 15/624 (2%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M + LEF E+ E +G++ G+L+++ Q ++FKN KTGKV+ I +L W+++
Sbjct: 1 MADTLEFNEIYQEVKGSMNDGRLRLSRQGVIFKNSKTGKVDNIQASELAEGVWRRVALGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L++ KNG ++++ GF+E+E DK+ FFK ++++++ EK+L V+GWNWG +F G +LS
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFDKLSDFFKAHYRLELAEKDLCVKGWNWGTVRFGGQLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD+ FEIPL +VSQCTTGKNEVT+EFH ND+A SL+E+RFY+P + G DPVE
Sbjct: 121 FDIGEQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDG-VDPVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +V+++A VI ATGDAI +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 180 AFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++DE + L +E+E+++++E
Sbjct: 240 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
G+L K +SG YE+++++MK +VNRKITVPG+F+GH+G +TCSYKA++G +YPLERGF
Sbjct: 300 GRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+HIRF+EI+ VNFAR +TRSFDFEIE K G +TFSSIE+EEYGKLFDF+
Sbjct: 360 IYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVN 419
Query: 421 EKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDEDDEDED---ESTD 477
KKL +KN G E D + DE + DAYL R+K E R++ ++ D E TD
Sbjct: 420 AKKLNIKNRGLKEGMKQSYDEYADSDEDQHDAYLERMKEEGKIREENANDSSDGSGEETD 479
Query: 478 EDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKDK 537
E FNP + + DVAEE+DSN + + S D D+ G KK K + I KPR KK
Sbjct: 480 ESFNPGEEDDDVAEEFDSNASASSSSGDGDSDRGEKKPAK---KAKIVKDRKPR--KKQV 534
Query: 538 ESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSS 597
ES +K KD NAPK+PMSAYM+W N REKIK D+PGIS T+++KK GELWK +S
Sbjct: 535 ES------KKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGISITDLSKKAGELWKAMSK 588
Query: 598 KEKAEYDEKVNKAKEDYNEALKAY 621
++K E+D K AK DY +A+K Y
Sbjct: 589 EKKEEWDRKAEDAKRDYEKAMKEY 612
>sp|Q08945|SSRP1_HUMAN FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1
Length = 709
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/697 (51%), Positives = 482/697 (69%), Gaps = 37/697 (5%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M E LEF +V E +G++ G+L+++ Q I+FKN KTGKV+ I +L W+++
Sbjct: 1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L++ KNG ++++ GF+E+E +K+ FFKT++++++ EK+L V+GWNWG KF G +LS
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD+ + FEIPL +VSQCTTGKNEVT+EFH ND+A SL+E+RFY+P + G DPVE
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDG-VDPVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +V+++A VI ATGDAI +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 180 AFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++DE + L +E+E+++++E
Sbjct: 240 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
G+L K +SG YE+++++MK +VNRKITVPG+F+GH+G +TCSYKA++G +YPLERGF
Sbjct: 300 GRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+HIRF+EI+ VNFAR +TRSFDFEIE K G +TFSSIE+EEYGKLFDF+
Sbjct: 360 IYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVN 419
Query: 421 EKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDEDDEDEDES---TD 477
KKL +KN G E N D + DE + DAYL R+K E R++ ++ D+S TD
Sbjct: 420 AKKLNIKNRGLKEGMNPSYDEYADSDEDQHDAYLERMKEEGKIREENANDSSDDSGEETD 479
Query: 478 EDFNPDQAESDVAEEYDSNPTPT------DSDEDSDASEGTKKKKKEKSRKTITISEKPR 531
E FNP + E DVAEE+DSN + + DSD D + KK K K RK+ +KP
Sbjct: 480 ESFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKS---RKKPV 536
Query: 532 KSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGEL 591
+ KK KD NAPK+PMSAYM+W N REKIK D+PGIS T+++KK GE+
Sbjct: 537 EVKKG------------KDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEI 584
Query: 592 WKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKPAKKKETAST- 650
WK +S ++K E+D K A+ DY +A+K Y E G G+ S K+ K KK K E ST
Sbjct: 585 WKGMSKEKKEEWDRKAEDARRDYEKAMKEY-EGGRGESSKRDKSKKKKKVKVKMEKKSTP 643
Query: 651 ----------AVSPHKVKSKEFIESNGSSSDSDDDKK 677
KSKEF+ S+ SSS + KK
Sbjct: 644 SRGSSSKSSSRQLSESFKSKEFVSSDESSSGENKSKK 680
>sp|Q9W602|SSRP1_XENLA FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1
Length = 693
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/680 (50%), Positives = 473/680 (69%), Gaps = 36/680 (5%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M + LEF ++ E +G++ G+L+++ +++KN KTGKVE I+ D+ V W+++
Sbjct: 1 MADTLEFNDIYQEVKGSMNDGRLRLSRAGLMYKNNKTGKVENISAADIAEVVWRRVALGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
+++ G ++++ GF+ETE DK+ +FK++F +++ EK+L V+GWNWG +F G +LS
Sbjct: 61 GIKLLTNGGHVYKYDGFRETEYDKLFDYFKSHFSVELVEKDLCVKGWNWGSVRFGGQLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD+ + AFE+PL +VSQCTTGKNEVT+EFH ND++ SL+E+RFY+P + G D VE
Sbjct: 121 FDIGDQPAFELPLSNVSQCTTGKNEVTLEFHQNDDSEVSLMEIRFYVPPTQDDGG-DSVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +V+++A VI ATGDA+ +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 180 AFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++DE + L SE+E++ ++E
Sbjct: 240 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDMTLTLNMSEEEVERRFE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
GKL K +SG YE+++++MK +VNRKITVPG+F GH+G+ +TCSYKA++G +YPLERGF
Sbjct: 300 GKLKKSMSGCLYEMVSRVMKALVNRKITVPGNFLGHSGSQCITCSYKASSGLLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+HIRF+EI VNFAR +TRSFDFEIE K G +TFSSIE+EEYGKLFDF+
Sbjct: 360 IYVHKPPVHIRFDEITCVNFARGTTTTRSFDFEIETKQGSQYTFSSIEREEYGKLFDFVN 419
Query: 421 EKKLRVKNTG--KGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDEDDEDEDESTDE 478
KKL +KN G +G KP Y +D+ SD+++ DAYL R+K E R++ D ++ + TDE
Sbjct: 420 AKKLSIKNRGLKEGMKPAY-DDYADSDEDQH-DAYLERMKEEGKIRENADSDESGDETDE 477
Query: 479 DFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKDKE 538
FNP + E +VAEE+DSNP+ + S S+ KKK+ R I +KPRK + K
Sbjct: 478 SFNPGEEEEEVAEEFDSNPS---ASSSSADSDDDTDKKKDAKRAKIVKQKKPRKKPEAK- 533
Query: 539 SSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSK 598
K KD APK+PMSAYM+W N REKIK +NPGIS T+++KK GE+WK +S
Sbjct: 534 --------KTKDPGAPKRPMSAYMLWLNASREKIKSENPGISITDLSKKAGEIWKNMSRD 585
Query: 599 EKAEYDEKVNKAKEDYNEALKAYKESGGGQDS---------------DDGKTSKSKKPAK 643
+K E+D + +AK DY +A+K Y S + S + K K PA+
Sbjct: 586 KKEEWDRRAEEAKRDYEKAMKEYNTSAPTEASKKEKKTKGEKKKAETSEKKKQKPSSPAR 645
Query: 644 KKETASTAVSPHKVKSKEFI 663
A+ ++ KSKEF+
Sbjct: 646 ----AAPKLNSESFKSKEFV 661
>sp|Q4H2R2|SSRP1_CIOIN FACT complex subunit SSRP1 OS=Ciona intestinalis GN=SSRP1 PE=2 SV=1
Length = 704
Score = 588 bits (1515), Expect = e-167, Method: Compositional matrix adjust.
Identities = 308/665 (46%), Positives = 448/665 (67%), Gaps = 11/665 (1%)
Query: 3 EALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWAL 62
+ L+++ V E RGA+ G+L++ + IVFKN KTGK++ I DL W+++ + L
Sbjct: 6 QFLDYKNVFQENRGAMHDGRLQLLKEKIVFKNNKTGKIDSIQQNDLHSALWRRVARDFEL 65
Query: 63 RIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFD 122
+ + +G + RF GFKE E +++ F K +KID+ +ELS +GWNWG T F GN + F
Sbjct: 66 KFQMNSGQVFRFDGFKEMEFERLKDFVKNYYKIDLEHQELSGKGWNWGTTDFEGNEMMFQ 125
Query: 123 VNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVEAF 182
V +FEIPL +VSQCT K+EVT+EFH ND++ SL+EMRF+IP ++ D V+ F
Sbjct: 126 VGQKLSFEIPLNNVSQCTQNKDEVTMEFHQNDDSELSLMEMRFFIPPSQDEM-IDKVKDF 184
Query: 183 KDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLR 242
D+VM +A V+ G AI VF ++QCLTPRGRYDI+++ F QLHGKTFDYKI +++LR
Sbjct: 185 HDNVMAKADVLQVKGTAICVFQDLQCLTPRGRYDIRMYPKFIQLHGKTFDYKITYTSILR 244
Query: 243 MFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGK 302
+F LPHKD RQ FFV+SLDPP+KQG TRYHFL LLF +++ +EL + E++E++ GK
Sbjct: 245 LFLLPHKDQRQIFFVVSLDPPLKQGMTRYHFLILLFYKEDDLAVELSLPDDEIEERFGGK 304
Query: 303 LDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIF 362
L K++SGP YEV++++MK +V RKITVPGSF+G G ++TC+YKA++G+++PLERGF++
Sbjct: 305 LQKDMSGPMYEVVSRVMKHLVQRKITVPGSFKGLNGVQSITCTYKASSGFLFPLERGFMY 364
Query: 363 IHKPPIHIRFEEIATVNFARSGGST---RSFDFEIELKSGVLHTFSSIEKEEYGKLFDFI 419
+HKPP+HIRF+EIA VNFAR G+T +SFDFEIE +S FS+IE+++Y L+DF+
Sbjct: 365 VHKPPVHIRFDEIAYVNFAR--GTTKINKSFDFEIETRSKNNFVFSNIERDQYASLYDFV 422
Query: 420 REKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDE-DDEDEDESTDE 478
K+L++KN GK + ++ S +D D Y+ R+K+EAAER+ + DD+D+DES D+
Sbjct: 423 HNKQLKIKNIGK-DGADFDLMVDSDEDADVHDPYMERMKQEAAEREKQVDDDDDDESEDD 481
Query: 479 DFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKDKE 538
DF P+ ++V EEY+S+ S + E +++ +EK +K + +K+
Sbjct: 482 DFQPETNVAEVEEEYNSDVGSASSGASDEEEEDGEEEVEEKPKKRKKEKVMKERRQKE-- 539
Query: 539 SSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSK 598
+ G KRKKKD NAPK+P SAY +W N+ R + K +N GIS TE+ K G+ WK +
Sbjct: 540 -TPGKVKRKKKDPNAPKRPQSAYFLWLNENRGRFKAENKGISVTELTKLAGKEWKKIDPD 598
Query: 599 EKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKPAKKKETASTAVSPHKVK 658
EK +++ K+K ++ A+K YK GGG+ S K K + +S+ VSP K K
Sbjct: 599 EKQKFERMYQKSKVKFDAAMKEYKSQGGGRTSSSPAKKMKMKSPKPSKASSSMVSPSKFK 658
Query: 659 SKEFI 663
SKEFI
Sbjct: 659 SKEFI 663
>sp|O01683|SSP1B_CAEEL FACT complex subunit ssrp1-B OS=Caenorhabditis elegans GN=hmg-3
PE=3 SV=1
Length = 689
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 268/676 (39%), Positives = 406/676 (60%), Gaps = 30/676 (4%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
MTE L+F+ V E G L G L +T+ +I F K GK I G D+D + WQKL
Sbjct: 1 MTE-LKFKGVYVEDIGHLTCGTLTLTENSINFIGDKGGKSVYITGTDVDKLKWQKLGNKP 59
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
LR+ L +G HRF GF + ++ KI SF +N+ + + L + GWN+G G +
Sbjct: 60 GLRVGLSDGGAHRFGGFLDDDLQKIQSFTSSNWSKSINQSNLFINGWNYGQADVKGKNIE 119
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTN-EIAGDTDPV 179
F N FEIP +VS KNE +EFH N+++ L+EMRF++P + E DTD V
Sbjct: 120 FSWENEPIFEIPCTNVSNVIANKNEAILEFHQNEQSKVQLMEMRFHMPVDLENEEDTDKV 179
Query: 180 EAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPIST 239
E FK +V+ A + T I + +I C TPRGRYDIK++ + LHGKT+DYKIP+ T
Sbjct: 180 EEFKKAVLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPVKT 239
Query: 240 VLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKY 299
+ R+F +PHKDGRQ +FV+SL+PPI+QGQT Y +L F +DE ++EL ++++L + +
Sbjct: 240 INRLFLVPHKDGRQVYFVLSLNPPIRQGQTHYSYLIFEFGKDEEEDLELSLTDEQL-DYF 298
Query: 300 EGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERG 359
G L +E++GP YE ++ + K I N K+TVPG F G +GT A+ C+++ G +YP+E+G
Sbjct: 299 NGNLQREMTGPIYETISILFKSICNLKVTVPGRFLGSSGTPAIQCTHRQNLGLLYPMEKG 358
Query: 360 FIFIHKPPIHIRFEEIATVNFAR--SGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFD 417
F+FI KP ++IRFEEI++ +FAR SG TR+FDFEI+LK+G TFS+++KEE KLFD
Sbjct: 359 FLFIQKPVMYIRFEEISSCHFARSDSGTVTRTFDFEIDLKTGSSLTFSAMDKEENNKLFD 418
Query: 418 FIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDEDDEDEDES-- 475
++ +K+++++N+ + + N +GSS DE + D Y + VK E E+DD+ D++ +
Sbjct: 419 YLNKKEIKIRNSHRID--NKSAGYGSS-DEDDIDPYKSTVKAEGREQDDDSDDESTDEDY 475
Query: 476 -TDEDFNPDQAESDVAEEYDSNP-TPTDSDEDSDASEGTKKKKKEKS-----RKTITISE 528
D+D + + D +E S P DS + DAS + E++ +++
Sbjct: 476 DLDKDMKKQKNDKDSSEGSGSEPDDEYDSGSEKDASGTGESDPDEENIEPKKKESKEKKN 535
Query: 529 KPRKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKG 588
K K +K + +K KD N PK+ +AY++WFN R +K+D G + ++AKK
Sbjct: 536 KREKKEKPVKEKAVKKGKKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKA 593
Query: 589 GELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKPAKKKETA 648
G WK++S+ +K E+++K + K Y +K YK++GGG K+ P+ KK
Sbjct: 594 GAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYKKNGGG-------VEKASGPSTKK--- 643
Query: 649 STAVSPHK-VKSKEFI 663
S+ SP K KSKE I
Sbjct: 644 SSDQSPGKQFKSKEHI 659
>sp|P41848|SSP1A_CAEEL FACT complex subunit SSRP1-A OS=Caenorhabditis elegans GN=hmg-4
PE=3 SV=1
Length = 697
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/640 (40%), Positives = 391/640 (61%), Gaps = 37/640 (5%)
Query: 5 LEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWALRI 64
L+F V E G L G LK+T++++ FK K GK + G D+D + WQKL LR+
Sbjct: 4 LQFPGVYVEDVGHLAFGTLKLTEKSLNFKGDKGGKSVNVTGSDIDKLKWQKLGNKPGLRV 63
Query: 65 FLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVN 124
L +G HRF GFK+T+++KI SF +N+ + + L ++GWN+G + G + F
Sbjct: 64 GLNDGGAHRFGGFKDTDLEKIQSFTSSNWSQSIDQSNLFIKGWNYGQAEVKGKTVEFSWE 123
Query: 125 NTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTN-EIAGDTDPVEAFK 183
+ FEIP +VS KNE +EFH ND++ L+EMRF++P + E D D VE FK
Sbjct: 124 DKPIFEIPCTNVSNVIANKNEAVLEFHQNDDSKVQLMEMRFHMPIDLENEEDADKVEEFK 183
Query: 184 DSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRM 243
+V+ A + T I + +I C TPRGRYDIK++ + LHGKT+DYKIPI ++ R+
Sbjct: 184 KAVLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPIKSINRL 243
Query: 244 FTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKL 303
F +PHKDGR +FV+SL+PPI+QGQTRY +L F +DE ++EL ++++L E G L
Sbjct: 244 FLVPHKDGRHVYFVLSLNPPIRQGQTRYSYLIFEFGKDEEQDLELALTDEQL-ESSNGNL 302
Query: 304 DKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFI 363
++++GP YE ++ + K I N KITVPG F G +GT A+ C+++ G +YP+E+GF+FI
Sbjct: 303 RRDMTGPIYETISILFKSICNLKITVPGRFLGSSGTPAIQCTHRQNPGLLYPMEKGFLFI 362
Query: 364 HKPPIHIRFEEIATVNFAR--SGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIRE 421
HKP ++IRFEEI++ +FAR SG TR+FDFEI+LK G TF+++EKEE KLFD++ +
Sbjct: 363 HKPAMYIRFEEISSCHFARSDSGTVTRTFDFEIDLKYGGPLTFNAMEKEENNKLFDYLNK 422
Query: 422 KKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKREAAER----------------D 465
K ++++N+ + E N D SSDDE +P Y A V E +R D
Sbjct: 423 KNIKIRNSQRVE--NTVAD--SSDDEIDP--YKAAVTAEGRQRDDSDDDSTDEDYDLDKD 476
Query: 466 DEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTIT 525
+ +++ ES++ + E D E DS+ T +S+ DS+ +K++K E K
Sbjct: 477 IKKKKEDKESSEGTGSEPDDEYDSGSEQDSSGT-GESEPDSEQDVPSKRRKGEPKEKR-- 533
Query: 526 ISEKPRKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIA 585
+ K+ +E G +K KD NAPK+ SAYM WF R ++K+D G S ++A
Sbjct: 534 ------EKKEKREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVA 585
Query: 586 KKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESG 625
KKGG WKT+SS +K +++EK + K Y + +K Y+++G
Sbjct: 586 KKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEYRKNG 625
>sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1 OS=Vicia faba GN=SSRP1 PE=2 SV=1
Length = 642
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 234/641 (36%), Positives = 348/641 (54%), Gaps = 34/641 (5%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
MT+ F ++ RG PG++KI I++K + GK ++ D+ V W K+ T
Sbjct: 1 MTDGHLFNNITLGXRGGTNPGQIKIYSGGILWKRQGGGKTIDVDKTDIMGVTWMKVPKTN 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L + +K+G L++F GF++ ++ + +FF+ F I V EK+LSV G NWG GN+L+
Sbjct: 61 QLGVQIKDGLLYKFTGFRDQDVVSLTNFFQNTFGITVEEKQLSVTGRNWGEVDLNGNMLA 120
Query: 121 FDVNNTTAFEIPLRDVSQCTT-GKNEVTVEFHPNDEAA----ESLIEMRFYIPTN--EIA 173
F V + AFE+ L DVSQ GKN+V +EFH +D +SL+EM F+IP++ +
Sbjct: 121 FMVGSKQAFEVSLADVSQTNLQGKNDVILEFHVDDTTGANEKDSLMEMSFHIPSSNTQFV 180
Query: 174 GDTD--PVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTF 231
GD + + F+D +M+ A V DA+ F+ I LTPRGRY +++ SF +L G+
Sbjct: 181 GDENRPSAQVFRDKIMSMADVGVGGEDAVVTFDGIAILTPRGRYSVELHLSFLRLQGQAN 240
Query: 232 DYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFS 291
D+KI S+V+R+F LP + F +ISLDPPI++GQT Y + + F D + EL S
Sbjct: 241 DFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDTVVDSELAIS 300
Query: 292 EQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAG 351
E KY+ KL+ G +EV +++ + K+T PG+FR AV S KA G
Sbjct: 301 EDLYNSKYKDKLELSYKGLIHEVFTTVLRGLSGGKVTKPGNFRSCQDGYAVKSSLKAEDG 360
Query: 352 YIYPLERGFIFIHKPPIHIRFEEIATVNFAR--SGGS-TRSFDFEIELKSGVLHTFSSIE 408
+YPLE+ F F+ KPP I EEI V F R +GGS FD I LKS H F +I+
Sbjct: 361 ILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQ 420
Query: 409 KEEYGKLFDFIREKKLRVKNTGKGEKP-NYKEDFGSSDDEKEPDAYLARVKREAAERDDE 467
+ EY L+ FI K L++ N ++ +DD+ D +L R++ EA D+
Sbjct: 421 RNEYHNLYGFISSKGLKIMNIADAQQAVGGVAKVLENDDDDAVDPHLERIRNEAG-GDES 479
Query: 468 DDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDED-SDASEG---TKKKKKEKSRKT 523
D+ED D D+D D DS D SDAS+ T+K K++ +K
Sbjct: 480 DEEDSDFVIDKD--------------DGGSPTDDSGADVSDASQSGGETEKPAKKEPKKD 525
Query: 524 ITISEKPRKSKKDKESSGG--STKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISF 581
++ K K G ++KKKD NAPK+ +S +M + RE +KK NPGISF
Sbjct: 526 LSSKASSSKKKSKDADVDGVKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISF 585
Query: 582 TEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622
T++ + GE WK +S++EK Y+ K K+ Y + + YK
Sbjct: 586 TDVGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEISGYK 626
>sp|Q05153|SSRP1_ARATH FACT complex subunit SSRP1 OS=Arabidopsis thaliana GN=SSRP1 PE=1
SV=2
Length = 646
Score = 348 bits (893), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 233/644 (36%), Positives = 349/644 (54%), Gaps = 36/644 (5%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M + F +S RG PG LKI I +K + GK +++ D+ V+W K+ +
Sbjct: 1 MADGHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSN 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L + K+G ++F GF++ ++ + SFF++++ EK+LSV G NWG GN L+
Sbjct: 61 QLGVKTKDGLYYKFVGFRDQDVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLT 120
Query: 121 FDVNNTTAFEIPLRDVSQCTT-GKNEVTVEFHPNDEAA----ESLIEMRFYIPTN--EIA 173
F V + AFE+ L DVSQ GKN+VT+EFH +D A +SL+E+ F+IP + +
Sbjct: 121 FLVGSKQAFEVSLADVSQTQLQGKNDVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQFV 180
Query: 174 GDTD--PVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTF 231
GD + P + F D+++ A V DA+ F I LTPRGRY++++ SF +L G+
Sbjct: 181 GDENRPPSQVFNDTIVAMADVSPGVEDAVVTFESIAILTPRGRYNVELHLSFLRLQGQAN 240
Query: 232 DYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFS 291
D+KI S+V+R+F LP + F VISLDPPI++GQT Y + + F D E EL S
Sbjct: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTMYPHIVMQFETDTVVESELSIS 300
Query: 292 EQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAG 351
++ + K++ KL++ G +EV +++ + KIT PG FR AV S KA G
Sbjct: 301 DELMNTKFKDKLERSYKGLIHEVFTTVLRWLSGAKITKPGKFRSSQDGFAVKSSLKAEDG 360
Query: 352 YIYPLERGFIFIHKPPIHIRFEEIATVNFAR---SGGSTRSFDFEIELKSGVLHTFSSIE 408
+YPLE+GF F+ KPP I +EI V F R G + FD I LK+ H F +I+
Sbjct: 361 VLYPLEKGFFFLPKPPTLILHDEIDYVEFERHAAGGANMHYFDLLIRLKTDHEHLFRNIQ 420
Query: 409 KEEYGKLFDFIREKKLRVKNT-GKGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDE 467
+ EY L+ FI K L++ N G G G +DD+ D +L R++ +AA+ DE
Sbjct: 421 RNEYHNLYTFISSKGLKIMNLGGAGTADGVAAVLGDNDDDDAVDPHLTRIRNQAADESDE 480
Query: 468 DDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRK----- 522
+DED D+D +PT +DSDASEG + KEKS K
Sbjct: 481 EDEDFVMGEDDD--------------GGSPTDDSGGDDSDASEGGVGEIKEKSIKKEPKK 526
Query: 523 ----TITISEKPRKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPG 578
+ + K + D+ SS +KKKD NAPK+ MS +M + R+ IKK++PG
Sbjct: 527 EASSSKGLPPKRKTVAADEGSSKRKKPKKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPG 586
Query: 579 ISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622
I+F E+ K G+ W+ +S+ +K Y+ K K+ Y + + YK
Sbjct: 587 IAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYK 630
>sp|Q9LGR0|SSP1A_ORYSJ FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica
GN=SSRP1-A PE=2 SV=1
Length = 641
Score = 344 bits (882), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 226/651 (34%), Positives = 352/651 (54%), Gaps = 35/651 (5%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
MT+ F + R PG+ K+ + +K + GK +I DL V W K+ +
Sbjct: 1 MTDGHLFNNILLGGRAGSNPGQFKVYSGGLAWKRQGGGKTIEIEKSDLTSVTWMKVPRAY 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L + K+G ++F GF+E ++ + +F + N + EK+LSV G NWGG GN+L+
Sbjct: 61 QLGVRTKDGLFYKFIGFREQDVSSLTNFMQKNMGLSPDEKQLSVSGQNWGGIDINGNMLT 120
Query: 121 FDVNNTTAFEIPLRDVSQCTT-GKNEVTVEFHPNDEAA----ESLIEMRFYIPTN--EIA 173
F V + AFE+ L DVSQ GK +V +EFH +D +SL+++ F++PT+ +
Sbjct: 121 FMVGSKQAFEVSLADVSQTQMQGKTDVLLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFL 180
Query: 174 GDTD--PVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTF 231
GD + + +++M A V +++ +A+ F I LTPRGRY +++ SF +L G+
Sbjct: 181 GDENRTAAQVLWETIMGVADV-DSSEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 239
Query: 232 DYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFS 291
D+KI S+++R+F LP + F V++LDPPI++GQT Y + + F + E L +
Sbjct: 240 DFKIQYSSIVRLFLLPKSNNPHTFVVVTLDPPIRKGQTLYPHIVIQFETEAVVERNLALT 299
Query: 292 EQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAG 351
++ L EKY+ +L++ G +EV K+++ + K+T PGSFR AV S KA G
Sbjct: 300 KEVLAEKYKDRLEESYKGLIHEVFTKVLRGLSGAKVTRPGSFRSCQDGYAVKSSLKAEDG 359
Query: 352 YIYPLERGFIFIHKPPIHIRFEEIATVNFARSGG-----STRSFDFEIELKSGVLHTFSS 406
+YPLE+GF F+ KPP I EEI V F R G S+ FD ++LK+ H F +
Sbjct: 360 LLYPLEKGFFFLPKPPTLILHEEIEFVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRN 419
Query: 407 IEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSD-DEKEPDAYLARVKREAAERD 465
I++ EY LF+FI K L++ N G G+ D D+ D +L R+K +A +
Sbjct: 420 IQRSEYHNLFNFINGKHLKIMNLGDGQGATGGVTAVLRDTDDDAVDPHLERIKNQAGDE- 478
Query: 466 DEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTIT 525
E + DEDF D+ +S +PT EDSDASE +K+K S+K +
Sbjct: 479 ------ESDEEDEDFVADKDDS-------GSPTDDSGGEDSDASESGGEKEK-LSKKEAS 524
Query: 526 ISEKPRKSK---KDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFT 582
S+ P K K +D+E S +KKKD NAPK+ M+ +M + R +K +NP + T
Sbjct: 525 SSKPPVKRKPKGRDEEGSDKRKPKKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTT 584
Query: 583 EIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDG 633
EIAKK GE+W+ ++ +EK Y ++ K+ Y + Y+ D D G
Sbjct: 585 EIAKKLGEMWQKMTGEEKQPYIQQSQVDKKRYEKESAVYR-GAAAMDVDSG 634
>sp|Q39601|SSRP1_CATRO FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2
SV=1
Length = 639
Score = 338 bits (868), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 218/642 (33%), Positives = 335/642 (52%), Gaps = 39/642 (6%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M + F ++ RG PG+L++ I++K + K +++ D+ + W K+ +
Sbjct: 1 MADGHLFNNITLGGRGGTNPGQLRVHSGGILWKKQGGAKAVEVDKSDMVGLTWMKVPRSN 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L + +K+G ++F GF++ ++ + S+ ++ I EK+LSV G NWG GN+L+
Sbjct: 61 QLGVRIKDGLFYKFTGFRDQDVASLTSYLQSTCGITPEEKQLSVSGKNWGEVDLNGNMLT 120
Query: 121 FDVNNTTAFEIPLRDVSQCTT-GKNEVTVEFH----PNDEAAESLIEMRFYIPTN--EIA 173
F V + AFE+ L DV+Q GKN+V +EF SL+E+ F++P + +
Sbjct: 121 FLVGSKQAFEVSLADVAQTQLQGKNDVMLEFMWMILLEQMRKNSLMEISFHVPNSNTQFV 180
Query: 174 GDTD--PVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTF 231
GD + P + F+D +M+ A V DA+ F I LTPRGRY++++ SF +L G+
Sbjct: 181 GDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYNVELHLSFLRLQGQAN 240
Query: 232 DYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFS 291
D+KI S+V+R+F LP + F V++LDPPI++GQT Y + L F D + L S
Sbjct: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVDSSLSIS 300
Query: 292 EQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAG 351
E L KY+ KL+ G +EV I++ + K+T PG FR AV S KA G
Sbjct: 301 EDLLSTKYKDKLEPTYKGLIHEVFTMILRGLSGAKVTRPGKFRSCQDGYAVKSSLKAEDG 360
Query: 352 YIYPLERGFIFIHKPPIHIRFEEIATVNFAR--SGGS-TRSFDFEIELKSGVLHTFSSIE 408
+YPLE+ F F+ KPP I EEI V F R +GGS FD I LK+ H F +I+
Sbjct: 361 VLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQ 420
Query: 409 KEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDE- 467
+ EY LFDFI K L++ N G + + DD+ D +L R+K EA + +
Sbjct: 421 RNEYHNLFDFISSKGLKIMNLGADKAADAITAVLQEDDDDAVDPHLERIKNEAGGDESDE 480
Query: 468 -------DDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKS 520
D +DE TD+ + ESD SD ++ KK KKE S
Sbjct: 481 EDEDFVADIDDEGSPTDDS---GEGESD------------GSDSGNEEIPTKKKPKKEAS 525
Query: 521 RKTITISEKPRKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGIS 580
+ +S RK D ++ ++KKKD NAPK +SA+M + RE +KKDNPGI+
Sbjct: 526 APKVPLS---RKKVGDDDNMKKKKQKKKKDPNAPKS-ISAFMFFSQTERENVKKDNPGIA 581
Query: 581 FTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622
FT++ K G+ ++K +++ K+ Y + + YK
Sbjct: 582 FTDVGKVLGDRCNKCQLRKKHLLKQRLVADKKRYTDEISNYK 623
>sp|Q65WY8|SSP1B_ORYSJ FACT complex subunit SSRP1-B OS=Oryza sativa subsp. japonica
GN=SSRP1-B PE=2 SV=1
Length = 640
Score = 337 bits (865), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 227/658 (34%), Positives = 361/658 (54%), Gaps = 41/658 (6%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
MT+ F +S RG PG+ K+ + +K + GK ++ D+ V W + ++
Sbjct: 1 MTDGHHFNNISLGGRGGNNPGQFKLYSGGLAWKRQGGGKTIEVEKSDITSVTWMAIPRSY 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L + K G +RF GF+E +I + +F + N +I EK+LSV G NWGG + GN+LS
Sbjct: 61 QLGVSTKEGLFYRFFGFREQDISSLTNFMEKNMRITPEEKQLSVGGHNWGGIEINGNMLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTT-GKNEVTVEFHPNDEAA----ESLIEMRFYIPTN--EIA 173
F+V + AFE+ L DV+Q GK +V +EFH +D +SL+++ F++PT+ +
Sbjct: 121 FNVGSKEAFEVSLADVAQTQMQGKTDVVLEFHVDDTTGGNEKDSLMDLSFHVPTSNTQFP 180
Query: 174 GDTD--PVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTF 231
GD + + +++N+A V ++ +A+ F+ I LTPRGRY +++ SF +L G+
Sbjct: 181 GDENRPSAQVLWQAILNKADV-GSSEEAVVTFDGIAILTPRGRYSVELHLSFLRLQGQAN 239
Query: 232 DYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFS 291
D+KI S++LR+F LP + F VI+LDPPI++GQT Y + + F + + +L S
Sbjct: 240 DFKIQYSSILRLFVLPKSNNPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVVQRDLTLS 299
Query: 292 EQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAG 351
++ L EKY+ +L+ G +EV +K+++ + K+T P +FR AV S KA G
Sbjct: 300 DEVLAEKYKDRLENSYQGLIHEVFSKVLRGLSGAKVTRPSTFRSCQDGYAVKSSLKAEDG 359
Query: 352 YIYPLERGFIFIHKPPIHIRFEEIATVNFARSGG-----STRSFDFEIELKSGVLHTFSS 406
+YPLE+GF F+ KPP I EEI V F R G S+ FD ++LK+ H F +
Sbjct: 360 LLYPLEKGFFFLPKPPTLILHEEIEYVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRN 419
Query: 407 IEKEEYGKLFDFIREKKLRVKNTG--KGEKPNYKEDFGSSDDEKEPDAYLARVKREAAER 464
I++ EY LF+FI K L++ N G +G S+DD+ D +L R++ +
Sbjct: 420 IQRNEYHNLFNFISGKHLKILNLGEAQGRAGGVTAVLQSTDDDA-VDPHLERIRNQ---- 474
Query: 465 DDEDDEDEDESTDEDFNPDQAESDVAEEYDS-NPTPTDSDEDSDASEGTKKKKKEKSRKT 523
T +D + ++ E VA++ DS +PT +E SDAS + +K++ S+K
Sbjct: 475 -----------TGDDESDEEDEDFVADKDDSGSPTDDSGEEGSDASL-SGGEKEKSSKKE 522
Query: 524 ITISEKPRKSKKDK-----ESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPG 578
+ S+ P K +K K E S +KKKD NAPK+ ++ +M + R +K NP
Sbjct: 523 ASSSKAPLKKRKPKGGDAAEGSEKRKPKKKKDPNAPKRAIAPFMYFSKAERANLKNSNPE 582
Query: 579 ISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTS 636
++ TEIAKK GE W+ ++++EK Y E+ K+ Y E AY+ D D G S
Sbjct: 583 LATTEIAKKLGERWQKMTAEEKQPYVEQSQVDKKRYAEESAAYR-GAAAMDVDSGPAS 639
>sp|Q9LEF5|SSRP1_MAIZE FACT complex subunit SSRP1 OS=Zea mays GN=SSRP1 PE=1 SV=1
Length = 639
Score = 333 bits (853), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 218/641 (34%), Positives = 345/641 (53%), Gaps = 35/641 (5%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
MT+ F + RG PG+ K+ + +K + GK +I+ D+ V W K+ +
Sbjct: 1 MTDGHHFNNILLGGRGGTNPGQFKVHSGGLAWKRQGGGKTIEIDKADVTAVTWMKVPRAY 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L + +K G +RF GF+E ++ + +F + N + EK+LSV G NWGG GN+L+
Sbjct: 61 QLGVRIKAGLFYRFIGFREQDVSNLTNFIQKNMGVTPDEKQLSVSGQNWGGIDIDGNMLT 120
Query: 121 FDVNNTTAFEIPLRDVSQCTT-GKNEVTVEFHPNDEAA----ESLIEMRFYIPTN--EIA 173
F V + AFE+ L DV+Q GK +V +E H +D +SL+++ F++PT+ +
Sbjct: 121 FMVGSKQAFEVSLPDVAQTQMQGKTDVLLELHVDDTTGANEKDSLMDLSFHVPTSNTQFV 180
Query: 174 GDTD--PVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTF 231
GD P ++++ A V ++ + + F I LTPRGRY +++ SF +L G+
Sbjct: 181 GDESRPPAHILWETILKFADV-GSSEEPVVTFEGIAILTPRGRYSVELHLSFLRLQGQAN 239
Query: 232 DYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFS 291
D+KI S+++R+F LP + F VI+LDPPI++GQT Y + + F + E +L S
Sbjct: 240 DFKIQYSSIVRLFLLPKSNNPHTFVVITLDPPIRKGQTLYPHIVIQFETEAVVERDLALS 299
Query: 292 EQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAG 351
++ L EKY+ +L++ G +EV K+++ + K+T PGSFR AV S KA G
Sbjct: 300 KELLVEKYKDRLEESYKGLIHEVFTKVLRGLSGAKVTRPGSFRSCQDGYAVKSSLKAEDG 359
Query: 352 YIYPLERGFIFIHKPPIHIRFEEIATVNFARSGG-----STRSFDFEIELKSGVLHTFSS 406
+YPLE+GF F+ KPP I EEI V F R G S+ FD ++LK+ H F +
Sbjct: 360 LLYPLEKGFFFLPKPPTLILHEEIEFVEFERHGAGGASISSHYFDLLVKLKNDQEHLFRN 419
Query: 407 IEKEEYGKLFDFIREKKLRVKNT---GKGEKPNYKEDFGSSDDEKEPDAYLARVKREAAE 463
I++ EY LF+FI K +++ N G+G + +DD+ D +L R+K +A +
Sbjct: 420 IQRNEYHNLFNFINGKNIKIMNLGGDGQGASGVVTDVLRDTDDDA-VDPHLERIKNQAGD 478
Query: 464 RDDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASE--GTKKKKKEKSR 521
E + DEDF D+ +S +PT DE+SDAS+ G K+K +K
Sbjct: 479 E-------ESDEEDEDFVADKDDS-------GSPTDDSGDEESDASDSGGEKEKSSKKEA 524
Query: 522 KTITISEKPRKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISF 581
+ +K + +D E +KKKD NAPK+ M+ +M + R +K NP +
Sbjct: 525 SSSKPVQKRKHKARDDEGQEKKKPKKKKDPNAPKRAMTPFMYFSMAERGNMKSSNPDLPT 584
Query: 582 TEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622
TEIAKK GE+W+ +S +EK Y ++ K+ Y + Y+
Sbjct: 585 TEIAKKLGEMWQKMSGEEKQPYIQQAQVDKKRYEKESAVYR 625
>sp|O94529|POB3_SCHPO FACT complex subunit pob3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=pob3 PE=3 SV=1
Length = 512
Score = 313 bits (803), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 183/512 (35%), Positives = 280/512 (54%), Gaps = 36/512 (7%)
Query: 20 PGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKE 79
PGKL+I + +K+ + + ++ W + + L+I LK+ GF +
Sbjct: 19 PGKLRIAPSGLGWKSPSLAEPFTLPISEIRRFCWSRFARGYELKIILKSKDPVSLDGFSQ 78
Query: 80 TEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQC 139
++D + + K NF + + +KE S++GWNWG F+G+ L FDVN+ AFEIP+ V+
Sbjct: 79 EDLDDLINVIKQNFDMGIEQKEFSIKGWNWGEANFLGSELVFDVNSRPAFEIPISAVTNT 138
Query: 140 -TTGKNEVTVEFHPNDE------AAESLIEMRFYIP---TNEIAGDTDPVE-----AFKD 184
+GKNEV +EF D+ + L+EMR Y+P E A D + VE F +
Sbjct: 139 NLSGKNEVALEFSTTDDKQIPSAQVDELVEMRLYVPGTTAKEDAADGEEVEQNAANLFYE 198
Query: 185 SVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMF 244
S+ +A + A GDAI F+EI LTPRGRYDI ++ + +L GKT+DYK+ S++ +F
Sbjct: 199 SLKERADIGQAAGDAIVSFSEILLLTPRGRYDIDMYETCMRLRGKTYDYKVEYSSINSLF 258
Query: 245 TLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLD 304
LP D + FVI L+PP++QGQTRY FL F +DE E++L E LKEKY K+
Sbjct: 259 LLPKPDEQHVVFVIGLEPPLRQGQTRYPFLVTQFVRDEDMEVDLNIEETVLKEKYADKVK 318
Query: 305 KELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIH 364
P +EV+++I + + RK+T P F H G +AV CSYKA G +Y L++ F+FI
Sbjct: 319 ASYDQPAFEVVSQIFRGLTGRKVTTPAEFLSHEGHAAVKCSYKANEGQLYCLDKSFLFIP 378
Query: 365 KPPIHIRFEEIATVNFARSGGST---RSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIRE 421
KP + + +I V +R G S R+FD L+SG + FS+I + E L F+
Sbjct: 379 KPTLLMNTSDITRVTLSRVGMSVSAARTFDLTFTLRSGTSYQFSNINRVEQSALVAFLES 438
Query: 422 KKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDEDDEDEDESTDEDFN 481
K++++ N D E L + + + +++ +E S DEDF
Sbjct: 439 KQIKIHN----------------DLADETQQTLLTSALDDEDEEGDEEMEEALSEDEDFQ 482
Query: 482 PDQAESDVAEEYDSNPTPTDSDEDSDASEGTK 513
++ESDVAEEYD N +D +E + +EG++
Sbjct: 483 A-ESESDVAEEYDENAESSD-EEGASGAEGSE 512
>sp|Q54G78|SSRP1_DICDI FACT complex subunit SSRP1 OS=Dictyostelium discoideum GN=ssrp1
PE=3 SV=1
Length = 527
Score = 306 bits (783), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 167/466 (35%), Positives = 271/466 (58%), Gaps = 45/466 (9%)
Query: 6 EFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVG-TWALRI 64
+F +S R + G LK T NI +K++ GK+E ++ D+ NW ++ + L +
Sbjct: 10 QFNNISLGGRISGTRGILKFTTNNITWKSEN-GKIETVSSSDIKRANWARVTPRIFQLIL 68
Query: 65 FLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEK-ELSVRGWNWGGTKFIGNVLSFDV 123
+K G+ +F GFKE + + + + + + E ELS +G NWG K G ++ F
Sbjct: 69 SIKGGATVKFDGFKEQDYEVVRKYLSDQYNVSPLEIIELSSKGCNWGEVKVNGPMIQFTT 128
Query: 124 NNT-TAFEIPLRDVSQCTTG---KNEVTVEFHPN---DEAAESLIEMRFYIPTN------ 170
++ FE P+ +VSQ G KNE+T+EFH + D+ E+++EMRF+ P
Sbjct: 129 DHGKVGFEFPISEVSQSVIGANNKNELTLEFHHDKAMDDDDETMVEMRFFTPIRPSKEGE 188
Query: 171 ----------------------EIAGDTDPVEAFKDSVMNQASVINATGDAIAVFNEIQC 208
E + +E F+ ++MN++ +++ G ++ VF+ IQ
Sbjct: 189 EGGKEKKVGEDGEEDEEDEEDAEKEEEISALEQFQQTIMNKSDMVSNVGKSLVVFSAIQF 248
Query: 209 LTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQ 268
LTPRGR DI+++ +F +LHGKT DYK+P ++ R+F D + FF+ISLDPPI+QGQ
Sbjct: 249 LTPRGRIDIEMYPTFLKLHGKTHDYKVPYESISRLFQFFRPDQKHIFFIISLDPPIRQGQ 308
Query: 269 TRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKIT 328
T+Y L + F +E +EL ++ EL++K++ +L ++G ++ KI+K + +KIT
Sbjct: 309 TKYAHLVIQFQAEENIHLELNLTD-ELQQKFKDQLSPIMNGNANALICKILKALTGKKIT 367
Query: 329 VPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFAR------ 382
+PG+F+ +G +++ CS KA GY+YPLER F F+HKPP +I+FE+I+ + FAR
Sbjct: 368 IPGNFQSDSGANSIKCSLKANEGYLYPLERCFFFVHKPPTYIKFEDISNIEFARYGAPSV 427
Query: 383 SGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIREKKLRVKN 428
GGS R+FD I LK+ F +I++EEY LF+F++EKKL + N
Sbjct: 428 RGGSNRTFDLSINLKNSTSIQFVNIQREEYPSLFNFLKEKKLSILN 473
>sp|Q6FKI2|POB3_CANGA FACT complex subunit POB3 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=POB3 PE=3
SV=1
Length = 543
Score = 303 bits (777), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 184/523 (35%), Positives = 281/523 (53%), Gaps = 70/523 (13%)
Query: 21 GKLKITDQNIVFKNKKTG--KVEQINGP------DLDFVNWQKLVGTWALRIFLKNGSLH 72
G+ +I D + +K +G Q P +L V W + + L+I KN +
Sbjct: 17 GRFRIADSGLGWKVSTSGGSASAQNKAPFLLPATELSTVQWSRGCRGFELKINTKNQGVI 76
Query: 73 RFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIP 132
+ GF E + + I F F I V KE S+RGWNWG T N + F +N FEIP
Sbjct: 77 QLEGFSEDDFNIIKGDFHRRFSIQVEHKEHSLRGWNWGQTDLARNEMVFALNGKPVFEIP 136
Query: 133 LRDVSQCT-TGKNEVTVEFHPNDE----AAESLIEMRFYIPTNEIAGDTDPV-------- 179
++ T KNEV VEF+ D+ A + ++EMRFY+P + + + P
Sbjct: 137 YARINNTNLTAKNEVAVEFNIQDDTYQPAGDEMVEMRFYLPGSVVVDEDQPAPKKEGEEE 196
Query: 180 -------------EAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQL 226
EAF + + N+A + GDAI F ++ TPRGRYDI I+ + +L
Sbjct: 197 GEEAAETETKSLAEAFYEELKNKADIGEIAGDAIVSFQDVFFTTPRGRYDIDIYENSIRL 256
Query: 227 HGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEM 286
GKT++YK+ + + R+ +LP D + V+++DPP++QGQT Y FL L F +DE +E+
Sbjct: 257 RGKTYEYKLQHNQIQRIVSLPKADDINHLVVLAMDPPLRQGQTTYPFLVLQFQKDEETEV 316
Query: 287 ELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSY 346
+L S+QE +EKY+ KL K+ T+ V++ ++K + R++ VPG ++ AV+CSY
Sbjct: 317 QLNLSDQEYEEKYKDKLKKQYDSKTHIVISHVLKGLTGRRVVVPGEYKSKYEQCAVSCSY 376
Query: 347 KAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARSG---GSTRSFDFEIELKSGVLHT 403
KA GY+YPL+ F F+ KP ++I F ++++V +R+G S+R+FD E+ L+S T
Sbjct: 377 KANEGYLYPLDNAFFFLTKPTLYIPFNDVSSVVISRAGQTSTSSRTFDLEVILRSNRGST 436
Query: 404 -FSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKREAA 462
F +I KEE L +F++ K LRVKN +EK+ A+V+ ++A
Sbjct: 437 IFGNISKEEQQLLENFLKSKNLRVKN-----------------EEKD-----AQVRLQSA 474
Query: 463 ERDDEDDED--------EDESTDEDFNPDQAESD--VAEEYDS 495
D DDED +DES DEDF+ + D VAEE+DS
Sbjct: 475 LGSDSDDEDVNMGSAGEDDESVDEDFHVSSGDDDDEVAEEFDS 517
>sp|Q04636|POB3_YEAST FACT complex subunit POB3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=POB3 PE=1 SV=1
Length = 552
Score = 298 bits (762), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 182/550 (33%), Positives = 289/550 (52%), Gaps = 66/550 (12%)
Query: 21 GKLKITDQNIVFKNKKTG--KVEQINGP------DLDFVNWQKLVGTWALRIFLKNGSLH 72
G+ +I D + +K +G Q P +L V W + + L+I KN +
Sbjct: 17 GRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGCRGYDLKINTKNQGVI 76
Query: 73 RFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIP 132
+ GF + + + I + F F I V ++E S+RGWNWG T N + F +N FEIP
Sbjct: 77 QLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRGWNWGKTDLARNEMVFALNGKPTFEIP 136
Query: 133 LRDVSQCT-TGKNEVTVEFHPNDE----AAESLIEMRFYIP-----------------TN 170
++ T KNEV +EF+ DE A + L+EMRFYIP +N
Sbjct: 137 YARINNTNLTSKNEVGIEFNIQDEEYQPAGDELVEMRFYIPGVIQTNVDENMTKKEESSN 196
Query: 171 EIAG----------------DTDPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGR 214
E+ + EAF + + +A + GDAI F ++ TPRGR
Sbjct: 197 EVVPKKEDGAEGEDVQMAVEEKSMAEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGR 256
Query: 215 YDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFL 274
YDI I+ + +L GKT++YK+ + R+ +LP D + V++++PP++QGQT Y FL
Sbjct: 257 YDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHLLVLAIEPPLRQGQTTYPFL 316
Query: 275 TLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFR 334
L F +DE +E++L +++ +E Y+ KL K+ T+ V++ ++K + +R++ VPG ++
Sbjct: 317 VLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYK 376
Query: 335 GHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARSG---GSTRSFD 391
AV+CS+KA GY+YPL+ F F+ KP ++I F +++ VN +R+G S+R+FD
Sbjct: 377 SKYDQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFD 436
Query: 392 FEIELKSGV-LHTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEP 450
E+ L+S TF++I KEE L F++ K LRVKN + + + GS DE++
Sbjct: 437 LEVVLRSNRGSTTFANISKEEQQLLEQFLKSKNLRVKNEDREVQERLQTALGSDSDEED- 495
Query: 451 DAYLARVKREAAERDDEDDEDEDESTDEDF--NPDQAESDVAEEYDSNPTPTDSDEDSDA 508
+ +A D DES DEDF + D +VAEE+DS+ +D++ SD
Sbjct: 496 ------INMGSAGED-------DESVDEDFQVSSDNDADEVAEEFDSDAALSDAEGGSDE 542
Query: 509 SEGTKKKKKE 518
+KK K E
Sbjct: 543 ERPSKKPKVE 552
>sp|Q5ALL8|POB3_CANAL FACT complex subunit POB3 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=POB3 PE=3 SV=1
Length = 538
Score = 296 bits (757), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 186/537 (34%), Positives = 303/537 (56%), Gaps = 53/537 (9%)
Query: 21 GKLKITDQNIVFK-NKKTGKVEQ---INGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAG 76
G+++I + + +K + +G Q + ++ +W + + LR+ KN + G
Sbjct: 18 GRMRIAESGLGWKASASSGSTSQPFLLPREEILIASWSRGSKGYELRVQTKNKGVVSLDG 77
Query: 77 FKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDV 136
F + ++ NF I++ +E S+RGWNWG T N L F+VNN AFEIP D+
Sbjct: 78 FDHDDFTQLKQELTRNFHINLEHREHSLRGWNWGKTDLARNELIFNVNNKPAFEIPYSDI 137
Query: 137 SQCT-TGKNEVTVEFHP-NDEAAESLIEMRFYIPT----------NEIAGD--------- 175
S TGKNEV +EF+ N++ + ++EMRFY+P NE GD
Sbjct: 138 SNSNLTGKNEVALEFNLDNNKNGDEIVEMRFYVPGTIENETTIVKNETNGDVIEEAVVNE 197
Query: 176 TDPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKI 235
T + F + + ++A + G+AI F+++ LTPRGRYDI ++ S +L GKT+DYKI
Sbjct: 198 TSAAQQFYEQLKDKADIGQVAGEAIVSFSDVLFLTPRGRYDIDMYPSSLRLRGKTYDYKI 257
Query: 236 PISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQEL 295
+ R+F+LP D + V+ +DPP++QGQTRY FL L F +DE +E+EL S+++
Sbjct: 258 QYEQIERIFSLPKPDETHHLIVLQIDPPLRQGQTRYPFLVLQFVKDEETELELNVSDEDF 317
Query: 296 KEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYP 355
++KY+ +L K PT VM+ ++ + RK+ PG+F+ + V CS KA+ GY++P
Sbjct: 318 EKKYKDRLKKTYDAPTNVVMSHCLRGLTERKLITPGAFQSRYLQAGVPCSVKASEGYLFP 377
Query: 356 LERGFIFIHKPPIHIRFEEIATVNFARSGG---STRSFDFEIE-LKSGVLHTFSSIEKEE 411
L+R F+F+ KP ++I + EI++V +R+GG ++R+FD E+ + S H FS+I++EE
Sbjct: 378 LDRCFLFVTKPTLYIPYSEISSVVMSRTGGGVSASRTFDLEVNVIGSNQPHVFSNIDREE 437
Query: 412 YGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDEDDED 471
+ F +EK ++VKN +EK A LA+ + A DD++D D
Sbjct: 438 QEFIESFCKEKGVKVKN-----------------EEKIAKARLAKALEQEANDDDDEDAD 480
Query: 472 EDESTDEDFNPDQ-----AESDVAEEYDSNPTPT--DSDEDSDASEGTKKKKKEKSR 521
+ DED + D ++SDVAEE+DS+ P+ D +E +D+ E + K+K++
Sbjct: 481 MGSAGDEDEDEDVDFQSGSDSDVAEEFDSDAAPSSDDDEEMADSKETDDRPPKKKAK 537
>sp|Q6BS60|POB3_DEBHA FACT complex subunit POB3 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=POB3 PE=3 SV=1
Length = 540
Score = 294 bits (753), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 184/540 (34%), Positives = 289/540 (53%), Gaps = 62/540 (11%)
Query: 21 GKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWA-------LRIFLKNGSLHR 73
G+++I D + +K T N + + L W+ LR+ KN +
Sbjct: 18 GRMRIADSGLGWKASVTNNASASNNAPFLLPSEEILASQWSRGSRGYELRVQTKNKGVVM 77
Query: 74 FAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPL 133
GF + + + NF++++ KE S+RGWNWG T N L F VNN FEIP
Sbjct: 78 LDGFDVEDFANLKQELQRNFQVNLEHKEHSLRGWNWGKTDLARNELVFQVNNKPDFEIPY 137
Query: 134 RDVSQCT-TGKNEVTVEFH---PNDEAAESLIEMRFYIPTNEIAGDTDPV---------- 179
++S TGKNEV VEF+ N +A + ++EMRFYIP + +T P
Sbjct: 138 SEISNSNLTGKNEVAVEFNLDGANSKAGDEMVEMRFYIP-GTLENETTPAVKNEENGEVK 196
Query: 180 ----------EAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGK 229
F + + ++A + G+AI F+++ LTPRGRYDI ++ + +L GK
Sbjct: 197 EEETEEISAATVFYEQLKDKADIGQVAGEAIVSFSDVLFLTPRGRYDIDMYPTSLRLRGK 256
Query: 230 TFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELP 289
T+DYKI + + R+F+LP D + VI +DPP++QGQT+Y FL + F ++E E++L
Sbjct: 257 TYDYKIQYNQIERIFSLPKPDEAHHLLVIQIDPPLRQGQTKYPFLVMQFAKEEEIELDLN 316
Query: 290 FSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAA 349
SE+E +KY+ +L K T+ VM+ K + R++ VPGSF+ ++CS KA+
Sbjct: 317 VSEEEYNDKYKDRLKKSYDSQTHLVMSHCFKGLTERRLVVPGSFQSRFLQPGISCSLKAS 376
Query: 350 AGYIYPLERGFIFIHKPPIHIRFEEIATVNFARSGG----STRSFDFEIELK-SGVLHTF 404
GY+YPL+R F+F+ KP ++I F EI+++ +R+G ++R+FD +I L+ S H F
Sbjct: 377 EGYLYPLDRCFLFVTKPTVYIPFSEISSITMSRTGAGGVSTSRTFDMDITLRGSNQSHNF 436
Query: 405 SSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKREAAER 464
SIE+EE + ++ +K LR+KN +EK A LA+ E A+
Sbjct: 437 GSIEREEQETIENYCLQKGLRIKN-----------------EEKLAKAMLAKAMNETADD 479
Query: 465 DDEDDEDEDES-------TDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKK 517
DD+ D D + D+DFN ++SDVAEE+DS+ + +D++ E +KK K
Sbjct: 480 DDDADVDMGSAGDDDDESADDDFNSG-SDSDVAEEFDSDASVSDAEMSDSNQEPPQKKPK 538
>sp|Q6CWD7|POB3_KLULA FACT complex subunit POB3 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=POB3 PE=3 SV=1
Length = 555
Score = 292 bits (747), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 181/549 (32%), Positives = 287/549 (52%), Gaps = 64/549 (11%)
Query: 21 GKLKITDQNIVFKNKKTG--KVEQINGP------DLDFVNWQKLVGTWALRIFLKNGSLH 72
G+ ++ + + +K TG Q N P ++ V W + + L+I KN L
Sbjct: 17 GRFRLAEGGLGWKASATGGSASTQNNEPLLLAADEVSSVQWSRGCRGYELKISTKNKGLI 76
Query: 73 RFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIP 132
+ GF++ + + + + F+ F + + +E S+RGWNWG N + F +N FEIP
Sbjct: 77 QMDGFQQEDFNLLKNDFQRRFNMQLEHREHSLRGWNWGKLDLARNEMVFSLNGKPTFEIP 136
Query: 133 LRDVSQCT-TGKNEVTVEFHPNDEA----AESLIEMRFYIP-TNEIAGDTDPV------- 179
++ T KNE+ +EF +EA + L+EMR Y+P T E D D +
Sbjct: 137 YTHINNTNLTAKNEIALEFDTQNEAYNPAGDELVEMRLYVPGTVEENEDQDQIMVKDEAE 196
Query: 180 ---------------------------EAFKDSVMNQASVINATGDAIAVFNEIQCLTPR 212
E F + + ++A + +GDAI F ++ TPR
Sbjct: 197 AEDGVKSEVKTEEGSEEPDVQEEKTLAEYFYEELRSKADIGEISGDAIISFQDLFFTTPR 256
Query: 213 GRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYH 272
GRYDI I+ + +L GKT++YK+ + R+F+LP D V+S+DPPI+QGQT Y
Sbjct: 257 GRYDIDIYKNSIRLRGKTYEYKLQHRQINRIFSLPKADDIHYLMVLSIDPPIRQGQTSYP 316
Query: 273 FLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGS 332
FL L F +DE +E++L + E ++ Y+ KL K+ T+ V++ ++K + R++ VPG
Sbjct: 317 FLVLQFQKDEETEVQLNVEDDEFEKLYKDKLKKQYDAKTHIVLSHVLKGLTGRRVIVPGE 376
Query: 333 FRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARSG---GSTRS 389
++ AV+CSYK G++YPL+ F+F+ KP ++I F++IA VN +R+G S R+
Sbjct: 377 YKSKYDQCAVSCSYKVNEGHLYPLDNAFLFLTKPTLYIPFQDIAAVNISRAGQTSTSART 436
Query: 390 FDFEIELKSGV-LHTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEK 448
FD E+ +++ TF++I KEE L F+R K LRVKN K + + FGS D+
Sbjct: 437 FDLEVVMRANRGTTTFANISKEEQQLLETFLRSKNLRVKNEDKEAEQRLQTAFGSDSDDD 496
Query: 449 EPDAYLARVKREAAERDDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDA 508
+ D + EDE ES DEDF+ + DVAEE+DS + +DS+ ++
Sbjct: 497 DVDINMGSA-----------GEDE-ESVDEDFHASDEDDDVAEEFDSEASASDSEGETSK 544
Query: 509 SEGTKKKKK 517
SE KK K
Sbjct: 545 SERPSKKAK 553
>sp|Q4P647|POB3_USTMA FACT complex subunit POB3 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=POB3 PE=3 SV=1
Length = 558
Score = 291 bits (745), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 157/460 (34%), Positives = 242/460 (52%), Gaps = 50/460 (10%)
Query: 19 CPGKLKITDQNIVFK-NKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLK---------- 67
PGKL+++ + +K + G I + W ++ + L I+L
Sbjct: 17 TPGKLRMSQGGLGWKPSVGEGSTITIPADQMASFQWIRVARNYQLAIYLNKDRDAPSSAQ 76
Query: 68 -NGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNT 126
N F GF + D++ S + F + KE+S RGWNWG K + + F V +
Sbjct: 77 TNPRRTNFDGFVRDDFDRLSSHIRQYFNKPLEAKEVSTRGWNWGQAKISNHDVQFLVRDK 136
Query: 127 TAFEIPLRDVSQCTTGKNEVTVEF------HPNDEAAES--------------LIEMRFY 166
AFE+PL ++ K EV++EF P S L+EMR Y
Sbjct: 137 LAFELPLSHLANSNIAKTEVSMEFLNPEQQQPGANTGTSDVNGTKSRRSKGDQLVEMRLY 196
Query: 167 IPTNEI---------AGDTD------PVEAFKDSVMNQASVINATGDAIAVFNEIQCLTP 211
+P I A D D EAF +++ ++A + GD+I VF E+ LTP
Sbjct: 197 VPGQAIKDDGSDAASAQDDDVNNEETAAEAFHEALKSKADIGQVAGDSIVVFKEVLVLTP 256
Query: 212 RGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRY 271
RGRYDI +F++F +L GKT+DYKI S++ ++F LP D VI LDPPI+QGQTRY
Sbjct: 257 RGRYDIDVFSTFIRLRGKTYDYKILYSSMNKLFLLPKADEIHVMLVIGLDPPIRQGQTRY 316
Query: 272 HFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPG 331
+L L F ++E + EL EQ ++EKY+GKL K PT+ ++ I KV+ +K+ P
Sbjct: 317 PYLVLQFPREEEMDAELNLDEQTIQEKYDGKLKKRYEEPTFRIVTNIFKVLSGQKVATPT 376
Query: 332 SFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARSGG---STR 388
F +G +++ C+ KAA G +YPLE+ +++ K P+++ + EI +R GG S++
Sbjct: 377 DFESSSGQTSIKCNVKAADGNLYPLEKSLLWVSKQPVYVPYSEIHQAILSRVGGAVASSK 436
Query: 389 SFDFEIELKSGVLHTFSSIEKEEYGKLFDFIREKKLRVKN 428
+FD + KSG HTF SI +EE +L ++ ++K+R+KN
Sbjct: 437 TFDLRVATKSGTEHTFQSISREELDRLKAWLADRKVRIKN 476
>sp|Q756X6|POB3_ASHGO FACT complex subunit POB3 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=POB3 PE=3 SV=1
Length = 542
Score = 287 bits (735), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 175/530 (33%), Positives = 287/530 (54%), Gaps = 53/530 (10%)
Query: 19 CPGKLKITDQNIVFKNKKTG--KVEQINGP------DLDFVNWQKLVGTWALRIFLKNGS 70
G+ ++ + + +K TG Q N P +L V W + + L+I KN
Sbjct: 15 VSGRFRLGEGGLGWKASATGGSAAMQNNEPILLTADELASVQWSRGCRGYELKINTKNKG 74
Query: 71 LHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFE 130
+ + GF + + + + + F + + K+ S+RGWNWG T N L F +N FE
Sbjct: 75 VVQLDGFSQEDFTLLKNDLQRRFNVQLEHKDHSLRGWNWGTTDLTRNELIFSLNGKPTFE 134
Query: 131 IPLRDVSQCT-TGKNEVTVEFHPN----DEAAESLIEMRFYIP---TNE-----IAGDTD 177
IP +S T KNEV +EF + A + L+EMR Y+P T E A D D
Sbjct: 135 IPYSHISNTNLTSKNEVALEFDLQKDGYNPAGDELVEMRLYVPGVVTQEDRHSSPAEDAD 194
Query: 178 P------------VEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQ 225
EAF + + +A + +GDAI F ++ TPRGRYDI I+ + +
Sbjct: 195 VDMEKDNKEEKSIAEAFYEELRAKAEIGEVSGDAIISFQDVFFTTPRGRYDIDIYKNSIR 254
Query: 226 LHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSE 285
L GKT++YK+ + R+F+LP D + V+S++PP++QGQT Y +L L F +DE +E
Sbjct: 255 LRGKTYEYKLQHRQIQRIFSLPKADDIHHLMVLSIEPPLRQGQTTYPYLVLQFQKDEETE 314
Query: 286 MELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCS 345
++L + E + Y+ KL K+ T+ V++ ++K + + ++ VPG ++ AV+CS
Sbjct: 315 VQLNVEDDEFERLYKDKLKKQYDAKTHVVLSHVLKGLTDTRVVVPGEYKSKHEQCAVSCS 374
Query: 346 YKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARSGGST---RSFDFEIELKSGV-L 401
+KA G++YPL+ F+F+ KP ++I F+++++VN +R+G +T R+FD E+ L+S
Sbjct: 375 FKANEGHLYPLDNAFMFLTKPTLYIPFQDVSSVNISRAGQATTSSRTFDLEVVLRSNRGS 434
Query: 402 HTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKREA 461
TF++I KEE L F++ K +RVKN K + + GS D ++ D + A
Sbjct: 435 TTFANISKEEQQILESFLKSKNVRVKNEEKETQQRLQTALGS--DSEDEDVNMG----SA 488
Query: 462 AERDDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEG 511
AE +DES DEDF + + DVAEE+DS+ ++S +++A++G
Sbjct: 489 AE--------DDESVDEDFQAESEDDDVAEEFDSDAGVSES--ETEAADG 528
>sp|Q2USL9|POB3_ASPOR FACT complex subunit pob3 OS=Aspergillus oryzae (strain ATCC 42149
/ RIB 40) GN=pob3 PE=3 SV=1
Length = 576
Score = 283 bits (725), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 178/573 (31%), Positives = 290/573 (50%), Gaps = 71/573 (12%)
Query: 20 PGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKE 79
PGK K+ + + +K G+ ++ ++ W + + L+I ++ + + GF +
Sbjct: 15 PGKCKLAESGLGWKPSGEGETFTLDSSNVGAAQWSRAAKGFELKILSRSSGVIQLDGFDQ 74
Query: 80 TEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQC 139
+ +++ FK + I+V +E ++RGWNWG +F LSF+V N AFE+P ++S
Sbjct: 75 EDFERLSKAFKIWYGINVESREHALRGWNWGKAEFTKAELSFNVQNRPAFEVPYSEISNT 134
Query: 140 T-TGKNEVTVEFHPNDEAAES---------------------LIEMRFYIPTNEIAGD-- 175
GKNEV VE N + A++ L+EMRFYIP + +
Sbjct: 135 NLAGKNEVAVELALNTDGADANAQPAGSTKNRGRKAASGPDELVEMRFYIPGTVMKTEKG 194
Query: 176 -------------------TDPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYD 216
+ F + +M +A + + GD A F ++ LTPRGR+D
Sbjct: 195 IKEENGKEENGEEEEEGEEQNAANLFYEMLMEKAEIGDVAGDTFATFLDVLHLTPRGRFD 254
Query: 217 IKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTL 276
I ++ S F+L GKT+DYKI S++ + F LP D V+ LDPP++QGQTRY FL +
Sbjct: 255 IDMYESSFRLRGKTYDYKIQYSSIKKFFLLPKNDDTHTLIVLGLDPPLRQGQTRYPFLVM 314
Query: 277 LFNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGS-FRG 335
DE +EL +++ ++ +Y+ KL+ P ++V+ KI + + +K+ +P F
Sbjct: 315 QLKLDEEISLELNMTDELMETRYKDKLEPRYEEPIHQVVTKIFRGLSGKKVIMPSKDFVS 374
Query: 336 HTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARSGG---STRSFDF 392
H G S V CS KA G +Y L++ IF+ KP +I+ E IA + +R GG ++R+FD
Sbjct: 375 HHGHSGVKCSIKANEGLLYFLDKSLIFVPKPATYIQVENIAIITMSRVGGAVSASRTFDI 434
Query: 393 EIELKSGVL-HTFSSIEKEEYGKLFDFIREKKLRVKN------TGKGEKPNYKEDFGSSD 445
+ LK+G+ H FS+I +EE L +F + K +R KN + GSSD
Sbjct: 435 TVSLKAGMGEHQFSNINREEQQPLEEFFKAKNIRFKNEMSDDAGALLAAALDNDVMGSSD 494
Query: 446 DEKEPDAYLARVKREAAERDDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDED 505
DE R R +A+ D+E +++ ++ ++ESDVAEEYDS + S D
Sbjct: 495 DEG------VRADRGSADEDEESIDEDFQA--------ESESDVAEEYDSAHESSGSGSD 540
Query: 506 S---DASEGTKKKKKEKSRKTITISEKPRKSKK 535
+ DAS+G + ++ E+P+K K
Sbjct: 541 AEMNDASDGGGDDDDDDEDVDMSEEERPKKKSK 573
>sp|Q5AYE3|POB3_EMENI FACT complex subunit pob3 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pob3 PE=3
SV=2
Length = 575
Score = 283 bits (724), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 181/579 (31%), Positives = 284/579 (49%), Gaps = 82/579 (14%)
Query: 20 PGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKE 79
PGK K+ + + ++ G ++ ++ W + + L+I ++ + + GF +
Sbjct: 15 PGKCKLAETGLGWRPSGGGDTFTLDSSNIGAAQWSRAAKGYELKILSRSSGVIQLDGFDQ 74
Query: 80 TEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQC 139
+ +++ FK + I+V +E ++RGWNWG +F L+F+V N AFE+P ++S
Sbjct: 75 EDFERLSKAFKIWYGINVESREHALRGWNWGKAEFTKAELAFNVQNRPAFEVPYSEISNT 134
Query: 140 T-TGKNEVTVEFH----PNDE---------------AAESLIEMRFYIPT------NEIA 173
GKNEV VE PN + L+EMRFYIP N I
Sbjct: 135 NLAGKNEVAVELSLSVDPNGSKPAGSTKNRGRKAAAGPDELVEMRFYIPGTAVKTENGIK 194
Query: 174 GDT----------------DPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDI 217
G+ + F + +M +A + + GD A F ++ LTPRGR+DI
Sbjct: 195 GENADEKNGGEGEENGEEQNAANLFYELLMEKAEIGDVAGDTFATFLDVLHLTPRGRFDI 254
Query: 218 KIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLL 277
++ S F+L GKT+DYKI S++ + F LP D V+ L+PP++QGQTRY FL +
Sbjct: 255 DMYESSFRLRGKTYDYKIQYSSIKKFFLLPKNDDTHTLIVLGLEPPLRQGQTRYPFLVMQ 314
Query: 278 FNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPG-SFRGH 336
DE +EL +E+ L+ +Y+ KL+ P ++V+ KI + + +K+ +P F H
Sbjct: 315 LKLDEEISLELNMTEELLETRYKDKLEPRYEEPIHQVITKIFRGLSGKKVIMPSKDFVSH 374
Query: 337 TGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARSGG---STRSFDFE 393
G S V CS KA G +Y L++ IF+ KP +I+ E +A V +R GG ++R+FD
Sbjct: 375 HGHSGVKCSIKANEGLLYFLDKSLIFVPKPATYIQMENVAVVTMSRVGGAISASRTFDIT 434
Query: 394 IELKSGVL-HTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDA 452
+ LK+G+ H FS+I +EE L +F + K +R+KN SDD +A
Sbjct: 435 VSLKAGMGEHQFSNINREEQQPLEEFFKAKNIRIKNE-------------MSDD---TNA 478
Query: 453 YLARVKREAAERDDEDDEDEDESTDED--------------FNPDQAESDVAEEYDSNPT 498
+A A + DD DED D F D ++SDVAEEYDS
Sbjct: 479 LIA----AALDNDDMMSSDEDGGGRPDRGSADEDEESVDEDFQAD-SDSDVAEEYDSAHE 533
Query: 499 PTDSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKDK 537
+ S D++ + + E +SE+ R KK K
Sbjct: 534 SSGSGSDAEMDDASDAGVDEDEDADADMSEEERPKKKSK 572
>sp|Q7RWW0|POB3_NEUCR FACT complex subunit pob-3 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=pob-3 PE=3 SV=1
Length = 565
Score = 282 bits (722), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 168/519 (32%), Positives = 273/519 (52%), Gaps = 55/519 (10%)
Query: 21 GKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKET 80
GK + + + +K G+ ++ ++ W + + ++I L++ + + GF +
Sbjct: 19 GKSRFAENGLGWKPAGGGEAFTLDSSNIGGAQWSRAARGYEVKILLRSSGVVQLDGFHQE 78
Query: 81 EIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQCT 140
+ +++ FK + +++ KE S+RGWNWG +F L+F+V N AFEIP ++S
Sbjct: 79 DYERLSKIFKNWYSVNLENKEHSLRGWNWGKAEFSKAELTFNVQNRPAFEIPYSEISNTN 138
Query: 141 -TGKNEVTVEFHPND------------------EAAESLIEMRFYIPT---------NEI 172
G+NE+ VEF ND + L+E+RFYIP E
Sbjct: 139 LAGRNEIAVEFAGNDGGKSNGHSGTGGKGKKASAGKDQLVEVRFYIPGTTTRKEAEGGEA 198
Query: 173 AGDTD-----PVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLH 227
D D V F D+++ +A + GD IA F ++ LTPRGR+DI ++++ F+L
Sbjct: 199 GSDADEEEKNAVTLFYDTLIEKAEIGETAGDTIATFLDVLHLTPRGRFDIDMYDASFRLR 258
Query: 228 GKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEME 287
GKT+DYKI + + LP D I LDPP++QGQTRY F+ + F DE ++
Sbjct: 259 GKTYDYKIQYDAIKKFMVLPKPDDLHFLLCIGLDPPLRQGQTRYPFVVMQFKADEEVTLD 318
Query: 288 LPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPG-SFRGHTGTSAVTCSY 346
L +E+EL KY+ KL P ++V+A I K + N+K+T P F H + CS
Sbjct: 319 LNITEEELNGKYKDKLQSHYEQPLHQVVAYIFKGLANKKVTTPAKDFTTHRQQYGIKCSI 378
Query: 347 KAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARSGGSTRS---FDFEIELKSGVLHT 403
KA+ G++Y LE+ F+F+ KP +I +E+ ++ F+R GG+ + FD + +K+G +
Sbjct: 379 KASEGFLYCLEKAFMFVPKPATYISYEQTQSITFSRVGGAVSALSTFDITVHMKNGAGSS 438
Query: 404 -FSSIEKEEYGKLFDFIREKKLRVKN-----TGKGEKPNYKEDFGSSDDEKEPDAYLARV 457
FS+I +E+ L +F + K LRVKN T +D SSD+E A +
Sbjct: 439 QFSNINREDLKALEEFFKLKGLRVKNEIDDDTNLIAAALGDDDMASSDEE----AVGPKA 494
Query: 458 KREAAERDDEDDEDEDESTDEDFNPDQAESDVAEEYDSN 496
R +A+ D+E +++ ++ ++ESDVAEEYDSN
Sbjct: 495 DRGSADEDEESVDEDFQA--------ESESDVAEEYDSN 525
>sp|Q4WGK6|POB3_ASPFU FACT complex subunit pob3 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pob3 PE=3
SV=2
Length = 573
Score = 281 bits (720), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 169/561 (30%), Positives = 284/561 (50%), Gaps = 53/561 (9%)
Query: 20 PGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKE 79
PGK K+ + + ++ G+ ++ ++ W + + L+I ++ + + GF +
Sbjct: 18 PGKCKLAESGLGWRPSGGGETFTLDSNNIGAAQWSRAAKGYELKILSRSSGVIQLDGFDQ 77
Query: 80 TEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQC 139
+ +++ FK + I+V +E ++RGWNWG +F L+F+V N AFEIP ++S
Sbjct: 78 EDFERLSKAFKIWYGINVENREHALRGWNWGKAEFTKAELAFNVQNRPAFEIPYSEISNT 137
Query: 140 T-TGKNEVTVEFHPNDEA--------------------AESLIEMRFYIPTNEIAGD--- 175
GKNEV VEF + + L+EMRFYIP + +
Sbjct: 138 NLAGKNEVAVEFALTSDGDANAQPSGSTKNRGRKAAAGPDELVEMRFYIPGTAVKTEKGI 197
Query: 176 ----------------TDPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKI 219
+ F +++M +A + + GD A F ++ LTPRGR+DI +
Sbjct: 198 KTENDENGEEEEEGEEQNAANLFYETLMEKAEIGDVAGDTFATFLDVLHLTPRGRFDIDM 257
Query: 220 FNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFN 279
+ S F+L GKT+DYKI +++ + F LP D V+ LDPP++QGQTRY FL +
Sbjct: 258 YESSFRLRGKTYDYKIQYASIKKFFLLPKNDEMHTLIVLGLDPPLRQGQTRYPFLVMQLK 317
Query: 280 QDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPG-SFRGHTG 338
DE +EL +E+ L+ +Y+ KL+ P ++V+ KI + + +K+ +P F H G
Sbjct: 318 LDEEISLELNMTEELLESRYKDKLEPRYEEPIHQVVTKIFRGLSGKKVIMPSKDFVSHHG 377
Query: 339 TSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARSGG---STRSFDFEIE 395
S V CS KA G +Y L++ IF+ KP +++ E IA + +R GG ++R+FD +
Sbjct: 378 HSGVKCSIKANEGLLYFLDKSLIFVPKPATYVQIENIAVITMSRVGGAVSASRTFDITVT 437
Query: 396 LKSGVL-HTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYL 454
LK+G+ H FS+I +EE L +F + K +R KN + +DD D
Sbjct: 438 LKAGMGEHQFSNINREEQQPLEEFFKAKNIRFKNEMSDDTSALIAAALDNDDMMSSDEDG 497
Query: 455 ARVKREAAERDDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKK 514
R R +A+ D+E +++ ++ ++ESDVAEE+DS + S D++ + +
Sbjct: 498 GRADRGSADEDEESVDEDFQA--------ESESDVAEEFDSEHESSGSASDAEMDDASDA 549
Query: 515 KKKEKSRKTITISEKPRKSKK 535
E+ E+P+K K
Sbjct: 550 GDDEEDVDMSEEEERPKKKSK 570
>sp|Q6C7V4|POB3_YARLI FACT complex subunit POB3 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=POB3 PE=3 SV=1
Length = 544
Score = 271 bits (693), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 174/502 (34%), Positives = 258/502 (51%), Gaps = 69/502 (13%)
Query: 53 WQKLVGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGT 112
W + + ++I KN F GF++ ++++ + K N+ I V ++E SV+GWNWG T
Sbjct: 61 WSRGSRGFEMKIQTKNRGAANFDGFEQDNLEELKNVMKRNYGISVEQREHSVKGWNWGKT 120
Query: 113 KFIGNVLSFDVNNTTAFEIPLRDVSQC-TTGKNEVTVEFH-PND-EAAESLIEMRFYIP- 168
F + L F V N AFEIP +V+ GKNEV +EF P D A + L+EMRFY+P
Sbjct: 121 DFERSELVFSVANKPAFEIPYAEVANSNLVGKNEVALEFQQPADGRAGDELVEMRFYVPG 180
Query: 169 TNEIAGDTDP---------------------------------VEAFKDSVMNQASVINA 195
+ GD +P + F D++ +A +
Sbjct: 181 VTSVEGDENPKKKQKTEKEGEEGKEGDDDADADDESEEEVQSTAQIFYDTLKEKADIGAV 240
Query: 196 TGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNF 255
G A+ +EI + PRGRYDI ++ +F +L GKT+DY + V R+ LP D N
Sbjct: 241 AGTAVVSLSEIYLVIPRGRYDIDMYANFMRLRGKTYDYMVQYKHVQRLIVLPKPDDLHNI 300
Query: 256 FVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGK-LDKELSGPTYEV 314
V+ LDPP++QGQTRY FL + F ++ ++EL + E EKY K L + ++V
Sbjct: 301 LVVQLDPPLRQGQTRYPFLVMQFLREAEIKVELNVDDAEFAEKYADKGLKQSYDESAHQV 360
Query: 315 MAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEE 374
+ I + + RK+TVPGSF+ G + V+CS KA+ G++YPLER F+F+ K P+ I F E
Sbjct: 361 VGSIFRGLTGRKLTVPGSFKTVHGHAGVSCSLKASEGHLYPLERNFLFLSK-PVFIPFAE 419
Query: 375 IATVNFARSGGS---TRSFDFEIELKSGVL-HTFSSIEKEEYGKLFDFIREKKLRVKNTG 430
I + +R G S +R+FD ++L++ + FS+I KEE L FI+ K +R+KN
Sbjct: 420 IQDITLSRVGSSVTTSRTFDMTLKLRNAQGEYQFSNISKEEQEGLEAFIKSKGIRLKN-- 477
Query: 431 KGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDEDDEDEDESTDEDFNPD-----QA 485
D E A LA E DD DD E + ++ + A
Sbjct: 478 ---------------DLAEEKALLAATLAEV--DDDSDDGGEFRGSADEDDESPDEDFHA 520
Query: 486 ESD--VAEEYDSNPTPTDSDED 505
ESD VAEE+DSN + +ED
Sbjct: 521 ESDSEVAEEFDSNAESSSGEED 542
>sp|P0CR74|POB3_CRYNJ FACT complex subunit POB3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=POB3 PE=3 SV=1
Length = 588
Score = 263 bits (673), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/443 (33%), Positives = 236/443 (53%), Gaps = 39/443 (8%)
Query: 44 NGPDLDFVNWQKLVGTWALRIFLKNGSLHR--FAGFKETEIDKICSFFKTNFKIDVPEKE 101
NG D+ W ++ + LR+ ++N R F GFK ++DKI + F I + ++
Sbjct: 43 NGSDIRHATWFRVARHFQLRLGMRNSEKPRISFDGFKRDDLDKIKRTLQEYFNITLETRD 102
Query: 102 LSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQC-TTGKNEVTVEFHP-------- 152
S++GWNWG + G+ L F V TAF++PL V+ GK EV +EF+P
Sbjct: 103 TSLKGWNWGEAQVKGSDLVFQVQGKTAFDVPLSQVANSNIAGKYEVALEFNPPSNYKFDP 162
Query: 153 ---NDEAAESLIEMRFYIP-------------------TNEIAGDTDPVEAFKDSVMNQA 190
N + ++EMRFYIP +E + +AF + +A
Sbjct: 163 KDLNKRPPDEMVEMRFYIPGKSMKKAGSDAGSGGEETELDEEGNEVSAADAFHSLIKEKA 222
Query: 191 SVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKD 250
+ GD+I VF + LTPRGR+ I+++ +L GK+ D+++P +++ R+F LP D
Sbjct: 223 DIGAVVGDSIVVFEDCLILTPRGRFSIEVYADSIRLVGKSTDHRVPFTSIHRIFLLPKLD 282
Query: 251 GRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGP 310
V+ LDPPI+QG TRY FL + +DE EL +++EL + + L+K
Sbjct: 283 DLHVQLVLGLDPPIRQGATRYPFLVAQWPKDEVVNAELNLTDEELAQYPD--LEKTYEAT 340
Query: 311 TYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHI 370
T++V+++++K + +K+T PGS R G + + + KA G +Y LE+G IFI K PI I
Sbjct: 341 TFQVVSRVLKALTGKKVTPPGSLRNAQGLNGIRANVKAVQGELYFLEKGLIFISKQPILI 400
Query: 371 RFEEIATVNFARSGG---STRSFDFEIELKSGVL-HTFSSIEKEEYGKLFDFIREKKLRV 426
F + +++F+R GG S R+FD + K+G H FS+I K+E G + F++ K +R+
Sbjct: 401 DFSKTDSISFSRVGGGVASARTFDMRVVSKTGGADHVFSAINKQEVGPISSFLQSKNIRL 460
Query: 427 KNTGKGEKPNYKEDFGSSDDEKE 449
KN + + E F D+E E
Sbjct: 461 KNEMEEAIVDIDEPFSDDDEEME 483
>sp|P0CR75|POB3_CRYNB FACT complex subunit POB3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=POB3 PE=3 SV=1
Length = 588
Score = 263 bits (673), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/443 (33%), Positives = 236/443 (53%), Gaps = 39/443 (8%)
Query: 44 NGPDLDFVNWQKLVGTWALRIFLKNGSLHR--FAGFKETEIDKICSFFKTNFKIDVPEKE 101
NG D+ W ++ + LR+ ++N R F GFK ++DKI + F I + ++
Sbjct: 43 NGSDIRHATWFRVARHFQLRLGMRNSEKPRISFDGFKRDDLDKIKRTLQEYFNITLETRD 102
Query: 102 LSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQC-TTGKNEVTVEFHP-------- 152
S++GWNWG + G+ L F V TAF++PL V+ GK EV +EF+P
Sbjct: 103 TSLKGWNWGEAQVKGSDLVFQVQGKTAFDVPLSQVANSNIAGKYEVALEFNPPSNYKFDP 162
Query: 153 ---NDEAAESLIEMRFYIP-------------------TNEIAGDTDPVEAFKDSVMNQA 190
N + ++EMRFYIP +E + +AF + +A
Sbjct: 163 KDLNKRPPDEMVEMRFYIPGKSMKKAGSDAGSGGEETELDEEGNEVSAADAFHSLIKEKA 222
Query: 191 SVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKD 250
+ GD+I VF + LTPRGR+ I+++ +L GK+ D+++P +++ R+F LP D
Sbjct: 223 DIGAVVGDSIVVFEDCLILTPRGRFSIEVYADSIRLVGKSTDHRVPFTSIHRIFLLPKLD 282
Query: 251 GRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGP 310
V+ LDPPI+QG TRY FL + +DE EL +++EL + + L+K
Sbjct: 283 DLHVQLVLGLDPPIRQGATRYPFLVAQWPKDEVVNAELNLTDEELAQYPD--LEKTYEAT 340
Query: 311 TYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHI 370
T++V+++++K + +K+T PGS R G + + + KA G +Y LE+G IFI K PI I
Sbjct: 341 TFQVVSRVLKALTGKKVTPPGSLRNAQGLNGIRANVKAVQGELYFLEKGLIFISKQPILI 400
Query: 371 RFEEIATVNFARSGG---STRSFDFEIELKSGVL-HTFSSIEKEEYGKLFDFIREKKLRV 426
F + +++F+R GG S R+FD + K+G H FS+I K+E G + F++ K +R+
Sbjct: 401 DFSKTDSISFSRVGGGVASARTFDMRVVSKTGGADHVFSAINKQEVGPISSFLQSKNIRL 460
Query: 427 KNTGKGEKPNYKEDFGSSDDEKE 449
KN + + E F D+E E
Sbjct: 461 KNEMEEAIVDIDEPFSDDDEEME 483
>sp|Q4IJU0|POB3_GIBZE FACT complex subunit POB3 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=POB3 PE=3 SV=1
Length = 569
Score = 261 bits (667), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 167/516 (32%), Positives = 268/516 (51%), Gaps = 50/516 (9%)
Query: 21 GKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGS-LHRFAGFKE 79
GK + + +K G ++ ++ W + + ++I ++ S + + GF++
Sbjct: 19 GKCRFAETGFGWKPVGGGDTFTLDHNNIASAQWSRAAKGYEIKIVQRSKSGIIQLDGFQQ 78
Query: 80 TEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQC 139
+ D++ FK + + KE ++RGWNWG +F + L+F V N AFE+P ++
Sbjct: 79 EDYDRLAKVFKNWYSTVLESKEHALRGWNWGKAEFSKSELTFSVQNRPAFELPYSEIGNT 138
Query: 140 T-TGKNEVTVEFHPNDEAAES------------------LIEMRFYIPT--------NEI 172
G+NEV VE + A + L+EMRFYIP E
Sbjct: 139 NLAGRNEVAVEMALPESGANAQLGGARSKGSKAAAGRDQLVEMRFYIPGVTTRKEAEGED 198
Query: 173 AG--------DTDPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFF 224
AG + + F ++++++A + GD IA F ++ LTPRGR+DI ++ + F
Sbjct: 199 AGSDAGNDEQEKNAATLFYETLIDKAEIGETAGDTIATFLDVLHLTPRGRFDIDMYEASF 258
Query: 225 QLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETS 284
+L GKT+DYKI + + LP D V+ LDPP++QGQTRY F+ + F +DE
Sbjct: 259 RLRGKTYDYKIQYEAIKKFMVLPKPDEVHYMLVMGLDPPLRQGQTRYPFVVMQFKKDEEV 318
Query: 285 EMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGS-FRGHTGTSAVT 343
++L +E+ELK KY+ KL+ P ++V+AKI + + NRKI+ P F H +
Sbjct: 319 TIDLNLNEEELKSKYQDKLEPHYEEPLHQVVAKIFRGLGNRKISSPAKDFITHRNQYGIK 378
Query: 344 CSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARSGGSTRS---FDFEIELKSGV 400
CS KA+ G++Y LE+ F+F+ KP +I +E+ +V F+R G+ + FD + LK+G
Sbjct: 379 CSIKASEGFLYCLEKAFMFVPKPATYIAYEQTQSVTFSRVSGAVSALSTFDITVLLKNGA 438
Query: 401 LHT-FSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKR 459
+ FS+I +E+ L F + K LRVKN + D+ E +
Sbjct: 439 GSSQFSNISREDLKALESFFKLKGLRVKNEIDEDANLLAAAMNQQMDDSEDEV------- 491
Query: 460 EAAERDDEDDEDEDESTDEDFNPDQAESDVAEEYDS 495
AA+ D ++++ES DEDF D +ESDVAEEYDS
Sbjct: 492 -AAKADRGSADEDEESVDEDFRTD-SESDVAEEYDS 525
>sp|Q06943|HMGZ_DROME High mobility group protein Z OS=Drosophila melanogaster GN=HmgZ
PE=1 SV=1
Length = 111
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 61/77 (79%), Gaps = 3/77 (3%)
Query: 554 PKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKED 613
PK+P+SAYM+W N+ RE+IKKDNPG T+IAK+GGELW+ + K+K E+++K K KE+
Sbjct: 6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL--KDKTEWEQKAIKMKEE 63
Query: 614 YNEALKAYKESGGGQDS 630
YN+A+K Y E+ GG DS
Sbjct: 64 YNKAVKEY-EANGGTDS 79
>sp|Q05783|HMGD_DROME High mobility group protein D OS=Drosophila melanogaster GN=HmgD
PE=1 SV=1
Length = 112
Score = 86.3 bits (212), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
Query: 554 PKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKED 613
PK+P+SAYM+W N RE IK++NPGI TE+AK+GGELW+ + K+K+E++ K KAK+D
Sbjct: 5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDD 62
Query: 614 YNEALKAY 621
Y+ A+K +
Sbjct: 63 YDRAVKEF 70
>sp|P40622|HMG1A_CHITE Mobility group protein 1A OS=Chironomus tentans GN=HMG1A PE=3 SV=1
Length = 114
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 61/86 (70%), Gaps = 4/86 (4%)
Query: 554 PKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKED 613
PK+P+SAYM+W N RE IKK+NP TEIAKKGGELW+ + K+K+E++ K K KE+
Sbjct: 5 PKRPLSAYMLWLNSARESIKKENPDFKVTEIAKKGGELWRGM--KDKSEWEAKAAKMKEE 62
Query: 614 YNEALKAYKESGGGQDSDDGKTSKSK 639
Y +A+K ++ +GG D G ++K +
Sbjct: 63 YEKAMKEFERNGG--DKSSGASTKKR 86
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 63/92 (68%), Gaps = 4/92 (4%)
Query: 531 RKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGE 590
RK+K +E+ G RKKKD NAPK+ +SAYM + ND R+K++++NPGISF ++ K GE
Sbjct: 8 RKTKATRETGG----RKKKDPNAPKRGLSAYMFFANDNRDKVREENPGISFGQVGKMLGE 63
Query: 591 LWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622
WK++S KE+ Y++K K+ Y + AYK
Sbjct: 64 KWKSLSDKERKPYEDKAAADKKRYEDEKAAYK 95
>sp|P40623|HMG1B_CHITE Mobility group protein 1B OS=Chironomus tentans GN=HMG1B PE=3 SV=1
Length = 110
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 554 PKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKED 613
PK+P+SAYM+W N RE IK++NP TE+AKKGGELW+ + K+K+E++ K AK++
Sbjct: 5 PKRPLSAYMLWLNSARESIKRENPDFKVTEVAKKGGELWRGL--KDKSEWEAKAATAKQN 62
Query: 614 YNEALKAY 621
Y AL+ Y
Sbjct: 63 YIRALQEY 70
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 54/78 (69%)
Query: 544 TKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEY 603
TKR KKD NAPK+ +SAYM + N+ RE ++++NPGISF ++ K GE WK ++ K++A Y
Sbjct: 14 TKRAKKDPNAPKRGLSAYMFFANEQRENVREENPGISFGQVGKLLGERWKALNEKQRAPY 73
Query: 604 DEKVNKAKEDYNEALKAY 621
+ K K+ Y + +AY
Sbjct: 74 EAKAAADKKRYEDEKQAY 91
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nhp-6 PE=3 SV=1
Length = 103
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 59/92 (64%)
Query: 530 PRKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGG 589
P+ + K K + +R KKD NAPK+ +SAYM + N+ RE ++++NPG+SF ++ K G
Sbjct: 2 PKAAAKSKTTGKVEKRRAKKDPNAPKRGLSAYMFFANEQRENVREENPGVSFGQVGKILG 61
Query: 590 ELWKTVSSKEKAEYDEKVNKAKEDYNEALKAY 621
E WK +S K++A Y+ K K+ Y + +AY
Sbjct: 62 ERWKALSDKQRAPYEAKAAADKKRYEDEKQAY 93
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nhp6
PE=3 SV=1
Length = 104
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 6/105 (5%)
Query: 535 KDKESSGGSTKR---KKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGEL 591
K+K S+ TKR KKKD NAPK+ +SAYM + N+ R+K++++NPGISF ++ K GE
Sbjct: 3 KEKTSTRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGISFGQVGKMLGER 62
Query: 592 WKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTS 636
WK +S E+ Y+EK K+ Y + +Y QD D+ ++S
Sbjct: 63 WKALSDSERRPYEEKAAADKKRYEDEKASY---NAAQDEDEEESS 104
>sp|Q6CC79|NHP6_YARLI Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NHP6 PE=3 SV=1
Length = 103
Score = 73.2 bits (178), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 550 DKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNK 609
D NAPK+ +SAYM + ND R+ I+ DNPGI+F ++ K GE WKT++ EK Y+EK
Sbjct: 21 DPNAPKRALSAYMFFANDNRDAIRADNPGIAFGQVGKALGEKWKTLTDAEKVPYEEKATA 80
Query: 610 AKEDYNEALKAYKESGG 626
K+ Y + AYK +
Sbjct: 81 DKKRYEDEKAAYKANAA 97
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 550 DKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNK 609
D NAPK+P SA+ ++ ++ R KIK NPGIS ++AKK GE+W +S EK Y+ K K
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAK 148
Query: 610 AKEDYNEALKAYKESG 625
KE Y + + YK G
Sbjct: 149 LKEKYEKDVADYKSKG 164
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ KK NP ++F E +KK E WKT+SSKEKA++DE K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKDY 78
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%)
Query: 542 GSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKA 601
G K++ KD NAPK+P SA+ ++ D R ++K + PG+S ++AKK GE W +++++K
Sbjct: 82 GEKKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLSIGDVAKKLGEKWNNLTAEDKV 141
Query: 602 EYDEKVNKAKEDYNEALKAYKESG 625
Y++K ++ KE Y + + AY+ G
Sbjct: 142 PYEKKASRLKEKYEKDITAYRNKG 165
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 549 KDKNAPKKPMSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEK 606
KD P+ MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++
Sbjct: 3 KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 607 VNKAKEDYNEALKAY 621
K Y +++Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 47/76 (61%)
Query: 550 DKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNK 609
D NAPK+P S + ++ ++ R KIK NPGIS ++AKK GE+W +S EK Y+ K K
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAK 147
Query: 610 AKEDYNEALKAYKESG 625
KE Y + + YK G
Sbjct: 148 LKEKYEKDVADYKSKG 163
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ KK NP ++F E +KK E WKT+SSKEKA++DE K Y+
Sbjct: 13 MSAYAFFVQTCREEHKK-NPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYD 71
Query: 616 EALKAY 621
+K Y
Sbjct: 72 REMKDY 77
>sp|P26583|HMGB2_HUMAN High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2
Length = 209
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 552 NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAK 611
NAPK+P SA+ ++ ++ R KIK ++PG+S + AKK GE+W S+K+K Y++K K K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLK 152
Query: 612 EDYNEALKAYKESGGGQDSDDG 633
E Y + + AY+ G + G
Sbjct: 153 EKYEKDIAAYRAKGKSEAGKKG 174
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 548 KKDKNAPKKPMSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDE 605
K D N P+ MS+Y + RE+ KK +P ++F E +KK E WKT+S+KEK+++++
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 606 KVNKAKEDYNEALKAY 621
K Y+ +K Y
Sbjct: 63 MAKSDKARYDREMKNY 78
>sp|P40673|HMGB2_BOVIN High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3
Length = 209
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 552 NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAK 611
NAPK+P SA+ ++ ++ R KIK ++PG+S + AKK GE+W S+K+K Y++K K K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLK 152
Query: 612 EDYNEALKAYKESGGGQDSDDG 633
E Y + + AY+ G + G
Sbjct: 153 EKYEKDIAAYRAKGKSEAGKKG 174
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 548 KKDKNAPKKPMSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDE 605
K D N P+ MS+Y + RE+ KK +P ++F E +KK E WKT+S+KEK+++++
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 606 KVNKAKEDYNEALKAY 621
K Y+ +K Y
Sbjct: 63 MAKSDKARYDREMKNY 78
>sp|P52925|HMGB2_RAT High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2
SV=2
Length = 210
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 50/74 (67%)
Query: 552 NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAK 611
NAPK+P SA+ ++ ++ R KIK ++PG+S + AKK GE+W S+K+K Y++K K K
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLK 152
Query: 612 EDYNEALKAYKESG 625
E Y + + AY+ G
Sbjct: 153 EKYEKDIAAYRAKG 166
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 548 KKDKNAPKKPMSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDE 605
K D N P+ MS+Y + RE+ KK +P ++F E +KK E WKT+S+KEK+++++
Sbjct: 3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62
Query: 606 KVNKAKEDYNEALKAY 621
K Y+ +K Y
Sbjct: 63 LAKSDKARYDREMKNY 78
>sp|O15405|TOX3_HUMAN TOX high mobility group box family member 3 OS=Homo sapiens GN=TOX3
PE=1 SV=2
Length = 576
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 12/130 (9%)
Query: 495 SNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKDKESSGGSTKRKKKDKNAP 554
+ P+P+ S + DA E + I EK R + + K+KKKD N P
Sbjct: 208 ATPSPSSSINEEDADEANRA-----------IGEK-RAAPDSGKKPKTPKKKKKKDPNEP 255
Query: 555 KKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDY 614
+KP+SAY ++F D + IK NP +F E++K +W ++ ++K Y K AK++Y
Sbjct: 256 QKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEY 315
Query: 615 NEALKAYKES 624
+AL AY+ S
Sbjct: 316 LKALAAYRAS 325
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%)
Query: 550 DKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNK 609
D NAPK+P S + ++ ++ R KIK NPGIS ++AKK GE+W +S EK Y K K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTKAAK 148
Query: 610 AKEDYNEALKAYKESG 625
KE Y + + YK G
Sbjct: 149 LKEKYEKDVADYKSKG 164
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ KK NP ++F E +KK E WKT+SSKEK+++DE K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKDY 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.128 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 300,985,193
Number of Sequences: 539616
Number of extensions: 14233187
Number of successful extensions: 243880
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2647
Number of HSP's successfully gapped in prelim test: 4184
Number of HSP's that attempted gapping in prelim test: 91257
Number of HSP's gapped (non-prelim): 61632
length of query: 764
length of database: 191,569,459
effective HSP length: 125
effective length of query: 639
effective length of database: 124,117,459
effective search space: 79311056301
effective search space used: 79311056301
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 65 (29.6 bits)