Query psy2633
Match_columns 764
No_of_seqs 400 out of 1412
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 21:10:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0526|consensus 100.0 3E-174 7E-179 1406.4 49.1 593 1-622 1-600 (615)
2 COG5165 POB3 Nucleosome-bindin 100.0 9E-121 2E-125 949.6 34.0 474 5-498 3-494 (508)
3 PF03531 SSrecog: Structure-sp 100.0 1.5E-79 3.3E-84 624.8 9.4 213 74-286 1-222 (222)
4 KOG1189|consensus 100.0 1.6E-43 3.5E-48 396.9 11.4 233 202-440 607-865 (960)
5 COG5406 Nucleosome binding fac 100.0 5.2E-35 1.1E-39 322.5 17.9 241 189-440 640-917 (1001)
6 PF08512 Rtt106: Histone chape 99.9 1.6E-27 3.5E-32 215.0 10.2 91 339-429 1-95 (95)
7 PTZ00199 high mobility group p 99.8 2.7E-20 5.8E-25 167.8 10.6 80 543-622 12-93 (94)
8 cd01389 MATA_HMG-box MATA_HMG- 99.7 1.5E-17 3.2E-22 144.3 8.5 75 553-627 1-75 (77)
9 cd01388 SOX-TCF_HMG-box SOX-TC 99.7 1.2E-16 2.7E-21 136.8 8.1 70 554-623 2-71 (72)
10 COG5648 NHP6B Chromatin-associ 99.7 1.4E-16 3E-21 159.3 7.8 89 543-631 60-148 (211)
11 PF00505 HMG_box: HMG (high mo 99.6 4.1E-16 8.9E-21 131.5 8.7 69 554-622 1-69 (69)
12 cd01390 HMGB-UBF_HMG-box HMGB- 99.6 7.1E-16 1.5E-20 128.8 8.2 66 554-619 1-66 (66)
13 smart00398 HMG high mobility g 99.6 1.5E-15 3.3E-20 127.7 8.7 70 553-622 1-70 (70)
14 PF09011 HMG_box_2: HMG-box do 99.6 1.9E-15 4E-20 129.9 8.8 72 551-622 1-73 (73)
15 KOG0381|consensus 99.6 7.9E-15 1.7E-19 132.0 10.3 76 550-625 17-95 (96)
16 KOG0527|consensus 99.5 9.9E-15 2.1E-19 157.9 7.5 83 547-629 56-138 (331)
17 cd00084 HMG-box High Mobility 99.5 3.6E-14 7.9E-19 117.9 8.2 65 554-618 1-65 (66)
18 KOG3248|consensus 99.2 2.7E-11 5.9E-16 127.8 6.2 77 552-628 190-266 (421)
19 KOG4715|consensus 98.9 2.7E-09 5.9E-14 112.0 7.0 80 546-625 57-136 (410)
20 KOG0528|consensus 98.7 3.1E-09 6.8E-14 117.5 2.1 80 549-628 321-400 (511)
21 PF14887 HMG_box_5: HMG (high 98.4 9.5E-07 2.1E-11 75.6 8.2 77 553-630 3-79 (85)
22 KOG2746|consensus 98.0 5.9E-06 1.3E-10 95.2 5.0 71 547-617 175-247 (683)
23 PF14470 bPH_3: Bacterial PH d 96.5 0.016 3.5E-07 51.5 9.2 76 341-420 10-95 (96)
24 PF06382 DUF1074: Protein of u 96.4 0.0075 1.6E-07 60.1 6.9 48 558-609 83-130 (183)
25 PF04690 YABBY: YABBY protein; 96.4 0.0053 1.1E-07 61.3 5.4 46 551-596 119-164 (170)
26 COG5648 NHP6B Chromatin-associ 96.0 0.0049 1.1E-07 63.0 3.3 69 552-620 142-210 (211)
27 PF08512 Rtt106: Histone chape 95.0 0.071 1.5E-06 48.4 6.8 72 19-92 11-88 (95)
28 PF08073 CHDNT: CHDNT (NUC034) 94.2 0.059 1.3E-06 44.1 3.7 40 558-597 13-52 (55)
29 KOG1189|consensus 91.5 0.4 8.7E-06 57.2 6.9 69 291-362 710-779 (960)
30 PF14470 bPH_3: Bacterial PH d 90.3 1.4 3.1E-05 38.9 8.0 74 17-91 20-96 (96)
31 PF05764 YL1: YL1 nuclear prot 89.5 0.3 6.5E-06 51.8 3.4 12 474-485 38-49 (240)
32 KOG1832|consensus 88.9 0.25 5.5E-06 59.6 2.5 32 101-132 608-640 (1516)
33 PF04769 MAT_Alpha1: Mating-ty 88.0 0.91 2E-05 46.9 5.6 57 547-609 37-93 (201)
34 KOG0526|consensus 85.9 0.7 1.5E-05 53.3 3.7 54 97-150 7-66 (615)
35 PF08567 TFIIH_BTF_p62_N: TFII 84.1 2 4.3E-05 37.9 5.0 52 18-69 11-67 (79)
36 PF06244 DUF1014: Protein of u 83.8 1.2 2.7E-05 42.4 3.8 49 550-598 69-117 (122)
37 PF04283 CheF-arch: Chemotaxis 82.8 19 0.00042 37.8 12.6 149 16-170 23-198 (221)
38 COG0779 Uncharacterized protei 81.6 11 0.00024 37.4 9.7 88 47-140 24-148 (153)
39 COG5165 POB3 Nucleosome-bindin 79.9 5.9 0.00013 44.0 7.7 53 40-92 377-435 (508)
40 COG5406 Nucleosome binding fac 79.5 3.4 7.4E-05 48.7 6.0 18 363-380 862-879 (1001)
41 PF09073 BUD22: BUD22; InterP 78.9 12 0.00025 43.2 10.2 12 582-593 115-126 (432)
42 PF07622 DUF1583: Protein of u 74.4 17 0.00037 41.1 9.4 46 97-142 82-127 (399)
43 PF04147 Nop14: Nop14-like fam 67.2 21 0.00046 44.6 9.2 17 553-569 243-259 (840)
44 PRK14646 hypothetical protein; 66.7 43 0.00092 33.3 9.5 89 47-140 23-149 (155)
45 PF02893 GRAM: GRAM domain; I 61.8 11 0.00025 31.5 3.9 38 342-379 19-66 (69)
46 TIGR03481 HpnM hopanoid biosyn 61.0 16 0.00034 37.7 5.5 46 578-623 63-110 (198)
47 smart00568 GRAM domain in gluc 60.9 13 0.00028 30.4 4.0 38 342-379 12-58 (61)
48 PRK14630 hypothetical protein; 60.5 61 0.0013 31.8 9.2 88 47-140 24-141 (143)
49 KOG2002|consensus 59.0 26 0.00057 43.7 7.6 14 654-667 945-958 (1018)
50 KOG3223|consensus 58.7 7.1 0.00015 39.8 2.4 50 555-607 166-215 (221)
51 PF06524 NOA36: NOA36 protein; 57.5 7.4 0.00016 41.5 2.4 12 371-382 122-133 (314)
52 PF08567 TFIIH_BTF_p62_N: TFII 56.6 51 0.0011 29.1 7.2 55 343-399 6-67 (79)
53 PF03703 bPH_2: Bacterial PH d 55.0 26 0.00055 29.6 5.0 55 365-419 22-80 (80)
54 PRK14637 hypothetical protein; 54.8 97 0.0021 30.7 9.6 89 46-140 23-144 (151)
55 KOG2393|consensus 54.2 31 0.00067 40.4 6.8 19 578-596 173-191 (555)
56 PRK15117 ABC transporter perip 53.1 29 0.00062 36.2 5.9 47 577-623 66-114 (211)
57 PF14844 PH_BEACH: PH domain a 50.8 27 0.00059 31.8 4.8 59 18-77 16-92 (106)
58 PF06524 NOA36: NOA36 protein; 49.0 12 0.00025 40.1 2.2 6 561-566 53-58 (314)
59 PF03627 PapG_N: PapG carbohyd 48.9 18 0.00039 36.9 3.4 26 101-126 119-144 (226)
60 PF02893 GRAM: GRAM domain; I 48.7 28 0.00061 29.1 4.2 36 105-140 27-66 (69)
61 KOG2270|consensus 48.4 8.5 0.00018 43.7 1.2 19 410-428 325-343 (520)
62 PF03517 Voldacs: Regulator of 45.3 88 0.0019 30.2 7.5 79 110-192 1-105 (135)
63 cd00239 PapG_CBD PapG carbohyd 45.2 15 0.00032 36.8 2.2 25 102-126 98-122 (194)
64 PRK14634 hypothetical protein; 44.6 1.4E+02 0.0031 29.7 9.0 89 47-140 23-149 (155)
65 KOG0943|consensus 43.9 20 0.00044 45.5 3.4 19 344-362 850-868 (3015)
66 PF08000 bPH_1: Bacterial PH d 43.4 2.1E+02 0.0045 27.6 9.6 80 341-420 32-120 (124)
67 PF14844 PH_BEACH: PH domain a 43.0 86 0.0019 28.5 6.8 68 347-416 15-102 (106)
68 PF06213 CobT: Cobalamin biosy 42.2 1.7E+02 0.0037 31.7 10.1 61 556-622 140-203 (282)
69 PF14317 YcxB: YcxB-like prote 40.8 49 0.0011 26.2 4.4 62 25-90 1-62 (62)
70 PF12462 Helicase_IV_N: DNA he 40.7 90 0.0019 31.3 7.0 71 21-93 18-89 (166)
71 PRK14638 hypothetical protein; 39.9 1.5E+02 0.0032 29.4 8.3 45 47-96 24-69 (150)
72 PF09073 BUD22: BUD22; InterP 39.8 27 0.00059 40.3 3.6 15 612-626 132-146 (432)
73 PF13619 KTSC: KTSC domain 39.4 69 0.0015 26.5 5.0 42 44-87 2-43 (60)
74 KOG1060|consensus 38.9 31 0.00067 42.3 3.9 24 195-231 196-219 (968)
75 PRK14640 hypothetical protein; 37.8 2.3E+02 0.0051 28.0 9.4 88 47-140 22-146 (152)
76 KOG3064|consensus 37.4 16 0.00035 39.0 1.2 9 373-381 65-73 (303)
77 PRK14647 hypothetical protein; 36.1 2E+02 0.0043 28.7 8.6 45 47-96 24-68 (159)
78 COG4687 Uncharacterized protei 36.0 55 0.0012 30.9 4.2 75 17-94 21-98 (122)
79 PF03344 Daxx: Daxx Family; I 35.0 13 0.00028 45.6 0.0 8 581-588 329-336 (713)
80 PRK14631 hypothetical protein; 34.6 2.1E+02 0.0045 29.1 8.6 50 47-96 24-86 (174)
81 KOG0324|consensus 33.8 91 0.002 32.7 5.9 102 199-327 13-129 (214)
82 cd01201 Neurobeachin Neurobeac 30.9 27 0.00059 32.8 1.4 62 17-79 16-94 (108)
83 COG4547 CobT Cobalamin biosynt 30.7 56 0.0012 37.8 4.1 14 311-324 22-35 (620)
84 PF05285 SDA1: SDA1; InterPro 29.7 23 0.0005 39.3 0.9 12 610-621 27-38 (324)
85 TIGR02888 spore_YlmC_YmxH spor 29.6 1.2E+02 0.0027 26.6 5.2 48 196-243 15-67 (76)
86 PF05494 Tol_Tol_Ttg2: Toluene 28.9 75 0.0016 31.5 4.3 47 577-623 36-84 (170)
87 PF05470 eIF-3c_N: Eukaryotic 28.4 1.2E+02 0.0027 36.5 6.7 45 581-625 82-135 (595)
88 PF02576 DUF150: Uncharacteris 27.8 3.2E+02 0.0069 26.4 8.4 88 47-139 12-139 (141)
89 PF10756 bPH_6: Bacterial PH d 27.4 85 0.0019 26.7 3.9 56 22-81 3-58 (73)
90 PF04283 CheF-arch: Chemotaxis 27.0 7.6E+02 0.017 26.0 14.8 131 99-248 17-168 (221)
91 KOG0699|consensus 27.0 82 0.0018 35.5 4.4 6 415-420 72-77 (542)
92 PF15406 PH_6: Pleckstrin homo 26.6 1.3E+02 0.0029 28.3 5.1 48 366-420 63-110 (112)
93 PF05285 SDA1: SDA1; InterPro 26.4 36 0.00079 37.8 1.7 6 619-624 29-34 (324)
94 PHA02608 67 prohead core prote 26.1 41 0.00088 29.7 1.5 24 593-616 11-34 (80)
95 KOG2038|consensus 25.3 78 0.0017 38.9 4.2 13 123-135 143-155 (988)
96 KOG0296|consensus 25.1 1.5E+02 0.0033 33.5 6.0 61 5-75 114-176 (399)
97 PF05764 YL1: YL1 nuclear prot 24.8 99 0.0021 32.9 4.5 10 590-599 180-189 (240)
98 COG4909 PduC Propanediol dehyd 24.4 67 0.0015 35.9 3.2 44 57-101 34-77 (554)
99 KOG2038|consensus 24.2 72 0.0016 39.2 3.6 8 563-570 697-704 (988)
100 KOG2051|consensus 23.9 76 0.0016 40.2 3.9 19 551-569 794-812 (1128)
101 PF06115 DUF956: Domain of unk 23.6 2.2E+02 0.0048 27.2 6.0 76 17-95 21-100 (118)
102 PTZ00449 104 kDa microneme/rho 23.3 63 0.0014 38.0 2.8 23 541-563 906-928 (943)
103 PF13619 KTSC: KTSC domain 22.8 98 0.0021 25.6 3.2 39 373-416 4-42 (60)
104 COG3402 Uncharacterized conser 22.2 1.5E+02 0.0033 29.6 4.9 74 344-422 77-153 (161)
105 COG4343 CRISPR-associated prot 21.9 28 0.00061 37.3 -0.2 37 99-144 21-59 (281)
106 PF05793 TFIIF_alpha: Transcri 21.8 30 0.00066 41.0 0.0 11 400-410 144-154 (527)
107 PRK14636 hypothetical protein; 21.4 4.6E+02 0.0099 26.7 8.3 58 47-107 21-83 (176)
108 cd01794 DC_UbP_C dendritic cel 21.2 1.2E+02 0.0026 25.8 3.6 46 62-107 1-46 (70)
109 cd01763 Sumo Small ubiquitin-r 21.1 2.1E+02 0.0046 25.2 5.3 43 58-100 10-52 (87)
110 KOG0262|consensus 20.8 2.8E+02 0.006 36.2 7.7 27 65-91 510-536 (1640)
111 COG2854 Ttg2D ABC-type transpo 20.4 1.6E+02 0.0035 30.7 4.9 53 577-629 68-122 (202)
112 TIGR03503 conserved hypothetic 20.4 9E+02 0.019 27.7 11.1 80 191-271 163-244 (374)
No 1
>KOG0526|consensus
Probab=100.00 E-value=3.3e-174 Score=1406.41 Aligned_cols=593 Identities=55% Similarity=0.953 Sum_probs=547.7
Q ss_pred CCccccccceeecccCccccceEEEecCceeeeeCCCCceEEecCCCcceeEEEEeeCceeEEEEeeCCceEEecCCChh
Q psy2633 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKET 80 (764)
Q Consensus 1 m~~~~~f~~i~~~~~g~~~~G~lk~~~~g~~~k~~~~g~~~~i~~~di~~~~w~r~~~~~~l~i~~~~~~~~~f~Gf~~~ 80 (764)
||++|+|+||||+++|..++|+|||+.+||+||+.+||++++|+++||..+.|+|++|+|+|||++++|.+|+|+||+++
T Consensus 1 mae~l~fn~iyl~~~G~~~~G~lkit~~gi~~K~~~ggk~~~v~~sei~~~~w~k~~r~~~LrV~tk~g~~~~~~GF~d~ 80 (615)
T KOG0526|consen 1 MAESLEFNDIYLEVSGHLKPGTLKITESGIGFKNSKGGKVVTVPASEIDKVKWQKGVRGYGLRVFTKDGGVYRFDGFRDD 80 (615)
T ss_pred CCcccccCceEEecccccccceEEEccCceeEeeCCCCceEEeehHHhhhhhhhhhccccceEEEccCCceEEecCcCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCceeeeeeeeeeeeeeEecceEEEEeCCeeeEEeeccccccccCCCceEEEEecCCCCCccce
Q psy2633 81 EIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESL 160 (764)
Q Consensus 81 d~~~l~~~~~~~~~~~l~~~e~~~~G~NwG~~~~~~~~l~f~v~~k~~feip~~~is~~~~~Knev~lef~~~d~~~d~L 160 (764)
|++.|++||+++|+++|.+++|||+|||||++.|.|+.|+|.|++||||||||++|+||.+|||||+|||||+|+++..|
T Consensus 81 d~~~L~~ff~~~~~~~i~qkel~ikGwNwGea~~~G~~l~F~~~skpiFEIP~s~Vsn~l~gKNEv~LEFh~nDda~~~L 160 (615)
T KOG0526|consen 81 DLEKLKSFFSSNFSITIEQKELSIKGWNWGEADFKGQELVFDVNSKPIFEIPLSDVSNTLTGKNEVTLEFHQNDDAPVGL 160 (615)
T ss_pred HHHHHHHHHHHhhccchhhheeeecccccccccccCcEEEEeeCCceeEEeehhhhhhhhcCCceEEEEEeccCCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCC-CCChHHHHHHHHhcccccccccCceeEEEcceeeecCCcceEEEEeccceEEeeccceeeeecCC
Q psy2633 161 IEMRFYIPTNEIAG-DTDPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPIST 239 (764)
Q Consensus 161 ~emRf~vP~~~~~~-~~~~~~~f~~~i~~~a~i~~~~g~~i~~f~~i~~ltPRGry~i~~~~~~lrl~gkt~d~kI~y~n 239 (764)
||||||||.+..++ +.+++++|+++|+.+|+|++++|++||+|++|+||||||||+|+||+++||||||||||||+|++
T Consensus 161 mEmRF~iP~d~~~ged~~~~e~F~~~v~~kAdv~~~~gdaI~~f~~i~~lTPRGRYdI~iy~t~lrL~GkTyDyKI~y~S 240 (615)
T KOG0526|consen 161 MEMRFHIPEDQEDGEDRDKVEAFYENVLAKADVSSAVGDAIVSFEEILCLTPRGRYDIKIYPTFLRLHGKTYDYKIPYKS 240 (615)
T ss_pred EEEEEecCccccccccccHHHHHHHHHHHhcCcccccCCceEEeeeeeeecCCccceeEEehhhhhhcccccceecchhh
Confidence 99999999877543 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEeeecCCCceEEEEeccCCcccCCCccceeEEEEEecCCCcccccCCCHHHHHHHHhhhhhhccCCcHHHHHHHHH
Q psy2633 240 VLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIM 319 (764)
Q Consensus 240 I~r~F~lP~~d~~~~~~vi~L~~PIrqGqtky~~lv~qF~~eee~~~~l~~~~e~l~~k~~~kL~~~~~g~~~ev~~~~~ 319 (764)
|+|||+|||++++|+||||+|+||||||||||||||+||.++++++++|++++++|+.+|+++|++.|+||+|+||++||
T Consensus 241 I~rLflLPk~d~rh~~fVisldPPIRQGQTrY~~LV~qF~kDee~e~eLslsdE~l~~k~~~kL~k~ysg~i~Ev~s~V~ 320 (615)
T KOG0526|consen 241 INRLFLLPKKDQRHVYFVISLDPPIRQGQTRYPFLVLQFGKDEEVELELSLSDEELEEKYKGKLKKEYSGPIYEVFSIVM 320 (615)
T ss_pred eeeeEeccCCCCceEEEEEecCCccccCccccceEEEEeccccceeEeecccHHHHhhhhcchhhhhcCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcceeeccCCCcccCCCcceeeeeecCceeEEEecCCceeeeccCCeEEecCCeeEEEEEee---cCccceEeEEEEE
Q psy2633 320 KVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARS---GGSTRSFDFEIEL 396 (764)
Q Consensus 320 k~l~~~ki~~P~~F~s~~g~~~V~cs~ka~~G~LyPL~~~lifl~KPp~~I~~~eIe~V~feR~---~~~~rtFDm~i~~ 396 (764)
++|||+|||+||+|.|+.|++||+|++||++|+||||++|||||||||+||+|+||.+|||+|+ ++++|||||+|++
T Consensus 321 k~L~~rKit~Pg~F~s~~g~~av~CS~KAneG~LYPLekgFlFl~KP~l~I~f~EIS~V~fsR~~~s~t~trtFD~ei~l 400 (615)
T KOG0526|consen 321 KALCGRKITVPGEFLSHSGTAAVKCSFKANEGLLYPLEKGFLFLPKPPLYIRFEEISSVNFSRSGLSGTSTRTFDFEITL 400 (615)
T ss_pred HHHhCceeeccccccccCCCceeeeeecccCceEeecccceEeecCCceEeeccceeeEEEEeccCCccceeeEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999995 5679999999999
Q ss_pred cCCceEEEeccchhhHhhHHHHHhhcCceeeecCCCCCCCcccccCCCCCCCChhHHHHHHHHhhhcCCCC---CCCCCC
Q psy2633 397 KSGVLHTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDE---DDEDED 473 (764)
Q Consensus 397 K~~~~~~Fs~I~~eE~~~L~~~l~~k~i~I~n~~~~~~~~~~~~~~~~dde~~~d~~~e~~~~e~~~~~~~---~~dddd 473 (764)
|+|++|+|++|.++||.+|++||++|+|+|+|.+. +++.|+|++++++++..++++ ++.|++
T Consensus 401 k~g~~~tFs~i~keE~~~L~~fl~sK~lki~N~~~---------------~~~~D~~~~~~~~e~~~~edd~~d~~~de~ 465 (615)
T KOG0526|consen 401 KSGTSYTFSNISKEEYGKLFDFLNSKGLKIRNEGR---------------EDEIDEYLATLKAEDRDEEDDSDDSSTDED 465 (615)
T ss_pred cCCCeeeecccCHHHHHHHHHHHhhcCceeecCCc---------------ccccchHHhhhccccchhhhcccccccccc
Confidence 99999999999999999999999999999999876 345678899988887766543 224566
Q ss_pred CCCcCCCCCCCCccccccccCCCCCCCCCCCCCcccccchhhhhhhhccccccccCcccccccccCCCCCccccccCCCC
Q psy2633 474 ESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKDKESSGGSTKRKKKDKNA 553 (764)
Q Consensus 474 ee~Dedf~~~~~esd~~ee~dS~~e~~~~s~~~~~se~ee~e~k~KK~k~~k~~~KpkKkKk~k~~kk~kk~kk~kdp~~ 553 (764)
++.|+||.++++++|++|+|||+.. ++++++++|++.+ +++++. .||+..++.+.++++++.||+||||+
T Consensus 466 ~e~Dedf~~~~~~d~vaee~dS~~~--ds~~~eg~S~~~~--k~~~~~------kk~K~ek~~k~~~~~k~~kk~kdpna 535 (615)
T KOG0526|consen 466 EEEDEDFKPGEEDDDVAEEFDSDEA--DSSDEEGDSDEPK--KERSSE------KKPKREKKEKEKEKKKKGKKKKDPNA 535 (615)
T ss_pred hhhhhhcccCccccccccccCCccc--ccccccCCccccc--cccccc------ccchhhhHhhhhccccCcccCCCCCC
Confidence 7889999999988899999999422 3333344444211 111111 12222233344445577889999999
Q ss_pred CCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2633 554 PKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622 (764)
Q Consensus 554 PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~ 622 (764)
||||+||||+|++..|..|+.+ |+++++|+|++|++|+.|++ |.+|+++|+.+|+||+.+|++|+
T Consensus 536 pkra~sa~m~w~~~~r~~ik~d--gi~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~~yk 600 (615)
T KOG0526|consen 536 PKRATSAYMLWLNASRESIKED--GISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMKEYK 600 (615)
T ss_pred CccchhHHHHHHHhhhhhHhhc--CchHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998 99999999999999999999 99999999999999999999999
No 2
>COG5165 POB3 Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=100.00 E-value=8.7e-121 Score=949.57 Aligned_cols=474 Identities=35% Similarity=0.628 Sum_probs=434.0
Q ss_pred ccccceeecccCccccceEEEecCceeeeeC-CCCceEEecCCCcceeEEEEeeCceeEEEEeeCCceEEecCCChhhHH
Q psy2633 5 LEFQEVSSEFRGALCPGKLKITDQNIVFKNK-KTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKETEID 83 (764)
Q Consensus 5 ~~f~~i~~~~~g~~~~G~lk~~~~g~~~k~~-~~g~~~~i~~~di~~~~w~r~~~~~~l~i~~~~~~~~~f~Gf~~~d~~ 83 (764)
..|++||+++ +..+|+|||+.+|||||.+ ..-+++|++.++|+.++|+|++|||.|+|.+++..+|.++||.+.|++
T Consensus 3 t~~D~iyln~--s~k~g~~rIa~sGlgwK~s~s~~~pftlp~~Ev~~~~wsrg~Rgy~lkI~~k~~~v~~ldgfsQ~d~d 80 (508)
T COG5165 3 TLNDCIYLND--SDKKGTVRIARSGLGWKASDSERKPFTLPRNEVKDAEWSRGVRGYKLKIRVKGNAVYELDGFSQNDID 80 (508)
T ss_pred cccceeEecc--cccCceEEEcCCCceeecCCccCCceeechhHhhHHHHhhhcccceEEEEEcCCCceEecCcCHHHHH
Confidence 4799999986 7789999999999999953 334799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCceeeeeeeeeeeeeeEecceEEEEeCCeeeEEeecccccccc-CCCceEEEEecCCCC----Ccc
Q psy2633 84 KICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQCT-TGKNEVTVEFHPNDE----AAE 158 (764)
Q Consensus 84 ~l~~~~~~~~~~~l~~~e~~~~G~NwG~~~~~~~~l~f~v~~k~~feip~~~is~~~-~~Knev~lef~~~d~----~~d 158 (764)
.|++.|+++|+|.|++|||+++|||||.+.|+|+.++|.+|+||+||||++.|.|+| ++||||+|+|...|+ +.|
T Consensus 81 ~lkn~f~~~F~i~~eqkE~si~gwnwGe~~~~g~e~vf~~N~kp~FEIP~~~i~ntnl~~kNEv~vef~~~de~~~pa~d 160 (508)
T COG5165 81 ELKNIFSEYFRITLEQKELSIAGWNWGELGINGQEAVFFRNTKPIFEIPVDDIENTNLDIKNEVSVEFRIQDEEYQPAGD 160 (508)
T ss_pred HHHHHHHHheeeeEEEeeeeeccccccccccccceeeeeecCCeeEEeehhhhccccccccceeEEEEeccccccCCCcc
Confidence 999999999999999999999999999999999999999999999999999999998 699999999985443 469
Q ss_pred ceEEEEEecCCCCC-----CC---CCChHHHHHHHHhcccccccccCceeEEEcceeeecCCcceEEEEeccceEEeecc
Q psy2633 159 SLIEMRFYIPTNEI-----AG---DTDPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKT 230 (764)
Q Consensus 159 ~L~emRf~vP~~~~-----~~---~~~~~~~f~~~i~~~a~i~~~~g~~i~~f~~i~~ltPRGry~i~~~~~~lrl~gkt 230 (764)
+|||||||+|++.. ++ +...|++||+.|+++|+||+++||+|++|.+|+++||||||+|+||.++|||+|||
T Consensus 161 elvEmRfy~pg~~~kEd~a~Ge~vek~~a~~fye~lkekadige~agDaIvsf~~~~l~tPRGrydid~y~~~lRLrGkt 240 (508)
T COG5165 161 ELVEMRFYSPGVKTKEDIAGGESVEKSMAEAFYEELKEKADIGESAGDAIVSFEGLSLATPRGRYDIDFYRDYLRLRGKT 240 (508)
T ss_pred cceEEEEecCCCcchhhccCcchhhHHHHHHHHHHHhhhcccccccccceeeeeceeeecCCccccchhhhhhhhhcccc
Confidence 99999999998541 11 34579999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCeeeEEeeecCCCceEEEEeccCCcccCCCccceeEEEEEecCCCcccccCCCHHHHHHHHhhhhhhccCCc
Q psy2633 231 FDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGP 310 (764)
Q Consensus 231 ~d~kI~y~nI~r~F~lP~~d~~~~~~vi~L~~PIrqGqtky~~lv~qF~~eee~~~~l~~~~e~l~~k~~~kL~~~~~g~ 310 (764)
|||||.|++|+++|+||++++.|++|||++.||||||||||||||+||.++++++++||+.++.++++|+++|...|.|+
T Consensus 241 YdyKi~y~sI~~l~~LpK~dd~h~~~Vig~ePPlRQGQTrYpflV~qF~kded~Ev~Lnvede~~~e~y~dklK~~Yd~~ 320 (508)
T COG5165 241 YDYKIYYKSIKMLYVLPKIDDGHRYVVIGAEPPLRQGQTRYPFLVVQFQKDEDVEVELNVEDEDYEENYKDKLKGEYDGL 320 (508)
T ss_pred cceeeeeeeeeEEEEeccCCCccEEEEEecCCcccCCCccCCeEEEEEecccceeeeeccchhhhhhhHHHhhhhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcceeeccCCCcccCCCcceeeeeecCceeEEEecCCceeeeccCCeEEecCCeeEEEEEeec---Ccc
Q psy2633 311 TYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARSG---GST 387 (764)
Q Consensus 311 ~~ev~~~~~k~l~~~ki~~P~~F~s~~g~~~V~cs~ka~~G~LyPL~~~lifl~KPp~~I~~~eIe~V~feR~~---~~~ 387 (764)
+++||+++|++||++|+++|+.|.|+.|+.||+|++||++|+||||.+||+||+||+++|++++|..|+|+|++ .+.
T Consensus 321 ~~ev~s~v~~gLt~rkvv~p~ef~S~~g~~av~Cs~KAnEGqLYpLD~~flFlpKptl~l~~sdis~V~~SRig~ss~~a 400 (508)
T COG5165 321 LSEVFSEVMEGLTVRKVVRPSEFESRDGMRAVRCSMKANEGQLYPLDDCFLFLPKPTLRLDLSDISLVEFSRIGLSSMQA 400 (508)
T ss_pred HHHHHHHHHHhhcceeeecchhhcccCCceeeeeeeeccCceEeeccceEEeccCceEEeecccceEEEEeecccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999954 468
Q ss_pred ceEeEEEEEcCCceEEEeccchhhHhhHHHHHhhcCceeeecCCCCCCCcccccC-CCCCCCChhHHHHHHHHhhhcCCC
Q psy2633 388 RSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFG-SSDDEKEPDAYLARVKREAAERDD 466 (764)
Q Consensus 388 rtFDm~i~~K~~~~~~Fs~I~~eE~~~L~~~l~~k~i~I~n~~~~~~~~~~~~~~-~~dde~~~d~~~e~~~~e~~~~~~ 466 (764)
|||||++++++++.++|++|.+.|+..|.+||.+|+|+++|...... ...+++ .+|+++. +.
T Consensus 401 rTFDlt~~lrs~~sytF~nisk~Eq~aLeqfl~sK~ik~~ne~~~e~--~qt~lgs~sD~Ed~---------------~~ 463 (508)
T COG5165 401 RTFDLTLFLRSPGSYTFNNISKDEQGALEQFLHSKGIKARNEEVQER--LQTDLGSISDSEDI---------------NM 463 (508)
T ss_pred ceeeEEEEEecCCceeecCcCHHHHHHHHHHHhccCceecchhhhhh--hhhccccccchhhh---------------cc
Confidence 99999999999999999999999999999999999999999843211 111222 2232211 11
Q ss_pred CCCCCCCCCCcCCCCCCCCccccccccCCCCC
Q psy2633 467 EDDEDEDESTDEDFNPDQAESDVAEEYDSNPT 498 (764)
Q Consensus 467 ~~~ddddee~Dedf~~~~~esd~~ee~dS~~e 498 (764)
+++.++++++||||+.. +++|++||||+++.
T Consensus 464 ~~~~eedesedEdfq~~-sdsDvaeEyD~~a~ 494 (508)
T COG5165 464 GSAGEEDESEDEDFQMV-SDSDVAEEYDLQAA 494 (508)
T ss_pred cccccccccccccccee-eccchhhhhccchh
Confidence 34455667889999986 57899999999876
No 3
>PF03531 SSrecog: Structure-specific recognition protein (SSRP1); InterPro: IPR000969 Human structure-specific recognition protein, SSRP1, [] binds specifically to DNA modified with the anti-cancer drug cisplatin. An 81kDa protein is predicted, containing several highly-charged domains and a stretch of 75 residues that share 47% identity with a portion of the high mobility group (HMG) protein HMG1. This HMG box probably constitutes the structure recognition element for cisplatin-modified DNA, the probable recognition motif being the local duplex unwinding and bending that occurs on formation of intra-strand cross-links []. SSRP1 is the human homologue of a recently identified mouse protein that binds to recombination signal sequences []. These sequences have been postulated to form stem-loop structures, further implicating local bends and unwinding in DNA as a recognition target for HMG-box proteins. A Drosophila melanogaster cDNA encoding an HMG-box-containing protein has also been isolated [, ]. This protein shares 50% sequence identity with human SSRP1. In vitro binding studies using Drosophila SSRP showed that the protein binds to single-stranded DNA and RNA, with highest affinity for nucleotides G and U. Comparison of the predicted amino acid sequences among SSRP family members reveals 48% identity, with structural conservation in the C terminus of the HMG box, as well as domains of highly charged residues. The most highly conserved regions lie in the poorly understood N terminus, suggesting that this portion of the protein is critical for its function []. This entry contains Pob3 Q04636 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p (IPR013953 from INTERPRO)-Pob3p) []. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 3F5R_A 2GCL_B 2GCJ_D.
Probab=100.00 E-value=1.5e-79 Score=624.84 Aligned_cols=213 Identities=55% Similarity=1.041 Sum_probs=111.6
Q ss_pred ecCCChhhHHHHHHHHHHhcCCCCCceeeeeeeeeeeeeeEecceEEEEeCCeeeEEeecccccccc-CCCceEEEEecC
Q psy2633 74 FAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQCT-TGKNEVTVEFHP 152 (764)
Q Consensus 74 f~Gf~~~d~~~l~~~~~~~~~~~l~~~e~~~~G~NwG~~~~~~~~l~f~v~~k~~feip~~~is~~~-~~Knev~lef~~ 152 (764)
|+||+++|+++|++||++||+|+|++++||++|||||++.|.|+.|+|.|+|||||||||++||||| +|||||+||||+
T Consensus 1 FdGF~~~D~~~L~~~~k~~y~i~le~~els~kGwNWG~~~~~g~~L~F~v~~K~aFEIPl~~Vsn~n~~gKNEV~lEF~~ 80 (222)
T PF03531_consen 1 FDGFKEEDFEKLKKFFKKNYDIELEEKELSVKGWNWGKADFEGSELVFNVDNKPAFEIPLSDVSNCNLAGKNEVALEFHQ 80 (222)
T ss_dssp EEEE-GGGHHHHHHHHHHHH----EE-SSTTTT-----------------------------------------------
T ss_pred CcCCCHHHHHHHHHHHHHHcCCCCcccceecCCEeeceeEEcCCEEEEEECCeEEEEeeHHHhhhccCCCCCEEEEEcCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999996 799999999999
Q ss_pred CCCC----ccceEEEEEecCCCCCCC----CCChHHHHHHHHhcccccccccCceeEEEcceeeecCCcceEEEEeccce
Q psy2633 153 NDEA----AESLIEMRFYIPTNEIAG----DTDPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFF 224 (764)
Q Consensus 153 ~d~~----~d~L~emRf~vP~~~~~~----~~~~~~~f~~~i~~~a~i~~~~g~~i~~f~~i~~ltPRGry~i~~~~~~l 224 (764)
+|++ .|+|||||||||+++.+. +.++|++|+++||++|+|++++|++||+|.+|+||||||||+|+||+++|
T Consensus 81 ~d~~~~~~~D~LvEmRFyvP~~~~~~~~Dee~~~a~~f~~~i~~ka~i~~~~g~~i~~f~~i~~ltPRGRydi~~y~~~l 160 (222)
T PF03531_consen 81 DDDAEVANEDSLVEMRFYVPGTEKEEDEDEEDSAAEAFYDTILEKADIGQVSGDAIASFEDILCLTPRGRYDIEMYPTFL 160 (222)
T ss_dssp ----------------------------------------------------TTSSEEEEEEEEEETTEEEEEEE-SSEE
T ss_pred CCCCCCCCCCEEEEEEEEcCCCCCcccccccccHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence 8875 479999999999984322 34599999999999999999999999999999999999999999999999
Q ss_pred EEeeccceeeeecCCeeeEEeeecCCCceEEEEeccCCcccCCCccceeEEEEEecCCCccc
Q psy2633 225 QLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEM 286 (764)
Q Consensus 225 rl~gkt~d~kI~y~nI~r~F~lP~~d~~~~~~vi~L~~PIrqGqtky~~lv~qF~~eee~~~ 286 (764)
|||||||||||+|++|.|+|+||+||++|++|||+|+|||||||||||||||||.+++++++
T Consensus 161 rl~GktyDykI~y~~I~rlflLpk~d~~~~~~Vi~LdpPiRQGQT~Y~~lV~qf~~de~~~~ 222 (222)
T PF03531_consen 161 RLHGKTYDYKIQYSSISRLFLLPKPDDRHVFFVISLDPPIRQGQTRYPFLVMQFSKDEEVEV 222 (222)
T ss_dssp EEEESSBEEEEEGGGEEEEEEEE-TTSSEEEEEEEEEEEEEETTEEEEEEEEEEETT-EEE-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999987653
No 4
>KOG1189|consensus
Probab=100.00 E-value=1.6e-43 Score=396.89 Aligned_cols=233 Identities=15% Similarity=0.200 Sum_probs=182.7
Q ss_pred EEcceeeecC----CcceEEEEeccceEEeec-cceeeeecCCeeeEEeeecCCCceEEEEeccCCcccCCCccceeEEE
Q psy2633 202 VFNEIQCLTP----RGRYDIKIFNSFFQLHGK-TFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTL 276 (764)
Q Consensus 202 ~f~~i~~ltP----RGry~i~~~~~~lrl~gk-t~d~kI~y~nI~r~F~lP~~d~~~~~~vi~L~~PIrqGqtky~~lv~ 276 (764)
.|.+|.+-+| |-...|++|.||||+.+- .-.++|+|+||+|+|||||..+|++++||||++|||.|++|+ .++
T Consensus 607 ~L~dlyiRp~i~~Kr~~G~lEaH~NGfRy~s~R~~~vdiLfsNIKhafFqpc~~Emi~llHfHLknpIm~GkkK~--~dV 684 (960)
T KOG1189|consen 607 KLKDLYIRPNIDTKRIPGSLEAHENGFRYQSLRDERVDILFSNIKHAFFQPCEGEMIILLHFHLKNPIMVGKKKT--KDV 684 (960)
T ss_pred chhheEecCCccccccccceeeecCceeeeeccccchhhhhhhhhhhhcCccccceeeEeeehhccceeecccce--eee
Confidence 8899998877 888999999999999983 247899999999999999999999999999999999999999 799
Q ss_pred EEecC-CCcccccC-----CCHHHHHHHHhhhhhhccCCcHHHHHHHHHHHhcceeeccCCCcccCCCcceeeeeecCce
Q psy2633 277 LFNQD-ETSEMELP-----FSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAA 350 (764)
Q Consensus 277 qF~~e-ee~~~~l~-----~~~e~l~~k~~~kL~~~~~g~~~ev~~~~~k~l~~~ki~~P~~F~s~~g~~~V~cs~ka~~ 350 (764)
|||++ .++..+|+ +++++|.+..+++-.++-....|.-|+.-...++.-.+ .|..+....|+.+....+.
T Consensus 685 QFY~Ev~div~dlg~~~~~~D~del~~EQ~Er~rr~~ln~~FksF~~kv~~~~~~~~----efd~pfr~lGF~GvP~rss 760 (960)
T KOG1189|consen 685 QFYREVGDIVTDLGKRRRMGDRDELEQEQEERDRRAKLNMAFKSFAEKVAEATESEL----EFDVPFRELGFNGVPFRSS 760 (960)
T ss_pred eeeehhhhHHHhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccce----eeccchhhcCcCCCCccce
Confidence 99998 44544454 46666654443332222111222222222222332111 3444444444445556788
Q ss_pred eEEEecCCceeeeccCCeE-EecCCeeEEEEEeecCccceEeEEEEEcC--CceEEEeccchhhHhhHHHHHhhcCc---
Q psy2633 351 GYIYPLERGFIFIHKPPIH-IRFEEIATVNFARSGGSTRSFDFEIELKS--GVLHTFSSIEKEEYGKLFDFIREKKL--- 424 (764)
Q Consensus 351 G~LyPL~~~lifl~KPp~~-I~~~eIe~V~feR~~~~~rtFDm~i~~K~--~~~~~Fs~I~~eE~~~L~~~l~~k~i--- 424 (764)
++|.||..|||.|+.+|+| |+|+||+.|||+|+++++|||||+|+||+ ..+.++++||.+.+++|++||++|+|
T Consensus 761 v~i~pTs~cLV~LtE~P~~VvtL~eVEiv~~ERV~f~lKnfDmvfIfKd~~k~v~~i~svp~~sLd~iKEWLdscDI~y~ 840 (960)
T KOG1189|consen 761 VFIQPTSSCLVNLTEWPFFVVTLEEVEIVNLERVQFGLKNFDMVFIFKDFKKKVTMINSVPMESLDKLKEWLDSCDIKYT 840 (960)
T ss_pred eeeecchhhhhccccCCceEEeecceeeeeeeeeeeccccceEEEEeccccccceeeeccchhhhhHHHHhhhcccceee
Confidence 8999999999999987777 79999999999999999999999999995 78999999999999999999999999
Q ss_pred ---------eeeecCCCCCCCcccc
Q psy2633 425 ---------RVKNTGKGEKPNYKED 440 (764)
Q Consensus 425 ---------~I~n~~~~~~~~~~~~ 440 (764)
+||+++..++.+|+++
T Consensus 841 Eg~~sLNW~~ImKTI~dDP~~Ffe~ 865 (960)
T KOG1189|consen 841 EGVQSLNWTKIMKTITDDPIAFFED 865 (960)
T ss_pred cccccccHHHHhhhhccCHHHHHhc
Confidence 4888888888877654
No 5
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=100.00 E-value=5.2e-35 Score=322.47 Aligned_cols=241 Identities=16% Similarity=0.234 Sum_probs=175.9
Q ss_pred ccccccccCceeEEEcceeeecC----CcceEEEEeccceEEeecc---ceeeeecCCeeeEEeeecCCCceEEEEeccC
Q psy2633 189 QASVINATGDAIAVFNEIQCLTP----RGRYDIKIFNSFFQLHGKT---FDYKIPISTVLRMFTLPHKDGRQNFFVISLD 261 (764)
Q Consensus 189 ~a~i~~~~g~~i~~f~~i~~ltP----RGry~i~~~~~~lrl~gkt---~d~kI~y~nI~r~F~lP~~d~~~~~~vi~L~ 261 (764)
+..++...-..-..+..+.+.+- |---.|++|.|+||+++.- --+.|+|+||+|+|||||..++++++||||+
T Consensus 640 qdKlie~k~~rt~~~~~~~vRp~~d~KR~pg~~eiHeNGiRfqsplrsds~idiLFSNikhlfFq~c~gEliviiH~HLk 719 (1001)
T COG5406 640 QDKLIERKLSRTDVYMKTDVRPGSDGKRKPGNLEIHENGIRFQSPLRSDSHIDILFSNIKHLFFQECNGELIVIIHFHLK 719 (1001)
T ss_pred hhhhhhccccccchhhhcccccCCCcCccCccEEEecCceeecCCcccCceeEEeeccchhheeccCCceEEEEEEEeec
Confidence 33333333333444555544432 5567999999999999863 2589999999999999999999999999999
Q ss_pred CcccCCCccceeEEEEEecCC-CcccccC---------CCHHHHHHHHhhhhhhccCCcHHHHHHHHHHHhc----ceee
Q psy2633 262 PPIKQGQTRYHFLTLLFNQDE-TSEMELP---------FSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIV----NRKI 327 (764)
Q Consensus 262 ~PIrqGqtky~~lv~qF~~ee-e~~~~l~---------~~~e~l~~k~~~kL~~~~~g~~~ev~~~~~k~l~----~~ki 327 (764)
+||+.|+.+. ..+|||++. ++.++-. .+++++++..+++-++.-....|.-|+......+ ..++
T Consensus 720 ~PIl~GkrKv--qdVQFYREasd~~vdeTg~~~rk~~ygdedElEqEqeerrrraald~eFksFa~~Iaeas~gri~~~~ 797 (1001)
T COG5406 720 SPILTGKRKV--QDVQFYREASDTMVDETGKRGRKEHYGDEDELEQEQEERRRRAALDQEFKSFASSIAEASEGRIEFKV 797 (1001)
T ss_pred CceecCCcee--eeeeeeecccccchhhhccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEee
Confidence 9999999998 799999983 3334332 2455565554444333222223333333222222 2333
Q ss_pred ccCC-CcccCCCcceeeeeecCceeEEEecCCceeeeccCCeE-EecCCeeEEEEEeecCccceEeEEEEEcC--CceEE
Q psy2633 328 TVPG-SFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIH-IRFEEIATVNFARSGGSTRSFDFEIELKS--GVLHT 403 (764)
Q Consensus 328 ~~P~-~F~s~~g~~~V~cs~ka~~G~LyPL~~~lifl~KPp~~-I~~~eIe~V~feR~~~~~rtFDm~i~~K~--~~~~~ 403 (764)
+.|. .|.|.+. ++.++|.|+..|||.|..|||+ |+|++|+.|+|+|+++++|||||++++++ +++++
T Consensus 798 ~fr~lgF~GVPf---------Rs~V~~~pTtdCLVqL~e~Pf~VitLeevEi~~lERVqfglKnfD~vFi~~df~rp~vh 868 (1001)
T COG5406 798 QFRKLGFYGVPF---------RSSVMIKPTTDCLVQLDEAPFFVITLEEVEIVNLERVQFGLKNFDVVFILRDFYRPLVH 868 (1001)
T ss_pred echhccccCCcc---------ccceeeecchhheeeccCCceEEEEecceeEEeeeeEEeecccceEEEEeccccCCcce
Confidence 3332 3444443 3455666999999999999998 79999999999999999999999999996 78999
Q ss_pred EeccchhhHhhHHHHHhhcCce------------eeecCCCCCCCcccc
Q psy2633 404 FSSIEKEEYGKLFDFIREKKLR------------VKNTGKGEKPNYKED 440 (764)
Q Consensus 404 Fs~I~~eE~~~L~~~l~~k~i~------------I~n~~~~~~~~~~~~ 440 (764)
|++||.+.++.|++||++++|. ||+.+..++..|+.+
T Consensus 869 Intvpvesld~lKewLds~di~f~e~~~nlnW~timksi~~DPi~Ffed 917 (1001)
T COG5406 869 INTVPVESLDKLKEWLDSNDILFMETSANLNWNTIMKSIMKDPISFFED 917 (1001)
T ss_pred eccccHHHHHHHHHHhhhcCceeEeccccccHHHHHHHHhcCcHHHhhc
Confidence 9999999999999999999994 666666777666543
No 6
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=99.94 E-value=1.6e-27 Score=215.03 Aligned_cols=91 Identities=44% Similarity=0.857 Sum_probs=83.7
Q ss_pred cceeeeeecCceeEEEecCCceee-eccCCeEEecCCeeEEEEEee-cCccceEeEEEEEcC--CceEEEeccchhhHhh
Q psy2633 339 TSAVTCSYKAAAGYIYPLERGFIF-IHKPPIHIRFEEIATVNFARS-GGSTRSFDFEIELKS--GVLHTFSSIEKEEYGK 414 (764)
Q Consensus 339 ~~~V~cs~ka~~G~LyPL~~~lif-l~KPp~~I~~~eIe~V~feR~-~~~~rtFDm~i~~K~--~~~~~Fs~I~~eE~~~ 414 (764)
++||+|++||++|+||||++||+| ++||+++|+++||+.|+|+|+ +.++|||||+|++|+ +++++|+||+++||++
T Consensus 1 f~~V~c~~ka~~g~L~pl~~~l~f~~~kP~~~i~~~dI~~v~feRv~~~~~ktFDl~v~~k~~~~~~~~fs~I~~~e~~~ 80 (95)
T PF08512_consen 1 FYGVKCSYKANEGFLYPLEKCLLFGLEKPPFVIPLDDIESVEFERVSSFSSKTFDLVVILKDYEGPPHEFSSIDREEYDN 80 (95)
T ss_dssp -EEEEEEETTEEEEEEEESSEEEEECSSS-EEEEGGGEEEEEEE--ESSSSSEEEEEEEETT-TS-EEEEEEEEGGGHHH
T ss_pred CCceeEeccccCEEEEEccceEEEecCCCeEEEEhhHeeEEEEEecccCcceEEEEEEEEecCCCCcEEEeeECHHHHHH
Confidence 469999999999999999999999 899999999999999999995 899999999999998 8999999999999999
Q ss_pred HHHHHhhcCceeeec
Q psy2633 415 LFDFIREKKLRVKNT 429 (764)
Q Consensus 415 L~~~l~~k~i~I~n~ 429 (764)
|++||++++|+|+|+
T Consensus 81 l~~~l~~~~i~~~~~ 95 (95)
T PF08512_consen 81 LKDFLKSKNIKIKNE 95 (95)
T ss_dssp HHHHHHHCCHHCCCH
T ss_pred HHHHHHHCCCEeecC
Confidence 999999999999875
No 7
>PTZ00199 high mobility group protein; Provisional
Probab=99.83 E-value=2.7e-20 Score=167.82 Aligned_cols=80 Identities=39% Similarity=0.686 Sum_probs=75.9
Q ss_pred CccccccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCC--HHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2633 543 STKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGIS--FTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKA 620 (764)
Q Consensus 543 kk~kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s--~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~ 620 (764)
+++++.+||++||||+||||+|++++|..|+.+||+++ +++|+++||++|+.|++++|++|+++|+.++++|.++|.+
T Consensus 12 ~~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~~e~~~ 91 (94)
T PTZ00199 12 KNKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEKEKAE 91 (94)
T ss_pred ccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456789999999999999999999999999999986 8999999999999999999999999999999999999999
Q ss_pred hh
Q psy2633 621 YK 622 (764)
Q Consensus 621 Y~ 622 (764)
|+
T Consensus 92 Y~ 93 (94)
T PTZ00199 92 YA 93 (94)
T ss_pred Hh
Confidence 95
No 8
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.72 E-value=1.5e-17 Score=144.31 Aligned_cols=75 Identities=27% Similarity=0.497 Sum_probs=72.1
Q ss_pred CCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy2633 553 APKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGG 627 (764)
Q Consensus 553 ~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~~ 627 (764)
+||||+||||||+++.|..|+.+||++++++|+++||++|+.|++++|++|.++|++++++|.++|++|+..+..
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~p~~ 75 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYKYTPRK 75 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCcccCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999987643
No 9
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.67 E-value=1.2e-16 Score=136.84 Aligned_cols=70 Identities=33% Similarity=0.462 Sum_probs=68.4
Q ss_pred CCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2633 554 PKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKE 623 (764)
Q Consensus 554 PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~ 623 (764)
.|||+||||+|++++|++++++||++++++|+++||++|+.|++++|++|.++|++++++|.++++.|+.
T Consensus 2 iKrP~naf~~F~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y~y 71 (72)
T cd01388 2 IKRPMNAFMLFSKRHRRKVLQEYPLKENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYKW 71 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999975
No 10
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.66 E-value=1.4e-16 Score=159.27 Aligned_cols=89 Identities=34% Similarity=0.618 Sum_probs=83.4
Q ss_pred CccccccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2633 543 STKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622 (764)
Q Consensus 543 kk~kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~ 622 (764)
...++++|||+||||+||||+|++++|.+|+.++|.+++++|++.+|++|++|++++|++|...|..++++|.+++..|.
T Consensus 60 ~~~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq~ek~~y~ 139 (211)
T COG5648 60 RLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKLTFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEEYN 139 (211)
T ss_pred HHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHHHHHHhhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCC
Q psy2633 623 ESGGGQDSD 631 (764)
Q Consensus 623 ~~~~~~~~~ 631 (764)
++.+.....
T Consensus 140 ~k~~~~~~~ 148 (211)
T COG5648 140 KKLPNKAPI 148 (211)
T ss_pred cccCCCCCC
Confidence 887766554
No 11
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.65 E-value=4.1e-16 Score=131.52 Aligned_cols=69 Identities=39% Similarity=0.762 Sum_probs=66.1
Q ss_pred CCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2633 554 PKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622 (764)
Q Consensus 554 PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~ 622 (764)
||||+|||++|++++|..++.+||+++.++|+++||++|+.|++++|++|.++|.+.+.+|.++|+.|+
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~ 69 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPDLSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK 69 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTTSTHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcccccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999999999999999995
No 12
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.63 E-value=7.1e-16 Score=128.82 Aligned_cols=66 Identities=47% Similarity=0.832 Sum_probs=64.5
Q ss_pred CCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHH
Q psy2633 554 PKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALK 619 (764)
Q Consensus 554 PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~ 619 (764)
||||+|||++|++++|..++.+||++++++|++.||++|+.|++++|++|.++|++++++|..+|.
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~~ 66 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPDASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEMK 66 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 899999999999999999999999999999999999999999999999999999999999999873
No 13
>smart00398 HMG high mobility group.
Probab=99.62 E-value=1.5e-15 Score=127.74 Aligned_cols=70 Identities=51% Similarity=0.844 Sum_probs=68.4
Q ss_pred CCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2633 553 APKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622 (764)
Q Consensus 553 ~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~ 622 (764)
+||||+|||++|+++.|..++.+||++++++|++.||.+|+.|++++|++|.++|++++++|.++|+.|+
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y~ 70 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5999999999999999999999999999999999999999999999999999999999999999999984
No 14
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.61 E-value=1.9e-15 Score=129.91 Aligned_cols=72 Identities=35% Similarity=0.701 Sum_probs=64.5
Q ss_pred CCCCCCcchhhhhhHHHHHHHHHHh-CCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2633 551 KNAPKKPMSAYMMWFNDMREKIKKD-NPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622 (764)
Q Consensus 551 p~~PKrP~sAy~lF~~e~R~~ik~e-~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~ 622 (764)
|++||||+|||+||+.+++..++.. ++...+.++++.|+.+|+.||+++|.+|+++|++++++|.++|..|.
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~~ 73 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEWN 73 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999998 78889999999999999999999999999999999999999999984
No 15
>KOG0381|consensus
Probab=99.58 E-value=7.9e-15 Score=132.04 Aligned_cols=76 Identities=46% Similarity=0.819 Sum_probs=72.5
Q ss_pred CC--CCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHH-hhhhcC
Q psy2633 550 DK--NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALK-AYKESG 625 (764)
Q Consensus 550 dp--~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~-~Y~~~~ 625 (764)
+| ++||||++||++|+.+.|..++.+||++++.+|++++|++|++|++++|++|+.+|..++++|..+|. .|+...
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~~~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~~~~ 95 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPGLSVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYKASL 95 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56 59999999999999999999999999999999999999999999999999999999999999999999 997653
No 16
>KOG0527|consensus
Probab=99.53 E-value=9.9e-15 Score=157.89 Aligned_cols=83 Identities=28% Similarity=0.516 Sum_probs=78.0
Q ss_pred cccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy2633 547 KKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGG 626 (764)
Q Consensus 547 k~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~ 626 (764)
.++.....||||||||+|++.+|.+|..+||.+.+.||+|.||.+||.|+++||.+|++.|++++..|+++++.|++++.
T Consensus 56 ~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~mHNSEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYKYRPR 135 (331)
T KOG0527|consen 56 DKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKMHNSEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYKYRPR 135 (331)
T ss_pred CCCCccccCCCcchhhhhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCcccccc
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCC
Q psy2633 627 GQD 629 (764)
Q Consensus 627 ~~~ 629 (764)
...
T Consensus 136 RKk 138 (331)
T KOG0527|consen 136 RKK 138 (331)
T ss_pred ccc
Confidence 543
No 17
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.52 E-value=3.6e-14 Score=117.93 Aligned_cols=65 Identities=45% Similarity=0.875 Sum_probs=63.6
Q ss_pred CCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHH
Q psy2633 554 PKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEAL 618 (764)
Q Consensus 554 PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em 618 (764)
||||+|||++|+++.|..++.+||++++.+|++.||.+|+.|++++|++|.++|..++.+|.+++
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~ 65 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPGLSVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999876
No 18
>KOG3248|consensus
Probab=99.17 E-value=2.7e-11 Score=127.79 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=71.2
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy2633 552 NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQ 628 (764)
Q Consensus 552 ~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~~~ 628 (764)
...|+|+||||+|++++|++|.+++--..-.+|.++||++|..||.+|.++|.++|+++++.+++.++.|.++....
T Consensus 190 phiKKPLNAFmlyMKEmRa~vvaEctlKeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WSARdNYg 266 (421)
T KOG3248|consen 190 PHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYG 266 (421)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhh
Confidence 35789999999999999999999987666889999999999999999999999999999999999999998877654
No 19
>KOG4715|consensus
Probab=98.88 E-value=2.7e-09 Score=111.98 Aligned_cols=80 Identities=33% Similarity=0.600 Sum_probs=75.5
Q ss_pred ccccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy2633 546 RKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESG 625 (764)
Q Consensus 546 kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~ 625 (764)
...+.|.+|-+|+-+||.|++..+.+|++.||.+..-+|.|+||.||+.|++++|+.|...++..|..|.+.|+.|..++
T Consensus 57 t~pkpPkppekpl~pymrySrkvWd~VkA~nPe~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~sp 136 (410)
T KOG4715|consen 57 TRPKPPKPPEKPLMPYMRYSRKVWDQVKASNPELKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHNSP 136 (410)
T ss_pred cCCCCCCCCCcccchhhHHhhhhhhhhhccCcchHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999997554
No 20
>KOG0528|consensus
Probab=98.74 E-value=3.1e-09 Score=117.52 Aligned_cols=80 Identities=29% Similarity=0.447 Sum_probs=74.0
Q ss_pred cCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy2633 549 KDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQ 628 (764)
Q Consensus 549 kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~~~ 628 (764)
.-++..||||||||.|.++.|.+|.+.+|++....|+|+||-+||.|+-.+|++|.+.-++.-..|....+.||+++.+.
T Consensus 321 ss~PHIKRPMNAFMVWAkDERRKILqA~PDMHNSnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~PdYrYkPRPK 400 (511)
T KOG0528|consen 321 SSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKYPDYRYKPRPK 400 (511)
T ss_pred CCCccccCCcchhhcccchhhhhhhhcCccccccchhHHhcccccccccccccchHHHHHHHHHhhhccCcccccCCCCC
Confidence 34567899999999999999999999999999999999999999999999999999988888889999999999887653
No 21
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=98.43 E-value=9.5e-07 Score=75.59 Aligned_cols=77 Identities=17% Similarity=0.293 Sum_probs=64.3
Q ss_pred CCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q psy2633 553 APKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQDS 630 (764)
Q Consensus 553 ~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~~~~~ 630 (764)
.|..|.+|--+|.+..+....+.+|.....+ .+.+...|++|++.+|-+|+.+|++++.+|+++|.+|+..++...+
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~dr~K~-~kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~~~~~~~~ 79 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRNDRKKA-LKAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRSAPADANS 79 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTSTHHHH-HHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-CCCTTTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHhHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 4778888899999999999999999988877 5599999999999999999999999999999999999987766543
No 22
>KOG2746|consensus
Probab=97.98 E-value=5.9e-06 Score=95.24 Aligned_cols=71 Identities=28% Similarity=0.496 Sum_probs=66.6
Q ss_pred cccCCCCCCCcchhhhhhHHHHH--HHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHH
Q psy2633 547 KKKDKNAPKKPMSAYMMWFNDMR--EKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEA 617 (764)
Q Consensus 547 k~kdp~~PKrP~sAy~lF~~e~R--~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~e 617 (764)
.+.+....+|||+||++|++.+| ..+...||+..++-|+++||++|-.|.+.||+.|.++|.+.|+.|-++
T Consensus 175 nkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn~DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ahfka 247 (683)
T KOG2746|consen 175 NKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPNQDNRTISKILGEWWYTLGPNEKQKYHDLAFQVKEAHFKA 247 (683)
T ss_pred CcCcchhhhhhhHHHHHHHhhcCCccchhccCccccchhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHHhhh
Confidence 44666788999999999999999 999999999999999999999999999999999999999999999876
No 23
>PF14470 bPH_3: Bacterial PH domain
Probab=96.53 E-value=0.016 Score=51.52 Aligned_cols=76 Identities=21% Similarity=0.412 Sum_probs=60.9
Q ss_pred eeeeeec----CceeEEEecCCceeeeccCC-----eE-EecCCeeEEEEEeecCccceEeEEEEEcCCceEEEeccchh
Q psy2633 341 AVTCSYK----AAAGYIYPLERGFIFIHKPP-----IH-IRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKE 410 (764)
Q Consensus 341 ~V~cs~k----a~~G~LyPL~~~lifl~KPp-----~~-I~~~eIe~V~feR~~~~~rtFDm~i~~K~~~~~~Fs~I~~e 410 (764)
.+.|.++ ...|.|+.|++=|+|+.+.+ +. |+|++|.+|++..+-.. .+ +.|.+ ++..++|.+|++.
T Consensus 10 ~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~-~~--i~i~~-~~~~~~i~~i~k~ 85 (96)
T PF14470_consen 10 VAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILG-GK--ITIET-NGEKIKIDNIQKG 85 (96)
T ss_pred EEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccc-cE--EEEEE-CCEEEEEEEcCHH
Confidence 4667777 88999999999999986543 22 89999999999754322 22 66666 7889999999999
Q ss_pred hHhhHHHHHh
Q psy2633 411 EYGKLFDFIR 420 (764)
Q Consensus 411 E~~~L~~~l~ 420 (764)
....+.++++
T Consensus 86 ~~~~~~~~i~ 95 (96)
T PF14470_consen 86 DVKEFYEYIK 95 (96)
T ss_pred HHHHHHHHHh
Confidence 9999999886
No 24
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=96.44 E-value=0.0075 Score=60.09 Aligned_cols=48 Identities=21% Similarity=0.473 Sum_probs=42.9
Q ss_pred chhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHH
Q psy2633 558 MSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNK 609 (764)
Q Consensus 558 ~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~ 609 (764)
-+||+-|+.+.|. .|.+++..|+....+.+|..|++.+|..|..++-.
T Consensus 83 nnaYLNFLReFRr----kh~~L~p~dlI~~AAraW~rLSe~eK~rYrr~~~~ 130 (183)
T PF06382_consen 83 NNAYLNFLREFRR----KHCGLSPQDLIQRAARAWCRLSEAEKNRYRRMAPS 130 (183)
T ss_pred chHHHHHHHHHHH----HccCCCHHHHHHHHHHHHHhCCHHHHHHHHhhcch
Confidence 4789999999875 56799999999999999999999999999997643
No 25
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=96.37 E-value=0.0053 Score=61.32 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=41.5
Q ss_pred CCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccC
Q psy2633 551 KNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVS 596 (764)
Q Consensus 551 p~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls 596 (764)
|.+..|-+|||..|+++.-++||+.||+++.+|.-+.++..|+..+
T Consensus 119 PEKRqR~psaYn~f~k~ei~rik~~~p~ishkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 119 PEKRQRVPSAYNRFMKEEIQRIKAENPDISHKEAFSAAAKNWAHFP 164 (170)
T ss_pred ccccCCCchhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhCc
Confidence 4445577899999999999999999999999999999999998765
No 26
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=96.03 E-value=0.0049 Score=62.96 Aligned_cols=69 Identities=22% Similarity=0.381 Sum_probs=63.5
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2633 552 NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKA 620 (764)
Q Consensus 552 ~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~ 620 (764)
.+|+.|.-+|.-+-.+.|+++...+|..+..+++++++..|++|++..|.+|.+.+..++..|...|+.
T Consensus 142 ~~~~~~~~~~~e~~~~~r~~~~~~~~~~~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~~~ 210 (211)
T COG5648 142 LPNKAPIGPFIENEPKIRPKVEGPSPDKALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYPE 210 (211)
T ss_pred cCCCCCCchhhhccHHhccccCCCCcchhhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhccc
Confidence 467788888889999999999999999999999999999999999999999999999999999887753
No 27
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=95.03 E-value=0.071 Score=48.44 Aligned_cols=72 Identities=25% Similarity=0.413 Sum_probs=60.9
Q ss_pred ccceEEEecCceeeeeCCCCceEEecCCCcceeEEEEe----eCceeEEEEeeC--CceEEecCCChhhHHHHHHHHHHh
Q psy2633 19 CPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKL----VGTWALRIFLKN--GSLHRFAGFKETEIDKICSFFKTN 92 (764)
Q Consensus 19 ~~G~lk~~~~g~~~k~~~~g~~~~i~~~di~~~~w~r~----~~~~~l~i~~~~--~~~~~f~Gf~~~d~~~l~~~~~~~ 92 (764)
..|-|-....+|.|=-.+ -++.|+-+||..+...|+ .|.+-|.|.+|+ +..+.|.+...++++.|.+|++++
T Consensus 11 ~~g~L~pl~~~l~f~~~k--P~~~i~~~dI~~v~feRv~~~~~ktFDl~v~~k~~~~~~~~fs~I~~~e~~~l~~~l~~~ 88 (95)
T PF08512_consen 11 NEGFLYPLEKCLLFGLEK--PPFVIPLDDIESVEFERVSSFSSKTFDLVVILKDYEGPPHEFSSIDREEYDNLKDFLKSK 88 (95)
T ss_dssp EEEEEEEESSEEEEECSS--S-EEEEGGGEEEEEEE--ESSSSSEEEEEEEETT-TS-EEEEEEEEGGGHHHHHHHHHHC
T ss_pred cCEEEEEccceEEEecCC--CeEEEEhhHeeEEEEEecccCcceEEEEEEEEecCCCCcEEEeeECHHHHHHHHHHHHHC
Confidence 689999999999993222 368999999999999997 299999999998 899999999999999999999976
No 28
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.20 E-value=0.059 Score=44.11 Aligned_cols=40 Identities=15% Similarity=0.361 Sum_probs=36.7
Q ss_pred chhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCH
Q psy2633 558 MSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSS 597 (764)
Q Consensus 558 ~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~ 597 (764)
++.|-+|.+..|+.|.+.||++...-+...++.+||+.+.
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk~~~sKl~~l~~AKwrEF~~ 52 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPKAPMSKLMMLLQAKWREFQE 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999999998654
No 29
>KOG1189|consensus
Probab=91.47 E-value=0.4 Score=57.15 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=46.7
Q ss_pred CHHHHHHHHhhhhhhccCCcHHHHHHHHHHHhcceeeccCC-CcccCCCcceeeeeecCceeEEEecCCceee
Q psy2633 291 SEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPG-SFRGHTGTSAVTCSYKAAAGYIYPLERGFIF 362 (764)
Q Consensus 291 ~~e~l~~k~~~kL~~~~~g~~~ev~~~~~k~l~~~ki~~P~-~F~s~~g~~~V~cs~ka~~G~LyPL~~~lif 362 (764)
..|+.++..+.+|+..+..++..| .++-.......+..+. +|.|.+...+|.|. ...++|.-|...=+|
T Consensus 710 ~~EQ~Er~rr~~ln~~FksF~~kv-~~~~~~~~efd~pfr~lGF~GvP~rssv~i~--pTs~cLV~LtE~P~~ 779 (960)
T KOG1189|consen 710 EQEQEERDRRAKLNMAFKSFAEKV-AEATESELEFDVPFRELGFNGVPFRSSVFIQ--PTSSCLVNLTEWPFF 779 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhhccceeeccchhhcCcCCCCccceeeee--cchhhhhccccCCce
Confidence 345555666778999998777776 6677777888886665 78887777765554 555566666554444
No 30
>PF14470 bPH_3: Bacterial PH domain
Probab=90.28 E-value=1.4 Score=38.93 Aligned_cols=74 Identities=22% Similarity=0.346 Sum_probs=64.4
Q ss_pred ccccceEEEecCceeeeeCC---CCceEEecCCCcceeEEEEeeCceeEEEEeeCCceEEecCCChhhHHHHHHHHHH
Q psy2633 17 ALCPGKLKITDQNIVFKNKK---TGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKT 91 (764)
Q Consensus 17 ~~~~G~lk~~~~g~~~k~~~---~g~~~~i~~~di~~~~w~r~~~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~ 91 (764)
...+|.|-+++.-|.+...+ +.....|+-++|.++.|.+...+..|.|.+ ++..++|.-+...+++.+..++++
T Consensus 20 ~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~-~~~~~~i~~i~k~~~~~~~~~i~~ 96 (96)
T PF14470_consen 20 TSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIET-NGEKIKIDNIQKGDVKEFYEYIKE 96 (96)
T ss_pred cCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEE-CCEEEEEEEcCHHHHHHHHHHHhC
Confidence 45789999999999998765 246799999999999999988888899998 888899999999999999888763
No 31
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.50 E-value=0.3 Score=51.76 Aligned_cols=12 Identities=33% Similarity=0.764 Sum_probs=7.9
Q ss_pred CCCcCCCCCCCC
Q psy2633 474 ESTDEDFNPDQA 485 (764)
Q Consensus 474 ee~Dedf~~~~~ 485 (764)
+++|++|+.+++
T Consensus 38 ee~D~ef~~~~~ 49 (240)
T PF05764_consen 38 EEDDEEFESEEE 49 (240)
T ss_pred cCCCccccCCCc
Confidence 456888876543
No 32
>KOG1832|consensus
Probab=88.88 E-value=0.25 Score=59.59 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=17.9
Q ss_pred eeeeeeeeeeeeeEecceEEEEeCC-eeeEEee
Q psy2633 101 ELSVRGWNWGGTKFIGNVLSFDVNN-TTAFEIP 132 (764)
Q Consensus 101 e~~~~G~NwG~~~~~~~~l~f~v~~-k~~feip 132 (764)
+||..-.||-.+.=....++|-.+= .-.|.||
T Consensus 608 ~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP 640 (1516)
T KOG1832|consen 608 ELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIP 640 (1516)
T ss_pred HHHhcCccccccCcchHHHHHHHhheeeeEecc
Confidence 5777778887775444444333321 3455666
No 33
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=87.96 E-value=0.91 Score=46.94 Aligned_cols=57 Identities=16% Similarity=0.295 Sum_probs=43.3
Q ss_pred cccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHH
Q psy2633 547 KKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNK 609 (764)
Q Consensus 547 k~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~ 609 (764)
++..+..+|||+++||+|..-.- .-.|+....+++..|+..|..= --|..|.-.|+.
T Consensus 37 ~~~~~~~~kr~lN~Fm~FRsyy~----~~~~~~~Qk~~S~~l~~lW~~d--p~k~~W~l~ak~ 93 (201)
T PF04769_consen 37 RKRSPEKAKRPLNGFMAFRSYYS----PIFPPLPQKELSGILTKLWEKD--PFKNKWSLMAKA 93 (201)
T ss_pred ccccccccccchhHHHHHHHHHH----hhcCCcCHHHHHHHHHHHHhCC--ccHhHHHHHhhh
Confidence 34456678999999999965554 5567889999999999999963 336667766643
No 34
>KOG0526|consensus
Probab=85.91 E-value=0.7 Score=53.30 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=40.8
Q ss_pred CCceeeeeee-eeeeeeeEecceEEEEeC-CeeeEEeecccccccc----CCCceEEEEe
Q psy2633 97 VPEKELSVRG-WNWGGTKFIGNVLSFDVN-NTTAFEIPLRDVSQCT----TGKNEVTVEF 150 (764)
Q Consensus 97 l~~~e~~~~G-~NwG~~~~~~~~l~f~v~-~k~~feip~~~is~~~----~~Knev~lef 150 (764)
+...-|.++| -|-|++.+..+.|.|... +--+|.||.++|..+. +.++.+-|-.
T Consensus 7 fn~iyl~~~G~~~~G~lkit~~gi~~K~~~ggk~~~v~~sei~~~~w~k~~r~~~LrV~t 66 (615)
T KOG0526|consen 7 FNDIYLEVSGHLKPGTLKITESGIGFKNSKGGKVVTVPASEIDKVKWQKGVRGYGLRVFT 66 (615)
T ss_pred cCceEEecccccccceEEEccCceeEeeCCCCceEEeehHHhhhhhhhhhccccceEEEc
Confidence 3445567777 899999999999999864 3378999999998875 3555554444
No 35
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=84.06 E-value=2 Score=37.88 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=43.2
Q ss_pred cccceEEEecCc--eeeeeCCCC--ceEEecCCCcceeEEEEee-CceeEEEEeeCC
Q psy2633 18 LCPGKLKITDQN--IVFKNKKTG--KVEQINGPDLDFVNWQKLV-GTWALRIFLKNG 69 (764)
Q Consensus 18 ~~~G~lk~~~~g--~~~k~~~~g--~~~~i~~~di~~~~w~r~~-~~~~l~i~~~~~ 69 (764)
..+|.|-|+... +.|....++ .+++|+-.+|...+-+.-+ -..+|||.++++
T Consensus 11 K~~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~ 67 (79)
T PF08567_consen 11 KKDGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGSPKVMLKIVLKDD 67 (79)
T ss_dssp TEEEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTSSTEEEEEEETTS
T ss_pred cCCcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCCcceEEEEEEecC
Confidence 467999999999 999986543 3499999999999998865 899999999987
No 36
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=83.76 E-value=1.2 Score=42.41 Aligned_cols=49 Identities=16% Similarity=0.390 Sum_probs=42.0
Q ss_pred CCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHH
Q psy2633 550 DKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSK 598 (764)
Q Consensus 550 dp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~e 598 (764)
|..+-||-.-||.-|...+-+.|+.+|||+..+.+-.+|-.+|..-+++
T Consensus 69 drHPErR~KAAy~afeE~~Lp~lK~E~PgLrlsQ~kq~l~K~w~KSPeN 117 (122)
T PF06244_consen 69 DRHPERRMKAAYKAFEERRLPELKEENPGLRLSQYKQMLWKEWQKSPEN 117 (122)
T ss_pred CCCcchhHHHHHHHHHHHHhHHHHhhCCCchHHHHHHHHHHHHhcCCCC
Confidence 3334456668999999999999999999999999999999999877653
No 37
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=82.81 E-value=19 Score=37.81 Aligned_cols=149 Identities=15% Similarity=0.226 Sum_probs=103.8
Q ss_pred CccccceEEEecCceeeeeCCCCceEEecCCCcceeEE--------EEeeCceeEEEEeeCCceEEecCCChhhHHHHHH
Q psy2633 16 GALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNW--------QKLVGTWALRIFLKNGSLHRFAGFKETEIDKICS 87 (764)
Q Consensus 16 g~~~~G~lk~~~~g~~~k~~~~g~~~~i~~~di~~~~w--------~r~~~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~ 87 (764)
+.+..|++-|+...|.+... +...+|+-+.|..+.- ..+.....+++...+|..+-.-..... ..+..
T Consensus 23 ~~W~~~rIiLs~~rlvl~~~--~~k~~Ipls~I~Di~~~~~~~~~~~~~~~~~si~~~~~~~~~v~~i~~~~~--~~~e~ 98 (221)
T PF04283_consen 23 GKWVKGRIILSNDRLVLAFN--DGKITIPLSSIEDIGVRLPPNQLLAFFSDYVSIKYKSDEGERVILISPEDS--KTIEK 98 (221)
T ss_pred CCcEEEEEEEecCEEEEEcC--CCeEEEecceeEecccccCccccccccCceEEEEEecCCCcEEEEEEcCCc--ccHHH
Confidence 46788999999999999973 3455999999988776 333344555555543433322222322 56777
Q ss_pred HHHHhcCCCCCceee-----eeee--------eeeeeeeEecceEEEEeCCeeeEEeecccccccc------CCCceEEE
Q psy2633 88 FFKTNFKIDVPEKEL-----SVRG--------WNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQCT------TGKNEVTV 148 (764)
Q Consensus 88 ~~~~~~~~~l~~~e~-----~~~G--------~NwG~~~~~~~~l~f~v~~k~~feip~~~is~~~------~~Knev~l 148 (764)
|....|++-|..+.+ .++| |==|.+.|....+.|...++..+.|++++|..+- .|+.--+|
T Consensus 99 F~~~lf~~lL~~~~v~v~hpAi~GGvV~~d~~Wekg~l~v~~~~i~~~~~~~~~~~I~l~~V~~ve~~~r~V~g~~r~VL 178 (221)
T PF04283_consen 99 FETKLFRALLNGKEVLVKHPAIVGGVVQQDAEWEKGKLKVTKKGIWFASSSGQFVSIDLDDVGDVEREERTVNGKERPVL 178 (221)
T ss_pred HHHHHHHHhhCCeEEEEECCceecceeccCCccccceEEEeccceEEEecCCceeEEEecccceeeeeeeecCCccceEE
Confidence 777777777766554 2222 5568999999999999999999999999998873 37777888
Q ss_pred EecCCCCCccceEEEEEecCCC
Q psy2633 149 EFHPNDEAAESLIEMRFYIPTN 170 (764)
Q Consensus 149 ef~~~d~~~d~L~emRf~vP~~ 170 (764)
++.+-++ .+-|+=-+|+|+.
T Consensus 179 ~I~H~~~--g~sVtSyi~~~~~ 198 (221)
T PF04283_consen 179 EIEHVED--GESVTSYISIGPE 198 (221)
T ss_pred EEEEecC--CcEEEEEEecCCh
Confidence 8855333 4567777787754
No 38
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.63 E-value=11 Score=37.40 Aligned_cols=88 Identities=19% Similarity=0.337 Sum_probs=66.5
Q ss_pred CcceeEEEEeeCceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCC-----CCceeeeeee---------------
Q psy2633 47 DLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKID-----VPEKELSVRG--------------- 106 (764)
Q Consensus 47 di~~~~w~r~~~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~-----l~~~e~~~~G--------------- 106 (764)
++-.++|.+.+|++-|||++-+- .|..-+|-+.++..+...+.+. -+.=|+|..|
T Consensus 24 ELv~ve~~~~~~~~~lrI~id~~-----g~v~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGldRpL~~~~~f~r~~ 98 (153)
T COG0779 24 ELVDVEFVKEGRDSVLRIYIDKE-----GGVTLDDCADVSRAISALLDVEDPIEGAYFLEVSSPGLDRPLKTAEHFARFI 98 (153)
T ss_pred EEEEEEEEEcCCCcEEEEEeCCC-----CCCCHHHHHHHHHHHHHHhccCCcccccEEEEeeCCCCCCCcCCHHHHHHhc
Confidence 56789999999999999998654 7788899999999988888743 2233455555
Q ss_pred ---------------eee-ee-eeEecceEEEEeCCeeeEEeecccccccc
Q psy2633 107 ---------------WNW-GG-TKFIGNVLSFDVNNTTAFEIPLRDVSQCT 140 (764)
Q Consensus 107 ---------------~Nw-G~-~~~~~~~l~f~v~~k~~feip~~~is~~~ 140 (764)
-+| |. +.+++..+++.+++|+ .+||+++|+.++
T Consensus 99 G~~Vkv~l~~~~~~~k~~~G~i~~~d~~~v~~~~~~k~-v~Ip~~~i~kAr 148 (153)
T COG0779 99 GEKVKVKLRLPIEGRKKFEGKIVAVDGETVTLEVDGKE-VEIPFSDIAKAR 148 (153)
T ss_pred CcEEEEEEecccCCceEEEEEEEEEcCCeEEEEECCEE-EEEEcccchhhe
Confidence 223 22 2346677888899998 999999998865
No 39
>COG5165 POB3 Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=79.92 E-value=5.9 Score=43.97 Aligned_cols=53 Identities=17% Similarity=0.397 Sum_probs=49.9
Q ss_pred eEEecCCCcceeEEEEee------CceeEEEEeeCCceEEecCCChhhHHHHHHHHHHh
Q psy2633 40 VEQINGPDLDFVNWQKLV------GTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTN 92 (764)
Q Consensus 40 ~~~i~~~di~~~~w~r~~------~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~ 92 (764)
++.|+-+||..+.++|++ |.|-|.+.+.+++-|+|.|....++..|.+||+..
T Consensus 377 tl~l~~sdis~V~~SRig~ss~~arTFDlt~~lrs~~sytF~nisk~Eq~aLeqfl~sK 435 (508)
T COG5165 377 TLRLDLSDISLVEFSRIGLSSMQARTFDLTLFLRSPGSYTFNNISKDEQGALEQFLHSK 435 (508)
T ss_pred eEEeecccceEEEEeecccchhhhceeeEEEEEecCCceeecCcCHHHHHHHHHHHhcc
Confidence 788999999999999986 99999999999999999999999999999999854
No 40
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=79.54 E-value=3.4 Score=48.70 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=12.3
Q ss_pred eccCCeEEecCCeeEEEE
Q psy2633 363 IHKPPIHIRFEEIATVNF 380 (764)
Q Consensus 363 l~KPp~~I~~~eIe~V~f 380 (764)
+-+|+++|.-=.|+++.+
T Consensus 862 f~rp~vhIntvpvesld~ 879 (1001)
T COG5406 862 FYRPLVHINTVPVESLDK 879 (1001)
T ss_pred ccCCcceeccccHHHHHH
Confidence 347888877666766665
No 41
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=78.94 E-value=12 Score=43.24 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhh
Q psy2633 582 TEIAKKGGELWK 593 (764)
Q Consensus 582 ~eisK~lge~Wk 593 (764)
..+...++..|+
T Consensus 115 ~~~~nv~srL~n 126 (432)
T PF09073_consen 115 KALNNVVSRLFN 126 (432)
T ss_pred hHHHHHHHHHhc
Confidence 346777888887
No 42
>PF07622 DUF1583: Protein of unknown function (DUF1583); InterPro: IPR011475 Most of the Rhodopirellula baltica hypothetical proteins that have this domain also match PF07619 from PFAM.
Probab=74.38 E-value=17 Score=41.09 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=39.2
Q ss_pred CCceeeeeeeeeeeeeeEecceEEEEeCCeeeEEeeccccccccCC
Q psy2633 97 VPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQCTTG 142 (764)
Q Consensus 97 l~~~e~~~~G~NwG~~~~~~~~l~f~v~~k~~feip~~~is~~~~~ 142 (764)
.-..-|-..+||-..+.+.|..+....|++++++-||..=+.-+-|
T Consensus 82 ~~~~~l~~~~wN~v~l~~~g~~v~l~LN~~~i~~~~~~~~~~~~fG 127 (399)
T PF07622_consen 82 SPTLPLKVNAWNRVRLQRRGDKVQLHLNGQLIYERPLEPGSSRQFG 127 (399)
T ss_pred CCCCCCCccccceEEEEEeCCEEEEEeCCceeEecccCCCCCCcce
Confidence 3455678899999999999999999999999999999987654434
No 43
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=67.23 E-value=21 Score=44.64 Aligned_cols=17 Identities=6% Similarity=0.122 Sum_probs=10.0
Q ss_pred CCCCcchhhhhhHHHHH
Q psy2633 553 APKKPMSAYMMWFNDMR 569 (764)
Q Consensus 553 ~PKrP~sAy~lF~~e~R 569 (764)
+++...-.|=.++++.+
T Consensus 243 ~~~~~~ddYD~~vrel~ 259 (840)
T PF04147_consen 243 KEEEKDDDYDKLVRELA 259 (840)
T ss_pred cCcccccHHHHHHHHhc
Confidence 34444567777766554
No 44
>PRK14646 hypothetical protein; Provisional
Probab=66.66 E-value=43 Score=33.33 Aligned_cols=89 Identities=12% Similarity=0.103 Sum_probs=61.8
Q ss_pred CcceeEEEEeeCceeEEEEeeCC-ceEEecCCChhhHHHHHHHHHHhcCCC-C-C---ceeee-----------------
Q psy2633 47 DLDFVNWQKLVGTWALRIFLKNG-SLHRFAGFKETEIDKICSFFKTNFKID-V-P---EKELS----------------- 103 (764)
Q Consensus 47 di~~~~w~r~~~~~~l~i~~~~~-~~~~f~Gf~~~d~~~l~~~~~~~~~~~-l-~---~~e~~----------------- 103 (764)
+|-.+.|.+-++.+-|||++-.- + .|..-+|-+.++..+...+... + . .=|+|
T Consensus 23 eLvdve~~~~~~~~~LrV~IDk~~g----~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGldRpL~~~~df~r~ 98 (155)
T PRK14646 23 KICSLNIQTNQNPIVIKIIIKKTNG----DDISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVSDELTSERDFKTF 98 (155)
T ss_pred EEEEEEEEeCCCCeEEEEEEECCCC----CCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCCCcCCCHHHHHHh
Confidence 56678999999999999998431 1 2578889999999998888643 1 1 11222
Q ss_pred --------eeeeeeeeee-------EecceEEEEeCCeeeEEeecccccccc
Q psy2633 104 --------VRGWNWGGTK-------FIGNVLSFDVNNTTAFEIPLRDVSQCT 140 (764)
Q Consensus 104 --------~~G~NwG~~~-------~~~~~l~f~v~~k~~feip~~~is~~~ 140 (764)
++.-..|.-. +++..+++.++|++ ++||+++|..++
T Consensus 99 ~G~~v~V~l~~~~~~~~~~~G~L~~~~~~~v~l~~~g~~-~~i~~~~I~ka~ 149 (155)
T PRK14646 99 KGFPVNVELNQKNSKIKFLNGLLYEKSKDYLAINIKGKI-KKIPFNEVLKIS 149 (155)
T ss_pred CCCEEEEEEecCcCCeEEEEEEEEEEeCCEEEEEECCEE-EEEEHHHeeeEE
Confidence 2222233333 46778999888775 789999998875
No 45
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=61.82 E-value=11 Score=31.49 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=29.8
Q ss_pred eeeeecC----ceeEEEecCCceeeec-c---C--CeEEecCCeeEEE
Q psy2633 342 VTCSYKA----AAGYIYPLERGFIFIH-K---P--PIHIRFEEIATVN 379 (764)
Q Consensus 342 V~cs~ka----~~G~LyPL~~~lifl~-K---P--p~~I~~~eIe~V~ 379 (764)
..|.+.. ..|.||-+++-|.|.. . + .+.|+|.+|..|.
T Consensus 19 ~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~ 66 (69)
T PF02893_consen 19 YSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIE 66 (69)
T ss_dssp EEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEE
T ss_pred EEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEE
Confidence 4566666 7999999999999976 2 2 2558999999986
No 46
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=60.96 E-value=16 Score=37.73 Aligned_cols=46 Identities=15% Similarity=0.427 Sum_probs=40.3
Q ss_pred CCCHHHHHH-HHHHhhhccCHHHHHHHHHHHHH-HHHHHHHHHHhhhh
Q psy2633 578 GISFTEIAK-KGGELWKTVSSKEKAEYDEKVNK-AKEDYNEALKAYKE 623 (764)
Q Consensus 578 ~~s~~eisK-~lge~Wk~Ls~eeK~~Y~~kA~~-~k~rY~~em~~Y~~ 623 (764)
-+.+..+++ .||..|+.+++++|+.|.+..+. ....|-..+..|..
T Consensus 63 ~~Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~~tY~~~l~~y~~ 110 (198)
T TIGR03481 63 AFDLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQFKSYAG 110 (198)
T ss_pred hCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 567888887 67999999999999999998887 77889999999964
No 47
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=60.90 E-value=13 Score=30.39 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=29.7
Q ss_pred eeeeec---CceeEEEecCCceeeec-c--C---CeEEecCCeeEEE
Q psy2633 342 VTCSYK---AAAGYIYPLERGFIFIH-K--P---PIHIRFEEIATVN 379 (764)
Q Consensus 342 V~cs~k---a~~G~LyPL~~~lifl~-K--P---p~~I~~~eIe~V~ 379 (764)
..|.+. ...|.||.+++.|.|.. . . .+.|++.+|.+|+
T Consensus 12 ~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~ 58 (61)
T smart00568 12 YSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIE 58 (61)
T ss_pred EEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEE
Confidence 557775 57999999999999965 2 2 3458999999886
No 48
>PRK14630 hypothetical protein; Provisional
Probab=60.54 E-value=61 Score=31.80 Aligned_cols=88 Identities=14% Similarity=0.153 Sum_probs=57.8
Q ss_pred CcceeEEEEeeCceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCCCC---ceeeeeeeeee--------------
Q psy2633 47 DLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVP---EKELSVRGWNW-------------- 109 (764)
Q Consensus 47 di~~~~w~r~~~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~l~---~~e~~~~G~Nw-------------- 109 (764)
+|-.++|.+-++++-|||++-.. +|..-+|-+.++..+.....-.+. .=|+|..|.+.
T Consensus 24 eLvdve~~~~~~~~~lrV~Id~~-----~gV~idDC~~vSr~i~~~ld~~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~ 98 (143)
T PRK14630 24 EIIEINTFRNRNEGKIQIVLYKK-----DSFGVDTLCDLHKMILLILEAVLKYNFSLEISTPGINRKIKSDREFKIFEGK 98 (143)
T ss_pred EEEEEEEEecCCCcEEEEEEECC-----CCCCHHHHHHHHHHHHHHhcccCCCCeEEEEeCCCCCCcCCCHHHHHHhCCC
Confidence 46678898888888899998532 567889999999888666543222 23455555432
Q ss_pred ------------eee-eEecceEEEEeCCeeeEEeecccccccc
Q psy2633 110 ------------GGT-KFIGNVLSFDVNNTTAFEIPLRDVSQCT 140 (764)
Q Consensus 110 ------------G~~-~~~~~~l~f~v~~k~~feip~~~is~~~ 140 (764)
|.+ .++++.++|.++++ .+.||+++|+.++
T Consensus 99 ~v~V~l~~~~~~G~L~~~~d~~i~l~~~~~-~~~i~~~~I~ka~ 141 (143)
T PRK14630 99 KIKLMLDNDFEEGFILEAKADSFIFKTDSK-EVNVLYSDVKKAK 141 (143)
T ss_pred EEEEEEcCcceEEEEEEEeCCEEEEEECCE-EEEEEhHhcceEE
Confidence 332 23556777777665 3777888777654
No 49
>KOG2002|consensus
Probab=59.00 E-value=26 Score=43.70 Aligned_cols=14 Identities=43% Similarity=0.536 Sum_probs=10.5
Q ss_pred CCCcccccccccCC
Q psy2633 654 PHKVKSKEFIESNG 667 (764)
Q Consensus 654 ~~~~kske~i~~~d 667 (764)
..+.+|++++++++
T Consensus 945 ~~k~~sk~~~~t~e 958 (1018)
T KOG2002|consen 945 RRKPKSKAFISTSE 958 (1018)
T ss_pred ccchhhhhhhcccc
Confidence 34678888888777
No 50
>KOG3223|consensus
Probab=58.73 E-value=7.1 Score=39.82 Aligned_cols=50 Identities=16% Similarity=0.404 Sum_probs=43.4
Q ss_pred CCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHH
Q psy2633 555 KKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKV 607 (764)
Q Consensus 555 KrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA 607 (764)
||-.-||.-|-..+-+.|+.+||++..++.-.+|-.+|+.-|++ |+.+.+
T Consensus 166 kRmrAA~~afEe~~LPrLK~e~P~lrlsQ~Kqll~Kew~KsPDN---P~Nq~~ 215 (221)
T KOG3223|consen 166 KRMRAAFKAFEEARLPRLKKENPGLRLSQYKQLLKKEWQKSPDN---PFNQAA 215 (221)
T ss_pred HHHHHHHHHHHHhhchhhhhcCCCccHHHHHHHHHHHHhhCCCC---hhhHHh
Confidence 55667899999999999999999999999999999999988876 666554
No 51
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=57.49 E-value=7.4 Score=41.50 Aligned_cols=12 Identities=8% Similarity=0.340 Sum_probs=7.2
Q ss_pred ecCCeeEEEEEe
Q psy2633 371 RFEEIATVNFAR 382 (764)
Q Consensus 371 ~~~eIe~V~feR 382 (764)
||.+-..|+-+|
T Consensus 122 pl~da~C~EC~R 133 (314)
T PF06524_consen 122 PLQDAVCIECER 133 (314)
T ss_pred cCCCcEeeeeec
Confidence 555556666666
No 52
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=56.59 E-value=51 Score=29.06 Aligned_cols=55 Identities=22% Similarity=0.342 Sum_probs=42.6
Q ss_pred eeeecCceeEEEecCCc--eeeecc----CC-eEEecCCeeEEEEEeecCccceEeEEEEEcCC
Q psy2633 343 TCSYKAAAGYIYPLERG--FIFIHK----PP-IHIRFEEIATVNFARSGGSTRSFDFEIELKSG 399 (764)
Q Consensus 343 ~cs~ka~~G~LyPL~~~--lifl~K----Pp-~~I~~~eIe~V~feR~~~~~rtFDm~i~~K~~ 399 (764)
.|.||-..|.||.+++. +.|..+ |. +-|+|.+|...--+- .+.---=|.|+++++
T Consensus 6 ~~~yKK~~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp--~~s~Kv~Lki~~~~~ 67 (79)
T PF08567_consen 6 AASYKKKDGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSP--EGSPKVMLKIVLKDD 67 (79)
T ss_dssp EEEETTEEEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE----TTSSTEEEEEEETTS
T ss_pred eEEEEcCCcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCC--CCCcceEEEEEEecC
Confidence 58999999999999999 999875 54 669999999865532 345556677888865
No 53
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=54.99 E-value=26 Score=29.59 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=42.3
Q ss_pred cCCeEEecCCeeEEEEEee--cCccceEeEEEEEcCCce--EEEeccchhhHhhHHHHH
Q psy2633 365 KPPIHIRFEEIATVNFARS--GGSTRSFDFEIELKSGVL--HTFSSIEKEEYGKLFDFI 419 (764)
Q Consensus 365 KPp~~I~~~eIe~V~feR~--~~~~rtFDm~i~~K~~~~--~~Fs~I~~eE~~~L~~~l 419 (764)
+-..+|++..|..|...++ +...+.-++.|.+.++.. ..+..++.++...|.+||
T Consensus 22 ~~~~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~~~~~~~~~i~~~~~~~a~~i~~~i 80 (80)
T PF03703_consen 22 KRTTIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTAGGSGEKIEIPFLSIEDAEEIYDWI 80 (80)
T ss_pred EEEEEEEhhHeEEEEEEcCHHHHhCccEEEEEEECCCCCceeEEecCCHHHHHHHHhhC
Confidence 3456799999999999773 234566778888876553 788889999999998885
No 54
>PRK14637 hypothetical protein; Provisional
Probab=54.78 E-value=97 Score=30.71 Aligned_cols=89 Identities=12% Similarity=0.143 Sum_probs=59.0
Q ss_pred CCcceeEEEEeeCceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCCCC----ceeeeeee---------------
Q psy2633 46 PDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVP----EKELSVRG--------------- 106 (764)
Q Consensus 46 ~di~~~~w~r~~~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~l~----~~e~~~~G--------------- 106 (764)
=+|-.+.|.+-++++.|||++-. =.|..-+|-+.++..+.......+. .=|+|..|
T Consensus 23 ~eLvdve~~~~~~~~~lrV~ID~-----~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGldRpL~~~~~f~r~~ 97 (151)
T PRK14637 23 CKLVDLSRRVQQAQGRVRAVIYS-----AGGVGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGIERVIKNAAEFSIFV 97 (151)
T ss_pred CEEEEEEEEecCCCcEEEEEEEC-----CCCCCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCHHHHHHhC
Confidence 35678899999999999999842 1467888999999987766643221 11222222
Q ss_pred -----------eee--eee-eEecceEEEEeCCeeeEEeecccccccc
Q psy2633 107 -----------WNW--GGT-KFIGNVLSFDVNNTTAFEIPLRDVSQCT 140 (764)
Q Consensus 107 -----------~Nw--G~~-~~~~~~l~f~v~~k~~feip~~~is~~~ 140 (764)
-+| |.+ .++++.++|.+.+++ .+||+++|..++
T Consensus 98 G~~V~V~l~~~~~~~~G~L~~~~d~~v~l~~~~~~-~~i~~~~I~ka~ 144 (151)
T PRK14637 98 GETVKVWFECTGQWQVGTIAEADETCLVLTSDGVP-VTIPYVQITKAQ 144 (151)
T ss_pred CCEEEEEECCCCcEEEEEEEEEeCCEEEEEECCEE-EEEEHHHeeeEE
Confidence 123 443 346677777776654 778888887764
No 55
>KOG2393|consensus
Probab=54.24 E-value=31 Score=40.44 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHHHhhhccC
Q psy2633 578 GISFTEIAKKGGELWKTVS 596 (764)
Q Consensus 578 ~~s~~eisK~lge~Wk~Ls 596 (764)
.|++-|..-.+.++.+.|.
T Consensus 173 ~L~~EEaee~~~~r~k~~N 191 (555)
T KOG2393|consen 173 TLTAEEAEEWFMERFKVMN 191 (555)
T ss_pred hccHHHHHHHHHHhhhhHH
Confidence 4555555556666655553
No 56
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=53.06 E-value=29 Score=36.18 Aligned_cols=47 Identities=19% Similarity=0.346 Sum_probs=40.3
Q ss_pred CCCCHHHHHH-HHHHhhhccCHHHHHHHHHHHHH-HHHHHHHHHHhhhh
Q psy2633 577 PGISFTEIAK-KGGELWKTVSSKEKAEYDEKVNK-AKEDYNEALKAYKE 623 (764)
Q Consensus 577 P~~s~~eisK-~lge~Wk~Ls~eeK~~Y~~kA~~-~k~rY~~em~~Y~~ 623 (764)
|-+.+..+++ .||.-|+.+++++|+.|.+.-.. ...-|-..+..|..
T Consensus 66 p~~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tYa~~l~~y~~ 114 (211)
T PRK15117 66 PYVQVKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAYGQALAMYHG 114 (211)
T ss_pred ccCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6788889987 67999999999999999987766 56778999999964
No 57
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=50.82 E-value=27 Score=31.82 Aligned_cols=59 Identities=29% Similarity=0.389 Sum_probs=45.5
Q ss_pred cccceEEEecCceeeeeC-----------------CCCceEEecCCCcceeEEEEee-CceeEEEEeeCCceEEecCC
Q psy2633 18 LCPGKLKITDQNIVFKNK-----------------KTGKVEQINGPDLDFVNWQKLV-GTWALRIFLKNGSLHRFAGF 77 (764)
Q Consensus 18 ~~~G~lk~~~~g~~~k~~-----------------~~g~~~~i~~~di~~~~w~r~~-~~~~l~i~~~~~~~~~f~Gf 77 (764)
..+|.|.|+...|-|-.. ...+...++-++|..+.|.|.- |...|-|++.+|.-| |-.|
T Consensus 16 ~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEiF~~dg~s~-f~~F 92 (106)
T PF14844_consen 16 SIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEIFFSDGRSY-FFNF 92 (106)
T ss_dssp EEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEEEETTS-EE-EEE-
T ss_pred eEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEEEEcCCcEE-EEEc
Confidence 479999999999999754 2357889999999999999986 999999999999854 4456
No 58
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=48.98 E-value=12 Score=40.10 Aligned_cols=6 Identities=0% Similarity=0.417 Sum_probs=2.3
Q ss_pred hhhhHH
Q psy2633 561 YMMWFN 566 (764)
Q Consensus 561 y~lF~~ 566 (764)
|-.|++
T Consensus 53 FCYFC~ 58 (314)
T PF06524_consen 53 FCYFCQ 58 (314)
T ss_pred eeehhh
Confidence 333443
No 59
>PF03627 PapG_N: PapG carbohydrate binding domain; InterPro: IPR005310 PapG, the adhesin of the P-pili, is situated at the tip and is only a minor component of the whole pilus structure. A two-domain structure has been postulated for PapG; a carbohydrate binding N terminus (this domain) and chaperone binding C terminus. The carbohydrate-binding domain interacts with the receptor glycan [, ].; GO: 0030246 carbohydrate binding, 0007155 cell adhesion; PDB: 2WMP_B 3ME0_B 1J8S_A 1J8R_A.
Probab=48.89 E-value=18 Score=36.93 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=17.4
Q ss_pred eeeeeeeeeeeeeEecceEEEEeCCe
Q psy2633 101 ELSVRGWNWGGTKFIGNVLSFDVNNT 126 (764)
Q Consensus 101 e~~~~G~NwG~~~~~~~~l~f~v~~k 126 (764)
=.-++|.-|-+-.++|..++|.++++
T Consensus 119 Yff~~Gy~WD~wt~~~g~~C~~~G~~ 144 (226)
T PF03627_consen 119 YFFLNGYEWDTWTNDGGRICFYPGNT 144 (226)
T ss_dssp EEEEEEEEEEEEE---EESS--TT-E
T ss_pred EEEeccccccccccCCcceecCcchh
Confidence 37799999999999999999998854
No 60
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=48.69 E-value=28 Score=29.08 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=27.4
Q ss_pred eeeeeeeeeEecceEEEEeC--Cee--eEEeecccccccc
Q psy2633 105 RGWNWGGTKFIGNVLSFDVN--NTT--AFEIPLRDVSQCT 140 (764)
Q Consensus 105 ~G~NwG~~~~~~~~l~f~v~--~k~--~feip~~~is~~~ 140 (764)
++..+|.+-+..+.|+|... +.. .|.||+.+|..+.
T Consensus 27 ~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~ 66 (69)
T PF02893_consen 27 KIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIE 66 (69)
T ss_dssp ---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEE
T ss_pred ccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEE
Confidence 66789999999999999873 333 6999999998753
No 61
>KOG2270|consensus
Probab=48.35 E-value=8.5 Score=43.71 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=14.3
Q ss_pred hhHhhHHHHHhhcCceeee
Q psy2633 410 EEYGKLFDFIREKKLRVKN 428 (764)
Q Consensus 410 eE~~~L~~~l~~k~i~I~n 428 (764)
-...+|..|+..+|+.|+.
T Consensus 325 mDc~NVn~FF~r~gv~v~t 343 (520)
T KOG2270|consen 325 MDCNNVNDFFRRLGVAVMT 343 (520)
T ss_pred HHHHHHHHHHHHcCCeeec
Confidence 3667888888888887765
No 62
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=45.27 E-value=88 Score=30.22 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=43.9
Q ss_pred eeeeEecceEEEEeC--CeeeEEeeccccccccCCCc--------eEEEEecC----------------CCCCccceEEE
Q psy2633 110 GGTKFIGNVLSFDVN--NTTAFEIPLRDVSQCTTGKN--------EVTVEFHP----------------NDEAAESLIEM 163 (764)
Q Consensus 110 G~~~~~~~~l~f~v~--~k~~feip~~~is~~~~~Kn--------ev~lef~~----------------~d~~~d~L~em 163 (764)
|++.|....|.|.-+ ....|.|||..|+==+..+. =|.|++.. .+......+||
T Consensus 1 g~L~Vt~~~l~w~~~~~~~~G~~ipY~sI~lHAisr~~~~~~~~~~lY~qld~~~~~~~~~~~~~~~~~~~~~~~~~~El 80 (135)
T PF03517_consen 1 GTLYVTESRLIWFSNEDSSKGFSIPYPSISLHAISRDPSGSFPEPCLYLQLDSDLEEDEEGDDEDDEEDDEEDDESSVEL 80 (135)
T ss_dssp EEEEEETTEEEEEET--TTEEEEESS---SEEE--SS-S-S--S--EEEEEE----SS-SSS---S--S-S--S-SEEEE
T ss_pred CEEEEecCEEEEECCCcCCcceeecCCeEEEEEeecCCCCCCCCceEEEEEecccCccccccccccccccccccccceEE
Confidence 677788887877763 68999999999975443322 25566521 01125889999
Q ss_pred EEecCCCCCCCCCChHHHHHHHHhccccc
Q psy2633 164 RFYIPTNEIAGDTDPVEAFKDSVMNQASV 192 (764)
Q Consensus 164 Rf~vP~~~~~~~~~~~~~f~~~i~~~a~i 192 (764)
||.-+... .+.++.++++|-.-+.+
T Consensus 81 ~l~P~~~~----~~~l~~if~Als~C~~L 105 (135)
T PF03517_consen 81 RLVPSDPS----SDMLDEIFEALSECQEL 105 (135)
T ss_dssp EEEES-HH----H--HHHHHHHHHHHHH-
T ss_pred EEecCccc----chHHHHHHHHHHHHHHh
Confidence 99654321 13377888877554443
No 63
>cd00239 PapG_CBD PapG carbohydrate / receptor binding domain (CBD); PapG, the adhesin of the P-pili, is situated at the tip, mediating the attachment of uropathogenic Escherichia coli to the uroepithelium of the human kidney; PapG has a two-domain architecture: a carbohydrate binding N-terminus (this domain) and chaperone binding C-terminus (C-terminal pilin region). The carbohydrate-binding domain interacts with the receptor glycan. There are 3 PapG alleles, class I-III, which bind to different receptor isotypes, GbO3, GbO4, and GbO5, respectively.
Probab=45.20 E-value=15 Score=36.85 Aligned_cols=25 Identities=20% Similarity=0.524 Sum_probs=22.7
Q ss_pred eeeeeeeeeeeeEecceEEEEeCCe
Q psy2633 102 LSVRGWNWGGTKFIGNVLSFDVNNT 126 (764)
Q Consensus 102 ~~~~G~NwG~~~~~~~~l~f~v~~k 126 (764)
.-++|.-|-+..++|..++|.++++
T Consensus 98 yf~kGy~WDe~~~~~gr~Cf~~Ge~ 122 (194)
T cd00239 98 YFLKGYEWDEWTFDGGRTCFNPGEK 122 (194)
T ss_pred EEeccceeeeeecCCcceecCcchh
Confidence 7899999999999999999998854
No 64
>PRK14634 hypothetical protein; Provisional
Probab=44.56 E-value=1.4e+02 Score=29.67 Aligned_cols=89 Identities=11% Similarity=0.096 Sum_probs=59.3
Q ss_pred CcceeEEEEeeCceeEEEEeeC-CceEEecCCChhhHHHHHHHHHHhcCCC-C----Cceeeeeeee-------------
Q psy2633 47 DLDFVNWQKLVGTWALRIFLKN-GSLHRFAGFKETEIDKICSFFKTNFKID-V----PEKELSVRGW------------- 107 (764)
Q Consensus 47 di~~~~w~r~~~~~~l~i~~~~-~~~~~f~Gf~~~d~~~l~~~~~~~~~~~-l----~~~e~~~~G~------------- 107 (764)
+|-.+.|.+-++++.|||++-. ++ +|..-+|.+.++..+...+... + +.=|+|..|-
T Consensus 23 elvdve~~~~~~~~~lrV~ID~~~g----~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL~~~~~f~r~ 98 (155)
T PRK14634 23 ELCGIQVLTHLQPMTLQVQIRRSSG----SDVSLDDCAGFSGPMGEALEASQLLTEAYVLEISSPGIGDQLSSDRDFQTF 98 (155)
T ss_pred EEEEEEEEeCCCCcEEEEEEECCCC----CcccHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcCCCHHHHHHh
Confidence 4677889999999999999842 11 1378899999999998887743 1 1223333331
Q ss_pred -----------------e-eeee-eEecceEEEEeCCeeeEEeecccccccc
Q psy2633 108 -----------------N-WGGT-KFIGNVLSFDVNNTTAFEIPLRDVSQCT 140 (764)
Q Consensus 108 -----------------N-wG~~-~~~~~~l~f~v~~k~~feip~~~is~~~ 140 (764)
+ -|.+ .+++..+++.++++. +.||+++|+.++
T Consensus 99 ~G~~V~V~l~~~~~~~k~~~G~L~~~~~~~v~l~~~~~~-~~i~~~~I~ka~ 149 (155)
T PRK14634 99 RGFPVEVSHRDDDGSEQRLEGLLLERNEDHLQINIRGRI-KRIPRDSVISVR 149 (155)
T ss_pred CCCeEEEEEecCCCCeEEEEEEEEEEeCCEEEEEECCEE-EEEEHHHeeeEE
Confidence 1 1222 245567788877655 789999998875
No 65
>KOG0943|consensus
Probab=43.87 E-value=20 Score=45.45 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=13.6
Q ss_pred eeecCceeEEEecCCceee
Q psy2633 344 CSYKAAAGYIYPLERGFIF 362 (764)
Q Consensus 344 cs~ka~~G~LyPL~~~lif 362 (764)
..++-..|.||||.+--+-
T Consensus 850 ifLRD~aGqiiPlakDal~ 868 (3015)
T KOG0943|consen 850 IFLRDGAGQIIPLAKDALG 868 (3015)
T ss_pred eEEEcCCCcEeechhhhhc
Confidence 3455678999999885554
No 66
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=43.44 E-value=2.1e+02 Score=27.57 Aligned_cols=80 Identities=14% Similarity=0.229 Sum_probs=51.4
Q ss_pred eeeeeecCceeEEEecCCceeeec-------cCCeE-EecCCeeEEEEEeecCccceEeEEEEEcCC-ceEEEeccchhh
Q psy2633 341 AVTCSYKAAAGYIYPLERGFIFIH-------KPPIH-IRFEEIATVNFARSGGSTRSFDFEIELKSG-VLHTFSSIEKEE 411 (764)
Q Consensus 341 ~V~cs~ka~~G~LyPL~~~lifl~-------KPp~~-I~~~eIe~V~feR~~~~~rtFDm~i~~K~~-~~~~Fs~I~~eE 411 (764)
-|-+.|+....++.+|++-||++- |--++ |||..|..|.++-.|+--....|.|.+.+. .+..|.=--...
T Consensus 32 ~I~~ayk~iRD~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siETAG~~DlD~Elki~i~~~~~~i~~~f~k~~d 111 (124)
T PF08000_consen 32 EIEAAYKLIRDEIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIETAGTFDLDSELKIWISGQGFPIEFEFKKKTD 111 (124)
T ss_dssp -EEEEEEESSEEEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEECSSTTSEEEEEEEETTESSEEEEEEGTTSH
T ss_pred eeeeeehhhceeEEEecChheEEecccCccceEEEEEEehhhccEEEEEeCCcccCcccEEEEECCCcEEEEEecCCCCC
Confidence 456778888889999999999975 33343 999999999998655444555566665543 344422222344
Q ss_pred HhhHHHHHh
Q psy2633 412 YGKLFDFIR 420 (764)
Q Consensus 412 ~~~L~~~l~ 420 (764)
...|...|.
T Consensus 112 i~~i~k~L~ 120 (124)
T PF08000_consen 112 IYEIYKALA 120 (124)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445544443
No 67
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=42.96 E-value=86 Score=28.49 Aligned_cols=68 Identities=21% Similarity=0.257 Sum_probs=48.2
Q ss_pred cCceeEEEecCCceeeecc-------------------CCeE-EecCCeeEEEEEeecCccceEeEEEEEcCCceEEEec
Q psy2633 347 KAAAGYIYPLERGFIFIHK-------------------PPIH-IRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSS 406 (764)
Q Consensus 347 ka~~G~LyPL~~~lifl~K-------------------Pp~~-I~~~eIe~V~feR~~~~~rtFDm~i~~K~~~~~~Fs~ 406 (764)
....|.|.-+.+.|.|... |... +++++|..|+.-| ...|.==|.|.+.+|..+-|+=
T Consensus 15 ~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RR--yllr~~AlEiF~~dg~s~f~~F 92 (106)
T PF14844_consen 15 DSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRR--YLLRDTALEIFFSDGRSYFFNF 92 (106)
T ss_dssp EEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEE--ETTEEEEEEEEETTS-EEEEE-
T ss_pred eeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHH--hcCcceEEEEEEcCCcEEEEEc
Confidence 4468899999998888643 4554 8999999999876 4567778999999998887665
Q ss_pred cchhhHhhHH
Q psy2633 407 IEKEEYGKLF 416 (764)
Q Consensus 407 I~~eE~~~L~ 416 (764)
=++.+.+.+.
T Consensus 93 ~~~~~R~~v~ 102 (106)
T PF14844_consen 93 ESKKERDEVY 102 (106)
T ss_dssp SSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 5666655543
No 68
>PF06213 CobT: Cobalamin biosynthesis protein CobT; InterPro: IPR006538 These proteins are CobT subunits of the aerobic cobalt chelatase (aerobic cobalamin biosynthesis pathway). Pseudomonas denitrificans CobT has been experimentally characterised [, ]. Aerobic cobalt chelatase consists of three subunits, CobT, CobN (IPR003672 from INTERPRO) and CobS (IPR006537 from INTERPRO). Cobalamin (vitamin B12) can be complexed with metal via the ATP-dependent reactions (aerobic pathway) (e.g., in P. denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. However, aerobic cobalt chelatase subunits CobN and CobS are homologous to Mg-chelatase subunits BchH and BchI, respectively []. CobT, too, has been found to be remotely related to the third subunit of Mg-chelatase, BchD (involved in bacteriochlorophyll synthesis, e.g., in Rhodobacter capsulatus) []. Nomenclature note: CobT of the aerobic pathway P. denitrificans is not a homologue of CobT of the anaerobic pathway (Salmonella typhimurium, Escherichia coli). Therefore, annotation of any members of this family as nicotinate-mononucleotide--5,6-dimethylbenzimidazole phosphoribosyltransferases is erroneous.
Probab=42.17 E-value=1.7e+02 Score=31.69 Aligned_cols=61 Identities=21% Similarity=0.350 Sum_probs=32.2
Q ss_pred CcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhcc-CHHHHHHHH--HHHHHHHHHHHHHHHhhh
Q psy2633 556 KPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTV-SSKEKAEYD--EKVNKAKEDYNEALKAYK 622 (764)
Q Consensus 556 rP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~L-s~eeK~~Y~--~kA~~~k~rY~~em~~Y~ 622 (764)
-|+..++.|+ .|..|.... ....++.+-+.|+.. .+.--.... ..+..++..|.+.+....
T Consensus 140 ~~l~~al~l~--lr~rl~g~~----~p~~~~~~~~~~R~~l~~~~g~~L~~L~~~~~dq~afa~~~~~ll 203 (282)
T PF06213_consen 140 APLSEALALL--LRERLTGQP----PPESAEKVVELWRPWLEEKAGKDLDGLRDSLDDQAAFARAARDLL 203 (282)
T ss_pred ccHHHHHHHH--HHHHHhCCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566555555 466677443 344466777778764 222222222 234456666666665554
No 69
>PF14317 YcxB: YcxB-like protein
Probab=40.75 E-value=49 Score=26.22 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=41.1
Q ss_pred EecCceeeeeCCCCceEEecCCCcceeEEEEeeCceeEEEEeeCCceEEecCCChhhHHHHHHHHH
Q psy2633 25 ITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKETEIDKICSFFK 90 (764)
Q Consensus 25 ~~~~g~~~k~~~~g~~~~i~~~di~~~~w~r~~~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~ 90 (764)
++++||.+++. +....+++++|.. |....+.+-|-+.-....++-=.+|...+++.+.++|+
T Consensus 1 f~~~gi~~~~~--~~~~~~~w~~i~~--v~e~~~~~~l~~~~~~~~~iPk~~f~~~e~~~f~~~lk 62 (62)
T PF14317_consen 1 FDEDGIIIESG--NGSSRIPWSDIKK--VVETKDYFYLYLGKNQAFIIPKRAFSEEEKEEFREFLK 62 (62)
T ss_pred CCCCEEEEEEC--CeEEEEEchheEE--EEEeCCEEEEEECCCeEEEEEHHHCCHhHHHHHHHHhC
Confidence 35788888863 4567888888876 45555555543322222345556888999999998874
No 70
>PF12462 Helicase_IV_N: DNA helicase IV / RNA helicase N terminal; InterPro: IPR022161 This domain family is found in bacteria and eukaryotes, and is approximately 170 amino acids in length. The family is found in association with PF00580 from PFAM. Nucleolin unwinds nucleic acid strands in the 5' to 3' direction with respect to the bound strand. It can unwind RNA-RNA duplexes, as well as DNA-DNA and DNA-RNA duplexes. Nucleolin is modulated by phosphorylation of serine and threonine residues in its N-terminal region.
Probab=40.65 E-value=90 Score=31.30 Aligned_cols=71 Identities=13% Similarity=0.240 Sum_probs=60.3
Q ss_pred ceEEEecCceeeeeCCCCceEEecCCCcc-eeEEEEeeCceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhc
Q psy2633 21 GKLKITDQNIVFKNKKTGKVEQINGPDLD-FVNWQKLVGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNF 93 (764)
Q Consensus 21 G~lk~~~~g~~~k~~~~g~~~~i~~~di~-~~~w~r~~~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~ 93 (764)
=+++|.+.||..-+ .|..+.|+-+++. .+.-.|+-=.-.|.+.+.++.++++.|.+-.+-..+..++...|
T Consensus 18 ~~v~L~~~~l~ls~--~~~~~~Ipf~~~~g~i~~krGl~Wg~L~f~~~~~~~v~l~Gl~w~e~~~Fa~~l~~~w 89 (166)
T PF12462_consen 18 NRVELDNAGLELSS--DGHEYRIPFNQLSGSIQVKRGLFWGELEFFLPDQKVVRLHGLPWSEAQRFAHHLNQAW 89 (166)
T ss_pred ceEEEcCCEEEEEe--CCeEEEecHHHhccceeeecceeEEEEEEEcCCCcEEEEcCCccHHHHHHHHHHHHHH
Confidence 46777778887774 4689999999999 88888887778899999999999999999999888888887765
No 71
>PRK14638 hypothetical protein; Provisional
Probab=39.91 E-value=1.5e+02 Score=29.36 Aligned_cols=45 Identities=16% Similarity=0.314 Sum_probs=36.1
Q ss_pred CcceeEEEEeeCceeEEEEeeCCceEEecC-CChhhHHHHHHHHHHhcCCC
Q psy2633 47 DLDFVNWQKLVGTWALRIFLKNGSLHRFAG-FKETEIDKICSFFKTNFKID 96 (764)
Q Consensus 47 di~~~~w~r~~~~~~l~i~~~~~~~~~f~G-f~~~d~~~l~~~~~~~~~~~ 96 (764)
+|-.+.|.+-++++.|||++-.. +| ..-+|-+.++..+...+...
T Consensus 24 elvdve~~~~~~~~~lrV~ID~~-----~G~v~lddC~~vSr~is~~LD~~ 69 (150)
T PRK14638 24 EIFDVQYRRESRGWVLRIIIDNP-----VGYVSVRDCELFSREIERFLDRE 69 (150)
T ss_pred EEEEEEEEecCCCcEEEEEEECC-----CCCcCHHHHHHHHHHHHHHhccc
Confidence 46678999999999999998532 34 78899999999998887743
No 72
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=39.83 E-value=27 Score=40.29 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=6.1
Q ss_pred HHHHHHHHhhhhcCC
Q psy2633 612 EDYNEALKAYKESGG 626 (764)
Q Consensus 612 ~rY~~em~~Y~~~~~ 626 (764)
......|..++.-.+
T Consensus 132 ~~~~~~~~~~~~~lg 146 (432)
T PF09073_consen 132 EVVPGIEEGLRQVLG 146 (432)
T ss_pred HHHHHHHHHHHHHhC
Confidence 334444444443333
No 73
>PF13619 KTSC: KTSC domain
Probab=39.35 E-value=69 Score=26.47 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=31.7
Q ss_pred cCCCcceeEEEEeeCceeEEEEeeCCceEEecCCChhhHHHHHH
Q psy2633 44 NGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKETEIDKICS 87 (764)
Q Consensus 44 ~~~di~~~~w~r~~~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~ 87 (764)
+.+-|.++.+-. ..-.|.|..++|.+|+|.|.+...++.|..
T Consensus 2 ~Ss~I~~v~Yd~--~~~~L~V~F~~G~~Y~Y~~Vp~~~~~~l~~ 43 (60)
T PF13619_consen 2 SSSNIRSVGYDP--ETRTLEVEFKSGSVYRYFGVPPEVYEALLN 43 (60)
T ss_pred ccCcccEEeECC--CCCEEEEEEcCCCEEEECCCCHHHHHHHHc
Confidence 345555555543 345788888999999999999999998864
No 74
>KOG1060|consensus
Probab=38.90 E-value=31 Score=42.28 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=14.7
Q ss_pred ccCceeEEEcceeeecCCcceEEEEeccceEEeeccc
Q psy2633 195 ATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTF 231 (764)
Q Consensus 195 ~~g~~i~~f~~i~~ltPRGry~i~~~~~~lrl~gkt~ 231 (764)
+.|-+++.|++ +|++.|-|.+|.|
T Consensus 196 VvgsAv~AF~e-------------vCPerldLIHkny 219 (968)
T KOG1060|consen 196 VVGSAVMAFEE-------------VCPERLDLIHKNY 219 (968)
T ss_pred chhHHHHHHHH-------------hchhHHHHhhHHH
Confidence 35777777776 4566665555543
No 75
>PRK14640 hypothetical protein; Provisional
Probab=37.80 E-value=2.3e+02 Score=27.98 Aligned_cols=88 Identities=10% Similarity=0.200 Sum_probs=58.8
Q ss_pred CcceeEEEEeeCceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCC-----CCceeeeeeeeee------------
Q psy2633 47 DLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKID-----VPEKELSVRGWNW------------ 109 (764)
Q Consensus 47 di~~~~w~r~~~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~-----l~~~e~~~~G~Nw------------ 109 (764)
+|-.+.|.+.++++.|||++-. =+|..-+|-+.++..+...+... -+.=|+|..|-+.
T Consensus 22 el~dve~~~~~~~~~lrV~ID~-----~~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~~~~f~r~~ 96 (152)
T PRK14640 22 ELWGIEFIRAGKHSTLRVYIDG-----ENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDRPLFKVAQFEKYV 96 (152)
T ss_pred EEEEEEEEecCCCcEEEEEEEC-----CCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcCCCHHHHHHhC
Confidence 4677889999999999999842 14678899999999998877653 1223344333211
Q ss_pred -------------eee-------eEecceEEEEeCCeeeEEeecccccccc
Q psy2633 110 -------------GGT-------KFIGNVLSFDVNNTTAFEIPLRDVSQCT 140 (764)
Q Consensus 110 -------------G~~-------~~~~~~l~f~v~~k~~feip~~~is~~~ 140 (764)
|.- .+++..+++.+.+++ ++||+++|..++
T Consensus 97 G~~v~V~l~~~~~~~k~~~G~L~~v~~~~v~l~~~~~~-~~i~~~~I~ka~ 146 (152)
T PRK14640 97 GQEAAVTLRMATNNRRKFKGVIKAVQGDMITLTVDGKD-EVLAFTNIQKAN 146 (152)
T ss_pred CCeEEEEEecccCCceEEEEEEEEEeCCEEEEEECCeE-EEEEhHHeeeEE
Confidence 112 234557777777766 678888887765
No 76
>KOG3064|consensus
Probab=37.39 E-value=16 Score=38.98 Aligned_cols=9 Identities=11% Similarity=0.302 Sum_probs=4.5
Q ss_pred CCeeEEEEE
Q psy2633 373 EEIATVNFA 381 (764)
Q Consensus 373 ~eIe~V~fe 381 (764)
-.|+.+||-
T Consensus 65 Kt~ERaH~P 73 (303)
T KOG3064|consen 65 KTIERAHMP 73 (303)
T ss_pred echhhhcCc
Confidence 345555553
No 77
>PRK14647 hypothetical protein; Provisional
Probab=36.10 E-value=2e+02 Score=28.71 Aligned_cols=45 Identities=11% Similarity=0.267 Sum_probs=35.8
Q ss_pred CcceeEEEEeeCceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCC
Q psy2633 47 DLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKID 96 (764)
Q Consensus 47 di~~~~w~r~~~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~ 96 (764)
++-.+.|.+-++...|||++-. =.|..-+|.+.++..+...+...
T Consensus 24 ~L~dv~~~~~~~~~~lrV~ID~-----~~gvslddC~~vSr~is~~LD~~ 68 (159)
T PRK14647 24 ELVELEYKREGREMVLRLFIDK-----EGGVNLDDCAEVSRELSEILDVE 68 (159)
T ss_pred EEEEEEEEecCCCeEEEEEEeC-----CCCCCHHHHHHHHHHHHHHHccc
Confidence 4567788888888899999842 25788999999999998888743
No 78
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.02 E-value=55 Score=30.89 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=53.6
Q ss_pred ccccceEEEecCceeeeeCC-CCceEEecCCCcceeEEEEeeC--ceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhc
Q psy2633 17 ALCPGKLKITDQNIVFKNKK-TGKVEQINGPDLDFVNWQKLVG--TWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNF 93 (764)
Q Consensus 17 ~~~~G~lk~~~~g~~~k~~~-~g~~~~i~~~di~~~~w~r~~~--~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~ 93 (764)
-..-|++-|.+.||-|=|.. -++-++|++++|..+.-+-..+ +.+..|.+.+++-|+|.- .|--.|-+.++.|.
T Consensus 21 ~~~~GkiliGDkgfEFYn~~nv~k~iqipWs~i~~v~vsvs~KK~~~~f~i~td~~gk~~FaS---kdsg~iLk~ir~yv 97 (122)
T COG4687 21 FAEYGKILIGDKGFEFYNDRNVEKFIQIPWSEINEVDVSVSLKKWGRQFSIFTDTQGKVRFAS---KDSGKILKKIREYV 97 (122)
T ss_pred hhhcCeEEEcccceeecCCCChhheeEecHHHhheeheeehhhhhcceEEEEEcCCceEEEEe---CCchhHHHHHHHHh
Confidence 34789999999999997654 5788999999999776555443 445667777777778753 44455666666665
Q ss_pred C
Q psy2633 94 K 94 (764)
Q Consensus 94 ~ 94 (764)
|
T Consensus 98 g 98 (122)
T COG4687 98 G 98 (122)
T ss_pred C
Confidence 5
No 79
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=34.98 E-value=13 Score=45.56 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q psy2633 581 FTEIAKKG 588 (764)
Q Consensus 581 ~~eisK~l 588 (764)
|++++++|
T Consensus 329 F~~vG~~l 336 (713)
T PF03344_consen 329 FREVGRLL 336 (713)
T ss_dssp --------
T ss_pred cccccccc
Confidence 33333333
No 80
>PRK14631 hypothetical protein; Provisional
Probab=34.62 E-value=2.1e+02 Score=29.14 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=38.1
Q ss_pred CcceeEEEEeeCceeEEEEeeC-------------CceEEecCCChhhHHHHHHHHHHhcCCC
Q psy2633 47 DLDFVNWQKLVGTWALRIFLKN-------------GSLHRFAGFKETEIDKICSFFKTNFKID 96 (764)
Q Consensus 47 di~~~~w~r~~~~~~l~i~~~~-------------~~~~~f~Gf~~~d~~~l~~~~~~~~~~~ 96 (764)
+|-.+.|.+-++.+.|||++-. |..-.-.|..-+|-+.++..+...+...
T Consensus 24 eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD~~ 86 (174)
T PRK14631 24 DLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDVH 86 (174)
T ss_pred EEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhccc
Confidence 4567888888888999999852 1111345889999999999999988753
No 81
>KOG0324|consensus
Probab=33.85 E-value=91 Score=32.66 Aligned_cols=102 Identities=22% Similarity=0.409 Sum_probs=62.9
Q ss_pred eeEEEcceeeecC----CcceEEEEeccceEEeeccceeeeecCCeeeEEeeecCCCceEEEEeccCCcccCCCccceeE
Q psy2633 199 AIAVFNEIQCLTP----RGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFL 274 (764)
Q Consensus 199 ~i~~f~~i~~ltP----RGry~i~~~~~~lrl~gkt~d~kI~y~nI~r~F~lP~~d~~~~~~vi~L~~PIrqGqtky~~l 274 (764)
.+-++.+|.-++| -+..-|-||-++|.+||.-|.|-=.+--..=+|=+|- |++.+
T Consensus 13 ~~~v~lnvyd~~~~n~y~~~lGlGIfHSgIeV~g~EyayG~h~~~~sGIfe~~P------------------~~~~~--- 71 (214)
T KOG0324|consen 13 RVPVYLNVYDLTPINKYLYWLGLGIFHSGIEVHGVEYAYGAHEYPSSGIFEVEP------------------GNCPE--- 71 (214)
T ss_pred ceeeeeeeecceehhhhhhhhcceeEeeeEEEeceeeeccccccCCCCeEeeCC------------------CCCCC---
Confidence 3455666777777 4555678999999999988876544433344444432 22222
Q ss_pred EEEEecCCCcccccC---CCHHHHHHHHhhhhhhccCCcHHHHHHH--------HHHHhcceee
Q psy2633 275 TLLFNQDETSEMELP---FSEQELKEKYEGKLDKELSGPTYEVMAK--------IMKVIVNRKI 327 (764)
Q Consensus 275 v~qF~~eee~~~~l~---~~~e~l~~k~~~kL~~~~~g~~~ev~~~--------~~k~l~~~ki 327 (764)
++|.+ .|.|+ +++++++ +|-.+|-+.|.|..|.++++ +-..|+|++|
T Consensus 72 -f~fr~----sI~lG~Td~~~~~v~-~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~I 129 (214)
T KOG0324|consen 72 -FTFRK----SILLGSTDLTEDDVR-RILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKI 129 (214)
T ss_pred -CceeE----EEEecCCCCCHHHHH-HHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCc
Confidence 11111 12222 4566665 56678999999999999875 3345778877
No 82
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=30.91 E-value=27 Score=32.76 Aligned_cols=62 Identities=21% Similarity=0.325 Sum_probs=46.2
Q ss_pred ccccceEEEecCceeeeeCCC--------CceE--------EecCCCcceeEEEEee-CceeEEEEeeCCceEEecCCCh
Q psy2633 17 ALCPGKLKITDQNIVFKNKKT--------GKVE--------QINGPDLDFVNWQKLV-GTWALRIFLKNGSLHRFAGFKE 79 (764)
Q Consensus 17 ~~~~G~lk~~~~g~~~k~~~~--------g~~~--------~i~~~di~~~~w~r~~-~~~~l~i~~~~~~~~~f~Gf~~ 79 (764)
...+|+|.|+...|-|-...+ ..+. .++-++|+.+.|.|.- |...|.|++.++.-+ |-.|..
T Consensus 16 ~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEiF~~d~~~~-f~~F~~ 94 (108)
T cd01201 16 VVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALELFLASRTSI-FFAFPD 94 (108)
T ss_pred EEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEEEEeCCceE-EEEeCc
Confidence 457999999999999986321 1122 6677888999999976 999999999998654 344653
No 83
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=30.72 E-value=56 Score=37.81 Aligned_cols=14 Identities=7% Similarity=0.164 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhcc
Q psy2633 311 TYEVMAKIMKVIVN 324 (764)
Q Consensus 311 ~~ev~~~~~k~l~~ 324 (764)
+-..|+.+.+.+.|
T Consensus 22 FKravs~~vr~~ag 35 (620)
T COG4547 22 FKRAVSECVRSIAG 35 (620)
T ss_pred HHHHHHHHHHHhcC
Confidence 33444555555554
No 84
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=29.71 E-value=23 Score=39.34 Aligned_cols=12 Identities=8% Similarity=-0.022 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhh
Q psy2633 610 AKEDYNEALKAY 621 (764)
Q Consensus 610 ~k~rY~~em~~Y 621 (764)
.-..|..-+|..
T Consensus 27 li~l~Rev~P~l 38 (324)
T PF05285_consen 27 LINLFREVNPEL 38 (324)
T ss_pred HHHHHHHHCHHh
Confidence 334444444444
No 85
>TIGR02888 spore_YlmC_YmxH sporulation protein, YlmC/YmxH family. Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor.
Probab=29.62 E-value=1.2e+02 Score=26.56 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=36.1
Q ss_pred cCceeEEE--cceeeecCCcceEEEEecc---ceEEeeccceeeeecCCeeeE
Q psy2633 196 TGDAIAVF--NEIQCLTPRGRYDIKIFNS---FFQLHGKTFDYKIPISTVLRM 243 (764)
Q Consensus 196 ~g~~i~~f--~~i~~ltPRGry~i~~~~~---~lrl~gkt~d~kI~y~nI~r~ 243 (764)
.|..+-.+ .||.+-.-.|+..--+-+. ++.|.|+..++.|||++|+++
T Consensus 15 ~G~~lG~v~~~Dl~iD~~~G~I~aiIi~~~~~~~~~~~~~~~~~Ipw~~I~kI 67 (76)
T TIGR02888 15 DGERLGVIGNIDLEIDEEDGRILSLIIPGKGKKFGLFSKGEEIEIPWDAIKKI 67 (76)
T ss_pred CCcEeeccccceEEEECCCCEEEEEEEeCCCcEEEeecCCcEEEEEhhhccEE
Confidence 67777777 6777776667766555554 567778888999999999986
No 86
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=28.94 E-value=75 Score=31.52 Aligned_cols=47 Identities=21% Similarity=0.527 Sum_probs=36.1
Q ss_pred CCCCHHHHHHH-HHHhhhccCHHHHHHHHHHHHH-HHHHHHHHHHhhhh
Q psy2633 577 PGISFTEIAKK-GGELWKTVSSKEKAEYDEKVNK-AKEDYNEALKAYKE 623 (764)
Q Consensus 577 P~~s~~eisK~-lge~Wk~Ls~eeK~~Y~~kA~~-~k~rY~~em~~Y~~ 623 (764)
|-+.+..+++. ||.-|+.|++++|+.|.+...+ ....|...+..|..
T Consensus 36 ~~~D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~l~~y~~ 84 (170)
T PF05494_consen 36 PYFDFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKRLDEYSG 84 (170)
T ss_dssp GGB-HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-SS
T ss_pred HhCCHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 56778888875 5789999999999999987766 56678899999963
No 87
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=28.42 E-value=1.2e+02 Score=36.54 Aligned_cols=45 Identities=20% Similarity=0.468 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhh------ccCHHHHHHHH---HHHHHHHHHHHHHHHhhhhcC
Q psy2633 581 FTEIAKKGGELWK------TVSSKEKAEYD---EKVNKAKEDYNEALKAYKESG 625 (764)
Q Consensus 581 ~~eisK~lge~Wk------~Ls~eeK~~Y~---~kA~~~k~rY~~em~~Y~~~~ 625 (764)
..++-..+.+.|. .|+...=+-+. ++-++....|+..+..|++.+
T Consensus 82 l~~Led~v~e~~~~ke~~Kkms~~nakaln~lkQklkK~~k~~e~~i~~yrenP 135 (595)
T PF05470_consen 82 LVELEDFVNETWADKEAKKKMSKNNAKALNTLKQKLKKYNKEYEAQIAKYRENP 135 (595)
T ss_pred HHHHHHHHHHHHhhhHhhhhcCHHhHHHHHHHHHHHHhhhhhHHHHHHHHHhCC
Confidence 3445555566663 33332222232 233344456888888888655
No 88
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=27.79 E-value=3.2e+02 Score=26.38 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=51.3
Q ss_pred CcceeEEEEeeCceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCC--C---Cceeeeeeeee-------------
Q psy2633 47 DLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKID--V---PEKELSVRGWN------------- 108 (764)
Q Consensus 47 di~~~~w~r~~~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~--l---~~~e~~~~G~N------------- 108 (764)
+|-.+.|.+-+++..|+|++-. =.|..-+|.+.++..+...+... + ..=|+|..|-.
T Consensus 12 ~l~~v~~~~~~~~~~l~V~id~-----~~gv~lddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~L~~~~~~~~~i 86 (141)
T PF02576_consen 12 ELVDVEVVKEGGNRILRVFIDK-----DGGVSLDDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRPLKSPRDFERFI 86 (141)
T ss_dssp EEEEEEEEEETTEEEEEEEEE------SS---HHHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS--SSHHHHHHH-
T ss_pred EEEEEEEEECCCCEEEEEEEEe-----CCCCCHHHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCcCCCHHHHHHhc
Confidence 4667899999999999999752 24677788999999988888762 1 12344444421
Q ss_pred ------------------eee-eeEecceEEEEeCCe---eeEEeeccccccc
Q psy2633 109 ------------------WGG-TKFIGNVLSFDVNNT---TAFEIPLRDVSQC 139 (764)
Q Consensus 109 ------------------wG~-~~~~~~~l~f~v~~k---~~feip~~~is~~ 139 (764)
.|. ..++++.+++.+.++ ..++||+++|..+
T Consensus 87 G~~v~v~~~~~~~~~~~~~G~L~~~~~~~i~l~~~~~~~~~~~~I~~~~I~ka 139 (141)
T PF02576_consen 87 GRKVKVKLKQPVNGRKEFEGKLLEVDEDEITLEVEGKGKKKEVEIPFSDIKKA 139 (141)
T ss_dssp SEEEEEE-SS-SSS-SEEEEEEEEEETTEEEEEEE-SS-EEEEEE-SS--SS-
T ss_pred CCeEEEEEeccCCCcEEEEEEEEEEeCCEEEEEECCccceEEEEEEHHHCceE
Confidence 122 245556667766655 4677777777654
No 89
>PF10756 bPH_6: Bacterial PH domain; InterPro: IPR019692 Proteins in this entry are conserved in the Actinomycetales. Although several members are annotated as RbiX homologues, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed. This entry also includes low molecular weight protein antigen 6.
Probab=27.44 E-value=85 Score=26.72 Aligned_cols=56 Identities=13% Similarity=0.353 Sum_probs=44.2
Q ss_pred eEEEecCceeeeeCCCCceEEecCCCcceeEEEEeeCceeEEEEeeCCceEEecCCChhh
Q psy2633 22 KLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKETE 81 (764)
Q Consensus 22 ~lk~~~~g~~~k~~~~g~~~~i~~~di~~~~w~r~~~~~~l~i~~~~~~~~~f~Gf~~~d 81 (764)
++.+++.||..+|-- .+..|++++|..+..... +.+ +.+.+.+|..+.|.|..-.+
T Consensus 3 rv~v~~~Gl~vr~~~--rt~~vpW~~I~~v~~~~~-~~~-v~~~~~dg~~~~l~~~~~~~ 58 (73)
T PF10756_consen 3 RVEVDPDGLRVRNLF--RTRRVPWSEIAGVRFRRG-RRW-VRLDLRDGRLVPLPAVQLGD 58 (73)
T ss_pred eEEEcCCcEEEEcCc--eeEEEChHHeEEEEccCC-ceE-EEEECCCCCEEEEeeEEcCC
Confidence 578899999999754 789999999999883333 222 88888999999998887654
No 90
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=27.04 E-value=7.6e+02 Score=26.01 Aligned_cols=131 Identities=16% Similarity=0.282 Sum_probs=76.2
Q ss_pred ceeeeeeeeeeeeeeEecceEEEEeC-CeeeEEeeccccccccC--CCceEEEEecCCCCCccceEEEEEecCCCC----
Q psy2633 99 EKELSVRGWNWGGTKFIGNVLSFDVN-NTTAFEIPLRDVSQCTT--GKNEVTVEFHPNDEAAESLIEMRFYIPTNE---- 171 (764)
Q Consensus 99 ~~e~~~~G~NwG~~~~~~~~l~f~v~-~k~~feip~~~is~~~~--~Knev~lef~~~d~~~d~L~emRf~vP~~~---- 171 (764)
.+.+.-..|-=|.+-+....|+|.-+ +|. +|||+.|-.+.. -.|. .+++- ..-+.|+|..|...
T Consensus 17 ~~~~~d~~W~~~rIiLs~~rlvl~~~~~k~--~Ipls~I~Di~~~~~~~~-~~~~~------~~~~si~~~~~~~~~v~~ 87 (221)
T PF04283_consen 17 GRKLPDGKWVKGRIILSNDRLVLAFNDGKI--TIPLSSIEDIGVRLPPNQ-LLAFF------SDYVSIKYKSDEGERVIL 87 (221)
T ss_pred CcccccCCcEEEEEEEecCEEEEEcCCCeE--EEecceeEecccccCccc-ccccc------CceEEEEEecCCCcEEEE
Confidence 34455567999999999999999874 444 999999988753 3443 23332 12367777777222
Q ss_pred -CCCCCChHHHHHHHHhcccccccccCceeEEEcceeeecCC---cc---------eEEEEeccceEEeecccee-eeec
Q psy2633 172 -IAGDTDPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPR---GR---------YDIKIFNSFFQLHGKTFDY-KIPI 237 (764)
Q Consensus 172 -~~~~~~~~~~f~~~i~~~a~i~~~~g~~i~~f~~i~~ltPR---Gr---------y~i~~~~~~lrl~gkt~d~-kI~y 237 (764)
..++...++.|.-.|.. |-+ -|.. |.+..|+ |+ -.|.+-...+.+....-.+ .|..
T Consensus 88 i~~~~~~~~e~F~~~lf~-~lL---~~~~------v~v~hpAi~GGvV~~d~~Wekg~l~v~~~~i~~~~~~~~~~~I~l 157 (221)
T PF04283_consen 88 ISPEDSKTIEKFETKLFR-ALL---NGKE------VLVKHPAIVGGVVQQDAEWEKGKLKVTKKGIWFASSSGQFVSIDL 157 (221)
T ss_pred EEcCCcccHHHHHHHHHH-Hhh---CCeE------EEEECCceecceeccCCccccceEEEeccceEEEecCCceeEEEe
Confidence 11112256666644331 111 1211 3344442 22 2456667777777666555 7888
Q ss_pred CCeeeEEeeec
Q psy2633 238 STVLRMFTLPH 248 (764)
Q Consensus 238 ~nI~r~F~lP~ 248 (764)
+||..+-.--+
T Consensus 158 ~~V~~ve~~~r 168 (221)
T PF04283_consen 158 DDVGDVEREER 168 (221)
T ss_pred cccceeeeeee
Confidence 88877665444
No 91
>KOG0699|consensus
Probab=26.98 E-value=82 Score=35.52 Aligned_cols=6 Identities=50% Similarity=0.966 Sum_probs=2.4
Q ss_pred HHHHHh
Q psy2633 415 LFDFIR 420 (764)
Q Consensus 415 L~~~l~ 420 (764)
|-+||+
T Consensus 72 LPdflK 77 (542)
T KOG0699|consen 72 LPDFLK 77 (542)
T ss_pred hhHHHH
Confidence 334443
No 92
>PF15406 PH_6: Pleckstrin homology domain
Probab=26.60 E-value=1.3e+02 Score=28.33 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=34.0
Q ss_pred CCeEEecCCeeEEEEEeecCccceEeEEEEEcCCceEEEeccchhhHhhHHHHHh
Q psy2633 366 PPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420 (764)
Q Consensus 366 Pp~~I~~~eIe~V~feR~~~~~rtFDm~i~~K~~~~~~Fs~I~~eE~~~L~~~l~ 420 (764)
|.=.|.|.|+..|.=+ +..-|=+.+ +|..|+|-.-.-.|-++-.-.|+
T Consensus 63 P~GiinLadase~~~~----g~~kF~f~~---~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 63 PSGIINLADASEPEKD----GSNKFHFKI---KGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred CcceEehhhccccccC----CCceEEEEe---CCceeeeecCCHHHhccHHHHhh
Confidence 6667999999888753 333444444 68999999998888776554444
No 93
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=26.36 E-value=36 Score=37.78 Aligned_cols=6 Identities=17% Similarity=0.556 Sum_probs=2.3
Q ss_pred Hhhhhc
Q psy2633 619 KAYKES 624 (764)
Q Consensus 619 ~~Y~~~ 624 (764)
.-|+.-
T Consensus 29 ~l~Rev 34 (324)
T PF05285_consen 29 NLFREV 34 (324)
T ss_pred HHHHHH
Confidence 334433
No 94
>PHA02608 67 prohead core protein; Provisional
Probab=26.08 E-value=41 Score=29.67 Aligned_cols=24 Identities=8% Similarity=-0.049 Sum_probs=12.3
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHH
Q psy2633 593 KTVSSKEKAEYDEKVNKAKEDYNE 616 (764)
Q Consensus 593 k~Ls~eeK~~Y~~kA~~~k~rY~~ 616 (764)
+.|-...|..|..++.+--..++.
T Consensus 11 ~DLV~akK~F~~~Me~rt~~li~e 34 (80)
T PHA02608 11 GDLVEAKKEFASIMEARTEALIEE 34 (80)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666554444433
No 95
>KOG2038|consensus
Probab=25.26 E-value=78 Score=38.92 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=7.3
Q ss_pred eCCeeeEEeeccc
Q psy2633 123 VNNTTAFEIPLRD 135 (764)
Q Consensus 123 v~~k~~feip~~~ 135 (764)
.+|.|-|+|||..
T Consensus 143 p~g~~wYe~~l~~ 155 (988)
T KOG2038|consen 143 PEGTKWYEIPLDP 155 (988)
T ss_pred CCCCcceeeccCc
Confidence 4456666666643
No 96
>KOG0296|consensus
Probab=25.08 E-value=1.5e+02 Score=33.48 Aligned_cols=61 Identities=20% Similarity=0.365 Sum_probs=41.5
Q ss_pred ccccceeecccCccccceEEEecCceeeeeCCCCceEEe--cCCCcceeEEEEeeCceeEEEEeeCCceEEec
Q psy2633 5 LEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQI--NGPDLDFVNWQKLVGTWALRIFLKNGSLHRFA 75 (764)
Q Consensus 5 ~~f~~i~~~~~g~~~~G~lk~~~~g~~~k~~~~g~~~~i--~~~di~~~~w~r~~~~~~l~i~~~~~~~~~f~ 75 (764)
++++..||.- |. -.|.+ +.||.+.++....| +.+||.++.|.+ |+.-|-...++|.+..|.
T Consensus 114 FshdgtlLAT-Gd-msG~v------~v~~~stg~~~~~~~~e~~dieWl~WHp--~a~illAG~~DGsvWmw~ 176 (399)
T KOG0296|consen 114 FSHDGTLLAT-GD-MSGKV------LVFKVSTGGEQWKLDQEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQ 176 (399)
T ss_pred EccCceEEEe-cC-CCccE------EEEEcccCceEEEeecccCceEEEEecc--cccEEEeecCCCcEEEEE
Confidence 3455555543 22 24444 45898776666777 789999999998 777777788888766553
No 97
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.78 E-value=99 Score=32.90 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=4.3
Q ss_pred HhhhccCHHH
Q psy2633 590 ELWKTVSSKE 599 (764)
Q Consensus 590 e~Wk~Ls~ee 599 (764)
..++.|+-++
T Consensus 180 ~~~~~lTQeE 189 (240)
T PF05764_consen 180 QEERPLTQEE 189 (240)
T ss_pred ccCCCCCHHH
Confidence 3344444443
No 98
>COG4909 PduC Propanediol dehydratase, large subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.41 E-value=67 Score=35.93 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=35.2
Q ss_pred eCceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCCCCcee
Q psy2633 57 VGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKE 101 (764)
Q Consensus 57 ~~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~l~~~e 101 (764)
+...--.|.+++|.++.+||-...||+-|-.|+.+ |+|+++.-+
T Consensus 34 pndpkpsiki~ng~v~eldgk~~~dfdlidhfiar-ygidl~rae 77 (554)
T COG4909 34 PNDPKPSIKIKNGRVIELDGKLEHDFDLIDHFIAR-YGIDLERAE 77 (554)
T ss_pred CCCCCCcceeccCeEEeecCccccchhHHHHHHHH-hCCChhhhH
Confidence 34455567788999999999999999988777765 599887654
No 99
>KOG2038|consensus
Probab=24.19 E-value=72 Score=39.18 Aligned_cols=8 Identities=13% Similarity=0.277 Sum_probs=3.5
Q ss_pred hhHHHHHH
Q psy2633 563 MWFNDMRE 570 (764)
Q Consensus 563 lF~~e~R~ 570 (764)
+||++-+.
T Consensus 697 ~f~nAd~t 704 (988)
T KOG2038|consen 697 LFCNADHT 704 (988)
T ss_pred cccCCccc
Confidence 45544443
No 100
>KOG2051|consensus
Probab=23.94 E-value=76 Score=40.23 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=11.7
Q ss_pred CCCCCCcchhhhhhHHHHH
Q psy2633 551 KNAPKKPMSAYMMWFNDMR 569 (764)
Q Consensus 551 p~~PKrP~sAy~lF~~e~R 569 (764)
+++-|+-+--|++|++...
T Consensus 794 rgs~kkkl~~fL~~fq~Y~ 812 (1128)
T KOG2051|consen 794 RGSTKKKLDQFLVAFQRYI 812 (1128)
T ss_pred cchhHHHHHHHHHHHHHHh
Confidence 3444555667777776654
No 101
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=23.62 E-value=2.2e+02 Score=27.22 Aligned_cols=76 Identities=20% Similarity=0.162 Sum_probs=53.9
Q ss_pred ccccceEEEecCceeeeeCC-CCceEEecCCCcceeEEEEe--e-CceeEEEEeeCCceEEecCCChhhHHHHHHHHHHh
Q psy2633 17 ALCPGKLKITDQNIVFKNKK-TGKVEQINGPDLDFVNWQKL--V-GTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTN 92 (764)
Q Consensus 17 ~~~~G~lk~~~~g~~~k~~~-~g~~~~i~~~di~~~~w~r~--~-~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~ 92 (764)
....|.+-+.+.++-|-|.. ...-+|||+++|..+.=+=. + .-....|.++.++.+.|.. .|--++-+.+++|
T Consensus 21 ~~~yGkimiGDkaFEFyn~~n~~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk~~G~f~Fss---kd~k~~Lk~~r~y 97 (118)
T PF06115_consen 21 LGKYGKIMIGDKAFEFYNDRNVEDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTKKNGKFTFSS---KDSKKVLKAIRKY 97 (118)
T ss_pred ccccCeEEEcccceEeecCCChhhcEEeChhheeEEEEEEEECCCEEeeEEEEECCCCEEEEEE---CChHHHHHHHHHh
Confidence 44789999999999997764 45779999999987754433 1 1223567788877777764 4456666777777
Q ss_pred cCC
Q psy2633 93 FKI 95 (764)
Q Consensus 93 ~~~ 95 (764)
.+-
T Consensus 98 v~~ 100 (118)
T PF06115_consen 98 VGN 100 (118)
T ss_pred cCH
Confidence 653
No 102
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=23.25 E-value=63 Score=37.97 Aligned_cols=23 Identities=35% Similarity=0.480 Sum_probs=15.8
Q ss_pred CCCccccccCCCCCCCcchhhhh
Q psy2633 541 GGSTKRKKKDKNAPKKPMSAYMM 563 (764)
Q Consensus 541 k~kk~kk~kdp~~PKrP~sAy~l 563 (764)
+..+.++.-.+.+||+|-|||+-
T Consensus 906 kpsk~~k~sk~~kpkkpdsa~ip 928 (943)
T PTZ00449 906 KPSKPKKPSKPKKPKKPDSAFIP 928 (943)
T ss_pred CCCCCCCCCCCCCCCCCccccch
Confidence 33344555567889999999863
No 103
>PF13619 KTSC: KTSC domain
Probab=22.84 E-value=98 Score=25.56 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=29.7
Q ss_pred CCeeEEEEEeecCccceEeEEEEEcCCceEEEeccchhhHhhHH
Q psy2633 373 EEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLF 416 (764)
Q Consensus 373 ~eIe~V~feR~~~~~rtFDm~i~~K~~~~~~Fs~I~~eE~~~L~ 416 (764)
+-|.+|.|.. .+=-|.|.|++|..+++.++|...+..|.
T Consensus 4 s~I~~v~Yd~-----~~~~L~V~F~~G~~Y~Y~~Vp~~~~~~l~ 42 (60)
T PF13619_consen 4 SNIRSVGYDP-----ETRTLEVEFKSGSVYRYFGVPPEVYEALL 42 (60)
T ss_pred CcccEEeECC-----CCCEEEEEEcCCCEEEECCCCHHHHHHHH
Confidence 4566666643 22347888899999999999999998875
No 104
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=22.23 E-value=1.5e+02 Score=29.64 Aligned_cols=74 Identities=15% Similarity=0.305 Sum_probs=53.1
Q ss_pred eeecCceeEEEecCCceeeeccCCeEEecCCeeEEEEEeecCccceEeE---EEEEcCCceEEEeccchhhHhhHHHHHh
Q psy2633 344 CSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARSGGSTRSFDF---EIELKSGVLHTFSSIEKEEYGKLFDFIR 420 (764)
Q Consensus 344 cs~ka~~G~LyPL~~~lifl~KPp~~I~~~eIe~V~feR~~~~~rtFDm---~i~~K~~~~~~Fs~I~~eE~~~L~~~l~ 420 (764)
|.|-..+-.| .+.+|++|... ..||+-.|..|.-+|| .-.|-|-| +|+|- +..++|-.++++|-+.|.++|.
T Consensus 77 wry~v~~~el-~iq~GiLv~~r--~viP~~RVQhVDt~~G-PL~R~~~La~vti~TA-ss~~~IeaL~~~eAdrlr~~l~ 151 (161)
T COG3402 77 WRYEVEEDEL-DIQHGILVRTR--TVIPYVRVQHVDTEQG-PLLRRYGLATVTITTA-SSDHTIEALDREEADRLRERLA 151 (161)
T ss_pred heeecccceE-EeeccEEEEEE--EEeeEEEEEeeecccC-hHHHHhCcceEEEEec-cccceecccCHHHHHHHHHHHH
Confidence 5544444344 46778888764 5578888999998774 34555655 44444 4499999999999999999998
Q ss_pred hc
Q psy2633 421 EK 422 (764)
Q Consensus 421 ~k 422 (764)
..
T Consensus 152 ~l 153 (161)
T COG3402 152 NL 153 (161)
T ss_pred HH
Confidence 63
No 105
>COG4343 CRISPR-associated protein, RecB family exonuclease [Defense mechanisms]
Probab=21.93 E-value=28 Score=37.28 Aligned_cols=37 Identities=27% Similarity=0.615 Sum_probs=24.6
Q ss_pred ceeeeeeeeeeeeeeEecceEEEEeCCeeeEEeecccccc--ccCCCc
Q psy2633 99 EKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQ--CTTGKN 144 (764)
Q Consensus 99 ~~e~~~~G~NwG~~~~~~~~l~f~v~~k~~feip~~~is~--~~~~Kn 144 (764)
...-.++||||+..=+... +-.-+++++|.- |-+++|
T Consensus 21 ~V~eELRGWnw~~PPVkp~---------~~~~lslSdi~y~yCpt~Rd 59 (281)
T COG4343 21 PVYEELRGWNWNEPPVKPP---------RYVRLSLSDIVYGYCPTGRD 59 (281)
T ss_pred CCcHHhcCCcCCCCCCCCc---------cccCccHHHhhccCCCCchh
Confidence 3344689999998765543 334578888877 655543
No 106
>PF05793 TFIIF_alpha: Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); InterPro: IPR008851 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II [].; GO: 0003677 DNA binding, 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1F3U_F 1NHA_A 1I27_A 1J2X_A 2K7L_A 1ONV_A.
Probab=21.76 E-value=30 Score=40.98 Aligned_cols=11 Identities=9% Similarity=0.048 Sum_probs=6.0
Q ss_pred ceEEEeccchh
Q psy2633 400 VLHTFSSIEKE 410 (764)
Q Consensus 400 ~~~~Fs~I~~e 410 (764)
..|.|+.+.+-
T Consensus 144 ~wY~F~~~~~~ 154 (527)
T PF05793_consen 144 KWYNFTPKAQY 154 (527)
T ss_dssp EEEEEEEGGG-
T ss_pred ceeeccccccc
Confidence 36667666543
No 107
>PRK14636 hypothetical protein; Provisional
Probab=21.44 E-value=4.6e+02 Score=26.72 Aligned_cols=58 Identities=16% Similarity=0.002 Sum_probs=41.0
Q ss_pred CcceeEEEEeeCceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCC-C----Cceeeeeeee
Q psy2633 47 DLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKID-V----PEKELSVRGW 107 (764)
Q Consensus 47 di~~~~w~r~~~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~-l----~~~e~~~~G~ 107 (764)
+|-.+.|.+-++.+.|||++-... =.|..-+|.+.++..+...+... + +.=|+|..|.
T Consensus 21 eLvdve~~~~~~~~~lrV~ID~~~---~ggV~lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPGl 83 (176)
T PRK14636 21 DLVRVAMFGGKSDPTLQIMAERPD---TRQLVIEDCAALSRRLSDVFDELDPIEDAYRLEVSSPGI 83 (176)
T ss_pred EEEEEEEEcCCCCeEEEEEEECCC---CCCcCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCC
Confidence 466788888888999999984211 03588899999999999988743 1 2235555554
No 108
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=21.22 E-value=1.2e+02 Score=25.80 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=35.8
Q ss_pred EEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCCCCceeeeeeee
Q psy2633 62 LRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGW 107 (764)
Q Consensus 62 l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~l~~~e~~~~G~ 107 (764)
|+|.+.+|..+.+.=-...=+..|+..+....|+...+..|...|+
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~ 46 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGK 46 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCe
Confidence 5677778876666555667799999999999999888887776554
No 109
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=21.10 E-value=2.1e+02 Score=25.22 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=35.1
Q ss_pred CceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCCCCce
Q psy2633 58 GTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEK 100 (764)
Q Consensus 58 ~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~l~~~ 100 (764)
...+|+|...+|..+.|.=-+.+-+.+|+..+....|+++..-
T Consensus 10 ~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~ 52 (87)
T cd01763 10 EHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSV 52 (87)
T ss_pred CeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccce
Confidence 4567777778899999998888899999999999988765433
No 110
>KOG0262|consensus
Probab=20.81 E-value=2.8e+02 Score=36.23 Aligned_cols=27 Identities=11% Similarity=0.222 Sum_probs=16.7
Q ss_pred EeeCCceEEecCCChhhHHHHHHHHHH
Q psy2633 65 FLKNGSLHRFAGFKETEIDKICSFFKT 91 (764)
Q Consensus 65 ~~~~~~~~~f~Gf~~~d~~~l~~~~~~ 91 (764)
.=++|.+..+.+-..+.-..|++-+-.
T Consensus 510 qd~dg~~t~l~~~~~~qR~alA~qLLt 536 (1640)
T KOG0262|consen 510 QDEDGTLTLLSPMTDEQREALANQLLT 536 (1640)
T ss_pred ecCCCceeecCCCCHHHHHHHHHHhhc
Confidence 335666666666676666667666554
No 111
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.44 E-value=1.6e+02 Score=30.70 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=40.0
Q ss_pred CCCCHHHHH-HHHHHhhhccCHHHHHHHHHHHHH-HHHHHHHHHHhhhhcCCCCC
Q psy2633 577 PGISFTEIA-KKGGELWKTVSSKEKAEYDEKVNK-AKEDYNEALKAYKESGGGQD 629 (764)
Q Consensus 577 P~~s~~eis-K~lge~Wk~Ls~eeK~~Y~~kA~~-~k~rY~~em~~Y~~~~~~~~ 629 (764)
|-+.+.=++ ..||.-||.+++++++.|...... ....|-..+..|+.+.-...
T Consensus 68 p~vd~~~~a~~vLGk~~k~aspeQ~~~F~~aF~~yl~q~Y~~aL~~Y~~q~~~v~ 122 (202)
T COG2854 68 PYVDFKYAAKLVLGKYYKTASPEQRQAFFKAFRTYLEQTYGQALLDYKGQTLKVK 122 (202)
T ss_pred hhhcHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCCceeC
Confidence 334444333 357899999999999999987666 67789999999987665543
No 112
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=20.42 E-value=9e+02 Score=27.70 Aligned_cols=80 Identities=14% Similarity=0.069 Sum_probs=51.4
Q ss_pred ccccccCceeEEEcceeeecCCcceEEEEecc-ceEEeeccceeeeecCCeeeEEeeecCCCceEEEEeccCC-cccCCC
Q psy2633 191 SVINATGDAIAVFNEIQCLTPRGRYDIKIFNS-FFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDP-PIKQGQ 268 (764)
Q Consensus 191 ~i~~~~g~~i~~f~~i~~ltPRGry~i~~~~~-~lrl~gkt~d~kI~y~nI~r~F~lP~~d~~~~~~vi~L~~-PIrqGq 268 (764)
++....||.|++- .+.+..|-|+|.+.+... .+..|-..+.+.|.-.=|..-|.+|........++|..++ -|..|.
T Consensus 163 g~DE~p~DGvFT~-~l~l~~~~G~Y~~~v~~~n~vF~R~~~q~v~V~p~Pi~~~~~~~~~~~~~h~l~v~~d~~~i~~~s 241 (374)
T TIGR03503 163 GLDERPGDGIFTG-EFNLDVAPGEYRPTYQSRNPVFLREVEQPVLVYPLPVSYTVIQSEDESGAHQLMVDADAGHIDPGS 241 (374)
T ss_pred cCCCCCCCceEEE-EeeccCCCceEEEEEEEcCceEEEEEEEeEEEECCCeeEEEEccCCCCCceEEEEEcccceecccc
Confidence 3455678888753 578888999999999874 4444444455555556677778887643433455555554 466666
Q ss_pred ccc
Q psy2633 269 TRY 271 (764)
Q Consensus 269 tky 271 (764)
+..
T Consensus 242 ~~~ 244 (374)
T TIGR03503 242 LVI 244 (374)
T ss_pred EEE
Confidence 654
Done!