Query psy2633
Match_columns 764
No_of_seqs 400 out of 1412
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 21:10:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gcl_A Hypothetical 63.0 kDa p 100.0 2E-76 6.9E-81 616.7 24.6 255 177-431 2-260 (261)
2 3f5r_A FACT complex subunit PO 100.0 1.9E-49 6.3E-54 391.8 9.0 152 3-156 22-182 (191)
3 3fss_A Histone chaperone RTT10 100.0 3.1E-29 1.1E-33 253.3 21.6 209 197-422 6-237 (237)
4 2co9_A Thymus high mobility gr 99.8 5.5E-21 1.9E-25 173.4 11.0 85 544-628 8-92 (102)
5 2eqz_A High mobility group pro 99.8 1.1E-20 3.9E-25 166.0 10.7 80 543-622 5-86 (86)
6 1k99_A Upstream binding factor 99.8 1.6E-20 5.3E-25 169.6 9.9 84 545-628 2-85 (99)
7 1hme_A High mobility group pro 99.8 2.1E-20 7.1E-25 160.6 8.4 76 548-623 1-76 (77)
8 1wgf_A Upstream binding factor 99.8 7.9E-21 2.7E-25 168.5 4.7 80 542-621 9-88 (90)
9 1cg7_A Protein (NON histone pr 99.8 7.8E-21 2.7E-25 169.5 4.3 83 543-625 10-92 (93)
10 2lhj_A High mobility group pro 99.8 1.3E-20 4.5E-25 169.2 4.5 82 543-624 12-95 (97)
11 2crj_A SWI/SNF-related matrix- 99.8 8.7E-20 3E-24 162.3 9.3 78 548-625 2-79 (92)
12 2cs1_A PMS1 protein homolog 1; 99.8 9.7E-20 3.3E-24 162.0 9.5 79 549-627 3-81 (92)
13 2e6o_A HMG box-containing prot 99.8 7.9E-20 2.7E-24 161.0 8.7 78 546-623 10-87 (87)
14 1aab_A High mobility group pro 99.8 2.5E-20 8.6E-25 162.5 5.1 78 548-625 2-81 (83)
15 3nm9_A HMG-D, high mobility gr 99.8 9.6E-20 3.3E-24 155.1 8.4 73 551-625 1-73 (73)
16 1hry_A Human SRY; DNA, DNA-bin 99.8 5.8E-20 2E-24 157.4 6.7 75 550-624 1-75 (76)
17 1j46_A SRY, sex-determining re 99.8 2.8E-19 9.6E-24 156.7 9.5 78 550-627 1-78 (85)
18 1l8y_A Upstream binding factor 99.8 4.5E-19 1.5E-23 156.9 9.2 77 552-629 3-79 (91)
19 1wxl_A Single-strand recogniti 99.8 2.7E-19 9.2E-24 152.4 7.2 72 551-624 1-72 (73)
20 4euw_A Transcription factor SO 99.8 4.4E-19 1.5E-23 162.0 8.0 82 545-626 21-102 (106)
21 1gt0_D Transcription factor SO 99.8 6.9E-19 2.3E-23 152.3 8.7 76 552-627 1-76 (80)
22 1wz6_A HMG-box transcription f 99.8 2.3E-19 8E-24 156.0 5.5 78 549-626 3-80 (82)
23 1ckt_A High mobility group 1 p 99.8 7.1E-19 2.4E-23 148.6 6.9 69 553-621 1-71 (71)
24 3u2b_C Transcription factor SO 99.8 1.1E-18 3.6E-23 150.5 7.9 76 552-627 1-76 (79)
25 3f27_D Transcription factor SO 99.8 1.1E-18 3.8E-23 151.9 8.0 77 550-626 3-79 (83)
26 2lef_A LEF-1 HMG, protein (lym 99.8 2E-18 6.8E-23 151.5 9.6 76 552-627 1-76 (86)
27 2gzk_A Sex-determining region 99.8 2.5E-18 8.6E-23 167.4 11.0 80 544-623 79-158 (159)
28 4a3n_A Transcription factor SO 99.7 8.2E-19 2.8E-23 148.0 6.1 71 552-622 1-71 (71)
29 1i11_A Transcription factor SO 99.7 1.6E-18 5.6E-23 150.4 5.7 76 551-626 2-77 (81)
30 1v64_A Nucleolar transcription 99.7 4.6E-18 1.6E-22 155.8 8.5 80 544-627 7-87 (108)
31 2yrq_A High mobility group pro 99.7 8.7E-18 3E-22 165.9 10.5 81 545-625 93-173 (173)
32 2yrq_A High mobility group pro 99.7 2.3E-17 7.9E-22 162.8 12.1 84 543-626 5-90 (173)
33 3fgh_A Transcription factor A, 99.7 7.4E-18 2.5E-22 141.0 6.8 66 552-621 1-66 (67)
34 1v63_A Nucleolar transcription 99.7 8.4E-17 2.9E-21 145.7 9.4 78 549-628 4-81 (101)
35 2yuk_A Myeloid/lymphoid or mix 99.7 8.3E-18 2.8E-22 148.8 1.6 70 544-617 13-84 (90)
36 2d7l_A WD repeat and HMG-box D 99.7 5.2E-17 1.8E-21 141.3 5.6 61 550-610 2-63 (81)
37 3tmm_A Transcription factor A, 99.6 1.9E-16 6.5E-21 164.2 7.3 81 547-627 35-115 (238)
38 2cto_A Novel protein; high mob 99.6 2E-16 6.7E-21 141.0 4.6 69 548-618 5-76 (93)
39 3tq6_A Transcription factor A, 99.6 6.1E-16 2.1E-20 158.0 7.9 79 549-627 5-83 (214)
40 3tq6_A Transcription factor A, 99.6 1.9E-16 6.4E-21 161.7 0.9 79 545-627 106-184 (214)
41 3tmm_A Transcription factor A, 99.6 2.1E-16 7.3E-21 163.8 -0.2 80 545-628 138-217 (238)
42 2gzk_A Sex-determining region 99.5 8.6E-15 2.9E-19 142.4 9.4 75 551-625 2-76 (159)
43 3f5r_A FACT complex subunit PO 95.8 0.038 1.3E-06 54.8 10.1 79 348-429 35-125 (191)
44 2gcl_A Hypothetical 63.0 kDa p 92.9 0.14 4.9E-06 53.3 6.7 77 19-99 174-257 (261)
45 3fss_A Histone chaperone RTT10 89.0 0.54 1.8E-05 48.0 6.2 71 19-91 165-236 (237)
46 1y5o_A TFB1, RNA polymerase II 85.3 3.6 0.00012 37.5 8.7 73 18-92 11-107 (115)
47 1pfj_A TFIIH basal transcripti 76.0 4.5 0.00015 36.6 6.0 75 18-92 19-99 (108)
48 1j8r_A PAPG adhesin, pyeloneph 64.6 3.4 0.00012 39.8 2.7 83 102-251 100-186 (196)
49 3b77_A Uncharacterized protein 59.6 42 0.0014 33.2 9.5 90 326-420 6-119 (193)
50 1y5o_A TFB1, RNA polymerase II 55.6 75 0.0025 28.9 9.7 76 342-421 5-106 (115)
51 1zyi_A Methylosome subunit pic 54.5 37 0.0013 33.0 8.1 87 100-192 32-142 (171)
52 3hsa_A Pleckstrin homology dom 49.9 84 0.0029 29.0 9.3 81 341-421 33-122 (126)
53 1ib8_A Conserved protein SP14. 48.4 90 0.0031 29.8 9.8 43 47-94 27-69 (164)
54 2ca6_A RAN GTPase-activating p 44.7 4.9 0.00017 42.7 0.2 27 68-94 7-33 (386)
55 1pfj_A TFIIH basal transcripti 36.3 1.5E+02 0.0053 26.6 8.6 76 344-421 15-98 (108)
56 2yf0_A Myotubularin-related pr 29.6 1.8E+02 0.0063 32.8 9.9 73 346-421 22-97 (512)
57 3k9o_B Ubiquitin, UBB+1; E2-25 28.0 76 0.0026 26.7 5.1 47 60-106 2-48 (96)
58 2qgu_A Probable signal peptide 27.9 61 0.0021 32.2 5.1 47 577-623 70-118 (211)
59 3u12_A USP37 protein; structur 25.9 1.3E+02 0.0045 28.2 6.5 56 41-96 65-122 (141)
60 4dwf_A HLA-B-associated transc 25.8 74 0.0025 26.4 4.6 48 59-106 5-52 (90)
61 4eew_A Large proline-rich prot 25.5 75 0.0026 26.3 4.5 53 55-107 13-65 (88)
62 4hcn_B Polyubiquitin, ubiquiti 22.1 1.1E+02 0.0038 26.0 5.1 49 58-106 21-69 (98)
63 2ehp_A AQ_1627 protein; putati 21.8 1.2E+02 0.0042 27.0 5.1 44 56-99 72-117 (126)
64 3v6c_B Ubiquitin; structural g 20.5 1.1E+02 0.0038 25.5 4.6 49 58-106 16-64 (91)
65 3phx_B Ubiquitin-like protein 20.4 1.2E+02 0.0042 24.3 4.7 48 59-106 4-51 (79)
66 3m63_B Ubiquitin domain-contai 20.3 66 0.0022 28.0 3.2 53 55-107 22-75 (101)
67 4fbj_B NEDD8; effector-HOST ta 20.2 1.3E+02 0.0045 25.0 5.0 46 61-106 2-47 (88)
No 1
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=100.00 E-value=2e-76 Score=616.70 Aligned_cols=255 Identities=38% Similarity=0.746 Sum_probs=227.5
Q ss_pred ChHHHHHHHHhcccccccccCceeEEEcceeeecCCcceEEEEeccceEEeeccceeeeecCCeeeEEeeecCCCceEEE
Q psy2633 177 DPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFF 256 (764)
Q Consensus 177 ~~~~~f~~~i~~~a~i~~~~g~~i~~f~~i~~ltPRGry~i~~~~~~lrl~gkt~d~kI~y~nI~r~F~lP~~d~~~~~~ 256 (764)
++|++|+++||++|+|++++|++||+|.+|+|+||||||+|+||.++|||||+||||+|+|++|+|+||||+|+++|++|
T Consensus 2 ~~~~~~~~~i~~ka~i~~~~gd~i~~~~dv~~ltPRGrydi~~~~~~lrl~gkt~dyki~~~~I~r~f~LP~pd~~~~~~ 81 (261)
T 2gcl_A 2 HMAEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHMM 81 (261)
T ss_dssp ------------------CCTTSSEEEEEEEEEETTEEEEEEECSSEEEEEESSCEEEEEGGGEEEEEEEECTTSSEEEE
T ss_pred cHHHHHHHHHHhhccccccCCceEEEEcCceEEcCCCceEEEEecCcEEEeCCcccceechhhEEEEEEccCCCcCceEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcccCCCccceeEEEEEecCCCcccccCCCHHHHHHHHhhhhhhccCCcHHHHHHHHHHHhcceeeccCCCcccC
Q psy2633 257 VISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGH 336 (764)
Q Consensus 257 vi~L~~PIrqGqtky~~lv~qF~~eee~~~~l~~~~e~l~~k~~~kL~~~~~g~~~ev~~~~~k~l~~~ki~~P~~F~s~ 336 (764)
||.|+||||||||+|+||||||.++++++++||+++++++++|+++|.++|+|++|+||+++|++|+|++|++|+.|.|+
T Consensus 82 vi~ld~PirqGqt~y~~lV~qf~~~e~~~~~ln~~~~~~~~ky~~~L~~~~~g~~~~vv~~ilk~l~g~kv~~P~~F~S~ 161 (261)
T 2gcl_A 82 VMAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSK 161 (261)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEETTCEEEEECCCCHHHHHHHTTTTCCSEEEEEHHHHHHHHHHHHHCCCEECCCSCCCT
T ss_pred EEecCCCccCCCccCCeEEEEEeCCCceEeeecCCHHHHhhhhccccccccCCcHHHHHHHHHHHhcCCeeecCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeeecCceeEEEecCCceeeeccCCeEEecCCeeEEEEEee-cC--ccceEeEEEEEcCC-ceEEEeccchhhH
Q psy2633 337 TGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARS-GG--STRSFDFEIELKSG-VLHTFSSIEKEEY 412 (764)
Q Consensus 337 ~g~~~V~cs~ka~~G~LyPL~~~lifl~KPp~~I~~~eIe~V~feR~-~~--~~rtFDm~i~~K~~-~~~~Fs~I~~eE~ 412 (764)
.|++||+|++||++|+||||++||||+||||+||+|++|++|+|+|+ ++ ++|||||+|++|+| ++|+|+||+|+||
T Consensus 162 ~~~~~Vkcs~ka~eG~LypL~~gflF~~KP~~~i~~~~I~sV~fsrvg~~~~~~rTFdl~v~~k~g~~~~~Fs~IdreE~ 241 (261)
T 2gcl_A 162 YDQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQ 241 (261)
T ss_dssp TSCSCEEEEETTEEEEEEECSSEEEEESSSCEEEEGGGEEEEEEEC--------CEEEEEEEESTTCCEEEEEEEEGGGH
T ss_pred CCCceEEEeccCCceEEEEecCceEEeeCCcEEEEhhHeeEEEEEeccCCcccCceEEEEEEEcCCCccEEEcccCHHHH
Confidence 99999999999999999999999999999999999999999999994 33 78999999999998 9999999999999
Q ss_pred hhHHHHHhhcCceeeecCC
Q psy2633 413 GKLFDFIREKKLRVKNTGK 431 (764)
Q Consensus 413 ~~L~~~l~~k~i~I~n~~~ 431 (764)
.+|.+||++|+|+|+|.+.
T Consensus 242 ~~L~~ylk~k~l~ikn~~~ 260 (261)
T 2gcl_A 242 QLLEQFLKSKNLRVKNEDR 260 (261)
T ss_dssp HHHHHHHHHTTCCEEC---
T ss_pred HHHHHHHHHcCCeeecCCC
Confidence 9999999999999999653
No 2
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-49 Score=391.83 Aligned_cols=152 Identities=30% Similarity=0.563 Sum_probs=100.4
Q ss_pred ccccccceeecccCccccceEEEecCceeeeeC-CCC-------ceEEecCCCcceeEEEEeeCceeEEEEeeCCceEEe
Q psy2633 3 EALEFQEVSSEFRGALCPGKLKITDQNIVFKNK-KTG-------KVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHRF 74 (764)
Q Consensus 3 ~~~~f~~i~~~~~g~~~~G~lk~~~~g~~~k~~-~~g-------~~~~i~~~di~~~~w~r~~~~~~l~i~~~~~~~~~f 74 (764)
..++|+|||+++ +..+|+|||+++||+||++ +|| ++++|+++||.+|+|+|++|+|+|||++|+|.+|+|
T Consensus 22 ~~~~F~nI~l~~--s~~~G~lkla~~glgWK~~~~tG~~~~~~~k~~~i~~sdI~~a~W~r~~rg~~LrI~~K~g~~~~f 99 (191)
T 3f5r_A 22 MSTDFDRIYLNQ--SKFSGRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGCRGYDLKINTKNQGVIQL 99 (191)
T ss_dssp SSEEEEEEEETT--CSSCEEEEEETTEEEEEECCSSTTTHHHHCCCEEEEGGGEEEEEEEECSSSEEEEEEESSSCEEEE
T ss_pred eeeeECcEeecC--CCcccEEEEcCCceEEeecCCCCccccccCceEEEcHHHcCeEEEEEccCCcEEEEEECCCceEEe
Confidence 468999999985 7899999999999999999 999 999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHhcCCCCCceeeeeeeeeeeeeeEecceEEEEeCCeeeEEeecccccccc-CCCceEEEEecCC
Q psy2633 75 AGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQCT-TGKNEVTVEFHPN 153 (764)
Q Consensus 75 ~Gf~~~d~~~l~~~~~~~~~~~l~~~e~~~~G~NwG~~~~~~~~l~f~v~~k~~feip~~~is~~~-~~Knev~lef~~~ 153 (764)
+||+++|+++|++||++||+|+|++++||++|||||++.|.|+.|+|.|++||||||||++||||| ++||||+||||++
T Consensus 100 dGF~~~D~~~L~~~fk~~f~i~Le~kEls~kGwNWG~~~f~g~~L~F~v~~KpaFEIPls~VSn~nl~gKNEValEFh~~ 179 (191)
T 3f5r_A 100 DGFSQDDYNLIKNDFHRRFNIQVEQREHSLRGWNWGKTDLARNEMVFALNGKPTFEIPYARINNTNLTSKNEVGIEFNIQ 179 (191)
T ss_dssp EEECGGGHHHHHHHHHHHHCCCCEECSSTTTTC-----------------------------------------------
T ss_pred cCCCHHHHHHHHHHHHHHcCCCceeeeeecccccceecEEcCCEEEEEeCCeeEEEecHHHhhhcccCCCceEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999998 5999999999986
Q ss_pred CCC
Q psy2633 154 DEA 156 (764)
Q Consensus 154 d~~ 156 (764)
++.
T Consensus 180 ~~~ 182 (191)
T 3f5r_A 180 DEE 182 (191)
T ss_dssp ---
T ss_pred Ccc
Confidence 653
No 3
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Probab=99.97 E-value=3.1e-29 Score=253.33 Aligned_cols=209 Identities=19% Similarity=0.288 Sum_probs=155.5
Q ss_pred CceeEEEcceeeecC-CcceEEEEecc---c--eEEeeccc--eeeee--cCCeeeEEeeecCCCce-EEEEeccCCccc
Q psy2633 197 GDAIAVFNEIQCLTP-RGRYDIKIFNS---F--FQLHGKTF--DYKIP--ISTVLRMFTLPHKDGRQ-NFFVISLDPPIK 265 (764)
Q Consensus 197 g~~i~~f~~i~~ltP-RGry~i~~~~~---~--lrl~gkt~--d~kI~--y~nI~r~F~lP~~d~~~-~~~vi~L~~PIr 265 (764)
...|+.+.+|+|++| |.|++|.+|.+ . +.-..+++ .+.|. +++|+.++|||.|...+ .++.| ..++..
T Consensus 6 ~~iIfei~~vS~~sP~RKKlnl~~hl~~~~~~P~lsi~~~~~~E~si~~l~~~i~~~~~LPvpeK~~~~~l~i-~~~~~~ 84 (237)
T 3fss_A 6 TNTIFKLEGVSVLSPLRKKLDLVFYLSNVDGSPVITLLKGNDRELSIYQLNKNIKMASFLPVPEKPNLIYLFM-TYTSCE 84 (237)
T ss_dssp CEEEEEEEEEEEEESSCEEEEEEEEECTTTCCEEEEEEETTEEEEEECCHHHHEEEEEEEECTTCTTEEEEEE-EESCCG
T ss_pred ceEEEEecceeEeccccceEEEEEEECCCCCceEEEEecCCCceEEhhhhhcceeEEEEecCCccCCceEEEE-EecCCC
Confidence 578999999999999 99999999954 1 22233443 45555 88999999999997543 33333 333322
Q ss_pred CCCccceeEEEEEecCCCcccccCCCHHHHHHHH--hhhhhhccCCcHHHHHHHHHHH--hcceeeccCCCccc------
Q psy2633 266 QGQTRYHFLTLLFNQDETSEMELPFSEQELKEKY--EGKLDKELSGPTYEVMAKIMKV--IVNRKITVPGSFRG------ 335 (764)
Q Consensus 266 qGqtky~~lv~qF~~eee~~~~l~~~~e~l~~k~--~~kL~~~~~g~~~ev~~~~~k~--l~~~ki~~P~~F~s------ 335 (764)
+.+.-..||+|++.+. +..++ .+.|...-. .+-.++..+.|+ |||.++.-|..+..
T Consensus 85 -~~~~~dPiv~t~n~~~------------~~kq~~~~g~~~~~~~-~f~~~i~~~~rQ~~l~G~~i~~pf~~~~~~~~~~ 150 (237)
T 3fss_A 85 -DNKFSEPVVMTLNKEN------------TLNQFKKLGLLDSNVT-DFEKCVEYIRKQAILTGFKISNPFVNSTLVDTDA 150 (237)
T ss_dssp -GGCCCSCEEEEEEHHH------------HHHHHHHTTSSCTTCC-CTHHHHHHHHHHHHHTTCCCBCTTC---------
T ss_pred -CCCCCCCEEEEEchHH------------hhhhhhhcCCCcccch-hHHHHHHHHHHHHhhcCeeccCcccccccccCCC
Confidence 2233345888887652 22222 223333333 444555555554 79999988875432
Q ss_pred -CCCcceeeeeecCceeEEEecCCceee-eccCCeEEecCCeeEEEEEeecCccceEeEEEEEcCCceEEEeccchhhHh
Q psy2633 336 -HTGTSAVTCSYKAAAGYIYPLERGFIF-IHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYG 413 (764)
Q Consensus 336 -~~g~~~V~cs~ka~~G~LyPL~~~lif-l~KPp~~I~~~eIe~V~feR~~~~~rtFDm~i~~K~~~~~~Fs~I~~eE~~ 413 (764)
....+||+|++||++|+||||++|||| ++||++||++++|++|.|+|+ ++|||||+|++|+|..|+|+||+|+||+
T Consensus 151 ~~~~~~~Vkc~~kAkeG~LyfL~~~ilFgf~KP~l~i~~~dI~svs~Srv--~~RTFdl~v~~k~g~e~eFsmIDq~E~~ 228 (237)
T 3fss_A 151 EKINSFHLQCHRGTKEGTLYFLPDHIIFGFKKPILLLDASDIESITYSSI--TRLTFNASLVTKDGEKYEFSMIDQTEYA 228 (237)
T ss_dssp -CCCCEEEEEESSSSEEEEEECSSEEEEESSSSCEEEEGGGEEEEEEESC--CSSEEEEEEEETTSCEEEEEEEEGGGHH
T ss_pred CCCCceEEEEEcCCCCeEEEEecCceEEecCCCeEEEEehhEEEEEEEec--cCcEEEEEEEECCCCeEEEeecCHHHHH
Confidence 124689999999999999999999999 599999999999999999997 5999999999999999999999999999
Q ss_pred hHHHHHhhc
Q psy2633 414 KLFDFIREK 422 (764)
Q Consensus 414 ~L~~~l~~k 422 (764)
.|.+||++|
T Consensus 229 ~Id~fvk~K 237 (237)
T 3fss_A 229 KIDDYVKRK 237 (237)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999999975
No 4
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=5.5e-21 Score=173.36 Aligned_cols=85 Identities=38% Similarity=0.673 Sum_probs=80.4
Q ss_pred ccccccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2633 544 TKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKE 623 (764)
Q Consensus 544 k~kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~ 623 (764)
++++++||++||||+||||||++++|+.|+.+||++++++|+++||++|++|++++|++|+++|++++++|.++|+.|+.
T Consensus 8 ~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 87 (102)
T 2co9_A 8 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRA 87 (102)
T ss_dssp SCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC
Q psy2633 624 SGGGQ 628 (764)
Q Consensus 624 ~~~~~ 628 (764)
+....
T Consensus 88 ~~~~~ 92 (102)
T 2co9_A 88 SLVSK 92 (102)
T ss_dssp HHTSS
T ss_pred hcccc
Confidence 87654
No 5
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=165.96 Aligned_cols=80 Identities=41% Similarity=0.657 Sum_probs=75.5
Q ss_pred CccccccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCC--HHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2633 543 STKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGIS--FTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKA 620 (764)
Q Consensus 543 kk~kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s--~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~ 620 (764)
+++++++||++||||+||||+|++++|+.|+.+||+++ +++|+++||++|+.|++++|++|+++|++++++|.++|+.
T Consensus 5 ~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp CSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999999999999987 6999999999999999999999999999999999999999
Q ss_pred hh
Q psy2633 621 YK 622 (764)
Q Consensus 621 Y~ 622 (764)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred cC
Confidence 94
No 6
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.82 E-value=1.6e-20 Score=169.57 Aligned_cols=84 Identities=26% Similarity=0.483 Sum_probs=79.6
Q ss_pred cccccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2633 545 KRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKES 624 (764)
Q Consensus 545 ~kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~ 624 (764)
+|+++||++||||+|||||||+++|+.|+.+||++++++|+++||++|++|++++|++|.++|++++++|.++|.+|+..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~ 81 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED 81 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q psy2633 625 GGGQ 628 (764)
Q Consensus 625 ~~~~ 628 (764)
.+.-
T Consensus 82 ~P~~ 85 (99)
T 1k99_A 82 HPDL 85 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6543
No 7
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.81 E-value=2.1e-20 Score=160.60 Aligned_cols=76 Identities=41% Similarity=0.795 Sum_probs=74.1
Q ss_pred ccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2633 548 KKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKE 623 (764)
Q Consensus 548 ~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~ 623 (764)
++||++||||+||||+|++++|..|+.+||++++++|+++||++|+.|++++|++|.++|++++++|.++|+.|++
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999974
No 8
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.81 E-value=7.9e-21 Score=168.46 Aligned_cols=80 Identities=23% Similarity=0.434 Sum_probs=74.8
Q ss_pred CCccccccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2633 542 GSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAY 621 (764)
Q Consensus 542 ~kk~kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y 621 (764)
++++++++||++||||+|||||||+++|+.|+.+||++++++|+++||++|+.|++++|++|+++|++++++|.++|..+
T Consensus 9 ~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~~ 88 (90)
T 1wgf_A 9 PSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGPS 88 (90)
T ss_dssp SCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSSC
T ss_pred CCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999887654
No 9
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.81 E-value=7.8e-21 Score=169.52 Aligned_cols=83 Identities=40% Similarity=0.719 Sum_probs=78.8
Q ss_pred CccccccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2633 543 STKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622 (764)
Q Consensus 543 kk~kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~ 622 (764)
+++++++||++||||+||||||++++|..|+.+||++++++|+++||++|++|++++|++|.++|++++++|.++|+.|+
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~ 89 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYN 89 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcC
Q psy2633 623 ESG 625 (764)
Q Consensus 623 ~~~ 625 (764)
.++
T Consensus 90 ~~~ 92 (93)
T 1cg7_A 90 ATL 92 (93)
T ss_dssp HHT
T ss_pred Hcc
Confidence 765
No 10
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.80 E-value=1.3e-20 Score=169.25 Aligned_cols=82 Identities=30% Similarity=0.591 Sum_probs=78.0
Q ss_pred CccccccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCC--HHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2633 543 STKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGIS--FTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKA 620 (764)
Q Consensus 543 kk~kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s--~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~ 620 (764)
+++++++||++||||+||||||++++|..|+.+||+++ +++|+++||++|+.|++++|++|+++|++++++|.++|+.
T Consensus 12 ~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 91 (97)
T 2lhj_A 12 RPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAE 91 (97)
T ss_dssp CTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhhc
Q psy2633 621 YKES 624 (764)
Q Consensus 621 Y~~~ 624 (764)
|+.+
T Consensus 92 y~~~ 95 (97)
T 2lhj_A 92 YAQR 95 (97)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9864
No 11
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.80 E-value=8.7e-20 Score=162.34 Aligned_cols=78 Identities=32% Similarity=0.636 Sum_probs=75.4
Q ss_pred ccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy2633 548 KKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESG 625 (764)
Q Consensus 548 ~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~ 625 (764)
.+||++||||+||||+|++++|+.|+.+||++++++|+++||++|+.|++++|++|.++|++++++|.++|++|+.+.
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~ 79 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSE 79 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999998654
No 12
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=9.7e-20 Score=162.03 Aligned_cols=79 Identities=35% Similarity=0.517 Sum_probs=75.9
Q ss_pred cCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy2633 549 KDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGG 627 (764)
Q Consensus 549 kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~~ 627 (764)
.+|++||||+||||+|++++|+.|+.+||++++++|+++||++|+.|++++|++|+++|++++++|.++|+.|+.++..
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~~ 81 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQESQ 81 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999977644
No 13
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=7.9e-20 Score=160.97 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=75.1
Q ss_pred ccccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2633 546 RKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKE 623 (764)
Q Consensus 546 kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~ 623 (764)
++.+||++||||+||||||++++|+.|+.+||++++++|+++||++|++|++++|++|+++|++++++|.+++++|+.
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yky 87 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCWK 87 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999999963
No 14
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.80 E-value=2.5e-20 Score=162.54 Aligned_cols=78 Identities=36% Similarity=0.634 Sum_probs=74.5
Q ss_pred ccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCC--HHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy2633 548 KKDKNAPKKPMSAYMMWFNDMREKIKKDNPGIS--FTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESG 625 (764)
Q Consensus 548 ~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s--~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~ 625 (764)
++||++||||+||||+||+++|+.|+.+||+++ +++|+++||++|+.|++++|++|.++|++++++|.++|+.|+...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 81 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPK 81 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 479999999999999999999999999999987 599999999999999999999999999999999999999998654
No 15
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.79 E-value=9.6e-20 Score=155.14 Aligned_cols=73 Identities=49% Similarity=1.035 Sum_probs=70.3
Q ss_pred CCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy2633 551 KNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESG 625 (764)
Q Consensus 551 p~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~ 625 (764)
.++||||+||||+||+++|+.|+.+||++++++|+++||++|+.|++ |++|+++|++++++|+++|++|++++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~kg 73 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEANG 73 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999999999999999999999998 99999999999999999999998753
No 16
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.79 E-value=5.8e-20 Score=157.42 Aligned_cols=75 Identities=29% Similarity=0.505 Sum_probs=71.6
Q ss_pred CCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2633 550 DKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKES 624 (764)
Q Consensus 550 dp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~ 624 (764)
||++||||+||||||++++|+.|+.+||++++++|+++||++|+.|++++|++|.++|++++++|.++|++|+.+
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~ 75 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYR 75 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999865
No 17
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.78 E-value=2.8e-19 Score=156.72 Aligned_cols=78 Identities=28% Similarity=0.470 Sum_probs=74.8
Q ss_pred CCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy2633 550 DKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGG 627 (764)
Q Consensus 550 dp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~~ 627 (764)
.|++||||+||||||++++|+.|+.+||++++++|+++||++|++|++++|++|.++|++++++|.++|++|+.++..
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~prr 78 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRR 78 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCC
Confidence 379999999999999999999999999999999999999999999999999999999999999999999999877644
No 18
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.77 E-value=4.5e-19 Score=156.87 Aligned_cols=77 Identities=16% Similarity=0.266 Sum_probs=73.4
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q psy2633 552 NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQD 629 (764)
Q Consensus 552 ~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~~~~ 629 (764)
++||||+|||++|+++.|..++.+||+ ++++|+|+||++|+.|++.+|++|+++|+++|++|+++|++|+.++...+
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~~~~~ 79 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATN 79 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGGGSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 689999999999999999999999999 99999999999999999999999999999999999999999987776543
No 19
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.77 E-value=2.7e-19 Score=152.36 Aligned_cols=72 Identities=46% Similarity=0.972 Sum_probs=69.9
Q ss_pred CCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2633 551 KNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKES 624 (764)
Q Consensus 551 p~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~ 624 (764)
|++||||+||||+|++++|+.|+.+||++++++|+++||++|+.| ++|++|+++|++++++|.++|+.|+.+
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 789999999999999999999999999999999999999999999 889999999999999999999999754
No 20
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.77 E-value=4.4e-19 Score=162.01 Aligned_cols=82 Identities=26% Similarity=0.491 Sum_probs=71.4
Q ss_pred cccccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2633 545 KRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKES 624 (764)
Q Consensus 545 ~kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~ 624 (764)
....++|++||||+|||||||+++|+.|+.+||++++++|+++||++|+.|++++|++|+++|++++++|.++|++|+.+
T Consensus 21 ~~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 21 FQSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp -------CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred hhccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CC
Q psy2633 625 GG 626 (764)
Q Consensus 625 ~~ 626 (764)
+.
T Consensus 101 Pr 102 (106)
T 4euw_A 101 PR 102 (106)
T ss_dssp --
T ss_pred CC
Confidence 64
No 21
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.77 E-value=6.9e-19 Score=152.29 Aligned_cols=76 Identities=28% Similarity=0.497 Sum_probs=72.9
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy2633 552 NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGG 627 (764)
Q Consensus 552 ~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~~ 627 (764)
++||||+||||+|++++|..|+.+||++++++|+++||++|+.|++++|++|.++|++++++|.++|++|+.++..
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~r 76 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRR 76 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999876643
No 22
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.76 E-value=2.3e-19 Score=156.02 Aligned_cols=78 Identities=18% Similarity=0.469 Sum_probs=75.0
Q ss_pred cCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy2633 549 KDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGG 626 (764)
Q Consensus 549 kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~ 626 (764)
.+|++||||+||||||++++|..|+.+||++++++|+++||++|+.|++++|++|.++|++++++|.++|++|+.++.
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p~ 80 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGPS 80 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999987653
No 23
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.76 E-value=7.1e-19 Score=148.61 Aligned_cols=69 Identities=36% Similarity=0.668 Sum_probs=67.0
Q ss_pred CCCCcchhhhhhHHHHHHHHHHhCCCCCH--HHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2633 553 APKKPMSAYMMWFNDMREKIKKDNPGISF--TEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAY 621 (764)
Q Consensus 553 ~PKrP~sAy~lF~~e~R~~ik~e~P~~s~--~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y 621 (764)
+||||+||||+|++++|+.++.+||++++ ++|+++||++|++|++++|++|.++|++++++|.++|+.|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 69999999999999999999999999975 9999999999999999999999999999999999999987
No 24
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.75 E-value=1.1e-18 Score=150.54 Aligned_cols=76 Identities=25% Similarity=0.447 Sum_probs=73.1
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy2633 552 NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGG 627 (764)
Q Consensus 552 ~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~~ 627 (764)
+.||||+||||||++++|+.|+.+||++++++|+++||++|+.|++++|++|.++|++++++|.++|++|+.++..
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~Prk 76 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRK 76 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999977653
No 25
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.75 E-value=1.1e-18 Score=151.93 Aligned_cols=77 Identities=25% Similarity=0.483 Sum_probs=71.2
Q ss_pred CCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy2633 550 DKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGG 626 (764)
Q Consensus 550 dp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~ 626 (764)
.+++||||+||||||++++|+.|+.+||++++++|+++||++|+.|++++|++|.++|++++++|.++|++|+.++.
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P~ 79 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPR 79 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999987664
No 26
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.75 E-value=2e-18 Score=151.55 Aligned_cols=76 Identities=21% Similarity=0.359 Sum_probs=72.8
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy2633 552 NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGG 627 (764)
Q Consensus 552 ~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~~ 627 (764)
+.||||+||||||++++|+.|+.+||++++++|+++||++|++|++++|++|.++|+.++++|.++|++|+.++..
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~ 76 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNY 76 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSST
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999877643
No 27
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.75 E-value=2.5e-18 Score=167.35 Aligned_cols=80 Identities=43% Similarity=0.803 Sum_probs=76.7
Q ss_pred ccccccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2633 544 TKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKE 623 (764)
Q Consensus 544 k~kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~ 623 (764)
++++.+||++||||+||||+||+++|+.|+.+||++++++|+++||++|++|++++|++|+++|++++++|.++|++|++
T Consensus 79 ~kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 79 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp CGGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999985
No 28
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.75 E-value=8.2e-19 Score=148.00 Aligned_cols=71 Identities=27% Similarity=0.575 Sum_probs=63.7
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2633 552 NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622 (764)
Q Consensus 552 ~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~ 622 (764)
++||||+||||+|++++|+.|+.+||++++++|+++||++|+.|++++|++|.++|++++++|.++|++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999995
No 29
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.73 E-value=1.6e-18 Score=150.36 Aligned_cols=76 Identities=30% Similarity=0.474 Sum_probs=69.3
Q ss_pred CCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy2633 551 KNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGG 626 (764)
Q Consensus 551 p~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~ 626 (764)
+++||||+||||||++++|..|+.+||++++++|+++||++|+.|++++|++|.++|++++++|.++|++|+.++.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~pr 77 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPR 77 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC-----
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeccC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999987663
No 30
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.73 E-value=4.6e-18 Score=155.79 Aligned_cols=80 Identities=29% Similarity=0.436 Sum_probs=74.4
Q ss_pred ccccccCCCCC-CCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2633 544 TKRKKKDKNAP-KKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622 (764)
Q Consensus 544 k~kk~kdp~~P-KrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~ 622 (764)
+.++.+||++| |||+||||+||+++|+.|+ ++++++|+++||++|+.|++++|++|+++|++++++|.++|+.|+
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~ 82 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFL 82 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566899999 9999999999999999987 889999999999999999999999999999999999999999999
Q ss_pred hcCCC
Q psy2633 623 ESGGG 627 (764)
Q Consensus 623 ~~~~~ 627 (764)
.+...
T Consensus 83 ~~~~~ 87 (108)
T 1v64_A 83 ESLPE 87 (108)
T ss_dssp HHSCH
T ss_pred hhCCH
Confidence 87643
No 31
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=8.7e-18 Score=165.88 Aligned_cols=81 Identities=42% Similarity=0.810 Sum_probs=77.1
Q ss_pred cccccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2633 545 KRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKES 624 (764)
Q Consensus 545 ~kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~ 624 (764)
+++.+||++||||+|||||||+++|..|+.+||++++++|+++||++|++|++++|++|+++|++++++|.++|++|+++
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~k 172 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 172 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q psy2633 625 G 625 (764)
Q Consensus 625 ~ 625 (764)
+
T Consensus 173 ~ 173 (173)
T 2yrq_A 173 G 173 (173)
T ss_dssp C
T ss_pred C
Confidence 3
No 32
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=162.84 Aligned_cols=84 Identities=35% Similarity=0.627 Sum_probs=78.1
Q ss_pred CccccccCCCCCCCcchhhhhhHHHHHHHHHHhCCC--CCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2633 543 STKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPG--ISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKA 620 (764)
Q Consensus 543 kk~kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~--~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~ 620 (764)
++++.++||++||||+||||+|++++|+.|+.+||+ +++++|+++||++|+.|++++|++|+++|+.++++|.++|+.
T Consensus 5 ~~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (173)
T 2yrq_A 5 SSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKT 84 (173)
T ss_dssp SCSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334567899999999999999999999999999999 689999999999999999999999999999999999999999
Q ss_pred hhhcCC
Q psy2633 621 YKESGG 626 (764)
Q Consensus 621 Y~~~~~ 626 (764)
|....+
T Consensus 85 y~~~~~ 90 (173)
T 2yrq_A 85 YIPPKG 90 (173)
T ss_dssp CCCCCC
T ss_pred hhhhhh
Confidence 986543
No 33
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.71 E-value=7.4e-18 Score=141.02 Aligned_cols=66 Identities=30% Similarity=0.539 Sum_probs=63.6
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2633 552 NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAY 621 (764)
Q Consensus 552 ~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y 621 (764)
|+||||+|||++|++++|+.++.+|| ++|++.||++|+.|++++|++|+++|++++++|.++|++|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999998776 7999999999999999999999999999999999999998
No 34
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.68 E-value=8.4e-17 Score=145.69 Aligned_cols=78 Identities=18% Similarity=0.339 Sum_probs=70.4
Q ss_pred cCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy2633 549 KDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQ 628 (764)
Q Consensus 549 kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~~~ 628 (764)
...++||||+||||+||++++. ..++|+++++||+|+||++|+.|++++|++|+++|++++++|+++|+.|..+..+.
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~~~ 81 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQ 81 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 3467899999999999999975 34566789999999999999999999999999999999999999999999887653
No 35
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.67 E-value=8.3e-18 Score=148.75 Aligned_cols=70 Identities=23% Similarity=0.348 Sum_probs=65.8
Q ss_pred ccccccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCC--HHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHH
Q psy2633 544 TKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGIS--FTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEA 617 (764)
Q Consensus 544 k~kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s--~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~e 617 (764)
..|+++||++||||+|||||||+++|++|+.+||+++ +++|+ ++|+.|++++|++|+++|+++|++|+..
T Consensus 13 ~~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 13 TLKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4566789999999999999999999999999999999 99999 9999999999999999999999999753
No 36
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.2e-17 Score=141.30 Aligned_cols=61 Identities=25% Similarity=0.522 Sum_probs=59.4
Q ss_pred CCCCCCCcchhhhhhHHHHHHHHHHhCCCCC-HHHHHHHHHHhhhccCHHHHHHHHHHHHHH
Q psy2633 550 DKNAPKKPMSAYMMWFNDMREKIKKDNPGIS-FTEIAKKGGELWKTVSSKEKAEYDEKVNKA 610 (764)
Q Consensus 550 dp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s-~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~ 610 (764)
++++||||+||||+||+++|++|+.+||+++ +++|+|+||++|+.|++++|++|+++|+.+
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999998 999999999999999999999999999887
No 37
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=164.18 Aligned_cols=81 Identities=22% Similarity=0.401 Sum_probs=77.5
Q ss_pred cccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q psy2633 547 KKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGG 626 (764)
Q Consensus 547 k~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~ 626 (764)
..++|++||||+|||++||+++|+.|+.+||++++++|+++||++|+.|++++|++|+++|+.++++|+++|+.|.+.+.
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~~ 114 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLT 114 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999987775
Q ss_pred C
Q psy2633 627 G 627 (764)
Q Consensus 627 ~ 627 (764)
+
T Consensus 115 p 115 (238)
T 3tmm_A 115 P 115 (238)
T ss_dssp H
T ss_pred H
Confidence 4
No 38
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2e-16 Score=141.02 Aligned_cols=69 Identities=14% Similarity=0.302 Sum_probs=65.8
Q ss_pred ccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHH---HHhhhccCHHHHHHHHHHHHHHHHHHHHHH
Q psy2633 548 KKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKG---GELWKTVSSKEKAEYDEKVNKAKEDYNEAL 618 (764)
Q Consensus 548 ~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~l---ge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em 618 (764)
..++++||||+||||+|++++|++|+.+ ++++++|+++| |++|+.|++++|++|+++|+++|++|.+++
T Consensus 5 ~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 5 SSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999999998 89999999999 999999999999999999999999998876
No 39
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.61 E-value=6.1e-16 Score=157.97 Aligned_cols=79 Identities=23% Similarity=0.410 Sum_probs=75.3
Q ss_pred cCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q psy2633 549 KDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGG 627 (764)
Q Consensus 549 kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~~~ 627 (764)
..|++||||+||||+||+++|+.|+.+||++++++|+++||++|+.|++++|++|+++|+.++++|.++|+.|...+.+
T Consensus 5 ~~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp 83 (214)
T 3tq6_A 5 VLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTP 83 (214)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCH
Confidence 3478999999999999999999999999999999999999999999999999999999999999999999999877654
No 40
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.58 E-value=1.9e-16 Score=161.75 Aligned_cols=79 Identities=28% Similarity=0.426 Sum_probs=72.6
Q ss_pred cccccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2633 545 KRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKES 624 (764)
Q Consensus 545 ~kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~ 624 (764)
++..+||++||||+||||+||+++|+.|+.+||+ +|++.||++|++|++++|++|+++|++++++|.++|++|+++
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~ 181 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 181 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456899999999999999999999999876654 999999999999999999999999999999999999999988
Q ss_pred CCC
Q psy2633 625 GGG 627 (764)
Q Consensus 625 ~~~ 627 (764)
...
T Consensus 182 ~~~ 184 (214)
T 3tq6_A 182 MIE 184 (214)
T ss_dssp HHH
T ss_pred Ccc
Confidence 744
No 41
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.56 E-value=2.1e-16 Score=163.78 Aligned_cols=80 Identities=28% Similarity=0.415 Sum_probs=73.2
Q ss_pred cccccCCCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2633 545 KRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKES 624 (764)
Q Consensus 545 ~kk~kdp~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~ 624 (764)
++..+||++||||+|||||||+++|++|+.+||+ +|++.||++|++|++++|++|+++|++++++|+++|++|+++
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k 213 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 213 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456899999999999999999999999877665 999999999999999999999999999999999999999988
Q ss_pred CCCC
Q psy2633 625 GGGQ 628 (764)
Q Consensus 625 ~~~~ 628 (764)
....
T Consensus 214 ~~~~ 217 (238)
T 3tmm_A 214 MIEV 217 (238)
T ss_dssp HHHT
T ss_pred Cccc
Confidence 6443
No 42
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.55 E-value=8.6e-15 Score=142.35 Aligned_cols=75 Identities=29% Similarity=0.513 Sum_probs=72.4
Q ss_pred CCCCCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy2633 551 KNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESG 625 (764)
Q Consensus 551 p~~PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~~~~ 625 (764)
|++||||++|||+|+++.|.+|+.+||++++++|+++||++|+.|++++|++|.++|+.++++|..+|+.|....
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k 76 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRK 76 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhcccccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999998654
No 43
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.038 Score=54.85 Aligned_cols=79 Identities=16% Similarity=0.349 Sum_probs=68.4
Q ss_pred CceeEEEecCCceeeecc-----------CCeEEecCCeeEEEEEeecCccceEeEEEEEcCCceEEEeccchhhHhhHH
Q psy2633 348 AAAGYIYPLERGFIFIHK-----------PPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLF 416 (764)
Q Consensus 348 a~~G~LyPL~~~lifl~K-----------Pp~~I~~~eIe~V~feR~~~~~rtFDm~i~~K~~~~~~Fs~I~~eE~~~L~ 416 (764)
...|.|-..+.+|.|=.. -++.|+-+||..|...|+. |.|-|.|.+|++.+++|.....++++.|.
T Consensus 35 ~~~G~lkla~~glgWK~~~~tG~~~~~~~k~~~i~~sdI~~a~W~r~~---rg~~LrI~~K~g~~~~fdGF~~~D~~~L~ 111 (191)
T 3f5r_A 35 KFSGRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGC---RGYDLKINTKNQGVIQLDGFSQDDYNLIK 111 (191)
T ss_dssp SSCEEEEEETTEEEEEECCSSTTTHHHHCCCEEEEGGGEEEEEEEECS---SSEEEEEEESSSCEEEEEEECGGGHHHHH
T ss_pred CcccEEEEcCCceEEeecCCCCccccccCceEEEcHHHcCeEEEEEcc---CCcEEEEEECCCceEEecCCCHHHHHHHH
Confidence 357888888888888543 6788999999999999963 88999999999999999999999999999
Q ss_pred HHHhhc-Cceeeec
Q psy2633 417 DFIREK-KLRVKNT 429 (764)
Q Consensus 417 ~~l~~k-~i~I~n~ 429 (764)
.||+.. +|.+...
T Consensus 112 ~~fk~~f~i~Le~k 125 (191)
T 3f5r_A 112 NDFHRRFNIQVEQR 125 (191)
T ss_dssp HHHHHHHCCCCEEC
T ss_pred HHHHHHcCCCceee
Confidence 999986 7766553
No 44
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=92.93 E-value=0.14 Score=53.32 Aligned_cols=77 Identities=23% Similarity=0.327 Sum_probs=66.4
Q ss_pred ccceEEEecCceeeeeCCCCceEEecCCCcceeEEEEe------eCceeEEEEeeCC-ceEEecCCChhhHHHHHHHHHH
Q psy2633 19 CPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKL------VGTWALRIFLKNG-SLHRFAGFKETEIDKICSFFKT 91 (764)
Q Consensus 19 ~~G~lk~~~~g~~~k~~~~g~~~~i~~~di~~~~w~r~------~~~~~l~i~~~~~-~~~~f~Gf~~~d~~~l~~~~~~ 91 (764)
..|-|=.-+.||-|=. + -++.|+-++|.+|.++|+ .|.|.|.|.+++| ..|.|.+...+++..|.+||++
T Consensus 174 ~eG~LypL~~gflF~~-K--P~~~i~~~~I~sV~fsrvg~~~~~~rTFdl~v~~k~g~~~~~Fs~IdreE~~~L~~ylk~ 250 (261)
T 2gcl_A 174 NEGYLYPLDNAFFFLT-K--PTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKS 250 (261)
T ss_dssp EEEEEEECSSEEEEES-S--SCEEEEGGGEEEEEEEC--------CEEEEEEEESTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred CceEEEEecCceEEee-C--CcEEEEhhHeeEEEEEeccCCcccCceEEEEEEEcCCCccEEEcccCHHHHHHHHHHHHH
Confidence 5689999999999953 3 579999999999999996 3889999999999 9999999999999999999998
Q ss_pred hcCCCCCc
Q psy2633 92 NFKIDVPE 99 (764)
Q Consensus 92 ~~~~~l~~ 99 (764)
+ ++.+.+
T Consensus 251 k-~l~ikn 257 (261)
T 2gcl_A 251 K-NLRVKN 257 (261)
T ss_dssp T-TCCEEC
T ss_pred c-CCeeec
Confidence 7 655443
No 45
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Probab=88.99 E-value=0.54 Score=47.98 Aligned_cols=71 Identities=23% Similarity=0.379 Sum_probs=63.7
Q ss_pred ccceEEEecCceeeeeCCCCceEEecCCCcceeEEEEee-CceeEEEEeeCCceEEecCCChhhHHHHHHHHHH
Q psy2633 19 CPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLV-GTWALRIFLKNGSLHRFAGFKETEIDKICSFFKT 91 (764)
Q Consensus 19 ~~G~lk~~~~g~~~k~~~~g~~~~i~~~di~~~~w~r~~-~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~ 91 (764)
..|.|=+-+.+|-|==.+ -+.-|+-++|.++.++|++ |.|-|.|.+++|.-|.|.-..++++..|.+|+++
T Consensus 165 keG~LyfL~~~ilFgf~K--P~l~i~~~dI~svs~Srv~~RTFdl~v~~k~g~e~eFsmIDq~E~~~Id~fvk~ 236 (237)
T 3fss_A 165 KEGTLYFLPDHIIFGFKK--PILLLDASDIESITYSSITRLTFNASLVTKDGEKYEFSMIDQTEYAKIDDYVKR 236 (237)
T ss_dssp SEEEEEECSSEEEEESSS--SCEEEEGGGEEEEEEESCCSSEEEEEEEETTSCEEEEEEEEGGGHHHHHHHHHC
T ss_pred CCeEEEEecCceEEecCC--CeEEEEehhEEEEEEEeccCcEEEEEEEECCCCeEEEeecCHHHHHHHHHHHhc
Confidence 689999999999993112 4789999999999999986 8999999999999999999999999999999985
No 46
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=85.29 E-value=3.6 Score=37.52 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=62.0
Q ss_pred cccceEEEecC----ceeeeeCCCCceEEecCCCcceeEEEEee-CceeEEEEeeC--------C-----------ceEE
Q psy2633 18 LCPGKLKITDQ----NIVFKNKKTGKVEQINGPDLDFVNWQKLV-GTWALRIFLKN--------G-----------SLHR 73 (764)
Q Consensus 18 ~~~G~lk~~~~----g~~~k~~~~g~~~~i~~~di~~~~w~r~~-~~~~l~i~~~~--------~-----------~~~~ 73 (764)
...|.|.|+.. .|.|++..++++++|+-+.|..++=.... ...-|||+.+- + .++.
T Consensus 11 Kk~G~lti~eD~~p~~l~W~p~~g~~~isI~l~~It~LQqTp~ts~KvmLKI~~k~~~~~~~~~~~~~~~~~~p~~~~F~ 90 (115)
T 1y5o_A 11 KVSGIIAINEDVSPAELTWRSTDGDKVHTVVLSTIDKLQATPASSEKMMLRLIGKVDESKKRKDNEGNEVVPKPQRHMFS 90 (115)
T ss_dssp SCEEEEEEECSSSSCEEEEEESSSSCEEEEESTTCSEEEECCTTCSSEEEEEEECSCCSSSCCCCSSCCSSCCCEEEEEE
T ss_pred ecccEEEEccCCCcceEEEEECCCCccEEEEhhhhhhhhcCCCCCCceEEEEEEeccccccccCCCcCCCCCCcceEEEE
Confidence 35799999988 89999977799999999999998877754 89999999884 3 5788
Q ss_pred ecCCChhhHHHHHHHHHHh
Q psy2633 74 FAGFKETEIDKICSFFKTN 92 (764)
Q Consensus 74 f~Gf~~~d~~~l~~~~~~~ 92 (764)
|.. +.+.+.|+..|+..
T Consensus 91 Ftn--R~~~d~IKd~Lq~i 107 (115)
T 1y5o_A 91 FNN--RTVMDNIKMTLQQI 107 (115)
T ss_dssp ESC--HHHHHHHHHHHHHH
T ss_pred eCC--HHHHHHHHHHHHHH
Confidence 888 89999999988753
No 47
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=75.98 E-value=4.5 Score=36.57 Aligned_cols=75 Identities=13% Similarity=0.118 Sum_probs=55.4
Q ss_pred cccceEEEecCceeeeeCCCC-ceEEecCCCcceeEEEEee-CceeEEEEeeCCceEE--ecCC--ChhhHHHHHHHHHH
Q psy2633 18 LCPGKLKITDQNIVFKNKKTG-KVEQINGPDLDFVNWQKLV-GTWALRIFLKNGSLHR--FAGF--KETEIDKICSFFKT 91 (764)
Q Consensus 18 ~~~G~lk~~~~g~~~k~~~~g-~~~~i~~~di~~~~w~r~~-~~~~l~i~~~~~~~~~--f~Gf--~~~d~~~l~~~~~~ 91 (764)
+..|.|-|+..-|.|.....+ -.++++-++|...+-+.-+ -..+|+|.++++.-|. |..= ...|-+.++..|+.
T Consensus 19 K~dGtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~~~~~F~Ftn~~~a~~erd~VKd~L~~ 98 (108)
T 1pfj_A 19 KQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQ 98 (108)
T ss_dssp SCBCEEEEETTEEEEECSSSSSCSEEEETTTCCCEEECCSSSSSCEEEEECSSSCEEEEECCCSSCTTHHHHHHHHHHHH
T ss_pred cCCceEEEEcceEEEccCCCCCceEEEehhhhhcceeCCCCCccEEEEEEEeCCCceEEEEcCcHHHHHHHHHHHHHHHH
Confidence 356999999999999985443 4577789999997777754 8999999999886444 4441 34566677776654
Q ss_pred h
Q psy2633 92 N 92 (764)
Q Consensus 92 ~ 92 (764)
.
T Consensus 99 ~ 99 (108)
T 1pfj_A 99 L 99 (108)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>1j8r_A PAPG adhesin, pyelonephritic adhesin; PAG adhesin, GBO4, structural genomics, PSI, protein structure initiative; HET: NGA GLA GAL BGC; 1.80A {Escherichia coli} SCOP: b.2.3.3 PDB: 1j8s_A
Probab=64.63 E-value=3.4 Score=39.75 Aligned_cols=83 Identities=23% Similarity=0.431 Sum_probs=56.9
Q ss_pred eeeeeeeeeeeeEecceEEEEeCCeeeEEeeccccccccCCCceEEEEecCCCCCccceEEEEEecCCCCCCCCCChHHH
Q psy2633 102 LSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVEA 181 (764)
Q Consensus 102 ~~~~G~NwG~~~~~~~~l~f~v~~k~~feip~~~is~~~~~Knev~lef~~~d~~~d~L~emRf~vP~~~~~~~~~~~~~ 181 (764)
.-++|.-|-+..++|..|+|.++++ .|.+..=|+|.+-. .+|
T Consensus 100 ff~~Gy~WD~~~~~~grvC~~~G~~----------k~L~~kF~dl~f~~---------------~LP------------- 141 (196)
T 1j8r_A 100 FFLKGYKWDERAFDAGNLCQKPGEI----------TRLTEKFDDIIFKV---------------ALP------------- 141 (196)
T ss_dssp EEEEEEEEEEEECCCEESSCCTTCE----------EEECCCCCCEEEEE---------------ECC-------------
T ss_pred EEeccceeeeeecCCccEecCcchh----------hhhhhhhCcEEEEE---------------Ecc-------------
Confidence 7899999999999999999998843 34333344433322 223
Q ss_pred HHHHHhcccccccccCceeEEEcceeeecCCcceEEEE-eccceEEeec---cceeeeecCCeeeEEeeecCCC
Q psy2633 182 FKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKI-FNSFFQLHGK---TFDYKIPISTVLRMFTLPHKDG 251 (764)
Q Consensus 182 f~~~i~~~a~i~~~~g~~i~~f~~i~~ltPRGry~i~~-~~~~lrl~gk---t~d~kI~y~nI~r~F~lP~~d~ 251 (764)
+=-|.|+|++-| |-.+|+-|-- .-.|||||+.||| ||..+.
T Consensus 142 --------------------------~DLPkG~Y~~pv~yirGiQ~h~yd~~~~~yKmpy~~~K~---lP~~nt 186 (196)
T 1j8r_A 142 --------------------------ADLPLGDYSVKIPYTSGMQRHFASYLGARFKIPYNVAKT---LPRENE 186 (196)
T ss_dssp --------------------------TTCCSEEEEEEEEEEEEEEEEEESSTTCCCCCCHHHHTT---SCCCEE
T ss_pred --------------------------ccCCCCccccccchhhccchhhhhhhhhhccCcHHHHhc---CCCCCe
Confidence 124889999887 4456666632 2379999999998 566543
No 49
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13
Probab=59.60 E-value=42 Score=33.21 Aligned_cols=90 Identities=14% Similarity=0.285 Sum_probs=57.3
Q ss_pred eeccCCCcccCCC--------cceeeeeecCceeEEEecCCceeeec------cCCeE--EecC--CeeEEEEEeecCcc
Q psy2633 326 KITVPGSFRGHTG--------TSAVTCSYKAAAGYIYPLERGFIFIH------KPPIH--IRFE--EIATVNFARSGGST 387 (764)
Q Consensus 326 ki~~P~~F~s~~g--------~~~V~cs~ka~~G~LyPL~~~lifl~------KPp~~--I~~~--eIe~V~feR~~~~~ 387 (764)
+|+-|..|....- .--|.+.++...-++.+|++.||++- |-..| |||. -|..|.++-.
T Consensus 6 ~ii~p~D~dk~di~~~Ll~EdgE~I~~ayk~irD~~iFTNkRLI~vD~Qg~TGKK~~~~siPY~~~~I~~~siETA---- 81 (193)
T 3b77_A 6 QVIHPDDFDKAAADDYVLHEDGEKIYFLIKSKTDEYCFTNLALVHLDGESAVSSKRVLYRYPYAHYPIRHVMFETA---- 81 (193)
T ss_dssp EECCGGGSTTSGGGGGSCGGGTCCEEEEEECSSEEEEEESSEEEEEECCCC--CCCEEEEEETTTSCEEEEEEECC----
T ss_pred cccChhhCChhhhhhhccCCCCCEEeeeeeecceEEEEecchhheeccccccceeEEEEEeccCCCceeEEEEEec----
Confidence 3556776655531 22466888888889999999999975 33334 9999 9999999743
Q ss_pred ceEeEEEEEc---CCceEEEeccch---hhHhhHHHHHh
Q psy2633 388 RSFDFEIELK---SGVLHTFSSIEK---EEYGKLFDFIR 420 (764)
Q Consensus 388 rtFDm~i~~K---~~~~~~Fs~I~~---eE~~~L~~~l~ 420 (764)
.+|||-..+| .+.++.| .+++ ++...|...|.
T Consensus 82 GtfDlDaElki~i~~~~~~I-ef~K~~~~di~~lyk~L~ 119 (193)
T 3b77_A 82 GTVDLDVEIKFEIGGKHYSI-DVDKKQLEHVKDLYKALL 119 (193)
T ss_dssp CSSCCEEEEEEEETTEEEEE-EEEGGGHHHHHHHHHHHH
T ss_pred ceeccCccEEEEEcCceEEE-EeCCcchhhHHHHHHHHH
Confidence 3466655555 3455444 4455 34444444443
No 50
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=55.60 E-value=75 Score=28.91 Aligned_cols=76 Identities=9% Similarity=0.129 Sum_probs=55.0
Q ss_pred eeeeecCceeEEEecCC----ceeeecc---CCeEEecCCeeEEEEEeecCccceEeEEEEEcC--------C-------
Q psy2633 342 VTCSYKAAAGYIYPLER----GFIFIHK---PPIHIRFEEIATVNFARSGGSTRSFDFEIELKS--------G------- 399 (764)
Q Consensus 342 V~cs~ka~~G~LyPL~~----~lifl~K---Pp~~I~~~eIe~V~feR~~~~~rtFDm~i~~K~--------~------- 399 (764)
=.|+||-..|.|.-.++ .|.|.+- |++-|+++.|....=.. .++---=|.|+.|. +
T Consensus 5 gaa~yKKk~G~lti~eD~~p~~l~W~p~~g~~~isI~l~~It~LQqTp--~ts~KvmLKI~~k~~~~~~~~~~~~~~~~~ 82 (115)
T 1y5o_A 5 GAAIFEKVSGIIAINEDVSPAELTWRSTDGDKVHTVVLSTIDKLQATP--ASSEKMMLRLIGKVDESKKRKDNEGNEVVP 82 (115)
T ss_dssp EEEESSSCEEEEEEECSSSSCEEEEEESSSSCEEEEESTTCSEEEECC--TTCSSEEEEEEECSCCSSSCCCCSSCCSSC
T ss_pred ceeEEEecccEEEEccCCCcceEEEEECCCCccEEEEhhhhhhhhcCC--CCCCceEEEEEEeccccccccCCCcCCCCC
Confidence 46999999999999999 7888652 44559999999754332 23333445566662 2
Q ss_pred ----ceEEEeccchhhHhhHHHHHhh
Q psy2633 400 ----VLHTFSSIEKEEYGKLFDFIRE 421 (764)
Q Consensus 400 ----~~~~Fs~I~~eE~~~L~~~l~~ 421 (764)
-.++|++ |.+.++|++.|..
T Consensus 83 ~p~~~~F~Ftn--R~~~d~IKd~Lq~ 106 (115)
T 1y5o_A 83 KPQRHMFSFNN--RTVMDNIKMTLQQ 106 (115)
T ss_dssp CCEEEEEEESC--HHHHHHHHHHHHH
T ss_pred CcceEEEEeCC--HHHHHHHHHHHHH
Confidence 2567777 9999999999976
No 51
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=54.48 E-value=37 Score=33.01 Aligned_cols=87 Identities=17% Similarity=0.254 Sum_probs=56.3
Q ss_pred eeeeeeeee--eeeeeEecceEEEEeCCeeeEEeeccccccccCCCc-------eEEEEecC--C-------------CC
Q psy2633 100 KELSVRGWN--WGGTKFIGNVLSFDVNNTTAFEIPLRDVSQCTTGKN-------EVTVEFHP--N-------------DE 155 (764)
Q Consensus 100 ~e~~~~G~N--wG~~~~~~~~l~f~v~~k~~feip~~~is~~~~~Kn-------ev~lef~~--~-------------d~ 155 (764)
..+.+.+++ =|++.|....|.+.-+....|.||+..|+==+..+. =|-+++.. + |+
T Consensus 32 v~~vl~~~~~g~GtLyVt~~~l~W~~~~~~G~sI~YpsIsLHAIsrd~~~~p~~clY~Qld~~~~~~~~~~~~e~~~~Dd 111 (171)
T 1zyi_A 32 TEAVLNGKGLGTGTLYIAESRLSWLDGSGLGFSLEYPTISLHAVSRDLNAYPREHLYVMVNAKFGEESKESVAEEEDSDD 111 (171)
T ss_dssp EEEEBTTBCCCEEEEEEETTEEEEEETTTEEEEESSCCCSEEECCSSCSSCCSCCEEEEEECCCCSSCSSSCCCSCCSSC
T ss_pred EEEEECCCccCceEEEEEcCEEEEEcCCCcEEEeecCeEEEEEEecCCCCCCCceEEEEEecccCccccccccccccccc
Confidence 344444444 378899999998887778999999999975443222 23444332 1 11
Q ss_pred CccceEEEEEecCCCCCCCCCChHHHHHHHHhccccc
Q psy2633 156 AAESLIEMRFYIPTNEIAGDTDPVEAFKDSVMNQASV 192 (764)
Q Consensus 156 ~~d~L~emRf~vP~~~~~~~~~~~~~f~~~i~~~a~i 192 (764)
....++||||.-+ . ...++.+++++-.-+.+
T Consensus 112 e~~~~~EirlvP~-d-----~s~l~~if~Ams~Cq~L 142 (171)
T 1zyi_A 112 DVEPIAEFRFVPS-D-----KSALEAMFTAMCECQAL 142 (171)
T ss_dssp CSCSEEEEEEEES-C-----HHHHHHHHHHHHHHHHC
T ss_pred cccceeEEEEeCC-C-----ccHHHHHHHHHHHHHHc
Confidence 1356999999743 2 34677888887665554
No 52
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=49.88 E-value=84 Score=29.01 Aligned_cols=81 Identities=10% Similarity=0.109 Sum_probs=49.8
Q ss_pred eeeeeecCceeEEEecCCceeeecc-------CCeE-EecCCeeEEEEEeecCccceEeEEEEEcCC-ceEEEeccchhh
Q psy2633 341 AVTCSYKAAAGYIYPLERGFIFIHK-------PPIH-IRFEEIATVNFARSGGSTRSFDFEIELKSG-VLHTFSSIEKEE 411 (764)
Q Consensus 341 ~V~cs~ka~~G~LyPL~~~lifl~K-------Pp~~-I~~~eIe~V~feR~~~~~rtFDm~i~~K~~-~~~~Fs~I~~eE 411 (764)
-|.+.|+.-...+.+|++-||++-+ --++ |||..|..|.++-.|+--....|.|.+.++ .++.|.=--...
T Consensus 33 ~I~~ayk~iRD~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siETAG~fDlDaElki~isg~~~pi~~~f~k~~d 112 (126)
T 3hsa_A 33 ELQLAYXMVRDLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVETAGTFDMDAELXLWISGQHEPLVXELXRGTD 112 (126)
T ss_dssp CEEEEEECSSEEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEEESTTSCEEEEEEEETTCSSCEEEEECTTSC
T ss_pred EEEEEehhcCceEEEccchheEEecCcCcccceEEEEeccceeeEEEEeccccccCCceEEEEEcCCceEEEEeccCccc
Confidence 3556677778899999999999754 3444 999999999998544311222244444433 335543333344
Q ss_pred HhhHHHHHhh
Q psy2633 412 YGKLFDFIRE 421 (764)
Q Consensus 412 ~~~L~~~l~~ 421 (764)
...|...|..
T Consensus 113 i~~i~k~La~ 122 (126)
T 3hsa_A 113 VVGIQXTIAR 122 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 53
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=48.36 E-value=90 Score=29.83 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=37.1
Q ss_pred CcceeEEEEeeCceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcC
Q psy2633 47 DLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFK 94 (764)
Q Consensus 47 di~~~~w~r~~~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~ 94 (764)
+|-.+.|.+-++.+.|||++-.. +|..-+|-+.++..+...+.
T Consensus 27 eLvdve~~~~g~~~~LrV~ID~~-----~gi~lddC~~vSr~is~~LD 69 (164)
T 1ib8_A 27 ELVDIEYGKIGSDMILSIFVDKP-----EGITLNDTADLTEMISPVLD 69 (164)
T ss_dssp EEEEEEEEEETTEEEEEEEEECS-----SCCCHHHHHHHHHHHGGGTT
T ss_pred EEEEEEEEecCCCcEEEEEEECC-----CCCCHHHHHHHHHHHHHHhc
Confidence 56678888888999999998543 58999999999999999998
No 54
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=44.70 E-value=4.9 Score=42.69 Aligned_cols=27 Identities=4% Similarity=0.139 Sum_probs=17.8
Q ss_pred CCceEEecCCChhhHHHHHHHHHHhcC
Q psy2633 68 NGSLHRFAGFKETEIDKICSFFKTNFK 94 (764)
Q Consensus 68 ~~~~~~f~Gf~~~d~~~l~~~~~~~~~ 94 (764)
.|.-.+|.++...++..|...++..-.
T Consensus 7 ~~~~L~~~~l~~~~~~~l~~~l~~~~~ 33 (386)
T 2ca6_A 7 EGKSLKLDAITTEDEKSVFAVLLEDDS 33 (386)
T ss_dssp TTCCCEESSCCSHHHHTTSHHHHHCSC
T ss_pred cCcccccCCCCHHHHHHHHHHHhcCCC
Confidence 455567777777777777777765533
No 55
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=36.29 E-value=1.5e+02 Score=26.55 Aligned_cols=76 Identities=16% Similarity=0.259 Sum_probs=53.7
Q ss_pred eeecCceeEEEecCCceeeec--cCCeE--EecCCeeEEEEEeecCccceEeEEEEEcCCc--eEEEecc--chhhHhhH
Q psy2633 344 CSYKAAAGYIYPLERGFIFIH--KPPIH--IRFEEIATVNFARSGGSTRSFDFEIELKSGV--LHTFSSI--EKEEYGKL 415 (764)
Q Consensus 344 cs~ka~~G~LyPL~~~lifl~--KPp~~--I~~~eIe~V~feR~~~~~rtFDm~i~~K~~~--~~~Fs~I--~~eE~~~L 415 (764)
..||-..|.||-....+.|.+ ++++. +.|.+|..--- +--+.----|-|+++++. .++|++= .+.|-+.|
T Consensus 15 v~yKK~dGtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~qq~--SP~~k~KVqLqi~l~~~~~~~F~Ftn~~~a~~erd~V 92 (108)
T 1pfj_A 15 VRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKI--SPEGKAKIQLQLVLHAGDTTNFHFSNESTAVKERDAV 92 (108)
T ss_dssp CBCSSCBCEEEEETTEEEEECSSSSSCSEEEETTTCCCEEE--CCSSSSSCEEEEECSSSCEEEEECCCSSCTTHHHHHH
T ss_pred heeecCCceEEEEcceEEEccCCCCCceEEEehhhhhccee--CCCCCccEEEEEEEeCCCceEEEEcCcHHHHHHHHHH
Confidence 467888999999999999976 33333 57999986443 223444566788888654 5567773 47888888
Q ss_pred HHHHhh
Q psy2633 416 FDFIRE 421 (764)
Q Consensus 416 ~~~l~~ 421 (764)
++-|..
T Consensus 93 Kd~L~~ 98 (108)
T 1pfj_A 93 KDLLQQ 98 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 56
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=29.63 E-value=1.8e+02 Score=32.85 Aligned_cols=73 Identities=19% Similarity=0.295 Sum_probs=53.4
Q ss_pred ecCceeEEEecCCceeeec--cCCeEEecCCeeEEEEEeecCccceEeEEEEEcCCceEEEeccchh-hHhhHHHHHhh
Q psy2633 346 YKAAAGYIYPLERGFIFIH--KPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKE-EYGKLFDFIRE 421 (764)
Q Consensus 346 ~ka~~G~LyPL~~~lifl~--KPp~~I~~~eIe~V~feR~~~~~rtFDm~i~~K~~~~~~Fs~I~~e-E~~~L~~~l~~ 421 (764)
.++..|.||-|.--|+|+. +..++|++.-|..|+ +...+.+..-|.|..|+-..++|. ++.+ +...|.+-|..
T Consensus 22 ~~~~~GtL~lTn~~LiF~~~~~~e~wi~~~~I~~Ve--K~~~~~~~~~l~I~CKDfr~~~f~-f~~~~~~~~v~~sL~~ 97 (512)
T 2yf0_A 22 NKSLTGTLYLTATHLLFIDSHQKETWILHHHIASVE--KLALTTSGCPLVIQCKNFRTVHFI-VPRERDCHDIYNSLLQ 97 (512)
T ss_dssp --CCEEEEEECSSEEEEEESSSCEEEEEGGGEEEEE--ECCCBTTBEEEEEEETTSCEEEEE-ESCHHHHHHHHHHHHH
T ss_pred CCceeEEEEEECCEEEEeCCCCCceEecccceeEEE--EecCCCCCceEEEEecCCcEEEEE-eCChHHHHHHHHHHHh
Confidence 3567999999999999987 446789999999996 433344557799999998888886 4443 34556666654
No 57
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=27.95 E-value=76 Score=26.66 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=37.4
Q ss_pred eeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCCCCceeeeeee
Q psy2633 60 WALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRG 106 (764)
Q Consensus 60 ~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~l~~~e~~~~G 106 (764)
.+|.|.+-+|..+.+.=-...-+..|+..+...+++.....-|...|
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G 48 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 48 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETT
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECC
Confidence 56777777888888876677779999999999999988777666544
No 58
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=27.93 E-value=61 Score=32.21 Aligned_cols=47 Identities=15% Similarity=0.425 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHH-HHhhhccCHHHHHHHHHHHHH-HHHHHHHHHHhhhh
Q psy2633 577 PGISFTEIAKKG-GELWKTVSSKEKAEYDEKVNK-AKEDYNEALKAYKE 623 (764)
Q Consensus 577 P~~s~~eisK~l-ge~Wk~Ls~eeK~~Y~~kA~~-~k~rY~~em~~Y~~ 623 (764)
|-..+..+++.+ |.-|+.+++++|+.|.+.-+. ...-|-..+..|..
T Consensus 70 p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~ 118 (211)
T 2qgu_A 70 PRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRN 118 (211)
T ss_dssp GGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred hhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 566788888764 899999999999999987666 55668899999963
No 59
>3u12_A USP37 protein; structural genomics, PH-domain, hydrolase, structural genomi consortium, SGC; 2.08A {Homo sapiens}
Probab=25.88 E-value=1.3e+02 Score=28.17 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=43.8
Q ss_pred EEecCC-CcceeEEEEe-eCceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCC
Q psy2633 41 EQINGP-DLDFVNWQKL-VGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKID 96 (764)
Q Consensus 41 ~~i~~~-di~~~~w~r~-~~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~ 96 (764)
.++.=+ .|+++...-. .+-..|.+-++++.+..++.....|.++|+.|+..-.--.
T Consensus 65 ktFQL~nNIksVvlr~~g~~qn~LhLTlknn~fLfIdKLs~~DaeqLK~FLd~v~Qnk 122 (141)
T 3u12_A 65 RIFQLSHNIKNVVLRPSGAKQSRLMLTLQDNSFLSIDKVPSKDAEEMRLFLDAVHQNR 122 (141)
T ss_dssp EEEECTTTEEEEEEEECSTTEEEEEEEETTCCEEEEEEEEHHHHHHHHHHHHHHHTTC
T ss_pred EEEEcccceeeEEEecCCCccceEEEEEecCcEEEEecCCHHHHHHHHHHHHHhcccC
Confidence 444433 5888766654 3667899999999999999999999999999998864433
No 60
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=25.81 E-value=74 Score=26.44 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=37.3
Q ss_pred ceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCCCCceeeeeee
Q psy2633 59 TWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRG 106 (764)
Q Consensus 59 ~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~l~~~e~~~~G 106 (764)
..+|.|.+-+|..+.+.=-...-+..|+..+...+++......|...|
T Consensus 5 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~G 52 (90)
T 4dwf_A 5 SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQG 52 (90)
T ss_dssp EEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred EEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC
Confidence 356666666787777766667779999999999999998887776655
No 61
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=25.47 E-value=75 Score=26.29 Aligned_cols=53 Identities=8% Similarity=0.082 Sum_probs=39.7
Q ss_pred EeeCceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCCCCceeeeeeee
Q psy2633 55 KLVGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGW 107 (764)
Q Consensus 55 r~~~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~l~~~e~~~~G~ 107 (764)
+.+...+|.|...+|..+.+.=-...-+..|+..+...+|+......|..+|+
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk 65 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGR 65 (88)
T ss_dssp --CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTE
T ss_pred cCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCE
Confidence 34455677777767877777655667799999999999999988888876653
No 62
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=22.11 E-value=1.1e+02 Score=26.02 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=38.2
Q ss_pred CceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCCCCceeeeeee
Q psy2633 58 GTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRG 106 (764)
Q Consensus 58 ~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~l~~~e~~~~G 106 (764)
+..+|.|..-+|..+.+.=-...-+..|+..+...+++......|..+|
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G 69 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG 69 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECC
Confidence 4567777777888788876666679999999999999988877776554
No 63
>2ehp_A AQ_1627 protein; putative protein, NPPSFA, national project protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eiu_A
Probab=21.84 E-value=1.2e+02 Score=26.99 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=35.8
Q ss_pred eeCceeEEEEeeCCc--eEEecCCChhhHHHHHHHHHHhcCCCCCc
Q psy2633 56 LVGTWALRIFLKNGS--LHRFAGFKETEIDKICSFFKTNFKIDVPE 99 (764)
Q Consensus 56 ~~~~~~l~i~~~~~~--~~~f~Gf~~~d~~~l~~~~~~~~~~~l~~ 99 (764)
++.+-..+++++-|. +..|.|..+.|+.+|...+-..|+|.-.+
T Consensus 72 vgeg~e~~lflk~GeidvL~F~gL~e~D~kKLEsILFgRyniPrKe 117 (126)
T 2ehp_A 72 VGKGGDIKLFLQKGEIYVLEFQPLSETDIKKLESILFGRAPIPKKT 117 (126)
T ss_dssp ESSCCSEEEEEECSSSEEEEEESCCHHHHHHHHHHHTSSSCCCCCC
T ss_pred eecCCceeEEEeeCcEEEEEEcCCChhhHHHHHHHhhccCCCCccc
Confidence 445556777888774 77899999999999999999999987443
No 64
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=20.45 E-value=1.1e+02 Score=25.49 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=37.1
Q ss_pred CceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCCCCceeeeeee
Q psy2633 58 GTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRG 106 (764)
Q Consensus 58 ~~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~l~~~e~~~~G 106 (764)
...+|.|.+-+|..+.+.=-...-+..|+..+...+|+.....-|...|
T Consensus 16 ~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~G 64 (91)
T 3v6c_B 16 GSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 64 (91)
T ss_dssp CSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred CeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECC
Confidence 4456666666777777765566779999999999999988877776655
No 65
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=20.37 E-value=1.2e+02 Score=24.30 Aligned_cols=48 Identities=6% Similarity=-0.035 Sum_probs=37.5
Q ss_pred ceeEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCCCCceeeeeee
Q psy2633 59 TWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRG 106 (764)
Q Consensus 59 ~~~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~l~~~e~~~~G 106 (764)
..++.|.+.+|..+.+.=-...-+..|+..+....|+.....-|...|
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G 51 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEG 51 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECC
Confidence 456677766787777766667779999999999999998887776554
No 66
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=20.35 E-value=66 Score=27.96 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=35.6
Q ss_pred EeeCceeEEEEee-CCceEEecCCChhhHHHHHHHHHHhcCCCCCceeeeeeee
Q psy2633 55 KLVGTWALRIFLK-NGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGW 107 (764)
Q Consensus 55 r~~~~~~l~i~~~-~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~l~~~e~~~~G~ 107 (764)
++..+.+++|.++ +|..+.+.=-...-+..|+..+...+|+.....-|..+|.
T Consensus 22 ~l~~~m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk 75 (101)
T 3m63_B 22 YFQGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGK 75 (101)
T ss_dssp -------CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTE
T ss_pred cccCCcEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCE
Confidence 3444555566665 6666777655666799999999999999988888876653
No 67
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=20.22 E-value=1.3e+02 Score=25.04 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=36.6
Q ss_pred eEEEEeeCCceEEecCCChhhHHHHHHHHHHhcCCCCCceeeeeee
Q psy2633 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRG 106 (764)
Q Consensus 61 ~l~i~~~~~~~~~f~Gf~~~d~~~l~~~~~~~~~~~l~~~e~~~~G 106 (764)
+|.|.+-+|..+.+.=-...-+..|+..+...+++.....-|..+|
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~G 47 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSG 47 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECC
Confidence 4666666788888876677779999999999999988877776554
Done!