Your job contains 1 sequence.
>psy2633
MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW
ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS
FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE
AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV
LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE
GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF
IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR
EKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDEDDEDEDESTDEDF
NPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKDKESS
GGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEK
AEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKPAKKKETASTAVSPHKVKSK
EFIESNGSSSDSDDDKKASSKRKRDSDEDSKAKTKKKKEKSESESDSGESEKEKKSKSKP
KGDKSKSKSKKEDEIDDEEYDEPVESTPPSSDAGSDASSSEDDD
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2633
(764 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0010278 - symbol:Ssrp "Structure specific recognit... 1882 1.8e-207 2
ZFIN|ZDB-GENE-031118-9 - symbol:ssrp1a "structure specifi... 1696 1.4e-174 1
UNIPROTKB|Q08945 - symbol:SSRP1 "FACT complex subunit SSR... 1502 2.8e-174 2
UNIPROTKB|Q9W602 - symbol:ssrp1 "FACT complex subunit SSR... 1670 4.6e-174 2
MGI|MGI:107912 - symbol:Ssrp1 "structure specific recogni... 1503 5.9e-174 2
RGD|621143 - symbol:Ssrp1 "structure specific recognition... 1503 5.9e-174 2
UNIPROTKB|Q04931 - symbol:Ssrp1 "FACT complex subunit SSR... 1503 5.9e-174 2
UNIPROTKB|I3LLA8 - symbol:SSRP1 "Uncharacterized protein"... 1502 7.5e-174 2
UNIPROTKB|F6QYV9 - symbol:SSRP1 "Uncharacterized protein"... 1498 2.5e-173 2
UNIPROTKB|B6ZLK1 - symbol:SSRP1 "Structure-specific recog... 1673 3.8e-172 1
UNIPROTKB|Q04678 - symbol:SSRP1 "FACT complex subunit SSR... 1673 3.8e-172 1
ZFIN|ZDB-GENE-041008-209 - symbol:ssrp1b "structure speci... 1660 9.1e-171 1
UNIPROTKB|F1Q2J2 - symbol:SSRP1 "Uncharacterized protein"... 1470 2.3e-170 2
UNIPROTKB|J9NYX4 - symbol:SSRP1 "Uncharacterized protein"... 1015 2.8e-122 2
WB|WBGene00001974 - symbol:hmg-4 species:6239 "Caenorhabd... 1133 6.4e-115 1
WB|WBGene00001973 - symbol:hmg-3 species:6239 "Caenorhabd... 1017 2.9e-114 2
TAIR|locus:2098413 - symbol:HMG "high mobility group" spe... 886 9.6e-89 1
POMBASE|SPBC609.05 - symbol:pob3 "FACT complex subunit Po... 787 3.0e-78 1
SGD|S000004534 - symbol:POB3 "Subunit of the heterodimeri... 542 7.6e-74 2
ASPGD|ASPL0000002272 - symbol:AN6687 species:162425 "Emer... 518 1.3e-72 3
GENEDB_PFALCIPARUM|PF14_0393 - symbol:PF14_0393 "structur... 670 2.6e-69 2
UNIPROTKB|Q8IL56 - symbol:PF14_0393 "Structure specific r... 670 2.6e-69 2
UNIPROTKB|E9PMD4 - symbol:SSRP1 "FACT complex subunit SSR... 688 9.2e-68 1
DICTYBASE|DDB_G0290331 - symbol:ssrp1 "FACT complex subun... 623 2.6e-63 2
CGD|CAL0005561 - symbol:POB3 species:5476 "Candida albica... 570 2.9e-55 1
UNIPROTKB|Q5ALL8 - symbol:POB3 "FACT complex subunit POB3... 570 2.9e-55 1
UNIPROTKB|E9PPZ7 - symbol:SSRP1 "FACT complex subunit SSR... 549 4.9e-53 1
FB|FBgn0010228 - symbol:HmgZ "HMG protein Z" species:7227... 212 2.3e-16 1
FB|FBgn0004362 - symbol:HmgD "High mobility group protein... 207 7.9e-16 1
UNIPROTKB|P40618 - symbol:HMGB3 "High mobility group prot... 152 5.8e-12 2
UNIPROTKB|F1NPU8 - symbol:HMGB2 "High mobility group prot... 154 7.3e-12 2
ASPGD|ASPL0000037691 - symbol:AN2885 species:162425 "Emer... 164 3.4e-11 1
MGI|MGI:1098219 - symbol:Hmgb3 "high mobility group box 3... 145 1.4e-10 2
ZFIN|ZDB-GENE-030131-341 - symbol:hmgb1a "high-mobility g... 157 1.9e-10 1
RGD|1564407 - symbol:Hmgb3 "high mobility group box 3" sp... 144 3.0e-10 2
RGD|1559962 - symbol:RGD1559962 "similar to High mobility... 153 5.2e-10 1
UNIPROTKB|P26584 - symbol:HMGB2 "High mobility group prot... 148 1.0e-09 2
UNIPROTKB|F1MF42 - symbol:LOC618297 "Uncharacterized prot... 150 1.1e-09 1
UNIPROTKB|G4MS97 - symbol:MGG_04489 "Non-histone chromoso... 149 1.4e-09 1
UNIPROTKB|P36194 - symbol:HMGB1 "High mobility group prot... 148 1.8e-09 1
UNIPROTKB|F1N927 - symbol:HMGB1 "High mobility group prot... 147 2.1e-09 2
UNIPROTKB|Q9YH06 - symbol:HMG1 "High mobility group 1 pro... 147 2.4e-09 2
UNIPROTKB|D4A9T3 - symbol:D4A9T3 "Uncharacterized protein... 146 2.9e-09 1
UNIPROTKB|P07156 - symbol:HMGB1 "High mobility group prot... 146 2.9e-09 1
UNIPROTKB|E1BIU3 - symbol:LOC532409 "Uncharacterized prot... 145 3.7e-09 1
FB|FBgn0038979 - symbol:CG7046 species:7227 "Drosophila m... 145 3.7e-09 1
UNIPROTKB|P40673 - symbol:HMGB2 "High mobility group prot... 150 5.4e-09 1
UNIPROTKB|P26583 - symbol:HMGB2 "High mobility group prot... 150 5.4e-09 1
RGD|1561694 - symbol:RGD1561694 "similar to High mobility... 150 5.4e-09 1
FB|FBgn0038978 - symbol:CG7045 species:7227 "Drosophila m... 143 6.2e-09 1
UNIPROTKB|E2QY30 - symbol:HMGB2 "Uncharacterized protein"... 150 6.5e-09 1
UNIPROTKB|P17741 - symbol:HMGB2 "High mobility group prot... 150 6.5e-09 1
RGD|1564519 - symbol:RGD1564519 "similar to High mobility... 150 6.5e-09 1
RGD|69291 - symbol:Hmgb2 "high mobility group box 2" spec... 150 6.5e-09 1
UNIPROTKB|E7EQU1 - symbol:HMGB3 "High mobility group prot... 142 7.9e-09 1
UNIPROTKB|E7ES08 - symbol:HMGB3 "High mobility group prot... 142 7.9e-09 1
UNIPROTKB|Q32L31 - symbol:HMGB3 "High mobility group prot... 145 1.1e-08 1
UNIPROTKB|F1RQ19 - symbol:LOC100517745 "Uncharacterized p... 146 1.2e-08 1
UNIPROTKB|J9NVS3 - symbol:HMGB3 "Uncharacterized protein"... 150 1.6e-08 1
TAIR|locus:505006135 - symbol:HMGB2 "high mobility group ... 139 1.7e-08 1
MGI|MGI:96157 - symbol:Hmgb2 "high mobility group box 2" ... 147 2.3e-08 1
RGD|1585821 - symbol:LOC680968 "similar to High mobility ... 146 4.4e-08 1
RGD|1589841 - symbol:LOC690940 "similar to High mobility ... 146 4.7e-08 1
RGD|1593466 - symbol:LOC689398 "similar to High mobility ... 146 4.7e-08 1
RGD|1586285 - symbol:LOC691220 "hypothetical protein LOC6... 146 4.7e-08 1
RGD|1588313 - symbol:LOC679451 "similar to High mobility ... 146 4.7e-08 1
RGD|1596979 - symbol:LOC678705 "hypothetical protein LOC6... 146 4.7e-08 1
UNIPROTKB|P10103 - symbol:HMGB1 "High mobility group prot... 146 5.0e-08 1
UNIPROTKB|Q6YKA4 - symbol:HMGB1 "High mobility group prot... 146 5.0e-08 1
UNIPROTKB|P09429 - symbol:HMGB1 "High mobility group prot... 146 5.0e-08 1
UNIPROTKB|F2Z594 - symbol:HMGB1 "High mobility group prot... 146 5.0e-08 1
RGD|1591683 - symbol:LOC681718 "similar to High mobility ... 146 5.0e-08 1
RGD|2802 - symbol:Hmgb1 "high mobility group box 1" speci... 146 5.0e-08 1
UNIPROTKB|O15347 - symbol:HMGB3 "High mobility group prot... 142 5.5e-08 1
UNIPROTKB|Q5T7C4 - symbol:HMGB1 "High mobility group prot... 134 5.7e-08 1
CGD|CAF0007020 - symbol:NHP6A species:5476 "Candida albic... 134 5.7e-08 1
UNIPROTKB|Q9UVL1 - symbol:NHP6 "Non-histone chromosomal p... 134 5.7e-08 1
UNIPROTKB|P12682 - symbol:HMGB1 "High mobility group prot... 145 6.7e-08 1
UNIPROTKB|E9PES6 - symbol:HMGB3 "High mobility group prot... 133 7.3e-08 1
UNIPROTKB|E1BMK2 - symbol:E1BMK2 "Uncharacterized protein... 143 1.3e-07 1
SGD|S000006256 - symbol:NHP6A "High-mobility group (HMG) ... 130 1.5e-07 1
UNIPROTKB|E1BIF8 - symbol:E1BIF8 "Uncharacterized protein... 122 1.6e-07 2
POMBASE|SPAC57A10.09c - symbol:nhp6 "High-mobility group ... 128 2.5e-07 1
UNIPROTKB|J9P699 - symbol:HMGB1 "High mobility group prot... 134 8.0e-07 1
UNIPROTKB|Q5T7C6 - symbol:HMGB1 "High mobility group prot... 123 8.7e-07 1
UNIPROTKB|D4A2L7 - symbol:D4A2L7 "Uncharacterized protein... 123 8.7e-07 1
UNIPROTKB|D6R9A6 - symbol:HMGB2 "High mobility group prot... 123 8.7e-07 1
UNIPROTKB|Q5T7C0 - symbol:HMGB1 "High mobility group prot... 123 8.7e-07 1
RGD|1587112 - symbol:Hmg1l1 "high-mobility group (nonhist... 136 1.0e-06 1
UNIPROTKB|P0C6E5 - symbol:P0C6E5 "Putative high mobility ... 131 1.1e-06 1
RGD|1563668 - symbol:RGD1563668 "similar to High mobility... 135 1.2e-06 1
ZFIN|ZDB-GENE-030131-8480 - symbol:hmgb1b "high-mobility ... 121 1.4e-06 1
UNIPROTKB|J3QR61 - symbol:SMARCE1 "SWI/SNF-related matrix... 121 1.4e-06 1
SGD|S000002157 - symbol:NHP6B "High-mobility group (HMG) ... 121 1.4e-06 1
RGD|1560584 - symbol:RGD1560584 "similar to High mobility... 133 1.7e-06 1
UNIPROTKB|C9JQA7 - symbol:HMG20B "SWI/SNF-related matrix-... 119 2.3e-06 1
RGD|1589528 - symbol:LOC679344 "similar to High mobility ... 132 3.4e-06 1
RGD|1592627 - symbol:LOC685520 "similar to High mobility ... 132 3.4e-06 1
UNIPROTKB|B2RPK0 - symbol:HMGB1P1 "Putative high mobility... 130 5.2e-06 1
TAIR|locus:2136103 - symbol:3xHMG-box1 "3xHigh Mobility G... 138 5.5e-06 1
WARNING: Descriptions of 68 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0010278 [details] [associations]
symbol:Ssrp "Structure specific recognition protein"
species:7227 "Drosophila melanogaster" [GO:0000217 "DNA secondary
structure binding" evidence=ISS] [GO:0003697 "single-stranded DNA
binding" evidence=ISS;NAS] [GO:0005634 "nucleus" evidence=ISS;NAS]
[GO:0003727 "single-stranded RNA binding" evidence=NAS] [GO:0005730
"nucleolus" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001672 "regulation of chromatin assembly or
disassembly" evidence=IMP] [GO:0035101 "FACT complex"
evidence=IDA;TAS] [GO:0043621 "protein self-association"
evidence=IDA] [GO:0031492 "nucleosomal DNA binding" evidence=IDA]
[GO:0051101 "regulation of DNA binding" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:AE013599
GO:GO:0005694 GO:GO:0022008 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0006260 GO:GO:0006281 GO:GO:0006351
GO:GO:0003723 GO:GO:0043621 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0051101 GO:GO:0031492
GeneTree:ENSGT00700000104547 GO:GO:0001672 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:L08825 EMBL:X68408
EMBL:BT004831 PIR:A48217 PIR:S33688 RefSeq:NP_523830.2
UniGene:Dm.3383 PDB:1WXL PDBsum:1WXL ProteinModelPortal:Q05344
SMR:Q05344 IntAct:Q05344 STRING:Q05344 PaxDb:Q05344
EnsemblMetazoa:FBtr0072242 GeneID:37767 KEGG:dme:Dmel_CG4817
CTD:37767 FlyBase:FBgn0010278 InParanoid:Q05344 OrthoDB:EOG40CFZ2
PhylomeDB:Q05344 EvolutionaryTrace:Q05344 GenomeRNAi:37767
NextBio:805310 Bgee:Q05344 GermOnline:CG4817 Uniprot:Q05344
Length = 723
Score = 1882 (667.6 bits), Expect = 1.8e-207, Sum P(2) = 1.8e-207
Identities = 357/626 (57%), Positives = 459/626 (73%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
MT++LE+ ++++E RG LC G+LK+T+QNI+FKN KTGKVEQI+ D+D +N QK VGTW
Sbjct: 1 MTDSLEYNDINAEVRGVLCSGRLKMTEQNIIFKNTKTGKVEQISAEDIDLINSQKFVGTW 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
LR+F K G LHRF GF+++E +K+ F K + ++ EKE+ V+GWNWG +F+G+VLS
Sbjct: 61 GLRVFTKGGVLHRFTGFRDSEHEKLGKFIKAAYSQEMVEKEMCVKGWNWGTARFMGSVLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD + T FE+PL VSQC TGKNEVT+EFH ND+A L+EMRF+IP E A + DPV+
Sbjct: 121 FDKESKTIFEVPLSHVSQCVTGKNEVTLEFHQNDDAPVGLLEMRFHIPAVESA-EEDPVD 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
F +VM++ASVI+A+G++IA+F EIQ LTPRGRYDIKIF++FFQLHGKTFDYKIP+ +V
Sbjct: 180 KFHQNVMSKASVISASGESIAIFREIQILTPRGRYDIKIFSTFFQLHGKTFDYKIPMDSV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFV+SLDPPIKQGQTRYH+L LLF DE + +ELPFSE EL++KYE
Sbjct: 240 LRLFMLPHKDSRQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIELPFSEAELRDKYE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
GKL+KE+SGP YEVM K+MKV++ RKIT PG+F GH+GT+AV CS+KAAAGY+YPLERGF
Sbjct: 300 GKLEKEISGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKAAAGYLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I+IHKPP+HIRFEEI++VNFARSGGSTRSFDFE+ LK+G +H FSSIEKEEY KLFD+I
Sbjct: 360 IYIHKPPLHIRFEEISSVNFARSGGSTRSFDFEVTLKNGTVHIFSSIEKEEYAKLFDYIT 419
Query: 421 EKKLRVKNTGKGEKPNYKE-DFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXXXXXX 479
+KKL V N GK +K YK+ DFG SD+E EPDAYLAR+K
Sbjct: 420 QKKLHVSNMGK-DKSGYKDVDFGDSDNENEPDAYLARLKAEAREKEEDDDDGDSDEESTD 478
Query: 480 --FNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTXXXXXXXXXXTITISEKPRXXXXXX 537
F P++ ESDVAEEYDSN +DSD+DSDAS G +K +
Sbjct: 479 EDFKPNENESDVAEEYDSN-VESDSDDDSDASGGGGDSDGAKKKKEKKSEKKEKKEKKHK 537
Query: 538 XXXXXXXXXXXXXXXXX-XXPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVS 596
+A+M+W ND RE IK++NPGI TEIAKKGGE+WK +
Sbjct: 538 EKERTKKPSKKKKDSGKPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL- 596
Query: 597 SKEKAEYDEKVNKAKEDYNEALKAYK 622
K+K+++++ K K+ Y++ ++ YK
Sbjct: 597 -KDKSKWEDAAAKDKQRYHDEMRNYK 621
Score = 147 (56.8 bits), Expect = 1.8e-207, Sum P(2) = 1.8e-207
Identities = 28/64 (43%), Positives = 42/64 (65%)
Query: 559 SAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTV---------SSKEKAEYDEKVNK 609
+A+M+W ND RE IK++NPGI TEIAKKGGE+WK + ++K+K Y +++
Sbjct: 560 TAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELKDKSKWEDAAAKDKQRYHDEMRN 619
Query: 610 AKED 613
K +
Sbjct: 620 YKPE 623
>ZFIN|ZDB-GENE-031118-9 [details] [associations]
symbol:ssrp1a "structure specific recognition protein
1a" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 ZFIN:ZDB-GENE-031118-9 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX510356
IPI:IPI00487997 Ensembl:ENSDART00000137795 ArrayExpress:F1QEB4
Bgee:F1QEB4 Uniprot:F1QEB4
Length = 705
Score = 1696 (602.1 bits), Expect = 1.4e-174, P = 1.4e-174
Identities = 315/624 (50%), Positives = 427/624 (68%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M + LEF ++ E +G+ G+L+ + Q +V+K+ KTGKV+ I PDL W+++
Sbjct: 1 MGDTLEFNDIHQEVKGSWNDGRLRFSKQTVVYKSHKTGKVDSIPAPDLSEAQWRRVCLGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L++ G ++++ GFKET+ +KI +FFK N+K+++ EK++ V+GWNWG KF G++LS
Sbjct: 61 GLKLATSTGHIYKYDGFKETDYEKISAFFKANYKVELEEKDMCVKGWNWGTAKFAGSLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FDV+++ FEIPL VSQC TGKNEVTVEFH ND+A SL+E+RFY+P N +DPVE
Sbjct: 121 FDVSDSPVFEIPLSSVSQCATGKNEVTVEFHQNDDAEVSLMEVRFYVPPNTGDDGSDPVE 180
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +++++A VI ATGDA+ +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 181 AFAQNILSKADVIQATGDAVCIFKELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 240
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++DE + L SE E++++YE
Sbjct: 241 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLALNMSEDEVEKRYE 300
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
GKL K +SGP YE+++++MK +VNRKITVPG+F+GH+G+ +TC+YKA++G +YPLERGF
Sbjct: 301 GKLSKNMSGPLYEIVSRVMKALVNRKITVPGNFQGHSGSQCITCAYKASSGLLYPLERGF 360
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+H+RFEEI+ VNFAR +TRSFDFEIE K TFS+IE+EEYGKLFDF+
Sbjct: 361 IYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQNNQFTFSNIEREEYGKLFDFVN 420
Query: 421 EKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXXXXX-X 479
KKL +KN G E ED+ SD+++ DAYL R+K
Sbjct: 421 AKKLTIKNRGFKEGMKGAEDYSDSDEDQH-DAYLERMKEEGKIREEGDGSDDSEGDSDES 479
Query: 480 FNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTXXXXXXXXXXTITISEKPRXXXXXXXX 539
FNP + + DV EEYDSN + +DS+ D SE + +KP+
Sbjct: 480 FNPGEEDDDVPEEYDSNASVSDSEGDDGDSEDEGKKKK--------VEKKPKKVVKEKKE 531
Query: 540 XXXXXXXXXXXXXXXXXPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKE 599
PMSAYM+W N RE+IK +NPGIS TEI+KK GE+WK + +
Sbjct: 532 RKPRKEKKVKDAAAPKRPMSAYMLWLNGNRERIKSENPGISITEISKKAGEMWKQLGKDK 591
Query: 600 KAEYDEKVNKAKEDYNEALKAYKE 623
K E+D+K +AK Y +A+K YKE
Sbjct: 592 KEEWDKKAEEAKRQYEKAMKEYKE 615
>UNIPROTKB|Q08945 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005694 GO:GO:0005654
GO:GO:0016032 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006368 Reactome:REACT_1788 GO:GO:0050434 Reactome:REACT_1892
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 OMA:PVEVKKG CTD:6749
HOVERGEN:HBG002932 OrthoDB:EOG41VK2K EMBL:M86737 EMBL:BC005116
EMBL:BC091486 IPI:IPI00005154 PIR:A41976 RefSeq:NP_003137.1
UniGene:Hs.523680 ProteinModelPortal:Q08945 SMR:Q08945 DIP:DIP-169N
IntAct:Q08945 MINT:MINT-5004485 STRING:Q08945 PhosphoSite:Q08945
DMDM:730840 PaxDb:Q08945 PeptideAtlas:Q08945 PRIDE:Q08945
DNASU:6749 Ensembl:ENST00000278412 GeneID:6749 KEGG:hsa:6749
UCSC:uc001njt.3 GeneCards:GC11M057093 HGNC:HGNC:11327 HPA:HPA002697
MIM:604328 neXtProt:NX_Q08945 PharmGKB:PA36151 InParanoid:Q08945
PhylomeDB:Q08945 ChiTaRS:SSRP1 GenomeRNAi:6749 NextBio:26328
PMAP-CutDB:Q08945 ArrayExpress:Q08945 Bgee:Q08945 CleanEx:HS_SSRP1
Genevestigator:Q08945 GermOnline:ENSG00000149136 Uniprot:Q08945
Length = 709
Score = 1502 (533.8 bits), Expect = 2.8e-174, Sum P(2) = 2.8e-174
Identities = 276/513 (53%), Positives = 377/513 (73%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M E LEF +V E +G++ G+L+++ Q I+FKN KTGKV+ I +L W+++
Sbjct: 1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L++ KNG ++++ GF+E+E +K+ FFKT++++++ EK+L V+GWNWG KF G +LS
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD+ + FEIPL +VSQCTTGKNEVT+EFH ND+A SL+E+RFY+P + G DPVE
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDG-VDPVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +V+++A VI ATGDAI +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 180 AFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++DE + L +E+E+++++E
Sbjct: 240 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
G+L K +SG YE+++++MK +VNRKITVPG+F+GH+G +TCSYKA++G +YPLERGF
Sbjct: 300 GRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+HIRF+EI+ VNFAR +TRSFDFEIE K G +TFSSIE+EEYGKLFDF+
Sbjct: 360 IYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVN 419
Query: 421 EKKLRVKNTG--KGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXX--- 475
KKL +KN G +G P+Y E + SD+++ DAYL R+K
Sbjct: 420 AKKLNIKNRGLKEGMNPSYDE-YADSDEDQH-DAYLERMKEEGKIREENANDSSDDSGEE 477
Query: 476 XXXXFNPDQAESDVAEEYDSNPTPTDSDEDSDA 508
FNP + E DVAEE+DSN + + S + D+
Sbjct: 478 TDESFNPGEEEEDVAEEFDSNASASSSSNEGDS 510
Score = 213 (80.0 bits), Expect = 2.8e-174, Sum P(2) = 2.8e-174
Identities = 36/66 (54%), Positives = 50/66 (75%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PMSAYM+W N REKIK D+PGIS T+++KK GE+WK +S ++K E+D K A+ DY +
Sbjct: 550 PMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEK 609
Query: 617 ALKAYK 622
A+K Y+
Sbjct: 610 AMKEYE 615
>UNIPROTKB|Q9W602 [details] [associations]
symbol:ssrp1 "FACT complex subunit SSRP1" species:8355
"Xenopus laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512
KO:K09272 InterPro:IPR024954 CTD:6749 HOVERGEN:HBG002932
EMBL:AB004793 EMBL:BC082613 RefSeq:NP_001084164.1 UniGene:Xl.336
ProteinModelPortal:Q9W602 PRIDE:Q9W602 GeneID:399344
KEGG:xla:399344 Xenbase:XB-GENE-994299 Uniprot:Q9W602
Length = 693
Score = 1670 (592.9 bits), Expect = 4.6e-174, Sum P(2) = 4.6e-174
Identities = 312/623 (50%), Positives = 431/623 (69%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M + LEF ++ E +G++ G+L+++ +++KN KTGKVE I+ D+ V W+++
Sbjct: 1 MADTLEFNDIYQEVKGSMNDGRLRLSRAGLMYKNNKTGKVENISAADIAEVVWRRVALGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
+++ G ++++ GF+ETE DK+ +FK++F +++ EK+L V+GWNWG +F G +LS
Sbjct: 61 GIKLLTNGGHVYKYDGFRETEYDKLFDYFKSHFSVELVEKDLCVKGWNWGSVRFGGQLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD+ + AFE+PL +VSQCTTGKNEVT+EFH ND++ SL+E+RFY+P + G D VE
Sbjct: 121 FDIGDQPAFELPLSNVSQCTTGKNEVTLEFHQNDDSEVSLMEIRFYVPPTQDDGG-DSVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +V+++A VI ATGDA+ +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 180 AFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++DE + L SE+E++ ++E
Sbjct: 240 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDMTLTLNMSEEEVERRFE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
GKL K +SG YE+++++MK +VNRKITVPG+F GH+G+ +TCSYKA++G +YPLERGF
Sbjct: 300 GKLKKSMSGCLYEMVSRVMKALVNRKITVPGNFLGHSGSQCITCSYKASSGLLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+HIRF+EI VNFAR +TRSFDFEIE K G +TFSSIE+EEYGKLFDF+
Sbjct: 360 IYVHKPPVHIRFDEITCVNFARGTTTTRSFDFEIETKQGSQYTFSSIEREEYGKLFDFVN 419
Query: 421 EKKLRVKNTG--KGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXXXXX 478
KKL +KN G +G KP Y +D+ SD+++ DAYL R+K
Sbjct: 420 AKKLSIKNRGLKEGMKPAY-DDYADSDEDQH-DAYLERMKEEGKIRENADSDESGDETDE 477
Query: 479 XFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTXXXXXXXXXXTITISEKPRXXXXXXX 538
FNP + E +VAEE+DSNP+ + S DSD + T + +KPR
Sbjct: 478 SFNPGEEEEEVAEEFDSNPSASSSSADSD--DDTDKKKDAKRAKIVK-QKKPRKKPEAKK 534
Query: 539 XXXXXXXXXXXXXXXXXXPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSK 598
PMSAYM+W N REKIK +NPGIS T+++KK GE+WK +S
Sbjct: 535 TKDPGAPKR---------PMSAYMLWLNASREKIKSENPGISITDLSKKAGEIWKNMSRD 585
Query: 599 EKAEYDEKVNKAKEDYNEALKAY 621
+K E+D + +AK DY +A+K Y
Sbjct: 586 KKEEWDRRAEEAKRDYEKAMKEY 608
Score = 43 (20.2 bits), Expect = 4.6e-174, Sum P(2) = 4.6e-174
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 570 EKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEK 606
EK K+ + TE +KK KT K+KAE EK
Sbjct: 602 EKAMKEYNTSAPTEASKKEK---KTKGEKKKAETSEK 635
>MGI|MGI:107912 [details] [associations]
symbol:Ssrp1 "structure specific recognition protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 MGI:MGI:107912 Pfam:PF00505
Pfam:PF03531 GO:GO:0005737 GO:GO:0005694 GO:GO:0005730
GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
eggNOG:COG5165 KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790
OMA:PVEVKKG CTD:6749 HOVERGEN:HBG002932 OrthoDB:EOG41VK2K
EMBL:S50213 EMBL:AK146446 EMBL:AK146585 EMBL:AK146607 EMBL:AK151584
EMBL:AK158552 EMBL:BC042502 EMBL:BC096682 IPI:IPI00407571
IPI:IPI00652593 PIR:A41265 RefSeq:NP_001129553.1 RefSeq:NP_892035.2
UniGene:Mm.219793 ProteinModelPortal:Q08943 SMR:Q08943
IntAct:Q08943 STRING:Q08943 PhosphoSite:Q08943 PaxDb:Q08943
PRIDE:Q08943 Ensembl:ENSMUST00000077798 Ensembl:ENSMUST00000168266
GeneID:20833 KEGG:mmu:20833 NextBio:299579 Bgee:Q08943
CleanEx:MM_SSRP1 Genevestigator:Q08943
GermOnline:ENSMUSG00000027067 Uniprot:Q08943
Length = 708
Score = 1503 (534.1 bits), Expect = 5.9e-174, Sum P(2) = 5.9e-174
Identities = 275/513 (53%), Positives = 377/513 (73%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M E LEF ++ E +G++ G+L+++ Q I+FKN KTGKV+ I +L W+++
Sbjct: 1 MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L++ KNG ++++ GF+E+E +K+ FFKT++++++ EK+L V+GWNWG KF G +LS
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD+ + FEIPL +VSQCTTGKNEVT+EFH ND+A SL+E+RFY+P + G DPVE
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDG-VDPVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +V+++A VI ATGDAI +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 180 AFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++DE + L +E+E+++++E
Sbjct: 240 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
G+L K +SG YE+++++MK +VNRKITVPG+F+GH+G +TCSYKA++G +YPLERGF
Sbjct: 300 GRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+HIRF+EI+ VNFAR +TRSFDFEIE K G +TFSSIE+EEYGKLFDF+
Sbjct: 360 IYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVN 419
Query: 421 EKKLRVKNTG--KGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXX--- 475
KKL +KN G +G P Y +D+ SD+++ DAYL R+K
Sbjct: 420 AKKLNIKNRGLKEGINPGY-DDYADSDEDQH-DAYLERMKEEGKIREENANDSSDDSGEE 477
Query: 476 XXXXFNPDQAESDVAEEYDSNPTPTDSDEDSDA 508
FNP + E DVAEE+DSN + + S + D+
Sbjct: 478 TDESFNPGEEEEDVAEEFDSNASASSSSNEGDS 510
Score = 209 (78.6 bits), Expect = 5.9e-174, Sum P(2) = 5.9e-174
Identities = 35/66 (53%), Positives = 50/66 (75%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PMSAYM+W N REKIK D+PGIS T+++KK GE+WK +S ++K E+D K A+ +Y +
Sbjct: 550 PMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEK 609
Query: 617 ALKAYK 622
A+K Y+
Sbjct: 610 AMKEYE 615
>RGD|621143 [details] [associations]
symbol:Ssrp1 "structure specific recognition protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;NAS] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505
Pfam:PF03531 RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
Length = 709
Score = 1503 (534.1 bits), Expect = 5.9e-174, Sum P(2) = 5.9e-174
Identities = 275/513 (53%), Positives = 377/513 (73%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M E LEF ++ E +G++ G+L+++ Q I+FKN KTGKV+ I +L W+++
Sbjct: 1 MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L++ KNG ++++ GF+E+E +K+ FFKT++++++ EK+L V+GWNWG KF G +LS
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD+ + FEIPL +VSQCTTGKNEVT+EFH ND+A SL+E+RFY+P + G DPVE
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDG-VDPVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +V+++A VI ATGDAI +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 180 AFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++DE + L +E+E+++++E
Sbjct: 240 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
G+L K +SG YE+++++MK +VNRKITVPG+F+GH+G +TCSYKA++G +YPLERGF
Sbjct: 300 GRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+HIRF+EI+ VNFAR +TRSFDFEIE K G +TFSSIE+EEYGKLFDF+
Sbjct: 360 IYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVN 419
Query: 421 EKKLRVKNTG--KGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXX--- 475
KKL +KN G +G P Y +D+ SD+++ DAYL R+K
Sbjct: 420 AKKLNIKNRGLKEGINPGY-DDYADSDEDQH-DAYLERMKEEGKIREENANDSSDDSGEE 477
Query: 476 XXXXFNPDQAESDVAEEYDSNPTPTDSDEDSDA 508
FNP + E DVAEE+DSN + + S + D+
Sbjct: 478 TDESFNPGEEEEDVAEEFDSNASASSSSNEGDS 510
Score = 209 (78.6 bits), Expect = 5.9e-174, Sum P(2) = 5.9e-174
Identities = 35/66 (53%), Positives = 50/66 (75%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PMSAYM+W N REKIK D+PGIS T+++KK GE+WK +S ++K E+D K A+ +Y +
Sbjct: 550 PMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEK 609
Query: 617 ALKAYK 622
A+K Y+
Sbjct: 610 AMKEYE 615
>UNIPROTKB|Q04931 [details] [associations]
symbol:Ssrp1 "FACT complex subunit SSRP1" species:10116
"Rattus norvegicus" [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
RGD:621143 GO:GO:0005694 GO:GO:0005730 GO:GO:0006355
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 HOGENOM:HOG000180790 CTD:6749 HOVERGEN:HBG002932
EMBL:BC083588 EMBL:L08814 IPI:IPI00231263 PIR:S35637
RefSeq:NP_112383.1 UniGene:Rn.35908 ProteinModelPortal:Q04931
STRING:Q04931 PhosphoSite:Q04931 PRIDE:Q04931
Ensembl:ENSRNOT00000012022 GeneID:81785 KEGG:rno:81785
UCSC:RGD:621143 NextBio:615643 ArrayExpress:Q04931
Genevestigator:Q04931 GermOnline:ENSRNOG00000008825 Uniprot:Q04931
Length = 709
Score = 1503 (534.1 bits), Expect = 5.9e-174, Sum P(2) = 5.9e-174
Identities = 275/513 (53%), Positives = 377/513 (73%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M E LEF ++ E +G++ G+L+++ Q I+FKN KTGKV+ I +L W+++
Sbjct: 1 MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L++ KNG ++++ GF+E+E +K+ FFKT++++++ EK+L V+GWNWG KF G +LS
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD+ + FEIPL +VSQCTTGKNEVT+EFH ND+A SL+E+RFY+P + G DPVE
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDG-VDPVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +V+++A VI ATGDAI +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 180 AFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++DE + L +E+E+++++E
Sbjct: 240 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
G+L K +SG YE+++++MK +VNRKITVPG+F+GH+G +TCSYKA++G +YPLERGF
Sbjct: 300 GRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+HIRF+EI+ VNFAR +TRSFDFEIE K G +TFSSIE+EEYGKLFDF+
Sbjct: 360 IYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVN 419
Query: 421 EKKLRVKNTG--KGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXX--- 475
KKL +KN G +G P Y +D+ SD+++ DAYL R+K
Sbjct: 420 AKKLNIKNRGLKEGINPGY-DDYADSDEDQH-DAYLERMKEEGKIREENANDSSDDSGEE 477
Query: 476 XXXXFNPDQAESDVAEEYDSNPTPTDSDEDSDA 508
FNP + E DVAEE+DSN + + S + D+
Sbjct: 478 TDESFNPGEEEEDVAEEFDSNASASSSSNEGDS 510
Score = 209 (78.6 bits), Expect = 5.9e-174, Sum P(2) = 5.9e-174
Identities = 35/66 (53%), Positives = 50/66 (75%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PMSAYM+W N REKIK D+PGIS T+++KK GE+WK +S ++K E+D K A+ +Y +
Sbjct: 550 PMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEK 609
Query: 617 ALKAYK 622
A+K Y+
Sbjct: 610 AMKEYE 615
>UNIPROTKB|I3LLA8 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 KO:K09272 InterPro:IPR024954 OMA:PVEVKKG CTD:6749
EMBL:FP312857 RefSeq:XP_003353912.1 Ensembl:ENSSSCT00000023703
GeneID:100624907 KEGG:ssc:100624907 Uniprot:I3LLA8
Length = 709
Score = 1502 (533.8 bits), Expect = 7.5e-174, Sum P(2) = 7.5e-174
Identities = 276/513 (53%), Positives = 377/513 (73%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M E LEF +V E +G++ G+L+++ Q I+FKN KTGKV+ I +L W+++
Sbjct: 1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L++ KNG ++++ GF+E+E +K+ FFKT++++++ EK+L V+GWNWG KF G +LS
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD+ + FEIPL +VSQCTTGKNEVT+EFH ND+A SL+E+RFY+P + G DPVE
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDG-VDPVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +V+++A VI ATGDAI +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 180 AFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++DE + L +E+E+++++E
Sbjct: 240 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
G+L K +SG YE+++++MK +VNRKITVPG+F+GH+G +TCSYKA++G +YPLERGF
Sbjct: 300 GRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+HIRF+EI+ VNFAR +TRSFDFEIE K G +TFSSIE+EEYGKLFDF+
Sbjct: 360 IYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVN 419
Query: 421 EKKLRVKNTG--KGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXX--- 475
KKL +KN G +G P+Y E + SD+++ DAYL R+K
Sbjct: 420 AKKLNIKNRGLKEGMNPSYDE-YADSDEDQH-DAYLERMKEEGKIREENANDSSDDSGEE 477
Query: 476 XXXXFNPDQAESDVAEEYDSNPTPTDSDEDSDA 508
FNP + E DVAEE+DSN + + S + D+
Sbjct: 478 TDESFNPGEEEEDVAEEFDSNASASSSSNEGDS 510
Score = 209 (78.6 bits), Expect = 7.5e-174, Sum P(2) = 7.5e-174
Identities = 35/66 (53%), Positives = 50/66 (75%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PMSAYM+W N REKIK D+PGIS T+++KK GE+WK +S ++K E+D K A+ +Y +
Sbjct: 550 PMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEK 609
Query: 617 ALKAYK 622
A+K Y+
Sbjct: 610 AMKEYE 615
Score = 42 (19.8 bits), Expect = 3.4e-156, Sum P(2) = 3.4e-156
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 487 SDVAEEYDSNPTPTDSDEDSDASE 510
S+ +EE D TP S++ AS+
Sbjct: 685 SEDSEEEDLASTPPSSEDSGSASD 708
>UNIPROTKB|F6QYV9 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0005737 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 InterPro:IPR024954 OMA:PVEVKKG EMBL:DAAA02041723
IPI:IPI00699243 UniGene:Bt.5242 Ensembl:ENSBTAT00000000486
Uniprot:F6QYV9
Length = 709
Score = 1498 (532.4 bits), Expect = 2.5e-173, Sum P(2) = 2.5e-173
Identities = 275/513 (53%), Positives = 377/513 (73%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M E LEF +V E +G++ G+L+++ Q I+FKN KTGKV+ I +L W+++
Sbjct: 1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L++ KNG ++++ GF+E+E +K+ FFKT++++++ EK+L V+GWNWG KF G +LS
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD+ + FEIPL +VSQCTTGKNEVT+EFH ND+A SL+E+RFY+P + G DPVE
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDG-VDPVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +V+++A VI ATGDAI +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 180 AFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++DE + L +E+++++++E
Sbjct: 240 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEKVEKRFE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
G+L K +SG YE+++++MK +VNRKITVPG+F+GH+G +TCSYKA++G +YPLERGF
Sbjct: 300 GRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+HIRF+EI+ VNFAR +TRSFDFEIE K G +TFSSIE+EEYGKLFDF+
Sbjct: 360 IYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVN 419
Query: 421 EKKLRVKNTG--KGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXX--- 475
KKL +KN G +G P+Y E + SD+++ DAYL R+K
Sbjct: 420 AKKLNIKNRGLKEGMNPSYDE-YADSDEDQH-DAYLERMKEEGKIREENANDSSDDSGEE 477
Query: 476 XXXXFNPDQAESDVAEEYDSNPTPTDSDEDSDA 508
FNP + E DVAEE+DSN + + S + D+
Sbjct: 478 TDESFNPGEEEEDVAEEFDSNASASSSSNEGDS 510
Score = 208 (78.3 bits), Expect = 2.5e-173, Sum P(2) = 2.5e-173
Identities = 35/66 (53%), Positives = 50/66 (75%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PMSAYM+W N REKIK D+PGIS T+++KK GE+WK +S ++K E+D K A+ +Y +
Sbjct: 550 PMSAYMLWLNASREKIKSDHPGISVTDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEK 609
Query: 617 ALKAYK 622
A+K Y+
Sbjct: 610 AMKEYE 615
>UNIPROTKB|B6ZLK1 [details] [associations]
symbol:SSRP1 "Structure-specific recognition protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR009071 InterPro:IPR000969 PRINTS:PR00887
Pfam:PF00505 Pfam:PF03531 GO:GO:0005634 GO:GO:0005737
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG IPI:IPI00582237 UniGene:Gga.2985
HOVERGEN:HBG002932 EMBL:AADN02050757 EMBL:AADN02050758
EMBL:AB465209 STRING:B6ZLK1 Ensembl:ENSGALT00000012159
Ensembl:ENSGALT00000038738 Uniprot:B6ZLK1
Length = 706
Score = 1673 (594.0 bits), Expect = 3.8e-172, P = 3.8e-172
Identities = 316/626 (50%), Positives = 429/626 (68%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M + LEF E+ E +G++ G+L+++ Q ++FKN KTGKV+ I +L W+++
Sbjct: 1 MADTLEFNEIYQEVKGSMNDGRLRLSRQGVIFKNSKTGKVDNIQASELAEGVWRRVALGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L++ KNG ++++ GF+E+E DK+ FFK ++++++ EK+L V+GWNWG +F G +LS
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFDKLSDFFKAHYRLELAEKDLCVKGWNWGTVRFGGQLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD+ FEIPL +VSQCTTGKNEVT+EFH ND+A SL+E+RFY+P + G DPVE
Sbjct: 121 FDIGEQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDG-VDPVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +V+++A VI ATGDAI +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 180 AFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++DE + L +E+E+++++E
Sbjct: 240 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
G+L K +SG YE+++++MK +VNRKITVPG+F+GH+G +TCSYKA++G +YPLERGF
Sbjct: 300 GRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+HIRF+EI+ VNFAR +TRSFDFEIE K G +TFSSIE+EEYGKLFDF+
Sbjct: 360 IYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVN 419
Query: 421 EKKLRVKNTG--KGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXX--- 475
KKL +KN G +G K +Y E + SD+++ DAYL R+K
Sbjct: 420 AKKLNIKNRGLKEGMKQSYDE-YADSDEDQH-DAYLERMKEEGKIREENANDSSDGSGEE 477
Query: 476 XXXXFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTXXXXXXXXXXTITISEKPRXXXX 535
FNP + + DVAEE+DSN + + S D D+ G I KPR
Sbjct: 478 TDESFNPGEEDDDVAEEFDSNASASSSSGDGDSDRGEKKPAKKAK---IVKDRKPRKKQV 534
Query: 536 XXXXXXXXXXXXXXXXXXXXXPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTV 595
PMSAYM+W N REKIK D+PGIS T+++KK GELWK +
Sbjct: 535 ESKKGKDPNAPKR--------PMSAYMLWLNANREKIKSDHPGISITDLSKKAGELWKAM 586
Query: 596 SSKEKAEYDEKVNKAKEDYNEALKAY 621
S ++K E+D K AK DY +A+K Y
Sbjct: 587 SKEKKEEWDRKAEDAKRDYEKAMKEY 612
>UNIPROTKB|Q04678 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005694 GO:GO:0005730 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165
KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790 EMBL:AJ719641
EMBL:L08815 EMBL:D14315 IPI:IPI00582237 PIR:S78050
RefSeq:NP_001005796.1 UniGene:Gga.2985 ProteinModelPortal:Q04678
STRING:Q04678 PRIDE:Q04678 GeneID:396509 KEGG:gga:396509 CTD:6749
HOVERGEN:HBG002932 InParanoid:Q04678 OrthoDB:EOG41VK2K
NextBio:20816548 Uniprot:Q04678
Length = 706
Score = 1673 (594.0 bits), Expect = 3.8e-172, P = 3.8e-172
Identities = 316/626 (50%), Positives = 429/626 (68%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M + LEF E+ E +G++ G+L+++ Q ++FKN KTGKV+ I +L W+++
Sbjct: 1 MADTLEFNEIYQEVKGSMNDGRLRLSRQGVIFKNSKTGKVDNIQASELAEGVWRRVALGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L++ KNG ++++ GF+E+E DK+ FFK ++++++ EK+L V+GWNWG +F G +LS
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFDKLSDFFKAHYRLELAEKDLCVKGWNWGTVRFGGQLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD+ FEIPL +VSQCTTGKNEVT+EFH ND+A SL+E+RFY+P + G DPVE
Sbjct: 121 FDIGEQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDG-VDPVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +V+++A VI ATGDAI +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 180 AFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++DE + L +E+E+++++E
Sbjct: 240 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
G+L K +SG YE+++++MK +VNRKITVPG+F+GH+G +TCSYKA++G +YPLERGF
Sbjct: 300 GRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+HIRF+EI+ VNFAR +TRSFDFEIE K G +TFSSIE+EEYGKLFDF+
Sbjct: 360 IYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVN 419
Query: 421 EKKLRVKNTG--KGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXX--- 475
KKL +KN G +G K +Y E + SD+++ DAYL R+K
Sbjct: 420 AKKLNIKNRGLKEGMKQSYDE-YADSDEDQH-DAYLERMKEEGKIREENANDSSDGSGEE 477
Query: 476 XXXXFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTXXXXXXXXXXTITISEKPRXXXX 535
FNP + + DVAEE+DSN + + S D D+ G I KPR
Sbjct: 478 TDESFNPGEEDDDVAEEFDSNASASSSSGDGDSDRGEKKPAKKAK---IVKDRKPRKKQV 534
Query: 536 XXXXXXXXXXXXXXXXXXXXXPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTV 595
PMSAYM+W N REKIK D+PGIS T+++KK GELWK +
Sbjct: 535 ESKKGKDPNAPKR--------PMSAYMLWLNANREKIKSDHPGISITDLSKKAGELWKAM 586
Query: 596 SSKEKAEYDEKVNKAKEDYNEALKAY 621
S ++K E+D K AK DY +A+K Y
Sbjct: 587 SKEKKEEWDRKAEDAKRDYEKAMKEY 612
>ZFIN|ZDB-GENE-041008-209 [details] [associations]
symbol:ssrp1b "structure specific recognition
protein 1b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
ZFIN:ZDB-GENE-041008-209 GO:GO:0005634 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00700000104547
InterPro:IPR013719 Pfam:PF08512 InterPro:IPR024954 EMBL:BX511158
IPI:IPI00502576 PRIDE:F6NLJ7 Ensembl:ENSDART00000131296 Bgee:F6NLJ7
Uniprot:F6NLJ7
Length = 703
Score = 1660 (589.4 bits), Expect = 9.1e-171, P = 9.1e-171
Identities = 310/625 (49%), Positives = 425/625 (68%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M++ LEF E+ E +G+ G+L+ + Q +V+KN KTGKV+ I P+L W+++
Sbjct: 1 MSDTLEFNEIYQEVKGSWNDGRLRFSKQTVVYKNSKTGKVDTIPVPELTQAQWRRVCLGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
++++ G ++++ GFK+ +++KI +FK N+K+++ EK++ V+GWNWG KF G +LS
Sbjct: 61 GIKLWTSTGHIYKYDGFKDADLEKISEYFKDNYKVELTEKDMCVKGWNWGTAKFNGPLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FDVN++ FEIPL VSQCTTGKNEVTVEFH ND+ SL+E+RFY+P +DPVE
Sbjct: 121 FDVNDSPTFEIPLSSVSQCTTGKNEVTVEFHQNDDTEVSLMEVRFYVPPTTGDEGSDPVE 180
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +V+++A VI ATGDA+ +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 181 AFAQNVLSKADVIQATGDAVCIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 240
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF+++ET + L +E E++ ++E
Sbjct: 241 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEETISLTLNMNEDEVERRFE 300
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
GKL+K +SG YE+++++MK +VNRKITVPG+F+GH+G +TCSYKA++G +YPLERGF
Sbjct: 301 GKLNKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF 360
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+H+RFEEIA VNFAR +TRSFDFEIE K G +TFSSIE+EEYGKLFDF+
Sbjct: 361 IYVHKPPVHLRFEEIACVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVN 420
Query: 421 EKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXXXXX-X 479
KKL +KN G E +D S DE + DAYL R+K
Sbjct: 421 AKKLSIKNRGFKEGMKGNDDMYSDSDEDQHDAYLERMKEEGKIREEGNDSDDSEGESDES 480
Query: 480 FNPDQAESDVAEEYDSNPTPTDSD-EDSDASEGTXXXXXXXXXXTITISEKPRXXXXXXX 538
FNP + + D+AEEYDS + ++S E+ D+ E KPR
Sbjct: 481 FNPGEEDEDIAEEYDSKASASESSAEEGDSDEDRKKKSAKKVK--FVKERKPRKKEKKVK 538
Query: 539 XXXXXXXXXXXXXXXXXXPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSK 598
PMSAYM+W N R++IK +NPGIS TEI+KK GE+WK +
Sbjct: 539 DSGAPKR-----------PMSAYMLWLNSSRDRIKSENPGISITEISKKAGEMWKQLGKD 587
Query: 599 EKAEYDEKVNKAKEDYNEALKAYKE 623
+K E+D K +AK++Y+ A++ Y+E
Sbjct: 588 KKEEWDGKAEEAKKEYDRAMREYRE 612
>UNIPROTKB|F1Q2J2 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
InterPro:IPR024954 OMA:PVEVKKG EMBL:AAEX03011448
Ensembl:ENSCAFT00000012707 Uniprot:F1Q2J2
Length = 710
Score = 1470 (522.5 bits), Expect = 2.3e-170, Sum P(2) = 2.3e-170
Identities = 272/512 (53%), Positives = 373/512 (72%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M E LEF +V E +G++ G+L+++ Q I+FKN KTGKV+ I +L W+++
Sbjct: 1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGH 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L++ KNG ++++ GF+E+E +K+ FFKT++++++ EK+L V+GWNWG KF G +LS
Sbjct: 61 GLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD+ + FEIPL +VSQCTTGKNEVT+EFH ND+A SL+E+RFY+P + G DPVE
Sbjct: 121 FDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSLMEVRFYVPPTQEDG-VDPVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
AF +V+++A VI ATGDAI +F E+QCLTPRGRYDI+I+ +F LHGKTFDYKIP +TV
Sbjct: 180 AFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++DE + L +E+E+++++E
Sbjct: 240 LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDISLTLNMNEEEVEKRFE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
G+L K +SG YE+++++MK +VNRKITVPG+F+GH+G +TCSYKA++G +YPLERGF
Sbjct: 300 GRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I++HKPP+HIRF+EI+ VNFAR +TRSFDFEIE K G +TFSSIE+EEYGKLFDF+
Sbjct: 360 IYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGTQYTFSSIEREEYGKLFDFVN 419
Query: 421 EKKLRVKNTG--KGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXXXXX 478
KKL +KN G +G P+Y E + SD+++ DAYL R+K
Sbjct: 420 AKKLNIKNRGLKEGMNPSYDE-YADSDEDQH-DAYLERMKEEGKIREENANDSSDDSGEE 477
Query: 479 XFNPD-QAES-DVAEEYDSNPTPTDSDEDSDA 508
Q D+AEE+DSN + + S + D+
Sbjct: 478 TGRSSIQGRGGDLAEEFDSNASASSSSNEGDS 509
Score = 208 (78.3 bits), Expect = 2.3e-170, Sum P(2) = 2.3e-170
Identities = 35/66 (53%), Positives = 50/66 (75%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PMSAYM+W N REKIK D+PGIS T+++KK GE+WK +S ++K E+D K A+ +Y +
Sbjct: 549 PMSAYMLWLNASREKIKADHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEK 608
Query: 617 ALKAYK 622
A+K Y+
Sbjct: 609 AMKEYE 614
>UNIPROTKB|J9NYX4 [details] [associations]
symbol:SSRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 InterPro:IPR024954 EMBL:AAEX03011448
Ensembl:ENSCAFT00000049552 Uniprot:J9NYX4
Length = 551
Score = 1015 (362.4 bits), Expect = 2.8e-122, Sum P(2) = 2.8e-122
Identities = 185/300 (61%), Positives = 242/300 (80%)
Query: 161 IEMRFYIPTNEIAGDTDPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIF 220
+E+RFY+P + G DPVEAF +V+++A VI ATGDAI +F E+QCLTPRGRYDI+I+
Sbjct: 1 MEVRFYVPPTQEDG-VDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRIY 59
Query: 221 NSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQ 280
+F LHGKTFDYKIP +TVLR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF++
Sbjct: 60 PTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSK 119
Query: 281 DETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTS 340
DE + L +E+E+++++EG+L K +SG YE+++++MK +VNRKITVPG+F+GH+G
Sbjct: 120 DEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQ 179
Query: 341 AVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGV 400
+TCSYKA++G +YPLERGFI++HKPP+HIRF+EI+ VNFAR +TRSFDFEIE K G
Sbjct: 180 CITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFDFEIETKQGT 239
Query: 401 LHTFSSIEKEEYGKLFDFIREKKLRVKNTG--KGEKPNYKEDFGSSDDEKEPDAYLARVK 458
+TFSSIE+EEYGKLFDF+ KKL +KN G +G P+Y E + SD+++ DAYL R+K
Sbjct: 240 QYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGMNPSYDE-YADSDEDQH-DAYLERMK 297
Score = 208 (78.3 bits), Expect = 2.8e-122, Sum P(2) = 2.8e-122
Identities = 35/66 (53%), Positives = 50/66 (75%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PMSAYM+W N REKIK D+PGIS T+++KK GE+WK +S ++K E+D K A+ +Y +
Sbjct: 392 PMSAYMLWLNASREKIKADHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEK 451
Query: 617 ALKAYK 622
A+K Y+
Sbjct: 452 AMKEYE 457
>WB|WBGene00001974 [details] [associations]
symbol:hmg-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0040011 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0040035 GO:GO:0007276
EMBL:FO081094 GeneTree:ENSGT00700000104547 InterPro:IPR013719
Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 OMA:PVEVKKG PIR:T16908 RefSeq:NP_498633.1
ProteinModelPortal:P41848 SMR:P41848 DIP:DIP-26608N
MINT:MINT-1083096 STRING:P41848 PaxDb:P41848
EnsemblMetazoa:T20B12.8 GeneID:176052 KEGG:cel:CELE_T20B12.8
UCSC:T20B12.8 CTD:176052 WormBase:T20B12.8 InParanoid:P41848
NextBio:890908 Uniprot:P41848
Length = 697
Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
Identities = 243/632 (38%), Positives = 361/632 (57%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M E L+F V E G L G LK+T++++ FK K GK + G D+D + WQKL
Sbjct: 1 MAE-LQFPGVYVEDVGHLAFGTLKLTEKSLNFKGDKGGKSVNVTGSDIDKLKWQKLGNKP 59
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
LR+ L +G HRF GFK+T+++KI SF +N+ + + L ++GWN+G + G +
Sbjct: 60 GLRVGLNDGGAHRFGGFKDTDLEKIQSFTSSNWSQSIDQSNLFIKGWNYGQAEVKGKTVE 119
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTN-EIAGDTDPV 179
F + FEIP +VS KNE +EFH ND++ L+EMRF++P + E D D V
Sbjct: 120 FSWEDKPIFEIPCTNVSNVIANKNEAVLEFHQNDDSKVQLMEMRFHMPIDLENEEDADKV 179
Query: 180 EAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPIST 239
E FK +V+ A + T I + +I C TPRGRYDIK++ + LHGKT+DYKIPI +
Sbjct: 180 EEFKKAVLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPIKS 239
Query: 240 VLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKY 299
+ R+F +PHKDGR +FV+SL+PPI+QGQTRY +L F +DE ++EL ++++L E
Sbjct: 240 INRLFLVPHKDGRHVYFVLSLNPPIRQGQTRYSYLIFEFGKDEEQDLELALTDEQL-ESS 298
Query: 300 EGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERG 359
G L ++++GP YE ++ + K I N KITVPG F G +GT A+ C+++ G +YP+E+G
Sbjct: 299 NGNLRRDMTGPIYETISILFKSICNLKITVPGRFLGSSGTPAIQCTHRQNPGLLYPMEKG 358
Query: 360 FIFIHKPPIHIRFEEIATVNFARS--GGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFD 417
F+FIHKP ++IRFEEI++ +FARS G TR+FDFEI+LK G TF+++EKEE KLFD
Sbjct: 359 FLFIHKPAMYIRFEEISSCHFARSDSGTVTRTFDFEIDLKYGGPLTFNAMEKEENNKLFD 418
Query: 418 FIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXXXX 477
++ +K ++++N+ + E N D SSDDE +P +
Sbjct: 419 YLNKKNIKIRNSQRVE--NTVAD--SSDDEIDPYKAAVTAEGRQRDDSDDDSTDEDYDLD 474
Query: 478 XXFNPDQAESDVAEEYDSNPTPT-DSDEDSDASEGTXXXXXXXXXXTITISEK--PRXXX 534
+ + + +E S P DS + D+S GT + K P+
Sbjct: 475 KDIKKKKEDKESSEGTGSEPDDEYDSGSEQDSS-GTGESEPDSEQDVPSKRRKGEPKEKR 533
Query: 535 XXXXXXXXXXXXXXXXXXXXXXPM---SAYMMWFNDMREKIKKDNPGISFTEIAKKGGEL 591
P SAYM WF R ++K+D G S ++AKKGG
Sbjct: 534 EKKEKREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAK 591
Query: 592 WKTVSSKEKAEYDEKVNKAKEDYNEALKAYKE 623
WKT+SS +K +++EK + K Y + +K Y++
Sbjct: 592 WKTMSSDDKKKWEEKAEEDKSRYEKEMKEYRK 623
>WB|WBGene00001973 [details] [associations]
symbol:hmg-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] InterPro:IPR009071
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0005694 GO:GO:0002119 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0010171 GO:GO:0040011 GO:GO:0040018 GO:GO:0048477
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000910 GO:GO:0007413
GeneTree:ENSGT00700000104547 InterPro:IPR013719 Pfam:PF08512
EMBL:FO080198 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 PIR:T34025 RefSeq:NP_491688.1
ProteinModelPortal:O01683 SMR:O01683 IntAct:O01683 STRING:O01683
PaxDb:O01683 PRIDE:O01683 EnsemblMetazoa:C32F10.5 GeneID:172250
KEGG:cel:CELE_C32F10.5 UCSC:C32F10.5 CTD:172250 WormBase:C32F10.5
InParanoid:O01683 OMA:KRATTAY NextBio:874675 Uniprot:O01683
Length = 689
Score = 1017 (363.1 bits), Expect = 2.9e-114, Sum P(2) = 2.9e-114
Identities = 212/519 (40%), Positives = 314/519 (60%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
MTE L+F+ V E G L G L +T+ +I F K GK I G D+D + WQKL
Sbjct: 1 MTE-LKFKGVYVEDIGHLTCGTLTLTENSINFIGDKGGKSVYITGTDVDKLKWQKLGNKP 59
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
LR+ L +G HRF GF + ++ KI SF +N+ + + L + GWN+G G +
Sbjct: 60 GLRVGLSDGGAHRFGGFLDDDLQKIQSFTSSNWSKSINQSNLFINGWNYGQADVKGKNIE 119
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTN-EIAGDTDPV 179
F N FEIP +VS KNE +EFH N+++ L+EMRF++P + E DTD V
Sbjct: 120 FSWENEPIFEIPCTNVSNVIANKNEAILEFHQNEQSKVQLMEMRFHMPVDLENEEDTDKV 179
Query: 180 EAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPIST 239
E FK +V+ A + T I + +I C TPRGRYDIK++ + LHGKT+DYKIP+ T
Sbjct: 180 EEFKKAVLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPVKT 239
Query: 240 VLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKY 299
+ R+F +PHKDGRQ +FV+SL+PPI+QGQT Y +L F +DE ++EL ++++L + +
Sbjct: 240 INRLFLVPHKDGRQVYFVLSLNPPIRQGQTHYSYLIFEFGKDEEEDLELSLTDEQL-DYF 298
Query: 300 EGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERG 359
G L +E++GP YE ++ + K I N K+TVPG F G +GT A+ C+++ G +YP+E+G
Sbjct: 299 NGNLQREMTGPIYETISILFKSICNLKVTVPGRFLGSSGTPAIQCTHRQNLGLLYPMEKG 358
Query: 360 FIFIHKPPIHIRFEEIATVNFARS--GGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFD 417
F+FI KP ++IRFEEI++ +FARS G TR+FDFEI+LK+G TFS+++KEE KLFD
Sbjct: 359 FLFIQKPVMYIRFEEISSCHFARSDSGTVTRTFDFEIDLKTGSSLTFSAMDKEENNKLFD 418
Query: 418 FIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXXXX 477
++ +K+++++N+ + + N +GSSD++ + D Y + VK
Sbjct: 419 YLNKKEIKIRNSHRID--NKSAGYGSSDED-DIDPYKSTVKAEGREQDDDSDDESTDEDY 475
Query: 478 XX---FNPDQAESDVAEEYDSNPTPT-DSDEDSDASEGT 512
+ + D +E S P DS + DAS GT
Sbjct: 476 DLDKDMKKQKNDKDSSEGSGSEPDDEYDSGSEKDAS-GT 513
Score = 130 (50.8 bits), Expect = 2.9e-114, Sum P(2) = 2.9e-114
Identities = 24/65 (36%), Positives = 42/65 (64%)
Query: 559 SAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEAL 618
+AY++WFN R +K+D G + ++AKK G WK++S+ +K E+++K + K Y +
Sbjct: 566 TAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEM 623
Query: 619 KAYKE 623
K YK+
Sbjct: 624 KEYKK 628
Score = 41 (19.5 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 480 FNPDQAESDVAEEYDSNPTPTDSDEDSDASEGT 512
F + SD + D P DE ASE +
Sbjct: 653 FKSKEHISDTDDSDDDEPLKAKKDESDAASESS 685
>TAIR|locus:2098413 [details] [associations]
symbol:HMG "high mobility group" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0035101 "FACT complex" evidence=IDA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=IMP]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010050 "vegetative phase
change" evidence=RCA] [GO:0010051 "xylem and phloem pattern
formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0048439 "flower morphogenesis"
evidence=RCA] [GO:0048519 "negative regulation of biological
process" evidence=RCA] InterPro:IPR009071 InterPro:IPR000969
PRINTS:PR00887 Pfam:PF00505 Pfam:PF03531 EMBL:CP002686
GenomeReviews:BA000014_GR Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0003700
GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0010228 GO:GO:0005719 GO:GO:0035101
InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165 KO:K09272
InterPro:IPR024954 OMA:PVEVKKG EMBL:D13491 EMBL:AP002057
EMBL:BT002507 EMBL:AK318679 EMBL:AK221855 IPI:IPI00547320
IPI:IPI00931095 PIR:S35511 RefSeq:NP_189515.1 UniGene:At.21931
UniGene:At.48716 ProteinModelPortal:Q05153 SMR:Q05153 STRING:Q05153
PaxDb:Q05153 PRIDE:Q05153 EnsemblPlants:AT3G28730.1 GeneID:822505
KEGG:ath:AT3G28730 TAIR:At3g28730 HOGENOM:HOG000241245
InParanoid:Q05153 PhylomeDB:Q05153 ProtClustDB:CLSN2684068
Genevestigator:Q05153 GermOnline:AT3G28730 Uniprot:Q05153
Length = 646
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 218/647 (33%), Positives = 326/647 (50%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
M + F +S RG PG LKI I +K + GK +++ D+ V+W K+ +
Sbjct: 1 MADGHSFNNISLSGRGGKNPGLLKINSGGIQWKKQGGGKAVEVDRSDIVSVSWTKVTKSN 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
L + K+G ++F GF++ ++ + SFF++++ EK+LSV G NWG GN L+
Sbjct: 61 QLGVKTKDGLYYKFVGFRDQDVPSLSSFFQSSYGKTPDEKQLSVSGRNWGEVDLHGNTLT 120
Query: 121 FDVNNTTAFEIPLRDVSQCTT-GKNEVTVEFHPNDEAA----ESLIEMRFYIPTN--EIA 173
F V + AFE+ L DVSQ GKN+VT+EFH +D A +SL+E+ F+IP + +
Sbjct: 121 FLVGSKQAFEVSLADVSQTQLQGKNDVTLEFHVDDTAGANEKDSLMEISFHIPNSNTQFV 180
Query: 174 GDTD--PVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTF 231
GD + P + F D+++ A V DA+ F I LTPRGRY++++ SF +L G+
Sbjct: 181 GDENRPPSQVFNDTIVAMADVSPGVEDAVVTFESIAILTPRGRYNVELHLSFLRLQGQAN 240
Query: 232 DYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFS 291
D+KI S+V+R+F LP + F VISLDPPI++GQT Y + + F D E EL S
Sbjct: 241 DFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTMYPHIVMQFETDTVVESELSIS 300
Query: 292 EQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAG 351
++ + K++ KL++ G +EV +++ + KIT PG FR AV S KA G
Sbjct: 301 DELMNTKFKDKLERSYKGLIHEVFTTVLRWLSGAKITKPGKFRSSQDGFAVKSSLKAEDG 360
Query: 352 YIYPLERGFIFIHKPPIHIRFEEIATVNFAR--SGGSTRS-FDFEIELKSGVLHTFSSIE 408
+YPLE+GF F+ KPP I +EI V F R +GG+ FD I LK+ H F +I+
Sbjct: 361 VLYPLEKGFFFLPKPPTLILHDEIDYVEFERHAAGGANMHYFDLLIRLKTDHEHLFRNIQ 420
Query: 409 KEEYGKLFDFIREKKLRVKNTG-KGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXX 467
+ EY L+ FI K L++ N G G G +DD+ D +L R++
Sbjct: 421 RNEYHNLYTFISSKGLKIMNLGGAGTADGVAAVLGDNDDDDAVDPHLTRIRNQAADES-- 478
Query: 468 XXXXXXXXXXXXFNPDQAESD-VAEEYDSNPTPTDSD--EDSDASEGTXXXXXXXXXXTI 524
D+ + D V E D +PTD +DSDASEG
Sbjct: 479 ---------------DEEDEDFVMGEDDDGGSPTDDSGGDDSDASEGGVGEIKEKSIKKE 523
Query: 525 TISEK------PRXXXXXXXXXXXXXXXXXXXXXXXXXPMSAY--MMWFNDM-REKIKKD 575
E P P A M+F+ M R+ IKK+
Sbjct: 524 PKKEASSSKGLPPKRKTVAADEGSSKRKKPKKKKDPNAPKRAMSGFMFFSQMERDNIKKE 583
Query: 576 NPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622
+PGI+F E+ K G+ W+ +S+ +K Y+ K K+ Y + + YK
Sbjct: 584 HPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQVDKQRYKDEISDYK 630
>POMBASE|SPBC609.05 [details] [associations]
symbol:pob3 "FACT complex subunit Pob3" species:4896
"Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISM] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=ISO] [GO:0030466 "chromatin
silencing at silent mating-type cassette" evidence=IMP] [GO:0030702
"chromatin silencing at centromere" evidence=IMP] [GO:0034613
"cellular protein localization" evidence=IMP] [GO:0035101 "FACT
complex" evidence=IDA] [GO:0043486 "histone exchange" evidence=IC]
[GO:0043596 "nuclear replication fork" evidence=ISS] [GO:0045899
"positive regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=ISO] [GO:0071276 "cellular
response to cadmium ion" evidence=IMP] [GO:0071585 "detoxification
of cadmium ion" evidence=IMP] InterPro:IPR000969 PRINTS:PR00887
PomBase:SPBC609.05 Pfam:PF03531 GO:GO:0005829 GO:GO:0034613
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260
EMBL:CU329671 GO:GO:0071276 GO:GO:0071585 GO:GO:0006281
GO:GO:0006351 GenomeReviews:CU329671_GR GO:GO:0030466 GO:GO:0000790
GO:GO:0030702 GO:GO:0000070 GO:GO:0043596 GO:GO:0043486
GO:GO:0045899 GO:GO:0006334 GO:GO:0035101 InterPro:IPR013719
Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
HOGENOM:HOG000180790 OrthoDB:EOG437VP9 PIR:T40576
RefSeq:NP_596315.1 ProteinModelPortal:O94529 STRING:O94529
EnsemblFungi:SPBC609.05.1 GeneID:2541088 KEGG:spo:SPBC609.05
OMA:FQKDEET NextBio:20802201 Uniprot:O94529
Length = 512
Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
Identities = 179/511 (35%), Positives = 272/511 (53%)
Query: 20 PGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKE 79
PGKL+I + +K+ + + ++ W + + L+I LK+ GF +
Sbjct: 19 PGKLRIAPSGLGWKSPSLAEPFTLPISEIRRFCWSRFARGYELKIILKSKDPVSLDGFSQ 78
Query: 80 TEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQC 139
++D + + K NF + + +KE S++GWNWG F+G+ L FDVN+ AFEIP+ V+
Sbjct: 79 EDLDDLINVIKQNFDMGIEQKEFSIKGWNWGEANFLGSELVFDVNSRPAFEIPISAVTNT 138
Query: 140 T-TGKNEVTVEFHPNDEA------AESLIEMRFYIP---TNEIAGDTDPVEA-----FKD 184
+GKNEV +EF D+ + L+EMR Y+P E A D + VE F +
Sbjct: 139 NLSGKNEVALEFSTTDDKQIPSAQVDELVEMRLYVPGTTAKEDAADGEEVEQNAANLFYE 198
Query: 185 SVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMF 244
S+ +A + A GDAI F+EI LTPRGRYDI ++ + +L GKT+DYK+ S++ +F
Sbjct: 199 SLKERADIGQAAGDAIVSFSEILLLTPRGRYDIDMYETCMRLRGKTYDYKVEYSSINSLF 258
Query: 245 TLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLD 304
LP D + FVI L+PP++QGQTRY FL F +DE E++L E LKEKY K+
Sbjct: 259 LLPKPDEQHVVFVIGLEPPLRQGQTRYPFLVTQFVRDEDMEVDLNIEETVLKEKYADKVK 318
Query: 305 KELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIH 364
P +EV+++I + + RK+T P F H G +AV CSYKA G +Y L++ F+FI
Sbjct: 319 ASYDQPAFEVVSQIFRGLTGRKVTTPAEFLSHEGHAAVKCSYKANEGQLYCLDKSFLFIP 378
Query: 365 KPPIHIRFEEIATVNFARSGGST---RSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIRE 421
KP + + +I V +R G S R+FD L+SG + FS+I + E L F+
Sbjct: 379 KPTLLMNTSDITRVTLSRVGMSVSAARTFDLTFTLRSGTSYQFSNINRVEQSALVAFLES 438
Query: 422 KKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXXXXXXFN 481
K++++ N E D+++E D + F
Sbjct: 439 KQIKIHNDLADETQQTLLTSALDDEDEEGDEEMEEA----------------LSEDEDFQ 482
Query: 482 PDQAESDVAEEYDSNPTPTDSDEDSDASEGT 512
+ +ESDVAEEYD N +D +E + +EG+
Sbjct: 483 AE-SESDVAEEYDENAESSD-EEGASGAEGS 511
>SGD|S000004534 [details] [associations]
symbol:POB3 "Subunit of the heterodimeric FACT complex
(Spt16p-Pob3p)" species:4932 "Saccharomyces cerevisiae" [GO:0031298
"replication fork protection complex" evidence=IDA] [GO:0031491
"nucleosome binding" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0035101 "FACT
complex" evidence=IGI;IDA;IPI] [GO:0034401 "regulation of
transcription by chromatin organization" evidence=IC] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0034724 "DNA
replication-independent nucleosome organization" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0042393 "histone binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IGI;IMP;IPI]
[GO:0000790 "nuclear chromatin" evidence=IDA] InterPro:IPR000969
PRINTS:PR00887 SGD:S000004534 Pfam:PF03531 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006281 GO:GO:0006261
EMBL:BK006946 GO:GO:0000790 GO:GO:0034401 GO:GO:0045899
GO:GO:0031298 EMBL:Z38114 GeneTree:ENSGT00700000104547
GO:GO:0035101 InterPro:IPR013719 Pfam:PF08512 GO:GO:0034724
eggNOG:COG5165 KO:K09272 InterPro:IPR024954 HOGENOM:HOG000180790
OrthoDB:EOG437VP9 OMA:FQKDEET PIR:S48328 RefSeq:NP_013642.1
PDB:2GCJ PDB:2GCL PDB:3F5R PDBsum:2GCJ PDBsum:2GCL PDBsum:3F5R
ProteinModelPortal:Q04636 SMR:Q04636 DIP:DIP-4083N IntAct:Q04636
MINT:MINT-559116 STRING:Q04636 PaxDb:Q04636 PeptideAtlas:Q04636
EnsemblFungi:YML069W GeneID:854933 KEGG:sce:YML069W CYGD:YML069w
EvolutionaryTrace:Q04636 NextBio:977968 Genevestigator:Q04636
GermOnline:YML069W Uniprot:Q04636
Length = 552
Score = 542 (195.9 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
Identities = 121/377 (32%), Positives = 205/377 (54%)
Query: 135 DVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVEAFKDSVMNQASVIN 194
+V + T K E + E P E +++ + +A EAF + + +A +
Sbjct: 183 NVDENMTKKEESSNEVVPKKEDGAEGEDVQMAVEEKSMA------EAFYEELKEKADIGE 236
Query: 195 ATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQN 254
GDAI F ++ TPRGRYDI I+ + +L GKT++YK+ + R+ +LP D +
Sbjct: 237 VAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHH 296
Query: 255 FFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEV 314
V++++PP++QGQT Y FL L F +DE +E++L +++ +E Y+ KL K+ T+ V
Sbjct: 297 LLVLAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIV 356
Query: 315 MAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEE 374
++ ++K + +R++ VPG ++ AV+CS+KA GY+YPL+ F F+ KP ++I F +
Sbjct: 357 LSHVLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSD 416
Query: 375 IATVNFARSGG---STRSFDFEIELKSGV-LHTFSSIEKEEYGKLFDFIREKKLRVKNTG 430
++ VN +R+G S+R+FD E+ L+S TF++I KEE L F++ K LRVKN
Sbjct: 417 VSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKSKNLRVKNED 476
Query: 431 KGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXXXXXXFNPDQAESDVA 490
+ + + GS DE++ + A + D +VA
Sbjct: 477 REVQERLQTALGSDSDEEDINMGSA------------GEDDESVDEDFQVSSDNDADEVA 524
Query: 491 EEYDSNPTPTDSDEDSD 507
EE+DS+ +D++ SD
Sbjct: 525 EEFDSDAALSDAEGGSD 541
Score = 222 (83.2 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
Identities = 55/161 (34%), Positives = 81/161 (50%)
Query: 21 GKLKITDQNIVFKNKKTG--KVEQINGP------DLDFVNWQKLVGTWALRIFLKNGSLH 72
G+ +I D + +K +G Q P +L V W + + L+I KN +
Sbjct: 17 GRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGCRGYDLKINTKNQGVI 76
Query: 73 RFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIP 132
+ GF + + + I + F F I V ++E S+RGWNWG T N + F +N FEIP
Sbjct: 77 QLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRGWNWGKTDLARNEMVFALNGKPTFEIP 136
Query: 133 LRDVSQCT-TGKNEVTVEFHPNDE----AAESLIEMRFYIP 168
++ T KNEV +EF+ DE A + L+EMRFYIP
Sbjct: 137 YARINNTNLTSKNEVGIEFNIQDEEYQPAGDELVEMRFYIP 177
Score = 37 (18.1 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 577 PGISFTEI----AKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKE 623
PG+ T + KK + V KE E V A E+ + A Y+E
Sbjct: 177 PGVIQTNVDENMTKKEESSNEVVPKKEDGAEGEDVQMAVEEKSMAEAFYEE 227
>ASPGD|ASPL0000002272 [details] [associations]
symbol:AN6687 species:162425 "Emericella nidulans"
[GO:0000070 "mitotic sister chromatid segregation" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0071585 "detoxification of cadmium ion"
evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:0071276 "cellular response to cadmium ion"
evidence=IEA] [GO:0030702 "chromatin silencing at centromere"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0035101 "FACT
complex" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF03531 GO:GO:0005634
GO:GO:0005694 GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0006351
EMBL:BN001301 InterPro:IPR013719 Pfam:PF08512 eggNOG:COG5165
KO:K09272 InterPro:IPR024954 EMBL:AACD01000111 RefSeq:XP_664291.1
STRING:Q5AYE3 GeneID:2870474 KEGG:ani:AN6687.2 HOGENOM:HOG000180790
OMA:PVEVKKG OrthoDB:EOG437VP9 Uniprot:Q5AYE3
Length = 575
Score = 518 (187.4 bits), Expect = 1.3e-72, Sum P(3) = 1.3e-72
Identities = 117/355 (32%), Positives = 184/355 (51%)
Query: 182 FKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVL 241
F + +M +A + + GD A F ++ LTPRGR+DI ++ S F+L GKT+DYKI S++
Sbjct: 219 FYELLMEKAEIGDVAGDTFATFLDVLHLTPRGRFDIDMYESSFRLRGKTYDYKIQYSSIK 278
Query: 242 RMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEG 301
+ F LP D V+ L+PP++QGQTRY FL + DE +EL +E+ L+ +Y+
Sbjct: 279 KFFLLPKNDDTHTLIVLGLEPPLRQGQTRYPFLVMQLKLDEEISLELNMTEELLETRYKD 338
Query: 302 KLDKELSGPTYEVMAKIMKVIVNRKITVPGS-FRGHTGTSAVTCSYKAAAGYIYPLERGF 360
KL+ P ++V+ KI + + +K+ +P F H G S V CS KA G +Y L++
Sbjct: 339 KLEPRYEEPIHQVITKIFRGLSGKKVIMPSKDFVSHHGHSGVKCSIKANEGLLYFLDKSL 398
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGS---TRSFDFEIELKSGV-LHTFSSIEKEEYGKLF 416
IF+ KP +I+ E +A V +R GG+ +R+FD + LK+G+ H FS+I +EE L
Sbjct: 399 IFVPKPATYIQMENVAVVTMSRVGGAISASRTFDITVSLKAGMGEHQFSNINREEQQPLE 458
Query: 417 DFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXXX 476
+F + K +R+KN + +DD D +
Sbjct: 459 EFFKAKNIRIKNEMSDDTNALIAAALDNDDMMSSD------EDGGGRPDRGSADEDEESV 512
Query: 477 XXXFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTXXXXXXXXXXTITISEKPR 531
F D ++SDVAEEYDS + S D++ + + +SE+ R
Sbjct: 513 DEDFQAD-SDSDVAEEYDSAHESSGSGSDAEMDDASDAGVDEDEDADADMSEEER 566
Score = 199 (75.1 bits), Expect = 1.3e-72, Sum P(3) = 1.3e-72
Identities = 38/131 (29%), Positives = 70/131 (53%)
Query: 20 PGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKE 79
PGK K+ + + ++ G ++ ++ W + + L+I ++ + + GF +
Sbjct: 15 PGKCKLAETGLGWRPSGGGDTFTLDSSNIGAAQWSRAAKGYELKILSRSSGVIQLDGFDQ 74
Query: 80 TEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQC 139
+ +++ FK + I+V +E ++RGWNWG +F L+F+V N AFE+P ++S
Sbjct: 75 EDFERLSKAFKIWYGINVESREHALRGWNWGKAEFTKAELAFNVQNRPAFEVPYSEISNT 134
Query: 140 T-TGKNEVTVE 149
GKNEV VE
Sbjct: 135 NLAGKNEVAVE 145
Score = 48 (22.0 bits), Expect = 1.3e-72, Sum P(3) = 1.3e-72
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 158 ESLIEMRFYIP 168
+ L+EMRFYIP
Sbjct: 173 DELVEMRFYIP 183
>GENEDB_PFALCIPARUM|PF14_0393 [details] [associations]
symbol:PF14_0393 "structure specific
recognition protein, putative" species:5833 "Plasmodium falciparum"
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000969 PRINTS:PR00887
Pfam:PF03531 GO:GO:0005634 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003697 EMBL:AE014187 InterPro:IPR013719 Pfam:PF08512
KO:K09272 InterPro:IPR024954 OMA:FQKDEET ProtClustDB:CLSZ2434425
RefSeq:XP_001348567.1 ProteinModelPortal:Q8IL56 IntAct:Q8IL56
MINT:MINT-1564957 PRIDE:Q8IL56 EnsemblProtists:PF14_0393:mRNA
GeneID:811975 KEGG:pfa:PF14_0393 EuPathDB:PlasmoDB:PF3D7_1441400
HOGENOM:HOG000282144 Uniprot:Q8IL56
Length = 506
Score = 670 (240.9 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 145/449 (32%), Positives = 251/449 (55%)
Query: 21 GKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHR-----FA 75
G +++++ + +KNKKT V Q D+D W K R+ LK G F
Sbjct: 28 GSFRMSNEFLGWKNKKTNNVYQYKCSDIDEGCWIKTSYN-NNRLHLKLGESKENIIIYFD 86
Query: 76 GFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRD 135
GF + +++I F+ F I + ++++ +GWNWG K + L FD++N AF +P +
Sbjct: 87 GFPDRNVNEITQHFQKYFNIRLNNRKIATKGWNWGEFKLENSNLCFDIDNKYAFNLPTNN 146
Query: 136 VSQCTTG-KNEVTVEFHPNDEA-----AESLIEMRFYIPTNEIAGDTDPVEAFKDSVMNQ 189
++Q K ++ +EF NDE + L E+RFY P + + K+ ++ +
Sbjct: 147 INQLNVQIKTDIAMEFK-NDENNNKGNEDFLAEIRFYYPHEN--DENQNFQNLKNDLLEK 203
Query: 190 ASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHK 249
++ + ++IA + I L PRGRYDI++++S F+LHGK++D+ I + + +M +P
Sbjct: 204 VNIGDTKSESIASLSNIPLLVPRGRYDIEMYSSTFKLHGKSYDFNIQYTNINKMILVPKS 263
Query: 250 DGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSG 309
+ Q + SL +KQGQT Y F+ + N D+ E+++ S+ E+ KY KL+K +SG
Sbjct: 264 NSNQYVLIFSLSNKMKQGQTEYPFILIQLNNDDDMELDISASD-EVMTKY--KLEKTISG 320
Query: 310 PTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIH 369
++V+ K+ +VN+ + VPG +R +TCSY+AA+G +YPL + F+FI KP I
Sbjct: 321 KAHDVVTKLFTALVNKNVIVPGDYRTSKNQHGITCSYRAASGQLYPLNKYFLFIVKPVIL 380
Query: 370 IRFEEIATVNFARSGGST--RSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIREKKLRVK 427
I F++I T++F R+G R F I+ K G+ + +++I+K EY L F++ K + ++
Sbjct: 381 ISFDDIVTLSFQRTGNINQHRFFSLIIKHKRGMSYEYTNIDKSEYNPLLTFLKSKNINIQ 440
Query: 428 NTGKG-EKPNYKEDFGSSDDEKEPDAYLA 455
+ EK K+DF + DE + + Y+A
Sbjct: 441 DDANDLEK---KQDFHNELDESDEEEYVA 466
Score = 51 (23.0 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 483 DQAESDVAEEYDSNPTPTDSDEDSDASE 510
D E VAEE D + D D+D + E
Sbjct: 470 DDEEDYVAEEEDEDDDGDDDDDDEEEEE 497
>UNIPROTKB|Q8IL56 [details] [associations]
symbol:PF14_0393 "Structure specific recognition protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000969 PRINTS:PR00887
Pfam:PF03531 GO:GO:0005634 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0003697 EMBL:AE014187 InterPro:IPR013719 Pfam:PF08512
KO:K09272 InterPro:IPR024954 OMA:FQKDEET ProtClustDB:CLSZ2434425
RefSeq:XP_001348567.1 ProteinModelPortal:Q8IL56 IntAct:Q8IL56
MINT:MINT-1564957 PRIDE:Q8IL56 EnsemblProtists:PF14_0393:mRNA
GeneID:811975 KEGG:pfa:PF14_0393 EuPathDB:PlasmoDB:PF3D7_1441400
HOGENOM:HOG000282144 Uniprot:Q8IL56
Length = 506
Score = 670 (240.9 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 145/449 (32%), Positives = 251/449 (55%)
Query: 21 GKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHR-----FA 75
G +++++ + +KNKKT V Q D+D W K R+ LK G F
Sbjct: 28 GSFRMSNEFLGWKNKKTNNVYQYKCSDIDEGCWIKTSYN-NNRLHLKLGESKENIIIYFD 86
Query: 76 GFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRD 135
GF + +++I F+ F I + ++++ +GWNWG K + L FD++N AF +P +
Sbjct: 87 GFPDRNVNEITQHFQKYFNIRLNNRKIATKGWNWGEFKLENSNLCFDIDNKYAFNLPTNN 146
Query: 136 VSQCTTG-KNEVTVEFHPNDEA-----AESLIEMRFYIPTNEIAGDTDPVEAFKDSVMNQ 189
++Q K ++ +EF NDE + L E+RFY P + + K+ ++ +
Sbjct: 147 INQLNVQIKTDIAMEFK-NDENNNKGNEDFLAEIRFYYPHEN--DENQNFQNLKNDLLEK 203
Query: 190 ASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHK 249
++ + ++IA + I L PRGRYDI++++S F+LHGK++D+ I + + +M +P
Sbjct: 204 VNIGDTKSESIASLSNIPLLVPRGRYDIEMYSSTFKLHGKSYDFNIQYTNINKMILVPKS 263
Query: 250 DGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSG 309
+ Q + SL +KQGQT Y F+ + N D+ E+++ S+ E+ KY KL+K +SG
Sbjct: 264 NSNQYVLIFSLSNKMKQGQTEYPFILIQLNNDDDMELDISASD-EVMTKY--KLEKTISG 320
Query: 310 PTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIH 369
++V+ K+ +VN+ + VPG +R +TCSY+AA+G +YPL + F+FI KP I
Sbjct: 321 KAHDVVTKLFTALVNKNVIVPGDYRTSKNQHGITCSYRAASGQLYPLNKYFLFIVKPVIL 380
Query: 370 IRFEEIATVNFARSGGST--RSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIREKKLRVK 427
I F++I T++F R+G R F I+ K G+ + +++I+K EY L F++ K + ++
Sbjct: 381 ISFDDIVTLSFQRTGNINQHRFFSLIIKHKRGMSYEYTNIDKSEYNPLLTFLKSKNINIQ 440
Query: 428 NTGKG-EKPNYKEDFGSSDDEKEPDAYLA 455
+ EK K+DF + DE + + Y+A
Sbjct: 441 DDANDLEK---KQDFHNELDESDEEEYVA 466
Score = 51 (23.0 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 483 DQAESDVAEEYDSNPTPTDSDEDSDASE 510
D E VAEE D + D D+D + E
Sbjct: 470 DDEEDYVAEEEDEDDDGDDDDDDEEEEE 497
>UNIPROTKB|E9PMD4 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000969 PRINTS:PR00887 Pfam:PF03531 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 EMBL:AP000781 InterPro:IPR024954
HGNC:HGNC:11327 ChiTaRS:SSRP1 IPI:IPI00985291
ProteinModelPortal:E9PMD4 SMR:E9PMD4 PRIDE:E9PMD4
Ensembl:ENST00000526696 ArrayExpress:E9PMD4 Bgee:E9PMD4
Uniprot:E9PMD4
Length = 192
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 127/190 (66%), Positives = 153/190 (80%)
Query: 99 EKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAE 158
EK+L V+GWNWG KF G +LSFD+ + FEIPL +VSQCTTGKNEVT+EFH ND+A
Sbjct: 2 EKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEV 61
Query: 159 SLIEMRFYIPTNEIAGDTDPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIK 218
SL+E+RFY+P + G DPVEAF +V+++A VI ATGDAI +F E+QCLTPRGRYDI+
Sbjct: 62 SLMEVRFYVPPTQEDG-VDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIR 120
Query: 219 IFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLF 278
I+ +F LHGKTFDYKIP +TVLR+F LPHKD RQ FFVISLDPPIKQGQTRYHFL LLF
Sbjct: 121 IYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLF 180
Query: 279 NQDETSEMEL 288
++DE + L
Sbjct: 181 SKDEDISLTL 190
>DICTYBASE|DDB_G0290331 [details] [associations]
symbol:ssrp1 "FACT complex subunit SSRP1"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0035101 "FACT complex" evidence=ISS] [GO:0001672 "regulation of
chromatin assembly or disassembly" evidence=ISS] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000969
PRINTS:PR00887 dictyBase:DDB_G0290331 Pfam:PF03531 GO:GO:0005694
GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006351 GenomeReviews:CM000154_GR
EMBL:AAFI02000162 GO:GO:0001672 GO:GO:0035101 InterPro:IPR013719
Pfam:PF08512 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
OMA:FQKDEET RefSeq:XP_635805.1 HSSP:Q04636
ProteinModelPortal:Q54G78 STRING:Q54G78 PRIDE:Q54G78
EnsemblProtists:DDB0216434 GeneID:8627610 KEGG:ddi:DDB_G0290331
ProtClustDB:CLSZ2434425 Uniprot:Q54G78
Length = 527
Score = 623 (224.4 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
Identities = 139/374 (37%), Positives = 216/374 (57%)
Query: 90 KTNFKIDVPEKELSVRGWNWGG--TKFIGNVLSFDVNNTTAFEI----PLRDVSQCTTGK 143
K F+ + E SV G N T + + D ++ T E+ P+R + G
Sbjct: 132 KVGFEFPISEVSQSVIGANNKNELTLEFHHDKAMDDDDETMVEMRFFTPIRPSKEGEEGG 191
Query: 144 NEVTV-EFHPNDEAAESLIEMRFYIPTNEIAGDTDPVEAFKDSVMNQASVINATGDAIAV 202
E V E DE E E EI+ +E F+ ++MN++ +++ G ++ V
Sbjct: 192 KEKKVGEDGEEDEEDEEDAEKE-----EEISA----LEQFQQTIMNKSDMVSNVGKSLVV 242
Query: 203 FNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDP 262
F+ IQ LTPRGR DI+++ +F +LHGKT DYK+P ++ R+F D + FF+ISLDP
Sbjct: 243 FSAIQFLTPRGRIDIEMYPTFLKLHGKTHDYKVPYESISRLFQFFRPDQKHIFFIISLDP 302
Query: 263 PIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVI 322
PI+QGQT+Y L + F +E +EL ++ EL++K++ +L ++G ++ KI+K +
Sbjct: 303 PIRQGQTKYAHLVIQFQAEENIHLELNLTD-ELQQKFKDQLSPIMNGNANALICKILKAL 361
Query: 323 VNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFAR 382
+KIT+PG+F+ +G +++ CS KA GY+YPLER F F+HKPP +I+FE+I+ + FAR
Sbjct: 362 TGKKITIPGNFQSDSGANSIKCSLKANEGYLYPLERCFFFVHKPPTYIKFEDISNIEFAR 421
Query: 383 ------SGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPN 436
GGS R+FD I LK+ F +I++EEY LF+F++EKKL + N
Sbjct: 422 YGAPSVRGGSNRTFDLSINLKNSTSIQFVNIQREEYPSLFNFLKEKKLSILNPVTTGPAM 481
Query: 437 YKEDFGSSDDEKEP 450
+D S DD+ EP
Sbjct: 482 IIDDDDSDDDDYEP 495
Score = 236 (88.1 bits), Expect = 2.0e-16, Sum P(3) = 2.0e-16
Identities = 56/172 (32%), Positives = 94/172 (54%)
Query: 6 EFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGT-WALRI 64
+F +S R + G LK T NI +K++ GK+E ++ D+ NW ++ + L +
Sbjct: 10 QFNNISLGGRISGTRGILKFTTNNITWKSEN-GKIETVSSSDIKRANWARVTPRIFQLIL 68
Query: 65 FLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEK-ELSVRGWNWGGTKFIGNVLSFDV 123
+K G+ +F GFKE + + + + + + E ELS +G NWG K G ++ F
Sbjct: 69 SIKGGATVKFDGFKEQDYEVVRKYLSDQYNVSPLEIIELSSKGCNWGEVKVNGPMIQFTT 128
Query: 124 NN-TTAFEIPLRDVSQCTTG---KNEVTVEFHPN---DEAAESLIEMRFYIP 168
++ FE P+ +VSQ G KNE+T+EFH + D+ E+++EMRF+ P
Sbjct: 129 DHGKVGFEFPISEVSQSVIGANNKNELTLEFHHDKAMDDDDETMVEMRFFTP 180
Score = 41 (19.5 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 483 DQAESDVAEEYDSNPTPTDSDEDSDASE 510
D +SD ++Y+ + + ++SDE S + E
Sbjct: 484 DDDDSD-DDDYEPSESGSESDEGSASDE 510
Score = 39 (18.8 bits), Expect = 2.0e-16, Sum P(3) = 2.0e-16
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 414 KLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDA 452
+ F IR K + GK +K ED G D+E E DA
Sbjct: 176 RFFTPIRPSK-EGEEGGKEKKVG--ED-GEEDEEDEEDA 210
Score = 38 (18.4 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 480 FNPDQAESDVAEEYDSNPTPTDSDEDSDASE 510
+ P ++ S+ E S+ + +S+ED A +
Sbjct: 493 YEPSESGSESDEGSASDESEEESEEDKKAKK 523
>CGD|CAL0005561 [details] [associations]
symbol:POB3 species:5476 "Candida albicans" [GO:0031298
"replication fork protection complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0035101 "FACT complex" evidence=IEA]
[GO:0005658 "alpha DNA polymerase:primase complex" evidence=IEA]
[GO:0000790 "nuclear chromatin" evidence=IEA] [GO:0030447
"filamentous growth" evidence=IMP] [GO:0030466 "chromatin silencing
at silent mating-type cassette" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0045899 "positive
regulation of RNA polymerase II transcriptional preinitiation
complex assembly" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0034724 "DNA replication-independent
nucleosome organization" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0030702 "chromatin silencing at
centromere" evidence=IEA] [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] InterPro:IPR000969 PRINTS:PR00887
CGD:CAL0005561 Pfam:PF03531 GO:GO:0005634 GO:GO:0005694
GO:GO:0071216 GO:GO:0036180 GO:GO:0006355 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0006351 GO:GO:0009267 EMBL:AACQ01000008 EMBL:AACQ01000007
GO:GO:0036170 InterPro:IPR013719 Pfam:PF08512 RefSeq:XP_722461.1
RefSeq:XP_722602.1 ProteinModelPortal:Q5ALL8 SMR:Q5ALL8
STRING:Q5ALL8 GeneID:3635827 GeneID:3635964 KEGG:cal:CaO19.1560
KEGG:cal:CaO19.9133 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
Uniprot:Q5ALL8
Length = 538
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 149/487 (30%), Positives = 255/487 (52%)
Query: 33 KNKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTN 92
KNK ++ + D + Q+L + + + + SL + + +T++ + F N
Sbjct: 68 KNKGVVSLDGFDHDDFTQLK-QELTRNFHINLEHREHSLRGW-NWGKTDLARNELIFNVN 125
Query: 93 FK--IDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQCTTGKNEVTVEF 150
K ++P ++S N G + + D NN EI T +NE T+
Sbjct: 126 NKPAFEIPYSDIS--NSNLTGKNEVALEFNLD-NNKNGDEIVEMRFYVPGTIENETTIV- 181
Query: 151 HPNDEAAESLIEMRFYIPTNEIAGDTDPVEAFKDSVMNQASVINATGDAIAVFNEIQCLT 210
+E +IE + +T + F + + ++A + G+AI F+++ LT
Sbjct: 182 --KNETNGDVIE-------EAVVNETSAAQQFYEQLKDKADIGQVAGEAIVSFSDVLFLT 232
Query: 211 PRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTR 270
PRGRYDI ++ S +L GKT+DYKI + R+F+LP D + V+ +DPP++QGQTR
Sbjct: 233 PRGRYDIDMYPSSLRLRGKTYDYKIQYEQIERIFSLPKPDETHHLIVLQIDPPLRQGQTR 292
Query: 271 YHFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVP 330
Y FL L F +DE +E+EL S+++ ++KY+ +L K PT VM+ ++ + RK+ P
Sbjct: 293 YPFLVLQFVKDEETELELNVSDEDFEKKYKDRLKKTYDAPTNVVMSHCLRGLTERKLITP 352
Query: 331 GSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARSGG---ST 387
G+F+ + V CS KA+ GY++PL+R F+F+ KP ++I + EI++V +R+GG ++
Sbjct: 353 GAFQSRYLQAGVPCSVKASEGYLFPLDRCFLFVTKPTLYIPYSEISSVVMSRTGGGVSAS 412
Query: 388 RSFDFEIE-LKSGVLHTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGS-SD 445
R+FD E+ + S H FS+I++EE + F +EK ++VKN K K + ++
Sbjct: 413 RTFDLEVNVIGSNQPHVFSNIDREEQEFIESFCKEKGVKVKNEEKIAKARLAKALEQEAN 472
Query: 446 DEKEPDAYLARVKXXXXXXXXXXXXXXXXXXXXXFNPDQAESDVAEEYDSNPTPT-DSDE 504
D+ + DA + F ++SDVAEE+DS+ P+ D DE
Sbjct: 473 DDDDEDADMG------------SAGDEDEDEDVDFQSG-SDSDVAEEFDSDAAPSSDDDE 519
Query: 505 D-SDASE 510
+ +D+ E
Sbjct: 520 EMADSKE 526
Score = 262 (97.3 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 83/306 (27%), Positives = 145/306 (47%)
Query: 21 GKLKITDQNIVFK-NKKTGKVEQ---INGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAG 76
G+++I + + +K + +G Q + ++ +W + + LR+ KN + G
Sbjct: 18 GRMRIAESGLGWKASASSGSTSQPFLLPREEILIASWSRGSKGYELRVQTKNKGVVSLDG 77
Query: 77 FKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDV 136
F + ++ NF I++ +E S+RGWNWG T N L F+VNN AFEIP D+
Sbjct: 78 FDHDDFTQLKQELTRNFHINLEHREHSLRGWNWGKTDLARNELIFNVNNKPAFEIPYSDI 137
Query: 137 SQCT-TGKNEVTVEFH-PNDEAAESLIEMRFYIPTNEIAGDTDPVEAFKDSVMNQASVIN 194
S TGKNEV +EF+ N++ + ++EMRFY+P I +T V+ + + + +V+N
Sbjct: 138 SNSNLTGKNEVALEFNLDNNKNGDEIVEMRFYVP-GTIENETTIVKNETNGDVIEEAVVN 196
Query: 195 ATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKT----FDYKI-PISTVLRMFTLPHK 249
T A + +++ G+ + SF + T +D + P S LR T +K
Sbjct: 197 ETSAAQQFYEQLKDKADIGQVAGEAIVSFSDVLFLTPRGRYDIDMYPSSLRLRGKTYDYK 256
Query: 250 -DGRQNFFVISLDPPIKQGQTRYHFLTLLFNQD-ETSEMELPFSEQELKEKYEGKLDKEL 307
Q + SL P +T +H + L + + PF + + E +L+ +
Sbjct: 257 IQYEQIERIFSLPKP---DET-HHLIVLQIDPPLRQGQTRYPFLVLQFVKDEETELELNV 312
Query: 308 SGPTYE 313
S +E
Sbjct: 313 SDEDFE 318
>UNIPROTKB|Q5ALL8 [details] [associations]
symbol:POB3 "FACT complex subunit POB3" species:237561
"Candida albicans SC5314" [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000969 PRINTS:PR00887 CGD:CAL0005561 Pfam:PF03531
GO:GO:0005634 GO:GO:0005694 GO:GO:0071216 GO:GO:0036180
GO:GO:0006355 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 GO:GO:0006351 GO:GO:0009267
EMBL:AACQ01000008 EMBL:AACQ01000007 GO:GO:0036170
InterPro:IPR013719 Pfam:PF08512 RefSeq:XP_722461.1
RefSeq:XP_722602.1 ProteinModelPortal:Q5ALL8 SMR:Q5ALL8
STRING:Q5ALL8 GeneID:3635827 GeneID:3635964 KEGG:cal:CaO19.1560
KEGG:cal:CaO19.9133 eggNOG:COG5165 KO:K09272 InterPro:IPR024954
Uniprot:Q5ALL8
Length = 538
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 149/487 (30%), Positives = 255/487 (52%)
Query: 33 KNKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTN 92
KNK ++ + D + Q+L + + + + SL + + +T++ + F N
Sbjct: 68 KNKGVVSLDGFDHDDFTQLK-QELTRNFHINLEHREHSLRGW-NWGKTDLARNELIFNVN 125
Query: 93 FK--IDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQCTTGKNEVTVEF 150
K ++P ++S N G + + D NN EI T +NE T+
Sbjct: 126 NKPAFEIPYSDIS--NSNLTGKNEVALEFNLD-NNKNGDEIVEMRFYVPGTIENETTIV- 181
Query: 151 HPNDEAAESLIEMRFYIPTNEIAGDTDPVEAFKDSVMNQASVINATGDAIAVFNEIQCLT 210
+E +IE + +T + F + + ++A + G+AI F+++ LT
Sbjct: 182 --KNETNGDVIE-------EAVVNETSAAQQFYEQLKDKADIGQVAGEAIVSFSDVLFLT 232
Query: 211 PRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTR 270
PRGRYDI ++ S +L GKT+DYKI + R+F+LP D + V+ +DPP++QGQTR
Sbjct: 233 PRGRYDIDMYPSSLRLRGKTYDYKIQYEQIERIFSLPKPDETHHLIVLQIDPPLRQGQTR 292
Query: 271 YHFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVP 330
Y FL L F +DE +E+EL S+++ ++KY+ +L K PT VM+ ++ + RK+ P
Sbjct: 293 YPFLVLQFVKDEETELELNVSDEDFEKKYKDRLKKTYDAPTNVVMSHCLRGLTERKLITP 352
Query: 331 GSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARSGG---ST 387
G+F+ + V CS KA+ GY++PL+R F+F+ KP ++I + EI++V +R+GG ++
Sbjct: 353 GAFQSRYLQAGVPCSVKASEGYLFPLDRCFLFVTKPTLYIPYSEISSVVMSRTGGGVSAS 412
Query: 388 RSFDFEIE-LKSGVLHTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGS-SD 445
R+FD E+ + S H FS+I++EE + F +EK ++VKN K K + ++
Sbjct: 413 RTFDLEVNVIGSNQPHVFSNIDREEQEFIESFCKEKGVKVKNEEKIAKARLAKALEQEAN 472
Query: 446 DEKEPDAYLARVKXXXXXXXXXXXXXXXXXXXXXFNPDQAESDVAEEYDSNPTPT-DSDE 504
D+ + DA + F ++SDVAEE+DS+ P+ D DE
Sbjct: 473 DDDDEDADMG------------SAGDEDEDEDVDFQSG-SDSDVAEEFDSDAAPSSDDDE 519
Query: 505 D-SDASE 510
+ +D+ E
Sbjct: 520 EMADSKE 526
Score = 262 (97.3 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 83/306 (27%), Positives = 145/306 (47%)
Query: 21 GKLKITDQNIVFK-NKKTGKVEQ---INGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAG 76
G+++I + + +K + +G Q + ++ +W + + LR+ KN + G
Sbjct: 18 GRMRIAESGLGWKASASSGSTSQPFLLPREEILIASWSRGSKGYELRVQTKNKGVVSLDG 77
Query: 77 FKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDV 136
F + ++ NF I++ +E S+RGWNWG T N L F+VNN AFEIP D+
Sbjct: 78 FDHDDFTQLKQELTRNFHINLEHREHSLRGWNWGKTDLARNELIFNVNNKPAFEIPYSDI 137
Query: 137 SQCT-TGKNEVTVEFH-PNDEAAESLIEMRFYIPTNEIAGDTDPVEAFKDSVMNQASVIN 194
S TGKNEV +EF+ N++ + ++EMRFY+P I +T V+ + + + +V+N
Sbjct: 138 SNSNLTGKNEVALEFNLDNNKNGDEIVEMRFYVP-GTIENETTIVKNETNGDVIEEAVVN 196
Query: 195 ATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKT----FDYKI-PISTVLRMFTLPHK 249
T A + +++ G+ + SF + T +D + P S LR T +K
Sbjct: 197 ETSAAQQFYEQLKDKADIGQVAGEAIVSFSDVLFLTPRGRYDIDMYPSSLRLRGKTYDYK 256
Query: 250 -DGRQNFFVISLDPPIKQGQTRYHFLTLLFNQD-ETSEMELPFSEQELKEKYEGKLDKEL 307
Q + SL P +T +H + L + + PF + + E +L+ +
Sbjct: 257 IQYEQIERIFSLPKP---DET-HHLIVLQIDPPLRQGQTRYPFLVLQFVKDEETELELNV 312
Query: 308 SGPTYE 313
S +E
Sbjct: 313 SDEDFE 318
>UNIPROTKB|E9PPZ7 [details] [associations]
symbol:SSRP1 "FACT complex subunit SSRP1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] InterPro:IPR000969 PRINTS:PR00887 Pfam:PF03531
GO:GO:0005634 GO:GO:0003677 EMBL:AP000781 InterPro:IPR024954
HGNC:HGNC:11327 ChiTaRS:SSRP1 IPI:IPI00981139
ProteinModelPortal:E9PPZ7 SMR:E9PPZ7 PRIDE:E9PPZ7
Ensembl:ENST00000529002 UCSC:uc010rjq.1 ArrayExpress:E9PPZ7
Bgee:E9PPZ7 Uniprot:E9PPZ7
Length = 154
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 100/154 (64%), Positives = 123/154 (79%)
Query: 99 EKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAE 158
EK+L V+GWNWG KF G +LSFD+ + FEIPL +VSQCTTGKNEVT+EFH ND+A
Sbjct: 2 EKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEV 61
Query: 159 SLIEMRFYIPTNEIAGDTDPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIK 218
SL+E+RFY+P + G DPVEAF +V+++A VI ATGDAI +F E+QCLTPRGRYDI+
Sbjct: 62 SLMEVRFYVPPTQEDG-VDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIR 120
Query: 219 IFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGR 252
I+ +F LHGKTFDYKIP +TVLR+F LPHKD R
Sbjct: 121 IYPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQR 154
>FB|FBgn0010228 [details] [associations]
symbol:HmgZ "HMG protein Z" species:7227 "Drosophila
melanogaster" [GO:0003677 "DNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] InterPro:IPR009071 Pfam:PF00505
EMBL:AE013599 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
eggNOG:NOG320947 GeneTree:ENSGT00700000104547 EMBL:X71139
EMBL:AY113439 PIR:S41765 RefSeq:NP_726106.1 RefSeq:NP_726107.1
UniGene:Dm.20604 ProteinModelPortal:Q06943 SMR:Q06943 PaxDb:Q06943
PRIDE:Q06943 EnsemblMetazoa:FBtr0071673 EnsemblMetazoa:FBtr0071674
GeneID:37480 KEGG:dme:Dmel_CG17921 CTD:37480 FlyBase:FBgn0010228
InParanoid:Q06943 OMA:EANGGTD OrthoDB:EOG4W0VWS PhylomeDB:Q06943
ChiTaRS:HmgZ GenomeRNAi:37480 NextBio:803858 Bgee:Q06943
GermOnline:CG17921 Uniprot:Q06943
Length = 111
Score = 212 (79.7 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 37/66 (56%), Positives = 53/66 (80%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAYM+W N+ RE+IKKDNPG T+IAK+GGELW+ + K+K E+++K K KE+YN+
Sbjct: 9 PLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL--KDKTEWEQKAIKMKEEYNK 66
Query: 617 ALKAYK 622
A+K Y+
Sbjct: 67 AVKEYE 72
>FB|FBgn0004362 [details] [associations]
symbol:HmgD "High mobility group protein D" species:7227
"Drosophila melanogaster" [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=IDA]
[GO:0003680 "AT DNA binding" evidence=IDA] [GO:0008301 "DNA
binding, bending" evidence=IDA;NAS] [GO:0007517 "muscle organ
development" evidence=IMP] [GO:0048813 "dendrite morphogenesis"
evidence=IMP] InterPro:IPR009071 Pfam:PF00505 EMBL:AE013599
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0048813
GO:GO:0007517 GO:GO:0006325 GO:GO:0003680 eggNOG:NOG320947
EMBL:M77023 EMBL:X71138 EMBL:AM294353 EMBL:AM294354 EMBL:AM294355
EMBL:AM294356 EMBL:AM294357 EMBL:AM294358 EMBL:AM294359
EMBL:AM294360 EMBL:AM294361 EMBL:AM294362 EMBL:AM294363
EMBL:AY118333 PIR:A44382 RefSeq:NP_001163244.1 RefSeq:NP_726109.1
RefSeq:NP_726110.1 UniGene:Dm.7318 PDB:1E7J PDB:1HMA PDB:1QRV
PDB:3NM9 PDBsum:1E7J PDBsum:1HMA PDBsum:1QRV PDBsum:3NM9
ProteinModelPortal:Q05783 SMR:Q05783 DIP:DIP-22805N IntAct:Q05783
MINT:MINT-843935 STRING:Q05783 PaxDb:Q05783 PRIDE:Q05783
EnsemblMetazoa:FBtr0071708 EnsemblMetazoa:FBtr0071709
EnsemblMetazoa:FBtr0301410 GeneID:37481 KEGG:dme:Dmel_CG17950
CTD:37481 FlyBase:FBgn0004362 GeneTree:ENSGT00700000104547
InParanoid:Q05783 OMA:WRAMSEQ OrthoDB:EOG4TX98R PhylomeDB:Q05783
ChiTaRS:HmgD EvolutionaryTrace:Q05783 GenomeRNAi:37481
NextBio:803865 Bgee:Q05783 GermOnline:CG17950 Uniprot:Q05783
Length = 112
Score = 207 (77.9 bits), Expect = 7.9e-16, P = 7.9e-16
Identities = 35/66 (53%), Positives = 52/66 (78%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAYM+W N RE IK++NPGI TE+AK+GGELW+ + K+K+E++ K KAK+DY+
Sbjct: 8 PLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYDR 65
Query: 617 ALKAYK 622
A+K ++
Sbjct: 66 AVKEFE 71
>UNIPROTKB|P40618 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
HOVERGEN:HBG009000 UniGene:Gga.4513 CTD:3149 KO:K11296 EMBL:X63463
IPI:IPI00580706 PIR:S22359 RefSeq:NP_990626.2
ProteinModelPortal:P40618 SMR:P40618 STRING:P40618 GeneID:396232
KEGG:gga:396232 NextBio:20816284 Uniprot:P40618
Length = 202
Score = 152 (58.6 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK NPGIS ++AKK GE+W +S EK Y+ K K KE Y +
Sbjct: 96 PPSAFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEK 155
Query: 617 ALKAYK 622
+ YK
Sbjct: 156 DVADYK 161
Score = 140 (54.3 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNPGI--SFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ KK NP + +F E +KK E WKT+SSKEKA++DE K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKDY 78
Score = 42 (19.8 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 261 DPPIKQGQ-TRYHFLTLLFNQDETSEM-ELP--FSE--QELKEKYEGKLDKELSGPTYEV 314
DP +G+ + Y F ++ + E+P F+E ++ E+++ KE + ++
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKA--KFDE 62
Query: 315 MAKIMKVIVNRKITVPGSFRG 335
MAK KV +R++ G +G
Sbjct: 63 MAKADKVRYDREMKDYGPAKG 83
>UNIPROTKB|F1NPU8 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IEA] [GO:0032075 "positive regulation of
nuclease activity" evidence=IEA] [GO:0042056 "chemoattractant
activity" evidence=IEA] [GO:0043234 "protein complex" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0045654 "positive regulation of
megakaryocyte differentiation" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0050786 "RAGE receptor binding"
evidence=IEA] [GO:0060326 "cell chemotaxis" evidence=IEA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0048471 GO:GO:0045892 GO:GO:0005615 GO:GO:0043234
GO:GO:0005730 GO:GO:0003684 GO:GO:0001938 GO:GO:0045944
GO:GO:0003700 GO:GO:0048545 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0044212
GO:GO:0045648 GO:GO:0045654 GO:GO:0060326 GO:GO:0000793
GO:GO:0042056 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GeneTree:ENSGT00560000076717 GO:GO:0006288 OMA:KIKNDHP
IPI:IPI00579203 EMBL:AADN02008951 Ensembl:ENSGALT00000017483
Uniprot:F1NPU8
Length = 207
Score = 154 (59.3 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 28/66 (42%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK D+PG+S + AKK GE+W S+K+K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 122 (48.0 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F E ++K E WKT+SSKEK +++E K Y+
Sbjct: 13 MSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGDKARYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKNY 78
Score = 39 (18.8 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 404 FSSIEKEEYGKLFDFIREKKLR----VKN--TGKGEKPNYKEDFGSSDDEKEPDAY 453
+ ++ +E GK + + K R +KN KGEK K+D + ++ P A+
Sbjct: 49 WKTMSSKEKGKFEEMAKGDKARYDREMKNYVPPKGEKKGKKKD--PNAPKRPPSAF 102
>ASPGD|ASPL0000037691 [details] [associations]
symbol:AN2885 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0070898 "RNA
polymerase III transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005694 GO:GO:0006355 GO:GO:0043565 GO:GO:0006281
EMBL:BN001306 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AACD01000051 GO:GO:0031491 HOGENOM:HOG000197861 GO:GO:0051123
GO:GO:0032301 OMA:FFANDNR OrthoDB:EOG4S7P0P GO:GO:0034724
GO:GO:0070898 RefSeq:XP_660489.1 ProteinModelPortal:Q5B995
SMR:Q5B995 STRING:Q5B995 EnsemblFungi:CADANIAT00010204
GeneID:2874036 KEGG:ani:AN2885.2 Uniprot:Q5B995
Length = 106
Score = 164 (62.8 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 29/65 (44%), Positives = 45/65 (69%)
Query: 558 MSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEA 617
+SAYM + ND R+K++++NPGISF ++ K GE WK++S KE+ Y++K K+ Y +
Sbjct: 31 LSAYMFFANDNRDKVREENPGISFGQVGKMLGEKWKSLSDKERKPYEDKAAADKKRYEDE 90
Query: 618 LKAYK 622
AYK
Sbjct: 91 KAAYK 95
>MGI|MGI:1098219 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0045578 "negative regulation of B cell differentiation"
evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:1098219 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045638
Pfam:PF09011 GO:GO:0045578 HOGENOM:HOG000197861 HOVERGEN:HBG009000
OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149 KO:K11296 EMBL:AF022465
EMBL:BC011276 EMBL:BC083352 IPI:IPI00228879 RefSeq:NP_032279.1
UniGene:Mm.336087 ProteinModelPortal:O54879 SMR:O54879
STRING:O54879 PhosphoSite:O54879 PaxDb:O54879 PRIDE:O54879
Ensembl:ENSMUST00000015361 Ensembl:ENSMUST00000072699
Ensembl:ENSMUST00000088874 Ensembl:ENSMUST00000114582 GeneID:15354
KEGG:mmu:15354 InParanoid:O54879 NextBio:287964 Bgee:O54879
CleanEx:MM_HMGB3 Genevestigator:O54879
GermOnline:ENSMUSG00000015217 Uniprot:O54879
Length = 200
Score = 145 (56.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P S + ++ ++ R KIK NPGIS ++AKK GE+W +S EK Y K K KE Y +
Sbjct: 96 PPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEK 155
Query: 617 ALKAYK 622
+ YK
Sbjct: 156 DVADYK 161
Score = 137 (53.3 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNPGI--SFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ KK NP + +F E +KK E WKT+SSKEK+++DE K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKDY 78
Score = 45 (20.9 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 261 DPPIKQGQ-TRYHFLTLLFNQDETSEM-ELP--FSE--QELKEKYEGKLDKELSGPTYEV 314
DP +G+ + Y F ++ + E+P F+E ++ E+++ KE S ++
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKS--KFDE 62
Query: 315 MAKIMKVIVNRKITVPGSFRG 335
MAK KV +R++ G +G
Sbjct: 63 MAKADKVRYDREMKDYGPAKG 83
>ZFIN|ZDB-GENE-030131-341 [details] [associations]
symbol:hmgb1a "high-mobility group box 1a"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0009409 "response to cold"
evidence=IDA] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-341 GO:GO:0005886 GO:GO:0005634 GO:GO:0003677
GO:GO:0009409 GO:GO:0030900 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 HSSP:P07155
HOVERGEN:HBG009000 EMBL:BC045917 IPI:IPI00489314 UniGene:Dr.150247
UniGene:Dr.158952 ProteinModelPortal:Q7ZVC6 SMR:Q7ZVC6 PRIDE:Q7ZVC6
ArrayExpress:Q7ZVC6 Bgee:Q7ZVC6 Uniprot:Q7ZVC6
Length = 205
Score = 157 (60.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 26/66 (39%), Positives = 46/66 (69%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R K+K++ PG+S ++AK+ GE+W +SS+EK Y++K K KE Y +
Sbjct: 97 PPSAFFIFCSEFRPKVKEETPGLSIGDVAKRLGEMWNKISSEEKQPYEKKAAKLKEKYEK 156
Query: 617 ALKAYK 622
+ AY+
Sbjct: 157 DIAAYR 162
Score = 117 (46.2 bits), Expect = 0.00018, P = 0.00018
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNPG--ISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 12 MSSYAYFVQTCREEHKKKHPEATVNFSEFSKKCSERWKTMSAKEKGKFEDMAKLDKARYE 71
Query: 616 EALKAY 621
+K Y
Sbjct: 72 REMKNY 77
>RGD|1564407 [details] [associations]
symbol:Hmgb3 "high mobility group box 3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0045578 "negative regulation of B
cell differentiation" evidence=ISO] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISO]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1564407 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 CTD:3149 KO:K11296 OMA:DNEKQPY
EMBL:BC158739 EMBL:CH474187 IPI:IPI00955625 RefSeq:NP_001166812.1
RefSeq:XP_003751731.1 UniGene:Rn.203482 SMR:B0BN99 STRING:B0BN99
Ensembl:ENSRNOT00000015044 GeneID:100912369 GeneID:305373
KEGG:rno:100912369 KEGG:rno:305373 NextBio:654455
Genevestigator:B0BN99 Uniprot:B0BN99
Length = 200
Score = 144 (55.7 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P S + ++ ++ R KIK NPGIS ++AKK GE+W +S EK Y K K KE Y +
Sbjct: 96 PPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYMTKAAKLKEKYEK 155
Query: 617 ALKAYK 622
+ YK
Sbjct: 156 DVADYK 161
Score = 137 (53.3 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNPGI--SFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ KK NP + +F E +KK E WKT+SSKEK+++DE K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKDY 78
Score = 45 (20.9 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 261 DPPIKQGQ-TRYHFLTLLFNQDETSEM-ELP--FSE--QELKEKYEGKLDKELSGPTYEV 314
DP +G+ + Y F ++ + E+P F+E ++ E+++ KE S ++
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKS--KFDE 62
Query: 315 MAKIMKVIVNRKITVPGSFRG 335
MAK KV +R++ G +G
Sbjct: 63 MAKADKVRYDREMKDYGPAKG 83
>RGD|1559962 [details] [associations]
symbol:RGD1559962 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074365 Ncbi:XP_001074365
Length = 209
Score = 153 (58.9 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 27/66 (40%), Positives = 45/66 (68%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S + AKK GE+W S+K+K Y++K K KE+Y +
Sbjct: 98 PPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEEYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 117 (46.2 bits), Expect = 0.00019, P = 0.00019
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ K +P ++F E +KK E WKT+S+KEK+++++ K Y+
Sbjct: 13 MSSYAFFVQTCREEHKNKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKNY 78
>UNIPROTKB|P26584 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9031
"Gallus gallus" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0048471
GO:GO:0006357 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:M83235 EMBL:M80574 IPI:IPI00579203
PIR:JC1114 PIR:JC1129 RefSeq:NP_990817.1 UniGene:Gga.4061
ProteinModelPortal:P26584 SMR:P26584 STRING:P26584 PRIDE:P26584
GeneID:396482 KEGG:gga:396482 eggNOG:NOG320947 InParanoid:P26584
NextBio:20816521 Uniprot:P26584
Length = 207
Score = 148 (57.2 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK D+PG+S + AKK GE+W +K+K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQLAKDKQPYEQKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 122 (48.0 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F E ++K E WKT+SSKEK +++E K Y+
Sbjct: 13 MSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEEMAKGDKARYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKNY 78
Score = 39 (18.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 404 FSSIEKEEYGKLFDFIREKKLR----VKN--TGKGEKPNYKEDFGSSDDEKEPDAY 453
+ ++ +E GK + + K R +KN KGEK K+D + ++ P A+
Sbjct: 49 WKTMSSKEKGKFEEMAKGDKARYDREMKNYVPPKGEKKGKKKD--PNAPKRPPSAF 102
>UNIPROTKB|F1MF42 [details] [associations]
symbol:LOC618297 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02009820
IPI:IPI00687888 Ensembl:ENSBTAT00000027565 OMA:INTCREE
Uniprot:F1MF42
Length = 196
Score = 150 (57.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S + AKK GE+W S+K+K Y++K K KE Y +
Sbjct: 87 PPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 146
Query: 617 ALKAYK 622
+ AY+
Sbjct: 147 DIAAYR 152
Score = 113 (44.8 bits), Expect = 0.00043, P = 0.00043
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 566 NDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAY 621
N RE+ KK +P ++F E +KK E WKT+S+KEK+++++ K Y+ +K Y
Sbjct: 10 NTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY 67
>UNIPROTKB|G4MS97 [details] [associations]
symbol:MGG_04489 "Non-histone chromosomal protein 6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR009071 Pfam:PF00505
GO:GO:0043565 GO:GO:0006338 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CM001231
GO:GO:0031491 GO:GO:0051123 GO:GO:0032301 GO:GO:0034724
GO:GO:0070898 RefSeq:XP_003710967.1 ProteinModelPortal:G4MS97
SMR:G4MS97 EnsemblFungi:MGG_04489T0 GeneID:2678075
KEGG:mgr:MGG_04489 Uniprot:G4MS97
Length = 101
Score = 149 (57.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 25/65 (38%), Positives = 43/65 (66%)
Query: 558 MSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEA 617
+SAYM + N+ R+ ++++NPG++F ++ K GE WK +S K++A YD K K+ Y +
Sbjct: 28 LSAYMFFANEQRDNVREENPGVTFGQVGKILGERWKALSDKQRAPYDAKAAADKKRYEDE 87
Query: 618 LKAYK 622
AY+
Sbjct: 88 KAAYQ 92
>UNIPROTKB|P36194 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:D14314 IPI:IPI00591130
PIR:I50254 UniGene:Gga.4513 ProteinModelPortal:P36194 SMR:P36194
STRING:P36194 PRIDE:P36194 Uniprot:P36194
Length = 201
Score = 148 (57.2 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P S + ++ ++ R KIK NPGIS ++AKK GE+W +S EK Y+ K K KE Y +
Sbjct: 95 PPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEK 154
Query: 617 ALKAYK 622
+ YK
Sbjct: 155 DVADYK 160
Score = 132 (51.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNPGI--SFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ KK NP + +F E +KK E WKT+SSKEKA++DE K Y+
Sbjct: 13 MSAYAFFVQTCREEHKK-NPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYD 71
Query: 616 EALKAY 621
+K Y
Sbjct: 72 REMKDY 77
>UNIPROTKB|F1N927 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:AADN02005232 IPI:IPI00818014
Ensembl:ENSGALT00000036454 ArrayExpress:F1N927 Uniprot:F1N927
Length = 214
Score = 147 (56.8 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+SSKEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAKADKLRYE 72
Query: 616 EALKAY 621
+ +K Y
Sbjct: 73 KEMKNY 78
Score = 44 (20.5 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 404 FSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDE-KEPDA 452
+ ++ +E GK D + KLR + E NY G + + K+P+A
Sbjct: 49 WKTMSSKEKGKFEDMAKADKLRYEK----EMKNYVPPKGETKKKFKDPNA 94
>UNIPROTKB|Q9YH06 [details] [associations]
symbol:HMG1 "High mobility group 1 protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005125 "cytokine
activity" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0009986
"cell surface" evidence=IEA] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0017055
"negative regulation of RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0030295 "protein
kinase activator activity" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005737 GO:GO:0017053 GO:GO:0005615
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0003700
GO:GO:0045860 GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280
GO:GO:0045819 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0045639 HSSP:P07155 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 GO:GO:0010858 GO:GO:2000426
EMBL:AADN02005232 EMBL:Y17968 EMBL:AJ851648 IPI:IPI00595982
RefSeq:NP_990233.1 UniGene:Gga.4638 SMR:Q9YH06 STRING:Q9YH06
Ensembl:ENSGALT00000027593 GeneID:395724 KEGG:gga:395724
InParanoid:Q9YH06 NextBio:20815793 Uniprot:Q9YH06
Length = 215
Score = 147 (56.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEFRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+SSKEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFEDMAKADKLRYE 72
Query: 616 EALKAY 621
+ +K Y
Sbjct: 73 KEMKNY 78
Score = 44 (20.5 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 404 FSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDE-KEPDA 452
+ ++ +E GK D + KLR + E NY G + + K+P+A
Sbjct: 49 WKTMSSKEKGKFEDMAKADKLRYEK----EMKNYVPPKGETKKKFKDPNA 94
>UNIPROTKB|D4A9T3 [details] [associations]
symbol:D4A9T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564375
Ensembl:ENSRNOT00000044787 Uniprot:D4A9T3
Length = 184
Score = 146 (56.5 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>UNIPROTKB|P07156 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:10029
"Cricetulus griseus" [GO:0000793 "condensed chromosome"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011
GO:GO:0017055 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:Y00365
PIR:A27853 PDB:1HSM PDB:1HSN PDB:1NHM PDB:1NHN PDBsum:1HSM
PDBsum:1HSN PDBsum:1NHM PDBsum:1NHN ProteinModelPortal:P07156
SMR:P07156 PRIDE:P07156 EvolutionaryTrace:P07156 Uniprot:P07156
Length = 180
Score = 146 (56.5 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 63 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 122
Query: 617 ALKAYK 622
+ AY+
Sbjct: 123 DIAAYR 128
>UNIPROTKB|E1BIU3 [details] [associations]
symbol:LOC532409 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02004182
IPI:IPI00839111 RefSeq:XP_003585778.1 Ensembl:ENSBTAT00000044962
GeneID:532409 KEGG:bta:532409 OMA:FLENTRC ArrayExpress:E1BIU3
Uniprot:E1BIU3
Length = 186
Score = 145 (56.1 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P S + ++ ++ R KIK NPGIS ++AKK GE+W +S EK Y K K KE Y +
Sbjct: 96 PPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEK 155
Query: 617 ALKAYK 622
+ YK
Sbjct: 156 DVADYK 161
Score = 131 (51.2 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNPGI--SFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ KK NP + +F E +KK E WKT+S KEK+++DE K Y+
Sbjct: 13 MSAYSFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEIAKADKVRYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKDY 78
>FB|FBgn0038979 [details] [associations]
symbol:CG7046 species:7227 "Drosophila melanogaster"
[GO:0000785 "chromatin" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 FlyBase:FBgn0038979 EMBL:AY070828
HSSP:Q05783 ProteinModelPortal:Q8T957 SMR:Q8T957 STRING:Q8T957
PRIDE:Q8T957 eggNOG:NOG253857 InParanoid:Q8T957 OrthoDB:EOG4MCVGR
ArrayExpress:Q8T957 Bgee:Q8T957 Uniprot:Q8T957
Length = 138
Score = 145 (56.1 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 557 PMSAYMMWFNDM-REKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
PMSA+M+W N R+ I+ ++P S E++ KGGE+W+ ++ + K + E +KA +Y
Sbjct: 11 PMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEYK 70
Query: 616 EALK---AYKE 623
E L+ A+KE
Sbjct: 71 EKLEKWNAFKE 81
>UNIPROTKB|P40673 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9913
"Bos taurus" [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISS] [GO:0000793 "condensed chromosome" evidence=ISS]
[GO:0008301 "DNA binding, bending" evidence=ISS;IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006288 "base-excision repair, DNA ligation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0042393
"histone binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA]
[GO:0060326 "cell chemotaxis" evidence=IEA] [GO:0050786 "RAGE
receptor binding" evidence=IEA] [GO:0048545 "response to steroid
hormone stimulus" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045654 "positive regulation of megakaryocyte
differentiation" evidence=IEA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043234 "protein complex" evidence=IEA] [GO:0042056
"chemoattractant activity" evidence=IEA] [GO:0032075 "positive
regulation of nuclease activity" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0001938 "positive
regulation of endothelial cell proliferation" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0005615
GO:GO:0043234 GO:GO:0005730 GO:GO:0003684 GO:GO:0001938
GO:GO:0045944 GO:GO:0003700 GO:GO:0006357 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 GO:GO:0006338 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0044212 GO:GO:0007289 GO:GO:0003690
GO:GO:0003697 GO:GO:0045648 GO:GO:0045654 GO:GO:0060326
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 GO:GO:0033151 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:BC109755 IPI:IPI00689856
RefSeq:NP_001032705.1 UniGene:Bt.6397 ProteinModelPortal:P40673
SMR:P40673 STRING:P40673 PRIDE:P40673 Ensembl:ENSBTAT00000020096
GeneID:540444 KEGG:bta:540444 CTD:3148 InParanoid:P40673
OMA:KIKNDHP OrthoDB:EOG4TTGK2 NextBio:20878641 Uniprot:P40673
Length = 209
Score = 150 (57.9 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S + AKK GE+W S+K+K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F E +KK E WKT+S+KEK+++++ K Y+
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKNY 78
>UNIPROTKB|P26583 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0007289 "spermatid nucleus differentiation"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0019904 "protein domain specific binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048015 "phosphatidylinositol-mediated signaling" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0006325 "chromatin organization" evidence=NAS]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006334
"nucleosome assembly" evidence=NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IDA] [GO:0001938
"positive regulation of endothelial cell proliferation"
evidence=IDA] [GO:0042056 "chemoattractant activity" evidence=IDA]
[GO:0060326 "cell chemotaxis" evidence=IDA] [GO:0050786 "RAGE
receptor binding" evidence=IGI] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0043234 "protein complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=IMP] [GO:0005615 "extracellular space"
evidence=IDA] [GO:0071222 "cellular response to lipopolysaccharide"
evidence=IEP] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0032075 "positive
regulation of nuclease activity" evidence=IDA] [GO:0033151 "V(D)J
recombination" evidence=ISS] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IDA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=IDA] [GO:0045648 "positive regulation of
erythrocyte differentiation" evidence=IMP] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=IMP]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006309 "apoptotic DNA fragmentation" evidence=TAS] [GO:0006915
"apoptotic process" evidence=TAS] [GO:0006921 "cellular component
disassembly involved in execution phase of apoptosis" evidence=TAS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0050918 "positive chemotaxis" evidence=IDA]
Reactome:REACT_578 InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471 GO:GO:0045892
GO:GO:0005615 GO:GO:0043234 GO:GO:0005654 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0003690 GO:GO:0003697
EMBL:CH471056 GO:GO:0045648 GO:GO:0045654 GO:GO:0048015
GO:GO:0060326 GO:GO:0006309 GO:GO:0000793 GO:GO:0042056
GO:GO:0006334 GO:GO:0043388 Pfam:PF09011 GO:GO:0032075
GO:GO:0033151 GO:GO:0006265 HOGENOM:HOG000197861 KO:K11295
HOVERGEN:HBG009000 GO:GO:0006288 HPA:HPA003506 GO:GO:0050786
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:M83665 EMBL:X62534
EMBL:BT019782 EMBL:AK311864 EMBL:BC001063 EMBL:BC100019 EMBL:Z17240
IPI:IPI00219097 PIR:A42425 PIR:S30221 RefSeq:NP_001124160.1
RefSeq:NP_001124161.1 RefSeq:NP_002120.1 UniGene:Hs.434953
ProteinModelPortal:P26583 SMR:P26583 IntAct:P26583 MINT:MINT-240190
STRING:P26583 PhosphoSite:P26583 DMDM:123374 PaxDb:P26583
PeptideAtlas:P26583 PRIDE:P26583 DNASU:3148 Ensembl:ENST00000296503
Ensembl:ENST00000438704 Ensembl:ENST00000446922 GeneID:3148
KEGG:hsa:3148 UCSC:uc003ita.3 GeneCards:GC04M174252 HGNC:HGNC:5000
MIM:163906 neXtProt:NX_P26583 PharmGKB:PA35091 InParanoid:P26583
ChiTaRS:HMGB2 GenomeRNAi:3148 NextBio:12476 PMAP-CutDB:P26583
ArrayExpress:P26583 Bgee:P26583 CleanEx:HS_HMGB2
Genevestigator:P26583 GermOnline:ENSG00000164104 Uniprot:P26583
Length = 209
Score = 150 (57.9 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S + AKK GE+W S+K+K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F E +KK E WKT+S+KEK+++++ K Y+
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKNY 78
>RGD|1561694 [details] [associations]
symbol:RGD1561694 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_003752741 Ncbi:XP_003752789
Length = 209
Score = 150 (57.9 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S + AKK GE+W S+K+K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 120 (47.3 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS Y + RE+ KK +P ++F E +KK E WKT+S+KEK+++++ K Y+
Sbjct: 13 MSLYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKNY 78
>FB|FBgn0038978 [details] [associations]
symbol:CG7045 species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0000785 "chromatin" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 EMBL:AE014297 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104547 HSSP:Q05783 OrthoDB:EOG4MCVGR
RefSeq:NP_651055.1 UniGene:Dm.1280 ProteinModelPortal:Q9VCZ5
SMR:Q9VCZ5 MINT:MINT-1649734 STRING:Q9VCZ5 PRIDE:Q9VCZ5
EnsemblMetazoa:FBtr0084258 GeneID:42650 KEGG:dme:Dmel_CG7045
UCSC:CG7045-RA FlyBase:FBgn0038978 InParanoid:Q9VCZ5
PhylomeDB:Q9VCZ5 GenomeRNAi:42650 NextBio:829878
ArrayExpress:Q9VCZ5 Bgee:Q9VCZ5 Uniprot:Q9VCZ5
Length = 126
Score = 143 (55.4 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 557 PMSAYMMWFNDM-REKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
PMSA+M+W N R+ IK ++P S E++ KGGE+W+ ++ ++K + E A +Y
Sbjct: 11 PMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEYK 70
Query: 616 EALKAY 621
E LK +
Sbjct: 71 EKLKQW 76
>UNIPROTKB|E2QY30 [details] [associations]
symbol:HMGB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071222 "cellular response to
lipopolysaccharide" evidence=IEA] [GO:0060326 "cell chemotaxis"
evidence=IEA] [GO:0050786 "RAGE receptor binding" evidence=IEA]
[GO:0048545 "response to steroid hormone stimulus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045654 "positive regulation of megakaryocyte differentiation"
evidence=IEA] [GO:0045648 "positive regulation of erythrocyte
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043234 "protein
complex" evidence=IEA] [GO:0042056 "chemoattractant activity"
evidence=IEA] [GO:0032075 "positive regulation of nuclease
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0008301 "DNA binding, bending" evidence=IEA]
[GO:0007289 "spermatid nucleus differentiation" evidence=IEA]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IEA]
[GO:0005615 "extracellular space" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0048471
GO:GO:0045892 GO:GO:0005615 GO:GO:0043234 GO:GO:0005730
GO:GO:0003684 GO:GO:0001938 GO:GO:0045944 GO:GO:0003700
GO:GO:0071222 GO:GO:0048545 GO:GO:0008584 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 KO:K11295 GeneTree:ENSGT00560000076717
GO:GO:0006288 CTD:3148 OMA:KIKNDHP EMBL:AAEX03014309
RefSeq:XP_543194.2 Ensembl:ENSCAFT00000012535 GeneID:486068
KEGG:cfa:486068 NextBio:20859918 Uniprot:E2QY30
Length = 210
Score = 150 (57.9 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S + AKK GE+W S+K+K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F E +KK E WKT+S+KEK+++++ K Y+
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKNY 78
>UNIPROTKB|P17741 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9823
"Sus scrofa" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0008301 "DNA binding,
bending" evidence=ISS;IDA] [GO:0051103 "DNA ligation involved in
DNA repair" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0006357 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0000793 Pfam:PF09011 GO:GO:0006265
HOGENOM:HOG000197861 KO:K11295 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OrthoDB:EOG4TTGK2 EMBL:J02895 PIR:A34719
RefSeq:NP_999228.1 UniGene:Ssc.226 PDB:1J3C PDB:1J3D PDB:1J3X
PDBsum:1J3C PDBsum:1J3D PDBsum:1J3X ProteinModelPortal:P17741
SMR:P17741 GeneID:397130 KEGG:ssc:397130 EvolutionaryTrace:P17741
Uniprot:P17741
Length = 210
Score = 150 (57.9 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S + AKK GE+W S+K+K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F E +KK E WKT+S+KEK+++++ K Y+
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKNY 78
>RGD|1564519 [details] [associations]
symbol:RGD1564519 "similar to High mobility group protein 2
(HMG-2)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001063065 Ncbi:XP_001063065
Length = 210
Score = 150 (57.9 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S + AKK GE+W S+K+K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 122 (48.0 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F E +KK E WKT+S+KEK+++++ K Y+
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKNY 78
>RGD|69291 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10116 "Rattus
norvegicus" [GO:0000793 "condensed chromosome" evidence=ISO;ISS]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003690 "double-stranded DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0005615
"extracellular space" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISO;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0007049 "cell cycle" evidence=IEP]
[GO:0007283 "spermatogenesis" evidence=ISO] [GO:0007289 "spermatid
nucleus differentiation" evidence=ISO] [GO:0007399 "nervous system
development" evidence=IDA] [GO:0008289 "lipid binding" evidence=IDA]
[GO:0008301 "DNA binding, bending" evidence=ISO;ISS] [GO:0008584
"male gonad development" evidence=ISO] [GO:0019904 "protein domain
specific binding" evidence=ISO] [GO:0031100 "organ regeneration"
evidence=IEP] [GO:0031493 "nucleosomal histone binding"
evidence=IDA] [GO:0032075 "positive regulation of nuclease activity"
evidence=ISO] [GO:0042056 "chemoattractant activity" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] [GO:0043388 "positive
regulation of DNA binding" evidence=ISO] [GO:0044212 "transcription
regulatory region DNA binding" evidence=ISO] [GO:0045648 "positive
regulation of erythrocyte differentiation" evidence=ISO] [GO:0045654
"positive regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO;IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS]
[GO:0048545 "response to steroid hormone stimulus" evidence=ISO]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive regulation
of DNA metabolic process" evidence=IMP] [GO:0060326 "cell
chemotaxis" evidence=ISO] [GO:0071222 "cellular response to
lipopolysaccharide" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:69291
GO:GO:0005634 GO:GO:0048471 GO:GO:0045893 GO:GO:0007399
GO:GO:0031100 GO:GO:0006357 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0007049 GO:GO:0008289 GO:GO:0003690 GO:GO:0000793
GO:GO:0051054 GO:GO:0031493 Pfam:PF09011 HOGENOM:HOG000197861
KO:K11295 GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000
GO:GO:0006288 CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:D84418
EMBL:BC078866 EMBL:BC089854 EMBL:BC107455 IPI:IPI00876582
RefSeq:NP_058883.1 RefSeq:XP_001063065.2 RefSeq:XP_573272.3
UniGene:Rn.218982 UniGene:Rn.2874 ProteinModelPortal:P52925
SMR:P52925 STRING:P52925 DNASU:29395 Ensembl:ENSRNOT00000017635
Ensembl:ENSRNOT00000046874 GeneID:29395 GeneID:498072 KEGG:rno:29395
KEGG:rno:498072 UCSC:RGD:69291 CTD:498072 InParanoid:P52925
NextBio:609027 Genevestigator:P52925 GermOnline:ENSRNOG00000013167
GermOnline:ENSRNOG00000030313 Uniprot:P52925
Length = 210
Score = 150 (57.9 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S + AKK GE+W S+K+K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 122 (48.0 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F E +KK E WKT+S+KEK+++++ K Y+
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKNY 78
>UNIPROTKB|E7EQU1 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00640781
ProteinModelPortal:E7EQU1 SMR:E7EQU1 PRIDE:E7EQU1
Ensembl:ENST00000455596 ArrayExpress:E7EQU1 Bgee:E7EQU1
Uniprot:E7EQU1
Length = 193
Score = 142 (55.0 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P S + ++ ++ R KIK NPGIS ++AKK GE+W ++ EK Y K K KE Y +
Sbjct: 96 PPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEK 155
Query: 617 ALKAYK 622
+ YK
Sbjct: 156 DVADYK 161
Score = 133 (51.9 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNPGI--SFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ KK NP + +F E +KK E WKT+S KEK+++DE K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKDY 78
>UNIPROTKB|E7ES08 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00643317
ProteinModelPortal:E7ES08 SMR:E7ES08 PRIDE:E7ES08
Ensembl:ENST00000419110 ArrayExpress:E7ES08 Bgee:E7ES08
Uniprot:E7ES08
Length = 188
Score = 142 (55.0 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P S + ++ ++ R KIK NPGIS ++AKK GE+W ++ EK Y K K KE Y +
Sbjct: 96 PPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEK 155
Query: 617 ALKAYK 622
+ YK
Sbjct: 156 DVADYK 161
Score = 133 (51.9 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNPGI--SFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ KK NP + +F E +KK E WKT+S KEK+++DE K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKDY 78
>UNIPROTKB|Q32L31 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9913
"Bos taurus" [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IDA] [GO:0005694
"chromosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006310
GO:GO:0003690 Pfam:PF09011 HSSP:P48431 HOGENOM:HOG000197861
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2
eggNOG:NOG320947 EMBL:BC109793 IPI:IPI00883385
RefSeq:NP_001069753.2 RefSeq:NP_001106728.1 UniGene:Bt.62966
ProteinModelPortal:Q32L31 SMR:Q32L31 Ensembl:ENSBTAT00000005793
Ensembl:ENSBTAT00000006785 GeneID:613729 KEGG:bta:613729 CTD:3149
InParanoid:Q32L31 KO:K11296 OMA:DNEKQPY NextBio:20898733
ArrayExpress:Q32L31 Uniprot:Q32L31
Length = 200
Score = 145 (56.1 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P S + ++ ++ R KIK NPGIS ++AKK GE+W +S EK Y K K KE Y +
Sbjct: 96 PPSGFFLFCSEFRPKIKSANPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEK 155
Query: 617 ALKAYK 622
+ YK
Sbjct: 156 DVADYK 161
Score = 133 (51.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNPGI--SFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ KK NP + +F E +KK E WKT+S KEK+++DE K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKDY 78
>UNIPROTKB|F1RQ19 [details] [associations]
symbol:LOC100517745 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 KO:K11296 OMA:DNEKQPY
EMBL:CU929821 RefSeq:XP_003135516.1 UniGene:Ssc.27311
Ensembl:ENSSSCT00000013934 GeneID:100517745 KEGG:ssc:100517745
Uniprot:F1RQ19
Length = 202
Score = 146 (56.5 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P S + ++ ++ R KIK NPGIS ++AKK GE+W +S EK Y K K KE Y +
Sbjct: 96 PPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEK 155
Query: 617 ALKAYK 622
+ YK
Sbjct: 156 DVADYK 161
Score = 133 (51.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNPGI--SFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ KK NP + +F E +KK E WKT+S KEK+++DE K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKDY 78
>UNIPROTKB|J9NVS3 [details] [associations]
symbol:HMGB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 OMA:DNEKQPY
EMBL:AAEX03027044 EMBL:AAEX03027045 Ensembl:ENSCAFT00000045229
Uniprot:J9NVS3
Length = 219
Score = 150 (57.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P S + ++ ++ R KIK NPGIS ++AKK GE+W +S EK Y+ K K KE Y +
Sbjct: 114 PPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEK 173
Query: 617 ALKAYK 622
+ YK
Sbjct: 174 DVADYK 179
Score = 133 (51.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNPGI--SFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ KK NP + +F E +KK E WKT+S KEK+++DE K Y+
Sbjct: 31 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYD 90
Query: 616 EALKAY 621
+K Y
Sbjct: 91 REMKDY 96
>TAIR|locus:505006135 [details] [associations]
symbol:HMGB2 "high mobility group B2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0000785 "chromatin" evidence=TAS]
[GO:0003682 "chromatin binding" evidence=TAS] [GO:0006333
"chromatin assembly or disassembly" evidence=RCA;TAS] [GO:0030527
"structural constituent of chromatin" evidence=TAS] [GO:0006096
"glycolysis" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
"response to temperature stimulus" evidence=RCA] [GO:0009651
"response to salt stress" evidence=RCA] [GO:0046686 "response to
cadmium ion" evidence=RCA] [GO:0003677 "DNA binding"
evidence=ISS;IDA] InterPro:IPR009071 Pfam:PF00505 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0003677
GO:GO:0000785 EMBL:AC069251 GO:GO:0003700 GO:GO:0003682
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0006333 HSSP:P07155 EMBL:Y14072 EMBL:AF370248
EMBL:AY063064 EMBL:AK118543 EMBL:AB493468 EMBL:AY084731
IPI:IPI00532636 IPI:IPI00657279 IPI:IPI00846437 PIR:F86339
PIR:T51597 RefSeq:NP_001031074.1 RefSeq:NP_001077569.1
RefSeq:NP_564123.1 UniGene:At.21298 ProteinModelPortal:O49596
SMR:O49596 STRING:O49596 PaxDb:O49596 PRIDE:O49596
EnsemblPlants:AT1G20693.1 GeneID:838658 KEGG:ath:AT1G20693
TAIR:At1g20693 HOGENOM:HOG000197860 InParanoid:O49596 OMA:YVAKANK
PhylomeDB:O49596 ProtClustDB:CLSN2687884 Genevestigator:O49596
GO:GO:0030527 Uniprot:O49596
Length = 144
Score = 139 (54.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 557 PMSAYMMWFNDMREKIKKDNP-GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
P SA+ ++ D RE KK+NP S + K G+ WK++S EKA Y K K K +Y
Sbjct: 41 PASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYE 100
Query: 616 EALKAYKE 623
+ +KAY +
Sbjct: 101 KNIKAYNK 108
>MGI|MGI:96157 [details] [associations]
symbol:Hmgb2 "high mobility group box 2" species:10090 "Mus
musculus" [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0001938 "positive regulation of endothelial cell proliferation"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003684
"damaged DNA binding" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISO]
[GO:0005615 "extracellular space" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IC] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006288 "base-excision
repair, DNA ligation" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0007289 "spermatid
nucleus differentiation" evidence=IMP] [GO:0007399 "nervous system
development" evidence=ISO] [GO:0008289 "lipid binding"
evidence=ISO] [GO:0008301 "DNA binding, bending" evidence=ISO]
[GO:0008584 "male gonad development" evidence=IMP] [GO:0019904
"protein domain specific binding" evidence=IPI] [GO:0031493
"nucleosomal histone binding" evidence=ISO] [GO:0032075 "positive
regulation of nuclease activity" evidence=ISO] [GO:0042056
"chemoattractant activity" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0043234 "protein
complex" evidence=ISO] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO;IDA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=ISO] [GO:0045648 "positive regulation
of erythrocyte differentiation" evidence=ISO] [GO:0045654 "positive
regulation of megakaryocyte differentiation" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO;IMP]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0048545 "response to steroid hormone stimulus" evidence=IMP]
[GO:0050786 "RAGE receptor binding" evidence=ISO] [GO:0050918
"positive chemotaxis" evidence=ISO] [GO:0051054 "positive
regulation of DNA metabolic process" evidence=ISO] [GO:0060326
"cell chemotaxis" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 MGI:MGI:96157 Pfam:PF00505
GO:GO:0005634 GO:GO:0048471 GO:GO:0045892 GO:GO:0043066
GO:GO:0005615 GO:GO:0043234 GO:GO:0005730 GO:GO:0003684
GO:GO:0001938 GO:GO:0045944 GO:GO:0003700 GO:GO:0071222
GO:GO:0048545 GO:GO:0008584 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0044212 GO:GO:0007289 GO:GO:0045648 GO:GO:0045654
GO:GO:0060326 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
Pfam:PF09011 GO:GO:0032075 HOGENOM:HOG000197861 KO:K11295
GeneTree:ENSGT00560000076717 HOVERGEN:HBG009000 GO:GO:0006288
CTD:3148 OMA:KIKNDHP OrthoDB:EOG4TTGK2 EMBL:X67668 EMBL:Z46757
EMBL:AF267733 EMBL:AK003773 EMBL:AK008443 EMBL:AK012568
EMBL:AK135296 EMBL:AK135297 EMBL:AK146212 EMBL:BC002050
EMBL:BC046759 EMBL:BC083108 IPI:IPI00462291 PIR:S26062 PIR:S54774
RefSeq:NP_032278.1 UniGene:Mm.279998 UniGene:Mm.470487
UniGene:Mm.490424 ProteinModelPortal:P30681 SMR:P30681 DIP:DIP-899N
MINT:MINT-4097539 STRING:P30681 PhosphoSite:P30681 PaxDb:P30681
PRIDE:P30681 Ensembl:ENSMUST00000067925 GeneID:97165 KEGG:mmu:97165
UCSC:uc009lsx.2 InParanoid:P30681 NextBio:352589 Bgee:P30681
CleanEx:MM_HMGB2 Genevestigator:P30681
GermOnline:ENSMUSG00000054717 Uniprot:P30681
Length = 210
Score = 147 (56.8 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S + AKK GE+W S+K+K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 122 (48.0 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F E +KK E WKT+S+KEK+++++ K Y+
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDLAKSDKARYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKNY 78
>RGD|1585821 [details] [associations]
symbol:LOC680968 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001059688 Ncbi:XP_001059688
Length = 213
Score = 146 (56.5 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>RGD|1589841 [details] [associations]
symbol:LOC690940 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001076232 Ncbi:XP_001076232
Length = 214
Score = 146 (56.5 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W +S +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASDDKQPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
AY+
Sbjct: 158 DTAAYR 163
Score = 126 (49.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E++KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>RGD|1593466 [details] [associations]
symbol:LOC689398 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001068941 Ncbi:XP_001068941
Length = 214
Score = 146 (56.5 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W +S +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTASDDKQPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
AY+
Sbjct: 158 DTAAYR 163
Score = 126 (49.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E++KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEVSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>RGD|1586285 [details] [associations]
symbol:LOC691220 "hypothetical protein LOC691220" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 146 (56.5 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIPAYR 163
Score = 123 (48.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>RGD|1588313 [details] [associations]
symbol:LOC679451 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1560584
RGD:1586285 RGD:1588313 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 OrthoDB:EOG4KWJV1 KO:K10802
GeneTree:ENSGT00560000076717 UniGene:Rn.4121 EMBL:CH474054
IPI:IPI00557035 RefSeq:NP_001102843.1 UniGene:Rn.151172
Ensembl:ENSRNOT00000047553 GeneID:679571 KEGG:rno:679571 CTD:434174
NextBio:716771 Uniprot:D3ZCR3
Length = 214
Score = 146 (56.5 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIPAYR 163
Score = 123 (48.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>RGD|1596979 [details] [associations]
symbol:LOC678705 "hypothetical protein LOC678705" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_001053005
Ncbi:XP_001053005
Length = 214
Score = 146 (56.5 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEIWNNTAADDKQPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>UNIPROTKB|P10103 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9913
"Bos taurus" [GO:0050918 "positive chemotaxis" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0006288 "base-excision repair, DNA ligation" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0033151 "V(D)J
recombination" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=NAS] [GO:0042393 "histone binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0001773 "myeloid dendritic
cell activation" evidence=IDA] [GO:0042056 "chemoattractant
activity" evidence=IDA] [GO:0002407 "dendritic cell chemotaxis"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0070491 "repressing transcription factor binding" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043280 "positive regulation of cysteine-type endopeptidase
activity involved in apoptotic process" evidence=IEA] [GO:0043065
"positive regulation of apoptotic process" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0009986
GO:GO:0005730 GO:GO:0002437 GO:GO:0003684 GO:GO:0045944
GO:GO:0003700 GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0043065 GO:GO:0003690 GO:GO:0003697 GO:GO:0043280
GO:GO:0042393 GO:GO:0000793 GO:GO:0042056 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 EMBL:X12796 EMBL:BT030587 EMBL:BC102929
EMBL:M26110 IPI:IPI00710114 PIR:S01947 RefSeq:NP_788785.1
UniGene:Bt.49650 ProteinModelPortal:P10103 SMR:P10103 STRING:P10103
PRIDE:P10103 Ensembl:ENSBTAT00000024094 GeneID:282691
KEGG:bta:282691 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 InParanoid:P10103 NextBio:20806359 GO:GO:0006288
Uniprot:P10103
Length = 215
Score = 146 (56.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>UNIPROTKB|Q6YKA4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0043388 "positive regulation of
DNA binding" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0009986 "cell surface" evidence=IEA] [GO:0006288 "base-excision
repair, DNA ligation" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053
GO:GO:0009986 GO:GO:0005730 GO:GO:0002437 GO:GO:0003677
GO:GO:0045944 GO:GO:0003700 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0043065
GO:GO:0043280 GO:GO:0000793 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 OMA:GEDAMRK
KO:K10802 GO:GO:0017055 CTD:3146 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 GO:GO:0006288 EMBL:AY135519 EMBL:AY135521
RefSeq:NP_001002937.1 UniGene:Cfa.416 ProteinModelPortal:Q6YKA4
SMR:Q6YKA4 STRING:Q6YKA4 PRIDE:Q6YKA4 Ensembl:ENSCAFT00000010639
GeneID:403170 KEGG:cfa:403170 InParanoid:Q6YKA4 NextBio:20816914
Uniprot:Q6YKA4
Length = 215
Score = 146 (56.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>UNIPROTKB|P09429 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0001654 "eye development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0010858
"calcium-dependent protein kinase regulator activity" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0030324 "lung development" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0045639 "positive regulation of
myeloid cell differentiation" evidence=IEA] [GO:0045819 "positive
regulation of glycogen catabolic process" evidence=IEA] [GO:0051384
"response to glucocorticoid stimulus" evidence=IEA] [GO:2000426
"negative regulation of apoptotic cell clearance" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006288 "base-excision repair, DNA ligation" evidence=IDA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IDA]
[GO:0031175 "neuron projection development" evidence=ISS]
[GO:0050786 "RAGE receptor binding" evidence=ISS] [GO:0043388
"positive regulation of DNA binding" evidence=IDA] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IDA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IDA] [GO:0005125 "cytokine activity"
evidence=ISS] [GO:0001773 "myeloid dendritic cell activation"
evidence=ISS] [GO:0002407 "dendritic cell chemotaxis" evidence=ISS]
[GO:0042056 "chemoattractant activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0051103 "DNA ligation involved in DNA
repair" evidence=ISS] [GO:0009986 "cell surface" evidence=IDA]
[GO:0002437 "inflammatory response to antigenic stimulus"
evidence=IEP] [GO:0005615 "extracellular space" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS;IMP] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0017053 "transcriptional repressor complex"
evidence=IDA] [GO:0033151 "V(D)J recombination" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0070491
"repressing transcription factor binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006309 "apoptotic DNA fragmentation"
evidence=TAS] [GO:0006915 "apoptotic process" evidence=TAS]
[GO:0006921 "cellular component disassembly involved in execution
phase of apoptosis" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0050918 "positive chemotaxis"
evidence=ISS] Reactome:REACT_578 InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
Reactome:REACT_6900 GO:GO:0005615 GO:GO:0005654 GO:GO:0009986
GO:GO:0002437 GO:GO:0003684 GO:GO:0030324 EMBL:CH471075
GO:GO:0045944 GO:GO:0051384 GO:GO:0043005 GO:GO:0045087
GO:GO:0003700 GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648
GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0003690 GO:GO:0003697
GO:GO:0043280 GO:GO:0045819 GO:GO:0005125 GO:GO:0006309
GO:GO:0000793 Pathway_Interaction_DB:amb2_neutrophils_pathway
GO:GO:0042056 GO:GO:0031175 GO:GO:0001654 GO:GO:0043388
GO:GO:0002407 GO:GO:0001773 Pfam:PF09011 GO:GO:0033151
GO:GO:0006265 GO:GO:0045639 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861
OMA:GEDAMRK KO:K10802 GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000
GO:GO:0006288 EMBL:X12597 EMBL:U51677 EMBL:D63874 EMBL:EF157968
EMBL:AY377859 EMBL:AK291494 EMBL:AK122825 EMBL:CR749614
EMBL:CR456863 EMBL:BT006940 EMBL:BT020159 EMBL:EU012027
EMBL:AL353648 EMBL:BC003378 EMBL:BC030981 EMBL:BC066889
EMBL:BC067732 EMBL:BC141844 IPI:IPI00419258 PIR:S02826
RefSeq:NP_002119.1 UniGene:Hs.434102 UniGene:Hs.593339
UniGene:Hs.596078 UniGene:Hs.741195 PDB:2LY4 PDB:2YRQ PDBsum:2LY4
PDBsum:2YRQ ProteinModelPortal:P09429 SMR:P09429 DIP:DIP-24195N
IntAct:P09429 MINT:MINT-153055 STRING:P09429 PhosphoSite:P09429
DMDM:123369 DOSAC-COBS-2DPAGE:P09429 PaxDb:P09429
PeptideAtlas:P09429 PRIDE:P09429 DNASU:3146 Ensembl:ENST00000339872
Ensembl:ENST00000341423 Ensembl:ENST00000399494
Ensembl:ENST00000405805 GeneID:3146 KEGG:hsa:3146 UCSC:uc001usx.3
GeneCards:GC13M031032 H-InvDB:HIX0030745 HGNC:HGNC:4983
HPA:CAB005873 HPA:HPA003506 MIM:163905 neXtProt:NX_P09429
PharmGKB:PA188 InParanoid:P09429 PhylomeDB:P09429 ChiTaRS:HMGB1
EvolutionaryTrace:P09429 GenomeRNAi:3146 NextBio:12470
ArrayExpress:P09429 Bgee:P09429 CleanEx:HS_HMGB1
Genevestigator:P09429 GermOnline:ENSG00000189403 GO:GO:0010858
GO:GO:0050786 GO:GO:2000426 Uniprot:P09429
Length = 215
Score = 146 (56.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>UNIPROTKB|F2Z594 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:2000426 "negative regulation of apoptotic cell
clearance" evidence=IEA] [GO:0070491 "repressing transcription
factor binding" evidence=IEA] [GO:0051384 "response to
glucocorticoid stimulus" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045639 "positive regulation
of myeloid cell differentiation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0043280
"positive regulation of cysteine-type endopeptidase activity
involved in apoptotic process" evidence=IEA] [GO:0043065 "positive
regulation of apoptotic process" evidence=IEA] [GO:0043005 "neuron
projection" evidence=IEA] [GO:0033151 "V(D)J recombination"
evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
[GO:0030295 "protein kinase activator activity" evidence=IEA]
[GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=IEA]
[GO:0010858 "calcium-dependent protein kinase regulator activity"
evidence=IEA] [GO:0009986 "cell surface" evidence=IEA] [GO:0006288
"base-excision repair, DNA ligation" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005615 "extracellular space"
evidence=IEA] [GO:0005125 "cytokine activity" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0002437 "inflammatory response to
antigenic stimulus" evidence=IEA] [GO:0001654 "eye development"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005737
GO:GO:0017053 GO:GO:0005615 GO:GO:0009986 GO:GO:0005730
GO:GO:0002437 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0003700 GO:GO:0045860
GO:GO:0030295 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0043065 GO:GO:0043280 GO:GO:0045819
GO:GO:0000793 GO:GO:0001654 GO:GO:0043388 Pfam:PF09011
GO:GO:0033151 GO:GO:0045639 OMA:GEDAMRK GO:GO:0017055
GeneTree:ENSGT00560000076717 GO:GO:0006288 GO:GO:0010858
GO:GO:2000426 EMBL:CU062617 ProteinModelPortal:F2Z594 SMR:F2Z594
PRIDE:F2Z594 Ensembl:ENSSSCT00000010221 Uniprot:F2Z594
Length = 215
Score = 146 (56.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>RGD|1591683 [details] [associations]
symbol:LOC681718 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1591683
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076717 IPI:IPI00767302
Ensembl:ENSRNOT00000045504 OMA:NNTASED ArrayExpress:F1MA29
Uniprot:F1MA29
Length = 215
Score = 146 (56.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>RGD|2802 [details] [associations]
symbol:Hmgb1 "high mobility group box 1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0000400 "four-way
junction DNA binding" evidence=IDA] [GO:0000401 "open form four-way
junction DNA binding" evidence=IDA] [GO:0000402 "crossed form
four-way junction DNA binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=IMP] [GO:0001654 "eye development" evidence=ISO] [GO:0001934
"positive regulation of protein phosphorylation" evidence=ISO]
[GO:0002053 "positive regulation of mesenchymal cell proliferation"
evidence=IDA] [GO:0002437 "inflammatory response to antigenic
stimulus" evidence=ISO] [GO:0003681 "bent DNA binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005125 "cytokine activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005615
"extracellular space" evidence=ISO;IDA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0006288 "base-excision repair, DNA
ligation" evidence=ISO] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0006935 "chemotaxis"
evidence=IDA] [GO:0007399 "nervous system development" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0008097 "5S rRNA
binding" evidence=IDA] [GO:0008134 "transcription factor binding"
evidence=ISO;IDA] [GO:0008156 "negative regulation of DNA
replication" evidence=IDA] [GO:0008201 "heparin binding"
evidence=IDA;TAS] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0008301 "DNA binding, bending"
evidence=ISO;IDA] [GO:0009408 "response to heat" evidence=IEP]
[GO:0009749 "response to glucose stimulus" evidence=IEP] [GO:0009986
"cell surface" evidence=ISO] [GO:0010858 "calcium-dependent protein
kinase regulator activity" evidence=ISO] [GO:0010942 "positive
regulation of cell death" evidence=IMP] [GO:0010976 "positive
regulation of neuron projection development" evidence=IMP]
[GO:0014911 "positive regulation of smooth muscle cell migration"
evidence=IMP] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISO]
[GO:0030295 "protein kinase activator activity" evidence=ISO]
[GO:0030324 "lung development" evidence=ISO] [GO:0030335 "positive
regulation of cell migration" evidence=IDA] [GO:0031175 "neuron
projection development" evidence=IGI] [GO:0031532 "actin cytoskeleton
reorganization" evidence=IMP] [GO:0032392 "DNA geometric change"
evidence=IDA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEP] [GO:0032868 "response to insulin stimulus"
evidence=IEP] [GO:0033034 "positive regulation of myeloid cell
apoptotic process" evidence=IDA] [GO:0033151 "V(D)J recombination"
evidence=ISO] [GO:0034341 "response to interferon-gamma"
evidence=IMP] [GO:0042277 "peptide binding" evidence=IDA] [GO:0042493
"response to drug" evidence=IEP] [GO:0043005 "neuron projection"
evidence=ISO] [GO:0043065 "positive regulation of apoptotic process"
evidence=ISO;IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=ISO]
[GO:0043388 "positive regulation of DNA binding" evidence=ISO]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=ISO] [GO:0045663 "positive regulation of myoblast
differentiation" evidence=IMP] [GO:0045819 "positive regulation of
glycogen catabolic process" evidence=ISO] [GO:0045931 "positive
regulation of mitotic cell cycle" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046983 "protein dimerization activity"
evidence=IDA] [GO:0050727 "regulation of inflammatory response"
evidence=IDA] [GO:0050786 "RAGE receptor binding" evidence=IMP;IPI]
[GO:0050831 "male-specific defense response to bacterium"
evidence=IDA] [GO:0050930 "induction of positive chemotaxis"
evidence=IDA] [GO:0051384 "response to glucocorticoid stimulus"
evidence=ISO] [GO:0051450 "myoblast proliferation" evidence=IMP]
[GO:0051861 "glycolipid binding" evidence=IDA] [GO:0070491
"repressing transcription factor binding" evidence=ISO] [GO:0071347
"cellular response to interleukin-1" evidence=IEP] [GO:0017053
"transcriptional repressor complex" evidence=ISO] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:2802
GO:GO:0005634 GO:GO:0005737 GO:GO:0005694 GO:GO:0005615 GO:GO:0010976
GO:GO:0042493 GO:GO:0045931 GO:GO:0007623 GO:GO:0009749 GO:GO:0032496
GO:GO:0008201 GO:GO:0009408 GO:GO:0006935 GO:GO:0032868 GO:GO:0046983
eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0031532 GO:GO:0050727
GO:GO:0042277 GO:GO:0003690 GO:GO:0003697 GO:GO:0000902 GO:GO:0033034
GO:GO:0005125 GO:GO:0008134 GO:GO:0031175 GO:GO:0071347 GO:GO:0050930
GO:GO:0008156 GO:GO:0034341 GO:GO:0002053 GO:GO:0014911 GO:GO:0045663
GO:GO:0008097 GO:GO:0003681 GO:GO:0051861 Pfam:PF09011 GO:GO:0051450
OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802 CTD:3146
HOVERGEN:HBG009000 GO:GO:0050786 EMBL:M64986 EMBL:Y00463
EMBL:AF275734 EMBL:BC061779 EMBL:BC081839 EMBL:BC088402
IPI:IPI00555214 PIR:A41175 RefSeq:NP_037095.1 UniGene:Rn.144565
UniGene:Rn.15185 UniGene:Rn.4121 PDB:1AAB PDB:1CKT PDB:1HME PDB:1HMF
PDB:2GZK PDBsum:1AAB PDBsum:1CKT PDBsum:1HME PDBsum:1HMF PDBsum:2GZK
ProteinModelPortal:P63159 SMR:P63159 STRING:P63159 PhosphoSite:P63159
PRIDE:P63159 GeneID:25459 KEGG:rno:25459 InParanoid:P63159
EvolutionaryTrace:P63159 NextBio:606729 ArrayExpress:P63159
Genevestigator:P63159 GermOnline:ENSRNOG00000030351 GO:GO:0000402
GO:GO:0000401 GO:GO:0032392 GO:GO:0050831 Uniprot:P63159
Length = 215
Score = 146 (56.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>UNIPROTKB|O15347 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0003690 "double-stranded DNA binding"
evidence=ISS] [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=TAS]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0007275 GO:GO:0005634 GO:GO:0005694 GO:GO:0008301
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0006310 GO:GO:0003690 Pfam:PF09011 HOGENOM:HOG000197861
HOVERGEN:HBG009000 OrthoDB:EOG4TTGK2 eggNOG:NOG320947 CTD:3149
KO:K11296 OMA:DNEKQPY EMBL:Y10043 EMBL:AF003626 EMBL:BC070482
IPI:IPI00217477 RefSeq:NP_005333.2 UniGene:Hs.19114 PDB:2EQZ
PDB:2YQI PDBsum:2EQZ PDBsum:2YQI ProteinModelPortal:O15347
SMR:O15347 IntAct:O15347 STRING:O15347 PhosphoSite:O15347
PaxDb:O15347 PeptideAtlas:O15347 PRIDE:O15347 DNASU:3149
Ensembl:ENST00000325307 Ensembl:ENST00000448905 GeneID:3149
KEGG:hsa:3149 UCSC:uc004fep.3 GeneCards:GC0XP150148 HGNC:HGNC:5004
MIM:300193 neXtProt:NX_O15347 PharmGKB:PA35092 InParanoid:O15347
PhylomeDB:O15347 EvolutionaryTrace:O15347 GenomeRNAi:3149
NextBio:12480 ArrayExpress:O15347 Bgee:O15347 CleanEx:HS_HMGB3
Genevestigator:O15347 GermOnline:ENSG00000029993 Uniprot:O15347
Length = 200
Score = 142 (55.0 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P S + ++ ++ R KIK NPGIS ++AKK GE+W ++ EK Y K K KE Y +
Sbjct: 96 PPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEK 155
Query: 617 ALKAYK 622
+ YK
Sbjct: 156 DVADYK 161
Score = 133 (51.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNPGI--SFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ KK NP + +F E +KK E WKT+S KEK+++DE K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKDY 78
>UNIPROTKB|Q5T7C4 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOVERGEN:HBG009000 EMBL:AL353648 UniGene:Hs.434102
UniGene:Hs.593339 UniGene:Hs.596078 UniGene:Hs.741195
HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681 IPI:IPI00644653
SMR:Q5T7C4 Ensembl:ENST00000326004 Ensembl:ENST00000399489
UCSC:uc001usv.3 Uniprot:Q5T7C4
Length = 158
Score = 134 (52.2 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 23/60 (38%), Positives = 40/60 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 123 (48.4 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>CGD|CAF0007020 [details] [associations]
symbol:NHP6A species:5476 "Candida albicans" [GO:0003677 "DNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IEA] [GO:0070898 "RNA polymerase III transcriptional
preinitiation complex assembly" evidence=IEA] [GO:0051123 "RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0008301 "DNA binding, bending" evidence=IEA] InterPro:IPR009071
CGD:CAF0007020 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AACQ01000005 EMBL:AACQ01000006 EMBL:AF196333
ProteinModelPortal:Q9UVL1 SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 134 (52.2 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 558 MSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEA 617
+SAYM + N+ R+ ++ +NPGISF ++ K GE WK ++S++K Y+ K K+ Y +
Sbjct: 23 LSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKE 82
Query: 618 LKAY 621
Y
Sbjct: 83 KAEY 86
>UNIPROTKB|Q9UVL1 [details] [associations]
symbol:NHP6 "Non-histone chromosomal protein 6"
species:237561 "Candida albicans SC5314" [GO:0003677 "DNA binding"
evidence=IDA] InterPro:IPR009071 CGD:CAF0007020 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AACQ01000005
EMBL:AACQ01000006 EMBL:AF196333 ProteinModelPortal:Q9UVL1
SMR:Q9UVL1 STRING:Q9UVL1 Uniprot:Q9UVL1
Length = 92
Score = 134 (52.2 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 558 MSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEA 617
+SAYM + N+ R+ ++ +NPGISF ++ K GE WK ++S++K Y+ K K+ Y +
Sbjct: 23 LSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKE 82
Query: 618 LKAY 621
Y
Sbjct: 83 KAEY 86
>UNIPROTKB|P12682 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9823
"Sus scrofa" [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IDA] [GO:0017055 "negative regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=ISS]
[GO:0000793 "condensed chromosome" evidence=ISS] [GO:0006288
"base-excision repair, DNA ligation" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0000793
Pfam:PF09011 OrthoDB:EOG4KWJV1 HOGENOM:HOG000197861 KO:K10802
GO:GO:0017055 CTD:3146 HOVERGEN:HBG009000 GO:GO:0006288 EMBL:M21683
PIR:A28897 RefSeq:NP_001004034.1 UniGene:Ssc.22696
ProteinModelPortal:P12682 SMR:P12682 STRING:P12682 PRIDE:P12682
GeneID:445521 KEGG:ssc:445521 Uniprot:P12682
Length = 215
Score = 145 (56.1 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>UNIPROTKB|E9PES6 [details] [associations]
symbol:HMGB3 "High mobility group protein B3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 EMBL:AF003626 HGNC:HGNC:5004 IPI:IPI00411540
ProteinModelPortal:E9PES6 SMR:E9PES6 Ensembl:ENST00000430118
ArrayExpress:E9PES6 Bgee:E9PES6 Uniprot:E9PES6
Length = 153
Score = 133 (51.9 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDY 614
P S + ++ ++ R KIK NPGIS ++AKK GE+W ++ EK Y K K KE Y
Sbjct: 96 PPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKY 153
Score = 133 (51.9 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNPGI--SFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ KK NP + +F E +KK E WKT+S KEK+++DE K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKDY 78
>UNIPROTKB|E1BMK2 [details] [associations]
symbol:E1BMK2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005737
GO:GO:0005615 GO:GO:0003677 GO:GO:0030324 GO:GO:0045944
GO:GO:0051384 GO:GO:0043005 GO:GO:0045860 GO:GO:0030295
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0045819 GO:GO:0001654 Pfam:PF09011 GO:GO:0045639
GeneTree:ENSGT00560000076717 GO:GO:0010858 GO:GO:2000426
EMBL:DAAA02042275 IPI:IPI00688378 Ensembl:ENSBTAT00000019791
OMA:EXDIAAY Uniprot:E1BMK2
Length = 215
Score = 143 (55.4 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W + +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAVDDKQPYEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDE--KVNKAKED 613
MS+Y + RE+ K +P ++F+E +KK E WKT+S+KEK ++++ KV+KA+
Sbjct: 13 MSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKVDKAR-- 70
Query: 614 YNEALKAY 621
Y +K Y
Sbjct: 71 YEREMKTY 78
>SGD|S000006256 [details] [associations]
symbol:NHP6A "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0032301 "MutSalpha complex" evidence=IDA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0070898 "RNA polymerase
III transcriptional preinitiation complex assembly"
evidence=IGI;IDA] [GO:0006338 "chromatin remodeling" evidence=IGI]
[GO:0034724 "DNA replication-independent nucleosome organization"
evidence=IDA] [GO:0051123 "RNA polymerase II transcriptional
preinitiation complex assembly" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0008301 "DNA binding, bending"
evidence=IDA] [GO:0031491 "nucleosome binding" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IC] InterPro:IPR009071 SGD:S000006256 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0043565
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
EMBL:Z71255 EMBL:BK006949 GO:GO:0031491 EMBL:Z49219
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861 GO:GO:0051123
EMBL:M95912 EMBL:X15317 EMBL:AY693230 PIR:A35072 RefSeq:NP_015377.1
PDB:1CG7 PDB:1J5N PDB:1LWM PDBsum:1CG7 PDBsum:1J5N PDBsum:1LWM
DisProt:DP00432 ProteinModelPortal:P11632 SMR:P11632 IntAct:P11632
MINT:MINT-2785986 STRING:P11632 PaxDb:P11632 PeptideAtlas:P11632
EnsemblFungi:YPR052C GeneID:856165 KEGG:sce:YPR052C CYGD:YPR052c
OMA:FFANDNR OrthoDB:EOG4S7P0P EvolutionaryTrace:P11632
NextBio:981313 Genevestigator:P11632 GermOnline:YPR052C
GO:GO:0034724 GO:GO:0070898 Uniprot:P11632
Length = 93
Score = 130 (50.8 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEA 617
+SAYM + N+ R+ ++ +NP I+F ++ KK GE WK ++ +EK Y+ K K+ Y
Sbjct: 25 LSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESE 84
Query: 618 LKAY 621
+ Y
Sbjct: 85 KELY 88
>UNIPROTKB|E1BIF8 [details] [associations]
symbol:E1BIF8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02073284
IPI:IPI00728960 Ensembl:ENSBTAT00000006714 OMA:RAISEMW
Uniprot:E1BIF8
Length = 194
Score = 122 (48.0 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P S + ++F++ +IK NPGIS ++AKK GE+W +S +K Y K K K+ Y +
Sbjct: 93 PPSGFFLFFSEFCSEIKSTNPGISIGDVAKKLGEMWNNLSDSKKQLYVNKDAKLKK-YEK 151
Query: 617 ALKAYK 622
+ YK
Sbjct: 152 DVADYK 157
Score = 119 (46.9 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 558 MSAYMMWFNDMREKIKKD-NPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
MSA+ + R+K KK ++F E +KK E WKT+S KEK+ +DE K YN+
Sbjct: 13 MSAHAFFVQMCRKKHKKTPKVPVNFAEFSKKCSERWKTMSGKEKSTFDEMAKADKVHYNQ 72
Query: 617 ALKAY 621
+K Y
Sbjct: 73 EMKDY 77
Score = 57 (25.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 261 DPPIKQGQTRYH-FLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGP---TYEVMA 316
DP +G+ H F + + ++P + E +K + K +SG T++ MA
Sbjct: 5 DPEKPKGKMSAHAFFVQMCRKKHKKTPKVPVNFAEFSKKCSERW-KTMSGKEKSTFDEMA 63
Query: 317 KIMKVIVNRKITVPGSFRG 335
K KV N+++ GS +G
Sbjct: 64 KADKVHYNQEMKDYGSAKG 82
>POMBASE|SPAC57A10.09c [details] [associations]
symbol:nhp6 "High-mobility group non-histone chromatin
protein (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] InterPro:IPR009071
PomBase:SPAC57A10.09c Pfam:PF00505 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0033554 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0006351 GO:GO:0006338 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0000790 GO:GO:0006334 GO:GO:0006359 HOGENOM:HOG000197861
OMA:LANPNNK OrthoDB:EOG4S7P0P PIR:T38936 RefSeq:NP_593314.1
ProteinModelPortal:P87057 STRING:P87057
EnsemblFungi:SPAC57A10.09c.1 GeneID:2542878 KEGG:spo:SPAC57A10.09c
NextBio:20803918 Uniprot:P87057
Length = 108
Score = 128 (50.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEA 617
MSA+M + + REK+K DNP +F ++ G+ WK ++S E+ Y+EK + KE Y
Sbjct: 20 MSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKARQDKERYERE 79
Query: 618 LKAY 621
K Y
Sbjct: 80 RKEY 83
>UNIPROTKB|J9P699 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
EMBL:AAEX03014229 EMBL:AAEX03014230 Ensembl:ENSCAFT00000046727
Uniprot:J9P699
Length = 196
Score = 134 (52.2 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 23/60 (38%), Positives = 40/60 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 157
Score = 123 (48.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>UNIPROTKB|Q5T7C6 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 EMBL:AL138681
IPI:IPI00645948 SMR:Q5T7C6 MINT:MINT-1373108
Ensembl:ENST00000426225 Uniprot:Q5T7C6
Length = 162
Score = 123 (48.4 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
Score = 111 (44.1 bits), Expect = 0.00018, P = 0.00018
Identities = 20/51 (39%), Positives = 35/51 (68%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKV 607
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y EK+
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY-EKI 147
>UNIPROTKB|D4A2L7 [details] [associations]
symbol:D4A2L7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00948102
Ensembl:ENSRNOT00000030194 ArrayExpress:D4A2L7 Uniprot:D4A2L7
Length = 135
Score = 123 (48.4 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
Score = 110 (43.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 573 KKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622
K ++PG+S ++ KK GE+W ++ +K Y++K K KE Y + + AY+
Sbjct: 82 KGEHPGLSIGDVVKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 131
>UNIPROTKB|D6R9A6 [details] [associations]
symbol:HMGB2 "High mobility group protein B2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0007289 "spermatid nucleus
differentiation" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0048545
"response to steroid hormone stimulus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0045944 GO:GO:0048545
GO:GO:0008584 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007289 GO:GO:0043388 Pfam:PF09011
HOGENOM:HOG000197861 HGNC:HGNC:5000 ChiTaRS:HMGB2 EMBL:AC097534
IPI:IPI00967671 ProteinModelPortal:D6R9A6 SMR:D6R9A6
Ensembl:ENST00000506267 ArrayExpress:D6R9A6 Bgee:D6R9A6
Uniprot:D6R9A6
Length = 134
Score = 123 (48.4 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F E +KK E WKT+S+KEK+++++ K Y+
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYD 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKNY 78
>UNIPROTKB|Q5T7C0 [details] [associations]
symbol:HMGB1 "High mobility group protein B1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0001654
"eye development" evidence=IEA] [GO:0005125 "cytokine activity"
evidence=IEA] [GO:0005615 "extracellular space" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010858 "calcium-dependent protein kinase
regulator activity" evidence=IEA] [GO:0030295 "protein kinase
activator activity" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0043005 "neuron projection" evidence=IEA]
[GO:0045639 "positive regulation of myeloid cell differentiation"
evidence=IEA] [GO:0045819 "positive regulation of glycogen
catabolic process" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051384 "response to glucocorticoid stimulus" evidence=IEA]
[GO:2000426 "negative regulation of apoptotic cell clearance"
evidence=IEA] InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353
GO:GO:0005634 GO:GO:0005737 GO:GO:0005615 GO:GO:0003677
GO:GO:0030324 GO:GO:0045944 GO:GO:0051384 GO:GO:0043005
GO:GO:0045860 GO:GO:0030295 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0045819
GO:GO:0001654 Pfam:PF09011 GO:GO:0045639 EMBL:AL353648
UniGene:Hs.434102 UniGene:Hs.593339 UniGene:Hs.596078
UniGene:Hs.741195 HGNC:HGNC:4983 ChiTaRS:HMGB1 GO:GO:0010858
GO:GO:2000426 EMBL:AL138681 IPI:IPI00643746 SMR:Q5T7C0
Ensembl:ENST00000398908 Uniprot:Q5T7C0
Length = 97
Score = 123 (48.4 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>RGD|1587112 [details] [associations]
symbol:Hmg1l1 "high-mobility group (nonhistone chromosomal)
protein 1-like 1" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 RGD:1587112
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00564933 RefSeq:XP_003748829.1
RefSeq:XP_003753270.1 Ensembl:ENSRNOT00000047765 GeneID:100909581
KEGG:rno:100909581 OMA:KEYHSAR Uniprot:D3ZL49
Length = 215
Score = 136 (52.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y + K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWTNTAADDKQPYGKMAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK + ++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKCEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>UNIPROTKB|P0C6E5 [details] [associations]
symbol:P0C6E5 "Putative high mobility group protein B3-like
protein" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0003677 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC067852 Pfam:PF09011
IPI:IPI00888935 ProteinModelPortal:P0C6E5 SMR:P0C6E5 STRING:P0C6E5
PhosphoSite:P0C6E5 DMDM:205539816 PaxDb:P0C6E5 PRIDE:P0C6E5
neXtProt:NX_P0C6E5 InParanoid:P0C6E5 PhylomeDB:P0C6E5
Genevestigator:P0C6E5 Uniprot:P0C6E5
Length = 187
Score = 131 (51.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNPG--ISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ KK NP I+F E +KK E WKT+S KEK++++E K Y+
Sbjct: 13 MSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYD 72
Query: 616 EALKAY 621
+ +K Y
Sbjct: 73 QEIKDY 78
Score = 126 (49.4 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P S + ++ ++ K K NPGI ++AKK GE+WK ++ EK Y + K KE Y +
Sbjct: 95 PPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKNLNDSEKQPYITQAAKLKEKYEK 154
Query: 617 ALKAYK 622
+ YK
Sbjct: 155 DVAVYK 160
>RGD|1563668 [details] [associations]
symbol:RGD1563668 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
REFSEQ:XM_001074778 Ncbi:XP_001074778
Length = 211
Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++ KK GE+W ++ +K Y++ K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVVKKLGEMWTNTAADDKQPYEKMAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>ZFIN|ZDB-GENE-030131-8480 [details] [associations]
symbol:hmgb1b "high-mobility group box 1b"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-030131-8480 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 GeneTree:ENSGT00560000076717
HOVERGEN:HBG009000 eggNOG:NOG320947 EMBL:AL929092 EMBL:BC146744
IPI:IPI00854267 UniGene:Dr.47534 SMR:A6H8T4
Ensembl:ENSDART00000108983 NextBio:20932104 Uniprot:A6H8T4
Length = 165
Score = 121 (47.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ + K Y
Sbjct: 12 MSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKQDKVRYE 71
Query: 616 EALKAY 621
+K Y
Sbjct: 72 REMKNY 77
Score = 116 (45.9 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 573 KKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622
K +NPG+S +IAKK GE+W + S++ K Y++K K KE Y++ + Y+
Sbjct: 81 KGENPGLSIGDIAKKLGEMWNSSSAEVKQPYEKKAAKLKEKYDKDIALYR 130
Score = 40 (19.1 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 404 FSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSS 444
+ ++ +E GK D ++ K+R + K P E+ G S
Sbjct: 48 WKTMSAKEKGKFEDMAKQDKVRYEREMKNYIPPKGENPGLS 88
>UNIPROTKB|J3QR61 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000580654
Uniprot:J3QR61
Length = 153
Score = 121 (47.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+ YM + + +++K NP + EI K G +W+ ++ +EK EY + K +YNE
Sbjct: 51 PLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNE 110
Query: 617 ALKAY 621
++KAY
Sbjct: 111 SMKAY 115
>SGD|S000002157 [details] [associations]
symbol:NHP6B "High-mobility group (HMG) protein, binds to and
remodels nucleosomes" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI] [GO:0070898 "RNA polymerase III
transcriptional preinitiation complex assembly" evidence=IGI;IDA]
[GO:0008301 "DNA binding, bending" evidence=IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=ISS] InterPro:IPR009071
SGD:S000002157 Pfam:PF00505 GO:GO:0005634 GO:GO:0005694
GO:GO:0006355 GO:GO:0043565 GO:GO:0006281 EMBL:BK006936
GO:GO:0006338 eggNOG:COG5648 GO:GO:0008301 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006366
EMBL:X78993 GO:GO:0031491 GeneTree:ENSGT00560000076898
HOGENOM:HOG000197861 OMA:LANPNNK OrthoDB:EOG4S7P0P GO:GO:0070898
EMBL:X15318 EMBL:Z35957 EMBL:Z35959 EMBL:AY558566 EMBL:EF123125
PIR:S78076 RefSeq:NP_009647.2 ProteinModelPortal:P11633 SMR:P11633
DIP:DIP-6748N IntAct:P11633 MINT:MINT-615533 STRING:P11633
PaxDb:P11633 PeptideAtlas:P11633 EnsemblFungi:YBR089C-A
GeneID:852386 KEGG:sce:YBR089C-A CYGD:YBR089c-a NextBio:971195
Genevestigator:P11633 GermOnline:YBR089C-A Uniprot:P11633
Length = 99
Score = 121 (47.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 20/64 (31%), Positives = 39/64 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEA 617
+SAYM + N+ R+ ++ +NP ++F ++ + GE WK ++++EK Y+ K K+ Y
Sbjct: 31 LSAYMFFANENRDIVRSENPDVTFGQVGRILGERWKALTAEEKQPYESKAQADKKRYESE 90
Query: 618 LKAY 621
+ Y
Sbjct: 91 KELY 94
>RGD|1560584 [details] [associations]
symbol:RGD1560584 "similar to High mobility group protein 1
(HMG-1)" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 OrthoDB:EOG4KWJV1
GeneTree:ENSGT00560000076717 IPI:IPI00559222
Ensembl:ENSRNOT00000049438 Uniprot:D3ZIU9
Length = 204
Score = 133 (51.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 24/66 (36%), Positives = 42/66 (63%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W + +K ++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWTNTAVDDKQPCEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 115 (45.5 bits), Expect = 0.00030, P = 0.00030
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 558 MSAYMMWFNDMREKIKKD--NPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS++ + RE+ KK N ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSHAFFVQTCREEHKKKHLNASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>UNIPROTKB|C9JQA7 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968 IPI:IPI00878211
ProteinModelPortal:C9JQA7 SMR:C9JQA7 STRING:C9JQA7
Ensembl:ENST00000453933 ArrayExpress:C9JQA7 Bgee:C9JQA7
Uniprot:C9JQA7
Length = 142
Score = 119 (46.9 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P++ Y+ + N+ RE+I+ +P + F EI K G W + EK Y ++ + K+ Y +
Sbjct: 73 PVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMK 132
Query: 617 ALKAYKE 623
L+AY++
Sbjct: 133 ELRAYQQ 139
>RGD|1589528 [details] [associations]
symbol:LOC679344 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001054795 Ncbi:XP_001054795
Length = 215
Score = 132 (51.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ KIK ++PG+S ++AKK GE+W ++ +K ++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>RGD|1592627 [details] [associations]
symbol:LOC685520 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_003749913 Ncbi:XP_003749961
Length = 215
Score = 132 (51.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ KIK ++PG+S ++AKK GE+W ++ +K ++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 123 (48.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>UNIPROTKB|B2RPK0 [details] [associations]
symbol:HMGB1P1 "Putative high mobility group protein
B1-like 1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0005694 GO:GO:0003677
eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 EMBL:AL160176 UniGene:Hs.131543
EMBL:BC137482 EMBL:BC137483 IPI:IPI00022796
ProteinModelPortal:B2RPK0 SMR:B2RPK0 STRING:B2RPK0 PaxDb:B2RPK0
PRIDE:B2RPK0 GeneCards:GC20M056062 HGNC:HGNC:4993
neXtProt:NX_B2RPK0 InParanoid:B2RPK0 OrthoDB:EOG4KWJV1
PhylomeDB:B2RPK0 NextBio:39267 Genevestigator:B2RPK0 Uniprot:B2RPK0
Length = 211
Score = 130 (50.8 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA+ ++ ++ KIK ++PG+S ++AKK GE+W ++ +K ++K K KE Y +
Sbjct: 98 PPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPGEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYQ 163
Score = 112 (44.5 bits), Expect = 0.00077, P = 0.00077
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 558 MSAYMMWFNDMREKIKK--DNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK + ++F+E + K E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMAKADKTHYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 RQMKTY 78
>TAIR|locus:2136103 [details] [associations]
symbol:3xHMG-box1 "3xHigh Mobility Group-box1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
EMBL:AL161531 GO:GO:0003677 GO:GO:0003700 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AF080120 EMBL:AL049876 HSSP:P07155 EMBL:AY133687 EMBL:AJ630485
EMBL:AY568657 IPI:IPI00533286 PIR:T01926 PIR:T08187
RefSeq:NP_192846.1 UniGene:At.33587 ProteinModelPortal:Q9T012
SMR:Q9T012 EnsemblPlants:AT4G11080.1 GeneID:826709
KEGG:ath:AT4G11080 TAIR:At4g11080 HOGENOM:HOG000238964
InParanoid:Q9T012 KO:K09273 OMA:CKDQWNE PhylomeDB:Q9T012
ProtClustDB:CLSN2686000 Genevestigator:Q9T012 Uniprot:Q9T012
Length = 446
Score = 138 (53.6 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY+++ N+ R +K +N + E+AK GE WK +S ++KA YD+ K KE Y +
Sbjct: 249 PISAYLIYANERRAALKGENKSV--IEVAKMAGEEWKNLSEEKKAPYDQMAKKNKEIYLQ 306
Query: 617 ALKAYK 622
++ YK
Sbjct: 307 EMEGYK 312
Score = 119 (46.9 bits), Expect = 0.00066, P = 0.00066
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P + Y++W D ++KK NP F E + G WK +S++EK Y+EK KE Y +
Sbjct: 132 PSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEKYQADKEAYLQ 191
Query: 617 ALKAYK 622
+ K
Sbjct: 192 VITKEK 197
>UNIPROTKB|J3KT85 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000577721
Uniprot:J3KT85
Length = 101
Score = 114 (45.2 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 561 YMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKA 620
YM + + +++K NP + EI K G +W+ ++ +EK EY + K +YNE++KA
Sbjct: 3 YMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKA 62
Query: 621 Y 621
Y
Sbjct: 63 Y 63
>RGD|3759 [details] [associations]
symbol:Sry "sex determining region Y" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003705 "RNA polymerase II distal enhancer
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0005516 "calmodulin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007530 "sex determination" evidence=ISO]
[GO:0007548 "sex differentiation" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008301 "DNA
binding, bending" evidence=ISO] [GO:0008584 "male gonad development"
evidence=ISO] [GO:0010629 "negative regulation of gene expression"
evidence=ISO] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IPI] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0030238 "male sex determination" evidence=ISO;IEP]
[GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=IMP] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA polymerase
II promoter" evidence=IDA] [GO:2000020 "positive regulation of male
gonad development" evidence=ISO] InterPro:IPR009071 Pfam:PF00505
RGD:3759 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0016607
GO:GO:0043565 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007548
GO:GO:0030238 HOVERGEN:HBG008712 InterPro:IPR027151
PANTHER:PTHR10270:SF84 EMBL:X89730 EMBL:AJ222688 EMBL:Z26907
IPI:IPI00551785 PIR:S58088 ProteinModelPortal:P36394 SMR:P36394
PRIDE:P36394 Genevestigator:P36394 Uniprot:P36394
Length = 121
Score = 114 (45.2 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PM+A+M+W R K+ + NP + +EI+K+ G WK+++ EK + ++ + K + E
Sbjct: 8 PMNAFMVWSRGERHKLAQQNPSMQNSEISKQLGYQWKSLTEAEKRPFFQEAQRLKTLHRE 67
Query: 617 ALKAYK 622
YK
Sbjct: 68 KYPNYK 73
>TAIR|locus:2128504 [details] [associations]
symbol:3xHMG-box2 "3xHigh Mobility Group-box2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IDA] [GO:0000226 "microtubule cytoskeleton
organization" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0006084 "acetyl-CoA metabolic process"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0042127 "regulation of
cell proliferation" evidence=RCA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 EMBL:AL161560 EMBL:AL035394 HSSP:P07155
HOGENOM:HOG000238964 KO:K09273 ProtClustDB:CLSN2686000
EMBL:AY074353 EMBL:AY096398 EMBL:AY125491 IPI:IPI00533790
PIR:T05612 RefSeq:NP_194111.1 UniGene:At.2572 UniGene:At.71059
ProteinModelPortal:Q9SUP7 SMR:Q9SUP7 STRING:Q9SUP7 PaxDb:Q9SUP7
PRIDE:Q9SUP7 EnsemblPlants:AT4G23800.1 GeneID:828480
KEGG:ath:AT4G23800 TAIR:At4g23800 eggNOG:NOG327891
InParanoid:Q9SUP7 OMA:FCNERRA PhylomeDB:Q9SUP7
Genevestigator:Q9SUP7 Uniprot:Q9SUP7
Length = 456
Score = 135 (52.6 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 25/66 (37%), Positives = 44/66 (66%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SA++++ N+ R ++++N + E+AK GE WK +S K+KA Y++ K KE Y +
Sbjct: 258 PVSAFLVYANERRAALREENKSV--VEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQ 315
Query: 617 ALKAYK 622
A++ YK
Sbjct: 316 AMEEYK 321
Score = 122 (48.0 bits), Expect = 0.00032, P = 0.00032
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P S+Y++W D ++KK+NP F E + G WK++S+++K Y+E+ KE Y +
Sbjct: 141 PSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEKEAYLQ 200
Query: 617 ALKAYK 622
+ K
Sbjct: 201 VIAKEK 206
>ZFIN|ZDB-GENE-050417-290 [details] [associations]
symbol:hmgb3b "high-mobility group box 3b"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
ZFIN:ZDB-GENE-050417-290 GO:GO:0005634 GO:GO:0003677 eggNOG:COG5648
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 HOGENOM:HOG000197861 HOVERGEN:HBG009000 KO:K11296
EMBL:BC093186 IPI:IPI00511002 RefSeq:NP_001017769.1
UniGene:Dr.75880 ProteinModelPortal:Q567G0 SMR:Q567G0 GeneID:550466
KEGG:dre:550466 CTD:550466 InParanoid:Q567G0 OrthoDB:EOG4TB4CM
NextBio:20879710 ArrayExpress:Q567G0 Uniprot:Q567G0
Length = 198
Score = 125 (49.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNPGIS--FTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MSAY + RE+ K NPG++ F+E +KK E WKT+S KEK ++++ + K Y+
Sbjct: 13 MSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSPKEKTKFEDLAKQDKARYD 72
Query: 616 EALKAY 621
+ + Y
Sbjct: 73 QEMMHY 78
>RGD|708449 [details] [associations]
symbol:Tox4 "TOX high mobility group box family member 4"
species:10116 "Rattus norvegicus" [GO:0000785 "chromatin"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0072357 "PTW/PP1
phosphatase complex" evidence=IEA;ISO;ISS] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR009071 Pfam:PF00505 RGD:708449
GO:GO:0005634 GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357
HOGENOM:HOG000230949 eggNOG:NOG284736 HOVERGEN:HBG051013
OrthoDB:EOG4JT05P EMBL:AF267197 IPI:IPI00201166 UniGene:Rn.22195
ProteinModelPortal:Q99PM1 SMR:Q99PM1 PhosphoSite:Q99PM1
PRIDE:Q99PM1 UCSC:RGD:708449 InParanoid:Q99PM1 ArrayExpress:Q99PM1
Genevestigator:Q99PM1 GermOnline:ENSRNOG00000012844 Uniprot:Q99PM1
Length = 619
Score = 138 (53.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F E++K +W ++ ++K Y K AK++Y +
Sbjct: 226 PVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLK 285
Query: 617 ALKAYKE 623
AL AYK+
Sbjct: 286 ALAAYKD 292
Score = 43 (20.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 481 NPDQAESDVAEEYDSNPTPTDSDEDSDASE 510
+P A SDV +D P+ S + S +++
Sbjct: 47 DPSLAVSDVVAHFDDLADPSSSQDGSFSAQ 76
>UNIPROTKB|F1M1H9 [details] [associations]
symbol:F1M1H9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00949462
Ensembl:ENSRNOT00000052187 Uniprot:F1M1H9
Length = 179
Score = 121 (47.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P A+ ++ ++ KIK ++PG+S ++AKK GE+W ++ +K ++K K KE Y +
Sbjct: 99 PPLAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPCEKKAAKLKEKYEK 158
Query: 617 ALKAYK 622
AY+
Sbjct: 159 DNAAYR 164
Score = 112 (44.5 bits), Expect = 0.00035, P = 0.00035
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 558 MSAYMMWF-NDMREKIKKDN--PGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDY 614
MS+Y +F RE+ KK + ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYYAFFVQTCREEHKKKHWDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY 72
Query: 615 NEALKAY 621
+K Y
Sbjct: 73 EREMKTY 79
>UNIPROTKB|B4DPY8 [details] [associations]
symbol:TOX4 "cDNA FLJ54372, highly similar to Epidermal
Langerhans cell protein LCP1" species:9606 "Homo sapiens"
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AL161747 EMBL:AE000658 HOVERGEN:HBG051013 UniGene:Hs.555910
HGNC:HGNC:20161 ChiTaRS:TOX4 EMBL:AK298555 IPI:IPI00879111
SMR:B4DPY8 STRING:B4DPY8 Ensembl:ENST00000448790 UCSC:uc010tlu.2
Uniprot:B4DPY8
Length = 598
Score = 138 (53.6 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F E++K +W ++ ++K Y K AK++Y +
Sbjct: 203 PVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLK 262
Query: 617 ALKAYKE 623
AL AYK+
Sbjct: 263 ALAAYKD 269
Score = 42 (19.8 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 481 NPDQAESDVAEEYDSNPTPTDSDEDSDASE 510
+P A SDV +D P+ S + S +++
Sbjct: 24 DPSLAVSDVVGHFDDLADPSSSQDGSFSAQ 53
>UNIPROTKB|Q0P5K4 [details] [associations]
symbol:TOX4 "TOX high mobility group box family member 4"
species:9913 "Bos taurus" [GO:0072357 "PTW/PP1 phosphatase complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00560000076898 GO:GO:0072357
HOGENOM:HOG000230949 eggNOG:NOG284736 EMBL:BC119929 IPI:IPI00689806
RefSeq:NP_001069175.1 UniGene:Bt.51979 ProteinModelPortal:Q0P5K4
SMR:Q0P5K4 Ensembl:ENSBTAT00000020149 GeneID:515314 KEGG:bta:515314
CTD:9878 HOVERGEN:HBG051013 InParanoid:Q0P5K4 OMA:PPTLKMQ
OrthoDB:EOG4JT05P NextBio:20871764 ArrayExpress:Q0P5K4
Uniprot:Q0P5K4
Length = 619
Score = 138 (53.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F E++K +W ++ ++K Y K AK++Y +
Sbjct: 226 PVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLK 285
Query: 617 ALKAYKE 623
AL AYK+
Sbjct: 286 ALAAYKD 292
Score = 42 (19.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 481 NPDQAESDVAEEYDSNPTPTDSDEDSDASE 510
+P A SDV +D P+ S + S +++
Sbjct: 47 DPSLAVSDVVGHFDDLADPSSSQDGSFSAQ 76
>MGI|MGI:1915389 [details] [associations]
symbol:Tox4 "TOX high mobility group box family member 4"
species:10090 "Mus musculus" [GO:0000785 "chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0072357 "PTW/PP1 phosphatase complex" evidence=ISO]
InterPro:IPR009071 MGI:MGI:1915389 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00560000076898
GO:GO:0072357 eggNOG:NOG284736 CTD:9878 HOVERGEN:HBG051013
OMA:PPTLKMQ OrthoDB:EOG4JT05P ChiTaRS:TOX4 EMBL:AF228408
EMBL:AK019980 EMBL:AK088144 EMBL:AK147023 EMBL:AK147834
EMBL:BC050091 IPI:IPI00121251 RefSeq:NP_075923.2 UniGene:Mm.246237
ProteinModelPortal:Q8BU11 SMR:Q8BU11 IntAct:Q8BU11
PhosphoSite:Q8BU11 PaxDb:Q8BU11 PRIDE:Q8BU11
Ensembl:ENSMUST00000022766 GeneID:268741 KEGG:mmu:268741
InParanoid:Q3UGN7 NextBio:392465 Bgee:Q8BU11 CleanEx:MM_TOX4
Genevestigator:Q8BU11 GermOnline:ENSMUSG00000016831 Uniprot:Q8BU11
Length = 619
Score = 138 (53.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F E++K +W ++ ++K Y K AK++Y +
Sbjct: 226 PVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLK 285
Query: 617 ALKAYKE 623
AL AYK+
Sbjct: 286 ALAAYKD 292
Score = 42 (19.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 481 NPDQAESDVAEEYDSNPTPTDSDEDSDASE 510
+P A SDV +D P+ S + S +++
Sbjct: 47 DPSLAVSDVVGHFDDLADPSSSQDGSFSAQ 76
>UNIPROTKB|I3LAV9 [details] [associations]
symbol:TOX4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000785 "chromatin"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0000785 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GeneTree:ENSGT00560000076898 GO:GO:0072357
OMA:PPTLKMQ EMBL:CU695044 RefSeq:XP_001929153.1 UniGene:Ssc.97365
Ensembl:ENSSSCT00000027379 GeneID:100152681 KEGG:ssc:100152681
Uniprot:I3LAV9
Length = 620
Score = 138 (53.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F E++K +W ++ ++K Y K AK++Y +
Sbjct: 226 PVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLK 285
Query: 617 ALKAYKE 623
AL AYK+
Sbjct: 286 ALAAYKD 292
Score = 42 (19.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 481 NPDQAESDVAEEYDSNPTPTDSDEDSDASE 510
+P A SDV +D P+ S + S +++
Sbjct: 47 DPSLAVSDVVGHFDDLADPSSSQDGSFSAQ 76
>UNIPROTKB|O94842 [details] [associations]
symbol:TOX4 "TOX high mobility group box family member 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000785 "chromatin"
evidence=IDA] [GO:0072357 "PTW/PP1 phosphatase complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 GO:GO:0000785 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357
HOGENOM:HOG000230949 eggNOG:NOG284736 CTD:9878 HOVERGEN:HBG051013
OMA:PPTLKMQ OrthoDB:EOG4JT05P EMBL:AB018280 EMBL:BC013689
IPI:IPI00006586 RefSeq:NP_055643.1 UniGene:Hs.555910
ProteinModelPortal:O94842 SMR:O94842 IntAct:O94842
MINT:MINT-1193640 STRING:O94842 PhosphoSite:O94842 PaxDb:O94842
PeptideAtlas:O94842 PRIDE:O94842 DNASU:9878 Ensembl:ENST00000262709
Ensembl:ENST00000405508 GeneID:9878 KEGG:hsa:9878 UCSC:uc001way.3
GeneCards:GC14P021944 HGNC:HGNC:20161 HPA:HPA017880 HPA:HPA027551
MIM:614032 neXtProt:NX_O94842 PharmGKB:PA162406753
InParanoid:O94842 PhylomeDB:O94842 ChiTaRS:TOX4 GenomeRNAi:9878
NextBio:37229 ArrayExpress:O94842 Bgee:O94842 CleanEx:HS_TOX4
Genevestigator:O94842 GermOnline:ENSG00000092203 Uniprot:O94842
Length = 621
Score = 138 (53.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F E++K +W ++ ++K Y K AK++Y +
Sbjct: 226 PVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLK 285
Query: 617 ALKAYKE 623
AL AYK+
Sbjct: 286 ALAAYKD 292
Score = 42 (19.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 481 NPDQAESDVAEEYDSNPTPTDSDEDSDASE 510
+P A SDV +D P+ S + S +++
Sbjct: 47 DPSLAVSDVVGHFDDLADPSSSQDGSFSAQ 76
>UNIPROTKB|Q5R6A9 [details] [associations]
symbol:TOX4 "TOX high mobility group box family member 4"
species:9601 "Pongo abelii" [GO:0072357 "PTW/PP1 phosphatase
complex" evidence=ISS] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0072357 HOGENOM:HOG000230949
HSSP:Q66JW3 CTD:9878 HOVERGEN:HBG051013 OrthoDB:EOG4JT05P
EMBL:CR860582 EMBL:CR861113 RefSeq:NP_001126876.1
RefSeq:NP_001128875.1 UniGene:Pab.18544 UniGene:Pab.19683
GeneID:100173889 GeneID:100189804 KEGG:pon:100173889
KEGG:pon:100189804 Uniprot:Q5R6A9
Length = 621
Score = 138 (53.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F E++K +W ++ ++K Y K AK++Y +
Sbjct: 226 PVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLK 285
Query: 617 ALKAYKE 623
AL AYK+
Sbjct: 286 ALAAYKD 292
Score = 42 (19.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 481 NPDQAESDVAEEYDSNPTPTDSDEDSDASE 510
+P A SDV +D P+ S + S +++
Sbjct: 47 DPSLAVSDVVGHFDDLADPSSSQDGSFSAQ 76
>RGD|1588759 [details] [associations]
symbol:Hmgb1-ps3 "high mobility group box 1, pseudogene 3"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:1588759 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
OrthoDB:EOG4KWJV1 GeneTree:ENSGT00560000076717 IPI:IPI00366734
Ensembl:ENSRNOT00000046626 Uniprot:D3ZGW6
Length = 212
Score = 124 (48.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P A+ ++ ++ R KIK ++PG+S ++ KK GE+W + +K ++K K KE Y +
Sbjct: 98 PPLAFFLFCSEYRPKIKGEHPGLSIGDVVKKLGEMWNNTAVDDKQPCEKKAAKLKEKYEK 157
Query: 617 ALKAYK 622
+ AY+
Sbjct: 158 DIAAYR 163
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + +E+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCQEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>RGD|2319002 [details] [associations]
symbol:LOC100365478 "high-mobility group box 1-like"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505
RGD:2319002 GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
IPI:IPI00958625 Ensembl:ENSRNOT00000062071 Uniprot:F1LWU2
Length = 186
Score = 121 (47.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA++ + +D R KIK +PG+S ++AK GE+W + +K ++K K KE Y +
Sbjct: 97 PPSAFL-FCSDHRPKIKGKHPGLSIGDVAKNLGEMWNSTVMDDKQPSEKKATKLKETYEK 155
Query: 617 ALKAYK 622
+ AY+
Sbjct: 156 DIAAYR 161
>RGD|735184 [details] [associations]
symbol:Tox2 "TOX high mobility group box family member 2"
species:10116 "Rattus norvegicus" [GO:0001085 "RNA polymerase II
transcription factor binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008585 "female gonad development" evidence=IEP] [GO:0034698
"response to gonadotropin stimulus" evidence=IEP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] InterPro:IPR009071 Pfam:PF00505 RGD:735184
GO:GO:0005634 GO:GO:0008585 GO:GO:0034698 GO:GO:0003677
GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 CTD:84969 eggNOG:NOG291143
HOGENOM:HOG000230949 HOVERGEN:HBG051183 EMBL:AB096685
IPI:IPI00400737 RefSeq:NP_955424.2 UniGene:Rn.129021
ProteinModelPortal:Q76IQ7 SMR:Q76IQ7 PRIDE:Q76IQ7 GeneID:311615
KEGG:rno:311615 UCSC:RGD:735184 InParanoid:Q76IQ7 OrthoDB:EOG44J2JB
NextBio:663917 ArrayExpress:Q76IQ7 Genevestigator:Q76IQ7
GermOnline:ENSRNOG00000008146 Uniprot:Q76IQ7
Length = 473
Score = 131 (51.2 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F +++K +W ++ ++K Y K AK++Y +
Sbjct: 207 PVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTEAAKKEYLK 266
Query: 617 ALKAYK 622
AL AY+
Sbjct: 267 ALAAYR 272
Score = 45 (20.9 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 397 KSGVLHTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAY 453
KS SS ++EE F EK+ K + P K+ ++ +K AY
Sbjct: 155 KSATPSPSSSTQEEESDAHFKISGEKRPSTDPGKKAKNPKKKKKKDPNEPQKPVSAY 211
>UNIPROTKB|F1RXE6 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 GeneTree:ENSGT00390000003628
EMBL:CU856162 Ensembl:ENSSSCT00000019017 OMA:HANINAK Uniprot:F1RXE6
Length = 194
Score = 121 (47.7 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+ YM + + +++K NP + EI K G +W+ ++ +EK EY + K +YNE
Sbjct: 69 PLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNE 128
Query: 617 ALKAY 621
++KAY
Sbjct: 129 SMKAY 133
>UNIPROTKB|F1M607 [details] [associations]
symbol:F1M607 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00558117 Ensembl:ENSRNOT00000046997 Uniprot:F1M607
Length = 211
Score = 119 (46.9 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 559 SAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEAL 618
SA+ + ++ R KIK ++PG+S ++A+K GE+W ++ +K EK K KE Y + +
Sbjct: 96 SAFFLLCSEYRPKIKGEHPGLSIGDVARKLGEMWNNTAADDKQPC-EKAAKLKEKYEKDI 154
Query: 619 KAYK 622
AY+
Sbjct: 155 AAYR 158
Score = 41 (19.5 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 430 GKGE--KPNYKED----FGSSDDEKE-PDAYL 454
GKG+ KP K FG + EK+ PDA++
Sbjct: 2 GKGDPKKPRGKMSSYTFFGGEEHEKKHPDAFV 33
>RGD|2319567 [details] [associations]
symbol:LOC100361707 "Ac2-008-like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 RGD:2319567 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:AC128270
IPI:IPI00382302 Ensembl:ENSRNOT00000047163 ArrayExpress:F1LNG6
Uniprot:F1LNG6
Length = 219
Score = 123 (48.4 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 141 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 200
Query: 616 EALKAY 621
+K Y
Sbjct: 201 REMKTY 206
>UNIPROTKB|E1BKT2 [details] [associations]
symbol:TOX3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051219 "phosphoprotein binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0034056 "estrogen response element
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0043524 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
GeneTree:ENSGT00560000076898 CTD:27324 OMA:HSLIMRS
EMBL:DAAA02046427 EMBL:DAAA02046428 EMBL:DAAA02046429
EMBL:DAAA02046430 IPI:IPI00715207 RefSeq:XP_002694823.1
RefSeq:XP_885168.3 ProteinModelPortal:E1BKT2
Ensembl:ENSBTAT00000000539 GeneID:539135 KEGG:bta:539135
NextBio:20877802 Uniprot:E1BKT2
Length = 556
Score = 133 (51.9 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F E++K +W ++ ++K Y K AK++Y +
Sbjct: 258 PVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLK 317
Query: 617 ALKAYK 622
AL AY+
Sbjct: 318 ALAAYR 323
Score = 43 (20.2 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 397 KSGVLHTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAY 453
KS SSI +E+ + I EK+ + K + P K+ ++ +K AY
Sbjct: 206 KSATPSPSSSINEEDADETNRAIGEKRAAPDSGKKPKTPKKKKKKDPNEPQKPVSAY 262
Score = 37 (18.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 482 PDQAESDVAEEYDSNPTPTDSDEDSDASE 510
P + S A + + P+P+ S + DA E
Sbjct: 196 PHTSPSPPASK-SATPSPSSSINEEDADE 223
>UNIPROTKB|O15405 [details] [associations]
symbol:TOX3 "TOX high mobility group box family member 3"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0051219
"phosphoprotein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0034056 "estrogen
response element binding" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IDA] InterPro:IPR009071 PROSITE:PS00353
Pfam:PF00505 GO:GO:0005634 GO:GO:0006915 GO:GO:0045893
GO:GO:0042803 GO:GO:0043524 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0034056 HOGENOM:HOG000230949 HOVERGEN:HBG051183 EMBL:AK299202
EMBL:AC007490 EMBL:U80736 IPI:IPI00903025 IPI:IPI00929129
RefSeq:NP_001073899.2 RefSeq:NP_001139660.1 UniGene:Hs.460789
HSSP:Q66JW3 ProteinModelPortal:O15405 SMR:O15405 STRING:O15405
PhosphoSite:O15405 PaxDb:O15405 PRIDE:O15405 DNASU:27324
Ensembl:ENST00000219746 Ensembl:ENST00000407228 GeneID:27324
KEGG:hsa:27324 UCSC:uc002egw.2 CTD:27324 GeneCards:GC16M052471
H-InvDB:HIX0013031 HGNC:HGNC:11972 HPA:HPA040376 MIM:611416
neXtProt:NX_O15405 PharmGKB:PA162406752 eggNOG:NOG284736
OMA:HSLIMRS ChiTaRS:TOX3 GenomeRNAi:27324 NextBio:50340
ArrayExpress:O15405 Bgee:O15405 CleanEx:HS_TOX3
Genevestigator:O15405 Uniprot:O15405
Length = 576
Score = 133 (51.9 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F E++K +W ++ ++K Y K AK++Y +
Sbjct: 258 PVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLK 317
Query: 617 ALKAYK 622
AL AY+
Sbjct: 318 ALAAYR 323
Score = 43 (20.2 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 397 KSGVLHTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAY 453
KS SSI +E+ + I EK+ + K + P K+ ++ +K AY
Sbjct: 206 KSATPSPSSSINEEDADEANRAIGEKRAAPDSGKKPKTPKKKKKKDPNEPQKPVSAY 262
>RGD|1583212 [details] [associations]
symbol:LOC685091 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001062256 Ncbi:XP_001062256
Length = 203
Score = 121 (47.7 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SA++ + +D R KIK +PG+S ++AK GE+W + +K ++K K KE Y +
Sbjct: 105 PPSAFL-FCSDHRPKIKGKHPGLSIGDVAKNLGEMWNSTVMDDKQPSEKKATKLKETYEK 163
Query: 617 ALKAYK 622
+ AY+
Sbjct: 164 DIAAYR 169
>UNIPROTKB|F1REZ8 [details] [associations]
symbol:TOX3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051219 "phosphoprotein binding" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0034056 "estrogen response element
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893
GO:GO:0043524 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
GeneTree:ENSGT00560000076898 OMA:HSLIMRS EMBL:CU442721
EMBL:CU457410 Ensembl:ENSSSCT00000003136 Uniprot:F1REZ8
Length = 542
Score = 133 (51.9 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F E++K +W ++ ++K Y K AK++Y +
Sbjct: 229 PVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLK 288
Query: 617 ALKAYK 622
AL AY+
Sbjct: 289 ALAAYR 294
Score = 42 (19.8 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 397 KSGVLHTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAY 453
KS SSI +E+ + I EK+ + K + P K+ ++ +K AY
Sbjct: 177 KSATPSPSSSINEEDADESNRAIGEKRAAPDSGKKPKTPKKKKKKDPNEPQKPVSAY 233
>UNIPROTKB|G3XAC7 [details] [associations]
symbol:TOX2 "Chromosome 20 open reading frame 100, isoform
CRA_b" species:9606 "Homo sapiens" [GO:0001085 "RNA polymerase II
transcription factor binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008585 "female gonad development" evidence=IEA]
[GO:0034698 "response to gonadotropin stimulus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 EMBL:CH471077 GO:GO:0045944
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AL034419 EMBL:AL121587 EMBL:AL035089 EMBL:AL353797
UniGene:Hs.26608 GeneID:84969 KEGG:hsa:84969 CTD:84969
HGNC:HGNC:16095 GenomeRNAi:84969 NextBio:75504
RefSeq:NP_001092267.1 ProteinModelPortal:G3XAC7 SMR:G3XAC7
Ensembl:ENST00000341197 OMA:DHEASYH ArrayExpress:G3XAC7 Bgee:G3XAC7
Uniprot:G3XAC7
Length = 506
Score = 131 (51.2 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F +++K +W ++ ++K Y K AK++Y +
Sbjct: 249 PVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTEAAKKEYLK 308
Query: 617 ALKAYK 622
AL AY+
Sbjct: 309 ALAAYR 314
Score = 43 (20.2 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 15/57 (26%), Positives = 23/57 (40%)
Query: 397 KSGVLHTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAY 453
KS SS ++EE F EK+ K + P K+ ++ +K AY
Sbjct: 197 KSATPSPSSSTQEEESEVHFKISGEKRPSADPGKKAKNPKKKKKKDPNEPQKPVSAY 253
>UNIPROTKB|F1N1P2 [details] [associations]
symbol:F1N1P2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR017967
PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634 GO:GO:0003677
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Pfam:PF09011 GeneTree:ENSGT00560000076717 EMBL:DAAA02056400
IPI:IPI00904552 Ensembl:ENSBTAT00000020361 Uniprot:F1N1P2
Length = 199
Score = 120 (47.3 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 558 MSAYMMWFNDMREKIKKDNPGI--SFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
M AY + RE+ KK N + +F E +KK E WKT+S KEK+++DE K Y+
Sbjct: 13 MCAYAFFVQMCREEHKKKNSEVPVNFAEFSKKCSERWKTMSRKEKSKFDEMAKAYKMHYD 72
Query: 616 EALKAY 621
+ +K Y
Sbjct: 73 QEMKDY 78
Score = 111 (44.1 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 559 SAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEA 617
S +++ ++ KIK +PGIS ++AKK GE+W +S EK Y K K K+ +A
Sbjct: 97 SGCLLFCSEFHPKIKSTHPGISIRDVAKKLGEMWNNLSDSEKQPYINKAAKLKKYEKDA 155
Score = 47 (21.6 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 261 DPPIKQGQT-RYHFLTLLFNQD---ETSEMELPFSE--QELKEKYEGKLDKELSGPTYEV 314
DP +G+ Y F + ++ + SE+ + F+E ++ E+++ KE S ++
Sbjct: 5 DPKKPKGKMCAYAFFVQMCREEHKKKNSEVPVNFAEFSKKCSERWKTMSRKEKS--KFDE 62
Query: 315 MAKIMKVIVNRKITVPGSFRG 335
MAK K+ ++++ G RG
Sbjct: 63 MAKAYKMHYDQEMKDYGPARG 83
>RGD|1311529 [details] [associations]
symbol:Tox3 "TOX high mobility group box family member 3"
species:10116 "Rattus norvegicus" [GO:0003682 "chromatin binding"
evidence=ISO;ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0019722 "calcium-mediated signaling"
evidence=IDA] [GO:0034056 "estrogen response element binding"
evidence=ISO;ISS] [GO:0042803 "protein homodimerization activity"
evidence=ISO;ISS] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=ISO;ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO;IDA]
[GO:0051219 "phosphoprotein binding" evidence=ISO]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 RGD:1311529
GO:GO:0005634 GO:GO:0006915 GO:GO:0045893 GO:GO:0042803
GO:GO:0019722 GO:GO:0043524 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0034056 HOVERGEN:HBG051183 eggNOG:NOG284736 OrthoDB:EOG4K0QNS
EMBL:EU194254 IPI:IPI00371454 UniGene:Rn.41060
Genevestigator:B7SBD2 Uniprot:B7SBD2
Length = 577
Score = 133 (51.9 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F E++K +W ++ ++K Y K AK++Y +
Sbjct: 257 PVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLK 316
Query: 617 ALKAYK 622
AL AY+
Sbjct: 317 ALAAYR 322
Score = 42 (19.8 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 397 KSGVLHTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAY 453
KS SSI +E+ + + EK+ + K + P K+ ++ +K AY
Sbjct: 205 KSATPSPSSSINEEDADETNRAVGEKRTAPDSGKKPKTPKKKKKKDPNEPQKPVSAY 261
Score = 37 (18.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 482 PDQAESDVAEEYDSNPTPTDSDEDSDASE 510
P + S A + + P+P+ S + DA E
Sbjct: 195 PHTSPSPPASK-SATPSPSSSINEEDADE 222
>UNIPROTKB|Q8WW32 [details] [associations]
symbol:HMGB4 "High mobility group protein B4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0005694 GO:GO:0003677 EMBL:CH471059 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
EMBL:AL121980 HOGENOM:HOG000197861 HOVERGEN:HBG009000 CTD:127540
KO:K11297 OMA:RYQEEMM EMBL:DQ207367 EMBL:AK311985 EMBL:BC021180
IPI:IPI00815726 RefSeq:NP_660206.2 UniGene:Hs.568628
UniGene:Hs.667683 HSSP:P17741 ProteinModelPortal:Q8WW32 SMR:Q8WW32
PhosphoSite:Q8WW32 DMDM:74730920 PRIDE:Q8WW32 DNASU:127540
Ensembl:ENST00000519684 Ensembl:ENST00000522796 GeneID:127540
KEGG:hsa:127540 GeneCards:GC01P034326 HGNC:HGNC:24954 HPA:HPA035699
neXtProt:NX_Q8WW32 InParanoid:Q8WW32 PhylomeDB:Q8WW32 NextBio:82109
Bgee:Q8WW32 CleanEx:HS_HMGB4 Genevestigator:Q8WW32 Uniprot:Q8WW32
Length = 186
Score = 118 (46.6 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 20/67 (29%), Positives = 41/67 (61%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P S+++++ D ++K++NP S ++AK G++W T + EK Y+++V + Y E
Sbjct: 96 PPSSFLLFCQDHYAQLKRENPNWSVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFE 155
Query: 617 ALKAYKE 623
L+ Y++
Sbjct: 156 ELELYRK 162
>MGI|MGI:3039593 [details] [associations]
symbol:Tox3 "TOX high mobility group box family member 3"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0019722 "calcium-mediated signaling"
evidence=ISO] [GO:0034056 "estrogen response element binding"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0051219
"phosphoprotein binding" evidence=ISO] InterPro:IPR009071
PROSITE:PS00353 MGI:MGI:3039593 Pfam:PF00505 GO:GO:0005634
GO:GO:0006915 GO:GO:0045893 GO:GO:0042803 GO:GO:0043524
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0034056
GeneTree:ENSGT00560000076898 HOGENOM:HOG000230949
HOVERGEN:HBG051183 HSSP:Q66JW3 CTD:27324 eggNOG:NOG284736
OMA:HSLIMRS ChiTaRS:TOX3 EMBL:AK082602 EMBL:BC052044
IPI:IPI00330486 RefSeq:NP_766501.2 UniGene:Mm.302755
ProteinModelPortal:Q80W03 SMR:Q80W03 STRING:Q80W03
PhosphoSite:Q80W03 PaxDb:Q80W03 PRIDE:Q80W03
Ensembl:ENSMUST00000109621 GeneID:244579 KEGG:mmu:244579
UCSC:uc009msb.2 InParanoid:Q80W03 OrthoDB:EOG4K0QNS NextBio:386323
Bgee:Q80W03 CleanEx:MM_TOX3 Genevestigator:Q80W03 Uniprot:Q80W03
Length = 575
Score = 133 (51.9 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F E++K +W ++ ++K Y K AK++Y +
Sbjct: 257 PVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLK 316
Query: 617 ALKAYK 622
AL AY+
Sbjct: 317 ALAAYR 322
Score = 41 (19.5 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 397 KSGVLHTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAY 453
KS SSI +E+ I EK+ + K + P K+ ++ +K AY
Sbjct: 205 KSATPSPSSSINEEDADDANRAIGEKRTAPDSGKKPKTPKKKKKKDPNEPQKPVSAY 261
>UNIPROTKB|F1LZ54 [details] [associations]
symbol:F1LZ54 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00765905
Ensembl:ENSRNOT00000045990 Uniprot:F1LZ54
Length = 160
Score = 112 (44.5 bits), Expect = 0.00010, P = 0.00010
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
+++Y + +E+ KK +P ++F+E +KK E WKT+S+KEK ++++ K Y
Sbjct: 13 LNSYAFFVQAYQEEHKKKHPDSSVNFSEFSKKCSERWKTMSAKEKGKFEDVAKADKAHYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>UNIPROTKB|J3QKX6 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HGNC:HGNC:11109 EMBL:AC004585 EMBL:AC073508 Ensembl:ENST00000582955
Uniprot:J3QKX6
Length = 129
Score = 103 (41.3 bits), Expect = 0.00012, P = 0.00012
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+ YM + + +++K NP + EI K G +W+ ++ +EK EY + K +YNE
Sbjct: 69 PLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNE 128
Query: 617 A 617
+
Sbjct: 129 S 129
>UNIPROTKB|C9J8X5 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0033234 "negative
regulation of protein sumoylation" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:AC005786 HOGENOM:HOG000247029
OrthoDB:EOG4G7C05 HGNC:HGNC:5002 ChiTaRS:HMG20B EMBL:AC116968
IPI:IPI00877739 ProteinModelPortal:C9J8X5 SMR:C9J8X5 STRING:C9J8X5
Ensembl:ENST00000416526 ArrayExpress:C9J8X5 Bgee:C9J8X5
Uniprot:C9J8X5
Length = 215
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P++ Y+ + N+ RE+I+ +P + F EI K G W + EK Y ++ + K+ Y +
Sbjct: 73 PVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMK 132
Query: 617 ALKAYKE 623
L+AY++
Sbjct: 133 ELRAYQQ 139
>TAIR|locus:2154433 [details] [associations]
symbol:HMGB6 "high-mobility group box 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
HSSP:P07155 EMBL:AB018110 HOGENOM:HOG000242532 EMBL:AK118688
EMBL:AY086023 IPI:IPI00542717 RefSeq:NP_568431.1 UniGene:At.31011
ProteinModelPortal:Q8LDF9 SMR:Q8LDF9 STRING:Q8LDF9 PaxDb:Q8LDF9
PRIDE:Q8LDF9 EnsemblPlants:AT5G23420.1 GeneID:832408
KEGG:ath:AT5G23420 TAIR:At5g23420 eggNOG:NOG297541
InParanoid:Q8LDF9 OMA:AFFLFMD PhylomeDB:Q8LDF9
ProtClustDB:CLSN2689854 Genevestigator:Q8LDF9 Uniprot:Q8LDF9
Length = 241
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 21/64 (32%), Positives = 42/64 (65%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P++A+ ++ +D R+ K ++ G + AK GGE WK+++ +EK Y +K + K +YN+
Sbjct: 118 PLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNK 177
Query: 617 ALKA 620
+L++
Sbjct: 178 SLES 181
>UNIPROTKB|O94900 [details] [associations]
symbol:TOX "Thymocyte selection-associated high mobility
group box protein TOX" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 HOGENOM:HOG000230949 HOVERGEN:HBG051183
eggNOG:NOG284736 EMBL:AB018351 EMBL:BC016665 IPI:IPI00006065
RefSeq:NP_055544.1 UniGene:Hs.491805 UniGene:Hs.634856
ProteinModelPortal:O94900 SMR:O94900 STRING:O94900
PhosphoSite:O94900 PaxDb:O94900 PRIDE:O94900 DNASU:9760
Ensembl:ENST00000361421 GeneID:9760 KEGG:hsa:9760 UCSC:uc003xtw.1
CTD:9760 GeneCards:GC08M059717 HGNC:HGNC:18988 HPA:HPA018322
MIM:606863 neXtProt:NX_O94900 PharmGKB:PA162406704
InParanoid:O94900 OMA:CRNPPAQ OrthoDB:EOG44XJGQ GenomeRNAi:9760
NextBio:36737 ArrayExpress:O94900 Bgee:O94900 CleanEx:HS_TOX
Genevestigator:O94900 GermOnline:ENSG00000198846 Uniprot:O94900
Length = 526
Score = 126 (49.4 bits), Expect = 0.00015, P = 0.00015
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F E++K +W + ++K Y +K AK++Y +
Sbjct: 264 PVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLK 323
Query: 617 ALKAYK 622
L AY+
Sbjct: 324 QLAAYR 329
>MGI|MGI:2181659 [details] [associations]
symbol:Tox "thymocyte selection-associated high mobility
group box" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:2181659 Pfam:PF00505
GO:GO:0005634 GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GeneTree:ENSGT00560000076898
HOGENOM:HOG000230949 HOVERGEN:HBG051183 eggNOG:NOG284736 CTD:9760
OMA:CRNPPAQ OrthoDB:EOG44XJGQ EMBL:AF472514 EMBL:AK029694
EMBL:AK038671 EMBL:AK051947 EMBL:BC080732 IPI:IPI00471452
IPI:IPI00754510 RefSeq:NP_663757.3 UniGene:Mm.435828
UniGene:Mm.488241 PDB:2CO9 PDBsum:2CO9 ProteinModelPortal:Q66JW3
SMR:Q66JW3 PhosphoSite:Q66JW3 PaxDb:Q66JW3 PRIDE:Q66JW3
Ensembl:ENSMUST00000039987 GeneID:252838 KEGG:mmu:252838
UCSC:uc008rxt.1 InParanoid:Q66JW3 ChiTaRS:TOX
EvolutionaryTrace:Q66JW3 NextBio:387345 Bgee:Q66JW3
Genevestigator:Q66JW3 GermOnline:ENSMUSG00000041272 Uniprot:Q66JW3
Length = 526
Score = 126 (49.4 bits), Expect = 0.00015, P = 0.00015
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F E++K +W + ++K Y +K AK++Y +
Sbjct: 264 PVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLK 323
Query: 617 ALKAYK 622
L AY+
Sbjct: 324 QLAAYR 329
>GENEDB_PFALCIPARUM|MAL8P1.72 [details] [associations]
symbol:MAL8P1.72 "high mobility group protein,
putative" species:5833 "Plasmodium falciparum" [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359
EMBL:AL844507 HOGENOM:HOG000197861 HSSP:P11632
GenomeReviews:AL844507_GR ProtClustDB:PTZ00199
RefSeq:XP_001349346.1 ProteinModelPortal:Q8IB14 IntAct:Q8IB14
MINT:MINT-1562034 EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422
KEGG:pfa:MAL8P1.72 EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV
Uniprot:Q8IB14
Length = 99
Score = 102 (41.0 bits), Expect = 0.00016, P = 0.00015
Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 558 MSAYMMWFNDMREKIKKDNPGIS--FTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
+SAYM + D R +I K+ P ++ ++ K GE W +S +KA Y++K K Y+
Sbjct: 28 LSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYS 87
Query: 616 EALKAYKE 623
+ ++ Y++
Sbjct: 88 KEIEEYRK 95
>UNIPROTKB|Q8IB14 [details] [associations]
symbol:PfHMGB2 "High mobility group protein" species:36329
"Plasmodium falciparum 3D7" [GO:0006359 "regulation of
transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006359 EMBL:AL844507
HOGENOM:HOG000197861 HSSP:P11632 GenomeReviews:AL844507_GR
ProtClustDB:PTZ00199 RefSeq:XP_001349346.1
ProteinModelPortal:Q8IB14 IntAct:Q8IB14 MINT:MINT-1562034
EnsemblProtists:MAL8P1.72:mRNA GeneID:2655422 KEGG:pfa:MAL8P1.72
EuPathDB:PlasmoDB:PF3D7_0817900 OMA:SAYMFYV Uniprot:Q8IB14
Length = 99
Score = 102 (41.0 bits), Expect = 0.00016, P = 0.00015
Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 558 MSAYMMWFNDMREKIKKDNPGIS--FTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
+SAYM + D R +I K+ P ++ ++ K GE W +S +KA Y++K K Y+
Sbjct: 28 LSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKKAQLDKVRYS 87
Query: 616 EALKAYKE 623
+ ++ Y++
Sbjct: 88 KEIEEYRK 95
>RGD|1594733 [details] [associations]
symbol:LOC690521 "similar to High mobility group protein 1
(HMG-1) (High mobility group protein B1) (Amphoterin)
(Heparin-binding protein p30)" species:10116 "Rattus norvegicus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] REFSEQ:XM_001074673 Ncbi:XP_001074673
Length = 213
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 558 MSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + RE+ KK +P ++F+E +KK E WK +S+KEK ++++ K Y
Sbjct: 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAMSAKEKGKFEDMAKADKARYE 72
Query: 616 EALKAY 621
+K Y
Sbjct: 73 REMKTY 78
>UNIPROTKB|E1BQV6 [details] [associations]
symbol:TOX3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0034056
"estrogen response element binding" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0043524
"negative regulation of neuron apoptotic process" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0051219 "phosphoprotein binding" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0045893 GO:GO:0043524
GO:GO:0003682 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0034056 GeneTree:ENSGT00560000076898
OMA:HSLIMRS EMBL:AADN02038322 EMBL:AADN02038323 EMBL:AADN02038324
EMBL:AADN02038325 EMBL:AADN02038326 EMBL:AADN02038327
EMBL:AADN02038328 EMBL:AADN02038329 IPI:IPI00576205
Ensembl:ENSGALT00000005929 ArrayExpress:E1BQV6 Uniprot:E1BQV6
Length = 580
Score = 133 (51.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+SAY ++F D + IK NP +F E++K +W ++ ++K Y K AK++Y +
Sbjct: 263 PVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLK 322
Query: 617 ALKAYK 622
AL AY+
Sbjct: 323 ALAAYR 328
Score = 37 (18.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 397 KSGVLHTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAY 453
KS SSI +E+ + EK+ + K + P K+ ++ +K AY
Sbjct: 211 KSATPSPSSSINEEDADESNRATGEKRAAPDSGKKPKTPKKKKKKDPNEPQKPVSAY 267
>RGD|1304726 [details] [associations]
symbol:Smarce1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily e, member 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565
"nBAF complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505 RGD:1304726
GO:GO:0005634 GO:GO:0007399 GO:GO:0003677 GO:GO:0016568
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
UniGene:Rn.10829 HOVERGEN:HBG054558 KO:K11651 EMBL:BC091314
EMBL:BC092210 EMBL:EU327027 EMBL:EU327028 EMBL:EU327029
EMBL:EU327030 EMBL:EU327031 IPI:IPI00370983 RefSeq:NP_001020164.1
UniGene:Rn.8513 ProteinModelPortal:Q56A18 STRING:Q56A18
GeneID:303518 KEGG:rno:303518 InParanoid:Q56A18 NextBio:651503
Genevestigator:Q56A18 Uniprot:Q56A18
Length = 376
Score = 121 (47.7 bits), Expect = 0.00030, P = 0.00030
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+ YM + + +++K NP + EI K G +W+ ++ +EK EY + K +YNE
Sbjct: 34 PLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNE 93
Query: 617 ALKAY 621
++KAY
Sbjct: 94 SMKAY 98
>UNIPROTKB|F5H3H1 [details] [associations]
symbol:SRY "Sex-determining region Y protein" species:9606
"Homo sapiens" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0030238 "male sex
determination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005516 "calmodulin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007548 "sex differentiation"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017253 PIRSF:PIRSF037653
Pfam:PF00505 GO:GO:0005634 GO:GO:0030154 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007548 GO:GO:0030238
PANTHER:PTHR10270:SF48 HGNC:HGNC:11311 EMBL:AC006040
IPI:IPI01013243 ProteinModelPortal:F5H3H1 SMR:F5H3H1
Ensembl:ENST00000534739 ArrayExpress:F5H3H1 Bgee:F5H3H1
Uniprot:F5H3H1
Length = 165
Score = 110 (43.8 bits), Expect = 0.00032, P = 0.00032
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PM+A+++W D R K+ +NP + +EI+K+ G WK ++ EK + ++ K + + E
Sbjct: 63 PMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHRE 122
Query: 617 ALKAYK 622
YK
Sbjct: 123 KYPNYK 128
>UNIPROTKB|E2QX86 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0008080
"N-acetyltransferase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053
GO:GO:0045892 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0008080 GO:GO:0006337 CTD:6605 KO:K11651
OMA:EDESIPM GeneTree:ENSGT00390000003628 EMBL:AAEX03006463
RefSeq:XP_862912.2 Ensembl:ENSCAFT00000025430 GeneID:608250
KEGG:cfa:608250 NextBio:20893916 Uniprot:E2QX86
Length = 393
Score = 121 (47.7 bits), Expect = 0.00032, P = 0.00032
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+ YM + + +++K NP + EI K G +W+ ++ +EK EY + K +YNE
Sbjct: 51 PLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNE 110
Query: 617 ALKAY 621
++KAY
Sbjct: 111 SMKAY 115
>UNIPROTKB|B4DGM3 [details] [associations]
symbol:SMARCE1 "cDNA FLJ55202, highly similar to
SWI/SNF-related matrix-associatedactin-dependent regulator of
chromatin subfamily E member 1" species:9606 "Homo sapiens"
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 UniGene:Hs.740388
HGNC:HGNC:11109 HOVERGEN:HBG054558 OrthoDB:EOG4229K4 EMBL:AC004585
EMBL:AC073508 EMBL:AK294666 IPI:IPI01015411 SMR:B4DGM3
STRING:B4DGM3 Ensembl:ENST00000431889 Uniprot:B4DGM3
Length = 393
Score = 121 (47.7 bits), Expect = 0.00032, P = 0.00032
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+ YM + + +++K NP + EI K G +W+ ++ +EK EY + K +YNE
Sbjct: 51 PLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNE 110
Query: 617 ALKAY 621
++KAY
Sbjct: 111 SMKAY 115
>UNIPROTKB|Q969G3 [details] [associations]
symbol:SMARCE1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0017053
"transcriptional repressor complex" evidence=IPI] [GO:0008080
"N-acetyltransferase activity" evidence=IDA] [GO:0016514 "SWI/SNF
complex" evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0000228 "nuclear chromosome"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=NAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=NAS] [GO:0006337 "nucleosome disassembly" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IDA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR009071
PROSITE:PS00353 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0007399 GO:GO:0003677 EMBL:CH471152 GO:GO:0006357
GO:GO:0003682 GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0003713 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 Pathway_Interaction_DB:ar_tf_pathway
GO:GO:0008080 GO:GO:0006337 GO:GO:0000228 EMBL:AF035262
EMBL:BT007176 EMBL:AK001532 EMBL:AK095047 EMBL:BC007082
EMBL:BC011017 EMBL:BC063700 IPI:IPI00017669 IPI:IPI01018063
RefSeq:NP_003070.3 UniGene:Hs.740388 ProteinModelPortal:Q969G3
SMR:Q969G3 DIP:DIP-27614N DIP:DIP-33041N IntAct:Q969G3
MINT:MINT-1137973 STRING:Q969G3 PhosphoSite:Q969G3 DMDM:61247587
PaxDb:Q969G3 PRIDE:Q969G3 DNASU:6605 Ensembl:ENST00000348513
GeneID:6605 KEGG:hsa:6605 UCSC:uc002hux.2 CTD:6605
GeneCards:GC17M038781 HGNC:HGNC:11109 HPA:HPA003916 MIM:603111
neXtProt:NX_Q969G3 PharmGKB:PA35959 eggNOG:NOG291422
HOGENOM:HOG000230965 HOVERGEN:HBG054558 InParanoid:Q969G3 KO:K11651
OMA:EDESIPM OrthoDB:EOG4229K4 GenomeRNAi:6605 NextBio:25703
ArrayExpress:Q969G3 Bgee:Q969G3 CleanEx:HS_SMARCE1
Genevestigator:Q969G3 GermOnline:ENSG00000073584 Uniprot:Q969G3
Length = 411
Score = 121 (47.7 bits), Expect = 0.00035, P = 0.00035
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+ YM + + +++K NP + EI K G +W+ ++ +EK EY + K +YNE
Sbjct: 69 PLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNE 128
Query: 617 ALKAY 621
++KAY
Sbjct: 129 SMKAY 133
>MGI|MGI:1927347 [details] [associations]
symbol:Smarce1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily e, member 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=ISO]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565
"nBAF complex" evidence=IDA] InterPro:IPR009071 PROSITE:PS00353
MGI:MGI:1927347 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0007399 GO:GO:0003677 GO:GO:0006338 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0008080 GO:GO:0006337 CTD:6605
eggNOG:NOG291422 HOGENOM:HOG000230965 HOVERGEN:HBG054558 KO:K11651
OMA:EDESIPM OrthoDB:EOG4229K4 EMBL:AF035263 EMBL:AK076177
EMBL:BC047141 EMBL:BC061498 EMBL:BC065043 IPI:IPI00119892
RefSeq:NP_065643.1 UniGene:Mm.379086 UniGene:Mm.389717
ProteinModelPortal:O54941 SMR:O54941 IntAct:O54941 STRING:O54941
PhosphoSite:O54941 PaxDb:O54941 PRIDE:O54941
Ensembl:ENSMUST00000103133 GeneID:57376 KEGG:mmu:57376
GeneTree:ENSGT00390000003628 InParanoid:O54941 ChiTaRS:SMARCE1
NextBio:313752 Bgee:O54941 Genevestigator:O54941
GermOnline:ENSMUSG00000037935 Uniprot:O54941
Length = 411
Score = 121 (47.7 bits), Expect = 0.00035, P = 0.00035
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+ YM + + +++K NP + EI K G +W+ ++ +EK EY + K +YNE
Sbjct: 69 PLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNE 128
Query: 617 ALKAY 621
++KAY
Sbjct: 129 SMKAY 133
>UNIPROTKB|F1NCC9 [details] [associations]
symbol:SMARCE1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0008080
"N-acetyltransferase activity" evidence=IEA] [GO:0016514 "SWI/SNF
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0017053 "transcriptional
repressor complex" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] [GO:0071564 "npBAF complex"
evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 CTD:6605 KO:K11651 OMA:EDESIPM
GeneTree:ENSGT00390000003628 EMBL:AADN02068741 IPI:IPI00580760
RefSeq:NP_001006335.2 UniGene:Gga.6244 Ensembl:ENSGALT00000006174
GeneID:420047 KEGG:gga:420047 NextBio:20823013 Uniprot:F1NCC9
Length = 412
Score = 121 (47.7 bits), Expect = 0.00035, P = 0.00035
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+ YM + + +++K NP + EI K G +W+ ++ +EK EY + K +YNE
Sbjct: 69 PLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNE 128
Query: 617 ALKAY 621
++KAY
Sbjct: 129 SMKAY 133
>UNIPROTKB|A5PKF6 [details] [associations]
symbol:SMARCE1 "SMARCE1 protein" species:9913 "Bos taurus"
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0016922 "ligand-dependent nuclear
receptor binding" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008080 "N-acetyltransferase activity"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006337 "nucleosome disassembly" evidence=IEA]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0017053 GO:GO:0045892
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0008080 GO:GO:0006337 CTD:6605 eggNOG:NOG291422
HOGENOM:HOG000230965 HOVERGEN:HBG054558 KO:K11651 OMA:EDESIPM
OrthoDB:EOG4229K4 GeneTree:ENSGT00390000003628 EMBL:DAAA02049142
EMBL:BC142470 IPI:IPI00854477 RefSeq:NP_001092586.1
UniGene:Bt.46178 STRING:A5PKF6 Ensembl:ENSBTAT00000020356
GeneID:540910 KEGG:bta:540910 InParanoid:A5PKF6 NextBio:20878909
Uniprot:A5PKF6
Length = 415
Score = 121 (47.7 bits), Expect = 0.00035, P = 0.00035
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P+ YM + + +++K NP + EI K G +W+ ++ +EK EY + K +YNE
Sbjct: 69 PLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNE 128
Query: 617 ALKAY 621
++KAY
Sbjct: 129 SMKAY 133
>UNIPROTKB|E2R4Z8 [details] [associations]
symbol:HMG20B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IEA] [GO:0033234 "negative regulation of
protein sumoylation" evidence=IEA] InterPro:IPR009071 Pfam:PF00505
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
GeneTree:ENSGT00700000104521 OMA:RLRKMNT EMBL:AAEX03012575
EMBL:AAEX03012576 Ensembl:ENSCAFT00000030501 Uniprot:E2R4Z8
Length = 316
Score = 119 (46.9 bits), Expect = 0.00036, P = 0.00036
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P++ Y+ + N+ RE+I+ +P + F EI K G W + EK Y ++ + K+ Y +
Sbjct: 73 PVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMK 132
Query: 617 ALKAYKE 623
L+AY++
Sbjct: 133 ELRAYQQ 139
>UNIPROTKB|Q32L68 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9913 "Bos taurus" [GO:0005694 "chromosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR009071 PROSITE:PS00353 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049
HOGENOM:HOG000247029 HOVERGEN:HBG059870 EMBL:BC109740
IPI:IPI00703994 RefSeq:NP_001033143.1 UniGene:Bt.62699 HSSP:P48431
ProteinModelPortal:Q32L68 SMR:Q32L68 STRING:Q32L68 PRIDE:Q32L68
GeneID:507723 KEGG:bta:507723 CTD:10362 InParanoid:Q32L68
OrthoDB:EOG4G7C05 NextBio:20868195 Uniprot:Q32L68
Length = 317
Score = 119 (46.9 bits), Expect = 0.00036, P = 0.00036
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P++ Y+ + N+ RE+I+ +P + F EI K G W + EK Y ++ + K+ Y +
Sbjct: 73 PVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEREKQQYMK 132
Query: 617 ALKAYKE 623
L+AY++
Sbjct: 133 ELRAYQQ 139
>UNIPROTKB|Q9P0W2 [details] [associations]
symbol:HMG20B "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily E member
1-related" species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IEA]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0006325 "chromatin organization"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0007596
"blood coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_604 InterPro:IPR009071 PROSITE:PS00353
EMBL:AF331191 Pfam:PF00505 GO:GO:0005694 GO:GO:0005654
GO:GO:0003677 GO:GO:0007596 GO:GO:0003700 GO:GO:0006351
GO:GO:0016568 eggNOG:COG5648 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007049 EMBL:CH471139
GO:GO:0006325 EMBL:AC005786 HOVERGEN:HBG059870 CTD:10362
EMBL:AF146223 EMBL:AL355709 EMBL:AF288679 EMBL:AF072165
EMBL:AK090733 EMBL:BC002552 EMBL:BC003505 EMBL:BC004408
EMBL:BC021585 EMBL:AF072836 EMBL:CR456754 IPI:IPI00464951
IPI:IPI00478316 IPI:IPI00929221 RefSeq:NP_006330.2
UniGene:Hs.406534 ProteinModelPortal:Q9P0W2 SMR:Q9P0W2
IntAct:Q9P0W2 MINT:MINT-1372120 STRING:Q9P0W2 PhosphoSite:Q9P0W2
DMDM:57012878 PRIDE:Q9P0W2 DNASU:10362 Ensembl:ENST00000333651
GeneID:10362 KEGG:hsa:10362 UCSC:uc002lya.3 GeneCards:GC19P003572
HGNC:HGNC:5002 MIM:605535 neXtProt:NX_Q9P0W2 PharmGKB:PA29332
InParanoid:Q9P0W2 OMA:RLRKMNT ChiTaRS:HMG20B GenomeRNAi:10362
NextBio:39281 ArrayExpress:Q9P0W2 Bgee:Q9P0W2 CleanEx:HS_HMG20B
Genevestigator:Q9P0W2 GermOnline:ENSG00000064961 Uniprot:Q9P0W2
Length = 317
Score = 119 (46.9 bits), Expect = 0.00036, P = 0.00036
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P++ Y+ + N+ RE+I+ +P + F EI K G W + EK Y ++ + K+ Y +
Sbjct: 73 PVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMK 132
Query: 617 ALKAYKE 623
L+AY++
Sbjct: 133 ELRAYQQ 139
>MGI|MGI:1916567 [details] [associations]
symbol:Hmgb4 "high-mobility group box 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1916567 Pfam:PF00505
GO:GO:0005634 GO:GO:0005694 GO:GO:0003677 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 Pfam:PF09011
GeneTree:ENSGT00560000076898 HOGENOM:HOG000197861
HOVERGEN:HBG009000 CTD:127540 KO:K11297 OMA:RYQEEMM
OrthoDB:EOG4255TS HSSP:P17741 EMBL:AK005588 EMBL:BC061030
IPI:IPI00118961 RefSeq:NP_081312.2 UniGene:Mm.331893
ProteinModelPortal:Q6P8W9 SMR:Q6P8W9 PhosphoSite:Q6P8W9
PRIDE:Q6P8W9 Ensembl:ENSMUST00000053830 GeneID:69317 KEGG:mmu:69317
eggNOG:NOG288392 InParanoid:Q6P8W9 NextBio:329122 Bgee:Q6P8W9
CleanEx:MM_HMGB4 Genevestigator:Q6P8W9 Uniprot:Q6P8W9
Length = 181
Score = 111 (44.1 bits), Expect = 0.00050, P = 0.00050
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P S+++++ D +K++NP + ++AK G++W T EK Y++K + Y E
Sbjct: 96 PPSSFLLFSRDHYAMLKQENPDWTVVQVAKAAGKMWSTTDEAEKKPYEQKAALMRAKYFE 155
Query: 617 ALKAYK 622
+AY+
Sbjct: 156 EQEAYR 161
>SGD|S000004676 [details] [associations]
symbol:ABF2 "Mitochondrial DNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0090139
"mitochondrial DNA packaging" evidence=IMP] [GO:0000001
"mitochondrion inheritance" evidence=IMP] [GO:0000002
"mitochondrial genome maintenance" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0000262 "mitochondrial chromosome"
evidence=IDA] [GO:0008301 "DNA binding, bending" evidence=IDA]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA]
InterPro:IPR009071 SGD:S000004676 Pfam:PF00505 GO:GO:0005634
EMBL:M73753 EMBL:AJ223169 EMBL:Z48952 EMBL:AY557967 EMBL:BK006946
PIR:A41302 RefSeq:NP_013788.1 ProteinModelPortal:Q02486 SMR:Q02486
DIP:DIP-5492N IntAct:Q02486 MINT:MINT-505363 STRING:Q02486
PaxDb:Q02486 PeptideAtlas:Q02486 EnsemblFungi:YMR072W GeneID:855094
KEGG:sce:YMR072W CYGD:YMR072w eggNOG:COG5648
GeneTree:ENSGT00680000100562 OMA:FHESSKP OrthoDB:EOG483HF0
NextBio:978405 Genevestigator:Q02486 GermOnline:YMR072W
GO:GO:0000262 GO:GO:0008301 GO:GO:0090139 GO:GO:0000001
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
Uniprot:Q02486
Length = 183
Score = 111 (44.1 bits), Expect = 0.00054, P = 0.00054
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P SAY ++ D R + K+NP + EI+K GE W+ + + K +Y + K +Y +
Sbjct: 46 PTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNLEADIKEKYISERKKLYSEYQK 105
Query: 617 ALKAYKE 623
A K + E
Sbjct: 106 AKKEFDE 112
>UNIPROTKB|F1M4J9 [details] [associations]
symbol:F1M4J9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00562835
Ensembl:ENSRNOT00000051890 Uniprot:F1M4J9
Length = 196
Score = 112 (44.5 bits), Expect = 0.00058, P = 0.00058
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNPGIS--FTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + ++ KK P +S F+E +KK E WKT+S+KEK ++ E + KA + +
Sbjct: 13 MSSYAFFVQACWKEHKKKQPDVSVNFSEFSKKCSERWKTMSTKEKGKF-ENIGKADKAHY 71
Query: 616 EALKAYKE 623
E K +K+
Sbjct: 72 ETKKKFKD 79
>ZFIN|ZDB-GENE-051113-268 [details] [associations]
symbol:sox14 "SRY-box containing gene 14"
species:7955 "Danio rerio" [GO:0021854 "hypothalamus development"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 ZFIN:ZDB-GENE-051113-268 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0021854
GeneTree:ENSGT00690000101940 HSSP:P48431 CTD:8403 eggNOG:NOG302715
HOGENOM:HOG000231647 KO:K09267 OrthoDB:EOG47D9H0 InterPro:IPR022097
Pfam:PF12336 EMBL:BC108033 IPI:IPI00511312 RefSeq:NP_001032769.1
UniGene:Dr.52424 ProteinModelPortal:Q32PP9 SMR:Q32PP9 STRING:Q32PP9
Ensembl:ENSDART00000104532 GeneID:557661 KEGG:dre:557661
InParanoid:Q32PP9 OMA:LGCPSQH NextBio:20882094 Bgee:Q32PP9
Uniprot:Q32PP9
Length = 238
Score = 114 (45.2 bits), Expect = 0.00066, P = 0.00066
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PM+A+M+W R K+ ++NP + +EI+K+ G WK +S EK Y ++ + + + +
Sbjct: 11 PMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSESEKRPYIDEAKRLRAQHMK 70
Query: 617 ALKAYK 622
YK
Sbjct: 71 EHPDYK 76
>UNIPROTKB|F1LY72 [details] [associations]
symbol:F1LY72 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00568202 Ensembl:ENSRNOT00000048758 Uniprot:F1LY72
Length = 203
Score = 112 (44.5 bits), Expect = 0.00067, P = 0.00067
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNPGIS--FTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + ++ KK P +S F+E +KK E WKT+S+KEK ++ E + KA + +
Sbjct: 13 MSSYAFFVQACWKEHKKKQPDVSVNFSEFSKKCSERWKTMSTKEKGKF-ENIGKADKAHY 71
Query: 616 EALKAYKE 623
E K +K+
Sbjct: 72 ETKKKFKD 79
>UNIPROTKB|F1LZG8 [details] [associations]
symbol:F1LZG8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 IPI:IPI00560402
Ensembl:ENSRNOT00000043102 Uniprot:F1LZG8
Length = 203
Score = 112 (44.5 bits), Expect = 0.00067, P = 0.00067
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 558 MSAYMMWFNDMREKIKKDNPGIS--FTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYN 615
MS+Y + ++ KK P +S F+E +KK E WKT+S+KEK ++ E + KA + +
Sbjct: 13 MSSYAFFVQACWKEHKKKQPDVSVNFSEFSKKCSERWKTMSTKEKGKF-ENIGKADKAHY 71
Query: 616 EALKAYKE 623
E K +K+
Sbjct: 72 ETKKKFKD 79
>UNIPROTKB|Q3BDU3 [details] [associations]
symbol:PMS1 "Rhabdomyosarcoma antigen MU-RMS-40.10E"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983 "mismatched
DNA binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR002099
InterPro:IPR003594 InterPro:IPR013507 Pfam:PF01119 SMART:SM00387
Prosite:PS00058 Pfam:PF00505 GO:GO:0005524 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0006298
Gene3D:3.30.565.10 SUPFAM:SSF55874 EMBL:AC013468 GO:GO:0030983
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 InterPro:IPR014762 PANTHER:PTHR10073 EMBL:AC008122
UniGene:Hs.111749 HGNC:HGNC:9121 HOGENOM:HOG000039972
HOVERGEN:HBG031886 ChiTaRS:PMS1 EMBL:AY540751 IPI:IPI00916989
SMR:Q3BDU3 STRING:Q3BDU3 Ensembl:ENST00000450931 Uniprot:Q3BDU3
Length = 659
Score = 120 (47.3 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PMSA ++ D R + +NP S + + ELWKT+S +EK +Y+EK K E YN
Sbjct: 535 PMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNS 594
Query: 617 ALK 619
+K
Sbjct: 595 QMK 597
Score = 47 (21.6 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 357 ERGFIFIHKPPIH 369
ER FIFI+ P+H
Sbjct: 217 ERSFIFINSRPVH 229
>MGI|MGI:1341190 [details] [associations]
symbol:Hmg20b "high mobility group 20B" species:10090 "Mus
musculus" [GO:0000400 "four-way junction DNA binding" evidence=ISA]
[GO:0000794 "condensed nuclear chromosome" evidence=ISA]
[GO:0002111 "BRCA2-BRAF35 complex" evidence=ISA] [GO:0003677 "DNA
binding" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=NAS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006325 "chromatin
organization" evidence=NAS] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=NAS] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0033234
"negative regulation of protein sumoylation" evidence=IDA]
[GO:0035914 "skeletal muscle cell differentiation" evidence=IMP]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IGI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] InterPro:IPR009071 PROSITE:PS00353 MGI:MGI:1341190
Pfam:PF00505 GO:GO:0005694 GO:GO:0003700 GO:GO:0006351
GO:GO:0006338 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0007049 GO:GO:0045666 GO:GO:0035914
GO:GO:0033234 HOGENOM:HOG000247029 HOVERGEN:HBG059870
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT ChiTaRS:HMG20B EMBL:AF067430 EMBL:AF146224
EMBL:AL355734 EMBL:AL355735 EMBL:BC011334 IPI:IPI00323315
RefSeq:NP_001156637.1 RefSeq:NP_001156638.1 RefSeq:NP_034570.1
UniGene:Mm.38474 PDB:2CRJ PDBsum:2CRJ ProteinModelPortal:Q9Z104
SMR:Q9Z104 IntAct:Q9Z104 STRING:Q9Z104 PhosphoSite:Q9Z104
PRIDE:Q9Z104 Ensembl:ENSMUST00000020454 Ensembl:ENSMUST00000105323
Ensembl:ENSMUST00000105324 Ensembl:ENSMUST00000167481 GeneID:15353
KEGG:mmu:15353 eggNOG:NOG241877 InParanoid:Q9Z104
EvolutionaryTrace:Q9Z104 NextBio:287960 Bgee:Q9Z104
CleanEx:MM_HMG20B Genevestigator:Q9Z104
GermOnline:ENSMUSG00000020232 GO:GO:0002111 GO:GO:0000400
Uniprot:Q9Z104
Length = 317
Score = 116 (45.9 bits), Expect = 0.00078, P = 0.00078
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P++ Y+ + N+ RE+I+ +P + F EI K G W + EK Y ++ K K+ Y +
Sbjct: 73 PVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLK 132
Query: 617 ALKAYKE 623
L AY++
Sbjct: 133 ELWAYQQ 139
>RGD|1309235 [details] [associations]
symbol:Hmg20b "high mobility group 20 B" species:10116 "Rattus
norvegicus" [GO:0033234 "negative regulation of protein
sumoylation" evidence=IEA;ISO] [GO:0035914 "skeletal muscle cell
differentiation" evidence=ISO] [GO:0045666 "positive regulation of
neuron differentiation" evidence=IEA;ISO] [GO:0046982 "protein
heterodimerization activity" evidence=IEA;ISO] InterPro:IPR009071
Pfam:PF00505 RGD:1309235 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH474029
GeneTree:ENSGT00700000104521 CTD:10362 OrthoDB:EOG4G7C05
OMA:RLRKMNT IPI:IPI00365950 RefSeq:NP_001102201.1 UniGene:Rn.162912
Ensembl:ENSRNOT00000028002 GeneID:362825 KEGG:rno:362825
UCSC:RGD:1309235 NextBio:681393 Uniprot:D4A586
Length = 318
Score = 116 (45.9 bits), Expect = 0.00078, P = 0.00078
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
P++ Y+ + N+ RE+I+ +P + F EI K G W + EK Y ++ K K+ Y +
Sbjct: 73 PVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLK 132
Query: 617 ALKAYKE 623
L AY++
Sbjct: 133 ELWAYQQ 139
>UNIPROTKB|E9PC65 [details] [associations]
symbol:PMS1 "PMS1 protein homolog 1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR009071 InterPro:IPR002099
InterPro:IPR003594 InterPro:IPR013507 Pfam:PF01119 Pfam:PF00505
GO:GO:0005524 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0006298 Gene3D:3.30.565.10 SUPFAM:SSF55874
EMBL:AC013468 GO:GO:0030983 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 PANTHER:PTHR10073 EMBL:AC008122
HGNC:HGNC:9121 ChiTaRS:PMS1 IPI:IPI00873522
ProteinModelPortal:E9PC65 SMR:E9PC65 Ensembl:ENST00000424307
UCSC:uc010zgb.1 ArrayExpress:E9PC65 Bgee:E9PC65 Uniprot:E9PC65
Length = 711
Score = 120 (47.3 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PMSA ++ D R + +NP S + + ELWKT+S +EK +Y+EK K E YN
Sbjct: 513 PMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNS 572
Query: 617 ALK 619
+K
Sbjct: 573 QMK 575
Score = 47 (21.6 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 357 ERGFIFIHKPPIH 369
ER FIFI+ P+H
Sbjct: 195 ERSFIFINSRPVH 207
>UNIPROTKB|A4QNG3 [details] [associations]
symbol:sox14 "Transcription factor Sox-14" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007399 "nervous system development" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634 GO:GO:0007399
GO:GO:0043565 GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0021854
GeneTree:ENSGT00690000101940 CTD:8403 eggNOG:NOG302715
HOGENOM:HOG000231647 KO:K09267 OMA:LGCPSQH EMBL:AM922298
EMBL:BC135637 RefSeq:NP_001093703.1 UniGene:Str.72434
ProteinModelPortal:A4QNG3 SMR:A4QNG3 STRING:A4QNG3
Ensembl:ENSXETT00000049107 GeneID:100101715 KEGG:xtr:100101715
Xenbase:XB-GENE-485370 Bgee:A4QNG3 Uniprot:A4QNG3
Length = 239
Score = 113 (44.8 bits), Expect = 0.00087, P = 0.00087
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PM+A+M+W R K+ ++NP + +EI+K+ G WK +S EK Y ++ + + + +
Sbjct: 11 PMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMK 70
Query: 617 ALKAYK 622
YK
Sbjct: 71 EHPDYK 76
>UNIPROTKB|B0ZTE2 [details] [associations]
symbol:sox14 "Transcription factor Sox-14" species:8355
"Xenopus laevis" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0007399 "nervous
system development" evidence=IEP] [GO:0043565 "sequence-specific
DNA binding" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR009071
Pfam:PF00505 GO:GO:0005634 GO:GO:0007399 GO:GO:0043565
GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 CTD:8403 KO:K09267 EMBL:EU403425
RefSeq:NP_001165685.1 UniGene:Xl.85736 ProteinModelPortal:B0ZTE2
SMR:B0ZTE2 GeneID:100337614 KEGG:xla:100337614
Xenbase:XB-GENE-6458188 Uniprot:B0ZTE2
Length = 239
Score = 113 (44.8 bits), Expect = 0.00087, P = 0.00087
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PM+A+M+W R K+ ++NP + +EI+K+ G WK +S EK Y ++ + + + +
Sbjct: 11 PMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMK 70
Query: 617 ALKAYK 622
YK
Sbjct: 71 EHPDYK 76
>UNIPROTKB|Q9W7R6 [details] [associations]
symbol:SOX14 "Transcription factor SOX-14" species:9031
"Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR009071 Pfam:PF00505
GO:GO:0005634 GO:GO:0043565 GO:GO:0006351 GO:GO:0000122
Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118
EMBL:AB026622 EMBL:AF193760 EMBL:M86326 IPI:IPI00585113 PIR:I50196
RefSeq:NP_990092.1 UniGene:Gga.286 ProteinModelPortal:Q9W7R6
SMR:Q9W7R6 STRING:Q9W7R6 GeneID:395526 KEGG:gga:395526 CTD:8403
eggNOG:NOG302715 HOGENOM:HOG000231647 HOVERGEN:HBG105618
InParanoid:Q9W7R6 KO:K09267 OrthoDB:EOG47D9H0 NextBio:20815603
InterPro:IPR022097 Pfam:PF12336 Uniprot:Q9W7R6
Length = 240
Score = 113 (44.8 bits), Expect = 0.00088, P = 0.00088
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PM+A+M+W R K+ ++NP + +EI+K+ G WK +S EK Y ++ + + + +
Sbjct: 11 PMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMK 70
Query: 617 ALKAYK 622
YK
Sbjct: 71 EHPDYK 76
>UNIPROTKB|O95416 [details] [associations]
symbol:SOX14 "Transcription factor SOX-14" species:9606
"Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007399
"nervous system development" evidence=TAS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0007399 EMBL:CH471052 GO:GO:0043565 GO:GO:0006351
GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 CTD:8403 eggNOG:NOG302715 HOGENOM:HOG000231647
HOVERGEN:HBG105618 KO:K09267 OrthoDB:EOG47D9H0 InterPro:IPR022097
Pfam:PF12336 OMA:LGCPSQH EMBL:AF107043 EMBL:AJ006230 EMBL:AF193436
EMBL:AK314127 EMBL:BC106729 EMBL:BC106730 EMBL:AF032451
IPI:IPI00030676 RefSeq:NP_004180.1 UniGene:Hs.248184
ProteinModelPortal:O95416 SMR:O95416 STRING:O95416
PhosphoSite:O95416 PRIDE:O95416 Ensembl:ENST00000306087 GeneID:8403
KEGG:hsa:8403 UCSC:uc003erm.2 GeneCards:GC03P137483 HGNC:HGNC:11193
MIM:604747 neXtProt:NX_O95416 PharmGKB:PA36030 InParanoid:O95416
PhylomeDB:O95416 GenomeRNAi:8403 NextBio:31446 Bgee:O95416
CleanEx:HS_SOX14 Genevestigator:O95416 GermOnline:ENSG00000168875
Uniprot:O95416
Length = 240
Score = 113 (44.8 bits), Expect = 0.00088, P = 0.00088
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PM+A+M+W R K+ ++NP + +EI+K+ G WK +S EK Y ++ + + + +
Sbjct: 11 PMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMK 70
Query: 617 ALKAYK 622
YK
Sbjct: 71 EHPDYK 76
>UNIPROTKB|P61259 [details] [associations]
symbol:SOX14 "Transcription factor SOX-14" species:9541
"Macaca fascicularis" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR009071 Pfam:PF00505 GO:GO:0005634
GO:GO:0043565 GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 HOVERGEN:HBG105618
InterPro:IPR022097 Pfam:PF12336 EMBL:AB063098
ProteinModelPortal:P61259 SMR:P61259 Uniprot:P61259
Length = 240
Score = 113 (44.8 bits), Expect = 0.00088, P = 0.00088
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PM+A+M+W R K+ ++NP + +EI+K+ G WK +S EK Y ++ + + + +
Sbjct: 11 PMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMK 70
Query: 617 ALKAYK 622
YK
Sbjct: 71 EHPDYK 76
>MGI|MGI:98362 [details] [associations]
symbol:Sox14 "SRY-box containing gene 14" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR009071
MGI:MGI:98362 Pfam:PF00505 GO:GO:0005634 GO:GO:0043565
GO:GO:0006351 GO:GO:0000122 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 CTD:8403 eggNOG:NOG302715
HOVERGEN:HBG105618 KO:K09267 OrthoDB:EOG47D9H0 OMA:LGCPSQH
EMBL:AF193437 EMBL:AF193435 EMBL:AF182357 EMBL:Z18963
IPI:IPI00929882 PIR:S30244 RefSeq:NP_035570.1 UniGene:Mm.261595
UniGene:Mm.484077 ProteinModelPortal:Q04892 SMR:Q04892
STRING:Q04892 PhosphoSite:Q04892 PRIDE:Q04892
Ensembl:ENSMUST00000054819 GeneID:20669 KEGG:mmu:20669
InParanoid:Q04892 NextBio:299141 Bgee:Q04892 CleanEx:MM_SOX14
Genevestigator:Q04892 Uniprot:Q04892
Length = 240
Score = 113 (44.8 bits), Expect = 0.00088, P = 0.00088
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PM+A+M+W R K+ ++NP + +EI+K+ G WK +S EK Y ++ + + + +
Sbjct: 11 PMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMK 70
Query: 617 ALKAYK 622
YK
Sbjct: 71 EHPDYK 76
>RGD|1309654 [details] [associations]
symbol:Sox14 "SRY (sex determining region Y)-box 14"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR009071
Pfam:PF00505 RGD:1309654 Gene3D:1.10.30.10 SMART:SM00398
SUPFAM:SSF47095 PROSITE:PS50118 EMBL:CH473954 CTD:8403
HOVERGEN:HBG105618 KO:K09267 OMA:LGCPSQH EMBL:EU853677
IPI:IPI00870866 RefSeq:NP_001100320.1 UniGene:Rn.141574 SMR:B7SZV3
GeneID:300954 KEGG:rno:300954 UCSC:RGD:1309654 NextBio:647780
Genevestigator:B7SZV3 Uniprot:B7SZV3
Length = 240
Score = 113 (44.8 bits), Expect = 0.00088, P = 0.00088
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PM+A+M+W R K+ ++NP + +EI+K+ G WK +S EK Y ++ + + + +
Sbjct: 11 PMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMK 70
Query: 617 ALKAYK 622
YK
Sbjct: 71 EHPDYK 76
>UNIPROTKB|Q9XT60 [details] [associations]
symbol:SRY "Sex-determining region Y protein" species:9615
"Canis lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0007548 "sex differentiation"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005516 "calmodulin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0030238 "male sex
determination" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA]
InterPro:IPR009071 InterPro:IPR017253 PIRSF:PIRSF037653
Pfam:PF00505 GO:GO:0005737 GO:GO:0030154 GO:GO:0003677
GO:GO:0016607 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0007548
GO:GO:0030238 HOVERGEN:HBG008712 PANTHER:PTHR10270:SF48
EMBL:AF107021 ProteinModelPortal:Q9XT60 SMR:Q9XT60 Uniprot:Q9XT60
Length = 220
Score = 112 (44.5 bits), Expect = 0.00089, P = 0.00089
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 557 PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
PM+A+++W D R K+ +NP + +EI+K+ G WK ++ EK + E+ + + + E
Sbjct: 56 PMNAFLVWSRDQRRKMALENPQMQNSEISKQLGYQWKMLTEAEKWPFFEEAQRLQAMHRE 115
Query: 617 ALKAYK 622
YK
Sbjct: 116 KYPDYK 121
>UNIPROTKB|I3LUS6 [details] [associations]
symbol:HMGXB4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016589 "NURF complex" evidence=IEA] InterPro:IPR009071
Pfam:PF00505 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 GO:GO:0016589 KO:K11298
GeneTree:ENSGT00390000012436 RefSeq:XP_003361315.1
Ensembl:ENSSSCT00000027184 GeneID:100621900 KEGG:ssc:100621900
OMA:CLANEIP Uniprot:I3LUS6
Length = 196
Score = 110 (43.8 bits), Expect = 0.00099, P = 0.00099
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 558 MSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEA 617
MSAY ++ + R I D+PGI F E++KK E+WK + K+K + +K + N+A
Sbjct: 6 MSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKA 65
>UNIPROTKB|F1LTL3 [details] [associations]
symbol:F1LTL3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR009071
InterPro:IPR017967 PROSITE:PS00353 Pfam:PF00505 GO:GO:0005634
GO:GO:0003677 Gene3D:1.10.30.10 SMART:SM00398 SUPFAM:SSF47095
PROSITE:PS50118 Pfam:PF09011 GeneTree:ENSGT00560000076717
IPI:IPI00562366 Ensembl:ENSRNOT00000048766 Uniprot:F1LTL3
Length = 168
Score = 107 (42.7 bits), Expect = 0.00099, P = 0.00099
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 559 SAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDE-KVNKAKEDYNEA 617
SA++ D KIK ++PG+S ++AKK GE+W T ++ ++ Y++ K K KE
Sbjct: 95 SAFLFCSED-HPKIKGEHPGLSIGDVAKKLGEMW-TTATDDRQPYEKRKAAKLKEKAKGN 152
Query: 618 LKAYKE 623
L AY+E
Sbjct: 153 LAAYRE 158
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.134 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 764 590 0.00083 120 3 11 22 0.44 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 168
No. of states in DFA: 619 (66 KB)
Total size of DFA: 326 KB (2165 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 52.19u 0.10s 52.29t Elapsed: 00:00:03
Total cpu time: 52.22u 0.10s 52.32t Elapsed: 00:00:03
Start: Thu Aug 15 11:52:43 2013 End: Thu Aug 15 11:52:46 2013
WARNINGS ISSUED: 1