RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2633
(764 letters)
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region;
chromaint, double PH domain, yfact, DNA replication,
RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10
PDB: 2gcj_A
Length = 261
Score = 295 bits (755), Expect = 8e-95
Identities = 97/259 (37%), Positives = 162/259 (62%), Gaps = 4/259 (1%)
Query: 177 DPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIP 236
EAF + + +A + GDAI F ++ TPRGRYDI I+ + +L GKT++YK+
Sbjct: 2 HMAEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQ 61
Query: 237 ISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELK 296
+ R+ +LP D + V++++PP++QGQT Y FL L F +DE +E++L +++ +
Sbjct: 62 HRQIQRIVSLPKADDIHHMMVMAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYE 121
Query: 297 EKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPL 356
E Y+ KL K+ T+ V++ ++K + +R++ VPG ++ AV+CS+KA GY+YPL
Sbjct: 122 ENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYLYPL 181
Query: 357 ERGFIFIHKPPIHIRFEEIATVNFARSGGS---TRSFDFEIELKSG-VLHTFSSIEKEEY 412
+ F F+ KP ++I F +++ VN +R+G + +R+FD E+ L+S TF++I KEE
Sbjct: 182 DNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQ 241
Query: 413 GKLFDFIREKKLRVKNTGK 431
L F++ K LRVKN +
Sbjct: 242 QLLEQFLKSKNLRVKNEDR 260
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus,
phosphoprotein, transcription, transcription regulation,
transposition; 1.43A {Saccharomyces cerevisiae} PDB:
3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Length = 237
Score = 205 bits (522), Expect = 3e-61
Identities = 40/239 (16%), Positives = 82/239 (34%), Gaps = 16/239 (6%)
Query: 195 ATGDAIAVFNEIQCLTP-RGRYDIKIFNS-------FFQLHGKTFDYKI--PISTVLRMF 244
+ + I + L+P R + D+ + S L G + I +
Sbjct: 4 SETNTIFKLEGVSVLSPLRKKLDLVFYLSNVDGSPVITLLKGNDRELSIYQLNKNIKMAS 63
Query: 245 TLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLD 304
LP + ++ + + + N++ T + K
Sbjct: 64 FLPVPEKPNLIYLFMTYTSC-EDNKFSEPVVMTLNKENTLNQFKKLGLLDSNVTDFEKCV 122
Query: 305 KELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIH 364
+ + KI VN T+ + + + C G +Y L IF
Sbjct: 123 EYIRKQAILTGFKISNPFVNS--TLVDTDAEKINSFHLQCHRGTKEGTLYFLPDHIIFGF 180
Query: 365 KPPI-HIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIREK 422
K PI + +I ++ ++ + +F+ + K G + FS I++ EY K+ D+++ K
Sbjct: 181 KKPILLLDASDIESITYSS--ITRLTFNASLVTKDGEKYEFSMIDQTEYAKIDDYVKRK 237
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P),
saccharomyces cerevisi structural genomics, PSI-2; 1.70A
{Saccharomyces cerevisiae}
Length = 191
Score = 163 bits (413), Expect = 2e-46
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 2 TEALEFQEVSSEF-----RGALCPGKLKITDQNIVFKNKKTG--------KVEQINGPDL 48
E L FQ +S++F + G+ +I D + +K +G K + +L
Sbjct: 14 RENLYFQGMSTDFDRIYLNQSKFSGRFRIADSGLGWKISTSGGSAANQARKPFLLPATEL 73
Query: 49 DFVNWQKLVGTWALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWN 108
V W + + L+I KN + + GF + + + I + F F I V ++E S+RGWN
Sbjct: 74 STVQWSRGCRGYDLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRGWN 133
Query: 109 WGGTKFIGNVLSFDVNNTTAFEIPLRDVSQCT-TGKNEVTVEFHPNDEAAE 158
WG T N + F +N FEIP ++ T KNEV +EF+ DE +
Sbjct: 134 WGKTDLARNEMVFALNGKPTFEIPYARINNTNLTSKNEVGIEFNIQDEEYQ 184
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box
domain, structural genomics, NPPSFA; NMR {Mus musculus}
Length = 102
Score = 108 bits (271), Expect = 3e-28
Identities = 35/99 (35%), Positives = 54/99 (54%)
Query: 538 ESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSS 597
S K+KKKD N P+KP+SAY ++F D + IK NP +F E++K +W +
Sbjct: 2 SSGSSGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGE 61
Query: 598 KEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTS 636
++K Y +K AK++Y + L AY+ S + D S
Sbjct: 62 EQKQVYKKKTEAAKKEYLKQLAAYRASLVSKSYTDSGPS 100
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 107 bits (269), Expect = 4e-28
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 535 KDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKT 594
T RKKKD NAPK+ +SAYM + N+ R+ ++ +NP I+F ++ KK GE WK
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKA 61
Query: 595 VSSKEKAEYDEKVNKAKEDYNEALKAYKES 624
++ +EK Y+ K K+ Y + Y +
Sbjct: 62 LTPEEKQPYEAKAQADKKRYESEKELYNAT 91
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of
chromatin subfamily...; structural DNA-binding protein
BRAF35, DNA-bending; NMR {Mus musculus}
Length = 92
Score = 105 bits (263), Expect = 3e-27
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 548 KKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKV 607
+ PK P++ Y+ + N+ RE+I+ +P + F EI K G W + EK Y ++
Sbjct: 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEA 61
Query: 608 NKAKEDYNEALKAYKESGGGQDSDDGKTS 636
K K+ Y + L AY++S + + S
Sbjct: 62 EKEKQQYLKELWAYQQSEAYKVCTESGPS 90
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding
protein; NMR {Homo sapiens} SCOP: a.21.1.1
Length = 99
Score = 104 bits (260), Expect = 8e-27
Identities = 23/95 (24%), Positives = 46/95 (48%)
Query: 545 KRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYD 604
K+ KK + PKKP++ Y +F + R K K +P +S ++ K + +K + K+K +Y
Sbjct: 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYI 61
Query: 605 EKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSK 639
+ + K+++ L ++E + K
Sbjct: 62 QDFQREKQEFERNLARFREDHPDLIQNAKKLEHHH 96
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus
norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A
1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Length = 77
Score = 102 bits (257), Expect = 1e-26
Identities = 31/75 (41%), Positives = 51/75 (68%)
Query: 549 KDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVN 608
KD NAPK+P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K
Sbjct: 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 61
Query: 609 KAKEDYNEALKAYKE 623
K KE Y + + AY+
Sbjct: 62 KLKEKYEKDIAAYRA 76
>2lhj_A High mobility group protein homolog NHP1; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; NMR {Babesia bovis}
Length = 97
Score = 102 bits (255), Expect = 3e-26
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 533 SKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGIS--FTEIAKKGGE 590
+ + ++ KKD NAPK+ +S+YM + + R +I +NP I+ I K G
Sbjct: 2 AGASDRTGVRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGA 61
Query: 591 LWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKES 624
W +S +EK Y+ ++ + Y Y +
Sbjct: 62 AWNALSDEEKKPYERMSDEDRVRYEREKAEYAQR 95
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group
protein 2A, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 86
Score = 100 bits (250), Expect = 1e-25
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 540 SGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGIS--FTEIAKKGGELWKTVSS 597
S GS+ K D PK MSAY + RE+ KK NP + F E +KK E WKT+S
Sbjct: 2 SSGSSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSG 61
Query: 598 KEKAEYDEKVNKAKEDYNEALKAY 621
KEK+++DE K Y+ +K Y
Sbjct: 62 KEKSKFDEMAKADKVRYDREMKDY 85
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus
norvegicus} SCOP: a.21.1.1
Length = 83
Score = 99.7 bits (249), Expect = 2e-25
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 548 KKDKNAPKKPMSAYMMWFNDMREKIKKDNPG--ISFTEIAKKGGELWKTVSSKEKAEYDE 605
K D P+ MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++
Sbjct: 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
Query: 606 KVNKAKEDYNEALKAYKESGG 626
K Y +K Y G
Sbjct: 62 MAKADKARYEREMKTYIPPKG 82
>3nm9_A HMG-D, high mobility group protein D; DNA bending,
non-sequence-specific, HMG chromosomal protein; HET:
DNA; 2.85A {Drosophila melanogaster} PDB: 1e7j_A* 1hma_A
1qrv_A*
Length = 73
Score = 98.5 bits (246), Expect = 3e-25
Identities = 36/74 (48%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Query: 552 NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAK 611
+ PK+P+SAY +W N RE IK++NPGI TE+AK+GGELW+ + +K+E++ K KAK
Sbjct: 2 DKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMK--DKSEWEAKAAKAK 59
Query: 612 EDYNEALKAYKESG 625
+DY+ A+K ++ +G
Sbjct: 60 DDYDRAVKEFEANG 73
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding
protein; NMR {Drosophila melanogaster}
Length = 73
Score = 96.2 bits (240), Expect = 2e-24
Identities = 32/74 (43%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 552 NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAK 611
+ PK+ +A+M+W ND RE IK++NPGI TEIAKKGGE+WK + +K+++++ K K
Sbjct: 2 HMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELK--DKSKWEDAAAKDK 59
Query: 612 EDYNEALKAYKESG 625
+ Y++ ++ YK
Sbjct: 60 QRYHDEMRNYKPEA 73
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 96.3 bits (240), Expect = 3e-24
Identities = 30/89 (33%), Positives = 42/89 (47%)
Query: 548 KKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKV 607
+ KKPMSA ++ D R + +NP S + + ELWKT+S +EK +Y+EK
Sbjct: 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKA 61
Query: 608 NKAKEDYNEALKAYKESGGGQDSDDGKTS 636
K E YN +K E D S
Sbjct: 62 TKDLERYNSQMKRAIEQESQMSLKDSGPS 90
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: a.21.1.1
Length = 90
Score = 92.8 bits (231), Expect = 5e-23
Identities = 19/84 (22%), Positives = 39/84 (46%)
Query: 539 SSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSK 598
S S + K PK+P+SA ++ + R +++++ P +S +E+ + +W +S K
Sbjct: 6 SGKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEK 65
Query: 599 EKAEYDEKVNKAKEDYNEALKAYK 622
+KA+Y + K
Sbjct: 66 KKAKYKAREAALKAQSERKSGPSS 89
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription
regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo
sapiens}
Length = 214
Score = 96.0 bits (238), Expect = 1e-22
Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 19/204 (9%)
Query: 546 RKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDE 605
+ PKKP+S+Y+ + + K NP TE+ ++ + W+ + +K Y +
Sbjct: 2 GSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQD 61
Query: 606 KVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKPAKKKETASTAVSPHKVK------- 658
+ Y E + +KE + K K+K K
Sbjct: 62 AYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSA 121
Query: 659 ----SKEFIESNGSSSDSDDDKKASSKRKRDSDED--------SKAKTKKKKEKSESESD 706
E + S + K K SD + + +T+ E E
Sbjct: 122 YNVYVAERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 181
Query: 707 SGESEKEKKSKSKPKGDKSKSKSK 730
E ++ + K + +
Sbjct: 182 MIEVGRKDLLRRTIKKQRKYGAEE 205
Score = 71.7 bits (175), Expect = 2e-14
Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 4/156 (2%)
Query: 501 DSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKDKESSGGSTKRKKKDKNAPKKPMSA 560
+ + + KE+ + +S + K + + K++ PK+P SA
Sbjct: 62 AYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSA 121
Query: 561 YMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKA 620
Y ++ + ++ K D+P E K E WK +S EK Y + + + Y+ +K+
Sbjct: 122 YNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKS 177
Query: 621 YKESGGGQDSDDGKTSKSKKPAKKKETASTAVSPHK 656
++E D KK K H
Sbjct: 178 WEEQMIEVGRKDLLRRTIKKQRKYGAEECLQHHHHH 213
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding,
helix-turn-helix motif, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 173
Score = 93.9 bits (233), Expect = 2e-22
Identities = 39/117 (33%), Positives = 65/117 (55%)
Query: 509 SEGTKKKKKEKSRKTITISEKPRKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDM 568
+ K+K + + + K G TK+K KD NAPK+P SA+ ++ ++
Sbjct: 57 KTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEY 116
Query: 569 REKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESG 625
R KIK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y + + AY+ G
Sbjct: 117 RPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG 173
Score = 85.8 bits (212), Expect = 1e-19
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 540 SGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSS 597
S GS+ K D P+ MS+Y + RE+ KK +P ++F+E +KK E WKT+S+
Sbjct: 2 SSGSSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSA 61
Query: 598 KEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKP 641
KEK ++++ K Y +K Y G + K+P
Sbjct: 62 KEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRP 105
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group,
transcription, LSP1, mitochon transcription-DNA complex;
HET: DNA; 2.50A {Homo sapiens}
Length = 238
Score = 94.9 bits (235), Expect = 5e-22
Identities = 37/222 (16%), Positives = 70/222 (31%), Gaps = 12/222 (5%)
Query: 529 KPRKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKG 588
+ + PKKP+S+Y+ + + K NP TE+ ++
Sbjct: 17 RGSHMASMTGGQQMGRGSSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRI 76
Query: 589 GELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKE-----------SGGGQDSDDGKTSK 637
+ W+ + +K Y + + Y E + +KE K
Sbjct: 77 AQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMT 136
Query: 638 SKKPAKKKETASTAVSPHKVKSKEFIESNGSSSDSDDDKKASSKRKRDSDEDSKAKTKKK 697
KK S + V E + S + K K SD + K +
Sbjct: 137 KKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQEKLKTVKENWKNLSDSE-KELYIQH 195
Query: 698 KEKSESESDSGESEKEKKSKSKPKGDKSKSKSKKEDEIDDEE 739
++ E+ + E++ + D + KK+ + EE
Sbjct: 196 AKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRKYGAEE 237
Score = 69.9 bits (170), Expect = 2e-13
Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 4/145 (2%)
Query: 501 DSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKDKESSGGSTKRKKKDKNAPKKPMSA 560
+ + + KE+ + +S + K + + K++ PK+P SA
Sbjct: 94 AYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSA 153
Query: 561 YMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKA 620
Y ++ + ++ K D+P E K E WK +S EK Y + + + Y+ +K+
Sbjct: 154 YNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKS 209
Query: 621 YKESGGGQDSDDGKTSKSKKPAKKK 645
++E D KK K
Sbjct: 210 WEEQMIEVGRKDLLRRTIKKQRKYG 234
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT
DNA, protein-drug-DNA compl regulation-DNA complex; HET:
DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB:
1j3x_A
Length = 71
Score = 84.7 bits (210), Expect = 2e-20
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 554 PKKPMSAYMMWFNDMREKIKKDNPGIS--FTEIAKKGGELWKTVSSKEKAEYDEKVNKAK 611
P+ MS+Y + RE+ KK +P S F+E +KK E WKT+S+KEK ++++ K
Sbjct: 2 PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 61
Query: 612 EDYNEALKAY 621
Y +K Y
Sbjct: 62 ARYEREMKTY 71
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX,
amphoterin, DNA/structural protein complex; NMR {Homo
sapiens} SCOP: a.21.1.1 a.21.1.1
Length = 159
Score = 86.8 bits (215), Expect = 4e-20
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 551 KNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKA 610
++ K+PM+A+++W D R K+ +NP + +EI+K+ G WK ++ EK + ++ K
Sbjct: 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKL 61
Query: 611 KEDYNEALKAYKESGGGQDSDDGKTSKSKKP 641
+ + E YK G + K+P
Sbjct: 62 QAMHREKYPNYKYRKGETKKKFKDPNAPKRP 92
Score = 78.3 bits (193), Expect = 4e-17
Identities = 38/111 (34%), Positives = 67/111 (60%)
Query: 512 TKKKKKEKSRKTITISEKPRKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREK 571
T+ +K ++ + R+ + + G TK+K KD NAPK+P SA+ ++ ++ R K
Sbjct: 47 TEAEKWPFFQEAQKLQAMHREKYPNYKYRKGETKKKFKDPNAPKRPPSAFFLFCSEYRPK 106
Query: 572 IKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622
IK ++PG+S ++AKK GE+W ++ +K Y++K K KE Y + + AY+
Sbjct: 107 IKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 157
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial
transcription, activator, DNA- binding, mitochondrion,
phosphoprotein; 1.35A {Homo sapiens}
Length = 67
Score = 77.3 bits (191), Expect = 8e-18
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 554 PKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKED 613
PK+P SAY ++ + ++ K D+P E K E WK +S EK Y + + +
Sbjct: 3 PKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETR 58
Query: 614 YNEALKAY 621
Y+ +K++
Sbjct: 59 YHNEMKSW 66
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
NMR {Mus musculus} SCOP: a.21.1.1
Length = 108
Score = 71.9 bits (176), Expect = 2e-15
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 539 SSGGSTKRKKKDKNAPKKP-MSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSS 597
SSG S + K K P KP ++Y ++ ++ +K + TE + WK +S
Sbjct: 2 SSGSSGQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQ 57
Query: 598 KEKAEYDEKVNKAKEDYNEALKAYKES 624
KEK Y +K ++ K+DY L + ES
Sbjct: 58 KEKDAYHKKCDQKKKDYEVELLRFLES 84
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Length = 101
Score = 69.6 bits (170), Expect = 9e-15
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 552 NAPKK-PMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKA 610
+ PKK PM+ Y + ++ + ++ E + G W+ +S +K Y + +
Sbjct: 6 SGPKKPPMNGYQKFSQELLSNGELNHL--PLKERMVEIGSRWQRISQSQKEHYKKLAEEQ 63
Query: 611 KEDYNEALKAYKESGGGQDSDDGKTSKSKKPAKKKET 647
+ Y L + +S QD K S K +
Sbjct: 64 QRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSGPSS 100
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription
factor 1, high mobility group box transcription factor
1, structural genomics; NMR {Homo sapiens}
Length = 87
Score = 67.0 bits (164), Expect = 5e-14
Identities = 17/79 (21%), Positives = 32/79 (40%)
Query: 539 SSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSK 598
S N K+PM+A+M++ R + + PG I+ G+ WK + ++
Sbjct: 3 SGSSGGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNE 62
Query: 599 EKAEYDEKVNKAKEDYNEA 617
E+ Y + E+
Sbjct: 63 ERRMYTLEAKALAEEQKRL 81
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group
box domain, helix-turn-helix, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 62.9 bits (152), Expect = 1e-12
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 552 NAPKKPMSAYMMWFNDMREKIKKDNPGIS-FTEIAKKGGELWKTVSSKEKAEYDEKVNKA 610
+ +P + + MW + R I DNP S +I K+G ++ +S++E+ + K
Sbjct: 4 GSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63
Query: 611 KEDYNEALKAYKESG 625
K K
Sbjct: 64 TASEGTEAKKRKSGP 78
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX
domain, structural genomics, NPPSFA, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
Length = 82
Score = 60.7 bits (148), Expect = 8e-12
Identities = 14/74 (18%), Positives = 37/74 (50%)
Query: 549 KDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVN 608
+ ++PM+A++++ R +++++P + K + W + KEK +Y +
Sbjct: 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAK 62
Query: 609 KAKEDYNEALKAYK 622
+ K+ + +A Y+
Sbjct: 63 EYKDAFMKANPGYR 76
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain,
activator, DNA-binding, NUC transcription; HET: DNA;
2.77A {Homo sapiens}
Length = 106
Score = 60.1 bits (146), Expect = 2e-11
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 530 PRKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGG 589
D + S + K+K K+PM+A+M+W R K+ P + E++K G
Sbjct: 6 HHHVDDDDKMSENLYFQSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLG 65
Query: 590 ELWKTVSSKEKAEYDEKVNKAKE 612
+LW+ ++ EK + E+ + +
Sbjct: 66 KLWRLLNESEKRPFVEEAERLRV 88
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens}
Length = 71
Score = 58.8 bits (143), Expect = 3e-11
Identities = 19/69 (27%), Positives = 40/69 (57%)
Query: 554 PKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKED 613
++PM+A+M+W D R+++ + NP + E++K G+ WK ++ EK + E+ + +
Sbjct: 3 IRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQ 62
Query: 614 YNEALKAYK 622
+ + YK
Sbjct: 63 HMQDHPNYK 71
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA
complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1
PDB: 1hrz_A*
Length = 76
Score = 56.4 bits (137), Expect = 2e-10
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 555 KKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKE 612
K+PM+A+++W D R K+ +NP + +EI+K+ G WK ++ EK + ++ K +
Sbjct: 6 KRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQA 63
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor,
SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP:
a.21.1.1 PDB: 1j47_A
Length = 85
Score = 54.9 bits (133), Expect = 8e-10
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 555 KKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKE 612
K+PM+A+++W D R K+ +NP + +EI+K+ G WK ++ EK + ++ K +
Sbjct: 6 KRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQA 63
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation,
transcription-DNA CO; HET: DNA; 2.40A {Mus musculus}
Length = 79
Score = 54.5 bits (132), Expect = 1e-09
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 555 KKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKE 612
K+PM+A+M+W R KI + +P + EI+K+ G+ WK + +K + ++ + +
Sbjct: 4 KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRL 61
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain,
endodermal, activator, DNA- nucleus, transcription
regulation, transcrip complex; HET: DNA; 2.75A {Mus
musculus} PDB: 2yul_A
Length = 83
Score = 53.7 bits (130), Expect = 2e-09
Identities = 17/58 (29%), Positives = 36/58 (62%)
Query: 555 KKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKE 612
++PM+A+M+W D R+++ + NP + E++K G+ WK ++ EK + E+ + +
Sbjct: 8 RRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRV 65
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG,
TCR-A, transcription factor; HET: DNA; NMR {Mus
musculus} SCOP: a.21.1.1
Length = 86
Score = 53.8 bits (130), Expect = 3e-09
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 555 KKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKE 612
KKP++A+M++ +MR + ++ I + G W +S +E+A+Y E K ++
Sbjct: 4 KKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQ 61
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus
musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Length = 80
Score = 53.3 bits (129), Expect = 3e-09
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 555 KKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKE 612
K+PM+A+M+W R K+ ++NP + +EI+K+ G WK +S EK + ++ + +
Sbjct: 4 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRA 61
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition,
chromatin, DNA binding protein, DNA sequence specific,
testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Length = 81
Score = 53.3 bits (129), Expect = 3e-09
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 555 KKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKE 612
K+PM+A+M+W D R KI + P + + I+K G WK +++ EK Y E+ + +
Sbjct: 6 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSK 63
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 3e-07
Identities = 40/266 (15%), Positives = 79/266 (29%), Gaps = 72/266 (27%)
Query: 224 FQL-HGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDE 282
L HG + ++ + + T ++ F L P T F D+
Sbjct: 9 LTLSHG-SLEHVLLVPTASFFIASQLQE----QFNKILPEP-----------TEGFAADD 52
Query: 283 TSEMELPFSEQELKEKYEG----KLDKELSGPTYEVMAKIMK-----VIVNRKI-TVPGS 332
P + EL K+ G ++ G +V+ + + I +
Sbjct: 53 E-----PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 333 FRGHTGTSA------VTCSYKAAAGYIYPLERGFIFIHKPPIHIRFE-------EIATVN 379
T+ + A P ++ + F ++ +
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKK----SNSAL---FRAVGEGNAQLVAI- 159
Query: 380 FARSGG--STRSFDFEIELKSGVLH-TFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPN 436
F GG +T + FE EL+ L+ T+ + + L F E + T +
Sbjct: 160 F---GGQGNTDDY-FE-ELRD--LYQTYHVLVGD----LIKFSAETLSELIRTTLDAEKV 208
Query: 437 YKE--DFGS--SDDEKEPD-AYLARV 457
+ + + + PD YL +
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSI 234
Score = 49.3 bits (117), Expect = 5e-06
Identities = 76/474 (16%), Positives = 129/474 (27%), Gaps = 155/474 (32%)
Query: 63 RIFLKNGSLHRFA----GFKETEIDK----ICSFFKTNFKIDVPEKELS----VRGWNWG 110
+L+ +H A +T + K I ++ P + S R G
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 111 GTKFI------GNVLS-FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEM 163
+ + GN F+ E LRD+ Q T V +AE+L E+
Sbjct: 153 NAQLVAIFGGQGNTDDYFE-------E--LRDLYQ--TYHVLVGDLI---KFSAETLSEL 198
Query: 164 --------RFYIPTNEIAG-----DTDPVEAFKDSVMNQASV--INATGDA-IAVFNEIQ 207
+ + I P + + S+ S I A V ++
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI--PISCPLIGVIQLAHYVVTAKLL 256
Query: 208 CLTPRGRYDIKIFNSFFQLHGKTFDYK-IPISTVLRMFTLPHKDGRQNFFVISLDPPIKQ 266
TP L G T + + + + D ++FFV
Sbjct: 257 GFTPG--------ELRSYLKGATGHSQGLVTAVAIAE-----TDSWESFFVSVRK----- 298
Query: 267 GQTRYHFLTLLF-----NQDETSEMELPFSE-QELKEKYEGKLDKELSGPTYEVM----- 315
+T+LF + LP S ++ E EG P+ M
Sbjct: 299 ------AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV-------PSP--MLSISN 343
Query: 316 ---AKIMKVI--VNRKITVPGSFRGH-----TGTSAVTCSY--------------KAAAG 351
++ + N +P + + V KA +G
Sbjct: 344 LTQEQVQDYVNKTNS--HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Query: 352 Y----IYPL-ERGFIFIHKPPIHIRFEEIATVNF-------ARSGGSTR--SFDFEI--- 394
I P ER K RF + F A + +
Sbjct: 402 LDQSRI-PFSER------KLKFSNRFLPV-ASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 395 ELKSGVLHTFS-----SIEKEEYGKLFDFIREKKLR-VKNTGKGEKPNYKEDFG 442
+++ V TF + ++ D I ++ T K + DFG
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF--KATHILDFG 505
Score = 40.8 bits (95), Expect = 0.002
Identities = 83/530 (15%), Positives = 144/530 (27%), Gaps = 223/530 (42%)
Query: 131 IPLRDVSQCTTGKNEVTVEFHPNDE--AAESLIEMRFY----IPTNEIAGDTDP---VE- 180
R ++ + G E + P A L E +F PT A D +P E
Sbjct: 4 YSTRPLT-LSHGSLEHVLLV-PTASFFIASQLQE-QFNKILPEPTEGFAADDEPTTPAEL 60
Query: 181 -----AFKDSVMNQASVINATGDAIAVFNEIQC--LTPRGRYDI---------------- 217
+ S++ + V E + L G DI
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL--EGN-DIHALAAKLLQENDTTLV 117
Query: 218 ---KIFNSFFQ---LHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVI-----SLDPPIKQ 266
++ ++ + + FD K S + R +G I + D ++
Sbjct: 118 KTKELIKNYITARIMAKRPFD-KKSNSALFR----AVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 267 GQTRY----HFLTLLFNQDETSEM--ELPFSEQELKEKYEGKLDKE--LSGPT------- 311
+ Y + L ++E EL + + ++ + L+ L P+
Sbjct: 173 LRDLYQTYHVLVGDLI--KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 312 ------------------YEVMAKIMKVIVNRKITVPGSFRGHT-GTS--------AVTC 344
Y V AK++ PG R + G + AV
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGF-------TPGELRSYLKGATGHSQGLVTAVAI 283
Query: 345 S--------YKAAAGYI-------------YP---------------------------- 355
+ + + I YP
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 356 LERGFI--FI-----HKPPI-HIRFEEIATVNFARS---GGSTRSFDFEIELKSGVLHTF 404
L + + ++ H P + EI+ VN A++ G +S L+
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQV---EISLVNGAKNLVVSGPPQS-----------LYGL 389
Query: 405 -SSIEKEEYGKLFD-----FIREKKLRVKN-----TGKGEKPNYKEDFGSSDDEKEPDAY 453
++ K + D F E+KL+ N P F S
Sbjct: 390 NLTLRKAKAPSGLDQSRIPF-SERKLKFSNRFLPVAS----P-----FHSH--------L 431
Query: 454 LARVKREAAERDDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSD 503
L A++ ++D + S FN + V YD T SD
Sbjct: 432 LV----PASDLINKDLVKNNVS----FNAKDIQIPV---YD---TFDGSD 467
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 5e-05
Identities = 86/627 (13%), Positives = 166/627 (26%), Gaps = 155/627 (24%)
Query: 72 HRFAGFKETEID----KICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS---FD-- 122
H F+ E I S F+ F + K++ ++LS D
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ---------DMPKSILSKEEIDHI 54
Query: 123 VNNTTAFEIPLRDV-SQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVEA 181
+ + A LR + + + V + + + T
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 182 FKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQL--------HG----- 228
+D + N A +N R + +K+ + +L G
Sbjct: 115 QRDRLYN-------DNQVFAKYN-----VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 229 KT-------FDYKIPISTVLRMF--TLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFN 279
KT YK+ ++F L N S + ++ Q + + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNL----KNCN----SPETVLEMLQKLLYQIDPNWT 214
Query: 280 QDETSEMELPFSEQELKEKYEGKLDKELSGPTYE----VM-----AKIMKVIVNR-KITV 329
+ ++ + L + L YE V+ AK KI +
Sbjct: 215 SRSDHSSNIKLRIHSIQAE----LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 330 PGSFRGHTGTSAVTCSYKAAAGYIYPLE---RGF-------IFIHKPPIHIRF----EEI 375
T VT AA L+ + + + R E+
Sbjct: 271 T------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPREV 322
Query: 376 ATVN-FARS--GGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIREKKLRVKNTGKG 432
T N S S R L T+ + + KL I E L V +
Sbjct: 323 LTTNPRRLSIIAESIRDG----------LATWDNWKHVNCDKLTTII-ESSLNVLEPAE- 370
Query: 433 EKPNYKEDFGS-SDDEKEPDAYLARVKREAAERDDEDDEDEDESTDEDFNPDQAESDVAE 491
+ + + P L+ + + + D ++ + E
Sbjct: 371 YRKMF-DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-----------YSLVE 418
Query: 492 EYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKDKESSGGSTKRKKKD- 550
+ T + + + + R + P+ D D
Sbjct: 419 KQPKESTISIPSIYLELKV-KLENEYALHRSIVDHYNIPKTFDSDDLI------PPYLDQ 471
Query: 551 ----------KNA-PKKPMSAYMMWFND---MREKIKKDNPGISFTEIAKKGGELWKTVS 596
KN + M+ + M F D + +KI+ D+ + + G + T+
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS------GSILNTLQ 525
Query: 597 SKEKAEYDEKVNKAKEDYNEALKAYKE 623
+ Y + Y + A +
Sbjct: 526 QLKF--YKPYICDNDPKYERLVNAILD 550
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 37.0 bits (86), Expect = 0.019
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 446 DEKEPDAYLARVKREAAERDDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDED 505
+ ++E DDED++D D D + +D++
Sbjct: 232 KGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSS---------DDENAPVATNANATTDQE 282
Query: 506 SD 507
D
Sbjct: 283 GD 284
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 36.1 bits (83), Expect = 0.050
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 1/114 (0%)
Query: 419 IREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDEDDE-DEDESTD 477
+ E + P+ +E+ +S E+ + K+ + E D++
Sbjct: 4 VEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGAS 63
Query: 478 EDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEKPR 531
D Q E E+ + + D D D D + G KKKKK+K R ++ P
Sbjct: 64 VDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPS 117
Score = 31.0 bits (70), Expect = 1.7
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 666 NGSSSDSDDDKKASSKRKRDSDEDSKAKTKKKKEKSESESDSGESEKEKKSKSKPKGDKS 725
NG D ++ A+S ++E +K K +KKK+ + + ++ S + +
Sbjct: 15 NGDLDPDDREEGAAST----AEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQ 70
Query: 726 KSKSKKEDEIDDEEYDE 742
+S ED+ DE+ ++
Sbjct: 71 LERSALEDKERDEDDED 87
Score = 31.0 bits (70), Expect = 1.7
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 8/109 (7%)
Query: 597 SKEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKPAKKKETASTAVSPHK 656
+ A DE + + E + ++ G DG T K KK KKK P
Sbjct: 58 KESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPS 117
Query: 657 V------KSKEFIESNGSSSDSDDDKKASSKRKRDSDEDSKAKTKKKKE 699
V + F + G + + + R + E+ KA + +E
Sbjct: 118 VPICDLYPNGVFPK--GQECEYPPTQDGRTAAWRTTSEEKKALDQASEE 164
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 35.9 bits (83), Expect = 0.050
Identities = 27/191 (14%), Positives = 50/191 (26%), Gaps = 17/191 (8%)
Query: 466 DEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTIT 525
D DD + DE E+ T +E A ++
Sbjct: 11 DLDDYELDEEPGEE----------------ELTEEQEEEFRSAVATVRETLLGVPISEKE 54
Query: 526 ISEKPRKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIA 585
I++ D E S +K K K+ + + + + +
Sbjct: 55 IADTVWYYYFDVEKSVNYLLQKASSKAGAKEKQNTDSQKEKKQNKSKEALADAKDPLDES 114
Query: 586 KKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQ-DSDDGKTSKSKKPAKK 644
G + + E A K K + K+ Q +D + + +
Sbjct: 115 SNGIKNLSLNKNDEPAFQTNGEVKMKNSSESDNQPEKKKIKKQNPTDLVSVPEIFEQSNP 174
Query: 645 KETASTAVSPH 655
K V+ H
Sbjct: 175 KPVVHLVVTGH 185
Score = 33.9 bits (78), Expect = 0.20
Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 19/167 (11%)
Query: 463 ERDDEDDEDEDESTDEDFN-PDQAESDVAEEYDSNPTPT------------DSDEDSDAS 509
+ + +++ E+E T+E A + V E P D ++ +
Sbjct: 14 DYELDEEPGEEELTEEQEEEFRSAVATVRETLLGVPISEKEIADTVWYYYFDVEKSVNYL 73
Query: 510 EGTKKKKKEKSRKTITISEKPRKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMR 569
K K T S+K +K K KE+ + + N K N
Sbjct: 74 LQKASSKAGAKEKQNTDSQKEKKQNKSKEALADAKDPLDESSNGIKNLSL------NKND 127
Query: 570 EKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNE 616
E + N + ++ + K K+ V + E N
Sbjct: 128 EPAFQTNGEVKMKNSSESDNQPEKKKIKKQNPTDLVSVPEIFEQSNP 174
Score = 32.0 bits (73), Expect = 0.83
Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 13/151 (8%)
Query: 570 EKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQD 629
+++ G+ +E +W EK+ N L+ G ++
Sbjct: 39 ATVRETLLGVPISEKEIADT-VWYYYFDVEKS------------VNYLLQKASSKAGAKE 85
Query: 630 SDDGKTSKSKKPAKKKETASTAVSPHKVKSKEFIESNGSSSDSDDDKKASSKRKRDSDED 689
+ + K KK K KE + A P S + + +D + + ++S E
Sbjct: 86 KQNTDSQKEKKQNKSKEALADAKDPLDESSNGIKNLSLNKNDEPAFQTNGEVKMKNSSES 145
Query: 690 SKAKTKKKKEKSESESDSGESEKEKKSKSKP 720
KKK +K E ++S KP
Sbjct: 146 DNQPEKKKIKKQNPTDLVSVPEIFEQSNPKP 176
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.069
Identities = 11/66 (16%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 681 KRKRDSDEDSKAKTKKKKEKSESESDSGESEKEKKSKSKPKGDKSKSKSKKEDEIDDEEY 740
KR ++ D SK ++ +EK++ + + + ++ K+K + I D+ +
Sbjct: 96 KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ----------VEKNKINNRIADKAF 145
Query: 741 DEPVES 746
+ ++
Sbjct: 146 YQQPDA 151
Score = 33.2 bits (75), Expect = 0.19
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 502 SDEDSDASEGTKKKK-KEKSRKTITISEKPRKSKKDKESSGGSTKRKKKDKNAPKKPMSA 560
+ D E +K +E+ RK + + D S +++ + KK +
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRL--------QELDAASK----VMEQEWREKAKKDLEE 122
Query: 561 YMMWFNDMREKIKKDN 576
+ ++ EK K +N
Sbjct: 123 WNQRQSEQVEKNKINN 138
Score = 32.4 bits (73), Expect = 0.34
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 25/93 (26%)
Query: 583 EIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKPA 642
E +K W+ K E D ++++ E KA K+ + K+K
Sbjct: 85 ESIRK----WREEQRKRLQELDAASKVMEQEWRE--KAKKDLEEWNQRQSEQVEKNKINN 138
Query: 643 KKKETASTAVSPHKVKSKEFIESNGSSSDSDDD 675
+ + K F + D D
Sbjct: 139 RIAD-------------KAFYQ------QPDAD 152
Score = 31.7 bits (71), Expect = 0.66
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 14/89 (15%)
Query: 678 ASSKRKRDSDEDSKAKTKKKKEKSESESDSGESEKEKKSKSKPKGDKSKSKSKKEDEIDD 737
A + R E +K +E+ E + SK + + + K + ++++
Sbjct: 75 AQADRLTQEPE----SIRKWREEQRKRL----QELDAASKVM----EQEWREKAKKDLEE 122
Query: 738 --EEYDEPVESTPPSSDAGSDASSSEDDD 764
+ E VE ++ A + D
Sbjct: 123 WNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Score = 28.2 bits (62), Expect = 7.7
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 30/97 (30%)
Query: 447 EKEPDAYLARVKREA-----AERDDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTD 501
+EP++ R RE E D E E ++A+ D+ E
Sbjct: 81 TQEPES--IRKWREEQRKRLQELDAASKVMEQEWR------EKAKKDLEEWNQR------ 126
Query: 502 SDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKDKE 538
+ ++ EK++ I++K + D +
Sbjct: 127 -----------QSEQVEKNKINNRIADKAFYQQPDAD 152
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 35.1 bits (81), Expect = 0.100
Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 17/181 (9%)
Query: 462 AERDDED-DEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKS 520
A D D +D + DE D +EY+ + + + + +
Sbjct: 2 AYSDYSDGADDMPDFHDEGEFDDYLND---DEYELMNEVFPTLK--------AQLQDYQG 50
Query: 521 RKTITISEKPRKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGIS 580
+++ + D ES+ K+ K K PKKP++A + + + IS
Sbjct: 51 WDNLSLKLALFDNNFDLESTLAELKKTLKKKKTPKKPIAA-----ANGSANVTQKLANIS 105
Query: 581 FTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKK 640
++ + + E + + ++ K + + D KS
Sbjct: 106 ISQQRPNDRLPDWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSAL 165
Query: 641 P 641
P
Sbjct: 166 P 166
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 34.1 bits (77), Expect = 0.11
Identities = 18/143 (12%), Positives = 46/143 (32%), Gaps = 3/143 (2%)
Query: 435 PNYKEDFGSSDDEKEPD---AYLARVKREAAERDDEDDEDEDESTDEDFNPDQAESDVAE 491
+ + + E D A+LA+ + E A ++++ + S +E
Sbjct: 6 GFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQGGLAQPGPASGASE 65
Query: 492 EYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKDKESSGGSTKRKKKDK 551
+ + E + ++G + S + + ++ K K ++
Sbjct: 66 DMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQ 125
Query: 552 NAPKKPMSAYMMWFNDMREKIKK 574
+K W E+++K
Sbjct: 126 EWREKAKKDLEEWNQRQSEQVEK 148
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 34.4 bits (78), Expect = 0.18
Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 636 SKSKKPAKKKETASTAVSPHKVKSKEFIESNGSSSDSDDDKKASSKRKRDSDEDSKAKTK 695
+ K+ E +TAV ++K + + +K ++ ++ + + K K +
Sbjct: 798 MYEEASGKEVEKVATAVLSTTARAK-------ARAKKTKKEKGPNEEEKKKEHEEKEKER 850
Query: 696 KKKEKSESESDSGESEKEKKSKSK 719
+ +K E+ + E K S
Sbjct: 851 ETNKKGIKETKENDEEFYKNKYSS 874
Score = 34.0 bits (77), Expect = 0.19
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 635 TSKSKKPAKKKETASTAVSPHKVKSKEFIESNGSSSDSDDDKKASSKRKRDSDEDSKAKT 694
T+++K AKK + K K E + + +++ + K +++ E+ +
Sbjct: 818 TARAKARAKKTKKEKGPNEEEKKKEHE---------EKEKERETNKKGIKETKENDEEFY 868
Query: 695 KKKKEKSESESDS 707
K K + D+
Sbjct: 869 KNKYSSKPYKVDN 881
Score = 33.6 bits (76), Expect = 0.30
Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 6/91 (6%)
Query: 435 PNYKEDFGSSDDEKEPDAYLARVKREAAERDDEDDEDEDESTDEDFNPDQAESDVAEEYD 494
P E+ + EK A L+ R A E ++ ++ E +
Sbjct: 796 PRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETN-- 853
Query: 495 SNPTPTDSDEDSDASEGTKKKKKEKSRKTIT 525
E + E K K +
Sbjct: 854 ----KKGIKETKENDEEFYKNKYSSKPYKVD 880
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker,
histone H3; bromodomain, remodeler, acetylation,
transcription; HET: ALY; 2.20A {Saccharomyces
cerevisiae} PDB: 2r0v_A*
Length = 361
Score = 33.3 bits (75), Expect = 0.28
Identities = 9/75 (12%), Positives = 22/75 (29%)
Query: 675 DKKASSKRKRDSDEDSKAKTKKKKEKSESESDSGESEKEKKSKSKPKGDKSKSKSKKEDE 734
D ++++ K KK K +E+ + + PK +
Sbjct: 3 DPFTTARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQEKTPHVDYNAP 62
Query: 735 IDDEEYDEPVESTPP 749
++ + + P
Sbjct: 63 LNPKSELFLDDWHIP 77
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 33.5 bits (76), Expect = 0.31
Identities = 13/72 (18%), Positives = 24/72 (33%)
Query: 635 TSKSKKPAKKKETASTAVSPHKVKSKEFIESNGSSSDSDDDKKASSKRKRDSDEDSKAKT 694
+ ST+ + + SS++ D + RKR DE
Sbjct: 563 AKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDEKENLSA 622
Query: 695 KKKKEKSESESD 706
K+ + + + E D
Sbjct: 623 KRSRIEQKEELD 634
Score = 31.2 bits (70), Expect = 1.6
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 651 AVSPHKVKSKEFIESNGSSSDSDDDKKASSKRKRDSDEDSKAKTKKKKEKSESESDSGES 710
+P KV K+ E S + D A ++D +E S + +D E
Sbjct: 548 GDAPEKVGPKQ-AEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEE 606
Query: 711 EKEKKSKSKPKGDKSKSKSKKEDEIDDEE 739
E+ +K K K + S +S+ E + + ++
Sbjct: 607 ERSRKRKLDEKENLSAKRSRIEQKEELDD 635
Score = 30.5 bits (68), Expect = 2.4
Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 3/112 (2%)
Query: 445 DDEKEPDAYLARVKREAAERDDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDE 504
DD + L + D + E ++ ++ ++ + S+ S
Sbjct: 520 DDFLQDYTLLINILHSEDLGKDVEFEVVGDAPEKVGPKQAEDAAKSITNGSDDGAQPSTS 579
Query: 505 DSDASEGTKK-KKKEKSRKTITISEKPRKSKKDK--ESSGGSTKRKKKDKNA 553
+ + E+ + +S+K K E S KR + ++
Sbjct: 580 TAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDEKENLSAKRSRIEQKE 631
Score = 29.7 bits (66), Expect = 4.2
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 631 DDGKTSKSKKPAKKKETASTAVSPHKVKSKEFIESNGSSSDSDDDKKASSKRKRDSDEDS 690
D K+ + + + STA V + E + S++ +++ S KRK D ++++
Sbjct: 561 DAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLD-EKEN 619
Query: 691 KAKTKKKKEKSESESD 706
+ + + E+ E D
Sbjct: 620 LSAKRSRIEQKEELDD 635
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 33.3 bits (76), Expect = 0.34
Identities = 30/245 (12%), Positives = 84/245 (34%), Gaps = 16/245 (6%)
Query: 510 EGTKKKKKEKSRKTITISEKPRKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMR 569
E ++ + + +K + +++E++ + +K + K M ++ D
Sbjct: 940 EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999
Query: 570 EKIKKDN---------PGISFTEIAKKGGELWKTVSSKEK--AEYDEKVNKAKEDYNEAL 618
K+ K+ + E +K L K + E +E + ++ K ++ E
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059
Query: 619 KAYKESGG-GQDSDDGKTSKSKKPAKKKETASTAVSPHKVKSKEFIESNGSSSDSDDDKK 677
K ++ G D + + A+ K + + + +++ +
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR 1119
Query: 678 ASSKR----KRDSDEDSKAKTKKKKEKSESESDSGESEKEKKSKSKPKGDKSKSKSKKED 733
+ D + + A+ K +K+K + + + E + + + +
Sbjct: 1120 ELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179
Query: 734 EIDDE 738
+ DD+
Sbjct: 1180 DDDDK 1184
Score = 32.5 bits (74), Expect = 0.69
Identities = 34/224 (15%), Positives = 79/224 (35%), Gaps = 12/224 (5%)
Query: 514 KKKKEKSRKTITISEKPRKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIK 573
+ K E+ ++T +K K+ E +K + + +MR ++
Sbjct: 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919
Query: 574 KDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDG 633
E+ + E+ + +E+ E +++ K+ + + +E ++
Sbjct: 920 A-----KKQELEEILHEMEARI--EEEEERSQQLQAEKKKMQQQMLDLEE-----QLEEE 967
Query: 634 KTSKSKKPAKKKETASTAVSPHKVKSKEFIESNGSSSDSDDDKKASSKRKRDSDEDSKAK 693
+ ++ K +K ++N + + ++ S + E+ +
Sbjct: 968 EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA 1027
Query: 694 TKKKKEKSESESDSGESEKEKKSKSKPKGDKSKSKSKKEDEIDD 737
K K++ ES E E K + K + + K K K E E D
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071
Score = 31.7 bits (72), Expect = 1.0
Identities = 20/146 (13%), Positives = 57/146 (39%), Gaps = 5/146 (3%)
Query: 598 KEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKPAKKK-ETASTAVSPHK 656
+E+ +K+ K + +K ++ + + K +K +K +++ +T ++ +
Sbjct: 965 EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024
Query: 657 VKSKEFIESNGSSSDSDDDKKASSKRKRDSDEDSKAKTKKKKEKSESESDSGESEKEKKS 716
K+K + + + + +E S+ + +K K K E ES + +
Sbjct: 1025 EKAKNLTKLKNKHESMISELE----VRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080
Query: 717 KSKPKGDKSKSKSKKEDEIDDEEYDE 742
+ +K ++E + ++
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLED 1106
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 32.7 bits (75), Expect = 0.42
Identities = 6/34 (17%), Positives = 20/34 (58%)
Query: 446 DEKEPDAYLARVKREAAERDDEDDEDEDESTDED 479
+E + +VK++ E + +++E+ +E+ ++
Sbjct: 229 PVEEIKKLIEKVKKKLNEENKKEEENREETKEKQ 262
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 33.0 bits (74), Expect = 0.53
Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 38/228 (16%)
Query: 555 KKPMSAYMMWFNDMREKIK---------KDNPGISFTEIAKKGGELWKTVSSKEKA---- 601
+P Y F M+EKI ++NP + ++ K + TV
Sbjct: 205 MEPSKEYEPIFGLMQEKIYISKIVVEFLQNNPDAVYEDLINK---IETTVPPSTINVNRF 261
Query: 602 ------EYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKPAKKKETASTAVSPH 655
+ + V E Y+EA + + ++ +
Sbjct: 262 TEDSLLRHAQFVVSQVESYDEAKDDDETPIFLSPCMRALIHLAGVSLGQRRATRRVMGAT 321
Query: 656 KVKSK---------------EFIESNGSSSDSDDDKKASSKRKRDSDEDSKAKTKKKKEK 700
K K K + S +DK+ + KR+R + + + K K
Sbjct: 322 KEKDKAPTKATTTKLVYQIFDTFFSEQIEKYDKEDKENAMKRRRCGVCEVCQQPECGKCK 381
Query: 701 -SESESDSGESEKEKKSKSKPKGDKSKSKSKKEDEIDDEEYDEPVEST 747
+ G + + K++ K + K +DE D++ E
Sbjct: 382 ACKDMVKFGGTGRSKQACLKRRCPNLAVKEADDDEEADDDVSEMPSPK 429
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 32.0 bits (73), Expect = 0.78
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 15/81 (18%)
Query: 677 KASSKRKRDSDEDSKAKTKKKKEKSESESDSGESEKEKKSKSKPKGDKSKSKSKKE---- 732
K K +E+ K + KK +EK + + + E+ + + K K + +E
Sbjct: 211 KEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEEL 270
Query: 733 -----------DEIDDEEYDE 742
+I EEY+
Sbjct: 271 NKTKPLWTRNPSDITQEEYNA 291
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 31.4 bits (71), Expect = 0.86
Identities = 11/138 (7%), Positives = 39/138 (28%), Gaps = 11/138 (7%)
Query: 606 KVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKPAKKKETASTAVSPHKVKSKEFIES 665
+ E Y+EA+ + + K + + K K +
Sbjct: 80 QCQLEMESYDEAIANLQ-----------RAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI 128
Query: 666 NGSSSDSDDDKKASSKRKRDSDEDSKAKTKKKKEKSESESDSGESEKEKKSKSKPKGDKS 725
+ + + R ++ + + + ++ + + +++ K
Sbjct: 129 EERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMAD 188
Query: 726 KSKSKKEDEIDDEEYDEP 743
+ + + ++ D P
Sbjct: 189 MDELFSQVDEKRKKRDIP 206
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 31.5 bits (72), Expect = 0.90
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 446 DEKEPDAYLARVKREAAERDDEDDEDEDESTDE 478
+KE + + + + E A+ + E E E + D+
Sbjct: 229 KQKEVEQLIKKHEEEEAKAEREKKEKEQKEKDK 261
>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo
4YL)-propionic acid, PSI-2 community, structural
genomics, structure initiative; HET: DI6; 1.97A
{Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*
Length = 416
Score = 31.4 bits (71), Expect = 1.0
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 578 GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALK-----AYKESGGGQDSDD 632
G+ + EIA+KGG + TV + A D+ A ++ +SG G +D
Sbjct: 91 GVPYAEIARKGGGIISTVRATRAASEDQLFELALPRVKSLIREGVTTVEIKSGYGLTLED 150
>3h0g_F DNA-directed RNA polymerases I, II, and III subunit rpabc2;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe}
Length = 142
Score = 30.4 bits (68), Expect = 1.1
Identities = 15/67 (22%), Positives = 25/67 (37%)
Query: 465 DDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTI 524
E++ DE E DE+ Q S E + T + + S K+ + +
Sbjct: 16 VMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQSGKAVAKEDRTTTPYM 75
Query: 525 TISEKPR 531
T E+ R
Sbjct: 76 TKYERAR 82
Score = 28.5 bits (63), Expect = 4.3
Identities = 9/70 (12%), Positives = 20/70 (28%)
Query: 465 DDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTI 524
D E+DE + E S + E S + ++
Sbjct: 3 DYEEDEAFGMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQSGK 62
Query: 525 TISEKPRKSK 534
++++ R +
Sbjct: 63 AVAKEDRTTT 72
>1qkl_A RPB6, DNA-directed RNA polymerase II 14.4 KD polypeptide;
transcription; NMR {Homo sapiens} SCOP: a.143.1.2
Length = 127
Score = 29.9 bits (67), Expect = 1.3
Identities = 10/63 (15%), Positives = 28/63 (44%)
Query: 469 DEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISE 528
++ED +DF+ + + + + ++ ++ E + E + +K + +T E
Sbjct: 2 SDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYE 61
Query: 529 KPR 531
+ R
Sbjct: 62 RAR 64
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F
1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F*
1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F
1y77_F* ...
Length = 155
Score = 30.4 bits (68), Expect = 1.3
Identities = 12/71 (16%), Positives = 25/71 (35%)
Query: 465 DDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTI 524
D E+ ++ EDF+ + + E ++ + + + T E ++
Sbjct: 3 DYEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHE 62
Query: 525 TISEKPRKSKK 535
I K K K
Sbjct: 63 QIRRKTLKEKA 73
Score = 30.0 bits (67), Expect = 1.8
Identities = 11/70 (15%), Positives = 29/70 (41%)
Query: 465 DDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTI 524
++ +D D + +DE+ ++ + E D+N + + ++ + K+ K
Sbjct: 13 ENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQIRRKTLKEK 72
Query: 525 TISEKPRKSK 534
I + R +
Sbjct: 73 AIPKDQRATT 82
Score = 29.3 bits (65), Expect = 3.2
Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 10/97 (10%)
Query: 437 YKEDFGSSDDEKEPDAYLARVKREAAERDDEDDEDEDESTDEDFNPDQAESDVAEEYDSN 496
Y+E F ++ E + DE+ +E + D + +
Sbjct: 4 YEEAFNDGNENFEDF--------DVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGP 55
Query: 497 PTPTDSDEDSDASEGTKK--KKKEKSRKTITISEKPR 531
++ + K K + + +T E+ R
Sbjct: 56 EDFQQHEQIRRKTLKEKAIPKDQRATTPYMTKYERAR 92
Score = 27.7 bits (61), Expect = 8.8
Identities = 10/75 (13%), Positives = 29/75 (38%)
Query: 463 ERDDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRK 522
E ++ +E+ ++ E F+ ++ + + D T + G + ++ + +
Sbjct: 6 EAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQIR 65
Query: 523 TITISEKPRKSKKDK 537
T+ EK +
Sbjct: 66 RKTLKEKAIPKDQRA 80
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 31.3 bits (71), Expect = 1.5
Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 2/143 (1%)
Query: 481 NPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKDKESS 540
A D+ N D+ + K+ K ++ + + + +
Sbjct: 88 KFADAMFDL-SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146
Query: 541 GGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEK 600
++ K++ M+++ F D + E+ L+K S +
Sbjct: 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKR-SPESY 205
Query: 601 AEYDEKVNKAKEDYNEALKAYKE 623
+ DE KA + E L E
Sbjct: 206 DKADESFTKAARLFEEQLDKNNE 228
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 30.6 bits (69), Expect = 1.6
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 4/102 (3%)
Query: 456 RVKREAAERDDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDED----SDASEG 511
RV+ E A D D + +ED P + D DE+ A +
Sbjct: 41 RVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDD 100
Query: 512 TKKKKKEKSRKTITISEKPRKSKKDKESSGGSTKRKKKDKNA 553
+ K + + ++ ++ G S +++
Sbjct: 101 NSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILK 142
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 30.5 bits (68), Expect = 1.7
Identities = 26/143 (18%), Positives = 44/143 (30%), Gaps = 11/143 (7%)
Query: 584 IAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKPAK 643
I G E V +E E+ +K + G+ + + A
Sbjct: 77 IRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEAAL 136
Query: 644 KKETASTAVSPHKVKSKEFIESNGSSSDSDDDKKASSKRKRDSDEDSKAKTKKKKEKSES 703
+ + S S+E ++ S D SS D D KE++
Sbjct: 137 ESPRPALVRSASSDTSEEL--NSQDSPPKQDSTAPSSTSSSDPILDFNISLAMAKERAH- 193
Query: 704 ESDSGESEKEKKSKSKPKGDKSK 726
+++ SK P+ D SK
Sbjct: 194 --------QKRSSKRAPQMDWSK 208
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 30.3 bits (67), Expect = 2.9
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 12/60 (20%)
Query: 460 EAAERDDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEK 519
A E + E+DE+E + +++ D + D D +S + + E+
Sbjct: 363 AALEFEFEEDEEEADEDEDEEEDDDHGLE------------DDDGESAEEQDDFAGRPEQ 410
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 3.2
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 19/39 (48%)
Query: 158 ESLIEMRFYIPTNEIAGDTDPVEAFKDSVMNQASVINAT 196
++ ++ Y D+ P A I AT
Sbjct: 26 QA--SLKLYAD------DSAP-----------ALAIKAT 45
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 29.8 bits (68), Expect = 3.5
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 578 GISFTEIAK-KGGELWKTVSSKEKAEY------DEKVNKAKEDYNEALKAYKESGG 626
G++ +IA+ G ++ T ++E + E N + +Y + +K Y G
Sbjct: 184 GLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKG 239
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
3.30A {Homo sapiens} SCOP: h.1.25.2
Length = 180
Score = 29.2 bits (65), Expect = 3.6
Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 33/162 (20%)
Query: 568 MREKIK-KDNPGISFTEIAKKGGELWKTVSSKEKAEYD--EKVNKAKEDYNEALKAYKES 624
+ + + + G+ F E+ +L V ++ YD KV K + + + +
Sbjct: 46 LSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105
Query: 625 GGGQDSDDGKTSKSKKPAKKKETASTAVSPHKVKSKEFIESNGSSSDSDDDKKASSKRKR 684
G K K+P ++ S+D+ ++ K
Sbjct: 106 RG----------KFKRPTLRRV--------------------RISADAMMQALLGARAKE 135
Query: 685 DSDEDSKAKTKKKKEKSESESDSGESEKEKKSKSKPKGDKSK 726
D + K KK++ + + G+ K + S +G K K
Sbjct: 136 SLDLRAHLKQVKKEDTEKENREVGDWRKNIDALSGMEGRKKK 177
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 29.5 bits (67), Expect = 3.8
Identities = 5/50 (10%), Positives = 15/50 (30%), Gaps = 7/50 (14%)
Query: 578 GISFTEIAK-KGGELWKTVSSKEKAEY------DEKVNKAKEDYNEALKA 620
G F ++++ L + + E ++ + E +
Sbjct: 158 GHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVME 207
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 29.7 bits (67), Expect = 3.8
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 445 DDEKEPDAYLARVKREAAERDDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDE 504
+E + + V + ++ +D +E TDE+ E + E +P P S+E
Sbjct: 316 SEEDDVVDEIREVFSTRGRGELDELDDMEELTDEE-----EEDEEEEAESQSPEPETSEE 370
Query: 505 DSDASEGTKKKKK 517
+ + E + K
Sbjct: 371 EKEDKELADELSK 383
>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28;
AT1G70830, BET V1-like, structural genomics, protein
structure initiative; NMR {Arabidopsis thaliana}
Length = 166
Score = 28.8 bits (64), Expect = 4.1
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 652 VSPHKVKSKEFIESNGSSSDS-------DDDKKASSKRKRDSDEDSKAKTKKKKEKSESE 704
SP ++ + E + + S D + +K + ++ E K + + +
Sbjct: 46 ASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVAKERIEAVEPDKNLITFRVIEGDLM 105
Query: 705 SDSGESEKEKKSKSKPKGDKSKSKSKKEDEIDDEEYDEP 743
+ + KP G S E E EE P
Sbjct: 106 KEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAHP 144
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 29.5 bits (67), Expect = 4.2
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 583 EIAK-KGGELWKTVSSKEKAEY------DEKVNKAKEDYNEALKAYKESGGGQD 629
+++K + T SS EK+ + D +N E LK E G D
Sbjct: 182 QLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQ--EYPEGVD 233
>3pnr_B Pbicp-C; immunoglobulin fold, hydrolase-hydrolase inhibitor
complex; 2.60A {Plasmodium berghei}
Length = 187
Score = 28.6 bits (63), Expect = 5.8
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 512 TKKKKKEKSRKTITISEKPRKSKKDKESSGGSTKRK------KKDKNAPKKPMSAYMMWF 565
TK KK + I++++ P+K K D+ S + R+ K+ + PKKP +
Sbjct: 88 TKLTKKSFFSEEISVTQ-PKKYKIDEHDSSKNVNREIESPEQKESDSKPKKPQMQLLGGP 146
Query: 566 NDMREKIKKDNPGISF 581
+ MR IK PG +
Sbjct: 147 DRMRSVIKGHKPGKYY 162
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 28.8 bits (63), Expect = 7.3
Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 463 ERDDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRK 522
E + + + + + N + + +N D + + D +E +++E+ K
Sbjct: 297 ESNSIVSDVDSSYSSSENNSNYNSYE-----SNNSAYNDENSNVDTNEYDDNEEEEEGAK 351
Query: 523 T 523
+
Sbjct: 352 S 352
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 28.7 bits (64), Expect = 7.4
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 465 DDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSD 507
D + D ++ + NPDQA+ D +D DSD+D D
Sbjct: 191 DGDGIGDACDNCPQKSNPDQADVD----HDFVGDACDSDQDQD 229
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA
topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus
aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Length = 692
Score = 28.8 bits (65), Expect = 8.2
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 463 ERDDEDDEDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRK 522
E +++ + D + DV E + D +E + + E
Sbjct: 157 EHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLDFAELPQSRINE---- 212
Query: 523 TITISEKPRKS 533
I+ + R+S
Sbjct: 213 -RNITSEMRES 222
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H
3o58_H 3o5h_H 3u5e_G 3u5i_G
Length = 256
Score = 28.4 bits (62), Expect = 9.0
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 594 TVSSKEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKPAKKKETA 648
V ++++A + V+ ++ + K+ GG + +K K AK ++A
Sbjct: 202 EVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGNKAQAKMDKRAKNSDSA 256
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.128 0.357
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,364,724
Number of extensions: 703722
Number of successful extensions: 2349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2167
Number of HSP's successfully gapped: 230
Length of query: 764
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 663
Effective length of database: 3,881,772
Effective search space: 2573614836
Effective search space used: 2573614836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 61 (28.0 bits)