RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2633
(764 letters)
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 238
Score = 277 bits (710), Expect = 6e-89
Identities = 94/237 (39%), Positives = 153/237 (64%), Gaps = 4/237 (1%)
Query: 196 TGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNF 255
GDAI F ++ TPRGRYDI I+ + +L GKT++YK+ + R+ +LP D +
Sbjct: 2 AGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHM 61
Query: 256 FVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVM 315
V++++PP++QGQT Y FL L F +DE +E++L +++ +E Y+ KL K+ T+ V+
Sbjct: 62 MVMAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVL 121
Query: 316 AKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEI 375
+ ++K + +R++ VPG ++ AV+CS+KA GY+YPL+ F F+ KP ++I F ++
Sbjct: 122 SHVLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSDV 181
Query: 376 ATVNFARSGG---STRSFDFEIELKSGVL-HTFSSIEKEEYGKLFDFIREKKLRVKN 428
+ VN +R+G S+R+FD E+ L+S TF++I KEE L F++ K LRVKN
Sbjct: 182 SMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKSKNLRVKN 238
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 88.4 bits (219), Expect = 6e-22
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 529 KPRKSKKDKESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKG 588
PR+ KK RKKKD NAPK+ +SAYM + N+ R+ ++ +NP I+F ++ KK
Sbjct: 3 TPREPKKRT-------TRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKL 55
Query: 589 GELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYKES 624
GE WK ++ +EK Y+ K K+ Y + Y +
Sbjct: 56 GEKWKALTPEEKQPYEAKAQADKKRYESEKELYNAT 91
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster
(Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 87.6 bits (217), Expect = 9e-22
Identities = 30/74 (40%), Positives = 50/74 (67%)
Query: 552 NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAK 611
NAPK+P SA+ ++ ++ R KIK ++PG+S ++AKK GE+W ++ +K Y++K K K
Sbjct: 1 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 60
Query: 612 EDYNEALKAYKESG 625
E Y + + AY+ G
Sbjct: 61 EKYEKDIAAYRAKG 74
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 83.8 bits (207), Expect = 3e-20
Identities = 22/79 (27%), Positives = 44/79 (55%)
Query: 545 KRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYD 604
K+ KK + PKKP++ Y +F + R K K +P +S ++ K + +K + K+K +Y
Sbjct: 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYI 61
Query: 605 EKVNKAKEDYNEALKAYKE 623
+ + K+++ L ++E
Sbjct: 62 QDFQREKQEFERNLARFRE 80
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Length = 73
Score = 81.8 bits (202), Expect = 9e-20
Identities = 38/74 (51%), Positives = 58/74 (78%), Gaps = 2/74 (2%)
Query: 552 NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAK 611
+ PK+P+SAYM+W N RE IK++NPGI TE+AK+GGELW+ + K+K+E++ K KAK
Sbjct: 2 DKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAK 59
Query: 612 EDYNEALKAYKESG 625
+DY+ A+K ++ +G
Sbjct: 60 DDYDRAVKEFEANG 73
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 76.9 bits (189), Expect = 7e-18
Identities = 18/80 (22%), Positives = 38/80 (47%)
Query: 543 STKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAE 602
S + K PK+P+SA ++ + R +++++ P +S +E+ + +W +S K+KA+
Sbjct: 10 SQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAK 69
Query: 603 YDEKVNKAKEDYNEALKAYK 622
Y + K
Sbjct: 70 YKAREAALKAQSERKSGPSS 89
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 74.1 bits (182), Expect = 5e-17
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 552 NAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAK 611
+ K+PM+A+M+W R K+ ++NP + +EI+K+ G WK +S EK + ++ + +
Sbjct: 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 60
Query: 612 EDYNEALKAYK 622
+ + YK
Sbjct: 61 ALHMKEHPDYK 71
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 74.5 bits (183), Expect = 7e-17
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 2/98 (2%)
Query: 547 KKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEK 606
K PM+ Y + ++ + ++ E + G W+ +S +K Y +
Sbjct: 2 SSGSSGPKKPPMNGYQKFSQELLSNGELNHL--PLKERMVEIGSRWQRISQSQKEHYKKL 59
Query: 607 VNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKPAKK 644
+ + Y L + +S QD K S K
Sbjct: 60 AEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSG 97
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 73.3 bits (180), Expect = 1e-16
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 551 KNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKA 610
++ K+PM+A+++W D R K+ +NP + +EI+K+ G WK ++ EK + ++ K
Sbjct: 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKL 61
Query: 611 KEDYNEALKAYK 622
+ + E YK
Sbjct: 62 QAMHREKYPNYK 73
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 72.6 bits (178), Expect = 1e-16
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 554 PKKPMSAYMMWFNDMREKIKKDNP--GISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAK 611
P+ MS+Y + RE+ KK +P ++F+E +KK E WKT+S+KEK ++++ K
Sbjct: 2 PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 61
Query: 612 EDYNEALKAY 621
Y +K Y
Sbjct: 62 ARYEREMKTY 71
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 69.9 bits (171), Expect = 2e-15
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 555 KKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDY 614
KKP++A+M++ +MR + ++ I + G W +S +E+A+Y E K ++ +
Sbjct: 4 KKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLH 63
Query: 615 NEALKAYKESGGGQDSDDGKTSKSKKPAKKKE 646
+ + + + KK +K+E
Sbjct: 64 MQLYPGWSA----------RDNYGKKKKRKRE 85
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 66.8 bits (163), Expect = 1e-14
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 555 KKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDY 614
K+PM+A+M+W D R KI + P + + I+K G WK +++ EK Y E+ + + +
Sbjct: 4 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQH 63
Query: 615 NEALKAY 621
E Y
Sbjct: 64 LEKYPDY 70
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 67.7 bits (165), Expect = 2e-14
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 539 SSGGSTKRK-KKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSS 597
SSG S + K K D K P ++Y ++ ++ +K + TE + WK +S
Sbjct: 2 SSGSSGQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQ 57
Query: 598 KEKAEYDEKVNKAKEDYNEALKAYKESGGGQDSDDGKTSKSKKPAKKKETAS 649
KEK Y +K ++ K+DY L + ES + + + +K +S
Sbjct: 58 KEKDAYHKKCDQKKKDYEVELLRFLES--LPEEEQQRVLGEEKMLNISGPSS 107
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 33.3 bits (76), Expect = 0.036
Identities = 10/62 (16%), Positives = 28/62 (45%)
Query: 470 EDEDESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEK 529
++ED +DF+ + + + + ++ ++ E + E + +K + +T E+
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYER 62
Query: 530 PR 531
R
Sbjct: 63 AR 64
>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 349
Score = 33.1 bits (75), Expect = 0.12
Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 653 SPHKVKSKEFI------------ESNGSSSDSDDDKKASSKRKRDSDEDSKAKTKKKKEK 700
SP ++ K I S + +++ S+ +E ++ + ++ +E+
Sbjct: 139 SPEDLRGKILIKNKKNQFSGPTSSSKDTGGEAEGSSPPSAPAVWAGEEGTELEEEEVEEE 198
Query: 701 SESESDSGESEKEKKSKSKPKGDKSKSKSKKE 732
E ES + + E+ KK +S + + +E
Sbjct: 199 EEEESGNLDEEEIKKMQSDEGTAGLEVTAYEE 230
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 28.1 bits (61), Expect = 4.3
Identities = 7/53 (13%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 566 NDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEAL 618
+++ EK KK ++ ++ + +++EK + +K+ + ++ + +
Sbjct: 1 DELLEKAKK----------VREAWDVLRNATTREKNKAIKKIAEKLDERRKEI 43
>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 327
Score = 27.7 bits (61), Expect = 5.3
Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 9/99 (9%)
Query: 653 SPHKVKSK---------EFIESNGSSSDSDDDKKASSKRKRDSDEDSKAKTKKKKEKSES 703
SP ++K K + + G + D + DE +++ + K ++ +
Sbjct: 129 SPEQLKGKILLKGKKLGGLLPAGGENGSEATDVSDEVEAAEMEDEAVRSQVQHKPKEDKL 188
Query: 704 ESDSGESEKEKKSKSKPKGDKSKSKSKKEDEIDDEEYDE 742
+ S+ KS G S + + + + E
Sbjct: 189 KLVPELSDMIIYCKSVHFGGFSSPGTSGQAFYEMASFSE 227
>d1y14b2 d.230.1.1 (B:1-80) N-terminal, heterodimerisation domain of
RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 80
Score = 25.8 bits (57), Expect = 6.0
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 9/58 (15%)
Query: 292 EQELKEKYEGKLDKELSGPTYEVM-AKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKA 348
+ +L E+ EG + Y + + + R +P G++ Y+A
Sbjct: 27 KTKLLEEVEGSCTGKFG---YILCVLDYDNIDIQRGRILPT-----DGSAEFNVKYRA 76
>d1go3e2 d.230.1.1 (E:1-78) N-terminal, heterodimerisation domain of
RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 78
Score = 25.4 bits (56), Expect = 6.7
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 292 EQELKEKYEGKLDKEL 307
++ L EKYEG+LDK++
Sbjct: 27 KKILMEKYEGRLDKDV 42
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase
associated protein, CAP {Dictyostelium discoideum
[TaxId: 44689]}
Length = 176
Score = 27.0 bits (60), Expect = 6.9
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 543 STKRKKKDKNAPK---KPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGEL-WKTVSSK 598
+++ KK + KP++ + +R+ + + + I++ G L W V
Sbjct: 48 ASQSKKPSQETLLELIKPLNNFAAEVGKIRDSNRSSKFFNNLSAISESIGFLSWVVVEPT 107
Query: 599 EKAEYDEKVNKAKEDYNEALKAYKES 624
E A+ N LK +K
Sbjct: 108 PGPHVAEMRGSAEFYTNRILKEFKGV 133
>d1ntha_ c.1.25.1 (A:) Monomethylamine methyltransferase MtmB
{Archaeon Methanosarcina barkeri [TaxId: 2208]}
Length = 457
Score = 27.3 bits (60), Expect = 7.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 280 QDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMK 320
QD+ M++P ELK+KY E ++M K+ K
Sbjct: 23 QDDWDLMKIPMKAMELKQKYGLDFKGEFIPTDKDMMEKLFK 63
>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}
Length = 524
Score = 27.2 bits (59), Expect = 8.1
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 8/88 (9%)
Query: 546 RKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFT-----EIAKKGGELWKTVSSKEK 600
K N + +W D+R + FT + GE +S + +
Sbjct: 355 TKGTVANPNQDKNCTDDVWVYDLRTNMPSFGKRTPFTDEHLQPFERVYGEDPHGLSPRTE 414
Query: 601 AEYDEKVNK---AKEDYNEALKAYKESG 625
E+ + A + N+ + +
Sbjct: 415 GEWSFNAEETEVADSEENKNTDQHLATS 442
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.128 0.357
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,800,041
Number of extensions: 138371
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 39
Length of query: 764
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 672
Effective length of database: 1,144,436
Effective search space: 769060992
Effective search space used: 769060992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.2 bits)