BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2634
(749 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 684 GSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLL--ERGR 741
G LY S NHSC PN I F + +L A RDI G+E+ I Y+D + ER +
Sbjct: 230 GVGLYPSISLLNHSCDPNCSIVFNGPHLLLR--AVRDIEVGEELTICYLDMLMTSEERRK 287
Query: 742 EKRNNY 747
+ R+ Y
Sbjct: 288 QLRDQY 293
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 684 GSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLL--ERGR 741
G LY S NHSC PN I F + +L A RDI G+E+ I Y+D + ER +
Sbjct: 194 GVGLYPSISLLNHSCDPNCSIVFNGPHLLLR--AVRDIEVGEELTICYLDMLMTSEERRK 251
Query: 742 EKRNNY 747
+ R+ Y
Sbjct: 252 QLRDQY 257
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 684 GSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLL--ERGR 741
G LY S NHSC PN I F + +L A RDI G+E+ I Y+D + ER +
Sbjct: 194 GVGLYPSISLLNHSCDPNCSIVFNGPHLLLR--AVRDIEVGEELTICYLDMLMTSEERRK 251
Query: 742 EKRNNY 747
+ R+ Y
Sbjct: 252 QLRDQY 257
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 684 GSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLL--ERGR 741
G LY S NHSC PN I F + +L A RDI G+E+ I Y+D + ER +
Sbjct: 195 GVGLYPSISLLNHSCDPNCSIVFNGPHLLLR--AVRDIEVGEELTICYLDMLMTSEERRK 252
Query: 742 EKRNNY 747
+ R+ Y
Sbjct: 253 QLRDQY 258
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 684 GSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLL--ERGR 741
G LY S NHSC PN I F + +L A RDI G+E+ I Y+D + ER +
Sbjct: 196 GVGLYPSISLLNHSCDPNCSIVFNGPHLLLR--AVRDIEVGEELTICYLDMLMTSEERRK 253
Query: 742 EKRNNY 747
+ R+ Y
Sbjct: 254 QLRDQY 259
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 684 GSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLL--ERGR 741
G LY S NHSC PN I F + +L A RDI G+E+ I Y+D ER +
Sbjct: 195 GVGLYPSISLLNHSCDPNCSIVFNGPHLLLR--AVRDIEVGEELTICYLDXLXTSEERRK 252
Query: 742 EKRNNY 747
+ R+ Y
Sbjct: 253 QLRDQY 258
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 678 EFLNNEGSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLL 737
E L++ GSA++ + NHSC PN + Y + + A ++I GDE+ SY+D L
Sbjct: 189 EELSHLGSAIFPDVALMNHSCCPN--VIVTYKGTLAEVRAVQEIHPGDEVFTSYID---L 243
Query: 738 ERGREKRNNYLR 749
E RN+ LR
Sbjct: 244 LYPTEDRNDRLR 255
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 678 EFLNNEGSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLL 737
E L++ GSA++ + NHSC PN + Y + + A ++I G+E+ SY+D L
Sbjct: 189 EELSHLGSAIFPDVALMNHSCCPN--VIVTYKGTLAEVRAVQEIKPGEEVFTSYID---L 243
Query: 738 ERGREKRNNYLR 749
E RN+ LR
Sbjct: 244 LYPTEDRNDRLR 255
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 678 EFLNNEGSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLL 737
E L++ GSA++ + NHSC PN + Y + + A ++I G+E+ SY+D L
Sbjct: 189 EELSHLGSAIFPDVALMNHSCCPN--VIVTYKGTLAEVRAVQEIKPGEEVFTSYID---L 243
Query: 738 ERGREKRNNYLR 749
E RN+ LR
Sbjct: 244 LYPTEDRNDRLR 255
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 678 EFLNNEGSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLL 737
E L++ GSA++ + NHSC PN + Y + + A ++I G+E+ SY+D L
Sbjct: 189 EELSHLGSAIFPDVALMNHSCCPN--VIVTYKGTLAEVRAVQEIKPGEEVFTSYID---L 243
Query: 738 ERGREKRNNYLR 749
E RN+ LR
Sbjct: 244 LYPTEDRNDRLR 255
>pdb|1N3J|A Chain A, Structure And Substrate Of A Histone H3 Lysine
Methyltransferase From Paramecium Bursaria Chlorella
Virus 1
pdb|1N3J|B Chain B, Structure And Substrate Of A Histone H3 Lysine
Methyltransferase From Paramecium Bursaria Chlorella
Virus 1
pdb|2G46|A Chain A, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|2G46|B Chain B, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|3KMA|A Chain A, Crystal Structure Of Vset Under Condition A
pdb|3KMA|B Chain B, Crystal Structure Of Vset Under Condition A
pdb|3KMJ|A Chain A, Crystal Structure Of Vset Under Condition B
pdb|3KMT|A Chain A, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
pdb|3KMT|B Chain B, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
pdb|3KMT|C Chain C, Crystal Structure Of VsetSAHH3 TERNARY COMPLEX
Length = 119
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 695 NHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLLERGREKRN 745
NHS PNA + + + + IA G+EI ISY D+ L R R +N
Sbjct: 69 NHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRLTQN 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,056,595
Number of Sequences: 62578
Number of extensions: 849463
Number of successful extensions: 1795
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1776
Number of HSP's gapped (non-prelim): 16
length of query: 749
length of database: 14,973,337
effective HSP length: 106
effective length of query: 643
effective length of database: 8,340,069
effective search space: 5362664367
effective search space used: 5362664367
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)