RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2634
(749 letters)
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 73.8 bits (180), Expect = 6e-14
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 678 EFLNNEGSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDEDLL 737
+ G LY S NHSC PN I F + L + A RDI G+E+ I Y+D +
Sbjct: 189 AEMQEVGVGLYPSISLLNHSCDPNCSIVF--NGPHLLLRAVRDIEVGEELTICYLD---M 243
Query: 738 ERGREKRNNYLR 749
E+R LR
Sbjct: 244 LMTSEERRKQLR 255
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 73.0 bits (178), Expect = 1e-13
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 676 GCEFLNNEGSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDED 735
E L++ GSA++ + NHSC PN + + + + A ++I GDE+ SY+D
Sbjct: 187 EDEELSHLGSAIFPDVALMNHSCCPNVIVTY--KGTLAEVRAVQEIHPGDEVFTSYID-- 242
Query: 736 LLERGREKRNNYLR 749
L E RN+ LR
Sbjct: 243 -LLYPTEDRNDRLR 255
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 68.4 bits (166), Expect = 4e-12
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 14/84 (16%)
Query: 677 CEFLNNEGSALYKLQSSSNHSCVPNAEIKF-----------PYSNFVLNMVATRDIASGD 725
L G ++ NH C PN + F ++ + + A I+ G+
Sbjct: 187 QRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGE 246
Query: 726 EICISYMDEDLLERGREKRNNYLR 749
E+ +SY+D E+R L+
Sbjct: 247 ELTVSYID---FLHLSEERRRQLK 267
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 5e-10
Identities = 84/490 (17%), Positives = 136/490 (27%), Gaps = 212/490 (43%)
Query: 72 TYSNLIPLSFVLGFYISIIMTRWWDQYN-NIPWP-DAMAV----------------YVSS 113
+ L+P + F S + +Q+N +P P + A YVSS
Sbjct: 17 EHVLLVPTA--SFFIASQL----QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 114 QVHGQDERGRMMRRTIMRYVCVCITMVLANISPRVKKRFPSLDHFVEVGLLLENE----- 168
V + G+ VL L F E L N+
Sbjct: 71 LVE-PSKVGQF-------------DQVLNLC----------LTEF-ENCYLEGNDIHALA 105
Query: 169 --------------KNIISA-----INDKFPGPPKHWMPIVWAASVVTRARKEGRV---- 205
K +I I K P K S + RA EG
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS-------NSALFRAVGEGNAQLVA 158
Query: 206 ---------------RDDFSV-KSIIDEL-NRIRGQCGKLLSYDTVSVPLVYTQVVTLAV 248
RD + ++ +L +L+ T+ V+TQ + +
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR-TTLDAEKVFTQGLNI-- 215
Query: 249 YSFLITTIMGRQWLDVPAESDTSHPLRIHNNYIDLY---FPIFTILQFFFYMGWLKVAEV 305
+WL+ P + +Y+ P+ ++Q Y+ K+
Sbjct: 216 ----------LEWLENP---SNTPD----KDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 306 LINPF------------------------GDDDEDFEVNWMIDRNIQVSYLIVDGMHHEH 341
P D E F V+ + + I V + I G
Sbjct: 259 --TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS--VRKAITVLFFI--G----- 307
Query: 342 PDLVRDQYWDDVFP-SELP--YTSAAEPFREKIPQP--STANIAVDACQ--VEYTN---P 391
VR + +P + LP + E +P P S +N+ + Q V TN P
Sbjct: 308 ---VRCY---EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 392 TSVKVEGS--NNPNYALLQEDSQSENDRNFII-GSVSS--------------------KL 428
+VE S N +N ++ G S ++
Sbjct: 362 AGKQVEISLVNGA--------------KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 429 PRREREKSIS 438
P ER+ S
Sbjct: 408 PFSERKLKFS 417
Score = 44.3 bits (104), Expect = 2e-04
Identities = 85/570 (14%), Positives = 151/570 (26%), Gaps = 233/570 (40%)
Query: 171 IIS--AINDKFPGPPKHWMPIVWAASVVTRARKEGRVRDDFSVKSIID------------ 216
+S ++ P + + AS ++++ F+ K + +
Sbjct: 10 TLSHGSLEHVLLVPTASF----FIAS---------QLQEQFN-KILPEPTEGFAADDEPT 55
Query: 217 ---ELNRIRGQCGKLLSY--DTV--SVPLVYTQVVTLAVYSFLITTIMGRQWLDV----- 264
EL GK L Y V S + QV+ L + F + D+
Sbjct: 56 TPAEL------VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGN--DIHALAA 106
Query: 265 --PAESDTSHPLRIHNNYIDLYFPIFTILQFFFYMGWLKVAEVLIN-PFGDDDED--FE- 318
E+DT L I Y A ++ PF F
Sbjct: 107 KLLQENDT--TLVKTKELIKNYI----------------TARIMAKRPFDKKSNSALFRA 148
Query: 319 VNWMIDRNIQVSYLIVDGMHHEHPDLVRDQ-----YWDDVFPSEL-----PYTSAAEPFR 368
V + N Q+ I G Q Y++ EL Y
Sbjct: 149 VG---EGNAQL-VAIFGG-----------QGNTDDYFE-----ELRDLYQTYHVLVGDL- 187
Query: 369 EKIPQPSTANIAVDACQVEYTNPTSVKVEGSNNPNYALLQEDSQSENDRNFIIG---SVS 425
I A L E ++ D + ++
Sbjct: 188 ----------IKFSA---------------------ETLSELIRTTLDAEKVFTQGLNIL 216
Query: 426 SKL--PRREREKSISCDSTSSMNTLGMGSIANSLN--KISGGSMQTLRKIFSGSNDNKLT 481
L P +K S +G+ +A+ + K+ G + LR G+
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA----TG 272
Query: 482 CANDGVAMKP--ASQSSDNLAKSAGTSMRITDQVIEELDEQMTITASG-RLEPRRAAQDI 538
+ V + S ++ S ++ + + G R +
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITV-------------LFFIGVR------CYEA 313
Query: 539 FSEGNIPSSLPID-------VPTNP-------------------NSDYPRNRPDSSARSS 572
+ ++P S+ D VP+ P NS P + + +
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPS-PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 573 GTYAEIFTGAPTTPNEENFDLGAFDNDLMSSDGSSTVHSSRRNSSTFKDSDAKAAFESLK 632
G + +G P L + L R+ AKA L
Sbjct: 373 GAKNLVVSGPPQ-------SLYGLNLTL------------RK---------AKAP-SGLD 403
Query: 633 RSRQ---QEKMSVKLVRS---ISAAPSHTS 656
+SR + K +K ++ +P H+
Sbjct: 404 QSRIPFSERK--LKFSNRFLPVA-SPFHSH 430
Score = 41.6 bits (97), Expect = 0.001
Identities = 27/204 (13%), Positives = 57/204 (27%), Gaps = 80/204 (39%)
Query: 53 YQLNPEQKKTFESIVEYCDTYSNLIPLSFVLGFYISIIMTRWWDQYNNIPWPDAMAVYVS 112
Y+ + + + D + GF I I+ NN P + ++
Sbjct: 1636 YKTSKAAQDVWNR----ADNH-----FKDTYGFSILDIVI------NN---PVNLTIHFG 1677
Query: 113 SQVHGQDERGRMMRRTIMRYVCVCITMVLANI---SPRVKKRFPSLDHFVEVGLLLENEK 169
+ +G+ +R Y M+ I + +K F ++ E+
Sbjct: 1678 GE------KGKRIR---ENY----SAMIFETIVDGKLKTEKIFKEIN---------EHST 1715
Query: 170 NIISAINDKFPGPPKHWM-------PIVWAASV-VTRA-RKEGRVRDD------------ 208
+ F K + P + + +G + D
Sbjct: 1716 SYT------FRS-EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 209 --------FSVKSIIDELNRIRGQ 224
S++S++ E+ RG
Sbjct: 1769 ALASLADVMSIESLV-EVVFYRGM 1791
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 2e-08
Identities = 72/566 (12%), Positives = 162/566 (28%), Gaps = 171/566 (30%)
Query: 46 ALNLTYR--YQLNPEQKKTFESIVEYCDTYSNLIPLSFVLGFYISIIMTRWWDQYNNIPW 103
A++ T R + L +Q++ + VE + Y +M+ +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-----------Y-KFLMSPIKTEQRQPSM 107
Query: 104 PDAMAVYVSSQVHGQDE--------RGRMM---RRTIMR-----YVCVCITM------VL 141
M + +++ ++ R + R+ ++ V + + +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-GVLGSGKTWV 166
Query: 142 ANI---SPRVKKRFPSLDHFVEVG------LLLENEKNIISAINDKFPGPPKHW----MP 188
A S +V+ + ++ + +LE + ++ I+ + H +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 189 IVWAASVVTR--ARKEGR----VRDDFSVKSIIDELNRIRGQCGKLL--SYD---TVSVP 237
I + + R K V + + N C K+L + T +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---LSC-KILLTTRFKQVTDFLS 282
Query: 238 LVYTQVVTLAVYSFLITTIMGR----QWL-----DVPAESDTSHPL---------RIHNN 279
T ++L +S +T + ++L D+P E T++P R
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 280 YIDLYFPIFTILQFFFYMGWLKVAEVLINPFGDDDEDFEVNWMIDRNIQVSYLIVDGMHH 339
D W V + I+ S +++
Sbjct: 343 TWD---------------NWKHVN----------------CDKLTTIIESSLNVLE---- 367
Query: 340 EHPDLVRDQYWD-DVFPSELPYTSAAEPFREKIPQPSTANIAVDACQVEYTNPTSVKVEG 398
P R + VFP IP T +++ V ++ V +
Sbjct: 368 --PAEYRKMFDRLSVFPPSA-----------HIP---TILLSLIWFDVIKSDVMVVVNKL 411
Query: 399 SNNPNYALLQEDS----------------QSENDRNF---IIGSVSSKLPRREREKSISC 439
Y+L+++ + EN+ I+ + +
Sbjct: 412 H---KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 440 DSTSSMNTLG--MGSIANSLNKISGGSMQTLRKIFSGSN--DNKLTCANDGVAMKPASQS 495
+ +G + +I + M R +F + K+ +D A +
Sbjct: 469 LDQYFYSHIGHHLKNIEH------PERMTLFRMVFLDFRFLEQKIR--HDSTAWNASGSI 520
Query: 496 SDNLAKSAGTSMRITDQVIEELDEQM 521
+ L + I D + E++
Sbjct: 521 LNTLQQLKFYKPYICDN--DPKYERL 544
Score = 50.2 bits (119), Expect = 2e-06
Identities = 69/499 (13%), Positives = 125/499 (25%), Gaps = 144/499 (28%)
Query: 316 DFEVNWMIDRNIQVSYLIVDGMHHEHPDLVRDQYWDDVFPSELPYTSAAEPFREKIPQPS 375
DFE Q Y D + V + DV S E I
Sbjct: 8 DFETGEH-----QYQY--KDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-IDHIIMSKD 59
Query: 376 TANIA---VDACQVEYTNPTSVKVEGSNNPNYALLQEDSQSEN--------------DRN 418
+ + VE NY L ++E DR
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 419 FIIGSVSSKL--PRRE-----REKSISCDSTSSMNTLGMGSIANSLNKISGGS---MQTL 468
+ V +K R + R+ + ++ G+ SG + +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG--------SGKTWVALDVC 171
Query: 469 RKIFSGSNDNKLTCANDG----VAMKPASQSSDNLAKSAGTSMRITDQVIEELDEQMTI- 523
K+ C D + +K + L +I D I
Sbjct: 172 L-------SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 524 --TASGRLEPRRAAQDIFSEGNIPSSLPI--DVPTNPNSDYPRNRPDSSARSSGTYAEIF 579
S + E RR + + L + +V + F
Sbjct: 225 LRIHSIQAELRR----LLKSKPYENCLLVLLNV------------------QNAKAWNAF 262
Query: 580 TGA----PTTPNEENFDLGAFDNDLMSSDGSSTVH-SSRRNSSTFKDSDAKAAFES-LKR 633
+ TT ++ D ++T H S +S T + K+ L
Sbjct: 263 NLSCKILLTTRFKQVTD---------FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 634 SRQQEKMSVK----LVRSISAA-----PSH--------TSEQDKPVEEPVEVVPPGEDSG 676
Q V SI A + + +E + V+ P E
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-- 371
Query: 677 CEFLNNEGSALYKLQSSSNHSCV---PNAEIKFPYSNFVLNMVATRDIASGDEICISYMD 733
++ P+A I P +L+++ I + ++
Sbjct: 372 --------RKMFD-------RLSVFPPSAHI--PTI--LLSLIWFDVI---KSDVMVVVN 409
Query: 734 ED----LLERGREKRNNYL 748
+ L+E+ ++ +
Sbjct: 410 KLHKYSLVEKQPKESTISI 428
Score = 47.2 bits (111), Expect = 2e-05
Identities = 62/379 (16%), Positives = 114/379 (30%), Gaps = 137/379 (36%)
Query: 5 YTAEVASCTGFGCFLKLLARWRGSIYKLVWPDLMAYLTLYYALNLTYRYQLNPEQKKT-F 63
A+ + C K+L R +K V L A T + +L+ + L P++ K+
Sbjct: 254 QNAKAWNAFNLSC--KILLTTR---FKQVTDFLSAATTTHISLDH-HSMTLTPDEVKSLL 307
Query: 64 ESIVEYCDTYSNLIPLSFVLG--FYISII-------MTRW--WDQYNNIPWPDAMAVYVS 112
++ C +P + +SII + W W N D +
Sbjct: 308 LKYLD-CRPQD--LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC----DKL----- 355
Query: 113 SQVHGQDERGRMMRRTIMRYVCVCITMVLANISPRVKKRFPSLDHFVEVGLLLENEKNII 172
TI I L + P ++ F + + + +I
Sbjct: 356 --------------TTI-------IESSLNVLEPAEYRK-----MFDRLSVFPPSA-HI- 387
Query: 173 SAINDKFPGPPKHWMPIVWAA----------------SVVTRARKEGRVR---------- 206
P + ++W S+V + KE +
Sbjct: 388 ----------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 207 ---DDFSV-KSIIDELNRIRGQCGKLLSYDTVSVP---------LVY-------TQVVTL 246
+++++ +SI+D N + D + P + + + +TL
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFD-----SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 247 --AVY---SFLITTI--MGRQWLDVPAESDTSHPLRIHNNYIDLYFPIF-----TILQFF 294
V+ FL I W + +T L+ + YI P + IL F
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 295 FYMGWLKVAEVLIN-PFGD 312
K+ E LI + D
Sbjct: 553 P-----KIEENLICSKYTD 566
Score = 45.2 bits (106), Expect = 7e-05
Identities = 52/409 (12%), Positives = 120/409 (29%), Gaps = 115/409 (28%)
Query: 207 DDFSVKSIIDELNRI--RGQCGKLLSYDTVSVPLVYTQVVTL------AVYSFLITTI-M 257
D+F K + D I + + ++ V TL V F+ + +
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDA-VSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 258 GRQWLDVPAESDTSHPLRIHNNYIDLYFPIFTILQFF----------------------- 294
++L P +++ P + YI+ ++ Q F
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 295 -----FY-MG-----WLKVAEVLINPFGDDDEDFEVNWMIDRNIQVSYLIVDGM----HH 339
+ W+ +V ++ DF++ W+ +N +++ + +
Sbjct: 150 AKNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 340 EHPDLVRDQYWDDVFPSELPYTSAAEPFREKIPQPSTAN---I--------AVDA----C 384
P+ D +L S R + N + A +A C
Sbjct: 209 IDPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 385 QVEYTNPTSVKVEGSNNPNYALLQEDSQSENDRNFIIGSVSSKLPRREREKSISCDSTSS 444
++ T ++ + +F+ + ++ + +++ D S
Sbjct: 267 KILLT---------------------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 445 MNTLGMGSIANSLNKISGGSMQTL-RKIFSGSNDNKLTCANDGVAMKPASQSSDNLAKSA 503
+ L K Q L R++ + N + +++ + DN
Sbjct: 306 L-----------LLKYLDCRPQDLPREVLTT---NPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 504 GTSM-RITDQVIEELDEQMTITASGRLEPRRAAQD--IFSEG-NIPSSL 548
+ I + + L+ E R+ +F +IP+ L
Sbjct: 352 CDKLTTIIESSLNVLEPA---------EYRKMFDRLSVFPPSAHIPTIL 391
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer;
NMR {Paramecium bursaria chlorella virus 1} SCOP:
b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Length = 119
Score = 48.4 bits (116), Expect = 3e-07
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 695 NHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISY 731
NHS PNA + + + + IA G+EI ISY
Sbjct: 69 NHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISY 105
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET
domain, protein lysine methyltransferase, enzyme-
peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo
sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A*
3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A*
4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Length = 261
Score = 44.3 bits (104), Expect = 7e-05
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 676 GCEFLNNEGSALYKLQSSSNHSCVPNAEIKF---PYSNFVLNMVATRDIASGDEICISY 731
E N+ L +NHS PN P + + R + + +E+ ++Y
Sbjct: 172 VPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAY 230
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent
methyltransferase histone H3 lysine- 9 methylation;
1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Length = 302
Score = 40.3 bits (94), Expect = 0.001
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 695 NHSCVPNAEI-KFPYSNFVLNM-----VATRDIASGDEICISYMDE 734
NHSC PN I + ++ A +DI G E+ Y++
Sbjct: 225 NHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNG 270
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET,
lysine, alternative splicing, cell cycle, cell division,
chromatin regulator, chromosomal protein, coiled coil;
HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A*
3f9z_A* 1zkk_A* 2bqz_A*
Length = 166
Score = 38.8 bits (91), Expect = 0.002
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 695 NHSCVPNAEIKFPYSNFVLNMV--ATRDIASGDEICISYMDED 735
NHS N + K + V +++ A+RDIA+G+E+ Y D
Sbjct: 112 NHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGDRS 154
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor,
variegation 4-20 homolog 2, structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.80A
{Homo sapiens}
Length = 247
Score = 39.2 bits (91), Expect = 0.003
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 695 NHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDE 734
NH C PN + N + RDI GDE+ Y +
Sbjct: 181 NHDCKPNCKFVPADGNAAC-VKVLRDIEPGDEVTCFYGEG 219
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati
regulator, DNA damage, DNA repair, DNA-binding, nucleus,
ST genomics; HET: SAH; 1.59A {Homo sapiens}
Length = 290
Score = 39.5 bits (92), Expect = 0.003
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 11/47 (23%)
Query: 695 NHSCVPNAEI-------KFPYSNFVLNMVATRDIASGDEICISYMDE 734
NHSC PN + P L + A +DI +E+ Y
Sbjct: 210 NHSCEPNLLMIPVRIDSMVPK----LALFAAKDIVPEEELSYDYSGR 252
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4,
SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP:
b.85.7.1 PDB: 1mvx_A
Length = 299
Score = 39.4 bits (92), Expect = 0.003
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 695 NHSCVPNAE-IKFPYSNFVLNM-----VATRDIASGDEICISYMDEDLLERGREKRNNYL 748
NHSC PN ++ + A +DI +E+ Y + +++
Sbjct: 218 NHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQKSQQN 277
Query: 749 R 749
R
Sbjct: 278 R 278
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 39.1 bits (91), Expect = 0.004
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 14/60 (23%)
Query: 695 NHSCVPNAEI----------KFPYSNFVLNMVATRDIASGDEICISYMDEDLLERGREKR 744
NH C PN +FP + +TR I +G+++ Y + +G+
Sbjct: 221 NHHCEPNLVPVRVFMAHQDLRFPR----IAFFSTRLIEAGEQLGFDYGERFWDIKGKLFS 276
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation,
chromosomal rearrangement, protein lysine
methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo
sapiens} PDB: 2w5z_A*
Length = 192
Score = 37.7 bits (88), Expect = 0.006
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 695 NHSCVPNAEIKFPYSNFVLNMV--ATRDIASGDEICISY 731
NHSC PN + + ++V A R I G+E+ Y
Sbjct: 129 NHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDY 167
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9
methyltransferase 2, H3 lysine-9 specific 2, alternative
splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Length = 300
Score = 36.4 bits (84), Expect = 0.026
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 695 NHSCVPNAE-IKFPYSNFVLNMV-----ATRDIASGDEICISY 731
NHSC PN + N + +TR I +G+E+ Y
Sbjct: 220 NHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDY 262
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine
methyltransferase, transferase, network VIA methyllysine
signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Length = 449
Score = 36.4 bits (83), Expect = 0.031
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 674 DSGCEFLNNEGSALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMD 733
+ + + NH NA +++ + MVAT+ I G EI +Y
Sbjct: 206 EEEEDEKEPNSPVMVPAADILNHLANHNANLEYSANCLR--MVATQPIPKGHEIFNTYGQ 263
Query: 734 ---EDLLER 739
L+
Sbjct: 264 MANWQLIHM 272
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone
methyltransferase, transcription regulat histone lysine,
SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo
sapiens}
Length = 273
Score = 35.4 bits (81), Expect = 0.050
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 692 SSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISY 731
+ NH C PN + + + A RDI G+EI Y
Sbjct: 207 AFINHDCRPNCKFVSTGRDTAC-VKALRDIEPGEEISCYY 245
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus;
HET: SAM; 2.90A {Homo sapiens}
Length = 222
Score = 35.0 bits (81), Expect = 0.052
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 695 NHSCVPNAEIKFPYSNFVLNMV--ATRDIASGDEICISY 731
NHSC PN E++ N V + A +D+ +G E+ Y
Sbjct: 151 NHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDY 189
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20
specific; SET domain, S-adenosyl-L methionine; HET: SAM;
1.75A {Homo sapiens}
Length = 232
Score = 34.3 bits (79), Expect = 0.11
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 695 NHSCVPNAEIKFPYSNFVLNMV--ATRDIASGDEICISY 731
NH C PN E + N + A DI +G E+ +Y
Sbjct: 170 NHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNY 208
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 34.0 bits (78), Expect = 0.14
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 695 NHSCVPNAE-IKFPYSNFV-LNMVATRDIASGDEICISY 731
NHSC PN E K+ + + + T+ + SG E+ Y
Sbjct: 195 NHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDY 233
>3smt_A Histone-lysine N-methyltransferase SETD3; histone
methyltransferase, histone modification, LYSI
translational modification, structural genomics; HET:
SAM; 2.04A {Homo sapiens}
Length = 497
Score = 34.4 bits (78), Expect = 0.14
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 695 NHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMD 733
NH+ + + VA +D +G++I I Y
Sbjct: 277 NHTNGLITTG-YNLEDDRCECVALQDFRAGEQIYIFYGT 314
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain,
protein lysine methyltransferase, transferase; HET: SAM;
2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB:
2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Length = 440
Score = 32.5 bits (73), Expect = 0.61
Identities = 4/40 (10%), Positives = 17/40 (42%)
Query: 695 NHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICISYMDE 734
+H+ +++ ++ + + +G+++ I Y
Sbjct: 203 DHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLN 242
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.2 bits (70), Expect = 0.75
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 691 QSSSNHSCVPNAEIKF--PY-SNFVLNMVATRDIASGDEICIS---YMDEDLLERGREKR 744
PN I P + +V + GD +C + + L++ E R
Sbjct: 7 IDKRAGRRGPNLNIVLTCPECKVYPPKIV--ERFSEGDVVCALCGLVLSDKLVDTRSEWR 64
Query: 745 N 745
Sbjct: 65 T 65
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A
{Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
PDB: 2fu3_A 1t3e_A
Length = 419
Score = 29.5 bits (67), Expect = 4.0
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 28/72 (38%)
Query: 532 RRAAQDIFSEGNIPSSLPIDVPTNPNS----------DYPRN----------RPDSSARS 571
R AQD+++ ++P P S D P + +
Sbjct: 36 RVLAQDVYA--------KDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQPTQTVM 87
Query: 572 SGTYAEIFTGAP 583
G + TGAP
Sbjct: 88 PGQVMRVTTGAP 99
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 6.7
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 9/31 (29%)
Query: 683 EGSALYKLQSS----SNHSCVP----NAEIK 705
E AL KLQ+S ++ S P A ++
Sbjct: 18 EKQALKKLQASLKLYADDS-APALAIKATME 47
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1,
structural genomics, structural genomics consortium,
SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Length = 196
Score = 28.2 bits (62), Expect = 7.5
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 671 PGEDSGCEFLNNEG-SALYKLQSSSNHSCVPNAEIKFPYSNFVLNMVATRDIASGDEICI 729
GE NE S + + ++ N + + + I + E+ +
Sbjct: 114 RGELHHFIDGFNEEKSNWMRYVNPAHSPREQNLAAC--QNGMNIYFYTIKPIPANQELLV 171
Query: 730 SYMDE 734
Y +
Sbjct: 172 WYCRD 176
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor
biosynthesis, metal binding protein; 1.95A {Escherichia
coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A
1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A
2nrp_A 2nqv_A 2nrs_A 2nqn_A
Length = 411
Score = 28.7 bits (65), Expect = 8.8
Identities = 19/74 (25%), Positives = 23/74 (31%), Gaps = 30/74 (40%)
Query: 532 RRAAQDIFSEGNIPSSLPIDVPTNPNS----------DYPRN------------RPDSSA 569
R A D+ S P+DVP NS D +P
Sbjct: 38 RILASDVVS--------PLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGE 89
Query: 570 RSSGTYAEIFTGAP 583
+GT I TGAP
Sbjct: 90 WPAGTCIRIMTGAP 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.393
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,415,185
Number of extensions: 688288
Number of successful extensions: 1299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1272
Number of HSP's successfully gapped: 35
Length of query: 749
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 648
Effective length of database: 3,881,772
Effective search space: 2515388256
Effective search space used: 2515388256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.9 bits)