BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2636
(335 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|357602873|gb|EHJ63549.1| hypothetical protein KGM_00033 [Danaus plexippus]
Length = 572
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/306 (66%), Positives = 232/306 (75%), Gaps = 44/306 (14%)
Query: 30 DTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDK 89
+ SR PPSPSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLA+K+CPVDK
Sbjct: 224 NASRAAPPSPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAEKSCPVDK 283
Query: 90 RRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYR 149
RRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK PQESPPSPP+SLITAL
Sbjct: 284 RRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKCPQESPPSPPISLITAL-- 341
Query: 150 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY 209
+R D P F++L Y
Sbjct: 342 ----------------------------VRAHVDTSPDFANLDYSQ-------------Y 360
Query: 210 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 269
REPNP+EPPI++ E IQQFY+LL+TS+D+I+ FA+K+PG+ DLC ED+E LF SA LELF
Sbjct: 361 REPNPMEPPISDIEVIQQFYTLLSTSIDMIKVFAEKVPGYGDLCPEDREQLFASARLELF 420
Query: 270 VLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACL 329
VLRLAYRTR +DTKL FCNG+VL+K+QCQRSFG DWL+A+L+F +LH M+IDIS FACL
Sbjct: 421 VLRLAYRTRPDDTKLTFCNGLVLDKRQCQRSFG-DWLHAVLDFSNTLHSMDIDISTFACL 479
Query: 330 CALTLI 335
CALTLI
Sbjct: 480 CALTLI 485
>gi|242016902|ref|XP_002428935.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212513751|gb|EEB16197.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 595
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 222/303 (73%), Positives = 237/303 (78%), Gaps = 44/303 (14%)
Query: 33 RPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRR 92
RP P SPSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK+CPVDKRRR
Sbjct: 220 RPAPQSPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKSCPVDKRRR 279
Query: 93 NRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPN 152
NRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL
Sbjct: 280 NRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL----- 334
Query: 153 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREP 212
+R D P ++L YREP
Sbjct: 335 -------------------------VRAHVDTTPDLANLDFSQ-------------YREP 356
Query: 213 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
P EPP++E EKIQQFYSLLTTSVDVIRHFADKIPGF++L KEDQ+LLFQSASLELFVLR
Sbjct: 357 IPGEPPMSEAEKIQQFYSLLTTSVDVIRHFADKIPGFTELTKEDQDLLFQSASLELFVLR 416
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
LAYRT+A+DTKL FCNGVVL+K QCQRSFG DWL+AIL+FCQSLH M+IDISAFACLCAL
Sbjct: 417 LAYRTKADDTKLTFCNGVVLDKHQCQRSFG-DWLHAILDFCQSLHAMDIDISAFACLCAL 475
Query: 333 TLI 335
TLI
Sbjct: 476 TLI 478
>gi|383857638|ref|XP_003704311.1| PREDICTED: uncharacterized protein LOC100884030 [Megachile
rotundata]
Length = 793
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 226/334 (67%), Positives = 250/334 (74%), Gaps = 48/334 (14%)
Query: 6 SSSSESPKLRHSAPLSSA---SSSPGCDTSRP-TPPSPSQLCAVCGDIAACQHYGVRTCE 61
S S+ESPK R + + + S SPG S PPSPSQLCAVCGD AACQHYGVRTCE
Sbjct: 418 SGSTESPKARGGSGSTGSSVNSPSPGSGASNERAPPSPSQLCAVCGDTAACQHYGVRTCE 477
Query: 62 GCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGR 121
GCKGFFKRTVQKGSKYVCLA+KACPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGR
Sbjct: 478 GCKGFFKRTVQKGSKYVCLAEKACPVDKRRRNRCQFCRFQKCLMVGMVKEVVRTDSLKGR 537
Query: 122 RGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHF 181
RGRLPSKPKSPQESPPSPPVSLITAL +R
Sbjct: 538 RGRLPSKPKSPQESPPSPPVSLITAL------------------------------VRAH 567
Query: 182 ADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH 241
D P DQ L S YR+P P +PPI E EK QQFY+LLTTS+DVIR+
Sbjct: 568 LDTTP--------DQASLDYSQ-----YRQPRPGDPPITEAEKTQQFYNLLTTSIDVIRN 614
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSF 301
FADKIPGF+DL +EDQELLFQSASLELFVLRLAYRT+ EDTKL FCNGVVL +QCQRSF
Sbjct: 615 FADKIPGFTDLVREDQELLFQSASLELFVLRLAYRTKPEDTKLTFCNGVVLALEQCQRSF 674
Query: 302 GDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G DWL++ILEFC++LH++++DISAFACLCALTL+
Sbjct: 675 G-DWLHSILEFCRALHVLDVDISAFACLCALTLV 707
>gi|189237801|ref|XP_001814072.1| PREDICTED: similar to AGAP008334-PA [Tribolium castaneum]
Length = 633
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/302 (72%), Positives = 233/302 (77%), Gaps = 44/302 (14%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
PTPPSPSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN
Sbjct: 290 PTPPSPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 349
Query: 94 RCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNP 153
RCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL
Sbjct: 350 RCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL------ 403
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
+R D P ++L Y EP+
Sbjct: 404 ------------------------VRAHVDTTPDLANLDYSQ-------------YLEPS 426
Query: 214 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
P+EP I+E EKIQQFY+LLTTSVDVI++FADKIPGF +LC ED+ELLFQSASLELFVLRL
Sbjct: 427 PIEPVISEAEKIQQFYTLLTTSVDVIKNFADKIPGFQELCPEDRELLFQSASLELFVLRL 486
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALT 333
AYRT DTKL FCNGVVL+KQQCQRSFG DWL+AI+EFC SL MEIDISAFACLCALT
Sbjct: 487 AYRTHPNDTKLTFCNGVVLDKQQCQRSFG-DWLHAIMEFCSSLMAMEIDISAFACLCALT 545
Query: 334 LI 335
LI
Sbjct: 546 LI 547
>gi|270008126|gb|EFA04574.1| hormone receptor in 38-like protein [Tribolium castaneum]
Length = 744
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 219/302 (72%), Positives = 233/302 (77%), Gaps = 44/302 (14%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
PTPPSPSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN
Sbjct: 306 PTPPSPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 365
Query: 94 RCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNP 153
RCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL
Sbjct: 366 RCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL------ 419
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
+R D P ++L Y EP+
Sbjct: 420 ------------------------VRAHVDTTPDLANLDYSQ-------------YLEPS 442
Query: 214 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
P+EP I+E EKIQQFY+LLTTSVDVI++FADKIPGF +LC ED+ELLFQSASLELFVLRL
Sbjct: 443 PIEPVISEAEKIQQFYTLLTTSVDVIKNFADKIPGFQELCPEDRELLFQSASLELFVLRL 502
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALT 333
AYRT DTKL FCNGVVL+KQQCQRSFG DWL+AI+EFC SL MEIDISAFACLCALT
Sbjct: 503 AYRTHPNDTKLTFCNGVVLDKQQCQRSFG-DWLHAIMEFCSSLMAMEIDISAFACLCALT 561
Query: 334 LI 335
LI
Sbjct: 562 LI 563
>gi|332019521|gb|EGI60000.1| Putative nuclear hormone receptor HR38 [Acromyrmex echinatior]
Length = 803
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 221/335 (65%), Positives = 248/335 (74%), Gaps = 50/335 (14%)
Query: 6 SSSSESPKLRHSAPLSSAS----SSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCE 61
S S++SPK R +S++ S + PPSPSQLCAVCGD AACQHYGVRTCE
Sbjct: 428 SGSTDSPKPRGGGGTASSTVSSPSPGSGTSGERAPPSPSQLCAVCGDTAACQHYGVRTCE 487
Query: 62 GCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGR 121
GCKGFFKRTVQKGSKYVCLA+KACPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGR
Sbjct: 488 GCKGFFKRTVQKGSKYVCLAEKACPVDKRRRNRCQFCRFQKCLMVGMVKEVVRTDSLKGR 547
Query: 122 RGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHF 181
RGRLPSKPKSPQESPPSPPVSLITAL +R
Sbjct: 548 RGRLPSKPKSPQESPPSPPVSLITAL------------------------------VRAH 577
Query: 182 ADKIPGFSDLCKEDQELLFQSASLELF-YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIR 240
D P ASL+ YR+P P +PPI E EKIQQFY+LLTTS+DVIR
Sbjct: 578 LDTTP--------------DKASLDYSQYRQPRPGDPPITEAEKIQQFYNLLTTSIDVIR 623
Query: 241 HFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS 300
+FADKIPGF+DL +EDQELLFQSASLELFVLRLAYRT +DTKL+FCNGVVL +QCQRS
Sbjct: 624 NFADKIPGFTDLVREDQELLFQSASLELFVLRLAYRTHPDDTKLVFCNGVVLALEQCQRS 683
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
FG DWL++IL+FC++LH +E+DISAFACLCALTL+
Sbjct: 684 FG-DWLHSILDFCKALHFLEVDISAFACLCALTLV 717
>gi|193712543|ref|XP_001944711.1| PREDICTED: hypothetical protein LOC100162780 [Acyrthosiphon pisum]
Length = 728
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 222/346 (64%), Positives = 241/346 (69%), Gaps = 60/346 (17%)
Query: 6 SSSSESPKLRH-------SAPLSSASSSPGCDTSRP---------TPPSPSQLCAVCGDI 49
+S+S SPKLRH + P+ + +P P P SPSQLCAVCGD
Sbjct: 340 ASNSLSPKLRHCINTLSVTVPVECSPPTPDAACIMPQRNATAVATAPSSPSQLCAVCGDT 399
Query: 50 AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMV 109
AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK CPVDKRRRNRCQFCRFQKCLQVGMV
Sbjct: 400 AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQFCRFQKCLQVGMV 459
Query: 110 KEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYS 169
KEVVRTDSLKGRRGRLPSKPKSP SPPSPPVSLITA
Sbjct: 460 KEVVRTDSLKGRRGRLPSKPKSPHGSPPSPPVSLITA----------------------- 496
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFY 229
++R D P FS L Y EP P EP I E EKIQQF+
Sbjct: 497 -------IVRAHVDTNPDFSSLDYSQ-------------YHEPKPFEPLITEAEKIQQFF 536
Query: 230 SLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNG 289
LLTTSV+VIRHFA+KIPGF LCK DQ+LLFQSASLELFVLRLAYRT+ DTKLIFCNG
Sbjct: 537 GLLTTSVEVIRHFAEKIPGFKTLCKSDQDLLFQSASLELFVLRLAYRTKYADTKLIFCNG 596
Query: 290 VVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
VVL+KQQC RSFG DWL AIL+F QSLH ++IDIS+F+CLCALTLI
Sbjct: 597 VVLDKQQCHRSFG-DWLQAILDFSQSLHSLDIDISSFSCLCALTLI 641
>gi|157135212|ref|XP_001663431.1| expressed protein (AHR38) [Aedes aegypti]
gi|108870261|gb|EAT34486.1| AAEL013270-PA [Aedes aegypti]
Length = 790
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 214/302 (70%), Positives = 228/302 (75%), Gaps = 44/302 (14%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
PTP SPSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN
Sbjct: 447 PTPQSPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 506
Query: 94 RCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNP 153
RCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVS+ITAL
Sbjct: 507 RCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSMITAL------ 560
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
+R D P + L YREP
Sbjct: 561 ------------------------VRAHVDTTPDLASLDYSQ-------------YREPG 583
Query: 214 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
EP I+E EK+QQFY+LLTTSVDVI+ FADK+PGFSDL +DQELLFQSASLELFVLRL
Sbjct: 584 QNEPIISEAEKVQQFYNLLTTSVDVIKQFADKLPGFSDLSSDDQELLFQSASLELFVLRL 643
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALT 333
+YR R +DTK+ FCNGVVL K QCQRSFG DWLNAILEF +SLH MEIDISAFACLCALT
Sbjct: 644 SYRARIDDTKMTFCNGVVLHKHQCQRSFG-DWLNAILEFSKSLHSMEIDISAFACLCALT 702
Query: 334 LI 335
L+
Sbjct: 703 LV 704
>gi|158296777|ref|XP_317123.4| AGAP008334-PA [Anopheles gambiae str. PEST]
gi|157014874|gb|EAA12420.4| AGAP008334-PA [Anopheles gambiae str. PEST]
Length = 732
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 212/302 (70%), Positives = 229/302 (75%), Gaps = 44/302 (14%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
PTP SPSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN
Sbjct: 389 PTPVSPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 448
Query: 94 RCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNP 153
RCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVS+ITAL
Sbjct: 449 RCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSMITAL------ 502
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
+R D P + L YREP
Sbjct: 503 ------------------------VRAHVDTTPDLASLDYSQ-------------YREPG 525
Query: 214 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
EP I E EK+QQFY+LLTTSVDVI+HFADK+PG++DL EDQELLFQSASLELFVLRL
Sbjct: 526 QNEPIITEAEKVQQFYNLLTTSVDVIKHFADKLPGYNDLSVEDQELLFQSASLELFVLRL 585
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALT 333
+YR R++DTK+ FCNGVVL + QCQRSFG DWLNAILEF +SLH M+IDISAFACLCALT
Sbjct: 586 SYRARSDDTKMTFCNGVVLHRHQCQRSFG-DWLNAILEFSKSLHAMQIDISAFACLCALT 644
Query: 334 LI 335
L+
Sbjct: 645 LV 646
>gi|1708293|sp|P49870.1|HR38_BOMMO RecName: Full=Probable nuclear hormone receptor HR38; Short=bHR38;
AltName: Full=Nuclear receptor subfamily 4 group A
member 4
gi|929003|emb|CAA61535.1| BHR38 [Bombyx mori]
Length = 360
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/318 (64%), Positives = 230/318 (72%), Gaps = 49/318 (15%)
Query: 23 ASSSPGCDTS-----RPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKY 77
SSSPG + R P SPSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKY
Sbjct: 1 GSSSPGVAPADNTGPRAAPSSPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKY 60
Query: 78 VCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPP 137
VCLA+K+CPVDKRRRNRCQFC FQKCL VGMVKEVVRTDSLKGRRGRLPSKPK PQESPP
Sbjct: 61 VCLAEKSCPVDKRRRNRCQFCWFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKCPQESPP 120
Query: 138 SPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 197
SPP+SLITAL +R D P F++L
Sbjct: 121 SPPISLITAL------------------------------VRAHVDTSPDFANLDYSQ-- 148
Query: 198 LLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 257
YREP+PLEPP+++ E IQQFYSLLTTS+D+I+ FA+K+PG+ DLC ED+
Sbjct: 149 -----------YREPSPLEPPMSDLEVIQQFYSLLTTSIDMIKLFAEKVPGYGDLCPEDR 197
Query: 258 ELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLH 317
E LF SA LELFVLRLAYRT EDTKL F NG VL+K+QCQRSFG DWL+A+L+F + +
Sbjct: 198 EQLFASARLELFVLRLAYRTALEDTKLTFSNGSVLDKRQCQRSFG-DWLHAVLDFSNTSY 256
Query: 318 LMEIDISAFACLCALTLI 335
M+IDIS FACLCALTLI
Sbjct: 257 SMDIDISTFACLCALTLI 274
>gi|170036586|ref|XP_001846144.1| nuclear hormone receptor [Culex quinquefasciatus]
gi|167879298|gb|EDS42681.1| nuclear hormone receptor [Culex quinquefasciatus]
Length = 707
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 220/314 (70%), Positives = 233/314 (74%), Gaps = 48/314 (15%)
Query: 26 SPGCDTSRP----TPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLA 81
S GC T P TP SPSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLA
Sbjct: 434 SGGCITPAPPRGTTPQSPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLA 493
Query: 82 DKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPV 141
DKACPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPV
Sbjct: 494 DKACPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPV 553
Query: 142 SLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ 201
S+ITAL +R D P DL D
Sbjct: 554 SMITAL------------------------------VRAHVDTTP---DLASLDYAQ--- 577
Query: 202 SASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLF 261
YREP EP I+E EK+QQFY+LLTTSVDVI+ FADK+PGFSDL +DQELLF
Sbjct: 578 -------YREPGQNEPIISEAEKVQQFYNLLTTSVDVIKQFADKLPGFSDLSPDDQELLF 630
Query: 262 QSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEI 321
QSASLELFVLRL+YR R +DTK+ FCNGVVL K QCQRSFG DWLNAILEF +SLH MEI
Sbjct: 631 QSASLELFVLRLSYRARIDDTKMTFCNGVVLHKLQCQRSFG-DWLNAILEFSKSLHSMEI 689
Query: 322 DISAFACLCALTLI 335
DISAFACLCALTL+
Sbjct: 690 DISAFACLCALTLV 703
>gi|307188426|gb|EFN73183.1| Probable nuclear hormone receptor HR38 [Camponotus floridanus]
Length = 655
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 221/335 (65%), Positives = 247/335 (73%), Gaps = 50/335 (14%)
Query: 6 SSSSESPKLRHSAPLSSAS----SSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCE 61
S S+ESPK R S + ++ S + PPSPSQLCAVCGD AACQHYGVRTCE
Sbjct: 280 SGSTESPKPRGSGGTAGSTVSSPSPGSGTSGERAPPSPSQLCAVCGDTAACQHYGVRTCE 339
Query: 62 GCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGR 121
GCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGR
Sbjct: 340 GCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLMVGMVKEVVRTDSLKGR 399
Query: 122 RGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHF 181
RGRLPSKPKSPQESPPSPPVSLITAL +R
Sbjct: 400 RGRLPSKPKSPQESPPSPPVSLITAL------------------------------VRAH 429
Query: 182 ADKIPGFSDLCKEDQELLFQSASLELF-YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIR 240
D P ASL+ Y+ P P +PP+ E EKIQQFY+LLTTS+DVIR
Sbjct: 430 LDTTP--------------DKASLDYSQYQPPRPGDPPMTEAEKIQQFYNLLTTSIDVIR 475
Query: 241 HFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS 300
+FADKIPGF+DL KEDQ+LLFQSASLELFVLRLAYRT +DTKL+FCNGVVL +QCQRS
Sbjct: 476 NFADKIPGFTDLVKEDQDLLFQSASLELFVLRLAYRTHPDDTKLVFCNGVVLALEQCQRS 535
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
FG +WL++IL+FC++LH +EIDISAFACLCALTL+
Sbjct: 536 FG-EWLHSILDFCKALHFLEIDISAFACLCALTLV 569
>gi|307202413|gb|EFN81833.1| Probable nuclear hormone receptor HR38 [Harpegnathos saltator]
Length = 428
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 213/301 (70%), Positives = 234/301 (77%), Gaps = 46/301 (15%)
Query: 36 PPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRC 95
PPSPSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLA+KACPVDKRRRNRC
Sbjct: 87 PPSPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAEKACPVDKRRRNRC 146
Query: 96 QFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLE 155
QFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL
Sbjct: 147 QFCRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL-------- 198
Query: 156 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF-YREPNP 214
+R D P ASL+ YR+P P
Sbjct: 199 ----------------------VRAHLDTTP--------------DKASLDYSQYRQPRP 222
Query: 215 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
+PPI E EKIQQFY+LLTTS+DVIR+FADKIPGF+DL +EDQELLFQSASLELFVLRLA
Sbjct: 223 GDPPITEAEKIQQFYNLLTTSIDVIRNFADKIPGFTDLVREDQELLFQSASLELFVLRLA 282
Query: 275 YRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
YRT +DTKL+FCNGVVL +QCQRSFG DWL++IL+FC++LH +E+DISAFACLCALTL
Sbjct: 283 YRTNPDDTKLVFCNGVVLALEQCQRSFG-DWLHSILDFCKALHFLEVDISAFACLCALTL 341
Query: 335 I 335
+
Sbjct: 342 V 342
>gi|6671099|gb|AAF23095.1|AF165528_1 nuclear hormone receptor [Aedes aegypti]
Length = 545
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 214/302 (70%), Positives = 228/302 (75%), Gaps = 44/302 (14%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
PTP SPSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN
Sbjct: 202 PTPQSPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 261
Query: 94 RCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNP 153
RCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVS+ITAL
Sbjct: 262 RCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSMITAL------ 315
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
+R D P + L YREP
Sbjct: 316 ------------------------VRAHVDTTPDLASLDYSQ-------------YREPG 338
Query: 214 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
EP I+E EK+QQFY+LLTTSVDVI+ FADK+PGFSDL +DQELLFQSASLELFVLRL
Sbjct: 339 QNEPIISEAEKVQQFYNLLTTSVDVIKQFADKLPGFSDLSSDDQELLFQSASLELFVLRL 398
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALT 333
+YR R +DTK+ FCNGVVL K QCQRSFG DWLNAILEF +SLH MEIDISAFACLCALT
Sbjct: 399 SYRARIDDTKMTFCNGVVLHKHQCQRSFG-DWLNAILEFSKSLHSMEIDISAFACLCALT 457
Query: 334 LI 335
L+
Sbjct: 458 LV 459
>gi|350427740|ref|XP_003494862.1| PREDICTED: hypothetical protein LOC100741960 [Bombus impatiens]
Length = 790
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 218/334 (65%), Positives = 244/334 (73%), Gaps = 48/334 (14%)
Query: 6 SSSSESPKLRHSAPLSSAS----SSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCE 61
S S+ESPK R + + S S ++ PPSPSQLCAVCGD AACQHYGVRTCE
Sbjct: 415 SGSTESPKARGGSGGTGNSVSSPSPGSTTSNERAPPSPSQLCAVCGDTAACQHYGVRTCE 474
Query: 62 GCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGR 121
GCKGFFKRTVQKGSKYVCLA+KACPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSL+GR
Sbjct: 475 GCKGFFKRTVQKGSKYVCLAEKACPVDKRRRNRCQFCRFQKCLMVGMVKEVVRTDSLRGR 534
Query: 122 RGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHF 181
RGRLPSKPKSPQESPPS PVSLITAL +R
Sbjct: 535 RGRLPSKPKSPQESPPSSPVSLITAL------------------------------VRAH 564
Query: 182 ADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH 241
D P DQ L S YR+ +P +PPI E EK QQFY+LLTTS+DVIR
Sbjct: 565 LDTTP--------DQATLDYSQ-----YRQSSPGDPPITEAEKTQQFYNLLTTSIDVIRT 611
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSF 301
FADKIPGF+DL +EDQELLFQSASLELFVLRLAYRT+ EDTKL FCNGVVL +QCQRSF
Sbjct: 612 FADKIPGFTDLVREDQELLFQSASLELFVLRLAYRTKPEDTKLTFCNGVVLALEQCQRSF 671
Query: 302 GDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G DWL++ILEF ++LH++++D SAFACLCALTL+
Sbjct: 672 G-DWLHSILEFSKALHILDVDTSAFACLCALTLV 704
>gi|328794461|ref|XP_623628.3| PREDICTED: probable nuclear hormone receptor HR38-like, partial
[Apis mellifera]
Length = 704
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/300 (70%), Positives = 231/300 (77%), Gaps = 44/300 (14%)
Query: 36 PPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRC 95
PPSPSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLA+KACPVDKRRRNRC
Sbjct: 363 PPSPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAEKACPVDKRRRNRC 422
Query: 96 QFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLE 155
QFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPS PVSLITAL
Sbjct: 423 QFCRFQKCLMVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSSPVSLITAL-------- 474
Query: 156 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
+R D P DQ L S YR+P+P
Sbjct: 475 ----------------------VRAHLDTTP--------DQASLDYSQ-----YRQPSPG 499
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
+PPI E EK QQFY+LLTTS+DVIR FADKIPGF+DL +EDQELLFQSASLELFVLRLAY
Sbjct: 500 DPPITEAEKTQQFYNLLTTSIDVIRTFADKIPGFTDLVREDQELLFQSASLELFVLRLAY 559
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
RT+ EDTKL FCNGVVL +QCQRSFG DWL++ILEF ++LH++++D SAFACLCALTL+
Sbjct: 560 RTKPEDTKLTFCNGVVLALEQCQRSFG-DWLHSILEFSKALHILDVDASAFACLCALTLV 618
>gi|328779598|ref|XP_623987.3| PREDICTED: probable nuclear hormone receptor HR38 [Apis mellifera]
Length = 651
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/300 (70%), Positives = 231/300 (77%), Gaps = 44/300 (14%)
Query: 36 PPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRC 95
PPSPSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLA+KACPVDKRRRNRC
Sbjct: 310 PPSPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAEKACPVDKRRRNRC 369
Query: 96 QFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLE 155
QFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPS PVSLITAL
Sbjct: 370 QFCRFQKCLMVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSSPVSLITAL-------- 421
Query: 156 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
+R D P DQ L S YR+P+P
Sbjct: 422 ----------------------VRAHLDTTP--------DQASLDYSQ-----YRQPSPG 446
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
+PPI E EK QQFY+LLTTS+DVIR FADKIPGF+DL +EDQELLFQSASLELFVLRLAY
Sbjct: 447 DPPITEAEKTQQFYNLLTTSIDVIRTFADKIPGFTDLVREDQELLFQSASLELFVLRLAY 506
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
RT+ EDTKL FCNGVVL +QCQRSFG DWL++ILEF ++LH++++D SAFACLCALTL+
Sbjct: 507 RTKPEDTKLTFCNGVVLALEQCQRSFG-DWLHSILEFSKALHILDVDASAFACLCALTLV 565
>gi|340723425|ref|XP_003400090.1| PREDICTED: hypothetical protein LOC100642535 [Bombus terrestris]
Length = 790
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 209/300 (69%), Positives = 230/300 (76%), Gaps = 44/300 (14%)
Query: 36 PPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRC 95
PPSPSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLA+KACPVDKRRRNRC
Sbjct: 449 PPSPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAEKACPVDKRRRNRC 508
Query: 96 QFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLE 155
QFCRFQKCL VGMVKEVVRTDSL+GRRGRLPSKPKSPQESPPS PVSLITAL
Sbjct: 509 QFCRFQKCLMVGMVKEVVRTDSLRGRRGRLPSKPKSPQESPPSSPVSLITAL-------- 560
Query: 156 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
+R D P DQ L S YR+ +P
Sbjct: 561 ----------------------VRAHLDTTP--------DQATLDYSQ-----YRQSSPG 585
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
+PPI E EK QQFY+LLTTS+DVIR FADKIPGF+DL +EDQELLFQSASLELFVLRLAY
Sbjct: 586 DPPITEAEKTQQFYNLLTTSIDVIRTFADKIPGFTDLVREDQELLFQSASLELFVLRLAY 645
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
RT+ EDTKL FCNGVVL +QCQRSFG DWL++ILEF ++LH++++D SAFACLCALTL+
Sbjct: 646 RTKPEDTKLTFCNGVVLALEQCQRSFG-DWLHSILEFSKALHILDVDTSAFACLCALTLV 704
>gi|195387014|ref|XP_002052199.1| GJ17428 [Drosophila virilis]
gi|194148656|gb|EDW64354.1| GJ17428 [Drosophila virilis]
Length = 878
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 203/309 (65%), Positives = 226/309 (73%), Gaps = 52/309 (16%)
Query: 35 TPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNR 94
T P+ SQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK+CPVDKRRRNR
Sbjct: 528 THPNASQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKSCPVDKRRRNR 587
Query: 95 CQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPL 154
CQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 588 CQFCRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL------- 640
Query: 155 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREP-N 213
+R D P S L Y EP +
Sbjct: 641 -----------------------VRSHVDTTPDPSCLDYT-------------HYEEPLD 664
Query: 214 PLEPP-------IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
PL PP ++E +K+QQFY LL++SVDVI+ FA+KIPG+ +L EDQELLFQSASL
Sbjct: 665 PLTPPNVASGLGLSEADKVQQFYQLLSSSVDVIKQFAEKIPGYLELTPEDQELLFQSASL 724
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAF 326
ELFVLRL+YR R++DTK+IFCNG VL + QCQRSFG DWLN I+EF +SLH +EIDISAF
Sbjct: 725 ELFVLRLSYRARSDDTKMIFCNGTVLHRNQCQRSFG-DWLNGIMEFSRSLHNLEIDISAF 783
Query: 327 ACLCALTLI 335
ACLCALTLI
Sbjct: 784 ACLCALTLI 792
>gi|195119101|ref|XP_002004070.1| GI19631 [Drosophila mojavensis]
gi|193914645|gb|EDW13512.1| GI19631 [Drosophila mojavensis]
Length = 981
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 203/304 (66%), Positives = 223/304 (73%), Gaps = 52/304 (17%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
SQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK+CPVDKRRRNRCQFCR
Sbjct: 636 SQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKSCPVDKRRRNRCQFCR 695
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
FQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 696 FQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL------------ 743
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREP-NPLEPP 218
+R D P D L S Y EP + + PP
Sbjct: 744 ------------------VRSHVDTTP--------DPSCLDYS-----HYVEPQDSVTPP 772
Query: 219 -------IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVL 271
++E EK+QQFY LLT+SVDVIR FA+KIPG+ +L EDQELLFQSASLELFVL
Sbjct: 773 TLANPLGLSEAEKVQQFYQLLTSSVDVIRQFAEKIPGYLELTSEDQELLFQSASLELFVL 832
Query: 272 RLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
RL+YR R++DTK+IFCNG VL + QCQRSFG DWLN I+EF +SLH +EIDISAFACLCA
Sbjct: 833 RLSYRARSDDTKMIFCNGTVLHRTQCQRSFG-DWLNGIMEFSRSLHNLEIDISAFACLCA 891
Query: 332 LTLI 335
LTLI
Sbjct: 892 LTLI 895
>gi|194759963|ref|XP_001962211.1| GF14553 [Drosophila ananassae]
gi|190615908|gb|EDV31432.1| GF14553 [Drosophila ananassae]
Length = 1093
Score = 362 bits (929), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 201/299 (67%), Positives = 220/299 (73%), Gaps = 49/299 (16%)
Query: 37 PSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQ 96
P+PSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK CPVDKRRRNRCQ
Sbjct: 758 PAPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQ 817
Query: 97 FCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEP 156
FCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 818 FCRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL--------- 868
Query: 157 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
+R D P S L E E
Sbjct: 869 ---------------------VRSHVDTTPDPSCLDYTHYE------------------E 889
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
P ++E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRL+YR
Sbjct: 890 PSMSEADKVQQFYHLLTSSVDVIKQFAEKIPGYLDLTPEDQELLFQSASLELFVLRLSYR 949
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R++DTKLIFCNG VL + QCQRSFG +WLN I+EF +SLH +EIDISAFACLCALTLI
Sbjct: 950 ARSDDTKLIFCNGTVLHRSQCQRSFG-EWLNDIMEFSRSLHSLEIDISAFACLCALTLI 1007
>gi|195030112|ref|XP_001987912.1| GH10850 [Drosophila grimshawi]
gi|193903912|gb|EDW02779.1| GH10850 [Drosophila grimshawi]
Length = 1161
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 202/306 (66%), Positives = 222/306 (72%), Gaps = 52/306 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
S SQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK+CPVDKRRRNRCQF
Sbjct: 814 SSSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKSCPVDKRRRNRCQF 873
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 874 CRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL---------- 923
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREP-NPLE 216
+R D P S L Y EP +PL
Sbjct: 924 --------------------VRSHVDTTPDPSCLDYT-------------HYEEPLDPLT 950
Query: 217 PPI-------AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 269
PPI +E +K+ QFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELF
Sbjct: 951 PPIVASALAMSEADKVHQFYQLLTSSVDVIKQFAEKIPGYLDLTSEDQELLFQSASLELF 1010
Query: 270 VLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACL 329
VLRL+YR R+++TK+IFCNG VL + QCQRSFG DWLN I+EF +SL +EIDISAFACL
Sbjct: 1011 VLRLSYRARSDETKMIFCNGTVLHRNQCQRSFG-DWLNGIMEFSRSLQNLEIDISAFACL 1069
Query: 330 CALTLI 335
CALTLI
Sbjct: 1070 CALTLI 1075
>gi|195434034|ref|XP_002065008.1| GK14909 [Drosophila willistoni]
gi|194161093|gb|EDW75994.1| GK14909 [Drosophila willistoni]
Length = 878
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 203/298 (68%), Positives = 220/298 (73%), Gaps = 49/298 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
S SQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK CPVDKRRRNRCQF
Sbjct: 544 STSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQF 603
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 604 CRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL---------- 653
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
+R D P DQ L S Y EP+
Sbjct: 654 --------------------VRSHVDTTP--------DQSCLDYS-----HYEEPS---- 676
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
++E EKIQQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSA LELFVLRL+YR
Sbjct: 677 -MSEAEKIQQFYQLLTSSVDVIKQFAEKIPGYMDLTHEDQELLFQSALLELFVLRLSYRA 735
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R++DTKLIFCNG+VL + QCQRSFG DWLN I+EF +SL +EIDISAFACLCALTLI
Sbjct: 736 RSDDTKLIFCNGIVLHRNQCQRSFG-DWLNDIMEFSRSLDNLEIDISAFACLCALTLI 792
>gi|195351909|ref|XP_002042458.1| GM23314 [Drosophila sechellia]
gi|194124327|gb|EDW46370.1| GM23314 [Drosophila sechellia]
Length = 1075
Score = 356 bits (913), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 210/334 (62%), Positives = 231/334 (69%), Gaps = 50/334 (14%)
Query: 3 LGRSSSSESPKLRHSAPLSSASSSPGCD-TSRPTPPSPSQLCAVCGDIAACQHYGVRTCE 61
LG+ S +SAP S+ASS D + +PSQLCAVCGD AACQHYGVRTCE
Sbjct: 705 LGQRHSHAHALQLNSAPNSAASSPASVDLQAGRLLQAPSQLCAVCGDTAACQHYGVRTCE 764
Query: 62 GCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGR 121
GCKGFFKRTVQKGSKYVCLADK CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGR
Sbjct: 765 GCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQFCRFQKCLVVGMVKEVVRTDSLKGR 824
Query: 122 RGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHF 181
RGRLPSKPKSPQESPPSPP+SLITAL +R
Sbjct: 825 RGRLPSKPKSPQESPPSPPISLITAL------------------------------VRSH 854
Query: 182 ADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH 241
D P S L E E ++E +K+QQFY LLT+SVDVI+
Sbjct: 855 VDTTPDPSCLDYSHYE------------------EQSMSEADKVQQFYQLLTSSVDVIKQ 896
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSF 301
FA+KIPG+ DL EDQELLFQSASLELFVLRLAYR R +DTKLIFCNG VL + QC RSF
Sbjct: 897 FAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARIDDTKLIFCNGTVLHRTQCLRSF 956
Query: 302 GDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G +WLN I+EF +SLH +EIDISAFACLCALTLI
Sbjct: 957 G-EWLNDIMEFSRSLHNLEIDISAFACLCALTLI 989
>gi|198474923|ref|XP_001356865.2| GA15026 [Drosophila pseudoobscura pseudoobscura]
gi|198138606|gb|EAL33931.2| GA15026 [Drosophila pseudoobscura pseudoobscura]
Length = 1132
Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 197/296 (66%), Positives = 217/296 (73%), Gaps = 49/296 (16%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
SQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK CPVDKRRRNRCQFCR
Sbjct: 800 SQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKMCPVDKRRRNRCQFCR 859
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
FQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 860 FQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL------------ 907
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+R D P S L E EP +
Sbjct: 908 ------------------VRSHVDTTPDPSCLDYTHYE------------------EPSM 931
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRL+YR R+
Sbjct: 932 SEADKVQQFYHLLTSSVDVIKQFAEKIPGYLDLTPEDQELLFQSASLELFVLRLSYRARS 991
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+DTK+IFCNG VL + QCQRSFG +WLN I++F +SLH +EIDISAFACLCALTLI
Sbjct: 992 DDTKMIFCNGTVLHRSQCQRSFG-EWLNDIMDFSRSLHSLEIDISAFACLCALTLI 1046
>gi|17137128|ref|NP_477119.1| hormone receptor-like in 38, isoform B [Drosophila melanogaster]
gi|7298701|gb|AAF53914.1| hormone receptor-like in 38, isoform B [Drosophila melanogaster]
Length = 1078
Score = 353 bits (905), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 199/298 (66%), Positives = 216/298 (72%), Gaps = 49/298 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+PSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK CPVDKRRRNRCQF
Sbjct: 744 APSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQF 803
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 804 CRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL---------- 853
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
+R D P S L E E
Sbjct: 854 --------------------VRSHVDTTPDPSCLDYSHYE------------------EQ 875
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
++E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRLAYR
Sbjct: 876 SMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRA 935
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R +DTKLIFCNG VL + QC RSFG +WLN I+EF +SLH +EIDISAFACLCALTLI
Sbjct: 936 RIDDTKLIFCNGTVLHRTQCLRSFG-EWLNDIMEFSRSLHNLEIDISAFACLCALTLI 992
>gi|3334657|emb|CAA05172.1| hormone receptor 38 [Drosophila melanogaster]
Length = 1073
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 199/298 (66%), Positives = 216/298 (72%), Gaps = 49/298 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+PSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK CPVDKRRRNRCQF
Sbjct: 739 APSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQF 798
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 799 CRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL---------- 848
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
+R D P S L E E
Sbjct: 849 --------------------VRSHVDTTPDPSCLDYSHYE------------------EQ 870
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
++E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRLAYR
Sbjct: 871 SMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRA 930
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R +DTKLIFCNG VL + QC RSFG +WLN I+EF +SLH +EIDISAFACLCALTLI
Sbjct: 931 RIDDTKLIFCNGTVLHRTQCLRSFG-EWLNDIMEFSRSLHNLEIDISAFACLCALTLI 987
>gi|12644294|sp|P49869.3|HR38_DROME RecName: Full=Probable nuclear hormone receptor HR38; Short=dHR38;
AltName: Full=Nuclear receptor subfamily 4 group A
member 4
Length = 1073
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 199/298 (66%), Positives = 216/298 (72%), Gaps = 49/298 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+PSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK CPVDKRRRNRCQF
Sbjct: 739 APSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQF 798
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 799 CRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL---------- 848
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
+R D P S L E E
Sbjct: 849 --------------------VRSHVDTTPDPSCLDYSHYE------------------EQ 870
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
++E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRLAYR
Sbjct: 871 SMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRA 930
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R +DTKLIFCNG VL + QC RSFG +WLN I+EF +SLH +EIDISAFACLCALTLI
Sbjct: 931 RIDDTKLIFCNGTVLHRTQCLRSFG-EWLNDIMEFSRSLHNLEIDISAFACLCALTLI 987
>gi|195485831|ref|XP_002091251.1| GE13549 [Drosophila yakuba]
gi|194177352|gb|EDW90963.1| GE13549 [Drosophila yakuba]
Length = 1059
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 199/298 (66%), Positives = 216/298 (72%), Gaps = 49/298 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+PSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK CPVDKRRRNRCQF
Sbjct: 725 APSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQF 784
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 785 CRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL---------- 834
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
+R D P S L E E
Sbjct: 835 --------------------VRSHVDTTPDPSCLDYSHYE------------------EQ 856
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
++E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRLAYR
Sbjct: 857 SMSEADKVQQFYHLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRA 916
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R +DTKLIFCNG VL + QC RSFG +WLN I+EF +SLH +EIDISAFACLCALTLI
Sbjct: 917 RIDDTKLIFCNGTVLHRTQCLRSFG-EWLNDIMEFSRSLHSLEIDISAFACLCALTLI 973
>gi|194878774|ref|XP_001974125.1| GG21557 [Drosophila erecta]
gi|190657312|gb|EDV54525.1| GG21557 [Drosophila erecta]
Length = 1136
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 199/298 (66%), Positives = 216/298 (72%), Gaps = 49/298 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+PSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK CPVDKRRRNRCQF
Sbjct: 802 APSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQF 861
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 862 CRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL---------- 911
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
+R D P S L E E
Sbjct: 912 --------------------VRSHVDTTPDPSCLDYSHYE------------------EQ 933
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
++E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRLAYR
Sbjct: 934 SMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRA 993
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R +DTKLIFCNG VL + QC RSFG +WLN I+EF +SLH +EIDISAFACLCALTLI
Sbjct: 994 RIDDTKLIFCNGTVLHRTQCLRSFG-EWLNDIMEFSRSLHNLEIDISAFACLCALTLI 1050
>gi|281365278|ref|NP_001163024.1| hormone receptor-like in 38, isoform D [Drosophila melanogaster]
gi|272407117|gb|ACZ94310.1| hormone receptor-like in 38, isoform D [Drosophila melanogaster]
Length = 836
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 199/298 (66%), Positives = 216/298 (72%), Gaps = 49/298 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+PSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK CPVDKRRRNRCQF
Sbjct: 502 APSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQF 561
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 562 CRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL---------- 611
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
+R D P S L E E
Sbjct: 612 --------------------VRSHVDTTPDPSCLDYSHYE------------------EQ 633
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
++E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRLAYR
Sbjct: 634 SMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRA 693
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R +DTKLIFCNG VL + QC RSFG +WLN I+EF +SLH +EIDISAFACLCALTLI
Sbjct: 694 RIDDTKLIFCNGTVLHRTQCLRSFG-EWLNDIMEFSRSLHNLEIDISAFACLCALTLI 750
>gi|1036837|gb|AAC46926.1| DHR38, partial [Drosophila melanogaster]
Length = 546
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 199/298 (66%), Positives = 216/298 (72%), Gaps = 49/298 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+PSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK CPVDKRRRNRCQF
Sbjct: 212 APSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQF 271
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 272 CRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL---------- 321
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
+R D P S L E E
Sbjct: 322 --------------------VRSHVDTTPDPSCLDYSHYE------------------EQ 343
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
++E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRLAYR
Sbjct: 344 SMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRA 403
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R +DTKLIFCNG VL + QC RSFG +WLN I+EF +SLH +EIDISAFACLCALTLI
Sbjct: 404 RIDDTKLIFCNGTVLHRTQCLRSFG-EWLNDIMEFSRSLHNLEIDISAFACLCALTLI 460
>gi|195580475|ref|XP_002080061.1| GD21688 [Drosophila simulans]
gi|194192070|gb|EDX05646.1| GD21688 [Drosophila simulans]
Length = 556
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 199/298 (66%), Positives = 216/298 (72%), Gaps = 49/298 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+PSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK CPVDKRRRNRCQF
Sbjct: 222 APSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQF 281
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 282 CRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL---------- 331
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
+R D P S L E E
Sbjct: 332 --------------------VRSHVDTTPDPSCLDYSHYE------------------EQ 353
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
++E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRLAYR
Sbjct: 354 SMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRA 413
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R +DTKLIFCNG VL + QC RSFG +WLN I+EF +SLH +EIDISAFACLCALTLI
Sbjct: 414 RIDDTKLIFCNGTVLHRTQCLRSFG-EWLNDIMEFSRSLHNLEIDISAFACLCALTLI 470
>gi|2133651|pir||S58238 DHR38 protein - fruit fly (Drosophila melanogaster)
gi|929562|emb|CAA61534.1| DHR38 [Drosophila melanogaster]
Length = 551
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 199/298 (66%), Positives = 216/298 (72%), Gaps = 49/298 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+PSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK CPVDKRRRNRCQF
Sbjct: 217 APSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQF 276
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 277 CRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL---------- 326
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
+R D P S L E E
Sbjct: 327 --------------------VRSHVDTTPDPSCLDYSHYE------------------EQ 348
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
++E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRLAYR
Sbjct: 349 SMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRA 408
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R +DTKLIFCNG VL + QC RSFG +WLN I+EF +SLH +EIDISAFACLCALTLI
Sbjct: 409 RIDDTKLIFCNGTVLHRTQCLRSFG-EWLNDIMEFSRSLHNLEIDISAFACLCALTLI 465
>gi|2645018|emb|CAA75690.1| hormone receptor 38 [Drosophila melanogaster]
Length = 552
Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 199/298 (66%), Positives = 216/298 (72%), Gaps = 49/298 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+PSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK CPVDKRRRNRCQF
Sbjct: 218 APSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQF 277
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 278 CRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL---------- 327
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
+R D P S L E E
Sbjct: 328 --------------------VRSHVDTTPDPSCLDYSHYE------------------EQ 349
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
++E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRLAYR
Sbjct: 350 SMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRA 409
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R +DTKLIFCNG VL + QC RSFG +WLN I+EF +SLH +EIDISAFACLCALTLI
Sbjct: 410 RIDDTKLIFCNGTVLHRTQCLRSFG-EWLNDIMEFSRSLHNLEIDISAFACLCALTLI 466
>gi|427796259|gb|JAA63581.1| Putative nuclear receptor of the nerve growth factor-induced
protein b type, partial [Rhipicephalus pulchellus]
Length = 705
Score = 333 bits (855), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 194/322 (60%), Positives = 222/322 (68%), Gaps = 49/322 (15%)
Query: 18 APLSSASSSPGCDTSRPTPPSPS----QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQK 73
AP S+ + P +S + P P+ QLCAVCGD AACQHYGVRTCEGCKGFFKRTVQK
Sbjct: 343 APPSAPGTPPASGSSTASSPPPATPSYQLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQK 402
Query: 74 GSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQ 133
G+KYVCLA++ CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQ
Sbjct: 403 GAKYVCLANRDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQ 462
Query: 134 ESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 193
ESPPSPPVSLITAL +R D P DL
Sbjct: 463 ESPPSPPVSLITAL------------------------------VRAHVDTSP---DLAN 489
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 253
D L + P++ ++QQFY+LLT+SVDVI+ F++KIPGF++L
Sbjct: 490 RDYSLC-----------QEMPVDESRRTAAEVQQFYNLLTSSVDVIKTFSEKIPGFNELE 538
Query: 254 KEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFC 313
K DQELLFQSASLELF LRLAYR R ED + FCNGVVL + QC+R FG +WL AI EF
Sbjct: 539 KSDQELLFQSASLELFALRLAYRIRQEDDEFTFCNGVVLHRTQCERIFG-EWLAAIFEFS 597
Query: 314 QSLHLMEIDISAFACLCALTLI 335
+SLH M+IDISAFACL ALTL+
Sbjct: 598 RSLHAMQIDISAFACLAALTLV 619
>gi|427795311|gb|JAA63107.1| Putative nuclear receptor of the nerve growth factor-induced
protein b type, partial [Rhipicephalus pulchellus]
Length = 700
Score = 333 bits (854), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 194/322 (60%), Positives = 222/322 (68%), Gaps = 49/322 (15%)
Query: 18 APLSSASSSPGCDTSRPTPPSPS----QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQK 73
AP S+ + P +S + P P+ QLCAVCGD AACQHYGVRTCEGCKGFFKRTVQK
Sbjct: 338 APPSAPGTPPASGSSTASSPPPATPSYQLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQK 397
Query: 74 GSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQ 133
G+KYVCLA++ CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQ
Sbjct: 398 GAKYVCLANRDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQ 457
Query: 134 ESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 193
ESPPSPPVSLITAL +R D P DL
Sbjct: 458 ESPPSPPVSLITAL------------------------------VRAHVDTSP---DLAN 484
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 253
D L + P++ ++QQFY+LLT+SVDVI+ F++KIPGF++L
Sbjct: 485 RDYSLC-----------QEMPVDESRRTAAEVQQFYNLLTSSVDVIKTFSEKIPGFNELE 533
Query: 254 KEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFC 313
K DQELLFQSASLELF LRLAYR R ED + FCNGVVL + QC+R FG +WL AI EF
Sbjct: 534 KSDQELLFQSASLELFALRLAYRIRQEDDEFTFCNGVVLHRTQCERIFG-EWLAAIFEFS 592
Query: 314 QSLHLMEIDISAFACLCALTLI 335
+SLH M+IDISAFACL ALTL+
Sbjct: 593 RSLHAMQIDISAFACLAALTLV 614
>gi|427788989|gb|JAA59946.1| Putative nuclear receptor of the nerve growth factor-induced
protein b type [Rhipicephalus pulchellus]
Length = 667
Score = 333 bits (853), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 194/322 (60%), Positives = 222/322 (68%), Gaps = 49/322 (15%)
Query: 18 APLSSASSSPGCDTSRPTPPSPS----QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQK 73
AP S+ + P +S + P P+ QLCAVCGD AACQHYGVRTCEGCKGFFKRTVQK
Sbjct: 305 APPSAPGTPPASGSSTASSPPPATPSYQLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQK 364
Query: 74 GSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQ 133
G+KYVCLA++ CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQ
Sbjct: 365 GAKYVCLANRDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQ 424
Query: 134 ESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 193
ESPPSPPVSLITAL +R D P DL
Sbjct: 425 ESPPSPPVSLITAL------------------------------VRAHVDTSP---DLAN 451
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 253
D L + P++ ++QQFY+LLT+SVDVI+ F++KIPGF++L
Sbjct: 452 RDYSLC-----------QEMPVDESRRTAAEVQQFYNLLTSSVDVIKTFSEKIPGFNELE 500
Query: 254 KEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFC 313
K DQELLFQSASLELF LRLAYR R ED + FCNGVVL + QC+R FG +WL AI EF
Sbjct: 501 KSDQELLFQSASLELFALRLAYRIRQEDDEFTFCNGVVLHRTQCERIFG-EWLAAIFEFS 559
Query: 314 QSLHLMEIDISAFACLCALTLI 335
+SLH M+IDISAFACL ALTL+
Sbjct: 560 RSLHAMQIDISAFACLAALTLV 581
>gi|427796263|gb|JAA63583.1| Putative nuclear receptor of the nerve growth factor-induced
protein b type, partial [Rhipicephalus pulchellus]
Length = 686
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 194/322 (60%), Positives = 222/322 (68%), Gaps = 49/322 (15%)
Query: 18 APLSSASSSPGCDTSRPTPPSPS----QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQK 73
AP S+ + P +S + P P+ QLCAVCGD AACQHYGVRTCEGCKGFFKRTVQK
Sbjct: 324 APPSAPGTPPASGSSTASSPPPATPSYQLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQK 383
Query: 74 GSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQ 133
G+KYVCLA++ CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQ
Sbjct: 384 GAKYVCLANRDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQ 443
Query: 134 ESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 193
ESPPSPPVSLITAL +R D P DL
Sbjct: 444 ESPPSPPVSLITAL------------------------------VRAHVDTSP---DLAN 470
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 253
D L + P++ ++QQFY+LLT+SVDVI+ F++KIPGF++L
Sbjct: 471 RDYSLC-----------QEMPVDESRRTAAEVQQFYNLLTSSVDVIKTFSEKIPGFNELE 519
Query: 254 KEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFC 313
K DQELLFQSASLELF LRLAYR R ED + FCNGVVL + QC+R FG +WL AI EF
Sbjct: 520 KSDQELLFQSASLELFALRLAYRIRQEDDEFTFCNGVVLHRTQCERIFG-EWLAAIFEFS 578
Query: 314 QSLHLMEIDISAFACLCALTLI 335
+SLH M+IDISAFACL ALTL+
Sbjct: 579 RSLHAMQIDISAFACLAALTLV 600
>gi|241680439|ref|XP_002400899.1| retinoid X receptor, putative [Ixodes scapularis]
gi|215504293|gb|EEC13787.1| retinoid X receptor, putative [Ixodes scapularis]
Length = 594
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 190/295 (64%), Positives = 211/295 (71%), Gaps = 44/295 (14%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
QLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKG+KYVCLA++ CPVDKRRRNRCQFCRF
Sbjct: 258 QLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKGAKYVCLANRDCPVDKRRRNRCQFCRF 317
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL
Sbjct: 318 QKCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL------------- 364
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
+R D P DL D + + A L L R +
Sbjct: 365 -----------------VRAHVDTSP---DLVNRDYSSVSERALLRLLLRTAS------- 397
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
++QQFYSLLT+SVD I+ F++KIPGFS+L + DQELLFQSASLELF LRLAYR R +
Sbjct: 398 ---EVQQFYSLLTSSVDYIKAFSEKIPGFSELDRSDQELLFQSASLELFALRLAYRIRQD 454
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
D + FCNGVVL + QC+R FG DWL AI EF QSLH M+IDISAFACL ALTL+
Sbjct: 455 DDEFTFCNGVVLHRSQCERIFG-DWLGAIFEFSQSLHAMQIDISAFACLAALTLV 508
>gi|410920101|ref|XP_003973522.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
[Takifugu rubripes]
Length = 625
Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 177/327 (54%), Positives = 212/327 (64%), Gaps = 54/327 (16%)
Query: 10 ESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKR 69
ESP + A S + +PG SR CAVCGD A+CQHYGVRTCEGCKGFFKR
Sbjct: 264 ESPLTVNRAMTCSKTQNPGATESR---------CAVCGDNASCQHYGVRTCEGCKGFFKR 314
Query: 70 TVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKP 129
TVQK +KYVCLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKP
Sbjct: 315 TVQKNAKYVCLANKNCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKP 374
Query: 130 KSPQE-SPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGF 188
K E S P V+++ +L R P I EK+
Sbjct: 375 KVLTEPSSTVPSVNIVASLVRAHLDSNPTI---EKL------------------------ 407
Query: 189 SDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 248
D K +Q ++ +L +E + IQQFY LLT S+DVIR++A+ +PG
Sbjct: 408 -DYSK------YQESTGDLKEKE---------DASDIQQFYDLLTGSLDVIRNWAETVPG 451
Query: 249 FSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNA 308
F+D CKEDQELL +SA +ELF+LRLAYR+ E KLIFCNGVVL + QC SFG DW+++
Sbjct: 452 FTDFCKEDQELLLESAFVELFILRLAYRSNPEKNKLIFCNGVVLHRLQCVHSFG-DWIDS 510
Query: 309 ILEFCQSLHLMEIDISAFACLCALTLI 335
I++F QSLH M +DIS FACL AL +I
Sbjct: 511 IMDFSQSLHRMNLDISLFACLAALVII 537
>gi|260819730|ref|XP_002605189.1| hypothetical protein BRAFLDRAFT_223708 [Branchiostoma floridae]
gi|229290520|gb|EEN61199.1| hypothetical protein BRAFLDRAFT_223708 [Branchiostoma floridae]
Length = 359
Score = 320 bits (820), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 179/297 (60%), Positives = 206/297 (69%), Gaps = 50/297 (16%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCL +K CPVDKRRRNRCQFCRFQK
Sbjct: 23 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLGNKNCPVDKRRRNRCQFCRFQK 82
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP-VSLITALYR---EPNPLEPPI 158
CL VGMVKEVVRTDSLKGRRGRLPSKPKSPQE P P VSLITAL R + +P P +
Sbjct: 83 CLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQEQSPPSPPVSLITALVRAHVDSSPSPPTL 142
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
Y+L K+PG E P
Sbjct: 143 N--------YNLF------------KMPGEEG-------------------------ESP 157
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ E++QQFY LL +S++VIR +A+KIPGF DL KEDQELLFQSA LELFVLRLAYR+
Sbjct: 158 KSDTERVQQFYDLLCSSIEVIRTWAEKIPGFPDLLKEDQELLFQSACLELFVLRLAYRSA 217
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ +L+FCNG VL +QQC RSFG +W+N I+EF +SLH M +DISAFAC+ AL LI
Sbjct: 218 PSEERLVFCNGAVLHQQQCVRSFG-EWINYIMEFSKSLHAMNVDISAFACMAALVLI 273
>gi|50345002|ref|NP_001002173.1| nuclear receptor subfamily 4 group A member 1 [Danio rerio]
gi|49256697|gb|AAH74092.1| Nuclear receptor subfamily 4, group A, member 1 [Danio rerio]
gi|182889142|gb|AAI64696.1| Nr4a1 protein [Danio rerio]
Length = 574
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 172/303 (56%), Positives = 200/303 (66%), Gaps = 47/303 (15%)
Query: 35 TPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNR 94
+P CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNR
Sbjct: 231 SPTGNEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKDCPVDKRRRNR 290
Query: 95 CQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPP-SPPVSLITALYREPNP 153
CQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK+ Q+S S PV++I +L
Sbjct: 291 CQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKAVQDSVSVSSPVNIIASL------ 344
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF-YREP 212
V H D P SA+L+ Y+E
Sbjct: 345 -----------------------VTAHI-DSNPA--------------SANLDYSKYQES 366
Query: 213 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
P + IQQFY LLT S+DVIR +A IPGFS CKEDQELL +SA +ELF+LR
Sbjct: 367 TSGLPEKEDANDIQQFYDLLTGSMDVIRKWAGSIPGFSAFCKEDQELLLESAFVELFILR 426
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
LAYR+ E KLIFCNGVVL + QC RSFG DW+++I+EF QSLH + +DISAF+CL L
Sbjct: 427 LAYRSNPETDKLIFCNGVVLHRTQCVRSFG-DWIDSIMEFSQSLHRLNLDISAFSCLATL 485
Query: 333 TLI 335
+I
Sbjct: 486 VII 488
>gi|195148572|ref|XP_002015247.1| GL19597 [Drosophila persimilis]
gi|194107200|gb|EDW29243.1| GL19597 [Drosophila persimilis]
Length = 1004
Score = 316 bits (810), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 178/273 (65%), Positives = 196/273 (71%), Gaps = 49/273 (17%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
SQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK CPVDKRRRNRCQFCR
Sbjct: 772 SQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKMCPVDKRRRNRCQFCR 831
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
FQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP+SLITAL
Sbjct: 832 FQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPISLITAL------------ 879
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+R D P S L E EP +
Sbjct: 880 ------------------VRSHVDTTPDPSCLDYTHYE------------------EPSM 903
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRL+YR R+
Sbjct: 904 SEADKVQQFYHLLTSSVDVIKQFAEKIPGYLDLTPEDQELLFQSASLELFVLRLSYRARS 963
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEF 312
+DTK+IFCNG VL + QCQRSFG +WLN I++F
Sbjct: 964 DDTKMIFCNGTVLHRSQCQRSFG-EWLNDIMDF 995
>gi|410900061|ref|XP_003963515.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
[Takifugu rubripes]
Length = 573
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/302 (55%), Positives = 199/302 (65%), Gaps = 45/302 (14%)
Query: 35 TPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNR 94
+P CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK SKYVCLA+K CPVDKRRRNR
Sbjct: 230 SPSGTESCCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNSKYVCLANKDCPVDKRRRNR 289
Query: 95 CQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPS-PPVSLITALYREPNP 153
CQFCRFQKCL VGMV+EVVRTDSLKGRRGRLPSKPK+ QE S PVS+I +L R
Sbjct: 290 CQFCRFQKCLAVGMVREVVRTDSLKGRRGRLPSKPKAVQEVTTSVSPVSMIASLVRAHID 349
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
P IA+ +D ++ ++ S KE
Sbjct: 350 SNPSIAK--------------MDYSKYMETEV---SSNQKE------------------- 373
Query: 214 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
E I+QFY LLT S++VIR +A IPGF D C EDQELL +SA +ELF+LRL
Sbjct: 374 -------EASDIKQFYDLLTVSMEVIRKWAKSIPGFPDFCPEDQELLLESAFVELFILRL 426
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALT 333
AYR+ + KLIFCNG VL + QC R FG DW+++ILEF Q+LH M++D+S+F+CL AL
Sbjct: 427 AYRSNPDTEKLIFCNGTVLHRTQCVRGFG-DWIDSILEFSQALHRMKLDVSSFSCLTALV 485
Query: 334 LI 335
LI
Sbjct: 486 LI 487
>gi|50539872|ref|NP_001002406.1| nuclear receptor subfamily 4, group A, member 2b [Danio rerio]
gi|49903884|gb|AAH76176.1| Nuclear receptor subfamily 4, group A, member 2b [Danio rerio]
Length = 586
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/300 (56%), Positives = 202/300 (67%), Gaps = 45/300 (15%)
Query: 37 PSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQ 96
PS LCAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ
Sbjct: 252 PSSEGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQ 311
Query: 97 FCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPS-PPVSLITALYREPNPLE 155
+CRFQKCL VGMVKEVVRT SLKGRRGRLPSKPKSPQ+ P S PV+L+ AL R
Sbjct: 312 YCRFQKCLVVGMVKEVVRTASLKGRRGRLPSKPKSPQDIPVSFTPVNLLNALVRAHIDSN 371
Query: 156 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
P +A + YS TS + + S E +
Sbjct: 372 PSMARLD-----YSKFQTSPE-----------------------YHSGGDESLH------ 397
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
IQQFY LLT S+ +IR +A+KIPGF++L K DQELLF+SA LELFVLRLAY
Sbjct: 398 ---------IQQFYDLLTASMSIIRGWAEKIPGFTELPKCDQELLFESAFLELFVLRLAY 448
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R+ + KLIFCNG+VL K QC R FG +W+++I+EF +L M +D+SAF+C+ ALT++
Sbjct: 449 RSNLPEDKLIFCNGMVLHKLQCVRGFG-EWIDSIVEFSSNLQSMSLDVSAFSCIAALTIV 507
>gi|47222872|emb|CAF96539.1| unnamed protein product [Tetraodon nigroviridis]
Length = 591
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 173/331 (52%), Positives = 211/331 (63%), Gaps = 61/331 (18%)
Query: 10 ESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKR 69
ESP++ A S + + G SR CAVCGD A+CQHYGVRTCEGCKGFFKR
Sbjct: 229 ESPRMMVGAMTCSKTPNSGPAESR---------CAVCGDNASCQHYGVRTCEGCKGFFKR 279
Query: 70 TVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKP 129
TVQK +KY+CL +K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKP
Sbjct: 280 TVQKNAKYMCLTNKNCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKP 339
Query: 130 KSPQESPPS--PPVSLITALYR---EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 184
K E+ P+ P V+++ +L R + NP EK+ YS S ++
Sbjct: 340 KILPETSPTAVPSVNIVASLVRAHLDSNPTN------EKLN--YSKYQESAGDLKE---- 387
Query: 185 IPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 244
KED IQQFY LLT S++VIR++A+
Sbjct: 388 --------KEDAS--------------------------DIQQFYDLLTGSLEVIRNWAE 413
Query: 245 KIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDD 304
IPGF+D CK+DQELL +SA +ELF+LRLAYR+ E KL+FCNGVVL + QC SFG D
Sbjct: 414 TIPGFTDFCKDDQELLLESAFVELFILRLAYRSNPEKNKLVFCNGVVLHRLQCIHSFG-D 472
Query: 305 WLNAILEFCQSLHLMEIDISAFACLCALTLI 335
W+N+I++F QSLH M +D+S FACL AL +I
Sbjct: 473 WINSIMDFSQSLHRMNLDVSLFACLAALVII 503
>gi|348508022|ref|XP_003441554.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
isoform 1 [Oreochromis niloticus]
Length = 592
Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 173/327 (52%), Positives = 205/327 (62%), Gaps = 54/327 (16%)
Query: 10 ESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKR 69
ESPK A +S + +PG SR CAVCGD A+CQHYGVRTCEGCKGFFKR
Sbjct: 231 ESPKTAEGAMMSPKTPNPGSSESR---------CAVCGDNASCQHYGVRTCEGCKGFFKR 281
Query: 70 TVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKP 129
TVQK +KYVCLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKP
Sbjct: 282 TVQKNAKYVCLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKP 341
Query: 130 KSPQE-SPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGF 188
K P E S +P V++I +L R P I + + YS + D +
Sbjct: 342 KIPVEASSTTPSVNIIASLVRAHLDSSPTIGKLD-----YSKYRETADSSKE-------- 388
Query: 189 SDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 248
KED IQQFY LLT S+DVIR +A IPG
Sbjct: 389 ----KEDAG--------------------------DIQQFYDLLTGSLDVIRKWAQSIPG 418
Query: 249 FSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNA 308
F D C EDQELL +SA +ELF+LRLAY + E +LIFCNGVVL + QC RSFG DW+++
Sbjct: 419 FMDFCTEDQELLLESAFVELFILRLAYGSDPEKNELIFCNGVVLHRLQCARSFG-DWIDS 477
Query: 309 ILEFCQSLHLMEIDISAFACLCALTLI 335
I++F SL + +D+S F+CL AL +I
Sbjct: 478 IVDFSHSLRRLNLDVSLFSCLAALVII 504
>gi|327264363|ref|XP_003216983.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
[Anolis carolinensis]
Length = 584
Score = 313 bits (801), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 168/301 (55%), Positives = 204/301 (67%), Gaps = 47/301 (15%)
Query: 35 TPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNR 94
+P S CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNR
Sbjct: 245 SPGSNEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNR 304
Query: 95 CQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPL 154
CQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK Q++ P VSLI++L
Sbjct: 305 CQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQAQDTSP---VSLISSL------- 354
Query: 155 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNP 214
+R D IP + L D +S S + F +E
Sbjct: 355 -----------------------VRAHIDSIPSAAKL---DYSKFQESVSYQ-FEKE--- 384
Query: 215 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
+ +QQFY LLT S+DVIR +A+KI GF +L KEDQ+LL +SA LELF+LRLA
Sbjct: 385 ------DCVDVQQFYDLLTGSMDVIRKWAEKIQGFLELPKEDQDLLLESAFLELFILRLA 438
Query: 275 YRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
YR++ E+ KLIFCNGVVL + QC R FG +W+++I+EF Q+LH M ID+ +F+CL AL L
Sbjct: 439 YRSKPEEGKLIFCNGVVLHRMQCVRGFG-EWIDSIIEFSQNLHRMNIDVPSFSCLAALVL 497
Query: 335 I 335
I
Sbjct: 498 I 498
>gi|387017362|gb|AFJ50799.1| Nuclear receptor subfamily 4 group A member 1-like [Crotalus
adamanteus]
Length = 588
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 176/331 (53%), Positives = 214/331 (64%), Gaps = 58/331 (17%)
Query: 16 HSAPLSSASSSPGCDTS-------RPT----PPSPSQLCAVCGDIAACQHYGVRTCEGCK 64
H +PL + +SPG D S PT P S CAVCGD A+CQHYGVRTCEGCK
Sbjct: 219 HFSPLPLSQASPGLDGSGLMDSSLSPTKTRSPGSNEGRCAVCGDNASCQHYGVRTCEGCK 278
Query: 65 GFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGR 124
GFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGR
Sbjct: 279 GFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGR 338
Query: 125 LPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 184
LPSKPK Q+ P VSLI++L +R D
Sbjct: 339 LPSKPKQAQDISP---VSLISSL------------------------------VRAHIDS 365
Query: 185 IPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 244
+P + L D +S S + F +E + +Q FY LLT S+DVIR +A+
Sbjct: 366 VPSATKL---DYSKFQESVSYQ-FEKE---------DCVDVQLFYDLLTGSMDVIRKWAE 412
Query: 245 KIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDD 304
KI GF +L KEDQ+LL +SA LELF+LRLAYR++ E+ KLIFCNGVVL + QC R FG +
Sbjct: 413 KIQGFLELPKEDQDLLLESAFLELFILRLAYRSKPEEGKLIFCNGVVLHRVQCVRGFG-E 471
Query: 305 WLNAILEFCQSLHLMEIDISAFACLCALTLI 335
W+++I+EF QSLH M ID+ +F+CL AL +I
Sbjct: 472 WIDSIIEFSQSLHRMNIDVPSFSCLAALVII 502
>gi|432859925|ref|XP_004069304.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
[Oryzias latipes]
Length = 585
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/327 (51%), Positives = 208/327 (63%), Gaps = 54/327 (16%)
Query: 10 ESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKR 69
ESP++ + +S + + G + CAVCGD A+CQHYGVRTCEGCKGFFKR
Sbjct: 224 ESPRMVEAVMMSPKTPNSGTNEGH---------CAVCGDNASCQHYGVRTCEGCKGFFKR 274
Query: 70 TVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKP 129
TVQK +KYVCLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTD+LKGRRGRLPSKP
Sbjct: 275 TVQKNAKYVCLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDNLKGRRGRLPSKP 334
Query: 130 KSPQESPPS-PPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGF 188
KS E+ + P V++I +L ++ D P
Sbjct: 335 KSMIEASSTIPNVNIIASL------------------------------VKAHLDSNPSA 364
Query: 189 SDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 248
L +Q + L +E + IQQFY LLT ++DVIR ++ IPG
Sbjct: 365 GKLNYSR----YQEKTNHLKEKE---------DAGDIQQFYELLTGALDVIRKWSQAIPG 411
Query: 249 FSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNA 308
F+D C+EDQELL +SA +ELF+LRLAYR+ E KL+FCNGVVL +QQC SFG DW+++
Sbjct: 412 FTDFCEEDQELLLESAFVELFILRLAYRSNPEKDKLVFCNGVVLHRQQCAHSFG-DWIDS 470
Query: 309 ILEFCQSLHLMEIDISAFACLCALTLI 335
I+EF QSLH M +D+S FACL AL +I
Sbjct: 471 IMEFSQSLHRMNLDLSLFACLAALVII 497
>gi|224056501|ref|XP_002188897.1| PREDICTED: nuclear receptor subfamily 4 group A member 1, partial
[Taeniopygia guttata]
Length = 428
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 174/319 (54%), Positives = 209/319 (65%), Gaps = 48/319 (15%)
Query: 18 APLSSASSSPGCDTSRPTPPSPSQ-LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSK 76
AP S+ P ++ P + CA CGD A+CQHYGVRTCEGCKGFFKRTVQK +K
Sbjct: 71 APGSALLEGPALAPTKVRSPGAGEGRCAFCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK 130
Query: 77 YVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESP 136
Y+CLA+K CPVDKRRRNRCQFCRFQKCL V MVKEVVRTDSLKGRRGRLPSKPK P P
Sbjct: 131 YICLANKDCPVDKRRRNRCQFCRFQKCLAVCMVKEVVRTDSLKGRRGRLPSKPKQP---P 187
Query: 137 PSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 196
+ PVSLIT+L +R D IP + L D
Sbjct: 188 DASPVSLITSL------------------------------VRAHIDSIPSATKL---DY 214
Query: 197 ELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 256
+SA P P E + +QQFY LLT S+DVIR +A+KI GF++L KED
Sbjct: 215 SKFQESA--------PCPFEK--EDSVDVQQFYDLLTGSMDVIRKWAEKIQGFTELPKED 264
Query: 257 QELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSL 316
Q+LL +SA LELF+LRLAYR++ E+ KLIFCNGVVL +QQC R FG +W++AILEF QSL
Sbjct: 265 QDLLLESAFLELFILRLAYRSKPEEGKLIFCNGVVLHRQQCVRGFG-EWIDAILEFSQSL 323
Query: 317 HLMEIDISAFACLCALTLI 335
H M +D+ +F+CL AL +I
Sbjct: 324 HRMSVDVPSFSCLAALVII 342
>gi|395540615|ref|XP_003772248.1| PREDICTED: nuclear receptor subfamily 4 group A member 1
[Sarcophilus harrisii]
Length = 599
Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 173/325 (53%), Positives = 208/325 (64%), Gaps = 55/325 (16%)
Query: 11 SPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
SP L PLS A + G P CAVCGD A+CQHYGVRTCEGCKGFFKRT
Sbjct: 243 SPHL--DGPLSPAKARAG------VPGGTEGRCAVCGDNASCQHYGVRTCEGCKGFFKRT 294
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
VQK +KYVCLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK
Sbjct: 295 VQKNAKYVCLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPK 354
Query: 131 SPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 190
++P S PV+L+T+L +R D +P +
Sbjct: 355 ---QTPDSSPVNLLTSL------------------------------VRAHIDSVPSTAK 381
Query: 191 LCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 250
L FQ +L F +E +P +QQFY LL+ S+DVIR +A+KIPGF
Sbjct: 382 LDYSK----FQELALPQFGKE---------DPGDVQQFYDLLSGSMDVIRKWAEKIPGFL 428
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAIL 310
DL DQ+LL +SA LELF+LRLAYR++ + KLIFC G+VL + QC R FG DW+++IL
Sbjct: 429 DLPPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCTGLVLHRLQCLRGFG-DWIDSIL 487
Query: 311 EFCQSLHLMEIDISAFACLCALTLI 335
F +SLH M ID+ AF+CL AL +I
Sbjct: 488 AFSRSLHSMVIDVPAFSCLAALVII 512
>gi|432866776|ref|XP_004070930.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
[Oryzias latipes]
Length = 571
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 164/294 (55%), Positives = 197/294 (67%), Gaps = 45/294 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK SKYVCLA+K CPVDKRRRNRCQFCRFQK
Sbjct: 236 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNSKYVCLANKDCPVDKRRRNRCQFCRFQK 295
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPP-SPPVSLITALYREPNPLEPPIAEP 161
CL VGMV+EVVRTDSLKGRRGRLPSKPK +++ P PVS+I +L R P +
Sbjct: 296 CLAVGMVREVVRTDSLKGRRGRLPSKPKGVKDATPIVSPVSMIASLVRAHIDSNPAVG-- 353
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAE 221
++D ++ ++ S KED
Sbjct: 354 ------------NLDYSKYLEKEV---SANQKEDVS------------------------ 374
Query: 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
I+QFY LLT S++VIR +A IPGFSD C EDQELL +SA +ELF+LRLAYR+ +
Sbjct: 375 --DIKQFYDLLTASLEVIRKWAKDIPGFSDFCLEDQELLVESAFVELFILRLAYRSNPKM 432
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KLIFCNG VL K QC R FG +W+++ILEF QSLH M++D+S+F+CL AL LI
Sbjct: 433 EKLIFCNGAVLHKTQCVRGFG-EWIDSILEFSQSLHRMKLDVSSFSCLAALILI 485
>gi|321478278|gb|EFX89235.1| hypothetical protein DAPPUDRAFT_220366 [Daphnia pulex]
Length = 437
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 174/317 (54%), Positives = 196/317 (61%), Gaps = 84/317 (26%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
QLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAD++CPVDKRRRNRCQFCRF
Sbjct: 97 QLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADRSCPVDKRRRNRCQFCRF 156
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA- 159
QKCL VGMVKEVVRTDSLKGRRGRLPSKPK QE+ SPPVSLIT+L R P IA
Sbjct: 157 QKCLSVGMVKEVVRTDSLKGRRGRLPSKPKCSQEASNSPPVSLITSLVRAHLDTSPEIAN 216
Query: 160 ---------------------EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQEL 198
+ + + QF++LLT+ +DVI+ +A+KIPGFS+LCKEDQ+L
Sbjct: 217 YDYSMNGNESNHQASAHSTEVQADHVHQFFALLTSCIDVIKVWAEKIPGFSELCKEDQDL 276
Query: 199 LFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 258
L QSA LE+F VIR FA +I
Sbjct: 277 LIQSACLEIF-----------------------------VIR-FAYRI------------ 294
Query: 259 LLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHL 318
R ED K IF NGVVL QC+ SFG W AI+EF SLH
Sbjct: 295 -------------------RPEDEKFIFDNGVVLHSSQCKPSFG-PWHGAIIEFAHSLHS 334
Query: 319 MEIDISAFACLCALTLI 335
M+ID+SAFACL ALTLI
Sbjct: 335 MDIDLSAFACLVALTLI 351
>gi|148233330|ref|NP_001079134.1| nuclear receptor subfamily 4 group A member 1 [Xenopus laevis]
gi|47938683|gb|AAH72138.1| Nr4a1-A protein [Xenopus laevis]
Length = 577
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 165/301 (54%), Positives = 197/301 (65%), Gaps = 47/301 (15%)
Query: 35 TPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNR 94
+P S CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNR
Sbjct: 238 SPSSNEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNR 297
Query: 95 CQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPL 154
CQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK ES P VSLI +L
Sbjct: 298 CQFCRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKQIAESSP---VSLINSL------- 347
Query: 155 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNP 214
+R D IP S L ++E P
Sbjct: 348 -----------------------VRAHIDSIPSSSKLDYSK-------------FQETVP 371
Query: 215 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
L+ +QQFY LL+ S++VIR +A+KI GF DL KEDQ+LL +SA LELF+LRLA
Sbjct: 372 LQLEKESSVDVQQFYDLLSGSLEVIRKWAEKIQGFVDLPKEDQDLLLESAFLELFILRLA 431
Query: 275 YRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
YR+R E+ KLIFCNGVVL + QC R FG +W+++I+EF SL M ID+ +F+CL AL +
Sbjct: 432 YRSRPEEGKLIFCNGVVLHRTQCVRGFG-EWIDSIIEFSHSLQRMNIDVPSFSCLSALVI 490
Query: 335 I 335
+
Sbjct: 491 V 491
>gi|432112627|gb|ELK35343.1| Nuclear receptor subfamily 4 group A member 1 [Myotis davidii]
Length = 598
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/319 (52%), Positives = 208/319 (65%), Gaps = 53/319 (16%)
Query: 17 SAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSK 76
SAP++SA S G P CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +K
Sbjct: 247 SAPVTSAKSRSG------APAGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK 300
Query: 77 YVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESP 136
Y+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKP+ P P
Sbjct: 301 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPRQP---P 357
Query: 137 PSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 196
+ P +L+T+L R P A+ + +F L V+ HF KED
Sbjct: 358 DASPANLLTSLVRAHLDSGPSTAKLD-YSKFQEL------VLPHFG----------KEDA 400
Query: 197 ELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 256
+QQFY LL+ S++VIR +A+KIPGF++LC D
Sbjct: 401 R--------------------------DVQQFYDLLSGSLEVIRKWAEKIPGFAELCTGD 434
Query: 257 QELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSL 316
Q+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL F +SL
Sbjct: 435 QDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDSILAFSRSL 493
Query: 317 HLMEIDISAFACLCALTLI 335
H + +D+ AFACL AL LI
Sbjct: 494 HSLAVDVPAFACLSALVLI 512
>gi|291231311|ref|XP_002735608.1| PREDICTED: nuclear receptor subfamily 4, group A, member 2-like
[Saccoglossus kowalevskii]
Length = 827
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 171/306 (55%), Positives = 201/306 (65%), Gaps = 44/306 (14%)
Query: 31 TSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKR 90
TS+ P CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKR
Sbjct: 479 TSQRNSPGQEGTCAVCGDSAACQHYGVRTCEGCKGFFKRTVQKHAKYVCLANKNCPVDKR 538
Query: 91 RRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVS-LITALYR 149
RRNRCQFCRFQKCL GMVKEVVRTD LKGRRGRLPSKP+SPQES P P LITAL
Sbjct: 539 RRNRCQFCRFQKCLASGMVKEVVRTDELKGRRGRLPSKPRSPQESSPPSPPVSLITAL-- 596
Query: 150 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY 209
+R D PG +L E+ S+
Sbjct: 597 ----------------------------VRAHVDASPGKPNLNYTQFEMPDTSS------ 622
Query: 210 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 269
E + + E++QQFY L S+DVI+ + KIPG+S++C+EDQELLFQSA LELF
Sbjct: 623 ------ESKLDDKEQLQQFYDNLVQSIDVIKSWTQKIPGWSEICEEDQELLFQSACLELF 676
Query: 270 VLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACL 329
VLRLAYR D +L FCNGVVL KQQC R FG +WL+ ++ F +++H M++DISAFACL
Sbjct: 677 VLRLAYRCSPSDDRLAFCNGVVLHKQQCARGFG-EWLDQVVNFAETMHGMDVDISAFACL 735
Query: 330 CALTLI 335
AL L+
Sbjct: 736 SALVLV 741
>gi|548354|sp|Q04913.1|NR4A1_XENLA RecName: Full=Nuclear receptor subfamily 4 group A member 1;
AltName: Full=Nerve growth factor-induced protein I-B
homolog
gi|64917|emb|CAA50031.1| NGFI-B [Xenopus laevis]
Length = 577
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 164/301 (54%), Positives = 196/301 (65%), Gaps = 47/301 (15%)
Query: 35 TPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNR 94
+P S CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNR
Sbjct: 238 SPSSNEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNR 297
Query: 95 CQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPL 154
CQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK ES P V LI +L
Sbjct: 298 CQFCRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKQIAESSP---VDLINSL------- 347
Query: 155 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNP 214
+R D IP S L ++E P
Sbjct: 348 -----------------------VRAHIDSIPSSSKLDYSK-------------FQETVP 371
Query: 215 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
L+ +QQFY LL+ S++VIR +A+KI GF DL KEDQ+LL +SA LELF+LRLA
Sbjct: 372 LQLEKESSVDVQQFYDLLSGSLEVIRKWAEKIQGFVDLPKEDQDLLLESAFLELFILRLA 431
Query: 275 YRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
YR+R E+ KLIFCNGVVL + QC R FG +W+++I+EF SL M ID+ +F+CL AL +
Sbjct: 432 YRSRPEEGKLIFCNGVVLHRTQCVRGFG-EWIDSIIEFSHSLQRMNIDVPSFSCLSALVI 490
Query: 335 I 335
+
Sbjct: 491 V 491
>gi|348508024|ref|XP_003441555.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
isoform 2 [Oreochromis niloticus]
Length = 598
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 173/333 (51%), Positives = 205/333 (61%), Gaps = 60/333 (18%)
Query: 10 ESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKR 69
ESPK A +S + +PG SR CAVCGD A+CQHYGVRTCEGCKGFFKR
Sbjct: 231 ESPKTAEGAMMSPKTPNPGSSESR---------CAVCGDNASCQHYGVRTCEGCKGFFKR 281
Query: 70 TVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKP 129
TVQK +KYVCLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKP
Sbjct: 282 TVQKNAKYVCLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKP 341
Query: 130 KSPQE-SPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGF 188
K P E S +P V++I +L R P I + + YS + D +
Sbjct: 342 KIPVEASSTTPSVNIIASLVRAHLDSSPTIGKLD-----YSKYRETADSSKE-------- 388
Query: 189 SDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 248
KED IQQFY LLT S+DVIR +A IPG
Sbjct: 389 ----KEDAG--------------------------DIQQFYDLLTGSLDVIRKWAQSIPG 418
Query: 249 FSDLCKEDQELLFQSASLELFVLRLAYR------TRAEDTKLIFCNGVVLEKQQCQRSFG 302
F D C EDQELL +SA +ELF+LRLAY + E +LIFCNGVVL + QC RSFG
Sbjct: 419 FMDFCTEDQELLLESAFVELFILRLAYGSVFFLLSDPEKNELIFCNGVVLHRLQCARSFG 478
Query: 303 DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
DW+++I++F SL + +D+S F+CL AL +I
Sbjct: 479 -DWIDSIVDFSHSLRRLNLDVSLFSCLAALVII 510
>gi|440896105|gb|ELR48130.1| Nuclear receptor subfamily 4 group A member 1, partial [Bos
grunniens mutus]
Length = 605
Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 170/324 (52%), Positives = 208/324 (64%), Gaps = 59/324 (18%)
Query: 15 RHSAPLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
R AP++SA S +PG R CAVCGD A+CQHYGVRTCEGCKGFFKRTV
Sbjct: 252 RLDAPVTSAKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGCKGFFKRTV 302
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
QK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK
Sbjct: 303 QKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQ 362
Query: 132 PQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDL 191
P E+ P+ L+T+L +R D P S L
Sbjct: 363 PPETSPA---HLLTSL------------------------------VRAHLDSGPSTSKL 389
Query: 192 CKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 251
FQ +L F +E + +QQFY LL+ S++VIR +A+KIPGF++
Sbjct: 390 DYSK----FQELALPHFGKE---------DAGDVQQFYDLLSGSLEVIRKWAEKIPGFAE 436
Query: 252 LCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILE 311
L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL
Sbjct: 437 LSPGDQDLLLESAFLELFILRLAYRSKPAEGKLIFCSGLVLHRLQCARGFG-DWIDSILA 495
Query: 312 FCQSLHLMEIDISAFACLCALTLI 335
F +SLH + +DI AFACL AL LI
Sbjct: 496 FSRSLHSLVVDIPAFACLSALVLI 519
>gi|47060285|gb|AAT09761.1| neural orphan nuclear receptor Nurr1 [Danio rerio]
Length = 584
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/300 (55%), Positives = 200/300 (66%), Gaps = 47/300 (15%)
Query: 37 PSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQ 96
PS LCAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ
Sbjct: 252 PSSEGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQ 311
Query: 97 FCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPS-PPVSLITALYREPNPLE 155
+CRFQKCL VGMV VVRT SLKGRRGRLPSKPKSPQ+ P S PV+L+ AL R
Sbjct: 312 YCRFQKCLVVGMV--VVRTASLKGRRGRLPSKPKSPQDIPVSFTPVNLLNALVRAHIDSN 369
Query: 156 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
P +A + YS TS + + S E +
Sbjct: 370 PSMARLD-----YSKFQTSPE-----------------------YHSGGDESLH------ 395
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
IQQFY LLT S+ +IR +A+KIPGF++L K DQELLF+SA LELFVLRLAY
Sbjct: 396 ---------IQQFYDLLTASMSIIRGWAEKIPGFTELPKCDQELLFESAFLELFVLRLAY 446
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R+ + KLIFCNG+VL K QC R FG +W+++I+EF +L M +D+SAF+C+ ALT++
Sbjct: 447 RSNLPEDKLIFCNGMVLHKLQCVRGFG-EWIDSIVEFSSNLQSMSLDVSAFSCIAALTIV 505
>gi|115497502|ref|NP_001069379.1| nuclear receptor subfamily 4 group A member 1 [Bos taurus]
gi|122142352|sp|Q0V8F0.1|NR4A1_BOVIN RecName: Full=Nuclear receptor subfamily 4 group A member 1
gi|110332005|gb|ABG67108.1| nuclear receptor subfamily 4, group A, member 1 [Bos taurus]
gi|296487863|tpg|DAA29976.1| TPA: nuclear receptor subfamily 4 group A member 1 [Bos taurus]
Length = 598
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 170/324 (52%), Positives = 208/324 (64%), Gaps = 59/324 (18%)
Query: 15 RHSAPLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
R AP++SA S +PG R CAVCGD A+CQHYGVRTCEGCKGFFKRTV
Sbjct: 245 RLDAPVTSAKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGCKGFFKRTV 295
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
QK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK
Sbjct: 296 QKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQ 355
Query: 132 PQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDL 191
P E+ P+ L+T+L +R D P S L
Sbjct: 356 PPETSPA---HLLTSL------------------------------VRAHLDSGPSTSKL 382
Query: 192 CKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 251
FQ +L F +E + +QQFY LL+ S++VIR +A+KIPGF++
Sbjct: 383 DYSK----FQELALPHFGKE---------DAGDVQQFYDLLSGSLEVIRKWAEKIPGFAE 429
Query: 252 LCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILE 311
L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL
Sbjct: 430 LSPGDQDLLLESAFLELFILRLAYRSKPAEGKLIFCSGLVLHRLQCARGFG-DWIDSILA 488
Query: 312 FCQSLHLMEIDISAFACLCALTLI 335
F +SLH + +DI AFACL AL LI
Sbjct: 489 FSRSLHSLVVDIPAFACLSALVLI 512
>gi|395834946|ref|XP_003790446.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 1
[Otolemur garnettii]
gi|395834950|ref|XP_003790448.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 3
[Otolemur garnettii]
Length = 598
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 167/321 (52%), Positives = 206/321 (64%), Gaps = 59/321 (18%)
Query: 18 APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG 74
AP++SA S +PG R CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK
Sbjct: 248 APMTSAKARSGAPGGSEGR---------CAVCGDSASCQHYGVRTCEGCKGFFKRTVQKN 298
Query: 75 SKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQE 134
+KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK P
Sbjct: 299 AKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQP-- 356
Query: 135 SPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE 194
P + P +L+T+L +R D P + L
Sbjct: 357 -PDASPANLLTSL------------------------------VRAHLDSGPSTAKLDYS 385
Query: 195 DQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 254
FQ L F +E + +QQFY LL+ S++VIR +A+KIPGF++L
Sbjct: 386 K----FQELVLPRFGKE---------DAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSP 432
Query: 255 EDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQ 314
DQELL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL F +
Sbjct: 433 SDQELLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDSILAFSR 491
Query: 315 SLHLMEIDISAFACLCALTLI 335
SLH + +D+ AF+CL AL LI
Sbjct: 492 SLHSLAVDVPAFSCLSALVLI 512
>gi|395834948|ref|XP_003790447.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 2
[Otolemur garnettii]
Length = 610
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 167/321 (52%), Positives = 206/321 (64%), Gaps = 59/321 (18%)
Query: 18 APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG 74
AP++SA S +PG R CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK
Sbjct: 260 APMTSAKARSGAPGGSEGR---------CAVCGDSASCQHYGVRTCEGCKGFFKRTVQKN 310
Query: 75 SKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQE 134
+KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK P
Sbjct: 311 AKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQP-- 368
Query: 135 SPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE 194
P + P +L+T+L +R D P + L
Sbjct: 369 -PDASPANLLTSL------------------------------VRAHLDSGPSTAKLDYS 397
Query: 195 DQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 254
FQ L F +E + +QQFY LL+ S++VIR +A+KIPGF++L
Sbjct: 398 K----FQELVLPRFGKE---------DAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSP 444
Query: 255 EDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQ 314
DQELL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL F +
Sbjct: 445 SDQELLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDSILAFSR 503
Query: 315 SLHLMEIDISAFACLCALTLI 335
SLH + +D+ AF+CL AL LI
Sbjct: 504 SLHSLAVDVPAFSCLSALVLI 524
>gi|301772378|ref|XP_002921623.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 4 group
A member 1-like [Ailuropoda melanoleuca]
Length = 579
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 168/321 (52%), Positives = 206/321 (64%), Gaps = 59/321 (18%)
Query: 18 APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG 74
AP+SSA S +PG R CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK
Sbjct: 242 APVSSAKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKN 292
Query: 75 SKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQE 134
+KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK P
Sbjct: 293 AKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQP-- 350
Query: 135 SPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE 194
P + P +L+T+L +R D P + L
Sbjct: 351 -PDASPANLLTSL------------------------------VRAHLDSGPSTAKLDYS 379
Query: 195 DQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 254
FQ L F +E + +QQFY LL+ S++VIR +A+KIPGF++L
Sbjct: 380 K----FQELVLPHFGKE---------DAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSP 426
Query: 255 EDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQ 314
DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL F +
Sbjct: 427 GDQDLLLESAFLELFILRLAYRSKPAEGKLIFCSGLVLHRLQCARGFG-DWIDSILAFSR 485
Query: 315 SLHLMEIDISAFACLCALTLI 335
SLH + +D+ AFACL AL LI
Sbjct: 486 SLHGLVVDVPAFACLSALVLI 506
>gi|444521917|gb|ELV13238.1| Nuclear receptor subfamily 4 group A member 1 [Tupaia chinensis]
Length = 598
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 170/320 (53%), Positives = 208/320 (65%), Gaps = 59/320 (18%)
Query: 19 PLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGS 75
P SSA S +PG R CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +
Sbjct: 249 PASSAKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNA 299
Query: 76 KYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQES 135
KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK P
Sbjct: 300 KYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQP--- 356
Query: 136 PPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 195
P + PV+L+T+L R P +A+ + +F L V+ HF KED
Sbjct: 357 PDASPVNLLTSLVRAHLDSGPSMAKLD-YSKFQEL------VLPHFG----------KED 399
Query: 196 QELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE 255
+QQFY LL+ S++VIR +A+KIPGF++L
Sbjct: 400 AG--------------------------DVQQFYDLLSGSLEVIRKWAEKIPGFAELSPG 433
Query: 256 DQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQS 315
DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL F +S
Sbjct: 434 DQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDSILAFSRS 492
Query: 316 LHLMEIDISAFACLCALTLI 335
LH + +D+ AFACL AL LI
Sbjct: 493 LHSLAVDVPAFACLSALVLI 512
>gi|147903779|ref|NP_001080159.1| nuclear receptor subfamily 4, group A, member 1 [Xenopus laevis]
gi|33416666|gb|AAH56025.1| Nr4a1 protein [Xenopus laevis]
Length = 577
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 162/301 (53%), Positives = 196/301 (65%), Gaps = 47/301 (15%)
Query: 35 TPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNR 94
+P S CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNR
Sbjct: 238 SPSSNEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNR 297
Query: 95 CQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPL 154
CQFCRFQKCL VGMVKEVVRTD+LKGRRGRLPSKPK ES P VSLI +L
Sbjct: 298 CQFCRFQKCLAVGMVKEVVRTDNLKGRRGRLPSKPKQIAESSP---VSLINSL------- 347
Query: 155 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNP 214
+R D IP S L ++E P
Sbjct: 348 -----------------------VRAHIDSIPSSSKLDYSK-------------FQETVP 371
Query: 215 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
++ +QQFY LL+ S++VIR +A+KI GF DL KEDQ+LL +SA LELF+LRLA
Sbjct: 372 VQLEKESSVDVQQFYDLLSGSLEVIRKWAEKIQGFVDLPKEDQDLLLESAFLELFILRLA 431
Query: 275 YRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
YR+R E+ KLIFCNGVVL + QC R FG +W+++I+EF +L ID+ +F+CL AL +
Sbjct: 432 YRSRPEEEKLIFCNGVVLHRTQCVRGFG-EWIDSIIEFSHNLQRTNIDVPSFSCLSALVI 490
Query: 335 I 335
I
Sbjct: 491 I 491
>gi|332839341|ref|XP_003313739.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 3
[Pan troglodytes]
Length = 652
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 171/332 (51%), Positives = 210/332 (63%), Gaps = 63/332 (18%)
Query: 11 SPKLRHS----APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
SP L S AP++S S +PG R CAVCGD A+CQHYGVRTCEGC
Sbjct: 291 SPHLEGSGILDAPVTSTKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGC 341
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
KGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRG
Sbjct: 342 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 401
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
RLPSKPK P P + P +L+T+L +R D
Sbjct: 402 RLPSKPKQP---PDASPANLLTSL------------------------------VRAHLD 428
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
P + L FQ L F +E + E +QQFY LL+ S++VIR +A
Sbjct: 429 SGPSTAKLDYSK----FQELVLPRFGKE---------DAEDVQQFYDLLSGSLEVIRKWA 475
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG
Sbjct: 476 EKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG- 534
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 535 DWIDSILAFSRSLHSLLVDVPAFACLSALVLI 566
>gi|332839337|ref|XP_003313737.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 1
[Pan troglodytes]
gi|332839339|ref|XP_003313738.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 2
[Pan troglodytes]
gi|410046663|ref|XP_003952237.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 [Pan
troglodytes]
gi|410256444|gb|JAA16189.1| nuclear receptor subfamily 4, group A, member 1 [Pan troglodytes]
gi|410340575|gb|JAA39234.1| nuclear receptor subfamily 4, group A, member 1 [Pan troglodytes]
Length = 598
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 171/332 (51%), Positives = 210/332 (63%), Gaps = 63/332 (18%)
Query: 11 SPKLRHS----APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
SP L S AP++S S +PG R CAVCGD A+CQHYGVRTCEGC
Sbjct: 237 SPHLEGSGILDAPVTSTKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGC 287
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
KGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRG
Sbjct: 288 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 347
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
RLPSKPK P P + P +L+T+L +R D
Sbjct: 348 RLPSKPKQP---PDASPANLLTSL------------------------------VRAHLD 374
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
P + L FQ L F +E + E +QQFY LL+ S++VIR +A
Sbjct: 375 SGPSTAKLDYSK----FQELVLPRFGKE---------DAEDVQQFYDLLSGSLEVIRKWA 421
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG
Sbjct: 422 EKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG- 480
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 481 DWIDSILAFSRSLHSLLVDVPAFACLSALVLI 512
>gi|348580647|ref|XP_003476090.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
[Cavia porcellus]
Length = 677
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 172/329 (52%), Positives = 210/329 (63%), Gaps = 57/329 (17%)
Query: 11 SPKLRHS----APLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGF 66
SP L S AP++SA S G T CAVCGD A+CQHYGVRTCEGCKGF
Sbjct: 316 SPHLDSSGMLDAPVTSAKSRSG------TSGGSEGRCAVCGDNASCQHYGVRTCEGCKGF 369
Query: 67 FKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLP 126
FKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLP
Sbjct: 370 FKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLP 429
Query: 127 SKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP 186
SKPK P P + P +L+T+L R P TT +D +
Sbjct: 430 SKPKQP---PDASPANLLTSLVRAHLDSGPS--------------TTKLDYSK------- 465
Query: 187 GFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 246
FQ L F +E + +QQFY LL++S++VIR +A+KI
Sbjct: 466 -------------FQELVLPCFGKE---------DAGDVQQFYDLLSSSLEVIRKWAEKI 503
Query: 247 PGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWL 306
PGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+
Sbjct: 504 PGFAELFPGDQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWI 562
Query: 307 NAILEFCQSLHLMEIDISAFACLCALTLI 335
++IL F +SLH + ID+ AFACL AL LI
Sbjct: 563 DSILAFSRSLHSLAIDVPAFACLSALVLI 591
>gi|332839343|ref|XP_509073.3| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 4
[Pan troglodytes]
gi|410215234|gb|JAA04836.1| nuclear receptor subfamily 4, group A, member 1 [Pan troglodytes]
gi|410256442|gb|JAA16188.1| nuclear receptor subfamily 4, group A, member 1 [Pan troglodytes]
gi|410292876|gb|JAA25038.1| nuclear receptor subfamily 4, group A, member 1 [Pan troglodytes]
gi|410340573|gb|JAA39233.1| nuclear receptor subfamily 4, group A, member 1 [Pan troglodytes]
Length = 611
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 171/332 (51%), Positives = 210/332 (63%), Gaps = 63/332 (18%)
Query: 11 SPKLRHS----APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
SP L S AP++S S +PG R CAVCGD A+CQHYGVRTCEGC
Sbjct: 250 SPHLEGSGILDAPVTSTKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGC 300
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
KGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRG
Sbjct: 301 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 360
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
RLPSKPK P P + P +L+T+L +R D
Sbjct: 361 RLPSKPKQP---PDASPANLLTSL------------------------------VRAHLD 387
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
P + L FQ L F +E + E +QQFY LL+ S++VIR +A
Sbjct: 388 SGPSTAKLDYSK----FQELVLPRFGKE---------DAEDVQQFYDLLSGSLEVIRKWA 434
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG
Sbjct: 435 EKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG- 493
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 494 DWIDSILAFSRSLHSLLVDVPAFACLSALVLI 525
>gi|6754216|ref|NP_034574.1| nuclear receptor subfamily 4 group A member 1 [Mus musculus]
gi|128911|sp|P12813.1|NR4A1_MOUSE RecName: Full=Nuclear receptor subfamily 4 group A member 1;
AltName: Full=Nuclear hormone receptor NUR/77; AltName:
Full=Nuclear protein N10; AltName: Full=Orphan nuclear
receptor HMR
gi|53313|emb|CAA34862.1| N10 nuclear protein [Mus musculus]
gi|200116|gb|AAA39843.1| thyroid hormone receptor [Mus musculus]
gi|12836082|dbj|BAB23493.1| unnamed protein product [Mus musculus]
gi|13435840|gb|AAH04770.1| Nuclear receptor subfamily 4, group A, member 1 [Mus musculus]
gi|71059903|emb|CAJ18495.1| Nr4a1 [Mus musculus]
gi|74178647|dbj|BAE33997.1| unnamed protein product [Mus musculus]
gi|148672107|gb|EDL04054.1| nuclear receptor subfamily 4, group A, member 1 [Mus musculus]
Length = 601
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 162/293 (55%), Positives = 194/293 (66%), Gaps = 47/293 (16%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQK
Sbjct: 270 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 329
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPK P P + P +L+T+L
Sbjct: 330 CLAVGMVKEVVRTDSLKGRRGRLPSKPKQP---PDASPTNLLTSL--------------- 371
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
IR D P + L FQ L F +E +
Sbjct: 372 ---------------IRAHLDSGPSTAKLDYSK----FQELVLPRFGKE---------DA 403
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+QQFY LL+ S+DVIR +A+KIPGF +LC DQ+LL +SA LELF+LRLAYR++ +
Sbjct: 404 GDVQQFYDLLSGSLDVIRKWAEKIPGFIELCPGDQDLLLESAFLELFILRLAYRSKPGEG 463
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KLIFC+G+VL + QC R FG DW++ IL F +SLH + +D+ AFACL AL LI
Sbjct: 464 KLIFCSGLVLHQLQCARGFG-DWIDNILAFSRSLHSLGVDVPAFACLSALVLI 515
>gi|118403728|ref|NP_001072303.1| nuclear receptor subfamily 4, group A, member 1 [Xenopus (Silurana)
tropicalis]
gi|111305603|gb|AAI21357.1| nuclear receptor subfamily 4, group A, member 1 [Xenopus (Silurana)
tropicalis]
Length = 577
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 162/301 (53%), Positives = 196/301 (65%), Gaps = 47/301 (15%)
Query: 35 TPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNR 94
+P S CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNR
Sbjct: 238 SPSSNEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNR 297
Query: 95 CQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPL 154
CQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK ES P VSLI +L
Sbjct: 298 CQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQIAESSP---VSLINSL------- 347
Query: 155 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNP 214
+R D IP S L ++E P
Sbjct: 348 -----------------------VRAHIDSIPSSSKLDYSK-------------FQENVP 371
Query: 215 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
++ +QQFY LL+ S++VIR +A+KI GF +L KEDQ+LL +SA LELF+LRLA
Sbjct: 372 VQLEKESSADVQQFYDLLSGSLEVIRKWAEKIQGFVELPKEDQDLLLESAFLELFILRLA 431
Query: 275 YRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
YR+R E+ KLIFCNGVVL + QC R FG +W+++I+EF +L ID+ +F+CL AL +
Sbjct: 432 YRSRPEEGKLIFCNGVVLHRTQCVRGFG-EWIDSIIEFSHNLQRTNIDVPSFSCLSALVI 490
Query: 335 I 335
I
Sbjct: 491 I 491
>gi|291389177|ref|XP_002711239.1| PREDICTED: nuclear receptor subfamily 4, group A, member 1
[Oryctolagus cuniculus]
Length = 590
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 167/321 (52%), Positives = 206/321 (64%), Gaps = 59/321 (18%)
Query: 18 APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG 74
AP +SA S +PG R CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK
Sbjct: 248 APATSAKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKN 298
Query: 75 SKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQE 134
+KY+CLA K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK P
Sbjct: 299 AKYICLATKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQP-- 356
Query: 135 SPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE 194
P + P +L+TAL +R D P + L
Sbjct: 357 -PDASPANLLTAL------------------------------VRAHLDSGPSTAKLDYS 385
Query: 195 DQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 254
FQ +L F +E + +QQFY LL+ S++V+R +A+KIPGF++L
Sbjct: 386 K----FQDLALPCFGKE---------DARDVQQFYELLSVSLEVVRKWAEKIPGFAELVP 432
Query: 255 EDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQ 314
DQ+LL +SA LELFV RLAYR++ ++ KLIFC+G+VL + QC R FG DW+++IL+F +
Sbjct: 433 SDQDLLLESAFLELFVFRLAYRSKPDEGKLIFCSGLVLHRLQCARGFG-DWIDSILDFSR 491
Query: 315 SLHLMEIDISAFACLCALTLI 335
SLH + +D+ AFACL AL LI
Sbjct: 492 SLHSLVVDVPAFACLSALVLI 512
>gi|53315|emb|CAA42718.1| N10 nuclear protein [Mus musculus]
Length = 601
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 162/293 (55%), Positives = 194/293 (66%), Gaps = 47/293 (16%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQK
Sbjct: 270 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 329
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPK P P + P +L+T+L
Sbjct: 330 CLAVGMVKEVVRTDSLKGRRGRLPSKPKQP---PDASPTNLLTSL--------------- 371
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
IR D P + L FQ L F +E +
Sbjct: 372 ---------------IRAHLDSGPSTAKLDYSK----FQELVLPRFGKE---------DA 403
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+QQFY LL+ S+DVIR +A+KIPGF +LC DQ+LL +SA LELF+LRLAYR++ +
Sbjct: 404 GDVQQFYDLLSGSLDVIRKWAEKIPGFIELCPGDQDLLLESAFLELFILRLAYRSKPGEG 463
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KLIFC+G+VL + QC R FG DW++ IL F +SLH + +D+ AFACL AL LI
Sbjct: 464 KLIFCSGLVLHQLQCARGFG-DWIDNILAFSRSLHSLGVDVPAFACLSALVLI 515
>gi|403296687|ref|XP_003939229.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 3
[Saimiri boliviensis boliviensis]
Length = 639
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 173/332 (52%), Positives = 212/332 (63%), Gaps = 63/332 (18%)
Query: 11 SPKLRHS----APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
SP L S AP++SA S +PG R CAVCGD A+CQHYGVRTCEGC
Sbjct: 278 SPHLEGSGILDAPMTSAKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGC 328
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
KGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRG
Sbjct: 329 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 388
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
RLPSKPK P P + P +L+T+L R P A+ + +F L V+ HF
Sbjct: 389 RLPSKPKQP---PDASPANLLTSLVRAHLDSGPSTAKLD-YSKFQEL------VLPHFG- 437
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
KED +QQFY LL+ S++VIR +A
Sbjct: 438 ---------KEDAG--------------------------DVQQFYDLLSGSLEVIRKWA 462
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG
Sbjct: 463 EKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG- 521
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 522 DWIDSILAFSRSLHSLVVDVPAFACLSALVLI 553
>gi|348502792|ref|XP_003438951.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
[Oreochromis niloticus]
Length = 575
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 160/294 (54%), Positives = 195/294 (66%), Gaps = 45/294 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD A+C HYGVRTCEGCKGFFKRTVQK SKYVCL++K CPVDKRRRNRCQFCRFQK
Sbjct: 240 CAVCGDNASCHHYGVRTCEGCKGFFKRTVQKNSKYVCLSNKECPVDKRRRNRCQFCRFQK 299
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKS-PQESPPSPPVSLITALYREPNPLEPPIAEP 161
CL VGMV+EVVRTDSLKGRRGRLPSKPK P + PVS+I +L R P +
Sbjct: 300 CLAVGMVREVVRTDSLKGRRGRLPSKPKIIPDVTAAVSPVSMIASLVRAHIDSNPSVGTL 359
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAE 221
+ + Y + TS PN E +
Sbjct: 360 DYSK--YIEMDTS-------------------------------------PNQKE----D 376
Query: 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
I+QFY LLT S++VIR +A+ IPGFS+ C EDQELL +SA +EL++LRLA+R+ +
Sbjct: 377 ASDIRQFYDLLTASMEVIRKWANSIPGFSEFCLEDQELLLESAFVELYILRLAFRSDPKT 436
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KLIFCNGVVL K QC R FG DW+++ILEF Q+LH M++D+S+F+CL AL +I
Sbjct: 437 EKLIFCNGVVLHKTQCVRGFG-DWIDSILEFSQNLHRMKLDVSSFSCLTALVII 489
>gi|194212001|ref|XP_001504414.2| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
isoform 1 [Equus caballus]
Length = 593
Score = 303 bits (776), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 169/321 (52%), Positives = 207/321 (64%), Gaps = 59/321 (18%)
Query: 18 APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG 74
AP++SA S +PG R CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK
Sbjct: 243 APVTSAKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKN 293
Query: 75 SKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQE 134
+KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK P
Sbjct: 294 AKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQP-- 351
Query: 135 SPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE 194
P + P +L+T+L R P A+ + +F L V+ HF KE
Sbjct: 352 -PDASPANLLTSLVRAHLDSGPSTAKLD-YSKFQEL------VLPHFG----------KE 393
Query: 195 DQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 254
D +QQFY LL+ S++VIR +A+KIPGF++L
Sbjct: 394 DAG--------------------------DVQQFYDLLSASLEVIRKWAEKIPGFAELSP 427
Query: 255 EDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQ 314
DQ+LL SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL F +
Sbjct: 428 GDQDLLLDSAFLELFILRLAYRSKPAEGKLIFCSGLVLHRLQCARGFG-DWIDSILAFSR 486
Query: 315 SLHLMEIDISAFACLCALTLI 335
SLH + +D+ AFACL AL LI
Sbjct: 487 SLHSLVVDVPAFACLSALVLI 507
>gi|403296683|ref|XP_003939227.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 1
[Saimiri boliviensis boliviensis]
gi|403296685|ref|XP_003939228.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 2
[Saimiri boliviensis boliviensis]
Length = 598
Score = 303 bits (775), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 173/332 (52%), Positives = 212/332 (63%), Gaps = 63/332 (18%)
Query: 11 SPKLRHS----APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
SP L S AP++SA S +PG R CAVCGD A+CQHYGVRTCEGC
Sbjct: 237 SPHLEGSGILDAPMTSAKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGC 287
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
KGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRG
Sbjct: 288 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 347
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
RLPSKPK P P + P +L+T+L R P A+ + +F L V+ HF
Sbjct: 348 RLPSKPKQP---PDASPANLLTSLVRAHLDSGPSTAKLD-YSKFQEL------VLPHFG- 396
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
KED +QQFY LL+ S++VIR +A
Sbjct: 397 ---------KEDAG--------------------------DVQQFYDLLSGSLEVIRKWA 421
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG
Sbjct: 422 EKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG- 480
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 481 DWIDSILAFSRSLHSLVVDVPAFACLSALVLI 512
>gi|292834|gb|AAA36763.1| TR3 orphan receptor [Homo sapiens]
gi|227762|prf||1710271A steroid receptor TR3
Length = 598
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 170/326 (52%), Positives = 210/326 (64%), Gaps = 51/326 (15%)
Query: 11 SPKLRHSAPLSSASSSPGCDTSRPTPPSPSQ-LCAVCGDIAACQHYGVRTCEGCKGFFKR 69
SP L S L + +S +R P PS+ CAVCGD A+CQHYGVRTCEGCKGFFKR
Sbjct: 237 SPHLEGSGILDTPVTS---TKARSGAPGPSEGRCAVCGDNASCQHYGVRTCEGCKGFFKR 293
Query: 70 TVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKP 129
TVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKP
Sbjct: 294 TVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKP 353
Query: 130 KSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 189
K P P + P +L+T+L V+ H D P +
Sbjct: 354 KQP---PDASPANLLTSL-----------------------------VLAHL-DSGPSTA 380
Query: 190 DLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGF 249
L FQ L F +E + +QQFY LL+ S++VIR +A+KIPGF
Sbjct: 381 KLDYSK----FQELVLPHFGKE---------DAGDVQQFYDLLSGSLEVIRKWAEKIPGF 427
Query: 250 SDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAI 309
++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++I
Sbjct: 428 AELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDSI 486
Query: 310 LEFCQSLHLMEIDISAFACLCALTLI 335
L F +SLH + +D+ AFACL AL LI
Sbjct: 487 LAFSRSLHSLLVDVPAFACLSALVLI 512
>gi|402886040|ref|XP_003906449.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 3
[Papio anubis]
Length = 670
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 170/332 (51%), Positives = 209/332 (62%), Gaps = 63/332 (18%)
Query: 11 SPKLRHS----APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
SP L S AP++S S +PG R CAVCGD A+CQHYGVRTCEGC
Sbjct: 309 SPHLEGSGILDAPVTSTKARSGAPGGTEGR---------CAVCGDNASCQHYGVRTCEGC 359
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
KGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRG
Sbjct: 360 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 419
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
RLPSKPK P P + P +L+T+L +R D
Sbjct: 420 RLPSKPKQP---PDASPANLLTSL------------------------------VRAHLD 446
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
P + L FQ L F +E + +QQFY LL+ S++VIR +A
Sbjct: 447 SGPSTAKLDYSK----FQELVLPRFGKE---------DAGDVQQFYDLLSGSLEVIRKWA 493
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG
Sbjct: 494 EKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG- 552
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 553 DWIDSILAFSRSLHSLVVDVPAFACLSALVLI 584
>gi|431921666|gb|ELK19018.1| Nuclear receptor subfamily 4 group A member 1 [Pteropus alecto]
Length = 598
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 166/320 (51%), Positives = 205/320 (64%), Gaps = 59/320 (18%)
Query: 19 PLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGS 75
P++SA S +PG R CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +
Sbjct: 249 PVTSAKSRSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNA 299
Query: 76 KYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQES 135
KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK P
Sbjct: 300 KYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQP--- 356
Query: 136 PPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 195
P + P +L+T+L +R D P + L
Sbjct: 357 PDASPANLLTSL------------------------------VRAHLDSGPSTAKLDYSK 386
Query: 196 QELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE 255
FQ L F +E + +QQFY LL+ S++VIR +A+KIPGF++L
Sbjct: 387 ----FQELVLPHFGKE---------DAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPG 433
Query: 256 DQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQS 315
DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL F +S
Sbjct: 434 DQDLLLESAFLELFILRLAYRSKPAEGKLIFCSGLVLHRLQCARGFG-DWIDSILAFSRS 492
Query: 316 LHLMEIDISAFACLCALTLI 335
LH + +D+ AFACL AL LI
Sbjct: 493 LHSLVVDVPAFACLSALVLI 512
>gi|441632234|ref|XP_003252164.2| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 4 group
A member 1 [Nomascus leucogenys]
Length = 587
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 170/332 (51%), Positives = 209/332 (62%), Gaps = 63/332 (18%)
Query: 11 SPKLRHS----APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
SP L S AP++S S +PG R CAVCGD A+CQHYGVRTCEGC
Sbjct: 226 SPHLEGSGILDAPVTSTKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGC 276
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
KGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRG
Sbjct: 277 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 336
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
RLPSKPK P P + P +L+T+L +R D
Sbjct: 337 RLPSKPKQP---PDASPANLLTSL------------------------------VRAHLD 363
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
P + L FQ L F +E + +QQFY LL+ S++VIR +A
Sbjct: 364 SGPSTAKLDYSK----FQELVLPHFGKE---------DAGDVQQFYDLLSGSLEVIRKWA 410
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG
Sbjct: 411 EKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG- 469
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 470 DWIDSILAFSRSLHSLVVDVPAFACLSALVLI 501
>gi|397522106|ref|XP_003831120.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 [Pan
paniscus]
Length = 652
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 170/332 (51%), Positives = 209/332 (62%), Gaps = 63/332 (18%)
Query: 11 SPKLRHS----APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
SP L S AP++S S +PG R CAVCGD A+CQHYGVRTCEGC
Sbjct: 291 SPHLEGSGILDAPVTSTKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGC 341
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
KGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRG
Sbjct: 342 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 401
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
RLPSKPK P P + P +L+T+L +R D
Sbjct: 402 RLPSKPKQP---PDASPANLLTSL------------------------------VRAHLD 428
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
P + L FQ L F +E + +QQFY LL+ S++VIR +A
Sbjct: 429 SGPSTAKLDYSK----FQELVLPRFGKE---------DAGDVQQFYDLLSGSLEVIRKWA 475
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG
Sbjct: 476 EKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG- 534
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 535 DWIDSILAFSRSLHSLLVDVPAFACLSALVLI 566
>gi|344266871|ref|XP_003405502.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
[Loxodonta africana]
Length = 600
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 169/329 (51%), Positives = 208/329 (63%), Gaps = 57/329 (17%)
Query: 11 SPKLRHSA----PLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGF 66
SP L S P++SA + G P CAVCGD A+CQHYGVRTCEGCKGF
Sbjct: 237 SPHLDGSGILDVPVTSAKARSG------APSGSEGRCAVCGDNASCQHYGVRTCEGCKGF 290
Query: 67 FKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLP 126
FKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLP
Sbjct: 291 FKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLP 350
Query: 127 SKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP 186
SKPK P P + P +L+T+L R P TT +D +
Sbjct: 351 SKPKQP---PDASPANLLTSLVRAHLDSGPS--------------TTKLDYSK------- 386
Query: 187 GFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 246
FQ L F +E + +QQFY LL+ S++VIR +A+KI
Sbjct: 387 -------------FQELMLPRFGKE---------DAGDVQQFYDLLSGSLEVIRKWAEKI 424
Query: 247 PGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWL 306
PGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+
Sbjct: 425 PGFTELSPGDQDLLLESAFLELFILRLAYRSKPAEGKLIFCSGLVLHRLQCARGFG-DWI 483
Query: 307 NAILEFCQSLHLMEIDISAFACLCALTLI 335
++IL F +SLH + +D+ AFACL AL LI
Sbjct: 484 DSILAFSRSLHSLVVDVPAFACLSALVLI 512
>gi|390340005|ref|XP_003725146.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
isoform 2 [Strongylocentrotus purpuratus]
Length = 730
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 171/322 (53%), Positives = 208/322 (64%), Gaps = 46/322 (14%)
Query: 15 RHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG 74
R ++P+ S S G + P PS +CAVCGD AACQHYGVRTCEGCKGFFKRTVQK
Sbjct: 368 RRNSPIMSLSPE-GPMITPPRTPSQEGMCAVCGDSAACQHYGVRTCEGCKGFFKRTVQKN 426
Query: 75 SKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQE 134
+KYVCLA+K C VDKRRRNRCQ+CRFQKCL GMVKEVVRTD+L+GRRGRLP+K ++ Q+
Sbjct: 427 AKYVCLANKNCTVDKRRRNRCQYCRFQKCLACGMVKEVVRTDNLRGRRGRLPTKQRNSQD 486
Query: 135 -SPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 193
PPSPPVSLITAL R A P K + YS DVI
Sbjct: 487 LPPPSPPVSLITALVRAHV-----DASPAKANRDYSQFRLPGDVIS-------------- 527
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 253
P + E++Q FY +S+DVIR +A++IPGFSDLC
Sbjct: 528 ------------------------PPPDNEQLQIFYDNFCSSIDVIRSWAERIPGFSDLC 563
Query: 254 KEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFC 313
+EDQ+LLFQS+ LELFVL++AYR ED ++FCNG VL QQC+R FG +WL+ I F
Sbjct: 564 REDQDLLFQSSCLELFVLKMAYRVNPEDPYVVFCNGNVLHNQQCERGFG-EWLDDIRAFS 622
Query: 314 QSLHLMEIDISAFACLCALTLI 335
+ L +EIDIS+FACL +L LI
Sbjct: 623 KVLSSLEIDISSFACLSSLVLI 644
>gi|50979006|ref|NP_001003227.1| nuclear receptor subfamily 4 group A member 1 [Canis lupus
familiaris]
gi|1709262|sp|P51666.1|NR4A1_CANFA RecName: Full=Nuclear receptor subfamily 4 group A member 1;
AltName: Full=Orphan nuclear receptor HMR; AltName:
Full=Orphan nuclear receptor NGFI-B
gi|1279347|emb|CAA65863.1| orphan nuclear receptor [Canis lupus familiaris]
Length = 598
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 175/343 (51%), Positives = 213/343 (62%), Gaps = 56/343 (16%)
Query: 2 QLG-RSSSSESPKLRHSAPLSSASSSPG-------CDTSRPTPPSPSQ-LCAVCGDIAAC 52
QLG R S S S AP S PG +R PS S+ CAVCGD A+C
Sbjct: 217 QLGERESYSISTAFPGLAPTSPHLDGPGMLDAPVPSAKARSGAPSGSEGRCAVCGDNASC 276
Query: 53 QHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEV 112
QHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEV
Sbjct: 277 QHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEV 336
Query: 113 VRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLT 172
VRTDSLKGRRGRLPSKPK P P + P +L+T+L
Sbjct: 337 VRTDSLKGRRGRLPSKPKQP---PDASPANLLTSL------------------------- 368
Query: 173 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLL 232
+R D P + L FQ L F +E + +QQFY LL
Sbjct: 369 -----VRAHLDSGPSTAKLDYSK----FQELVLPHFGKE---------DAGDVQQFYDLL 410
Query: 233 TTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVL 292
+ S++VIR +A+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL
Sbjct: 411 SGSLEVIRKWAEKIPGFAELSPGDQDLLLESAFLELFILRLAYRSKPAEGKLIFCSGLVL 470
Query: 293 EKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ QC R FG DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 471 HRLQCARGFG-DWIDSILAFSRSLHGLVVDVPAFACLSALVLI 512
>gi|197098126|ref|NP_001125545.1| nuclear receptor subfamily 4 group A member 1 [Pongo abelii]
gi|55728412|emb|CAH90950.1| hypothetical protein [Pongo abelii]
Length = 598
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 170/335 (50%), Positives = 211/335 (62%), Gaps = 63/335 (18%)
Query: 8 SSESPKLRHS----APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTC 60
+S SP L S AP++S S +PG R CAVCGD A+CQHYGVRTC
Sbjct: 234 ASTSPHLEGSGILDAPVTSTKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTC 284
Query: 61 EGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKG 120
EGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSL+G
Sbjct: 285 EGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLRG 344
Query: 121 RRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH 180
RRGRLPSKPK P P + P +L+T+L +R
Sbjct: 345 RRGRLPSKPKQP---PDASPANLLTSL------------------------------VRA 371
Query: 181 FADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIR 240
D P + L FQ L F +E + +QQFY LL+ S++VIR
Sbjct: 372 HLDSGPSTAKLDYSK----FQELVLPRFGKE---------DAGDVQQFYDLLSGSLEVIR 418
Query: 241 HFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS 300
+A+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R
Sbjct: 419 KWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARG 478
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
FG DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 479 FG-DWIDSILAFSRSLHSLVVDVPAFACLSALVLI 512
>gi|297262413|ref|XP_001085399.2| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 1
[Macaca mulatta]
gi|355564245|gb|EHH20745.1| Orphan nuclear receptor HMR [Macaca mulatta]
gi|355786109|gb|EHH66292.1| Orphan nuclear receptor HMR [Macaca fascicularis]
Length = 652
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 167/325 (51%), Positives = 205/325 (63%), Gaps = 49/325 (15%)
Query: 11 SPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
SP L S L + +S T P CAVCGD A+CQHYGVRTCEGCKGFFKRT
Sbjct: 291 SPHLEGSGILDAPVTS--TKTRSGAPGGTEGRCAVCGDNASCQHYGVRTCEGCKGFFKRT 348
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
VQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK
Sbjct: 349 VQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPK 408
Query: 131 SPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 190
P P + P +L+T+L +R D P +
Sbjct: 409 QP---PDASPANLLTSL------------------------------VRAHLDSGPSTAK 435
Query: 191 LCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 250
L FQ L F +E + +QQFY LL+ S++VIR +A+KIPGF+
Sbjct: 436 LDYSK----FQELVLPRFGKE---------DAGDVQQFYDLLSGSLEVIRKWAEKIPGFA 482
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAIL 310
+L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL
Sbjct: 483 ELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDSIL 541
Query: 311 EFCQSLHLMEIDISAFACLCALTLI 335
F +SLH + +D+ AFACL AL LI
Sbjct: 542 AFSRSLHSLVVDVPAFACLSALVLI 566
>gi|390340003|ref|XP_003725145.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
isoform 1 [Strongylocentrotus purpuratus]
gi|390340007|ref|XP_786266.3| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
isoform 3 [Strongylocentrotus purpuratus]
Length = 724
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 171/322 (53%), Positives = 208/322 (64%), Gaps = 46/322 (14%)
Query: 15 RHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG 74
R ++P+ S S G + P PS +CAVCGD AACQHYGVRTCEGCKGFFKRTVQK
Sbjct: 362 RRNSPIMSLSPE-GPMITPPRTPSQEGMCAVCGDSAACQHYGVRTCEGCKGFFKRTVQKN 420
Query: 75 SKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQE 134
+KYVCLA+K C VDKRRRNRCQ+CRFQKCL GMVKEVVRTD+L+GRRGRLP+K ++ Q+
Sbjct: 421 AKYVCLANKNCTVDKRRRNRCQYCRFQKCLACGMVKEVVRTDNLRGRRGRLPTKQRNSQD 480
Query: 135 -SPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 193
PPSPPVSLITAL R A P K + YS DVI
Sbjct: 481 LPPPSPPVSLITALVRAHV-----DASPAKANRDYSQFRLPGDVIS-------------- 521
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 253
P + E++Q FY +S+DVIR +A++IPGFSDLC
Sbjct: 522 ------------------------PPPDNEQLQIFYDNFCSSIDVIRSWAERIPGFSDLC 557
Query: 254 KEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFC 313
+EDQ+LLFQS+ LELFVL++AYR ED ++FCNG VL QQC+R FG +WL+ I F
Sbjct: 558 REDQDLLFQSSCLELFVLKMAYRVNPEDPYVVFCNGNVLHNQQCERGFG-EWLDDIRAFS 616
Query: 314 QSLHLMEIDISAFACLCALTLI 335
+ L +EIDIS+FACL +L LI
Sbjct: 617 KVLSSLEIDISSFACLSSLVLI 638
>gi|402886042|ref|XP_003906450.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 4
[Papio anubis]
Length = 652
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 170/332 (51%), Positives = 209/332 (62%), Gaps = 63/332 (18%)
Query: 11 SPKLRHS----APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
SP L S AP++S S +PG R CAVCGD A+CQHYGVRTCEGC
Sbjct: 291 SPHLEGSGILDAPVTSTKARSGAPGGTEGR---------CAVCGDNASCQHYGVRTCEGC 341
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
KGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRG
Sbjct: 342 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 401
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
RLPSKPK P P + P +L+T+L +R D
Sbjct: 402 RLPSKPKQP---PDASPANLLTSL------------------------------VRAHLD 428
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
P + L FQ L F +E + +QQFY LL+ S++VIR +A
Sbjct: 429 SGPSTAKLDYSK----FQELVLPRFGKE---------DAGDVQQFYDLLSGSLEVIRKWA 475
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG
Sbjct: 476 EKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG- 534
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 535 DWIDSILAFSRSLHSLVVDVPAFACLSALVLI 566
>gi|426372588|ref|XP_004053204.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 3
[Gorilla gorilla gorilla]
Length = 611
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 170/332 (51%), Positives = 209/332 (62%), Gaps = 63/332 (18%)
Query: 11 SPKLRHS----APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
SP L S AP++S S +PG R CAVCGD A+CQHYGVRTCEGC
Sbjct: 250 SPHLEGSGILDAPVTSTKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGC 300
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
KGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRG
Sbjct: 301 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 360
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
RLPSKPK P P + P +L+T+L +R D
Sbjct: 361 RLPSKPKQP---PDASPANLLTSL------------------------------VRAHLD 387
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
P + L FQ L F +E + +QQFY LL+ S++VIR +A
Sbjct: 388 SGPSTAKLDYSK----FQELVLPRFGKE---------DAGDVQQFYDLLSGSLEVIRKWA 434
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG
Sbjct: 435 EKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG- 493
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 494 DWIDSILAFSRSLHSLLVDVPAFACLSALVLI 525
>gi|399498497|ref|NP_077364.2| nuclear receptor subfamily 4 group A member 1 [Rattus norvegicus]
gi|1709263|sp|P22829.2|NR4A1_RAT RecName: Full=Nuclear receptor subfamily 4 group A member 1;
AltName: Full=NUR77; AltName: Full=Nerve growth
factor-induced protein I-B; Short=NGFI-B; AltName:
Full=Orphan nuclear receptor HMR
gi|149031991|gb|EDL86903.1| nuclear receptor subfamily 4, group A, member 1 [Rattus norvegicus]
Length = 597
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 175/347 (50%), Positives = 212/347 (61%), Gaps = 64/347 (18%)
Query: 2 QLGRSSSSESPKLRHSAPLSSASSSPGCDTS----RPTPPSPSQL---------CAVCGD 48
QLG S P +A A +SP CDTS P + ++ CAVCGD
Sbjct: 216 QLGEGESYSVP----AAFPGLAPTSPNCDTSGILDAPVTSTKARSGSSGGSEGRCAVCGD 271
Query: 49 IAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGM 108
A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGM
Sbjct: 272 NASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGM 331
Query: 109 VKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFY 168
VKEVVRTDSLKGRRGRLPSKPK P P + P +L+T+L
Sbjct: 332 VKEVVRTDSLKGRRGRLPSKPKQP---PDASPTNLLTSL--------------------- 367
Query: 169 SLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQF 228
IR D P + L FQ L F +E + +QQF
Sbjct: 368 ---------IRAHLDSGPNTAKLDYSK----FQELVLPRFGKE---------DAGDVQQF 405
Query: 229 YSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCN 288
Y LL+ S+DVIR +A+KIPGF +L DQ+LL +SA LELF+LRLAYR++ + KLIFC+
Sbjct: 406 YDLLSGSLDVIRKWAEKIPGFIELSPGDQDLLLESAFLELFILRLAYRSKPGEGKLIFCS 465
Query: 289 GVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G+VL + QC R FG DW++ IL F +SLH + +D+ AFACL AL LI
Sbjct: 466 GLVLHRLQCARGFG-DWIDNILAFSRSLHSLGVDVPAFACLSALVLI 511
>gi|417411882|gb|JAA52360.1| Putative nuclear receptor of the nerve growth factor-induced
protein b type, partial [Desmodus rotundus]
Length = 600
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 163/319 (51%), Positives = 205/319 (64%), Gaps = 53/319 (16%)
Query: 17 SAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSK 76
+ P++SA S G P CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +K
Sbjct: 249 NMPVTSAKSRSG------APGGSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAK 302
Query: 77 YVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESP 136
Y+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKP+ P P
Sbjct: 303 YICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPRQP---P 359
Query: 137 PSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 196
P +L+T+L +R D P + L
Sbjct: 360 DVSPANLLTSL------------------------------VRAHLDSGPSTAKLDYSK- 388
Query: 197 ELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 256
FQ +L F +E + ++QFY LL+ S++VIR +A+KIPGF++LC D
Sbjct: 389 ---FQELALPHFGKE---------DAGDVRQFYDLLSGSLEVIRKWAEKIPGFAELCAGD 436
Query: 257 QELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSL 316
++LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL F +SL
Sbjct: 437 RDLLLESAFLELFILRLAYRSKPAEGKLIFCSGLVLHRLQCTRGFG-DWIDSILAFSRSL 495
Query: 317 HLMEIDISAFACLCALTLI 335
H + +D+ AFACL AL LI
Sbjct: 496 HSLVVDVPAFACLSALVLI 514
>gi|402886036|ref|XP_003906447.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 1
[Papio anubis]
gi|402886038|ref|XP_003906448.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 2
[Papio anubis]
gi|402886044|ref|XP_003906451.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 5
[Papio anubis]
Length = 598
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 170/332 (51%), Positives = 209/332 (62%), Gaps = 63/332 (18%)
Query: 11 SPKLRHS----APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
SP L S AP++S S +PG R CAVCGD A+CQHYGVRTCEGC
Sbjct: 237 SPHLEGSGILDAPVTSTKARSGAPGGTEGR---------CAVCGDNASCQHYGVRTCEGC 287
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
KGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRG
Sbjct: 288 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 347
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
RLPSKPK P P + P +L+T+L +R D
Sbjct: 348 RLPSKPKQP---PDASPANLLTSL------------------------------VRAHLD 374
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
P + L FQ L F +E + +QQFY LL+ S++VIR +A
Sbjct: 375 SGPSTAKLDYSK----FQELVLPRFGKE---------DAGDVQQFYDLLSGSLEVIRKWA 421
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG
Sbjct: 422 EKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG- 480
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 481 DWIDSILAFSRSLHSLVVDVPAFACLSALVLI 512
>gi|426372584|ref|XP_004053202.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 1
[Gorilla gorilla gorilla]
gi|426372586|ref|XP_004053203.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 2
[Gorilla gorilla gorilla]
gi|426372590|ref|XP_004053205.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 4
[Gorilla gorilla gorilla]
Length = 598
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 170/332 (51%), Positives = 209/332 (62%), Gaps = 63/332 (18%)
Query: 11 SPKLRHS----APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
SP L S AP++S S +PG R CAVCGD A+CQHYGVRTCEGC
Sbjct: 237 SPHLEGSGILDAPVTSTKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGC 287
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
KGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRG
Sbjct: 288 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 347
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
RLPSKPK P P + P +L+T+L +R D
Sbjct: 348 RLPSKPKQP---PDASPANLLTSL------------------------------VRAHLD 374
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
P + L FQ L F +E + +QQFY LL+ S++VIR +A
Sbjct: 375 SGPSTAKLDYSK----FQELVLPRFGKE---------DAGDVQQFYDLLSGSLEVIRKWA 421
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG
Sbjct: 422 EKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG- 480
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 481 DWIDSILAFSRSLHSLLVDVPAFACLSALVLI 512
>gi|119578627|gb|EAW58223.1| nuclear receptor subfamily 4, group A, member 1, isoform CRA_b
[Homo sapiens]
Length = 670
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 163/312 (52%), Positives = 200/312 (64%), Gaps = 56/312 (17%)
Query: 24 SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK 83
S +PG R CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K
Sbjct: 329 SGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANK 379
Query: 84 ACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSL 143
CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK P P + P +L
Sbjct: 380 DCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQP---PDASPANL 436
Query: 144 ITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 203
+T+L +R D P + L FQ
Sbjct: 437 LTSL------------------------------VRAHLDSGPSTAKLDYSK----FQEL 462
Query: 204 SLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 263
L F +E + +QQFY LL+ S++VIR +A+KIPGF++L DQ+LL +S
Sbjct: 463 VLPHFGKE---------DAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLES 513
Query: 264 ASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDI 323
A LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL F +SLH + +D+
Sbjct: 514 AFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDSILAFSRSLHSLLVDV 572
Query: 324 SAFACLCALTLI 335
AFACL AL LI
Sbjct: 573 PAFACLSALVLI 584
>gi|297262409|ref|XP_002798634.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 2
[Macaca mulatta]
gi|297262411|ref|XP_002798635.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 3
[Macaca mulatta]
Length = 598
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 167/325 (51%), Positives = 205/325 (63%), Gaps = 49/325 (15%)
Query: 11 SPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
SP L S L + +S T P CAVCGD A+CQHYGVRTCEGCKGFFKRT
Sbjct: 237 SPHLEGSGILDAPVTS--TKTRSGAPGGTEGRCAVCGDNASCQHYGVRTCEGCKGFFKRT 294
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
VQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK
Sbjct: 295 VQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPK 354
Query: 131 SPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 190
P P + P +L+T+L +R D P +
Sbjct: 355 QP---PDASPANLLTSL------------------------------VRAHLDSGPSTAK 381
Query: 191 LCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 250
L FQ L F +E + +QQFY LL+ S++VIR +A+KIPGF+
Sbjct: 382 LDYSK----FQELVLPRFGKE---------DAGDVQQFYDLLSGSLEVIRKWAEKIPGFA 428
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAIL 310
+L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL
Sbjct: 429 ELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDSIL 487
Query: 311 EFCQSLHLMEIDISAFACLCALTLI 335
F +SLH + +D+ AFACL AL LI
Sbjct: 488 AFSRSLHSLVVDVPAFACLSALVLI 512
>gi|596054|gb|AAA56770.1| NGFI-B [Rattus norvegicus]
gi|133777128|gb|AAH97313.2| Nuclear receptor subfamily 4, group A, member 1 [Rattus norvegicus]
Length = 563
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 175/347 (50%), Positives = 212/347 (61%), Gaps = 64/347 (18%)
Query: 2 QLGRSSSSESPKLRHSAPLSSASSSPGCDTS----RPTPPSPSQL---------CAVCGD 48
QLG S P +A A +SP CDTS P + ++ CAVCGD
Sbjct: 182 QLGEGESYSVP----AAFPGLAPTSPNCDTSGILDAPVTSTKARSGSSGGSEGRCAVCGD 237
Query: 49 IAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGM 108
A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGM
Sbjct: 238 NASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGM 297
Query: 109 VKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFY 168
VKEVVRTDSLKGRRGRLPSKPK P P + P +L+T+L
Sbjct: 298 VKEVVRTDSLKGRRGRLPSKPKQP---PDASPTNLLTSL--------------------- 333
Query: 169 SLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQF 228
IR D P + L FQ L F +E + +QQF
Sbjct: 334 ---------IRAHLDSGPNTAKLDYSK----FQELVLPRFGKE---------DAGDVQQF 371
Query: 229 YSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCN 288
Y LL+ S+DVIR +A+KIPGF +L DQ+LL +SA LELF+LRLAYR++ + KLIFC+
Sbjct: 372 YDLLSGSLDVIRKWAEKIPGFIELSPGDQDLLLESAFLELFILRLAYRSKPGEGKLIFCS 431
Query: 289 GVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G+VL + QC R FG DW++ IL F +SLH + +D+ AFACL AL LI
Sbjct: 432 GLVLHRLQCARGFG-DWIDNILAFSRSLHSLGVDVPAFACLSALVLI 477
>gi|296211713|ref|XP_002752535.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 1
[Callithrix jacchus]
gi|390467657|ref|XP_003733799.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 2
[Callithrix jacchus]
Length = 598
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 171/332 (51%), Positives = 212/332 (63%), Gaps = 63/332 (18%)
Query: 11 SPKLRHS----APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
SP L S AP++S + +PG R CAVCGD A+CQHYGVRTCEGC
Sbjct: 237 SPHLEGSGILDAPMTSTKARNGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGC 287
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
KGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRG
Sbjct: 288 KGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 347
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
RLPSKPK +SP + P +L+T+L R P A+ + +F L V+ HF
Sbjct: 348 RLPSKPK---QSPDASPANLLTSLVRAHLDSGPSTAKLD-YSKFQEL------VLPHFG- 396
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
KED +QQFY LL+ S++VIR +A
Sbjct: 397 ---------KEDAG--------------------------DVQQFYDLLSGSLEVIRKWA 421
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG
Sbjct: 422 EKIPGFAELSLADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG- 480
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 481 DWIDSILAFSRSLHSLVVDVPAFACLSALVLI 512
>gi|348518115|ref|XP_003446577.1| PREDICTED: nuclear receptor subfamily 4 group A member 2-like
[Oreochromis niloticus]
Length = 581
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 165/313 (52%), Positives = 202/313 (64%), Gaps = 53/313 (16%)
Query: 24 SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK 83
SS+PG P S +CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA K
Sbjct: 234 SSAPG-----RGPLSSEGVCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLAAK 288
Query: 84 ACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS-PQESPPSPPVS 142
+CPVDKRRRNRCQ+CRFQKCL VGMVKEVVRTDSLKGRRGRLPSKP++ P S SP +
Sbjct: 289 SCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPRALPDAS--SPGST 346
Query: 143 LITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 202
L++AL R PP P D K
Sbjct: 347 LLSALIRAHVESNPP----------------------------PSRLDYSK--------- 369
Query: 203 ASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ 262
++E NP PP + + ++QFY LLT S++VIR +A KIPGF+ L K DQ+LLF
Sbjct: 370 ------FKE-NPGSPPGDDAQHVRQFYDLLTRSMEVIRGWAQKIPGFTSLPKHDQDLLFY 422
Query: 263 SASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEID 322
SA LELFVLRL+YR+ E+ KLIFC+G V + QC R FG +W+++I+EF +L M +D
Sbjct: 423 SAFLELFVLRLSYRSNPEEGKLIFCDGSVWHRLQCLRGFG-EWIDSIVEFSANLQRMNLD 481
Query: 323 ISAFACLCALTLI 335
+S F+C+C L L+
Sbjct: 482 VSTFSCICTLALV 494
>gi|320202956|ref|NP_001189162.1| nuclear receptor subfamily 4 group A member 1 isoform 2 [Homo
sapiens]
gi|119578626|gb|EAW58222.1| nuclear receptor subfamily 4, group A, member 1, isoform CRA_a
[Homo sapiens]
gi|194387126|dbj|BAG59929.1| unnamed protein product [Homo sapiens]
Length = 611
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 168/325 (51%), Positives = 207/325 (63%), Gaps = 49/325 (15%)
Query: 11 SPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
SP L S L + +S + P CAVCGD A+CQHYGVRTCEGCKGFFKRT
Sbjct: 250 SPHLEGSGILDTPVTSTKARSGAPG--GSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRT 307
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
VQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK
Sbjct: 308 VQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPK 367
Query: 131 SPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 190
P P + P +L+T+L R P A+ + +F L V+ HF
Sbjct: 368 QP---PDASPANLLTSLVRAHLDSGPSTAKLD-YSKFQEL------VLPHFG-------- 409
Query: 191 LCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 250
KED +QQFY LL+ S++VIR +A+KIPGF+
Sbjct: 410 --KEDAG--------------------------DVQQFYDLLSGSLEVIRKWAEKIPGFA 441
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAIL 310
+L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL
Sbjct: 442 ELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDSIL 500
Query: 311 EFCQSLHLMEIDISAFACLCALTLI 335
F +SLH + +D+ AFACL AL LI
Sbjct: 501 AFSRSLHSLLVDVPAFACLSALVLI 525
>gi|52545682|emb|CAD38550.2| hypothetical protein [Homo sapiens]
Length = 598
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 161/293 (54%), Positives = 197/293 (67%), Gaps = 47/293 (16%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQK
Sbjct: 267 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQK 326
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPK P P + P +L+T+L R P A+ +
Sbjct: 327 CLAVGMVKEVVRTDSLKGRRGRLPSKPKQP---PDASPANLLTSLVRAHLDSGPSTAKLD 383
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
+F L V+ HF KED
Sbjct: 384 -YSKFQEL------VLPHFG----------KEDAG------------------------- 401
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+QQFY LL+ S++VIR +A+KIPGF++L DQ+LL +SA LELF+LRLAYR++ +
Sbjct: 402 -DVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEG 460
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KLIFC+G+VL + QC R FG DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 461 KLIFCSGLVLHRLQCARGFG-DWIDSILAFSRSLHSLLVDVPAFACLSALVLI 512
>gi|30584675|gb|AAP36590.1| Homo sapiens nuclear receptor subfamily 4, group A, member 1
[synthetic construct]
gi|61370617|gb|AAX43525.1| nuclear receptor subfamily 4 group A member 1 [synthetic construct]
gi|61370625|gb|AAX43526.1| nuclear receptor subfamily 4 group A member 1 [synthetic construct]
Length = 599
Score = 300 bits (768), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 168/325 (51%), Positives = 207/325 (63%), Gaps = 49/325 (15%)
Query: 11 SPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
SP L S L + +S + P CAVCGD A+CQHYGVRTCEGCKGFFKRT
Sbjct: 237 SPHLEGSGILDTPVTSTKARSGAPG--GSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRT 294
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
VQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK
Sbjct: 295 VQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPK 354
Query: 131 SPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 190
P P + P +L+T+L R P A+ + +F L V+ HF
Sbjct: 355 QP---PDASPANLLTSLVRAHLDSGPSTAKLD-YSKFQEL------VLPHFG-------- 396
Query: 191 LCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 250
KED +QQFY LL+ S++VIR +A+KIPGF+
Sbjct: 397 --KEDAG--------------------------DVQQFYDLLSGSLEVIRKWAEKIPGFA 428
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAIL 310
+L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL
Sbjct: 429 ELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDSIL 487
Query: 311 EFCQSLHLMEIDISAFACLCALTLI 335
F +SLH + +D+ AFACL AL LI
Sbjct: 488 AFSRSLHSLLVDVPAFACLSALVLI 512
>gi|21361342|ref|NP_002126.2| nuclear receptor subfamily 4 group A member 1 isoform 1 [Homo
sapiens]
gi|27894344|ref|NP_775180.1| nuclear receptor subfamily 4 group A member 1 isoform 1 [Homo
sapiens]
gi|127819|sp|P22736.1|NR4A1_HUMAN RecName: Full=Nuclear receptor subfamily 4 group A member 1;
AltName: Full=Early response protein NAK1; AltName:
Full=Nuclear hormone receptor NUR/77; Short=Nur77;
AltName: Full=Orphan nuclear receptor HMR; AltName:
Full=Orphan nuclear receptor TR3; AltName: Full=ST-59;
AltName: Full=Testicular receptor 3
gi|1813882|dbj|BAA08565.1| DNA binding protein [Homo sapiens]
gi|16359383|gb|AAH16147.1| Nuclear receptor subfamily 4, group A, member 1 [Homo sapiens]
gi|30583127|gb|AAP35808.1| nuclear receptor subfamily 4, group A, member 1 [Homo sapiens]
gi|61360895|gb|AAX41947.1| nuclear receptor subfamily 4 group A member 1 [synthetic construct]
gi|61360899|gb|AAX41948.1| nuclear receptor subfamily 4 group A member 1 [synthetic construct]
gi|119578629|gb|EAW58225.1| nuclear receptor subfamily 4, group A, member 1, isoform CRA_d
[Homo sapiens]
gi|119578630|gb|EAW58226.1| nuclear receptor subfamily 4, group A, member 1, isoform CRA_d
[Homo sapiens]
gi|119578631|gb|EAW58227.1| nuclear receptor subfamily 4, group A, member 1, isoform CRA_d
[Homo sapiens]
gi|119578632|gb|EAW58228.1| nuclear receptor subfamily 4, group A, member 1, isoform CRA_d
[Homo sapiens]
gi|123980462|gb|ABM82060.1| nuclear receptor subfamily 4, group A, member 1 [synthetic
construct]
gi|123995275|gb|ABM85239.1| nuclear receptor subfamily 4, group A, member 1 [synthetic
construct]
gi|216409742|dbj|BAH02308.1| nuclear receptor subfamily 4 [Homo sapiens]
gi|307684740|dbj|BAJ20410.1| nuclear receptor subfamily 4, group A, member 1 [synthetic
construct]
gi|325495521|gb|ADZ17366.1| nerve growth factor IB nuclear receptor variant 1 [Homo sapiens]
Length = 598
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 168/325 (51%), Positives = 207/325 (63%), Gaps = 49/325 (15%)
Query: 11 SPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
SP L S L + +S + P CAVCGD A+CQHYGVRTCEGCKGFFKRT
Sbjct: 237 SPHLEGSGILDTPVTSTKARSGAPG--GSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRT 294
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
VQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK
Sbjct: 295 VQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPK 354
Query: 131 SPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 190
P P + P +L+T+L R P A+ + +F L V+ HF
Sbjct: 355 QP---PDASPANLLTSLVRAHLDSGPSTAKLD-YSKFQEL------VLPHFG-------- 396
Query: 191 LCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 250
KED +QQFY LL+ S++VIR +A+KIPGF+
Sbjct: 397 --KEDAG--------------------------DVQQFYDLLSGSLEVIRKWAEKIPGFA 428
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAIL 310
+L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL
Sbjct: 429 ELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDSIL 487
Query: 311 EFCQSLHLMEIDISAFACLCALTLI 335
F +SLH + +D+ AFACL AL LI
Sbjct: 488 AFSRSLHSLLVDVPAFACLSALVLI 512
>gi|343958788|dbj|BAK63249.1| orphan nuclear receptor NR4A1 [Pan troglodytes]
Length = 598
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 170/332 (51%), Positives = 209/332 (62%), Gaps = 63/332 (18%)
Query: 11 SPKLRHS----APLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
SP L S AP++S S +PG R CAVCGD A+CQHYGVRTCEGC
Sbjct: 237 SPHLEGSGILDAPVTSTKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGC 287
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
KGFFKRTVQK +KY+CLA+K PVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRG
Sbjct: 288 KGFFKRTVQKNAKYICLANKDRPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRG 347
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
RLPSKPK P P + P +L+T+L +R D
Sbjct: 348 RLPSKPKQP---PDASPANLLTSL------------------------------VRAHLD 374
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
P + L FQ L F +E + E +QQFY LL+ S++VIR +A
Sbjct: 375 SGPSTAKLDYSK----FQELVLPRFGKE---------DAEDVQQFYDLLSGSLEVIRKWA 421
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG
Sbjct: 422 EKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG- 480
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 481 DWIDSILAFSRSLHSLLVDVPAFACLSALVLI 512
>gi|410964465|ref|XP_003988775.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 1
[Felis catus]
gi|410964467|ref|XP_003988776.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 2
[Felis catus]
Length = 598
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 173/343 (50%), Positives = 211/343 (61%), Gaps = 56/343 (16%)
Query: 2 QLG-RSSSSESPKLRHSAPLSSASSSPGC-DTSRPT-------PPSPSQLCAVCGDIAAC 52
QLG R S S S AP S PG D P+ P CAVCGD A+C
Sbjct: 217 QLGERESYSMSAAFPGLAPTSPHLDGPGMLDVPVPSAKARSGAPGGSEGRCAVCGDNASC 276
Query: 53 QHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEV 112
QHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEV
Sbjct: 277 QHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEV 336
Query: 113 VRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLT 172
VRTDSLKGRRGRLPSKPK P P + P +L+T+L
Sbjct: 337 VRTDSLKGRRGRLPSKPKQP---PDASPANLLTSL------------------------- 368
Query: 173 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLL 232
+R D P + L FQ L F +E + +QQFY LL
Sbjct: 369 -----VRAHLDSGPSTAKLDYSK----FQELVLPHFGKE---------DAGDVQQFYDLL 410
Query: 233 TTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVL 292
++S++VIR +A+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL
Sbjct: 411 SSSLEVIRKWAEKIPGFAELSPGDQDLLLESAFLELFILRLAYRSKPAEGKLIFCSGLVL 470
Query: 293 EKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ QC FG DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 471 HRLQCAPGFG-DWIDSILAFSRSLHGLVVDVPAFACLSALVLI 512
>gi|355707918|gb|AES03106.1| nuclear receptor subfamily 4, group A, member 2 [Mustela putorius
furo]
Length = 334
Score = 300 bits (767), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 159/293 (54%), Positives = 195/293 (66%), Gaps = 47/293 (16%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQK
Sbjct: 4 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQK 63
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPK P P + P +L+T+L R P A+ +
Sbjct: 64 CLAVGMVKEVVRTDSLKGRRGRLPSKPKQP---PDASPANLLTSLVRAHLDSGPSTAKLD 120
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
+F L V+ HF + G
Sbjct: 121 -YSKFQEL------VLPHFGKEDAG----------------------------------- 138
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+QQFY LL+ S++VIR +A+KIPGF++L DQ+LL +SA LELFVLRLAYR+ +
Sbjct: 139 -DVQQFYDLLSGSLEVIRKWAEKIPGFAELSPSDQDLLLESAFLELFVLRLAYRSNPVEG 197
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 198 KLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 249
>gi|48145525|emb|CAG32985.1| NR4A1 [Homo sapiens]
Length = 598
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 168/325 (51%), Positives = 207/325 (63%), Gaps = 49/325 (15%)
Query: 11 SPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
SP L S L + +S + P CAVCGD A+CQHYGVRTCEGCKGFFKRT
Sbjct: 237 SPHLEGSGILDTPVTSTKARSGAPG--GSEGRCAVCGDNASCQHYGVRTCEGCKGFFKRT 294
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
VQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK
Sbjct: 295 VQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPK 354
Query: 131 SPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 190
P P + P +L+T+L R P A+ + +F L V+ HF
Sbjct: 355 QP---PDAFPANLLTSLVRAHLDSGPSTAKLD-YSKFQEL------VLPHFG-------- 396
Query: 191 LCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 250
KED +QQFY LL+ S++VIR +A+KIPGF+
Sbjct: 397 --KEDAG--------------------------DVQQFYDLLSGSLEVIRKWAEKIPGFA 428
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAIL 310
+L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL
Sbjct: 429 ELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDSIL 487
Query: 311 EFCQSLHLMEIDISAFACLCALTLI 335
F +SLH + +D+ AFACL AL LI
Sbjct: 488 AFSRSLHSLLVDVPAFACLSALVLI 512
>gi|351697568|gb|EHB00487.1| Nuclear receptor subfamily 4 group A member 1 [Heterocephalus
glaber]
Length = 598
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 156/293 (53%), Positives = 195/293 (66%), Gaps = 47/293 (16%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQK
Sbjct: 294 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 353
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPK P P + P +L+T+L
Sbjct: 354 CLAVGMVKEVVRTDSLKGRRGRLPSKPKQP---PDASPANLLTSL--------------- 395
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
+R D P + L FQ L F +E +
Sbjct: 396 ---------------VRAHLDSGPSTAKLDYSK----FQEPVLPRFGKE---------DA 427
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+QQFY +L++S++VIR +A+KIPGF++L DQ+LL SA LELF+LRLAYR++ +
Sbjct: 428 GDVQQFYDVLSSSLEVIRKWAEKIPGFAELSPADQDLLLDSAFLELFILRLAYRSKPGEG 487
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+FC+G+VL + QC R FG DW+++IL F ++LH + +D+ AFACL AL LI
Sbjct: 488 KLVFCSGLVLHRLQCARGFG-DWIDSILAFSRTLHSLVVDVPAFACLSALVLI 539
>gi|297478017|ref|XP_002689787.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Bos
taurus]
gi|358413548|ref|XP_002684287.2| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Bos
taurus]
gi|296484634|tpg|DAA26749.1| TPA: nuclear receptor subfamily 4, group A, member 3 [Bos taurus]
Length = 648
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 155/296 (52%), Positives = 186/296 (62%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 314 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 373
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP + E
Sbjct: 374 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLQQ------------------------EAS 409
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+ + ++R D P +S C DQ A
Sbjct: 410 QPSPPSPPICMMNALVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 453
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 454 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 510
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F SL + +DI A ACL AL+++
Sbjct: 511 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLSLQSLNLDIQALACLSALSMV 565
>gi|440905024|gb|ELR55472.1| Nuclear receptor subfamily 4 group A member 3 [Bos grunniens mutus]
Length = 546
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 155/296 (52%), Positives = 186/296 (62%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 212 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 271
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP + E
Sbjct: 272 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLQQ------------------------EAS 307
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+ + ++R D P +S C DQ A
Sbjct: 308 QPSPPSPPICMMNALVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 351
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 352 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 408
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F SL + +DI A ACL AL+++
Sbjct: 409 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLSLQSLNLDIQALACLSALSMV 463
>gi|397499981|ref|XP_003820708.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Pan
paniscus]
Length = 561
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 275 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 334
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 335 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 373
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 374 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 414
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 415 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 471
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 472 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 526
>gi|348569978|ref|XP_003470774.1| PREDICTED: nuclear receptor subfamily 4 group A member 3-like
[Cavia porcellus]
Length = 788
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 155/296 (52%), Positives = 186/296 (62%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 454 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 513
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP EP
Sbjct: 514 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLHQ------------------------EPS 549
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+ + ++R D P +S C DQ A
Sbjct: 550 QPSPPSPPICMMNALVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 593
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL +EDQ LL +SA LELFVLRL+ R+
Sbjct: 594 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPREDQTLLIESAFLELFVLRLSIRSNT 650
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 651 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 705
>gi|405950887|gb|EKC18844.1| Putative nuclear hormone receptor HR38 [Crassostrea gigas]
Length = 664
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 171/301 (56%), Positives = 198/301 (65%), Gaps = 47/301 (15%)
Query: 36 PPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRC 95
P LCAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLADK CPVDKRRRNRC
Sbjct: 321 PQREGMLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLADKNCPVDKRRRNRC 380
Query: 96 QFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLE 155
QFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQES PSPPVSLIT L
Sbjct: 381 QFCRFQKCLSVGMVKEVVRTDSLKGRRGRLPSKPKSPQESSPSPPVSLITLL-------- 432
Query: 156 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
+R D P S C E+ P
Sbjct: 433 ----------------------VRAHLDSSPDKSSHCYSKYEV---------------PC 455
Query: 216 EPPIAEPEKI-QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
EK Q FY L+T+SV++I+ ++ KIPGFSD+C+EDQ LLF+SASLELFVLRL+
Sbjct: 456 TKSEGCNEKTTQMFYDLITSSVNIIKAWSTKIPGFSDICQEDQNLLFKSASLELFVLRLS 515
Query: 275 YRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
YR + +IF +G VL ++QC+ FG DW+N+I +F SL+ M +DISA AC+ ALTL
Sbjct: 516 YRMQGNTDNVIFEDGTVLHRKQCEEIFG-DWINSIADFSTSLYRMSLDISALACMEALTL 574
Query: 335 I 335
+
Sbjct: 575 V 575
>gi|351699362|gb|EHB02281.1| Nuclear receptor subfamily 4 group A member 3, partial
[Heterocephalus glaber]
Length = 570
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 187/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 236 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 295
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP EP
Sbjct: 296 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLHQ------------------------EPS 331
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+ + ++R D P +S C DQ
Sbjct: 332 QPSPPSPPICMMNALVRALTDSTPRDLDYSRYCPTDQAATG------------------- 372
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 373 SEAEHVQQFYNLLTASIDVSRSWAEKIPGFTDLLKEDQTLLIESAFLELFVLRLSIRSNT 432
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 433 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 487
>gi|47077635|dbj|BAD18699.1| unnamed protein product [Homo sapiens]
Length = 652
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 164/312 (52%), Positives = 201/312 (64%), Gaps = 56/312 (17%)
Query: 24 SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADK 83
S +PG R CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K
Sbjct: 311 SGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANK 361
Query: 84 ACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSL 143
CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK P P + P +L
Sbjct: 362 DCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKQP---PDASPANL 418
Query: 144 ITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 203
+T+L R P A+ + +F L V+ HF KED
Sbjct: 419 LTSLVRAHLDSGPSTAKLD-YSKFQEL------VLPHFG----------KEDAG------ 455
Query: 204 SLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 263
+QQFY LL+ S++VIR +A+KIPGF++L DQ+LL +S
Sbjct: 456 --------------------DVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLES 495
Query: 264 ASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDI 323
A LELF+LRLAYR++ + KLIFC+G+VL + QC R FGD +++IL F +SLH + +D+
Sbjct: 496 AFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDR-IDSILAFSRSLHSLLVDV 554
Query: 324 SAFACLCALTLI 335
AFACL AL LI
Sbjct: 555 PAFACLSALVLI 566
>gi|403298735|ref|XP_003940164.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Saimiri
boliviensis boliviensis]
Length = 635
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 301 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 360
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 361 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 399
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 400 PPSPPVCMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 440
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 441 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 497
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 498 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 552
>gi|426220134|ref|XP_004004272.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 4 group
A member 3 [Ovis aries]
Length = 630
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 159/299 (53%), Positives = 194/299 (64%), Gaps = 52/299 (17%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 295 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 354
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPS------PPVSLITALYREPNPLEP 156
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP + S PP+ ++ AL R P
Sbjct: 355 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLQQEASQPSPPSPPICMMNALVRALTDSTP 414
Query: 157 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
+ ++++ VI H + KED
Sbjct: 415 RDLDYSRLEEM---------VILH----------VLKED--------------------- 434
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R
Sbjct: 435 -----AEHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIR 489
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + K +FCNG+VL + QC R FG +WL++I +F SL + +DI A ACL AL+++
Sbjct: 490 SNTAEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLSLQSLNLDIQALACLSALSMV 547
>gi|1311505|gb|AAB36006.1| steroid/thyroid orphan receptor homolog gene [Homo sapiens]
Length = 684
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 350 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 409
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 410 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 448
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 449 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 489
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 490 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 546
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 547 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 601
>gi|47523566|ref|NP_999412.1| neuron-derived orphan receptor-1 alfa [Sus scrofa]
gi|3821743|emb|CAA09763.1| neuron-derived orphan receptor-1 alfa [Sus scrofa]
Length = 643
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 164/322 (50%), Positives = 199/322 (61%), Gaps = 52/322 (16%)
Query: 22 SASSSPGCDTSRPTPPSPSQ-----LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSK 76
+ SS G S P+PP+ S CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +K
Sbjct: 283 TTSSLLGESPSLPSPPNRSTASGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAK 342
Query: 77 YVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESP 136
YVCLA+K CPVDKRRRNRCQ+CRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSP
Sbjct: 343 YVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---- 398
Query: 137 PSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP---GFSDLCK 193
L+ ++P ++ ++R D P +S C
Sbjct: 399 -----------------LQQEPSQPSPPSPPVCMMNA---LVRALTDSTPRDLDYSRYCP 438
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 253
DQ A E +QQFY+LLT S+DV R +A+KIPGF+DL
Sbjct: 439 ADQAAAGTDA-------------------EHVQQFYNLLTASIDVSRSWAEKIPGFTDLP 479
Query: 254 KEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFC 313
KEDQ LL +SA LELFVLRL+ R+ + K +FCNG+VL + QC R FG +WL++I +F
Sbjct: 480 KEDQTLLIESAFLELFVLRLSIRSNTAEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFS 538
Query: 314 QSLHLMEIDISAFACLCALTLI 335
L + +DI A ACL AL++I
Sbjct: 539 LRLQSLNLDIQALACLSALSMI 560
>gi|345315955|ref|XP_001507048.2| PREDICTED: nuclear receptor subfamily 4 group A member 3-like
[Ornithorhynchus anatinus]
Length = 562
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 165/334 (49%), Positives = 207/334 (61%), Gaps = 48/334 (14%)
Query: 5 RSSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCK 64
R+++ P+L +A L A G T T P+ CAVCGD AACQHYGVRTCEGCK
Sbjct: 190 RATTLAYPQLGLAAGLLQAGEG-GLQTPARTVPAGEGTCAVCGDNAACQHYGVRTCEGCK 248
Query: 65 GFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGR 124
GFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQKCL VGMVKEVVRTDSLKGRRGR
Sbjct: 249 GFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGR 308
Query: 125 LPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 184
LPSKPKSP L+ ++P S++T ++R D
Sbjct: 309 LPSKPKSP---------------------LQQESSQPSPPSPPISMMTA---LVRALTDS 344
Query: 185 IP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH 241
P +S C DQ A E +QQFY+LLT S+++ R
Sbjct: 345 TPRDLDYSRYCSIDQTAAGTDA-------------------EHVQQFYNLLTASIEISRG 385
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSF 301
+A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+ + K +FCNG+VL + QC R F
Sbjct: 386 WAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFVFCNGLVLHRLQCLRGF 445
Query: 302 GDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G +WL++I +F +L + +DI A ACL AL+++
Sbjct: 446 G-EWLDSIKDFSLNLQSLNLDIPALACLSALSMV 478
>gi|426362505|ref|XP_004048402.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Gorilla
gorilla gorilla]
Length = 573
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 239 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 298
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 299 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 337
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 338 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 378
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 379 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 435
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 436 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 490
>gi|327275047|ref|XP_003222285.1| PREDICTED: nuclear receptor subfamily 4 group A member 3-like,
partial [Anolis carolinensis]
Length = 614
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 153/296 (51%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 275 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 334
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP + E
Sbjct: 335 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLQQ------------------------EAS 370
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+ +T ++R +D P +S C +Q SA
Sbjct: 371 QPSPPSPPVTMMNALVRALSDSAPRELDYSRYCSTEQA----SAG--------------- 411
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+ E +QQFY++LT S+D+ R +A+KIPGF+DL KEDQ LL +SA LEL VLRL+ R+
Sbjct: 412 TDAEHVQQFYNILTASIDISRSWAEKIPGFTDLPKEDQTLLIESAFLELLVLRLSIRSDT 471
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 472 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLSLDIPALACLSALSMI 526
>gi|390458196|ref|XP_002743183.2| PREDICTED: nuclear receptor subfamily 4 group A member 3
[Callithrix jacchus]
Length = 968
Score = 293 bits (750), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 154/293 (52%), Positives = 187/293 (63%), Gaps = 41/293 (13%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 634 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 693
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 694 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 732
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
++ V + + +S C DQ A
Sbjct: 733 PPSPPICMMNALVRALTDSTARDLDYSRYCPTDQAAAGTDA------------------- 773
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+ +
Sbjct: 774 EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAED 833
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 834 KFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 885
>gi|359320752|ref|XP_003639411.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 4 group
A member 3 [Canis lupus familiaris]
Length = 999
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 665 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 724
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 725 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 763
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C +Q A
Sbjct: 764 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTEQAAAGTDA---------------- 804
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 805 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 861
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F SL + +DI A ACL AL++I
Sbjct: 862 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLSLQSLNLDIQALACLSALSMI 916
>gi|334333364|ref|XP_003341711.1| PREDICTED: nuclear receptor subfamily 4 group A member 3-like
[Monodelphis domestica]
Length = 782
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/293 (52%), Positives = 189/293 (64%), Gaps = 41/293 (13%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 443 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 502
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 503 CLNVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 541
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
S++ V + + +S C DQ A
Sbjct: 542 PPPPPISVMNALVRALTDSTSRDLDYSRYCSGDQAAAGTDA------------------- 582
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E +QQFY+LLT S+DV R++A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+ +
Sbjct: 583 EHVQQFYNLLTASIDVSRNWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAED 642
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 643 KFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLKSLNLDIPALACLSALSMI 694
>gi|449272865|gb|EMC82579.1| Nuclear receptor subfamily 4 group A member 3 [Columba livia]
Length = 609
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 270 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 329
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 330 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 368
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+++ ++R D P +S C DQ A
Sbjct: 369 PPSPPINMMNA---LVRALTDSTPRELDYSRYCSTDQAAAGTDA---------------- 409
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+D+ R +A+KIPGF DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 410 ---EHVQQFYNLLTASIDITRGWAEKIPGFIDLPKEDQTLLIESAFLELFVLRLSIRSDT 466
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DISA A L ALT+I
Sbjct: 467 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLKSLNLDISALASLSALTMI 521
>gi|449493888|ref|XP_002193091.2| PREDICTED: nuclear receptor subfamily 4 group A member 3
[Taeniopygia guttata]
Length = 610
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 271 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 330
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 331 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 369
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
S++ ++R D P +S C DQ A
Sbjct: 370 PPSPPISMMNA---LVRALTDSTPRELDYSRYCSTDQAAAGTDA---------------- 410
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+D+ R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 411 ---EHVQQFYNLLTASIDITRGWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSDT 467
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A A L ALT+I
Sbjct: 468 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLKSLNLDIPALASLSALTMI 522
>gi|395515403|ref|XP_003761894.1| PREDICTED: nuclear receptor subfamily 4 group A member 3
[Sarcophilus harrisii]
Length = 756
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/293 (52%), Positives = 188/293 (64%), Gaps = 41/293 (13%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 417 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 476
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 477 CLNVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 515
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
S++ V + + +S C DQ A
Sbjct: 516 PPPPPVSVMNALVRALTDSTSRDLDYSRYCSGDQAAAGTDA------------------- 556
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+ +
Sbjct: 557 EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAED 616
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 617 KFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIPALACLSALSMI 668
>gi|297684971|ref|XP_002820080.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 isoform 3
[Pongo abelii]
Length = 626
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 292 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 351
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 352 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 390
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 391 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 431
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 432 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 488
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 489 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 543
>gi|297270523|ref|XP_001109185.2| PREDICTED: nuclear receptor subfamily 4 group A member 3 isoform 1
[Macaca mulatta]
Length = 637
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 303 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 362
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 363 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 401
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 402 PPSPPVCMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 442
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 443 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 499
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 500 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 554
>gi|297270521|ref|XP_002800077.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 isoform 2
[Macaca mulatta]
gi|297270525|ref|XP_002800078.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 isoform 3
[Macaca mulatta]
Length = 626
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 292 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 351
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 352 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 390
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 391 PPSPPVCMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 431
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 432 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 488
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 489 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 543
>gi|363730515|ref|XP_419081.3| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Gallus
gallus]
Length = 609
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 270 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 329
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 330 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 368
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
S++ ++R D P +S C DQ A
Sbjct: 369 PPSPPISMMNA---LVRALTDSTPRELDYSRYCSTDQAAAGTDA---------------- 409
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+D+ R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 410 ---EHVQQFYNLLTASIDISRGWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSDT 466
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A A L ALT+I
Sbjct: 467 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLKSLNLDIPALASLSALTMI 521
>gi|27894355|ref|NP_008912.2| nuclear receptor subfamily 4 group A member 3 isoform a [Homo
sapiens]
gi|90110039|sp|Q92570.3|NR4A3_HUMAN RecName: Full=Nuclear receptor subfamily 4 group A member 3;
AltName: Full=Mitogen-induced nuclear orphan receptor;
AltName: Full=Neuron-derived orphan receptor 1; AltName:
Full=Nuclear hormone receptor NOR-1
gi|60814310|gb|AAX36295.1| nuclear receptor subfamily 4 group A member 3 [synthetic construct]
gi|119579321|gb|EAW58917.1| nuclear receptor subfamily 4, group A, member 3, isoform CRA_c
[Homo sapiens]
gi|119579322|gb|EAW58918.1| nuclear receptor subfamily 4, group A, member 3, isoform CRA_c
[Homo sapiens]
Length = 626
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 292 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 351
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 352 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 390
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 391 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 431
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 432 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 488
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 489 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 543
>gi|301758244|ref|XP_002914990.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 4 group
A member 3-like [Ailuropoda melanoleuca]
Length = 658
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 324 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 383
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 384 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 422
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C +Q A
Sbjct: 423 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTEQAAAGTDA---------------- 463
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 464 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 520
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F SL + +DI A ACL AL+++
Sbjct: 521 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLSLQSLNLDIQALACLSALSMV 575
>gi|168275838|dbj|BAG10639.1| orphan nuclear receptor NR4A3 [synthetic construct]
Length = 626
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 292 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 351
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 352 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 390
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 391 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 431
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 432 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 488
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 489 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 543
>gi|402896847|ref|XP_003911495.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 isoform 1
[Papio anubis]
Length = 626
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 292 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 351
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 352 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 390
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 391 PPSPPVCMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 431
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 432 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 488
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 489 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 543
>gi|332832466|ref|XP_520150.3| PREDICTED: nuclear receptor subfamily 4 group A member 3 isoform 2
[Pan troglodytes]
Length = 637
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 303 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 362
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 363 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 401
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 402 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 442
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 443 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 499
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 500 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 554
>gi|27894361|ref|NP_775292.1| nuclear receptor subfamily 4 group A member 3 isoform b [Homo
sapiens]
gi|119579319|gb|EAW58915.1| nuclear receptor subfamily 4, group A, member 3, isoform CRA_a
[Homo sapiens]
Length = 637
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 303 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 362
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 363 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 401
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 402 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 442
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 443 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 499
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 500 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 554
>gi|402896849|ref|XP_003911496.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 isoform 2
[Papio anubis]
Length = 637
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 303 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 362
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 363 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 401
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 402 PPSPPVCMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 442
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 443 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 499
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 500 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 554
>gi|410042950|ref|XP_003951532.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 isoform 1
[Pan troglodytes]
Length = 626
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 292 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 351
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 352 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 390
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 391 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 431
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 432 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 488
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 489 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 543
>gi|431909857|gb|ELK12959.1| Nuclear receptor subfamily 4 group A member 3 [Pteropus alecto]
Length = 633
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 299 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 358
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 359 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 397
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 398 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 438
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +Q+FY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 439 ---EHVQRFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 495
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F SL + +DI A ACL AL++I
Sbjct: 496 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLSLQSLNLDIQALACLSALSMI 550
>gi|355567588|gb|EHH23929.1| Nuclear hormone receptor NOR-1 [Macaca mulatta]
Length = 524
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 164/302 (54%), Positives = 193/302 (63%), Gaps = 59/302 (19%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 190 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 249
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSP------QESPPSPPVSLITALYREPNPLEP 156
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP Q SPPSPPV ++ AL
Sbjct: 250 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPVCMMNAL--------- 300
Query: 157 PIAEPEKIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPN 213
+R D P +S C DQ A
Sbjct: 301 ---------------------VRALTDSTPRDLDYSRYCPTDQAAAGTDA---------- 329
Query: 214 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL
Sbjct: 330 ---------EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRL 380
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALT 333
+ R+ + K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL+
Sbjct: 381 SIRSNTAEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALS 439
Query: 334 LI 335
+I
Sbjct: 440 MI 441
>gi|355753166|gb|EHH57212.1| Nuclear hormone receptor NOR-1 [Macaca fascicularis]
Length = 506
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 164/302 (54%), Positives = 193/302 (63%), Gaps = 59/302 (19%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 172 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 231
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSP------QESPPSPPVSLITALYREPNPLEP 156
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP Q SPPSPPV ++ AL
Sbjct: 232 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLQQEPSQPSPPSPPVCMMNAL--------- 282
Query: 157 PIAEPEKIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPN 213
+R D P +S C DQ A
Sbjct: 283 ---------------------VRALTDSTPRDLDYSRYCPTDQAAAGTDA---------- 311
Query: 214 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL
Sbjct: 312 ---------EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRL 362
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALT 333
+ R+ + K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL+
Sbjct: 363 SIRSNTAEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALS 421
Query: 334 LI 335
+I
Sbjct: 422 MI 423
>gi|291382905|ref|XP_002708195.1| PREDICTED: nuclear receptor subfamily 4, group A, member 3
[Oryctolagus cuniculus]
Length = 669
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 335 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 394
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 395 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 433
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 434 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 474
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 475 ---EHVQQFYNLLTASIDVSRGWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 531
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 532 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 586
>gi|47229201|emb|CAG03953.1| unnamed protein product [Tetraodon nigroviridis]
Length = 485
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/293 (52%), Positives = 182/293 (62%), Gaps = 55/293 (18%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD A+CQHY VRTCEGCKGFFKRTVQK SKYVCLA+K CPVDKRRRNRCQFCRFQK
Sbjct: 162 CAVCGDNASCQHYRVRTCEGCKGFFKRTVQKNSKYVCLANKDCPVDKRRRNRCQFCRFQK 221
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMV+EVVR DSLKGRRGRLPSKPK+ VS++ +L
Sbjct: 222 CLAVGMVREVVRKDSLKGRRGRLPSKPKA---------VSMMASL--------------- 257
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
+R D P D K Y E E
Sbjct: 258 ---------------VRAHIDSNPSMLDYSK---------------YVETEVRSHQKEEA 287
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
I+QFY LL S++ IR +A +PGFSD C EDQELL +SA +ELF+LRLAYR+ E
Sbjct: 288 SDIKQFYDLLAASMEAIREWAKNVPGFSDFCSEDQELLLESAFVELFILRLAYRSDPETE 347
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+FC G VL K QC R FG DW+++ILEF Q+L M++D+S+F+CL AL +I
Sbjct: 348 KLVFCKGTVLHKTQCVRGFG-DWIDSILEFSQALRRMKLDVSSFSCLAALVII 399
>gi|924282|gb|AAB02581.1| mitogen induced nuclear orphan receptor [Homo sapiens]
Length = 587
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 253 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 312
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 313 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 351
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 352 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 392
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 393 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 449
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 450 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 504
>gi|124504620|gb|AAI28308.1| Nr4a3 protein [Mus musculus]
Length = 625
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 291 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 350
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 351 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 389
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 390 PPSPPICMMNA---LVRALTDATPRDLDYSRYCPTDQATAGTDA---------------- 430
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 431 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 487
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 488 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 542
>gi|1651191|dbj|BAA11419.1| neuron derived orphan receptor [Homo sapiens]
Length = 626
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 155/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 292 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 351
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 352 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 390
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 391 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 431
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A++IPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 432 ---EHVQQFYNLLTASIDVSRSWAERIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 488
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 489 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 543
>gi|7657397|ref|NP_056558.1| nuclear receptor subfamily 4 group A member 3 [Mus musculus]
gi|46577133|sp|Q9QZB6.1|NR4A3_MOUSE RecName: Full=Nuclear receptor subfamily 4 group A member 3;
AltName: Full=Orphan nuclear receptor TEC; AltName:
Full=Translocated in extraskeletal chondrosarcoma
gi|6176564|gb|AAF05622.1|AF191211_1 orphan nuclear receptor TEC long isoform [Mus musculus]
gi|148670400|gb|EDL02347.1| nuclear receptor subfamily 4, group A, member 3 [Mus musculus]
gi|151555221|gb|AAI48437.1| Nuclear receptor subfamily 4, group A, member 3 [synthetic
construct]
gi|162319212|gb|AAI56737.1| Nuclear receptor subfamily 4, group A, member 3 [synthetic
construct]
Length = 627
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 293 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 352
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 353 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 391
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 392 PPSPPICMMNA---LVRALTDATPRDLDYSRYCPTDQATAGTDA---------------- 432
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 433 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 489
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 490 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 544
>gi|124504622|gb|AAI28309.1| Nr4a3 protein [Mus musculus]
Length = 625
Score = 290 bits (743), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 291 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 350
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 351 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 389
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 390 PPSPPICMMNA---LVRALTDATPRDLDYSRYCPTDQATAGTDA---------------- 430
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 431 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 487
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 488 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 542
>gi|13994173|ref|NP_113816.1| nuclear receptor subfamily 4 group A member 3 [Rattus norvegicus]
gi|1709332|sp|P51179.1|NR4A3_RAT RecName: Full=Nuclear receptor subfamily 4 group A member 3;
AltName: Full=Neuron-derived orphan receptor 1/2;
AltName: Full=Nuclear hormone receptor NOR-1/NOR-2
gi|643600|dbj|BAA07535.1| NOR-1 [Rattus norvegicus]
gi|82393809|gb|ABB72200.1| neuron-derived orphan receptor 1 [Rattus norvegicus]
gi|149020211|gb|EDL78200.1| nuclear receptor subfamily 4, group A, member 3, isoform CRA_a
[Rattus norvegicus]
gi|149020212|gb|EDL78201.1| nuclear receptor subfamily 4, group A, member 3, isoform CRA_a
[Rattus norvegicus]
Length = 628
Score = 290 bits (743), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 294 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 353
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 354 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 392
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 393 PPSPPICMMNA---LVRALTDATPRDLDYSRYCPTDQATAGTDA---------------- 433
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 434 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 490
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 491 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 545
>gi|444518684|gb|ELV12319.1| Nuclear receptor subfamily 4 group A member 3 [Tupaia chinensis]
Length = 641
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 307 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 366
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 367 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 405
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 406 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTDQAAAGTDA---------------- 446
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 447 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSST 503
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 504 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 558
>gi|432110709|gb|ELK34186.1| Nuclear receptor subfamily 4 group A member 3 [Myotis davidii]
Length = 560
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 157/296 (53%), Positives = 189/296 (63%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 226 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 285
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 286 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 324
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ A
Sbjct: 325 PPSPPSCMMNA---LVRALTDSTPRELDYSRYCPSDQAAAGTDA---------------- 365
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 366 ---EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 422
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F SL + +DI A ACL AL++I
Sbjct: 423 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLSLQSLNLDIQALACLSALSMI 477
>gi|395823904|ref|XP_003785216.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Otolemur
garnettii]
Length = 631
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 157/296 (53%), Positives = 191/296 (64%), Gaps = 47/296 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 297 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 356
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP L+ ++P
Sbjct: 357 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP---------------------LQQEPSQPS 395
Query: 163 KIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
++ ++R D P +S C DQ SA
Sbjct: 396 PPSPPICMMNA---LVRALTDSTPRDLDYSRYCPTDQ----ASAG--------------- 433
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+ E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+
Sbjct: 434 TDAEHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNT 493
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 494 AEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 548
>gi|426224452|ref|XP_004006384.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 [Ovis
aries]
Length = 598
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 161/323 (49%), Positives = 201/323 (62%), Gaps = 59/323 (18%)
Query: 15 RHSAPLSSA---SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
R AP++SA S +PG R CAVCGD A+CQHYGVRTCEGCKGFFKRTV
Sbjct: 245 RLDAPVTSAKARSGAPGGSEGR---------CAVCGDNASCQHYGVRTCEGCKGFFKRTV 295
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
QK +KY+CLA+K CPVDKRRRNRCQFCRF+ CL + VVRTDSLKGRRGRLPSKPK
Sbjct: 296 QKNAKYICLANKDCPVDKRRRNRCQFCRFRPCLTPALFSVVVRTDSLKGRRGRLPSKPKQ 355
Query: 132 PQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDL 191
P E+ P+ L+T+L +R D P S L
Sbjct: 356 PPETSPA---HLLTSL------------------------------VRAHLDSGPSTSKL 382
Query: 192 CKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 251
FQ +L F +E + +QQFY LL+ S++VIR +A+KIPGF++
Sbjct: 383 DYSK----FQELALPRFGKE---------DAGDVQQFYDLLSGSLEVIRKWAEKIPGFAE 429
Query: 252 LCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILE 311
L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL
Sbjct: 430 LSPGDQDLLLESAFLELFILRLAYRSKPAEGKLIFCSGLVLHRLQCARGFG-DWIDSILA 488
Query: 312 FCQSLHLMEIDISAFACLCALTL 334
F +SLH + +DI AFACL AL L
Sbjct: 489 FSRSLHSLVVDIPAFACLSALFL 511
>gi|118343914|ref|NP_001071779.1| nuclear receptor [Ciona intestinalis]
gi|70570405|dbj|BAE06594.1| nuclear receptor [Ciona intestinalis]
Length = 1054
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 152/303 (50%), Positives = 186/303 (61%), Gaps = 48/303 (15%)
Query: 37 PSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQ 96
PS LCAVCGD AACQHYGVRTCEGCKGFFKRTVQK S YVCLA++ CPVDKRRRNRCQ
Sbjct: 709 PSSEGLCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKKSTYVCLANRNCPVDKRRRNRCQ 768
Query: 97 FCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVS--LITALYREPNPL 154
FCRF+KCL VGMVKEVVRTD LKGRRGRLPSKPK P++ P IT+L R
Sbjct: 769 FCRFEKCLAVGMVKEVVRTDHLKGRRGRLPSKPKGPKDPVAPPSPPVSFITSLVRAHVDT 828
Query: 155 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN- 213
P I+ +D K YR P
Sbjct: 829 NPAISN----------------------------TDTSK---------------YRPPGI 845
Query: 214 -PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
P PP+ ++ FY LL+ VIR +A+KIPGF +LC+EDQ L +++ L++FVLR
Sbjct: 846 APCTPPLRVVDEAINFYELLSACQAVIRQWAEKIPGFCNLCQEDQTNLVENSFLDIFVLR 905
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
LAYR+ ++ KL+FCNG+ L + Q SFG +W+++IL F SL M +DIS+F+CL L
Sbjct: 906 LAYRSEIQEGKLVFCNGLALHRDQLYGSFG-EWIDSILSFACSLADMNVDISSFSCLLGL 964
Query: 333 TLI 335
L
Sbjct: 965 LLF 967
>gi|47060283|gb|AAT09760.1| neural orphan nuclear receptor Nur77 [Danio rerio]
Length = 580
Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 160/320 (50%), Positives = 188/320 (58%), Gaps = 75/320 (23%)
Query: 35 TPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNR 94
+P CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNR
Sbjct: 231 SPTGNEGRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKDCPVDKRRRNR 290
Query: 95 CQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQES-PPSPPVSLITAL------ 147
CQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPK+ Q+S S PV++I +L
Sbjct: 291 CQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPSKPKAVQDSVSVSSPVNIIASLVTAHID 350
Query: 148 ------------YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 195
Y+E P + IQQFY LLT S+DVIR +A IPGFS CKED
Sbjct: 351 SNPASANLDYSKYQESTSGLPEKEDANDIQQFYDLLTGSMDVIRKWAGSIPGFSAFCKED 410
Query: 196 QELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE 255
QELL +SA +ELF +L + I F E
Sbjct: 411 QELLLESAFVELF----------------------ILRLAYRFIYAFMSN--------PE 440
Query: 256 DQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQS 315
+L+F CNGVVL + QC RSFG DW+++I+EF QS
Sbjct: 441 TDKLIF-------------------------CNGVVLHRTQCVRSFG-DWIDSIMEFSQS 474
Query: 316 LHLMEIDISAFACLCALTLI 335
LH + +DISAF+CL L +I
Sbjct: 475 LHRLNLDISAFSCLATLVII 494
>gi|313224753|emb|CBY20544.1| unnamed protein product [Oikopleura dioica]
Length = 625
Score = 273 bits (698), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 142/301 (47%), Positives = 184/301 (61%), Gaps = 44/301 (14%)
Query: 37 PSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQ 96
P+ LCAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CP+DKRRRNRCQ
Sbjct: 239 PNNEGLCAVCGDSAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPIDKRRRNRCQ 298
Query: 97 FCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVS--LITALYREPNPL 154
+CR+QKCL VGMVKEVVRTD+LKGRRGRLPSKPK PQ+ P IT L R
Sbjct: 299 YCRYQKCLAVGMVKEVVRTDNLKGRRGRLPSKPKGPQDPVAPPSPPVSWITHLVRALVDT 358
Query: 155 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNP 214
P ++ + Q+ ++L D EL + LE
Sbjct: 359 SPVLSSTD-FSQYNAML-----------------------DVELPHSGSGLE-------- 386
Query: 215 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
+ + + L S++VIR +A+KIPG+SDL K+D + ++A L+LFV +LA
Sbjct: 387 ---------QARSIHHALLLSLEVIRQWAEKIPGYSDLNKDDGNQILETAFLQLFVAKLA 437
Query: 275 YRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
YR+ + K I C+GV L + Q SF D+W++ I +F +H + +D+SAF+CLC L L
Sbjct: 438 YRSEPNEGKFILCHGVALHRNQLLASF-DNWIDTIHQFSSQVHAVNVDLSAFSCLCGLLL 496
Query: 335 I 335
Sbjct: 497 F 497
>gi|47225453|emb|CAG11936.1| unnamed protein product [Tetraodon nigroviridis]
Length = 650
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 161/330 (48%), Positives = 197/330 (59%), Gaps = 57/330 (17%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFK---------------------------------- 68
CAVCGD AACQHYGVRTCEGCKGFFK
Sbjct: 253 CAVCGDNAACQHYGVRTCEGCKGFFKEANLQPQLGVGRAGESMNTTANAHMIDAHIHEQT 312
Query: 69 -RTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPS 127
RTVQK +KYVCLA K CPVDKRRRNRCQ+CRFQKCL VGMVKEVVRTDSLKGRRGRLPS
Sbjct: 313 RRTVQKNAKYVCLASKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGRLPS 372
Query: 128 KPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 187
KPKSP L E +P PP++ + + YS T + P
Sbjct: 373 KPKSP--------------LQTEASPPSPPLSLLSALLRAYSHSTPRDLDYSQVINFRPP 418
Query: 188 FSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP--EKIQQFYSLLTTSVDVIRHFADK 245
C L F++A+ + + +PP + P E+IQ FY LLT S++ R +AD+
Sbjct: 419 DLRFC-----LGFRAAACICLSPQFSAADPPTSTPDVEQIQLFYRLLTISMETTRCWADR 473
Query: 246 IPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDW 305
+PGFS+L ++DQ LL SA LELFVLRLAYR+ + KL+FCNG+VL + QC R FG +W
Sbjct: 474 LPGFSELQRDDQNLLVDSAFLELFVLRLAYRSMLSEDKLVFCNGLVLHRFQCLRGFG-EW 532
Query: 306 LNAILEFCQSLHLMEIDISAFACLCALTLI 335
L++I +F L + +D SAFACL AL L+
Sbjct: 533 LDSIRDFSTHLQSLNLDASAFACLAALVLL 562
>gi|68132000|gb|AAY85266.1| NOR1 [Danio rerio]
Length = 594
Score = 263 bits (672), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 146/309 (47%), Positives = 189/309 (61%), Gaps = 50/309 (16%)
Query: 32 SRPTPP----SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPV 87
S P+PP S CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA K CPV
Sbjct: 240 SLPSPPNRTSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLASKNCPV 299
Query: 88 DKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL 147
DKRRRNRCQ+CRFQKCL VGMVKEVVRTD+LKGRRGRL
Sbjct: 300 DKRRRNRCQYCRFQKCLSVGMVKEVVRTDNLKGRRGRL---------------------- 337
Query: 148 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
P +P + L+ ++R ++ P +EL + +
Sbjct: 338 -----PSKPKSPLQPEPSPPSPPLSLLNALVRAYSQSTP---------RELDYSQVT--- 380
Query: 208 FYREPNPLEP-PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ +EP ++E ++IQ FY +LT S++V R +A+++PGFS+L +DQ +L SA L
Sbjct: 381 -----DAVEPVGLSESQQIQMFYRVLTGSMEVTRCWAERLPGFSELHHDDQNMLIDSAFL 435
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAF 326
ELFVLRLA R+ D K +FC G+VL + QC R FG +WL++I +F L + +D+ AF
Sbjct: 436 ELFVLRLANRSLLVDEKFVFCTGLVLHRLQCLRGFG-EWLDSIRDFSAHLQELNLDMPAF 494
Query: 327 ACLCALTLI 335
+CLCAL L+
Sbjct: 495 SCLCALVLL 503
>gi|289547504|ref|NP_001166100.1| nuclear receptor subfamily 4, group A, member 3 [Danio rerio]
Length = 594
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/309 (47%), Positives = 189/309 (61%), Gaps = 50/309 (16%)
Query: 32 SRPTPP----SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPV 87
S P+PP S CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA K CPV
Sbjct: 240 SLPSPPNRTSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLASKNCPV 299
Query: 88 DKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL 147
DKRRRNRCQ+CRFQKCL VGMVKEVVRTD+LKGRRGRL
Sbjct: 300 DKRRRNRCQYCRFQKCLSVGMVKEVVRTDNLKGRRGRL---------------------- 337
Query: 148 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
P +P + L+ ++R ++ P +EL + +
Sbjct: 338 -----PSKPKSPLQPEPSPPSPPLSLLNALVRAYSQSTP---------RELDYSQVT--- 380
Query: 208 FYREPNPLEP-PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ +EP ++E ++IQ FY +LT S++V R +A+++PGFS+L +DQ +L SA L
Sbjct: 381 -----DAVEPVGLSESQQIQMFYRVLTGSMEVTRCWAERLPGFSELHHDDQNMLIDSAFL 435
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAF 326
ELFVLRLA R+ D K +FC G+VL + QC R FG +WL++I +F L + +D+ AF
Sbjct: 436 ELFVLRLANRSLLVDEKFVFCTGLVLHRLQCLRGFG-EWLDSIRDFSAHLQELNLDMPAF 494
Query: 327 ACLCALTLI 335
+CLCAL L+
Sbjct: 495 SCLCALVLL 503
>gi|291242825|ref|XP_002741306.1| PREDICTED: nuclear receptor subfamily 4, group A, member 2-like
[Saccoglossus kowalevskii]
Length = 708
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 135/296 (45%), Positives = 183/296 (61%), Gaps = 36/296 (12%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD+A C HYGV CEGCKGFFKRTVQK S+Y+CL ++C VDKRRRN CQ+CRFQK
Sbjct: 360 CAVCGDMAQCFHYGVAACEGCKGFFKRTVQKSSRYLCLEKQSCRVDKRRRNHCQYCRFQK 419
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQE---SPPSPPVSLITALYREPNPLEPPIA 159
CL+VGM+K+VVR D LKGRRGRLPS + + PS P+SLIT L
Sbjct: 420 CLEVGMMKDVVRKDGLKGRRGRLPSTDRRQSHGTINSPSSPISLITQL------------ 467
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+R + D P S L + + ++E ++ + P
Sbjct: 468 ------------------VRAYLDTSPTTSSLDYSQFQEPPKVKTVE--WKTSMLVSKPS 507
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E++ QFY L S +IR +++KIPG++DL ++D++LL Q+A+LE+F+LR+AYR R
Sbjct: 508 DPHERLHQFYDNLCASFHLIRLWSEKIPGWNDLQRQDRDLLLQTATLEVFILRVAYRYRP 567
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
++FCNG V + Q FG +WLN I++FC+ +H M+IDIS FACL LTL+
Sbjct: 568 IKQHVVFCNGKVHHRCQAMLGFG-EWLNYIIDFCEQVHKMDIDISTFACLNVLTLV 622
>gi|443700853|gb|ELT99619.1| hypothetical protein CAPTEDRAFT_167161 [Capitella teleta]
Length = 372
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 170/307 (55%), Positives = 199/307 (64%), Gaps = 63/307 (20%)
Query: 34 PTPPSP-----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
P PP+ S +CAVCGD AACQHYGVRTCEGCKGFFKRTVQKG+KYVCLADK CPVD
Sbjct: 37 PPPPTEHKQKESLMCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKGAKYVCLADKNCPVD 96
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
KRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL
Sbjct: 97 KRRRNRCQFCRFQKCLVVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALV 156
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
R + + TS D +P D K
Sbjct: 157 R-------------------AHVDTSPD--------LPNL-DFSK--------------- 173
Query: 209 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 268
++EP+ E E + FY ++ S+DVI+ +A+KIPGF DLC +D+ELL QSA LE+
Sbjct: 174 FKEPSSEEAGECH-EGLAHFYDVILQSLDVIKSWAEKIPGFLDLCSDDRELLLQSACLEI 232
Query: 269 FVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFAC 328
FVLR+A + VL + QC +FG +W+N+I+EF SL M IDIS+ AC
Sbjct: 233 FVLRVA-------------SSEVLHRLQCLPNFG-EWINSIVEFGLSLQRMTIDISSLAC 278
Query: 329 LCALTLI 335
+ ALTLI
Sbjct: 279 MAALTLI 285
>gi|47060281|gb|AAT09759.1| neural orphan nuclear receptor NOR1 [Danio rerio]
Length = 593
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/309 (46%), Positives = 188/309 (60%), Gaps = 50/309 (16%)
Query: 32 SRPTPP----SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPV 87
S P+PP S + CAVCGD ACQHYG+ TCEGCKGFFKRTVQK +KYVCLA K CPV
Sbjct: 239 SLPSPPNRTSSGERTCAVCGDNTACQHYGIGTCEGCKGFFKRTVQKNAKYVCLASKNCPV 298
Query: 88 DKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL 147
DKRRRNRCQ+CRFQKCL VGMVKEVVRTD+LKGRRGRL
Sbjct: 299 DKRRRNRCQYCRFQKCLSVGMVKEVVRTDNLKGRRGRL---------------------- 336
Query: 148 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
P +P + L+ ++R ++ P +EL + +
Sbjct: 337 -----PSKPKSPLQPEPSPPSPPLSLLNALVRAYSQSTP---------RELDYSQVT--- 379
Query: 208 FYREPNPLEP-PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ +EP ++E ++IQ FY +LT S++V R +A+++PGFS+L +DQ +L SA L
Sbjct: 380 -----DAVEPVGLSESQQIQMFYRVLTGSMEVTRCWAERLPGFSELHHDDQNMLIDSAFL 434
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAF 326
ELFVLRLA R+ D K +FC G+VL + QC R FG +WL++I +F L + +D+ AF
Sbjct: 435 ELFVLRLANRSLLVDEKFVFCTGLVLHRLQCLRGFG-EWLDSIRDFSAHLQELNLDMPAF 493
Query: 327 ACLCALTLI 335
+CLCAL L+
Sbjct: 494 SCLCALVLL 502
>gi|391341672|ref|XP_003745151.1| PREDICTED: probable nuclear hormone receptor HR38-like [Metaseiulus
occidentalis]
Length = 604
Score = 256 bits (655), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 154/357 (43%), Positives = 196/357 (54%), Gaps = 65/357 (18%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASSSPGCDTSRPTP-------PSPSQLCAVCGDIAACQ 53
+ L S++S S LR +A S +S+P +S P + S CAVCGD A CQ
Sbjct: 204 SSLASSTASMSSPLRETATPSRRASTPSPASSISGPIVQQKKKSAGSLPCAVCGDNALCQ 263
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGVRTCEGCKGFFKRTVQ+ KY C+ DK C +DK +RNRCQ+CR++KCL VGM E V
Sbjct: 264 HYGVRTCEGCKGFFKRTVQRKQKYACMTDKKCTIDKEKRNRCQYCRYEKCLAVGMDPEFV 323
Query: 114 RTDSLKGRRGRLPSKPK-------------SPQESPPSPP-VSLITALYREPNPLEPPIA 159
RTD LKGRRGRLPSKPK SP S PSPP +LI L I+
Sbjct: 324 RTDDLKGRRGRLPSKPKLQSHGSQLNISTVSPTISAPSPPPTNLIGQLVHAHQ-----IS 378
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
PE + + T ++H + +P
Sbjct: 379 SPEMSNRDF----TRFQELKHNTEHVP--------------------------------- 401
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR-TR 278
P+++Q+FY LLT+S+ VIR F D IPGF +L ED+ELLF +ASL LF LR+AYR
Sbjct: 402 RTPQEVQEFYELLTSSIVVIRKFVDAIPGFRELLPEDRELLFTTASLGLFALRVAYRMMH 461
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ T++ CN VVL + Q QR FG +WL+ I +SL ID S ACL AL ++
Sbjct: 462 SNHTEITLCNSVVLHRSQAQRGFG-EWLDRISVLSKSLENFAIDESILACLAALFVL 517
>gi|301626790|ref|XP_002942574.1| PREDICTED: nuclear receptor subfamily 4 group A member 3-like,
partial [Xenopus (Silurana) tropicalis]
Length = 517
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/324 (43%), Positives = 182/324 (56%), Gaps = 65/324 (20%)
Query: 30 DTSRPTPP----SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKAC 85
D + P+PP + CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K C
Sbjct: 240 DGNLPSPPIRKTAGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKKAKYVCLANKNC 299
Query: 86 PVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQ------ESPPSP 139
PVDKRRRNRCQ+CRFQKCL VGMVKEVVRTD+LKGRRGRLPSKPKSP + P +
Sbjct: 300 PVDKRRRNRCQYCRFQKCLNVGMVKEVVRTDNLKGRRGRLPSKPKSPNLHETSLQVPSTT 359
Query: 140 PVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL 199
P ++ AL +A+ YS +T+ D
Sbjct: 360 PAGILNALVHA-------LADSTSTDLDYSTYSTTTD----------------------- 389
Query: 200 FQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQEL 259
Q+A E N + E + QFY+LLT S +V + +A K+P FS+L K ++
Sbjct: 390 -QAA-------EGN-------DTESVHQFYNLLTISFEVTKKWAXKVP-FSELHKLQSKI 433
Query: 260 LFQSASLELFVLRLAYRTRAEDTKL--------IFCNGVVLEKQQCQRSFGDDWLNAILE 311
L L + + ++ +E L +FCNG VL + QC R FG +WL+A+
Sbjct: 434 LISDRPLLCALKKQRWQVDSEKIHLSNMAEDEFVFCNGCVLHRIQCLRGFG-EWLDAVQH 492
Query: 312 FCQSLHLMEIDISAFACLCALTLI 335
F +L + +D+S ACL A L
Sbjct: 493 FSLNLQSLNLDVSTVACLSAACLF 516
>gi|410978736|ref|XP_003995744.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Felis
catus]
Length = 568
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/281 (47%), Positives = 167/281 (59%), Gaps = 47/281 (16%)
Query: 58 RTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS 117
R C +RTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQKCL VGMVKEVVRTDS
Sbjct: 249 RLCSMLSAIQERTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDS 308
Query: 118 LKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDV 177
LKGRRGRLPSKPKS PL+ ++P ++ +
Sbjct: 309 LKGRRGRLPSKPKS---------------------PLQQEPSQPSPPSPPICMMNA---L 344
Query: 178 IRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTT 234
+R D P +S C +Q A E +QQFY+LLT
Sbjct: 345 VRALTDSTPRDLDYSRYCPTEQAAAGTDA-------------------EHVQQFYNLLTA 385
Query: 235 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEK 294
S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+ + K +FCNG+VL +
Sbjct: 386 SIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFVFCNGLVLHR 445
Query: 295 QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
QC R FG +WL++I +F SL + +DI A ACL AL++I
Sbjct: 446 LQCLRGFG-EWLDSIKDFSLSLQSLNLDIQALACLSALSMI 485
>gi|326917315|ref|XP_003204945.1| PREDICTED: nuclear receptor subfamily 4 group A member 3-like
[Meleagris gallopavo]
Length = 336
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/280 (49%), Positives = 170/280 (60%), Gaps = 59/280 (21%)
Query: 65 GFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGR 124
F +RTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQKCL VGMVKEVVRTDSLKGRRGR
Sbjct: 19 AFSQRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGR 78
Query: 125 LPSKPKSP------QESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVI 178
LPSKPKSP Q SPPSPP+S++ AL +
Sbjct: 79 LPSKPKSPLQQEPSQPSPPSPPISMMNAL------------------------------V 108
Query: 179 RHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTS 235
R D P +S C DQ + E +QQFY+LLT S
Sbjct: 109 RALTDSTPRELDYSRYCSTDQA-------------------AAGTDAEHVQQFYNLLTAS 149
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQ 295
+D+ R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+ R+ + K +FCNG+VL +
Sbjct: 150 IDISRGWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSDTAEDKFVFCNGLVLHRL 209
Query: 296 QCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
QC R FG +WL++I +F +L + +DI A A L ALT+I
Sbjct: 210 QCLRGFG-EWLDSIKDFSLNLKSLNLDIPALASLSALTMI 248
>gi|432848602|ref|XP_004066427.1| PREDICTED: nuclear receptor subfamily 4 group A member 2-like
[Oryzias latipes]
Length = 483
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/269 (47%), Positives = 163/269 (60%), Gaps = 48/269 (17%)
Query: 67 FKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLP 126
RTVQK +KYVCLA K+CPVDKRRRNRCQ+CRFQKCL VGMVKEVVRTDSLKGRRGRLP
Sbjct: 174 LSRTVQKNAKYVCLATKSCPVDKRRRNRCQYCRFQKCLAVGMVKEVVRTDSLKGRRGRLP 233
Query: 127 SKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP 186
SKPK+P P+ + +LL+ ++R + P
Sbjct: 234 SKPKAP----------------------------PDSCLRGGALLSA---LVRAHVESNP 262
Query: 187 GFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 246
D FQ + P P + + + QFY LLT S++VIR +A +I
Sbjct: 263 SRLDYSN------FQES----------PGSPQRDDAQHVWQFYDLLTRSMEVIRDWAQRI 306
Query: 247 PGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWL 306
PGFS L K DQ+LLF SA LELFVLRLAYR+ E+ KL+FC+G V + QC R FG +W+
Sbjct: 307 PGFSSLPKHDQDLLFYSAFLELFVLRLAYRSNPEEGKLVFCDGSVWHRLQCLRGFG-EWI 365
Query: 307 NAILEFCQSLHLMEIDISAFACLCALTLI 335
++I EF +L M +D+S F+C+C L L+
Sbjct: 366 DSIAEFSANLQRMNLDVSTFSCICTLALV 394
>gi|325495555|gb|ADZ17383.1| nuclear receptor related 1 [Homo sapiens]
Length = 573
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 124/181 (68%), Positives = 141/181 (77%), Gaps = 14/181 (7%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101
LCAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQ
Sbjct: 262 LCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQ 321
Query: 102 KCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNP-LEPPIAE 160
KCL VGMVKEVVRTDSLKGRRGRLPSKPKSPQE + + NP + +
Sbjct: 322 KCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQE-------PSPPSPPFQANPDYQMSGDD 374
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF-----YREPNPL 215
+ IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELF YR NP+
Sbjct: 375 TQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRS-NPV 433
Query: 216 E 216
E
Sbjct: 434 E 434
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 374 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 433
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 434 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 487
>gi|380030909|ref|XP_003699081.1| PREDICTED: probable nuclear hormone receptor HR38-like, partial
[Apis florea]
Length = 266
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 139/224 (62%), Positives = 157/224 (70%), Gaps = 44/224 (19%)
Query: 112 VVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLL 171
VVRTDSLKGRRGRLPSKPKSPQESPPS PVSLITAL
Sbjct: 1 VVRTDSLKGRRGRLPSKPKSPQESPPSSPVSLITAL------------------------ 36
Query: 172 TTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSL 231
+R D P DQ L S YR+P+P +PPI E EK QQFY+L
Sbjct: 37 ------VRAHLDTTP--------DQATLDYSQ-----YRQPSPGDPPITEAEKTQQFYNL 77
Query: 232 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVV 291
LTTS+DVIR FADKIPGF+DL +EDQELLFQSASLELFVLRLAYRT+ EDTKL FCNGVV
Sbjct: 78 LTTSIDVIRTFADKIPGFTDLVREDQELLFQSASLELFVLRLAYRTKPEDTKLTFCNGVV 137
Query: 292 LEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L +QCQRSFG DWL++ILEF ++LH++++D SAFACLCALTLI
Sbjct: 138 LALEQCQRSFG-DWLHSILEFSKALHILDVDASAFACLCALTLI 180
>gi|73476621|gb|AAZ76383.1| nuclear receptor subfamily 4 group A member 2 variant NURR1c
[Rattus norvegicus]
Length = 500
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 143/200 (71%), Gaps = 27/200 (13%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101
LCAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQ
Sbjct: 262 LCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQ 321
Query: 102 KCLQVGMVKEVVRTDSLKGRRGRLPSKP--------------------KSPQESPPSPPV 141
KCL VGMVKEVVRTDSLKGRRGRLPSKP ++ +S P+
Sbjct: 322 KCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQDPSPPSPPVSLISALVRAHVDSNPAM-T 380
Query: 142 SLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ 201
SL + ++ + + + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+
Sbjct: 381 SLDYSRFQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFE 440
Query: 202 SASLELF-----YREPNPLE 216
SA LELF YR NP+E
Sbjct: 441 SAFLELFVLRLAYRS-NPVE 459
>gi|310216|gb|AAA42058.1| nuclear receptor [Rattus norvegicus]
Length = 597
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 118/198 (59%), Positives = 137/198 (69%), Gaps = 24/198 (12%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101
LCAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQ
Sbjct: 262 LCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQ 321
Query: 102 KCLQVGMVKEVVRTDSLKGRRGRLPSK------------------PKSPQESPPSPPVSL 143
KCL VGMVKEVVRTDSLKGRRGRLPSK P+ SL
Sbjct: 322 KCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQDPSPPSPPGSDQCPRQTHVDSNPAMTSL 381
Query: 144 ITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 203
+ ++ + + + IQQFY LLT S+++IR +A+KIPGF+DL K Q+LLF+SA
Sbjct: 382 DYSRFQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKASQDLLFESA 441
Query: 204 SLELF-----YREPNPLE 216
LELF YR NP+E
Sbjct: 442 FLELFVLRLAYRS-NPVE 458
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K Q+LLF+SA LELFVLRLAYR+
Sbjct: 398 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKASQDLLFESAFLELFVLRLAYRSNPV 457
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 458 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 511
>gi|73476625|gb|AAZ76385.1| nuclear receptor subfamily 4 group A member 2 variant NURR1a
[Rattus norvegicus]
Length = 455
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 116/187 (62%), Positives = 137/187 (73%), Gaps = 21/187 (11%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101
LCAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQ
Sbjct: 262 LCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQ 321
Query: 102 KCLQVGMVKEVVRTDSLKGRRGRLPSKP--------------------KSPQESPPSPPV 141
KCL VGMVKEVVRTDSLKGRRGRLPSKP ++ +S P+
Sbjct: 322 KCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQDPSPPSPPVSLISALVRAHVDSNPA-MT 380
Query: 142 SLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ 201
SL + ++ + + + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+
Sbjct: 381 SLDYSRFQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFE 440
Query: 202 SASLELF 208
SA LELF
Sbjct: 441 SAFLELF 447
>gi|2052391|gb|AAC53154.1| steroid/thyroid hormone orphan nuclear receptor [Mus musculus]
Length = 455
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 116/187 (62%), Positives = 137/187 (73%), Gaps = 21/187 (11%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101
LCAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQ
Sbjct: 262 LCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQ 321
Query: 102 KCLQVGMVKEVVRTDSLKGRRGRLPSKP--------------------KSPQESPPSPPV 141
KCL VGMVKEVVRTDSLKGRRGRLPSKP ++ +S P+
Sbjct: 322 KCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQDPSPPSPPVSLISALVRAHVDSNPA-MT 380
Query: 142 SLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ 201
SL + ++ + + + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+
Sbjct: 381 SLDYSRFQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFE 440
Query: 202 SASLELF 208
SA LELF
Sbjct: 441 SAFLELF 447
>gi|73476623|gb|AAZ76384.1| nuclear receptor subfamily 4 group A member 2 variant NURR2c
[Rattus norvegicus]
Length = 437
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 143/200 (71%), Gaps = 27/200 (13%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101
LCAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQ
Sbjct: 199 LCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQ 258
Query: 102 KCLQVGMVKEVVRTDSLKGRRGRLPSKP--------------------KSPQESPPSPPV 141
KCL VGMVKEVVRTDSLKGRRGRLPSKP ++ +S P+
Sbjct: 259 KCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQDPSPPSPPVSLISALVRAHVDSNPAM-T 317
Query: 142 SLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ 201
SL + ++ + + + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+
Sbjct: 318 SLDYSRFQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFE 377
Query: 202 SASLELF-----YREPNPLE 216
SA LELF YR NP+E
Sbjct: 378 SAFLELFVLRLAYRS-NPVE 396
>gi|4514523|dbj|BAA75461.1| Nurr2 [Mus musculus]
gi|148694979|gb|EDL26926.1| nuclear receptor subfamily 4, group A, member 2, isoform CRA_b [Mus
musculus]
Length = 392
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/187 (62%), Positives = 137/187 (73%), Gaps = 21/187 (11%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101
LCAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQ
Sbjct: 199 LCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQ 258
Query: 102 KCLQVGMVKEVVRTDSLKGRRGRLPSKP--------------------KSPQESPPSPPV 141
KCL VGMVKEVVRTDSLKGRRGRLPSKP ++ +S P+
Sbjct: 259 KCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQDPSPPSPPVSLISALVRAHVDSNPA-MT 317
Query: 142 SLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ 201
SL + ++ + + + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+
Sbjct: 318 SLDYSRFQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFE 377
Query: 202 SASLELF 208
SA LELF
Sbjct: 378 SAFLELF 384
>gi|73476631|gb|AAZ76388.1| nuclear receptor subfamily 4 group A member 2 variant NURR2 [Rattus
norvegicus]
Length = 392
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/187 (62%), Positives = 137/187 (73%), Gaps = 21/187 (11%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101
LCAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQ
Sbjct: 199 LCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQ 258
Query: 102 KCLQVGMVKEVVRTDSLKGRRGRLPSKP--------------------KSPQESPPSPPV 141
KCL VGMVKEVVRTDSLKGRRGRLPSKP ++ +S P+
Sbjct: 259 KCLAVGMVKEVVRTDSLKGRRGRLPSKPKSPQDPSPPSPPVSLISALVRAHVDSNPA-MT 317
Query: 142 SLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ 201
SL + ++ + + + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+
Sbjct: 318 SLDYSRFQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFE 377
Query: 202 SASLELF 208
SA LELF
Sbjct: 378 SAFLELF 384
>gi|344249456|gb|EGW05560.1| Nuclear receptor subfamily 4 group A member 1 [Cricetulus griseus]
Length = 924
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 132/293 (45%), Positives = 165/293 (56%), Gaps = 57/293 (19%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD A+CQHYGVRTCEGCKGFFK + S+ VC P F RF
Sbjct: 603 CAVCGDNASCQHYGVRTCEGCKGFFKFPIFYFSEVVCTVWAKDP----------FSRFLY 652
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
L VVRTDSLKGRRGRLPSKPK P P + P +L+T+L
Sbjct: 653 FLPQYCFSAVVRTDSLKGRRGRLPSKPKQP---PDASPTNLLTSL--------------- 694
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
IR D P + L FQ L F +E +
Sbjct: 695 ---------------IRAHLDSGPSTAKLDYSK----FQELVLPRFGKE---------DA 726
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+QQFY LLT S+DVIR +A+KIPGF++L DQ+LL +SA LELF+LRLAYR++ +
Sbjct: 727 SDVQQFYDLLTGSLDVIRKWAEKIPGFAELSPGDQDLLLESAFLELFILRLAYRSKPGEG 786
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+FC+G+VL + QC R FG DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 787 KLVFCSGLVLHRLQCARGFG-DWIDSILAFSRSLHSLAVDVPAFACLSALVLI 838
>gi|410905437|ref|XP_003966198.1| PREDICTED: nuclear receptor subfamily 4 group A member 3-like
[Takifugu rubripes]
Length = 595
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 117/184 (63%), Positives = 137/184 (74%), Gaps = 18/184 (9%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA K CPVDKRRRNRCQ+CRFQK
Sbjct: 259 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLASKNCPVDKRRRNRCQYCRFQK 318
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL--------------- 147
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP ++ SPP ++ L
Sbjct: 319 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLQTEASPPSPPLSLLSGLLRAYSHCTPRDL 378
Query: 148 -YREPNPLEPP--IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 204
Y + + +PP ++ E+IQ FY LLT S++ R +AD++PGFS+L ++DQ LL SA
Sbjct: 379 DYSQFSAADPPTSTSDAEQIQLFYRLLTISMETTRCWADRLPGFSELQRDDQNLLIDSAF 438
Query: 205 LELF 208
LELF
Sbjct: 439 LELF 442
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 93/132 (70%), Gaps = 3/132 (2%)
Query: 206 ELFYREPNPLEPPIA--EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 263
+L Y + + +PP + + E+IQ FY LLT S++ R +AD++PGFS+L ++DQ LL S
Sbjct: 377 DLDYSQFSAADPPTSTSDAEQIQLFYRLLTISMETTRCWADRLPGFSELQRDDQNLLIDS 436
Query: 264 ASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDI 323
A LELFVLRLAYR+ + KL+FCNG+VL + QC R FG +WL++I +F L + +D
Sbjct: 437 AFLELFVLRLAYRSMLAEDKLVFCNGLVLHRFQCLRGFG-EWLDSIRDFSTHLQSLNLDA 495
Query: 324 SAFACLCALTLI 335
SAFACL AL L+
Sbjct: 496 SAFACLAALVLL 507
>gi|354505032|ref|XP_003514576.1| PREDICTED: nuclear receptor subfamily 4 group A member 1
[Cricetulus griseus]
Length = 567
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 126/293 (43%), Positives = 159/293 (54%), Gaps = 80/293 (27%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD A+CQHYGVRTCEGCKGFFK F
Sbjct: 269 CAVCGDNASCQHYGVRTCEGCKGFFKV------------------------------FYH 298
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
L+ G + VRTDSLKGRRGRLPSKPK P P + P +L+T+L
Sbjct: 299 VLKWGWI---VRTDSLKGRRGRLPSKPKQP---PDASPTNLLTSL--------------- 337
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
IR D P + L FQ L F +E +
Sbjct: 338 ---------------IRAHLDSGPSTAKLDYSK----FQELVLPRFGKE---------DA 369
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+QQFY LLT S+DVIR +A+KIPGF++L DQ+LL +SA LELF+LRLAYR++ +
Sbjct: 370 SDVQQFYDLLTGSLDVIRKWAEKIPGFAELSPGDQDLLLESAFLELFILRLAYRSKPGEG 429
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+FC+G+VL + QC R FG DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 430 KLVFCSGLVLHRLQCARGFG-DWIDSILAFSRSLHSLAVDVPAFACLSALVLI 481
>gi|380800707|gb|AFE72229.1| nuclear receptor subfamily 4 group A member 3 isoform a, partial
[Macaca mulatta]
Length = 295
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 127/262 (48%), Positives = 155/262 (59%), Gaps = 59/262 (22%)
Query: 83 KACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSP------QESP 136
K CPVDKRRRNRCQ+CRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSP Q SP
Sbjct: 1 KNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGRLPSKPKSPLQQEPSQPSP 60
Query: 137 PSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP---GFSDLCK 193
PSPPV ++ AL +R D P +S C
Sbjct: 61 PSPPVCMMNAL------------------------------VRALTDSTPRDLDYSRYCP 90
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 253
DQ + E +QQFY+LLT S+DV R +A+KIPGF+DL
Sbjct: 91 TDQA-------------------AAGTDAEHVQQFYNLLTASIDVSRSWAEKIPGFTDLP 131
Query: 254 KEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFC 313
KEDQ LL +SA LELFVLRL+ R+ + K +FCNG+VL + QC R FG +WL++I +F
Sbjct: 132 KEDQTLLIESAFLELFVLRLSIRSNTAEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFS 190
Query: 314 QSLHLMEIDISAFACLCALTLI 335
+L + +DI A ACL AL++I
Sbjct: 191 LNLQSLNLDIQALACLSALSMI 212
>gi|47226349|emb|CAG09317.1| unnamed protein product [Tetraodon nigroviridis]
Length = 636
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 124/235 (52%), Positives = 144/235 (61%), Gaps = 61/235 (25%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101
+CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQFCRFQ
Sbjct: 264 VCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQFCRFQ 323
Query: 102 KCLQVGMVKE------------------------------------VVRTDSLKGRRGRL 125
KCL VGMV+E VVRTDSLKGRRGRL
Sbjct: 324 KCLVVGMVREGKRPVRPSSSLRTADFKLRTVGMWMIYFDLYFFLNRVVRTDSLKGRRGRL 383
Query: 126 PSKPKSPQ------------------ESPPSPPVSLITALYREPNP-LEPPIAEPEKIQQ 166
PSKPKSPQ +P +S + + NP + + IQQ
Sbjct: 384 PSKPKSPQDPSPPSPPVSLISALVRAHVDSNPSMSALDYSRFQANPDYQMAGDNTQHIQQ 443
Query: 167 FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF-----YREPNPLE 216
FY LLT S+++IR +A+KIPGFSDL K+DQ+LLF+SA LE+F YR NP+E
Sbjct: 444 FYDLLTGSMEIIRGWAEKIPGFSDLPKQDQDLLFESAFLEVFVLRLSYRS-NPIE 497
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/113 (61%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+ IQQFY LLT S+++IR +A+KIPGFSDL K+DQ+LLF+SA LE+FVLRL+YR+ +
Sbjct: 439 QHIQQFYDLLTGSMEIIRGWAEKIPGFSDLPKQDQDLLFESAFLEVFVLRLSYRSNPIEG 498
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KLIFCNGVVL + QC R FG +W++AI+EF SL M IDISAF+C+ AL ++
Sbjct: 499 KLIFCNGVVLHRLQCVRGFG-EWVDAIVEFSSSLQSMSIDISAFSCIAALAMV 550
>gi|389614489|dbj|BAM20292.1| hormone receptor like in 38, partial [Papilio xuthus]
Length = 140
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 102/140 (72%), Positives = 116/140 (82%), Gaps = 18/140 (12%)
Query: 68 KRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPS 127
KRTVQKGSKYVCLA+K+CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRRGRLPS
Sbjct: 1 KRTVQKGSKYVCLAEKSCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRRGRLPS 60
Query: 128 KPKSPQESPPSPPVSLITAL------------------YREPNPLEPPIAEPEKIQQFYS 169
KPK PQESPPSPP+SLITAL YREPNP+EPP+++ + IQQFYS
Sbjct: 61 KPKCPQESPPSPPISLITALVRAHVDTSPDFANLDYSQYREPNPMEPPLSDLDVIQQFYS 120
Query: 170 LLTTSVDVIRHFADKIPGFS 189
LLTTS+D+I+ FA+K+PG+
Sbjct: 121 LLTTSIDMIKVFAEKVPGYG 140
>gi|3821745|emb|CAA09764.1| neuron-derived orphan receptor-1 beta [Sus scrofa]
Length = 446
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/110 (80%), Positives = 94/110 (85%), Gaps = 5/110 (4%)
Query: 28 GCDTSRPTPPSPSQ-----LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAD 82
G S P+PP+ S CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+
Sbjct: 289 GESPSLPSPPNRSTASGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLAN 348
Query: 83 KACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSP 132
K CPVDKRRRNRCQ+CRFQKCL VGMVKEVVRTDSLKGRRGRLPSKPKSP
Sbjct: 349 KNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGRLPSKPKSP 398
>gi|332222892|ref|XP_003260605.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Nomascus
leucogenys]
Length = 443
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 83/90 (92%), Positives = 86/90 (95%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 292 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 351
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSP 132
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP
Sbjct: 352 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP 381
>gi|27894359|ref|NP_775291.1| nuclear receptor subfamily 4 group A member 3 isoform c [Homo
sapiens]
gi|1165105|emb|CAA61984.1| nuclear receptor [Homo sapiens]
gi|1586174|prf||2203316A TEC gene
Length = 443
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 83/90 (92%), Positives = 86/90 (95%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 292 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 351
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSP 132
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP
Sbjct: 352 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP 381
>gi|119579320|gb|EAW58916.1| nuclear receptor subfamily 4, group A, member 3, isoform CRA_b
[Homo sapiens]
Length = 454
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 83/90 (92%), Positives = 86/90 (95%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 303 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 362
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSP 132
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP
Sbjct: 363 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP 392
>gi|6176566|gb|AAF05623.1|AF191212_1 orphan nuclear receptor TECdeltaC short isoform [Mus musculus]
Length = 429
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 83/90 (92%), Positives = 86/90 (95%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 293 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 352
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSP 132
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP
Sbjct: 353 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP 382
>gi|149020213|gb|EDL78202.1| nuclear receptor subfamily 4, group A, member 3, isoform CRA_b
[Rattus norvegicus]
Length = 430
Score = 183 bits (465), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 83/90 (92%), Positives = 86/90 (95%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 294 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 353
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSP 132
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP
Sbjct: 354 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP 383
>gi|1065886|emb|CAA59993.1| neuron-derived orphan receptor [Rattus norvegicus]
gi|1583604|prf||2121281A NOR-2 protein
Length = 430
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/90 (92%), Positives = 86/90 (95%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 294 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 353
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSP 132
CL VGMVKEVVRTDSLKGRRGRLPSKPKSP
Sbjct: 354 CLSVGMVKEVVRTDSLKGRRGRLPSKPKSP 383
>gi|33358044|pdb|1PDU|A Chain A, Ligand-Binding Domain Of Drosophila Orphan Nuclear
Receptor Dhr38
gi|33358045|pdb|1PDU|B Chain B, Ligand-Binding Domain Of Drosophila Orphan Nuclear
Receptor Dhr38
Length = 244
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/120 (73%), Positives = 102/120 (85%), Gaps = 1/120 (0%)
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
E ++E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRLAY
Sbjct: 40 EQSMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAY 99
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R R +DTKLIFCNG VL + QC RSFG +WLN I+EF +SLH +EIDISAFACLCALTLI
Sbjct: 100 RARIDDTKLIFCNGTVLHRTQCLRSFG-EWLNDIMEFSRSLHNLEIDISAFACLCALTLI 158
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 57/81 (70%), Gaps = 13/81 (16%)
Query: 141 VSLITALYRE-----PNPL--------EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 187
+SLITAL R P+P E ++E +K+QQFY LLT+SVDVI+ FA+KIPG
Sbjct: 13 ISLITALVRSHVDTTPDPSCLDYSHYEEQSMSEADKVQQFYQLLTSSVDVIKQFAEKIPG 72
Query: 188 FSDLCKEDQELLFQSASLELF 208
+ DL EDQELLFQSASLELF
Sbjct: 73 YFDLLPEDQELLFQSASLELF 93
>gi|339245217|ref|XP_003378534.1| nuclear receptor subfamily 4 group A member 1 [Trichinella
spiralis]
gi|316972548|gb|EFV56221.1| nuclear receptor subfamily 4 group A member 1 [Trichinella
spiralis]
Length = 417
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 89/182 (48%), Positives = 118/182 (64%), Gaps = 7/182 (3%)
Query: 35 TPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNR 94
+P +Q CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVC+ + C +DKRRRNR
Sbjct: 205 SPSQTNQTCAVCGDHAACQHYGVRTCEGCKGFFKRTVQKNAKYVCMGSRDCVIDKRRRNR 264
Query: 95 CQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP------VSLITALY 148
CQ+CRFQKC+ VGMVKEVVR DSLKGRRGRLPS+ K +S + ++ +
Sbjct: 265 CQYCRFQKCMAVGMVKEVVRMDSLKGRRGRLPSRSKVADDSSSTSLTSSLVHAHMVHVIA 324
Query: 149 REPN-PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
+ + P + S L S+ V+ +A+++PG+S L DQ L ++ S+ +
Sbjct: 325 KSSTEAMAPGDFFMNTDESLLSSLNYSLAVVHRWAERLPGWSTLSASDQRQLLKAGSMNV 384
Query: 208 FY 209
+
Sbjct: 385 MH 386
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 238 VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
V+ +A+++PG+S L DQ L ++ S+ + +R+AYR
Sbjct: 354 VVHRWAERLPGWSTLSASDQRQLLKAGSMNVMHIRIAYR 392
>gi|194277579|gb|AAR28090.2| nuclear hormone receptor 4A protein [Schistosoma mansoni]
Length = 827
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 74/90 (82%), Positives = 80/90 (88%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
QLC VCGD AACQHYGVRTCEGCKGFFKRT+QK ++YVCL K C VDKRRRNRCQ+CRF
Sbjct: 246 QLCLVCGDNAACQHYGVRTCEGCKGFFKRTIQKNAQYVCLQAKNCVVDKRRRNRCQYCRF 305
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
QKCL+VGMVKEVVR DSLKGRRGRL SK +
Sbjct: 306 QKCLKVGMVKEVVRRDSLKGRRGRLSSKAR 335
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+F S+L S++ ++H+A+ +PGF +L D+E++ L+L RLA+R E
Sbjct: 469 KFCSILEESMNELKHYAELVPGFMNLSMNDREIMLNLHFLDLLSFRLAWRVAME 522
>gi|256052096|ref|XP_002569614.1| nuclear hormone receptor nor-1/nor-2 [Schistosoma mansoni]
Length = 704
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 74/90 (82%), Positives = 80/90 (88%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
QLC VCGD AACQHYGVRTCEGCKGFFKRT+QK ++YVCL K C VDKRRRNRCQ+CRF
Sbjct: 246 QLCLVCGDNAACQHYGVRTCEGCKGFFKRTIQKNAQYVCLQAKNCVVDKRRRNRCQYCRF 305
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
QKCL+VGMVKEVVR DSLKGRRGRL SK +
Sbjct: 306 QKCLKVGMVKEVVRRDSLKGRRGRLSSKAR 335
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+F S+L S++ ++H+A+ +PGF +L D+E++ L+L RLA+R E
Sbjct: 469 KFCSILEESMNELKHYAELVPGFMNLSMNDREIMLNLHFLDLLSFRLAWRVAME 522
>gi|350646662|emb|CCD58689.1| nuclear hormone receptor nor-1/nor-2, putative [Schistosoma mansoni]
Length = 1550
Score = 169 bits (429), Expect = 1e-39, Method: Composition-based stats.
Identities = 74/90 (82%), Positives = 80/90 (88%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
QLC VCGD AACQHYGVRTCEGCKGFFKRT+QK ++YVCL K C VDKRRRNRCQ+CRF
Sbjct: 969 QLCLVCGDNAACQHYGVRTCEGCKGFFKRTIQKNAQYVCLQAKNCVVDKRRRNRCQYCRF 1028
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
QKCL+VGMVKEVVR DSLKGRRGRL SK +
Sbjct: 1029 QKCLKVGMVKEVVRRDSLKGRRGRLSSKAR 1058
Score = 44.3 bits (103), Expect = 0.072, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+F S+L S++ ++H+A+ +PGF +L D+E++ L+L RLA+R E
Sbjct: 1192 KFCSILEESMNELKHYAELVPGFMNLSMNDREIMLNLHFLDLLSFRLAWRVAME 1245
>gi|4930008|pdb|1CIT|A Chain A, Dna-Binding Mechanism Of The Monomeric Orphan Nuclear
Receptor Ngfi-B
Length = 89
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/87 (90%), Positives = 83/87 (95%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQK
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 62
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKP 129
CL VGMVKEVVRTDSLKGRRGRLPSKP
Sbjct: 63 CLAVGMVKEVVRTDSLKGRRGRLPSKP 89
>gi|358333094|dbj|GAA40423.2| nuclear receptor subfamily 4 group A member 3, partial [Clonorchis
sinensis]
Length = 1180
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 73/91 (80%), Positives = 80/91 (87%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
+Q C VCGD AACQHYGVRTCEGCKGFFKRT+QK ++YVCL K C VDKRRRNRCQ+CR
Sbjct: 859 NQQCLVCGDSAACQHYGVRTCEGCKGFFKRTIQKNAQYVCLQSKNCVVDKRRRNRCQYCR 918
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
FQKCL+VGMVKEVVR DSLKGRRGRL SK +
Sbjct: 919 FQKCLKVGMVKEVVRRDSLKGRRGRLSSKAR 949
>gi|380017459|ref|XP_003692673.1| PREDICTED: uncharacterized protein LOC100871098 [Apis florea]
Length = 490
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/77 (96%), Positives = 75/77 (97%)
Query: 36 PPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRC 95
PPSPSQLCAVCGD AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLA+KACPVDKRRRNRC
Sbjct: 411 PPSPSQLCAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAEKACPVDKRRRNRC 470
Query: 96 QFCRFQKCLQVGMVKEV 112
QFCRFQKCL VGMVKEV
Sbjct: 471 QFCRFQKCLMVGMVKEV 487
>gi|3287495|dbj|BAA31221.1| NOR-1 3'-variant [Homo sapiens]
Length = 143
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/81 (92%), Positives = 78/81 (96%)
Query: 52 CQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKE 111
CQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQKCL VGMVKE
Sbjct: 1 CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKE 60
Query: 112 VVRTDSLKGRRGRLPSKPKSP 132
VVRTDSLKGRRGRLPSKPKSP
Sbjct: 61 VVRTDSLKGRRGRLPSKPKSP 81
>gi|402580387|gb|EJW74337.1| hypothetical protein WUBG_14756, partial [Wuchereria bancrofti]
Length = 209
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/162 (51%), Positives = 103/162 (63%), Gaps = 4/162 (2%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
S +LCAVC D A CQHYG RTCEGCKGFFKRTVQK ++YVC +K C +DKR R+RCQ+
Sbjct: 29 SSDKLCAVCNDRAVCQHYGARTCEGCKGFFKRTVQKKAQYVCTGNKNCTIDKRFRSRCQY 88
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQ----ESPPSPPVSLITALYREPNP 153
CRFQKC+ VGMVKEVVR SL GRRGRLPSK K SPP P ++LI Y E
Sbjct: 89 CRFQKCIAVGMVKEVVRYGSLSGRRGRLPSKTKVQHSDDPPSPPLPLLTLINKAYVESKT 148
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 195
+ P +Q S + + F +KIP +++ + D
Sbjct: 149 IPTPTLYNGGTEQLLSAMDEEFRFMLLFVEKIPNSTEISQND 190
>gi|393908385|gb|EJD75038.1| CBR-NHR-6 protein, partial [Loa loa]
Length = 434
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/188 (47%), Positives = 111/188 (59%), Gaps = 7/188 (3%)
Query: 15 RHSAPLSSASSSPGCDTSRPT---PPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
H A S S P + PT S +LCAVC D A CQHYG RTCEGCKGFFKRTV
Sbjct: 68 NHRANQQSLRSGPSSLQAIPTINESLSTDKLCAVCNDRAVCQHYGARTCEGCKGFFKRTV 127
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
QK ++YVC +K C +DKR R+RCQ+CRFQKC+ VGMVKEVVR SL GRRGRLPSK K
Sbjct: 128 QKKAQYVCTGNKNCTIDKRFRSRCQYCRFQKCIAVGMVKEVVRYGSLSGRRGRLPSKTKV 187
Query: 132 PQ----ESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 187
SPP P ++LI Y E + P ++Q + + F +KIP
Sbjct: 188 QHSDDPPSPPLPLLTLINKAYIESKTIATPTLYNGSMEQLLLAMDEEFHFMLLFVEKIPN 247
Query: 188 FSDLCKED 195
+++ + D
Sbjct: 248 STEISQND 255
>gi|3661543|gb|AAC61752.1| nuclear hormone receptor [Brugia pahangi]
Length = 265
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 129/233 (55%), Gaps = 18/233 (7%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
S +LCAVC D CQHYG RTCEGCKGFFKRTVQK ++YVC +K C +DKR R+RCQ+
Sbjct: 24 SSDKLCAVCNDRTVCQHYGARTCEGCKGFFKRTVQKKAQYVCTGNKNCTIDKRFRSRCQY 83
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQ----ESPPSPPVSLITALYREPNP 153
CRFQKC+ VGMVKEVVR SL GRRGRLPSK K SPP P ++LI Y E
Sbjct: 84 CRFQKCIAVGMVKEVVRYGSLSGRRGRLPSKTKVQHSDDPPSPPLPLLTLINKAYVESKT 143
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL-----FQSASLELF 208
+ P +Q S + + F +KIP +++ + D L F +L+L
Sbjct: 144 IPTPTLYNGGTEQLLSAMDEEFRFMLLFVEKIPNSTEISQNDITKLIECNFFALLALKLC 203
Query: 209 Y--REPNPL-----EPPIAE-PEKIQQFYSLLTTSVDVIRHFADKI-PGFSDL 252
Y E N L E IA P+ ++ ++L+ +H P FS L
Sbjct: 204 YGWTEGNSLHMEQIEVDIAAVPQPLKLLFTLIQEEAKRFQHLIQWDPPSFSAL 256
>gi|156380981|ref|XP_001632045.1| predicted protein [Nematostella vectensis]
gi|156219095|gb|EDO39982.1| predicted protein [Nematostella vectensis]
Length = 357
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 153/310 (49%), Gaps = 51/310 (16%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101
LC VC D A HYGV TCEGCKGFFKRTVQK +Y C ++ C +++ RNRCQ+CRF+
Sbjct: 3 LCVVCNDKATGYHYGVFTCEGCKGFFKRTVQKQLEYTCRGNQDCDINQHTRNRCQYCRFE 62
Query: 102 KCLQVGMVKEVVRTDSLKGRRGRLPS-------KPKSPQESPPSPPVSLITALYREPNPL 154
KC++ GM+K+ VR D G R R S K K ++P P + +++ P
Sbjct: 63 KCVKSGMLKQAVRDDRTPGGRHRHASLQDHRQKKQKLQGKAPKELPQNGLSS------PE 116
Query: 155 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNP 214
P E ++ + + +RH D IP +P
Sbjct: 117 GPDTPEGVVSKEDENEFLIYIQQLRHDVDVIPD-------------------------SP 151
Query: 215 LEPPIAEP------EKIQQF-YSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 267
++PP P +K+ Q+ Y L + + +PGF +L EDQ L +++ ++
Sbjct: 152 VKPPEGSPAAGFSVDKLMQYGYQELYQVI----QWGKNVPGFRELKLEDQITLLKTSFMD 207
Query: 268 LFVLRLAYRTRAED-TKLIFCNGVVLEKQQC-QRSFGDDWLNAILEFCQSLHLMEIDISA 325
L V RLAYR+ D L+F G++L K QC + + D LEFC L + +D++
Sbjct: 208 LNVFRLAYRSICCDPDSLMFAKGIILNKPQCLEMGWSMDLTETTLEFCAKLRNLNMDVNE 267
Query: 326 FACLCALTLI 335
F+CL L L+
Sbjct: 268 FSCLSGLVLL 277
>gi|170584141|ref|XP_001896872.1| nuclear hormone receptor family member nhr-6 [Brugia malayi]
gi|158595764|gb|EDP34278.1| nuclear hormone receptor family member nhr-6, putative [Brugia
malayi]
Length = 440
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 84/162 (51%), Positives = 103/162 (63%), Gaps = 4/162 (2%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
S +LCAVC D A CQHYG RTCEGCKGFFKRTVQK ++YVC +K C +DKR R+RCQ+
Sbjct: 99 SSDKLCAVCNDRAVCQHYGARTCEGCKGFFKRTVQKKAQYVCTGNKNCTIDKRFRSRCQY 158
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQ----ESPPSPPVSLITALYREPNP 153
CRFQKC+ VGMVKEVVR SL GRRGRLPSK K SPP P ++LI Y E
Sbjct: 159 CRFQKCIAVGMVKEVVRYGSLSGRRGRLPSKTKVQHSDDPPSPPLPLLTLINKAYVESKT 218
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 195
+ P +Q S + + F +KIP +++ + D
Sbjct: 219 IPTPTLYNGGTEQLLSAMDEEFRFMLLFVEKIPNSTEISQND 260
>gi|443715958|gb|ELU07684.1| hypothetical protein CAPTEDRAFT_168520 [Capitella teleta]
Length = 356
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 139/299 (46%), Gaps = 55/299 (18%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R+VQK Y C +K C ++K RNRCQ+CR QK
Sbjct: 19 CVVCQDKSSGYHYGVSSCEGCKGFFRRSVQKNMVYTCHKEKICVINKTTRNRCQYCRLQK 78
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQ------ESPPSPPVSLITALYREPNPLEP 156
CL GM KE VR D K R+ + S Q S S + ITA + PL
Sbjct: 79 CLATGMSKEAVRNDRNKKRKTKEEGCSSSTQPQAEELTSEESDLIECITATHEYTFPL-- 136
Query: 157 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
I E EKI+ L ED RE L
Sbjct: 137 -ILEDEKIK-------------------------LSAED------------IAREKVILW 158
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
++E L T+ + I F ++PGF L DQ L +SA LE+ VLRL R
Sbjct: 159 ERVSE---------LSTSGIVRIVDFGKRVPGFQTLSSSDQITLLKSACLEILVLRLGSR 209
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+D + F NG+ L +QQ + + IL F +SL M++D + +A L A+ L+
Sbjct: 210 YHEDDETITFTNGLTLTRQQLEEGGFGTLTDTILRFAKSLQQMQVDTTEYALLSAICLL 268
>gi|16797872|gb|AAL29194.1|AF323681_1 nuclear receptor AmNR2 [Acropora millepora]
Length = 448
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 150/305 (49%), Gaps = 40/305 (13%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D A HYGV TCEGCKGFFKRTVQK +Y C D C V++ RNRCQ+CRF K
Sbjct: 86 CVVCNDKATGYHYGVFTCEGCKGFFKRTVQKQLEYTCKGDGNCEVNQISRNRCQYCRFNK 145
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPS----KPKSPQESPPSPPVS--LITALYREPNPLEP 156
CL GM+KE VR D G R R S +PK P S P + ++ L P
Sbjct: 146 CLAQGMLKEAVREDRTPGGRHRHRSLQDHRPKKPHRSARDEPGTNEVVNGDDCTDKSLAP 205
Query: 157 PIAEP----EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREP 212
A+ E+ F + + +V ++ +IPG S E
Sbjct: 206 RSADAPSSREETMAFIAKIQENVTLV----PEIPGHSLESDE------------------ 243
Query: 213 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
+P + K+ +L T + + +A +PGF DL EDQ L ++ ++L V R
Sbjct: 244 ---KPGSKDVNKLM---ALAYTELQFVIQWAKGVPGFKDLHLEDQVCLLKACFMDLNVFR 297
Query: 273 LAYRTRAED-TKLIFCNGVVLEKQQ-CQRSFGDDWLNAILEFCQSLHLMEIDISAFACLC 330
LAYR+ A D + F +LEK++ + +D ++A LEF L + +D + FACL
Sbjct: 298 LAYRSVACDPMSVRFSQNTILEKEEVVALGWAEDLVDATLEFSDKLRSLNLDQNEFACLS 357
Query: 331 ALTLI 335
AL L+
Sbjct: 358 ALVLL 362
>gi|405952054|gb|EKC19908.1| Nuclear receptor subfamily 4 group A member 3 [Crassostrea gigas]
Length = 356
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/89 (78%), Positives = 75/89 (84%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101
+CAVCGD A CQHYGVRTCEGCKGFFKR+VQK S YVC+ DK C +DK RRNRCQ CRFQ
Sbjct: 261 ICAVCGDSAKCQHYGVRTCEGCKGFFKRSVQKNSNYVCVGDKKCLIDKSRRNRCQSCRFQ 320
Query: 102 KCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
KCL VGM KEVVR+ LKGRRGRLPSK K
Sbjct: 321 KCLTVGMSKEVVRSGQLKGRRGRLPSKTK 349
>gi|344246707|gb|EGW02811.1| Steroid hormone receptor ERR2 [Cricetulus griseus]
Length = 475
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 148/308 (48%), Gaps = 25/308 (8%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 97 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 156
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPP------SPPVSLITALYREPN 152
RF KCL+VGM+KE VR D ++G GR K + E+ P SPP ++Y+
Sbjct: 157 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRLDSENSPYLSLQISPPAK-KPSVYQAAL 213
Query: 153 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREP 212
PL P E + + H G+ LC + L EP
Sbjct: 214 PLTPTFLSLEDLASSWG----------HSGLPSTGWHLLCVLSLVIAVTKIVSYLLVAEP 263
Query: 213 NPL--EPPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ L PP PE + + L D VI +A IPGF +L DQ L QSA +
Sbjct: 264 DKLYAMPPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFLNLSLGDQMSLLQSAWM 323
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAF 326
E+ +L + YR+ D KL++ +++++ + + + AIL+ + ++++
Sbjct: 324 EILILGIVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKRLKVEKEEI 383
Query: 327 ACLCALTL 334
L AL L
Sbjct: 384 VTLKALAL 391
>gi|441612729|ref|XP_004088101.1| PREDICTED: estrogen-related receptor gamma [Nomascus leucogenys]
Length = 470
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 161/349 (46%), Gaps = 53/349 (15%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 76 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 135
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 136 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 195
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 196 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAKKP 238
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+S + ++ H P E Y P+P P ++ + +
Sbjct: 239 LLWSDPADN-KIVSHLLVAEP-------------------EKIYAMPDPTVPD-SDIKAL 277
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 278 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 337
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 338 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 386
>gi|431839148|gb|ELK01075.1| Steroid hormone receptor ERR2 [Pteropus alecto]
Length = 443
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 146/302 (48%), Gaps = 47/302 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P F SL+ ++ + L EP+ L
Sbjct: 206 KKP--CTHFPSLVVAVTKIVSY--------------------------LLVAEPDKLYAM 237
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 238 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 297
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 298 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 357
Query: 333 TL 334
L
Sbjct: 358 AL 359
>gi|40352779|gb|AAH64700.1| ESRRG protein [Homo sapiens]
gi|167773133|gb|ABZ92001.1| estrogen-related receptor gamma [synthetic construct]
gi|190690365|gb|ACE86957.1| estrogen-related receptor gamma protein [synthetic construct]
gi|190691747|gb|ACE87648.1| estrogen-related receptor gamma protein [synthetic construct]
Length = 442
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 161/349 (46%), Gaps = 53/349 (15%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 48 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 107
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 108 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 167
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 168 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAKKP 210
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+S + ++ H P E Y P+P P ++ + +
Sbjct: 211 LLWSDPADN-KIVSHLLVAEP-------------------EKIYAMPDPTVPD-SDIKAL 249
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 250 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 309
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 310 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 358
>gi|343780866|ref|NP_001230447.1| estrogen-related receptor gamma isoform 6 [Homo sapiens]
gi|114572628|ref|XP_001171730.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Pan
troglodytes]
gi|397486156|ref|XP_003814197.1| PREDICTED: estrogen-related receptor gamma isoform 11 [Pan
paniscus]
gi|426333798|ref|XP_004028457.1| PREDICTED: estrogen-related receptor gamma isoform 10 [Gorilla
gorilla gorilla]
Length = 470
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 161/349 (46%), Gaps = 53/349 (15%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 76 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 135
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 136 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 195
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 196 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAKKP 238
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+S + ++ H P E Y P+P P ++ + +
Sbjct: 239 LLWSDPADN-KIVSHLLVAEP-------------------EKIYAMPDPTVPD-SDIKAL 277
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 278 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 337
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 338 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 386
>gi|402857213|ref|XP_003893164.1| PREDICTED: estrogen-related receptor gamma isoform 10 [Papio
anubis]
Length = 470
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 161/349 (46%), Gaps = 53/349 (15%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 76 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 135
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 136 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 195
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 196 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAKKP 238
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+S + ++ H P E Y P+P P ++ + +
Sbjct: 239 LLWSDPADN-KIVSHLLVAEP-------------------EKIYAMPDPTVPD-SDIKAL 277
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 278 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 337
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 338 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 386
>gi|268572989|ref|XP_002641472.1| C. briggsae CBR-NHR-6 protein [Caenorhabditis briggsae]
Length = 576
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/106 (66%), Positives = 79/106 (74%), Gaps = 10/106 (9%)
Query: 35 TPPSP----------SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKA 84
TPP+P ++CAVC D A C HYG RTCEGCKGFFKRTVQK SKY C +K
Sbjct: 207 TPPTPFGIQDEVLDADKMCAVCNDRAVCLHYGARTCEGCKGFFKRTVQKNSKYTCAGNKN 266
Query: 85 CPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
CP+DKR R+RCQ+CRFQKCL+VGMVKE+VR SL GRRGRL SK K
Sbjct: 267 CPIDKRYRSRCQYCRFQKCLEVGMVKEIVRGGSLSGRRGRLSSKTK 312
>gi|109018286|ref|XP_001104646.1| PREDICTED: estrogen-related receptor gamma-like isoform 1 [Macaca
mulatta]
gi|355558765|gb|EHH15545.1| hypothetical protein EGK_01652 [Macaca mulatta]
Length = 470
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 161/349 (46%), Gaps = 53/349 (15%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 76 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 135
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 136 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 195
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 196 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAKKP 238
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+S + ++ H P E Y P+P P ++ + +
Sbjct: 239 LLWSDPADN-KIVSHLLVAEP-------------------EKIYAMPDPTVPD-SDIKAL 277
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 278 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 337
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 338 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 386
>gi|355745913|gb|EHH50538.1| hypothetical protein EGM_01388, partial [Macaca fascicularis]
Length = 453
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 161/349 (46%), Gaps = 53/349 (15%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 59 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 118
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 119 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 178
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 179 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAKKP 221
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+S + ++ H P E Y P+P P ++ + +
Sbjct: 222 LLWSDPADN-KIVSHLLVAEP-------------------EKIYAMPDPTVPD-SDIKAL 260
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 261 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 320
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 321 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 369
>gi|226000901|dbj|BAH36764.1| bisphenol A receptor ERRgamma2 [Homo sapiens]
Length = 435
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 163/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 48 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 107
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 108 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 167
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P +A+P K
Sbjct: 168 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLAQPAK-- 208
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 209 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 242
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 243 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 302
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 303 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 351
>gi|344246039|gb|EGW02143.1| Nuclear receptor subfamily 4 group A member 3 [Cricetulus griseus]
Length = 598
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 128/240 (53%), Gaps = 53/240 (22%)
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
R Q LQV VRTDSLKGRRGRLPSKPKSP L+
Sbjct: 326 RLQGLLQV------VRTDSLKGRRGRLPSKPKSP---------------------LQQEP 358
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIP---GFSDLCKEDQELLFQSASLELFYREPNPL 215
++P ++ ++R D P +S C DQ A
Sbjct: 359 SQPSPPSPPICMMNA---LVRALTDATPRDLDYSRYCPTDQATAGTDA------------ 403
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
E +QQFY+LLT S+DV R +A+KIPGF+DL KEDQ LL +SA LELFVLRL+
Sbjct: 404 -------EHVQQFYNLLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSI 456
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R+ + K +FCNG+VL + QC R FG +WL++I +F +L + +DI A ACL AL++I
Sbjct: 457 RSNTAEDKFVFCNGLVLHRLQCLRGFG-EWLDSIKDFSLNLQSLNLDIQALACLSALSMI 515
>gi|308501635|ref|XP_003113002.1| CRE-NHR-6 protein [Caenorhabditis remanei]
gi|308265303|gb|EFP09256.1| CRE-NHR-6 protein [Caenorhabditis remanei]
Length = 622
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 74/90 (82%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
++CAVC D A C HYG RTCEGCKGFFKRTVQK SKY C +K CP+DKR R+RCQ+CRF
Sbjct: 269 KMCAVCNDRAVCLHYGARTCEGCKGFFKRTVQKNSKYTCAGNKNCPIDKRYRSRCQYCRF 328
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
QKCL+VGMVKE+VR SL GRRGRL SK K
Sbjct: 329 QKCLEVGMVKEIVRHGSLSGRRGRLSSKTK 358
>gi|380799429|gb|AFE71590.1| estrogen-related receptor gamma isoform 2, partial [Macaca mulatta]
Length = 403
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 16 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 75
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 76 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 135
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 136 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 176
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 177 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 210
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 211 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 270
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 271 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 319
>gi|17552670|ref|NP_497731.1| Protein NHR-6, isoform a [Caenorhabditis elegans]
gi|14917017|sp|P41829.3|NHR6_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-6;
AltName: Full=Nuclear receptor subfamily 4 group A
member 5; AltName: Full=Steroid hormone receptor family
member cnr8
gi|4139074|gb|AAD03682.1| nuclear receptor NHR-6 [Caenorhabditis elegans]
gi|6434260|emb|CAA85271.2| Protein NHR-6, isoform a [Caenorhabditis elegans]
gi|28396016|gb|AAO39171.1| nuclear receptor NHR-6 [Caenorhabditis elegans]
Length = 619
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 74/90 (82%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
++CAVC D A C HYG RTCEGCKGFFKRTVQK SKY C +K CP+DKR R+RCQ+CR+
Sbjct: 266 KMCAVCNDRAVCLHYGARTCEGCKGFFKRTVQKNSKYTCAGNKTCPIDKRYRSRCQYCRY 325
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
QKCL+VGMVKE+VR SL GRRGRL SK K
Sbjct: 326 QKCLEVGMVKEIVRHGSLSGRRGRLSSKTK 355
>gi|402876793|ref|XP_003902138.1| PREDICTED: steroid hormone receptor ERR2 isoform 2 [Papio anubis]
Length = 347
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 143/302 (47%), Gaps = 50/302 (16%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 6 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 65
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + ES P P P PL P
Sbjct: 66 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRLDSESSPLHP---------GPFPLFPAF 114
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
P SL+ ++ + L EP+ L
Sbjct: 115 TFP-------SLVVAVTKIVSY--------------------------LLVAEPDKLYAM 141
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 142 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 201
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 202 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 261
Query: 333 TL 334
L
Sbjct: 262 AL 263
>gi|344296432|ref|XP_003419911.1| PREDICTED: estrogen-related receptor gamma-like [Loxodonta
africana]
Length = 466
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 79 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 138
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 139 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 198
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 199 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 239
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 240 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 273
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 274 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 333
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 334 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 382
>gi|197100955|ref|NP_001125696.1| estrogen-related receptor gamma [Pongo abelii]
gi|62286747|sp|Q5RAM2.1|ERR3_PONAB RecName: Full=Estrogen-related receptor gamma; AltName:
Full=Estrogen receptor-related protein 3; AltName:
Full=Nuclear receptor subfamily 3 group B member 3
gi|55728900|emb|CAH91188.1| hypothetical protein [Pongo abelii]
Length = 435
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 48 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 107
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 108 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 167
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 168 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 208
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 209 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 242
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 243 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 302
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 303 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 351
>gi|51476689|emb|CAH18320.1| hypothetical protein [Homo sapiens]
Length = 435
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 48 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 107
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 108 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 167
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 168 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 208
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 209 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 242
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 243 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 302
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 303 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 351
>gi|348573179|ref|XP_003472369.1| PREDICTED: steroid hormone receptor ERR2-like [Cavia porcellus]
Length = 466
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 144/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 132 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 191
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 192 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 238
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 239 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 260
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + ++L VD VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 261 PPAGMPEGDIKALTILCDLVDRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 320
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 321 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 380
Query: 333 TL 334
L
Sbjct: 381 AL 382
>gi|42627865|ref|NP_976081.1| estrogen-related receptor gamma [Rattus norvegicus]
gi|45545427|ref|NP_996317.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|45545429|ref|NP_996318.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|197209821|ref|NP_001127757.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|343780852|ref|NP_001230438.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|343780854|ref|NP_001230439.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|343780856|ref|NP_001230440.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|343780858|ref|NP_001230441.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|343780860|ref|NP_001230442.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|343780862|ref|NP_001230443.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|343780864|ref|NP_001230444.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|343780868|ref|NP_001230448.1| estrogen-related receptor gamma isoform 2 [Homo sapiens]
gi|344925886|ref|NP_001230721.1| estrogen-related receptor gamma isoform 2 [Mus musculus]
gi|114572632|ref|XP_001171746.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Pan
troglodytes]
gi|114572636|ref|XP_001171804.1| PREDICTED: estrogen-related receptor gamma isoform 6 [Pan
troglodytes]
gi|114572638|ref|XP_001171818.1| PREDICTED: estrogen-related receptor gamma isoform 7 [Pan
troglodytes]
gi|114572642|ref|XP_001171845.1| PREDICTED: estrogen-related receptor gamma isoform 9 [Pan
troglodytes]
gi|114572654|ref|XP_001171921.1| PREDICTED: estrogen-related receptor gamma isoform 15 [Pan
troglodytes]
gi|114572660|ref|XP_001171963.1| PREDICTED: estrogen-related receptor gamma isoform 18 [Pan
troglodytes]
gi|114572662|ref|XP_001171976.1| PREDICTED: estrogen-related receptor gamma isoform 19 [Pan
troglodytes]
gi|296230100|ref|XP_002760560.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Callithrix
jacchus]
gi|296230102|ref|XP_002760561.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Callithrix
jacchus]
gi|297461167|ref|XP_002701557.1| PREDICTED: estrogen-related receptor gamma [Bos taurus]
gi|297483948|ref|XP_002693990.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Bos taurus]
gi|332231920|ref|XP_003265145.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Nomascus
leucogenys]
gi|332231922|ref|XP_003265146.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Nomascus
leucogenys]
gi|332231924|ref|XP_003265147.1| PREDICTED: estrogen-related receptor gamma isoform 4 [Nomascus
leucogenys]
gi|332231926|ref|XP_003265148.1| PREDICTED: estrogen-related receptor gamma isoform 5 [Nomascus
leucogenys]
gi|332231928|ref|XP_003265149.1| PREDICTED: estrogen-related receptor gamma isoform 6 [Nomascus
leucogenys]
gi|332231930|ref|XP_003265150.1| PREDICTED: estrogen-related receptor gamma isoform 7 [Nomascus
leucogenys]
gi|332231932|ref|XP_003265151.1| PREDICTED: estrogen-related receptor gamma isoform 8 [Nomascus
leucogenys]
gi|332231934|ref|XP_003265152.1| PREDICTED: estrogen-related receptor gamma isoform 9 [Nomascus
leucogenys]
gi|332811931|ref|XP_003308795.1| PREDICTED: estrogen-related receptor gamma [Pan troglodytes]
gi|345797755|ref|XP_003434352.1| PREDICTED: estrogen-related receptor gamma [Canis lupus familiaris]
gi|358415995|ref|XP_003583267.1| PREDICTED: estrogen-related receptor gamma [Bos taurus]
gi|358415999|ref|XP_003583268.1| PREDICTED: estrogen-related receptor gamma [Bos taurus]
gi|359073867|ref|XP_003587102.1| PREDICTED: estrogen-related receptor gamma [Bos taurus]
gi|359073875|ref|XP_003587103.1| PREDICTED: estrogen-related receptor gamma [Bos taurus]
gi|390477279|ref|XP_003735266.1| PREDICTED: estrogen-related receptor gamma [Callithrix jacchus]
gi|397486138|ref|XP_003814188.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Pan paniscus]
gi|397486140|ref|XP_003814189.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Pan paniscus]
gi|397486142|ref|XP_003814190.1| PREDICTED: estrogen-related receptor gamma isoform 4 [Pan paniscus]
gi|397486144|ref|XP_003814191.1| PREDICTED: estrogen-related receptor gamma isoform 5 [Pan paniscus]
gi|397486146|ref|XP_003814192.1| PREDICTED: estrogen-related receptor gamma isoform 6 [Pan paniscus]
gi|397486148|ref|XP_003814193.1| PREDICTED: estrogen-related receptor gamma isoform 7 [Pan paniscus]
gi|397486150|ref|XP_003814194.1| PREDICTED: estrogen-related receptor gamma isoform 8 [Pan paniscus]
gi|397486152|ref|XP_003814195.1| PREDICTED: estrogen-related receptor gamma isoform 9 [Pan paniscus]
gi|397486154|ref|XP_003814196.1| PREDICTED: estrogen-related receptor gamma isoform 10 [Pan
paniscus]
gi|402857197|ref|XP_003893156.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Papio anubis]
gi|402857199|ref|XP_003893157.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Papio anubis]
gi|402857201|ref|XP_003893158.1| PREDICTED: estrogen-related receptor gamma isoform 4 [Papio anubis]
gi|402857203|ref|XP_003893159.1| PREDICTED: estrogen-related receptor gamma isoform 5 [Papio anubis]
gi|402857205|ref|XP_003893160.1| PREDICTED: estrogen-related receptor gamma isoform 6 [Papio anubis]
gi|402857207|ref|XP_003893161.1| PREDICTED: estrogen-related receptor gamma isoform 7 [Papio anubis]
gi|402857209|ref|XP_003893162.1| PREDICTED: estrogen-related receptor gamma isoform 8 [Papio anubis]
gi|402857211|ref|XP_003893163.1| PREDICTED: estrogen-related receptor gamma isoform 9 [Papio anubis]
gi|403277499|ref|XP_003930396.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Saimiri
boliviensis boliviensis]
gi|403277503|ref|XP_003930398.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Saimiri
boliviensis boliviensis]
gi|403277505|ref|XP_003930399.1| PREDICTED: estrogen-related receptor gamma isoform 4 [Saimiri
boliviensis boliviensis]
gi|410034447|ref|XP_003949741.1| PREDICTED: estrogen-related receptor gamma [Pan troglodytes]
gi|426239469|ref|XP_004013643.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Ovis aries]
gi|426239473|ref|XP_004013645.1| PREDICTED: estrogen-related receptor gamma isoform 4 [Ovis aries]
gi|426333782|ref|XP_004028449.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Gorilla
gorilla gorilla]
gi|426333784|ref|XP_004028450.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Gorilla
gorilla gorilla]
gi|426333786|ref|XP_004028451.1| PREDICTED: estrogen-related receptor gamma isoform 4 [Gorilla
gorilla gorilla]
gi|426333788|ref|XP_004028452.1| PREDICTED: estrogen-related receptor gamma isoform 5 [Gorilla
gorilla gorilla]
gi|426333790|ref|XP_004028453.1| PREDICTED: estrogen-related receptor gamma isoform 6 [Gorilla
gorilla gorilla]
gi|426333792|ref|XP_004028454.1| PREDICTED: estrogen-related receptor gamma isoform 7 [Gorilla
gorilla gorilla]
gi|426333794|ref|XP_004028455.1| PREDICTED: estrogen-related receptor gamma isoform 8 [Gorilla
gorilla gorilla]
gi|426333796|ref|XP_004028456.1| PREDICTED: estrogen-related receptor gamma isoform 9 [Gorilla
gorilla gorilla]
gi|441612726|ref|XP_004088100.1| PREDICTED: estrogen-related receptor gamma [Nomascus leucogenys]
gi|26342927|dbj|BAC35120.1| unnamed protein product [Mus musculus]
gi|37574390|gb|AAQ93377.1| estrogen-related receptor gamma [Homo sapiens]
gi|37574392|gb|AAQ93378.1| estrogen-related receptor gamma [Homo sapiens]
gi|37574394|gb|AAQ93379.1| estrogen-related receptor gamma [Homo sapiens]
gi|37574396|gb|AAQ93380.1| estrogen-related receptor gamma [Homo sapiens]
gi|37574398|gb|AAQ93381.1| estrogen-related receptor gamma [Homo sapiens]
gi|41324140|gb|AAS00098.1| estrogen-related receptor gamma [Homo sapiens]
gi|41688062|dbj|BAD08617.1| estrogen receptor-related receptor gamma-2 [Rattus norvegicus]
gi|148681094|gb|EDL13041.1| estrogen-related receptor gamma, isoform CRA_b [Mus musculus]
gi|149040986|gb|EDL94943.1| estrogen-related receptor gamma, isoform CRA_a [Rattus norvegicus]
gi|158255326|dbj|BAF83634.1| unnamed protein product [Homo sapiens]
gi|158255492|dbj|BAF83717.1| unnamed protein product [Homo sapiens]
gi|296479334|tpg|DAA21449.1| TPA: estrogen-related receptor gamma-like isoform 2 [Bos taurus]
gi|325495519|gb|ADZ17365.1| estrogen-related nuclear receptor gamma variant 2 [Homo sapiens]
gi|344236449|gb|EGV92552.1| Estrogen-related receptor gamma [Cricetulus griseus]
Length = 435
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 48 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 107
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 108 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 167
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 168 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 208
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 209 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 242
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 243 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 302
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 303 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 351
>gi|354465166|ref|XP_003495051.1| PREDICTED: estrogen-related receptor gamma-like [Cricetulus
griseus]
Length = 460
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 73 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 132
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 133 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 192
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 193 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 233
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 234 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 267
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 268 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 327
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 328 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 376
>gi|216409738|dbj|BAH02306.1| estrogen-related receptor gamma [Homo sapiens]
Length = 436
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 158/349 (45%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 48 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 107
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 108 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 167
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 168 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 208
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
++ H P E Y P+P P ++ + +
Sbjct: 209 ------KPYTKIVSHLLVAEP-------------------EKIYAMPDPTVPD-SDIKAL 242
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 243 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 302
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 303 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 351
>gi|410986501|ref|XP_003999548.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Felis catus]
Length = 435
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 48 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 107
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 108 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 167
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 168 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 208
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 209 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 242
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 243 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 302
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 303 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 351
>gi|109018278|ref|XP_001105251.1| PREDICTED: estrogen-related receptor gamma-like isoform 8 [Macaca
mulatta]
Length = 458
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 71 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 130
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 131 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 190
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 191 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 231
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 232 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 265
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 266 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 325
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 326 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 374
>gi|281344396|gb|EFB19980.1| hypothetical protein PANDA_014989 [Ailuropoda melanoleuca]
Length = 451
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 64 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 123
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 124 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 183
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 184 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 224
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 225 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 258
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 259 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 318
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 319 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 367
>gi|417410730|gb|JAA51831.1| Putative estrogen-related receptor gamma, partial [Desmodus
rotundus]
Length = 441
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 54 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 113
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 114 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 173
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 174 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 214
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 215 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 248
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 249 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 308
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 309 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 357
>gi|37574388|gb|AAQ93376.1| estrogen-related receptor gamma [Homo sapiens]
Length = 458
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 71 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 130
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 131 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 190
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 191 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 231
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 232 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 265
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 266 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 325
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 326 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 374
>gi|410986503|ref|XP_003999549.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Felis catus]
Length = 441
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 54 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 113
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 114 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 173
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 174 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 214
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 215 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 248
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 249 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 308
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 309 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 357
>gi|74006022|ref|XP_858551.1| PREDICTED: estrogen-related receptor gamma isoform 6 [Canis lupus
familiaris]
gi|291402394|ref|XP_002717555.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Oryctolagus
cuniculus]
gi|297461169|ref|XP_002701558.1| PREDICTED: estrogen-related receptor gamma [Bos taurus]
gi|297483950|ref|XP_002693991.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Bos taurus]
gi|426239471|ref|XP_004013644.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Ovis aries]
gi|296479335|tpg|DAA21450.1| TPA: estrogen-related receptor gamma-like isoform 3 [Bos taurus]
Length = 441
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 54 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 113
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 114 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 173
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 174 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 214
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 215 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 248
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 249 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 308
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 309 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 357
>gi|410986499|ref|XP_003999547.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Felis catus]
Length = 458
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 71 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 130
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 131 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 190
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 191 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 231
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 232 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 265
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 266 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 325
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 326 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 374
>gi|6753774|ref|NP_036065.1| estrogen-related receptor gamma isoform1 [Mus musculus]
gi|45545433|ref|NP_001429.2| estrogen-related receptor gamma isoform 1 [Homo sapiens]
gi|74006012|ref|XP_849276.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Canis lupus
familiaris]
gi|76636896|ref|XP_871260.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Bos taurus]
gi|114572622|ref|XP_514199.2| PREDICTED: estrogen-related receptor gamma isoform 22 [Pan
troglodytes]
gi|149743802|ref|XP_001489611.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Equus
caballus]
gi|291402392|ref|XP_002717554.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Oryctolagus
cuniculus]
gi|296230098|ref|XP_002760559.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Callithrix
jacchus]
gi|297483946|ref|XP_002693989.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Bos taurus]
gi|332231918|ref|XP_003265144.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Nomascus
leucogenys]
gi|397486136|ref|XP_003814187.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Pan paniscus]
gi|402857195|ref|XP_003893155.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Papio anubis]
gi|403277501|ref|XP_003930397.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Saimiri
boliviensis boliviensis]
gi|426239467|ref|XP_004013642.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Ovis aries]
gi|426333780|ref|XP_004028448.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Gorilla
gorilla gorilla]
gi|50400205|sp|P62510.1|ERR3_RAT RecName: Full=Estrogen-related receptor gamma; AltName:
Full=Estrogen receptor-related protein 3; AltName:
Full=Nuclear receptor subfamily 3 group B member 3
gi|50402102|sp|P62508.1|ERR3_HUMAN RecName: Full=Estrogen-related receptor gamma; AltName: Full=ERR
gamma-2; AltName: Full=Estrogen receptor-related protein
3; AltName: Full=Nuclear receptor subfamily 3 group B
member 3
gi|50402103|sp|P62509.1|ERR3_MOUSE RecName: Full=Estrogen-related receptor gamma; AltName:
Full=Estrogen receptor-related protein 3; AltName:
Full=Nuclear receptor subfamily 3 group B member 3
gi|5726228|gb|AAD48369.1|AF117254_1 estrogen receptor related protein 3 [Mus musculus]
gi|4092075|gb|AAC99410.1| nuclear receptor ERRG2 [Homo sapiens]
gi|41688060|dbj|BAD08616.1| estrogen receptor-related receptor gamma-1 [Rattus norvegicus]
gi|51895995|gb|AAH82324.1| Estrogen-related receptor gamma [Mus musculus]
gi|119613741|gb|EAW93335.1| estrogen-related receptor gamma [Homo sapiens]
gi|148681093|gb|EDL13040.1| estrogen-related receptor gamma, isoform CRA_a [Mus musculus]
gi|149040987|gb|EDL94944.1| estrogen-related receptor gamma, isoform CRA_b [Rattus norvegicus]
gi|158256726|dbj|BAF84336.1| unnamed protein product [Homo sapiens]
gi|168267608|dbj|BAG09860.1| estrogen-related receptor gamma [synthetic construct]
gi|296479333|tpg|DAA21448.1| TPA: estrogen-related receptor gamma-like isoform 1 [Bos taurus]
gi|325495517|gb|ADZ17364.1| estrogen-related nuclear receptor gamma variant 1 [Homo sapiens]
Length = 458
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 71 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 130
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 131 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 190
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 191 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 231
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 232 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 265
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 266 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 325
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 326 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 374
>gi|417401691|gb|JAA47721.1| Putative estrogen-related receptor gamma [Desmodus rotundus]
Length = 480
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 93 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 152
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 153 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 212
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 213 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 253
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 254 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 287
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 288 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 347
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 348 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 396
>gi|348577023|ref|XP_003474284.1| PREDICTED: estrogen-related receptor gamma-like [Cavia porcellus]
Length = 456
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L +APL S C ++ P P +LC V
Sbjct: 69 TMNGHQNGLDSPPLYPAAPLLGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 128
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 129 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 188
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 189 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 229
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 230 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 263
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 264 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 323
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 324 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 372
>gi|212645753|ref|NP_001129836.1| Protein NHR-6, isoform b [Caenorhabditis elegans]
gi|186929576|emb|CAQ48391.1| Protein NHR-6, isoform b [Caenorhabditis elegans]
Length = 483
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 74/90 (82%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
++CAVC D A C HYG RTCEGCKGFFKRTVQK SKY C +K CP+DKR R+RCQ+CR+
Sbjct: 130 KMCAVCNDRAVCLHYGARTCEGCKGFFKRTVQKNSKYTCAGNKTCPIDKRYRSRCQYCRY 189
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
QKCL+VGMVKE+VR SL GRRGRL SK K
Sbjct: 190 QKCLEVGMVKEIVRHGSLSGRRGRLSSKTK 219
>gi|301780106|ref|XP_002925470.1| PREDICTED: estrogen-related receptor gamma-like [Ailuropoda
melanoleuca]
Length = 500
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 113 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 172
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 173 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 232
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 233 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 273
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 274 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 307
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 308 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 367
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 368 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 416
>gi|40788377|dbj|BAA74855.2| KIAA0832 protein [Homo sapiens]
Length = 469
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 82 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 141
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 142 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 201
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 202 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 242
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 243 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 276
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 277 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 336
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 337 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 385
>gi|312098588|ref|XP_003149103.1| hypothetical protein LOAG_13549 [Loa loa]
Length = 245
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/118 (63%), Positives = 84/118 (71%), Gaps = 3/118 (2%)
Query: 16 HSAPLSSASSSPGCDTSRPT---PPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQ 72
H A S S P + PT S +LCAVC D A CQHYG RTCEGCKGFFKRTVQ
Sbjct: 90 HRANQQSLRSGPSSLQAIPTINESLSTDKLCAVCNDRAVCQHYGARTCEGCKGFFKRTVQ 149
Query: 73 KGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
K ++YVC +K C +DKR R+RCQ+CRFQKC+ VGMVKEVVR SL GRRGRLPSK K
Sbjct: 150 KKAQYVCTGNKNCTIDKRFRSRCQYCRFQKCIAVGMVKEVVRYGSLSGRRGRLPSKTK 207
>gi|52843268|gb|AAU88063.1| estrogen receptor-related receptor short isoform [Branchiostoma
floridae]
Length = 455
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 143/297 (48%), Gaps = 43/297 (14%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 104 PKRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 163
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K ++ PS V AL + P P+
Sbjct: 164 RFTKCLKVGMLKEGVRLDRVRGGR----QKYKRKIDADPSSYVQQAPALKK---PSNGPV 216
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 217 NK----------------IVAHLMVAEP-------------------EKLYAMPDPTTPD 241
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+E + + L + VI +A IPGFS+L DQ L QS +E+ +L LA+R+
Sbjct: 242 -SELKTLTTLCDLADRELVVIIGWAKHIPGFSNLSLSDQMSLLQSGWMEILILGLAFRSL 300
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
D++L+F +++++Q + + ++ IL L + ++ F L A+ L+
Sbjct: 301 HYDSRLVFAEDYIIDEEQSRAAGLEELSRHILRLVGRLKALGVEKEEFVVLKAMALL 357
>gi|10197969|gb|AAG15119.1| nuclear receptor NHR-6 [Caenorhabditis elegans]
Length = 469
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 74/90 (82%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
++CAVC D A C HYG RTCEGCKGFFKRTVQK SKY C +K CP+DKR R+RCQ+CR+
Sbjct: 116 KMCAVCNDRAVCLHYGARTCEGCKGFFKRTVQKNSKYTCAGNKTCPIDKRYRSRCQYCRY 175
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
QKCL+VGMVKE+VR SL GRRGRL SK K
Sbjct: 176 QKCLEVGMVKEIVRHGSLSGRRGRLSSKTK 205
>gi|345329478|ref|XP_003431382.1| PREDICTED: estrogen-related receptor gamma-like isoform 2
[Ornithorhynchus anatinus]
Length = 345
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 145/296 (48%), Gaps = 40/296 (13%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 6 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 65
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + E+ P Y P ++P
Sbjct: 66 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRIDAENSP----------YLNPQLVQPA- 112
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+P K ++ ++ H P E Y P+P P
Sbjct: 113 KKPCKYMKYNK-------IVSHLLVAEP-------------------EKIYAMPDPTVPD 146
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + VI +A IPGFS L DQ L QSA +E+ +L + YR+
Sbjct: 147 -SDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSL 205
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +L++ ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 206 SFEDELVYAEDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 261
>gi|395855482|ref|XP_003800188.1| PREDICTED: estrogen-related receptor gamma isoform 2 [Otolemur
garnettii]
gi|395855484|ref|XP_003800189.1| PREDICTED: estrogen-related receptor gamma isoform 3 [Otolemur
garnettii]
Length = 435
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L +AP+ S C ++ P P +LC V
Sbjct: 48 TMNGHQNGLDSPPLYPTAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 107
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 108 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 167
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 168 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 208
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 209 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 242
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 243 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 302
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 303 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 351
>gi|260807357|ref|XP_002598475.1| hypothetical protein BRAFLDRAFT_116859 [Branchiostoma floridae]
gi|21310107|gb|AAM46149.1|AF378827_1 retinoic acid receptor [Branchiostoma floridae]
gi|229283748|gb|EEN54487.1| hypothetical protein BRAFLDRAFT_116859 [Branchiostoma floridae]
Length = 415
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 133/294 (45%), Gaps = 45/294 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK +YVC DK C ++K RNRCQFCR +K
Sbjct: 79 CFVCSDKSSGYHYGVASCEGCKGFFRRSIQKNMQYVCHRDKNCVINKVTRNRCQFCRLKK 138
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C VGM KE VR D K R+ + S K +P + I RE
Sbjct: 139 CFDVGMSKESVRNDRNKKRKDKTQSLEKHTLSYNWTPEIQTIITTVREA----------- 187
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI-AE 221
H A +P L K Y+ N E +
Sbjct: 188 -----------------HMA-TLPDMGKLPK---------------YKVKNAAEQRGPTD 214
Query: 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
E Q F L T ++ I FA K+PGF+ DQ L ++A L++ +LRLA R E
Sbjct: 215 IELWQHFSDLCTETIIKIVQFAKKVPGFTTFGTADQITLLKAACLDILILRLATRLDKES 274
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F NG++L + Q + + + F + + + D + +C++ L+
Sbjct: 275 DTVTFINGMMLSRTQMHNAGFGPLTDGVFTFAEGMQKLLFDETEIGLMCSICLV 328
>gi|538373|gb|AAA96984.1| steroid hormone receptor family member CNR8 [Caenorhabditis
elegans]
Length = 463
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 74/90 (82%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
++CAVC D A C HYG RTCEGCKGFFKRTVQK SKY C +K CP+DKR R+RCQ+CR+
Sbjct: 110 KMCAVCNDRAVCLHYGARTCEGCKGFFKRTVQKNSKYTCAGNKTCPIDKRYRSRCQYCRY 169
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
QKCL+VGMVKE+VR SL GRRGRL SK K
Sbjct: 170 QKCLEVGMVKEIVRHGSLSGRRGRLSSKTK 199
>gi|405965497|gb|EKC30866.1| Retinoic acid receptor beta [Crassostrea gigas]
Length = 501
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 140/293 (47%), Gaps = 31/293 (10%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R+VQK +Y C DK CP++K RNRCQ+CR QK
Sbjct: 112 CVVCSDKSSGYHYGVSSCEGCKGFFRRSVQKNMQYTCHKDKNCPINKVTRNRCQYCRLQK 171
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C GM KE VR D K ++ +L + P S E S++ + P I E
Sbjct: 172 CYATGMSKEAVRNDRNKKKKPKLEN-PSSNIEEVTEDEQSVLQEILEAHRVTFPQIEEA- 229
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
+ S T D+ A K K+++ +L+ +
Sbjct: 230 -VLSPMSCHDTRGDIENDEASKENSNQ---KKEKSMLWDKVT------------------ 267
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
L + + I FA K+PGF+ L DQ L ++A LE+ +LRL R +
Sbjct: 268 -------ELSSKGIIKIVEFAKKMPGFTSLSTSDQITLLKAACLEIMILRLCSRYDLDKD 320
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
++F G+ L+++Q Q+ + I F SL ++ ID +A L A+ LI
Sbjct: 321 VMLFNGGLSLDREQLQKGGFGTLTDTIFRFASSLKVLNIDEMEYAVLSAICLI 373
>gi|37222638|gb|AAQ90023.1| estrogen receptor-related receptor gamma [Rattus norvegicus]
Length = 458
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 161/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 71 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 130
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 131 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 190
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 191 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 231
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 232 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 265
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 266 TTLCDLADREWVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 325
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 326 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 374
>gi|395855480|ref|XP_003800187.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Otolemur
garnettii]
Length = 458
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 162/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L +AP+ S C ++ P P +LC V
Sbjct: 71 TMNGHQNGLDSPPLYPTAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 130
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 131 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 190
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 191 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 231
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 232 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 265
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 266 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 325
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 326 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 374
>gi|341897373|gb|EGT53308.1| hypothetical protein CAEBREN_30153 [Caenorhabditis brenneri]
Length = 663
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 73/90 (81%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LCAVC D A C HYG RTCEGCKGFFKRTVQK SKY C ++ CP+DKR R+RCQFCRF
Sbjct: 311 KLCAVCSDRAVCLHYGARTCEGCKGFFKRTVQKQSKYTCAGNQNCPIDKRYRSRCQFCRF 370
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
QKCL VGMVKE+VR SL GRRGRL SK K
Sbjct: 371 QKCLDVGMVKEIVRHGSLSGRRGRLSSKTK 400
>gi|351701880|gb|EHB04799.1| Steroid hormone receptor ERR2 [Heterocephalus glaber]
Length = 433
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 143/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P KI + L EP+ L
Sbjct: 206 KKP--------------------MTKIVSY------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L VD VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 228 PPAGMPEGDIKALTTLCDLVDRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|334322082|ref|XP_001375146.2| PREDICTED: estrogen-related receptor gamma-like [Monodelphis
domestica]
Length = 479
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 142/298 (47%), Gaps = 49/298 (16%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 145 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 204
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP- 157
RF KCL+VGM+KE VR D ++G GR K + E+ P L+ + N +
Sbjct: 205 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHL 262
Query: 158 -IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
+AEPEKI Y P+P
Sbjct: 263 LVAEPEKI--------------------------------------------YAMPDPTV 278
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
P ++ + + L + VI +A IPGFS L DQ L QSA +E+ +L + YR
Sbjct: 279 PD-SDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYR 337
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + + +L++ ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 338 SLSFEDELVYAEDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 395
>gi|449272001|gb|EMC82132.1| Estrogen-related receptor gamma, partial [Columba livia]
Length = 442
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 142/298 (47%), Gaps = 49/298 (16%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 108 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 167
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP- 157
RF KCL+VGM+KE VR D ++G GR K + E+ P L+ + N +
Sbjct: 168 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHL 225
Query: 158 -IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
+AEPEKI Y P+P
Sbjct: 226 LVAEPEKI--------------------------------------------YAMPDPTV 241
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
P ++ + + L + VI +A IPGFS L DQ L QSA +E+ +L + YR
Sbjct: 242 PD-SDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYR 300
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + + +L++ ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 301 SLSFEDELVYAEDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 358
>gi|52843266|gb|AAU88062.1| estrogen receptor-related receptor long isoform [Branchiostoma
floridae]
Length = 496
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 149/303 (49%), Gaps = 14/303 (4%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 104 PKRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 163
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K ++ PS V AL + N
Sbjct: 164 RFTKCLKVGMLKEGVRLDRVRGGR----QKYKRKIDADPSSYVQQAPALKKPSNGPGRTR 219
Query: 159 AEPEKIQQFYSLLTTSVDVIRHF------ADKIPGFSDLCKEDQELLFQSASLELFYREP 212
+ + + L R + K G + K L+ A E Y P
Sbjct: 220 HVHNSVPKKFVLAGGGTKTKRQVVTCPTNSHKQHG-RKVNKIVAHLMV--AEPEKLYAMP 276
Query: 213 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
+P P +E + + L + VI +A IPGFS+L DQ L QS +E+ +L
Sbjct: 277 DPTTPD-SELKTLTTLCDLADRELVVIIGWAKHIPGFSNLSLSDQMSLLQSGWMEILILG 335
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
LA+R+ D++L+F +++++Q + + ++ IL L + ++ F L A+
Sbjct: 336 LAFRSLHYDSRLVFAEDYIIDEEQSRAAGLEELSRHILRLVGRLKALGVEKEEFVVLKAM 395
Query: 333 TLI 335
L+
Sbjct: 396 ALL 398
>gi|55741600|ref|NP_001007082.1| estrogen-related receptor gamma [Gallus gallus]
gi|449495784|ref|XP_002191124.2| PREDICTED: estrogen-related receptor gamma [Taeniopygia guttata]
gi|54399978|gb|AAV34214.1| nuclear receptor subfamily 3 group B member 3 [Gallus gallus]
Length = 435
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 142/298 (47%), Gaps = 49/298 (16%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 101 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 160
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP- 157
RF KCL+VGM+KE VR D ++G GR K + E+ P L+ + N +
Sbjct: 161 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHL 218
Query: 158 -IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
+AEPEKI Y P+P
Sbjct: 219 LVAEPEKI--------------------------------------------YAMPDPTV 234
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
P ++ + + L + VI +A IPGFS L DQ L QSA +E+ +L + YR
Sbjct: 235 PD-SDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYR 293
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + + +L++ ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 294 SLSFEDELVYAEDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 351
>gi|302129672|ref|NP_001098389.2| estrogen-related receptor gamma type 1 [Oryzias latipes]
gi|302125469|gb|ABQ24188.2| estrogen-related receptor gamma type 1 [Oryzias latipes]
Length = 445
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 143/296 (48%), Gaps = 38/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 104 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 163
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL VGM++E VR D ++G GR K + ++ P L P +
Sbjct: 164 RFMKCLTVGMLREGVRLDRVRG--GRQKYKRRIDADNSPY---------------LNPQL 206
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A P K + L + ++ H P E Y P+P P
Sbjct: 207 ALPPKKPFAFGCLADN-KIVSHLLVAEP-------------------EKIYAMPDPTVPD 246
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + V +A IPGFS L DQ L QSA +E+ +LR+ YR+
Sbjct: 247 -SDIKALTTLCDLADRELVVNIGWAKHIPGFSTLSLADQMSLLQSAWMEILILRVVYRSL 305
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + KL++ ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 306 SFEDKLVYAEDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 361
>gi|410912218|ref|XP_003969587.1| PREDICTED: estrogen-related receptor gamma-like [Takifugu rubripes]
Length = 475
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 143/296 (48%), Gaps = 38/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 134 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 193
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL VGM++E VR D ++G GR K + ++ P L P +
Sbjct: 194 RFMKCLTVGMLREGVRLDRVRG--GRQKYKRRIDADNSPY---------------LNPQL 236
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A P K + L + ++ H P E Y P+P P
Sbjct: 237 ALPAKKPFAFGCLADN-KIVSHLLVAEP-------------------EKIYAMPDPTVPD 276
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + V +A IPGFS L DQ L QSA +E+ +LR+ YR+
Sbjct: 277 -SDIKALTTLCDLADRELVVNIGWAKHIPGFSTLSLADQMSLLQSAWMEILILRVVYRSL 335
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + KL++ ++++ Q + + D N+IL+ + M+++ F L A+ L
Sbjct: 336 SFEDKLVYAEDYIMDEDQSKLAGLLDLNNSILQLVKKYRTMKLEKEEFVTLKAIAL 391
>gi|26006215|dbj|BAC41450.1| mKIAA0832 protein [Mus musculus]
Length = 466
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 161/349 (46%), Gaps = 60/349 (17%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 79 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 138
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FF RT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 139 CGDIASGYHYGVASCEACKAFFNRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 198
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 199 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 239
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 240 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 273
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 274 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 333
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 334 YADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 382
>gi|419590183|dbj|BAM66777.1| retinoic acid receptor [Polyandrocarpa misakiensis]
Length = 503
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 143/297 (48%), Gaps = 31/297 (10%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VCGD ++ HYGV +CEGCKGFF+R+VQK +Y C +K C ++K R+RCQ+CR QK
Sbjct: 139 CFVCGDKSSGYHYGVASCEGCKGFFRRSVQKNMQYTCHRNKNCVINKSTRSRCQYCRLQK 198
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C QVGM+KE VR D K +RG+ K+ SP P ++ PE
Sbjct: 199 CFQVGMLKESVRNDRNK-KRGK-EKDGKTGDTSPSGQPEEIVVT--------------PE 242
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE----PP 218
I+ S+ V + D P DL K + L P P + PP
Sbjct: 243 -IENIVSV------VAKAHLDTFPKNEDLNKYNTAEGQGDKPLS----PPTPSDASGSPP 291
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + +F L T S+ I FA +PGF+DL DQ L +SA LE+ R+ R
Sbjct: 292 PVDVKLWSKFSDLSTKSIIKIVEFAKSVPGFTDLTIADQITLLKSACLEILFFRICSRYD 351
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + F +G+ L + Q + + F +SL ++D + LCA+ L+
Sbjct: 352 NSNDTMSFSDGLTLNRDQLRNCAFGPMTEQVFGFAKSLTPFDLDHTEGGLLCAICLM 408
>gi|327262519|ref|XP_003216071.1| PREDICTED: estrogen-related receptor gamma-like [Anolis
carolinensis]
Length = 441
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 145/296 (48%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 107 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 166
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + E+ P L P +
Sbjct: 167 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQL 209
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+P K + Y+ + + + V A E Y P+P P
Sbjct: 210 VQPAK--KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD 242
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + VI +A IPGFS L DQ L QSA +E+ +L + YR+
Sbjct: 243 -SDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSL 301
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +L++ ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 302 SFEDELVYAEDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 357
>gi|47086127|ref|NP_998119.1| estrogen-related receptor gamma [Danio rerio]
gi|45479150|gb|AAS66636.1| estrogen-related receptor gamma [Danio rerio]
Length = 435
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 139/296 (46%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 101 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 160
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL VGM++E VR D ++G GR K + E+ P Y P PP
Sbjct: 161 RFMKCLTVGMMREGVRLDRVRG--GRQKYKRRIDAENSP----------YLNPQLALPPK 208
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
KI + H P E Y P+P P
Sbjct: 209 KPYNKI-------------VSHLLVAEP-------------------EKIYAMPDPTVPD 236
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + V +A IPGFS L DQ L QSA +E+ +LR+ YR+
Sbjct: 237 -SDIKALTTLCDLADRELVVNIGWAKHIPGFSTLSLADQMSLLQSAWMEILILRVVYRSL 295
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + KL++ ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 296 SFEDKLVYAEDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 351
>gi|395531379|ref|XP_003767757.1| PREDICTED: estrogen-related receptor gamma isoform 1 [Sarcophilus
harrisii]
Length = 458
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 142/298 (47%), Gaps = 49/298 (16%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 124 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 183
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP- 157
RF KCL+VGM+KE VR D ++G GR K + E+ P L+ + N +
Sbjct: 184 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHL 241
Query: 158 -IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
+AEPEKI Y P+P
Sbjct: 242 LVAEPEKI--------------------------------------------YAMPDPTV 257
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
P ++ + + L + VI +A IPGFS L DQ L QSA +E+ +L + YR
Sbjct: 258 PD-SDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYR 316
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + + +L++ ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 317 SLSFEDELVYAEDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 374
>gi|281351453|gb|EFB27037.1| hypothetical protein PANDA_002694 [Ailuropoda melanoleuca]
Length = 432
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 143/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCLQVGM++E VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFTKCLQVGMLREGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 206 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 228 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+AYR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IAYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|3046863|dbj|BAA25569.1| retinoic acid receptor homologue [Polyandrocarpa misakiensis]
Length = 434
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 143/297 (48%), Gaps = 31/297 (10%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VCGD ++ HYGV +CEGCKGFF+R+VQK +Y C +K C ++K R+RCQ+CR QK
Sbjct: 70 CFVCGDKSSGYHYGVASCEGCKGFFRRSVQKNMQYTCHRNKNCVINKSTRSRCQYCRLQK 129
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C QVGM+KE VR D K +RG+ K+ SP P E + PE
Sbjct: 130 CFQVGMLKESVRNDRNK-KRGK-EKDGKTGDTSPSGQP--------------EEIVVTPE 173
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE----PP 218
I+ S+ V + D P DL K + L P P + PP
Sbjct: 174 -IENIVSV------VAKAHLDTFPKNEDLNKYNTAEGQGDKPLS----PPTPSDASGSPP 222
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + +F L T S+ I FA +PGF+DL DQ L +SA LE+ R+ R
Sbjct: 223 PVDVKLWSKFSDLSTKSIIKIVEFAKSVPGFTDLTIADQITLLKSACLEILFFRICSRYD 282
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + F +G+ L + Q + + F +SL ++D + LCA+ L+
Sbjct: 283 NSNDTMSFSDGLTLNRDQLRNCAFGPMTEQVFGFAKSLTPFDLDHTEGGLLCAICLM 339
>gi|156556061|emb|CAO79100.1| ecdysone-induced protein 78C [Aedes aegypti]
gi|403182348|gb|EAT48623.2| AAEL000327-PA [Aedes aegypti]
Length = 431
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 162/342 (47%), Gaps = 48/342 (14%)
Query: 28 GCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPV 87
G D S T C VCGD A+ HYGV +CEGCKGFF+R++QK +Y CL D C V
Sbjct: 11 GSDASSTTSSKTFVACKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLV 70
Query: 88 DKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQ----------ESPP 137
+ RNRCQ+CRF+KCL VGM ++ V R GR+P K + S
Sbjct: 71 IRLNRNRCQYCRFKKCLAVGMSRDSV-------RYGRVPKKSREAGNCAEDMNVCVNSTT 123
Query: 138 SPPVSLITALYREPNPLEPPIAEPE--KIQQFYSLLTTSV--------------DVIRHF 181
VS +++ P P P I +I +++TT + D+I
Sbjct: 124 PTQVSQLSSCGGTPTPTAPVITMTNCAEISTSTAVVTTILPDSMTFSPPELSIYDIIHCV 183
Query: 182 ADKIPGFSDLCKEDQELLFQSASLELF-YREPNPL---EPPIAEPEKI---QQFYSLLTT 234
A G S EL+ + + L Y E N L E ++I QQ+ +T
Sbjct: 184 AQAHRGHSTY---TTELVKEQTRISLVNYSEKNNLIMQSLDTIEDQRIWLWQQYAMRMTP 240
Query: 235 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEK 294
SV + FA ++PGF + ++DQ +L + E+++ +A T D+ L F +GV + +
Sbjct: 241 SVQRVVEFAKRVPGFGEFLQDDQLILIKLGFFEVWLSHVARAT--NDSALTFDDGVYVTR 298
Query: 295 QQCQRSFGDDWLNAILEFCQSLH---LMEIDISAFACLCALT 333
QQ + + D+ NA+ F L+ L + +I ++ L +T
Sbjct: 299 QQLEVIYDVDYANALFSFTSGLNNCCLSDTEIGLYSALILMT 340
>gi|440911071|gb|ELR60797.1| Steroid hormone receptor ERR2, partial [Bos grunniens mutus]
Length = 458
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 146/303 (48%), Gaps = 49/303 (16%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 114 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 173
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 174 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 220
Query: 159 AEPEKIQQFYSL-LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE- 216
+P Y L L +V I + L EP+ L
Sbjct: 221 KKP----CIYILPLVFAVTKIVSY-------------------------LLVAEPDKLYA 251
Query: 217 -PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVL 271
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 252 MPPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILIL 311
Query: 272 RLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L A
Sbjct: 312 GIVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKA 371
Query: 332 LTL 334
L L
Sbjct: 372 LAL 374
>gi|348534128|ref|XP_003454555.1| PREDICTED: estrogen-related receptor gamma-like [Oreochromis
niloticus]
Length = 502
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 142/296 (47%), Gaps = 38/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 161 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 220
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL VGM++E VR D ++G GR K + ++ P L P +
Sbjct: 221 RFMKCLTVGMLREGVRLDRVRG--GRQKYKRRIDADNSPY---------------LNPQL 263
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A P K + L + ++ H P E Y P+P P
Sbjct: 264 ALPPKKPFAFGCLADN-KIVSHLLVAEP-------------------EKIYAMPDPTVPD 303
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + V +A IPGFS L DQ L QSA +E+ +LR+ YR+
Sbjct: 304 -SDIKALTTLCDLADRELVVNIGWAKHIPGFSTLSLADQMSLLQSAWMEILILRVVYRSL 362
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ KL++ ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 363 PFEDKLVYAEDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 418
>gi|345803726|ref|XP_003435099.1| PREDICTED: steroid hormone receptor ERR2 [Canis lupus familiaris]
Length = 347
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 142/296 (47%), Gaps = 38/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 6 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 65
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + ES P P P +
Sbjct: 66 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRLDSESSPLHP--------------SPFL 109
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
P +SL T KI + + + D+ Y P P P
Sbjct: 110 FSPTFTFLLWSLAVT----------KIVSYLLVAEPDK-----------LYAMPPPGMPE 148
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + VI +A IPGFS+L DQ L QSA +E+ +L + YR+
Sbjct: 149 -GDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILGIVYRSL 207
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D KL++ +++++ + + + AIL+ + ++++ F L AL L
Sbjct: 208 PYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKALAL 263
>gi|225196211|gb|ACN82378.1| neuron-derived nuclear orphan receptor [Taeniopygia guttata]
Length = 267
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/73 (90%), Positives = 69/73 (94%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD AACQHYGVRTCEGCKGFFKRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQK
Sbjct: 195 CAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQK 254
Query: 103 CLQVGMVKEVVRT 115
CL VGMVKEVVRT
Sbjct: 255 CLSVGMVKEVVRT 267
>gi|348526033|ref|XP_003450525.1| PREDICTED: estrogen-related receptor gamma-like [Oreochromis
niloticus]
Length = 433
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 141/297 (47%), Gaps = 44/297 (14%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 93 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGNIEYSCPASNECEITKRRRKACQAC 152
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ + S P+ P
Sbjct: 153 RFTKCLKVGMLKEGVRLDRVRGGRQKYKRRPEVENATYQSAPL--------------PLT 198
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
E EK +S ++ H P E + P+PL+P
Sbjct: 199 KESEK--------NSSNIIVSHLLVAEP-------------------EKLFAMPDPLQPD 231
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
A+ + L + VI +A IPGF L DQ + QS LE+ VL +AYR+
Sbjct: 232 TAQ-RTLTTLCDLADRELVVIIGWAKHIPGFLSLSLADQMSVLQSVWLEVLVLGVAYRSL 290
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLN-AILEFCQSLHLMEIDISAFACLCALTL 334
+ +++F VL+ ++ R+ G LN AI + + + +D F L A+ L
Sbjct: 291 GCEDEVVFAEDFVLD-EEMSRAAGLTELNAAISQLARRFRALNVDREEFVMLKAIAL 346
>gi|154147678|ref|NP_001093678.1| nuclear receptor subfamily 4 group A member 2 [Xenopus (Silurana)
tropicalis]
gi|172044159|sp|A4IIG7.1|NR4A2_XENTR RecName: Full=Nuclear receptor subfamily 4 group A member 2
gi|134024482|gb|AAI36010.1| nr4a2 protein [Xenopus (Silurana) tropicalis]
Length = 591
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 93/115 (80%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGFS+L K+DQ+LLF+SA LELFVLRLAYR+
Sbjct: 392 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFSELHKQDQDLLFESAFLELFVLRLAYRSNPA 451
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I++F +LH M IDISAF+C+ AL +I
Sbjct: 452 EGKLIFCNGVVLNRLQCVRGFG-EWIDSIVDFSSNLHSMNIDISAFSCIAALAVI 505
>gi|297695579|ref|XP_002825009.1| PREDICTED: steroid hormone receptor ERR2 isoform 2 [Pongo abelii]
gi|395746114|ref|XP_003778394.1| PREDICTED: steroid hormone receptor ERR2 [Pongo abelii]
Length = 508
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 206 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 228 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IVYRSLPYDDKLVYAEDYIMDEEHSRLTGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|444708813|gb|ELW49852.1| Steroid hormone receptor ERR2 [Tupaia chinensis]
Length = 433
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 206 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 228 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|431902414|gb|ELK08914.1| Estrogen-related receptor gamma [Pteropus alecto]
Length = 462
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 172/353 (48%), Gaps = 41/353 (11%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 48 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 107
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 108 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 167
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP--IAEPEK 163
VGM+KE VR D ++G GR K + E+ P L+ + N + +AEPEK
Sbjct: 168 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVAEPEK 225
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCK-EDQELLFQSASLELFYREPNPLEPPIAEP 222
I Y++ +V I + LC D+EL+ + + + + P
Sbjct: 226 I---YAMPDPTVP-----DSDIKALTTLCDLADRELV-----VIIGWAKHIP-------D 265
Query: 223 EKIQQFYSLLTTSVDVIRHFA-DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
E+ ++ L + +I + ++ GFS L DQ L QSA +E+ +L + YR+ + +
Sbjct: 266 ERAEEVRGSLGKAKGIISDLSHSEVVGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFE 325
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L++ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 326 DELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 378
>gi|403264735|ref|XP_003924628.1| PREDICTED: steroid hormone receptor ERR2 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403264737|ref|XP_003924629.1| PREDICTED: steroid hormone receptor ERR2 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 433
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 206 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 228 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|350587076|ref|XP_003482338.1| PREDICTED: steroid hormone receptor ERR2 isoform 3 [Sus scrofa]
Length = 347
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 142/296 (47%), Gaps = 38/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 6 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 65
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + ES P L+ P L P I
Sbjct: 66 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRLDSESSP---------LHLGPLLLSPRI 114
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
D +P + K LL A + Y P P P
Sbjct: 115 ------------------------DTLPLVVAVTKIVSYLLV--AEPDKLYAMPPPGMPE 148
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + VI +A IPGFS+L DQ L QSA +E+ +L + YR+
Sbjct: 149 -GDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILGIVYRSL 207
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D KL++ +++++ + + + AIL+ + ++++ F L AL L
Sbjct: 208 PYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKALAL 263
>gi|345803722|ref|XP_547920.3| PREDICTED: steroid hormone receptor ERR2 isoform 1 [Canis lupus
familiaris]
Length = 433
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 206 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 228 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|296215575|ref|XP_002754188.1| PREDICTED: steroid hormone receptor ERR2 [Callithrix jacchus]
gi|402876791|ref|XP_003902137.1| PREDICTED: steroid hormone receptor ERR2 isoform 1 [Papio anubis]
gi|355693461|gb|EHH28064.1| hypothetical protein EGK_18405 [Macaca mulatta]
gi|355778752|gb|EHH63788.1| hypothetical protein EGM_16828 [Macaca fascicularis]
Length = 433
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 206 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 228 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|338720009|ref|XP_001491623.3| PREDICTED: steroid hormone receptor ERR2 [Equus caballus]
Length = 433
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 206 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 228 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|348519741|ref|XP_003447388.1| PREDICTED: nuclear receptor subfamily 4 group A member 2-like
[Oreochromis niloticus]
Length = 598
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+ IQQFY LLT S+++IR +A+KIPGFSDL K+DQ+LLF+SA LELFVLRLAYR+ +
Sbjct: 401 QHIQQFYDLLTGSMEIIRGWAEKIPGFSDLPKQDQDLLFESAFLELFVLRLAYRSNPVEG 460
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KLIFCNGVVL + QC R FG +W++AI+EF +L M IDISAF+C+ AL ++
Sbjct: 461 KLIFCNGVVLHRLQCVRGFG-EWVDAIVEFSSNLQSMNIDISAFSCIAALAMV 512
>gi|291406725|ref|XP_002719622.1| PREDICTED: estrogen-related receptor beta-like [Oryctolagus
cuniculus]
Length = 454
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 120 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 179
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 180 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 226
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 227 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 248
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 249 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 308
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 309 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 368
Query: 333 TL 334
L
Sbjct: 369 AL 370
>gi|194038596|ref|XP_001928086.1| PREDICTED: steroid hormone receptor ERR2 isoform 1 [Sus scrofa]
Length = 433
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 206 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 228 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|410048538|ref|XP_003952591.1| PREDICTED: steroid hormone receptor ERR2 [Pan troglodytes]
Length = 500
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 206 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 228 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|332842666|ref|XP_001162740.2| PREDICTED: steroid hormone receptor ERR2 isoform 4 [Pan
troglodytes]
Length = 508
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 206 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 228 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|359069796|ref|XP_002691167.2| PREDICTED: steroid hormone receptor ERR2 isoform 1 [Bos taurus]
Length = 433
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 206 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 228 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|426377562|ref|XP_004055532.1| PREDICTED: steroid hormone receptor ERR2 [Gorilla gorilla gorilla]
Length = 508
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 206 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 228 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|410915274|ref|XP_003971112.1| PREDICTED: estrogen-related receptor gamma-like [Takifugu rubripes]
Length = 431
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/320 (32%), Positives = 150/320 (46%), Gaps = 47/320 (14%)
Query: 17 SAPLSSASSSPG-CDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGS 75
A SSA + G C + T P +LC VCGD+A+ HYGV +CE CK FFKRT+Q
Sbjct: 70 GAEESSAGNGAGRCKYALSTLPK--RLCLVCGDVASGYHYGVASCEACKAFFKRTIQGNI 127
Query: 76 KYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQES 135
+Y C A C + KRRR CQ CRF KCL+VGM+KE VR D ++G R + +P+ +
Sbjct: 128 EYSCPASNECEITKRRRKACQACRFTKCLKVGMLKEGVRLDRVRGGRQKYKRRPEVENAT 187
Query: 136 PPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 195
S P+ L E EK +S ++ H P
Sbjct: 188 YQSAPLQLTK--------------EAEK--------GSSNIIVSHLLVAEP--------- 216
Query: 196 QELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE 255
E + P+PL+P A+ + L + VI +A IPGF L
Sbjct: 217 ----------EKLFAMPDPLQPDTAQ-RTLTTLCDLADRELVVIIGWAKHIPGFLSLSLA 265
Query: 256 DQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLN-AILEFCQ 314
DQ + QS LE+ VL +AYR+ + +++F VL+ ++ R G LN AI + +
Sbjct: 266 DQMSVLQSVWLEVLVLGVAYRSIGCEDEVVFAEDFVLD-EEMSRVAGLTELNAAISQLAR 324
Query: 315 SLHLMEIDISAFACLCALTL 334
+ +D F L A++L
Sbjct: 325 RFRALNVDREEFVMLKAISL 344
>gi|345328130|ref|XP_001508960.2| PREDICTED: nuclear receptor subfamily 4 group A member 2-like
[Ornithorhynchus anatinus]
Length = 532
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 333 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFTDLSKSDQDLLFESAFLELFVLRLAYRSNPV 392
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
D KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 393 DGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 446
>gi|395503873|ref|XP_003756286.1| PREDICTED: steroid hormone receptor ERR2 [Sarcophilus harrisii]
Length = 439
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 143/296 (48%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 105 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 164
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S S +SL + P P + P+
Sbjct: 165 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSTYLSL-----QIPPPAKKPL 215
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 216 TK----------------IVSHLLVAEP-------------------EKIYAMPDPTMPE 240
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + VI +A IPGFS+L DQ L QSA +E+ +L + YR+
Sbjct: 241 -SDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILGIVYRSL 299
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D KL++ +++++ + + + AIL+ + ++++ F L AL L
Sbjct: 300 PYDDKLVYAEDYIMDEEHSRLTGLLELYLAILQLVRRYKKLKVEKEEFVTLKALAL 355
>gi|296482880|tpg|DAA24995.1| TPA: estrogen-related receptor beta [Bos taurus]
Length = 505
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 171 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 230
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 231 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 277
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 278 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 299
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 300 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 359
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 360 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 419
Query: 333 TL 334
L
Sbjct: 420 AL 421
>gi|42412383|gb|AAS15571.1| estrogen receptor-related receptor beta short form [Homo sapiens]
Length = 433
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 141/302 (46%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 206 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS L DQ L QSA +E+ +L
Sbjct: 228 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSSLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|395827581|ref|XP_003786978.1| PREDICTED: steroid hormone receptor ERR2 [Otolemur garnettii]
Length = 433
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 142/303 (46%), Gaps = 59/303 (19%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEP-EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL-- 215
+P KI + L EP+ L
Sbjct: 206 KKPLAKIVSY---------------------------------------LLVAEPDKLYA 226
Query: 216 EPPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVL 271
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 227 MPPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILIL 286
Query: 272 RLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L A
Sbjct: 287 GIVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKA 346
Query: 332 LTL 334
L L
Sbjct: 347 LAL 349
>gi|334310553|ref|XP_001374519.2| PREDICTED: steroid hormone receptor ERR2-like, partial [Monodelphis
domestica]
Length = 487
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 143/296 (48%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 164 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 223
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S S +SL + P P + P+
Sbjct: 224 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSTYLSL-----QIPPPAKKPL 274
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 275 TK----------------IVSHLLVAEP-------------------EKIYAMPDPTMPE 299
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + VI +A IPGFS+L DQ L QSA +E+ +L + YR+
Sbjct: 300 -SDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILGIVYRSL 358
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D KL++ +++++ + + + AIL+ + ++++ F L AL L
Sbjct: 359 PYDDKLVYAEDYIMDEEHSRLTGLLELYLAILQLVRRYKKLKVEKEEFVTLKALAL 414
>gi|4092073|gb|AAC99409.1| nuclear receptor ERRB2 [Homo sapiens]
gi|119601664|gb|EAW81258.1| estrogen-related receptor beta [Homo sapiens]
gi|151556470|gb|AAI48478.1| Estrogen-related receptor beta [synthetic construct]
gi|208966222|dbj|BAG73125.1| estrogen-related receptor beta [synthetic construct]
Length = 500
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 142/296 (47%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+P LT V + L E +L Y P P P
Sbjct: 206 KKP---------LTKIVSYL------------LVAEPDKL----------YAMPPPGMPE 234
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + VI +A IPGFS L DQ L QSA +E+ +L + YR+
Sbjct: 235 -GDIKALTTLCDLADRELVVIIGWAKHIPGFSSLSLGDQMSLLQSAWMEILILGIVYRSL 293
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D KL++ +++++ + + + AIL+ + ++++ F L AL L
Sbjct: 294 PYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKALAL 349
>gi|216409736|dbj|BAH02305.1| estrogen-related receptor beta [Homo sapiens]
Length = 433
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 142/296 (47%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+P LT V + L E +L Y P P P
Sbjct: 206 KKP---------LTKIVSYL------------LVAEPDKL----------YAMPPPGMPE 234
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + VI +A IPGFS L DQ L QSA +E+ +L + YR+
Sbjct: 235 -GDIKALTTLCDLAERELVVIIGWAKHIPGFSSLSLGDQMSLLQSAWMEILILGIVYRSL 293
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D KL++ +++++ + + + AIL+ + ++++ F L AL L
Sbjct: 294 PYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKALAL 349
>gi|26327831|dbj|BAC27656.1| unnamed protein product [Mus musculus]
Length = 433
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 144/296 (48%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYNCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP ++L P+ PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSENSPYLNL---------PISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+P LT V S+L +Q+ +L+ PN + P
Sbjct: 206 KKP---------LTKIV-------------SNLLGVEQD--------KLYAMPPNDI--P 233
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + + ++A IPGF L DQ L QSA +E+ +L + YR+
Sbjct: 234 EGDIKALTTLCELADRGLVFLINWAKHIPGFPSLTLGDQMSLLQSAWMEILILGIVYRSL 293
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D KL + +++++ + D AIL+ + ++++ F L AL L
Sbjct: 294 PYDDKLAYAEDYIMDEEHSRLVGLLDLYRAILQLVRRYKKLKVEKEEFMILKALAL 349
>gi|12657450|emb|CAC27783.1| nuclear receptor related 1 [Oryzias latipes]
Length = 600
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/113 (61%), Positives = 92/113 (81%), Gaps = 1/113 (0%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+ IQQFY LLT S+++IR +A+KIPGFSDL K+DQ+LLF+SA LELFVLRLAYR+ +
Sbjct: 403 QHIQQFYDLLTGSMEIIRGWAEKIPGFSDLPKQDQDLLFESAFLELFVLRLAYRSNPVEG 462
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KLIFCNGVVL + QC R FG +W++AI+EF +L ++IDISAF+C+ AL ++
Sbjct: 463 KLIFCNGVVLHRLQCVRGFG-EWVDAIVEFSSNLQSLDIDISAFSCIAALAMV 514
>gi|47086129|ref|NP_998120.1| steroid hormone receptor ERR1 [Danio rerio]
gi|45479146|gb|AAS66634.1| estrogen-related receptor alpha [Danio rerio]
Length = 436
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 141/297 (47%), Gaps = 44/297 (14%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 96 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGNIEYSCPASNECEITKRRRKACQAC 155
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ + S P+ P
Sbjct: 156 RFTKCLKVGMLKEGVRLDRVRGGRQKYKRRPEVENATYQSAPI--------------PLR 201
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
E EK +S ++ H P E + P+PL+P
Sbjct: 202 KEGEK--------GSSSIIVSHLLVAEP-------------------EKLFAMPDPLQPD 234
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
A+ + L + VI +A IPGF L DQ + QS LE+ VL +AYR+
Sbjct: 235 TAQ-RTLTTLCDLADRELVVIIGWAKHIPGFLSLSLADQMSVLQSVWLEVLVLGVAYRSL 293
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLN-AILEFCQSLHLMEIDISAFACLCALTL 334
+ +++F VL+ ++ R G LN AI + + +++D F L A+ L
Sbjct: 294 GCEDEVVFAEDFVLD-EEMSRVAGLTELNAAISQLARRFRALQLDREEFVMLKAIAL 349
>gi|238550159|ref|NP_004443.3| steroid hormone receptor ERR2 [Homo sapiens]
gi|374095385|sp|O95718.2|ERR2_HUMAN RecName: Full=Steroid hormone receptor ERR2; AltName: Full=ERR
beta-2; AltName: Full=Estrogen receptor-like 2; AltName:
Full=Estrogen-related receptor beta; Short=ERR-beta;
AltName: Full=Nuclear receptor subfamily 3 group B
member 2
gi|42412385|gb|AAS15572.1| estrogen receptor-related receptor beta2-delta-10 [Homo sapiens]
gi|325495515|gb|ADZ17363.1| estrogen-related nuclear receptor beta [Homo sapiens]
Length = 508
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 141/302 (46%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 206 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS L DQ L QSA +E+ +L
Sbjct: 228 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSSLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|47219415|emb|CAG01578.1| unnamed protein product [Tetraodon nigroviridis]
Length = 443
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 148/320 (46%), Gaps = 45/320 (14%)
Query: 16 HSAPLSSASSSPG-CDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG 74
A SSA + G C + T P +LC VCGD+A+ HYGV +CE CK FFKRT+Q
Sbjct: 82 EGAEESSAGNGAGRCKYALSTLPK--RLCLVCGDVASGYHYGVASCEACKAFFKRTIQGN 139
Query: 75 SKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQE 134
+Y C A C + KRRR CQ CRF KCL+VGM+KE VR D ++G R + +P+
Sbjct: 140 IEYSCPASNECEITKRRRKACQACRFTKCLKVGMLKEGVRLDRVRGGRQKYKRRPEVENA 199
Query: 135 SPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE 194
+ S P+ L E EK +S ++ H P
Sbjct: 200 TYQSAPLQLTK--------------ETEK--------GSSNIIVSHLLVAEP-------- 229
Query: 195 DQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 254
E + P+PL+P A+ + L + VI +A IPGF L
Sbjct: 230 -----------EKLFAMPDPLQPDTAQ-RTLTTLCDLADRELVVIIGWAKHIPGFLSLSL 277
Query: 255 EDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQ 314
DQ + QS LE+ VL +AYR+ + +++F VL+++ + + + AI + +
Sbjct: 278 ADQMSVLQSVWLEVLVLGVAYRSIGCEDEVVFAEDFVLDEEMSRVASLTELNAAISQLAR 337
Query: 315 SLHLMEIDISAFACLCALTL 334
+ +D F L A+ L
Sbjct: 338 RFRALNVDREEFVMLKAIAL 357
>gi|126031790|gb|AAI31518.1| ESRRB protein [Homo sapiens]
Length = 503
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 141/302 (46%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 206 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS L DQ L QSA +E+ +L
Sbjct: 228 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSSLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|83406145|gb|AAI11278.1| ESRRB protein [Bos taurus]
Length = 478
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 144 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 203
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 204 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 250
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT + L EP+ L
Sbjct: 251 KKP---------LTKIISY-----------------------------LLVAEPDKLYAM 272
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 273 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 332
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 333 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 392
Query: 333 TL 334
L
Sbjct: 393 AL 394
>gi|387017364|gb|AFJ50800.1| Nuclear receptor subfamily 4 group A member 2-like [Crotalus
adamanteus]
Length = 216
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 92/115 (80%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+D+IR +A+KIPGF+DL K+DQ+LLF+SA LELFVLRLAYR+
Sbjct: 17 DTQHIQQFYDLLTGSMDIIRGWAEKIPGFTDLPKQDQDLLFESAFLELFVLRLAYRSNPV 76
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF SL M IDISAF+C+ AL ++
Sbjct: 77 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSSLQNMNIDISAFSCIAALAMV 130
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 48/62 (77%), Gaps = 6/62 (9%)
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF-----YREPNP 214
+ + IQQFY LLT S+D+IR +A+KIPGF+DL K+DQ+LLF+SA LELF YR NP
Sbjct: 17 DTQHIQQFYDLLTGSMDIIRGWAEKIPGFTDLPKQDQDLLFESAFLELFVLRLAYRS-NP 75
Query: 215 LE 216
+E
Sbjct: 76 VE 77
>gi|194670835|ref|XP_606860.4| PREDICTED: steroid hormone receptor ERR2 [Bos taurus]
Length = 474
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 102/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 171 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 230
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 231 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 277
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 278 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 299
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 300 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 359
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 360 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 419
Query: 333 TL 334
L
Sbjct: 420 AL 421
>gi|157278573|ref|NP_001098387.1| estrogen-related receptor alpha [Oryzias latipes]
gi|146395236|gb|ABQ24185.1| estrogen-related receptor alpha [Oryzias latipes]
Length = 433
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 139/297 (46%), Gaps = 44/297 (14%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 93 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGNIEYSCPASNECEITKRRRKACQAC 152
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ + S P+ P
Sbjct: 153 RFTKCLKVGMLKEGVRLDRVRGGRQKYKRRPEVENATYQSAPL--------------PLT 198
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
E EK S ++ H P E + P+PL+P
Sbjct: 199 KESEK--------GASSIIVSHLLVAEP-------------------EKLFAMPDPLQPD 231
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
A+ + L + VI +A IPGF L DQ + QS LE+ VL +AYR+
Sbjct: 232 TAQ-RTLTTLCDLADRELVVIIGWAKHIPGFLSLSLADQMSVLQSVWLEVLVLGVAYRSL 290
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLN-AILEFCQSLHLMEIDISAFACLCALTL 334
+ +++F VL+ + R+ G LN AI + + + +D F L A+ L
Sbjct: 291 GCEDEVVFAEDFVLD-EDMSRAAGLTELNAAISQLARRFRTLNLDREEFVMLKAIAL 346
>gi|344273589|ref|XP_003408603.1| PREDICTED: steroid hormone receptor ERR2-like [Loxodonta africana]
Length = 501
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 167 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 226
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 227 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 273
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 274 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 295
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 296 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 355
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + A+L+ + ++++ F L AL
Sbjct: 356 IVYRSLPYDDKLVYAQDYIMDEEHSRLAGLLELYRALLQLVRRYKKLKVEKEEFVTLKAL 415
Query: 333 TL 334
L
Sbjct: 416 AL 417
>gi|28277057|gb|AAH44858.1| Esrrb protein [Mus musculus]
Length = 434
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 144/296 (48%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 100 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYNCPATNECEITKRRRKSCQAC 159
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP ++L P+ PP
Sbjct: 160 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSENSPYLNL---------PISPPA 206
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+P LT V S+L +Q+ +L+ PN + P
Sbjct: 207 KKP---------LTKIV-------------SNLLGVEQD--------KLYAMPPNDI--P 234
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + + ++A IPGF L DQ L QSA +E+ +L + YR+
Sbjct: 235 EGDIKALTTLCELADRELVFLINWAKHIPGFPSLTLGDQMSLLQSAWMEILILGIVYRSL 294
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D KL + +++++ + D AIL+ + ++++ F L AL L
Sbjct: 295 PYDDKLAYAEDYIMDEEHSRLVGLLDLYRAILQLVRRYKKLKVEKEEFMILKALAL 350
>gi|432932501|ref|XP_004081770.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 [Oryzias
latipes]
Length = 598
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/113 (61%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+ IQQFY LLT S+++IR +A+KIPGFSDL K+DQ+LLF+SA LELFVLRLAYR+ +
Sbjct: 401 QHIQQFYDLLTGSMEIIRGWAEKIPGFSDLPKQDQDLLFESAFLELFVLRLAYRSNPVEG 460
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KLIFCNGVVL + QC R FG +W++AI+EF +L + IDISAF+C+ AL ++
Sbjct: 461 KLIFCNGVVLHRLQCVRGFG-EWVDAIVEFSSNLQSLNIDISAFSCIAALAMV 512
>gi|408360079|sp|Q61539.2|ERR2_MOUSE RecName: Full=Steroid hormone receptor ERR2; AltName: Full=Estrogen
receptor-like 2; AltName: Full=Estrogen-related receptor
beta; Short=ERR-beta; AltName: Full=Nuclear receptor
subfamily 3 group B member 2
gi|26342472|dbj|BAC34898.1| unnamed protein product [Mus musculus]
gi|161899619|gb|AAI32596.2| Estrogen related receptor, beta [Mus musculus]
gi|161899644|gb|AAI32598.2| Estrogen related receptor, beta [Mus musculus]
Length = 433
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 144/296 (48%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYNCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP ++L P+ PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSENSPYLNL---------PISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+P LT V S+L +Q+ +L+ PN + P
Sbjct: 206 KKP---------LTKIV-------------SNLLGVEQD--------KLYAMPPNDI--P 233
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + + ++A IPGF L DQ L QSA +E+ +L + YR+
Sbjct: 234 EGDIKALTTLCELADRELVFLINWAKHIPGFPSLTLGDQMSLLQSAWMEILILGIVYRSL 293
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D KL + +++++ + D AIL+ + ++++ F L AL L
Sbjct: 294 PYDDKLAYAEDYIMDEEHSRLVGLLDLYRAILQLVRRYKKLKVEKEEFMILKALAL 349
>gi|226958367|ref|NP_001152972.1| steroid hormone receptor ERR2 isoform 2 [Mus musculus]
Length = 438
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 144/296 (48%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 104 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYNCPATNECEITKRRRKSCQAC 163
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP ++L P+ PP
Sbjct: 164 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSENSPYLNL---------PISPPA 210
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+P LT V S+L +Q+ +L+ PN + P
Sbjct: 211 KKP---------LTKIV-------------SNLLGVEQD--------KLYAMPPNDI--P 238
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + + ++A IPGF L DQ L QSA +E+ +L + YR+
Sbjct: 239 EGDIKALTTLCELADRELVFLINWAKHIPGFPSLTLGDQMSLLQSAWMEILILGIVYRSL 298
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D KL + +++++ + D AIL+ + ++++ F L AL L
Sbjct: 299 PYDDKLAYAEDYIMDEEHSRLVGLLDLYRAILQLVRRYKKLKVEKEEFMILKALAL 354
>gi|82504021|gb|ABB80450.1| estrogen receptor-related receptor alpha [Fundulus heteroclitus]
Length = 433
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 141/297 (47%), Gaps = 44/297 (14%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 93 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGNIEYSCPASNECEITKRRRKACQAC 152
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ + S P+SL
Sbjct: 153 RFTKCLKVGMLKEGVRLDRVRGGRQKYKRRPEVENATYQSAPLSLTK------------- 199
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
E EK +S ++ H P E + P+PL+P
Sbjct: 200 -ESEK--------GSSNIIVSHLLVAEP-------------------EKLFAMPDPLQPD 231
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
A+ + L + VI +A IPGF L DQ + QS LE+ VL +A+R+
Sbjct: 232 TAQ-RTLTTLCDLADRELVVIIGWAKHIPGFLSLSLADQMSVLQSVWLEVLVLGVAFRSI 290
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLN-AILEFCQSLHLMEIDISAFACLCALTL 334
+ +++F VL+ ++ R G LN AI + + + +D F L A+ L
Sbjct: 291 GCEDEVVFAEDFVLD-EEMSRVAGLTELNAAISQLARRFRALNVDREEFVMLKAIAL 346
>gi|226958365|ref|NP_036064.3| steroid hormone receptor ERR2 isoform 1 [Mus musculus]
gi|148670955|gb|EDL02902.1| estrogen related receptor, beta, isoform CRA_b [Mus musculus]
Length = 454
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 144/296 (48%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 120 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYNCPATNECEITKRRRKSCQAC 179
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP ++L P+ PP
Sbjct: 180 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSENSPYLNL---------PISPPA 226
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+P LT V S+L +Q+ +L+ PN + P
Sbjct: 227 KKP---------LTKIV-------------SNLLGVEQD--------KLYAMPPNDI--P 254
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + + ++A IPGF L DQ L QSA +E+ +L + YR+
Sbjct: 255 EGDIKALTTLCELADRELVFLINWAKHIPGFPSLTLGDQMSLLQSAWMEILILGIVYRSL 314
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D KL + +++++ + D AIL+ + ++++ F L AL L
Sbjct: 315 PYDDKLAYAEDYIMDEEHSRLVGLLDLYRAILQLVRRYKKLKVEKEEFMILKALAL 370
>gi|16797882|gb|AAL29199.1|AF323686_1 nuclear receptor AmNR6 [Acropora millepora]
Length = 340
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 144/297 (48%), Gaps = 49/297 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
S ++CA+CGD ++ HYGV++CEGCK FFKRTVQK Y C+ + +C +DK R RCQF
Sbjct: 6 STKRICAICGDRSSGFHYGVQSCEGCKSFFKRTVQKQLHYTCVENMSCQIDKNNRIRCQF 65
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCL +GM+KE VR D G R R+ S + + L+T L + P
Sbjct: 66 CRFQKCLSLGMLKEAVREDRAPGGRPRIKSLMGMKENADTFVSSELVTQLIQAR-----P 120
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
A P+K + L GF D+C PL P
Sbjct: 121 DAIPKKRPDYVDL----------------GFVDIC---------------------PLNP 143
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
++ L VD++ + K+PGF +L +EDQ L SA LELFVLR+ R+
Sbjct: 144 -------VEIIMDLALQEVDLMVAWTYKVPGFKELDREDQASLLSSALLELFVLRVCQRS 196
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ ++L + + W + + F L +++D++ FAC+ A+ L
Sbjct: 197 SPHQGSVLVAKDILLNPEHSFNMVLEQWSSQLACFSYKLQSLQLDMAEFACVNAIML 253
>gi|914856|emb|CAA61755.1| estrogen receptor related receptor cDNA-2 [Mus musculus]
gi|1703648|gb|AAB37687.1| mERR-2 [Mus sp.]
Length = 433
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 144/296 (48%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYNCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP ++L P+ PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSENSPYLNL---------PISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+P LT V S+L +Q+ +L+ PN + P
Sbjct: 206 KKP---------LTKIV-------------SNLLGVEQD--------KLYAMPPNDI--P 233
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + + ++A IPGF L DQ L QSA +E+ +L + YR+
Sbjct: 234 EGDIKALTTLCELADRELVFLINWAKHIPGFPSLTLGDQMSLLQSAWMEILILGIVYRSL 293
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D KL + +++++ + D AIL+ + ++++ F L AL L
Sbjct: 294 PYDDKLAYAEDYIMDEEHSRLVGLLDLYRAILQLVRRYKKLKVEKEEFMILKALAL 349
>gi|410962697|ref|XP_003987905.1| PREDICTED: steroid hormone receptor ERR2 isoform 1 [Felis catus]
Length = 433
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 142/302 (47%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 206 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 227
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 228 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 287
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ + KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 288 IVYRSLPYEDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 347
Query: 333 TL 334
L
Sbjct: 348 AL 349
>gi|148670954|gb|EDL02901.1| estrogen related receptor, beta, isoform CRA_a [Mus musculus]
Length = 394
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 144/296 (48%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 136 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYNCPATNECEITKRRRKSCQAC 195
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP ++L P+ PP
Sbjct: 196 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSENSPYLNL---------PISPPA 242
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+P LT V S+L +Q+ +L+ PN + P
Sbjct: 243 KKP---------LTKIV-------------SNLLGVEQD--------KLYAMPPNDI--P 270
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + + ++A IPGF L DQ L QSA +E+ +L + YR+
Sbjct: 271 EGDIKALTTLCELADRELVFLINWAKHIPGFPSLTLGDQMSLLQSAWMEILILGIVYRSL 330
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D KL + +++++ + D AIL+ + ++++ F L AL L
Sbjct: 331 PYDDKLAYAEDYIMDEEHSRLVGLLDLYRAILQLVRRYKKLKVEKEEFMILKALAL 386
>gi|156387534|ref|XP_001634258.1| predicted protein [Nematostella vectensis]
gi|156221339|gb|EDO42195.1| predicted protein [Nematostella vectensis]
Length = 344
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 139/297 (46%), Gaps = 49/297 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
S ++CA+CGD ++ HYGV++CEGCK FFKRTVQK +Y C+ K+C +DK R RCQ+
Sbjct: 9 SSQRVCAICGDRSSGFHYGVQSCEGCKSFFKRTVQKQLQYACVESKSCQIDKNNRIRCQY 68
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCL +GM+KE VR D G R R+ S + + LI L + P
Sbjct: 69 CRFQKCLALGMLKEAVREDRAPGGRPRIKSLIGLKENAETFVSSELIIQLIQAR-----P 123
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
A P++ + L G +D+C PL P
Sbjct: 124 DAIPKRRPDYLEL----------------GLNDMC---------------------PLNP 146
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
++ L V+ + ++A ++PGF D+ KEDQ L LE+ +LR+ R+
Sbjct: 147 -------VEAIMELTLQEVEHVINWAKRVPGFCDVDKEDQISLLSEGLLEVLILRICQRS 199
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ +L + W + F L +++D++ FAC+ A+ L
Sbjct: 200 TPHQGAVMVAKDTLLSPDNVFNIVLEQWAGQLSCFAYKLQSLQLDMAEFACVNAIML 256
>gi|154147724|ref|NP_001093680.1| estrogen-related receptor gamma [Xenopus (Silurana) tropicalis]
gi|134024290|gb|AAI36152.1| esrrg protein [Xenopus (Silurana) tropicalis]
Length = 435
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 144/296 (48%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 101 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 160
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + E+ P L P +
Sbjct: 161 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQL 203
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+P K + Y+ + + + V A E Y P+P P
Sbjct: 204 VQPAK--KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD 236
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + VI +A IPGFS L DQ L QSA +E+ +L + R+
Sbjct: 237 -SDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGIVNRSL 295
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +L++ ++++ Q + + + NAIL+ + M+++ F L A+ L
Sbjct: 296 SFEDELVYAEDYIMDEDQSKLAGLLELNNAILQLVKKYKTMKLEKEEFVTLKAIAL 351
>gi|449274815|gb|EMC83893.1| Steroid hormone receptor ERR2, partial [Columba livia]
Length = 438
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 143/296 (48%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 104 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 163
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S S +SL + P P + P+
Sbjct: 164 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSTYLSL-----QIPPPAKKPL 214
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 215 TK----------------IVSHLLVAEP-------------------EKIYAMPDPTMPE 239
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + VI +A IPGFS+L DQ L QSA +E+ +L + YR+
Sbjct: 240 -SDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILGIVYRSL 298
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ KL++ +++++ + + + AIL+ + ++++ F L AL L
Sbjct: 299 PYEDKLVYAEDYIMDEEHSRLTGLLELYLAILQLVRRYKKLKVEKEEFVTLKALAL 354
>gi|294854043|gb|ADF43963.1| retinoic acid receptor [Lymnaea stagnalis]
Length = 478
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 135/293 (46%), Gaps = 21/293 (7%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R+VQK +Y C +K C ++K RNRCQ+CR QK
Sbjct: 119 CVVCNDKSSGYHYGVSSCEGCKGFFRRSVQKNMQYTCHKEKNCVINKVTRNRCQYCRLQK 178
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C+ +GM KE VR D K R+ + S P E + LI + P
Sbjct: 179 CVVMGMSKEAVRNDRNKKRKQKPESTSGGPDEVTEDDQM-LIQEVLDAHRDTTPDGVNGS 237
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
+ S TS S+ ED S S +F E
Sbjct: 238 TLPGSSSGAATSSMAANSSPTVATSTSETKSEDD-----SGSSGVFLWE----------- 281
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+ L + + +I FA KIPGF L DQ L ++A LE+ +LR++ R +
Sbjct: 282 ----KITELSSAGIVMIVDFAKKIPGFLSLSTSDQITLLKAACLEIMILRISIRYELDTD 337
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F NG+ L ++Q QR + I F SL M D + +A L ++ LI
Sbjct: 338 TMQFSNGLSLTREQLQRGGFGPLTSTIFSFAASLKRMNCDETEYAMLSSICLI 390
>gi|326920837|ref|XP_003206673.1| PREDICTED: steroid hormone receptor ERR2-like [Meleagris gallopavo]
Length = 473
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 143/296 (48%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 139 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 198
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S S +SL + P P + P+
Sbjct: 199 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSTYLSL-----QIPPPAKKPL 249
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 250 TK----------------IVSHLLVAEP-------------------EKIYAMPDPTMPE 274
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + VI +A IPGFS+L DQ L QSA +E+ +L + YR+
Sbjct: 275 -SDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILGIVYRSL 333
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ KL++ +++++ + + + AIL+ + ++++ F L AL L
Sbjct: 334 PYEDKLVYAEDYIMDEEHSRLTGLLELYLAILQLVRRYKKLKVEKEEFVTLKALAL 389
>gi|541563|gb|AAC52143.1| nuclear orphan receptor HZF-3 [Rattus norvegicus]
Length = 598
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|118093899|ref|XP_422166.2| PREDICTED: nuclear receptor subfamily 4 group A member 2 [Gallus
gallus]
Length = 598
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFTDLPKTDQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|118091976|ref|XP_001235147.1| PREDICTED: steroid hormone receptor ERR2 [Gallus gallus]
Length = 466
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 143/296 (48%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 132 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 191
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S S +SL + P P + P+
Sbjct: 192 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSTYLSL-----QIPPPAKKPL 242
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 243 TK----------------IVSHLLVAEP-------------------EKIYAMPDPTMPE 267
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + VI +A IPGFS+L DQ L QSA +E+ +L + YR+
Sbjct: 268 -SDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILGIVYRSL 326
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ KL++ +++++ + + + AIL+ + ++++ F L AL L
Sbjct: 327 PYEDKLVYAEDYIMDEEHSRLTGLLELYLAILQLVRRYKKLKVEKEEFVTLKALAL 382
>gi|449502653|ref|XP_002200000.2| PREDICTED: steroid hormone receptor ERR2 [Taeniopygia guttata]
Length = 433
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 143/296 (48%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S S +SL + P P + P+
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSTYLSL-----QIPPPAKKPL 209
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 210 TK----------------IVSHLLVAEP-------------------EKIYAMPDPTMPE 234
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + VI +A IPGFS+L DQ L QSA +E+ +L + YR+
Sbjct: 235 -SDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILGIVYRSL 293
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ KL++ +++++ + + + AIL+ + ++++ F L AL L
Sbjct: 294 PYEDKLVYAEDYIMDEEHSRLTGLLELYLAILQLVRRYKKLKVEKEEFVTLKALAL 349
>gi|298231151|ref|NP_001177205.1| nuclear receptor subfamily 4 group A member 2 [Sus scrofa]
gi|198401845|gb|ACH87583.1| nuclear receptor subfamily 4 group A member 2 [Sus scrofa]
Length = 598
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|351715045|gb|EHB17964.1| Estrogen-related receptor gamma, partial [Heterocephalus glaber]
Length = 435
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 155/341 (45%), Gaps = 63/341 (18%)
Query: 10 ESPKLRHSAPLSSASSS-----PGCDTSRPTPPS----------PSQLCAVCGDIAACQH 54
+SP L SAPL + S S C ++ P P +LC VCGDI + H
Sbjct: 58 DSPPLYPSAPLLAGSGSVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLVCGDITSGYH 117
Query: 55 YGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVR 114
YGV +CE CK FFKRT+Q ++Y C A C + KR CQ CRF K L+VGM+KE VR
Sbjct: 118 YGVASCEACKAFFKRTIQGNTEYSCPAANECEITKRSPKSCQACRFMKSLKVGMLKEGVR 177
Query: 115 TDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPL-EPPIAEPEKIQQFYSLLTT 173
D ++G GR K + E+ P L+ + N + +AEPEKI
Sbjct: 178 LDRVRG--GRQKYKRRIDAENSPYLNAQLVQPAKKPYNKIVSHLVAEPEKI--------- 226
Query: 174 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLT 233
Y P+P P ++ + + L
Sbjct: 227 -----------------------------------YAMPDPTVPD-SDIKALTTLCGLAD 250
Query: 234 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLE 293
+ VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L++ + +++
Sbjct: 251 RELVVIIEWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYPDDYIMD 310
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
K Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 311 KDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 351
>gi|221042712|dbj|BAH13033.1| unnamed protein product [Homo sapiens]
Length = 609
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 410 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 469
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 470 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 523
>gi|115496051|ref|NP_001069676.1| nuclear receptor subfamily 4 group A member 2 [Bos taurus]
gi|122132470|sp|Q08E53.1|NR4A2_BOVIN RecName: Full=Nuclear receptor subfamily 4 group A member 2
gi|115304723|gb|AAI23416.1| Nuclear receptor subfamily 4, group A, member 2 [Bos taurus]
gi|296490582|tpg|DAA32695.1| TPA: nuclear receptor subfamily 4 group A member 2 [Bos taurus]
Length = 598
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFTDLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|390464491|ref|XP_003733229.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 3
[Callithrix jacchus]
Length = 609
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 410 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 469
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 470 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 523
>gi|198401843|gb|ACH87582.1| nuclear receptor subfamily 4 group A member 2 [Sus scrofa]
Length = 598
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|332233948|ref|XP_003266170.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 2
[Nomascus leucogenys]
gi|395732378|ref|XP_003776057.1| PREDICTED: nuclear receptor subfamily 4 group A member 2-like
isoform 2 [Pongo abelii]
gi|395846622|ref|XP_003796002.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 1
[Otolemur garnettii]
gi|403258981|ref|XP_003922017.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 2
[Saimiri boliviensis boliviensis]
gi|426337434|ref|XP_004032711.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 2
[Gorilla gorilla gorilla]
Length = 609
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 410 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 469
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 470 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 523
>gi|410968683|ref|XP_003990831.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 1
[Felis catus]
Length = 609
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 410 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 469
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 470 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 523
>gi|402888373|ref|XP_003907538.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 2
[Papio anubis]
Length = 609
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 410 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 469
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 470 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 523
>gi|397525633|ref|XP_003832764.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 2
[Pan paniscus]
Length = 609
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 410 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 469
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 470 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 523
>gi|7305325|ref|NP_038641.1| nuclear receptor subfamily 4 group A member 2 [Mus musculus]
gi|213417709|ref|NP_001132981.1| nuclear receptor subfamily 4 group A member 2 [Mus musculus]
gi|548390|sp|Q06219.1|NR4A2_MOUSE RecName: Full=Nuclear receptor subfamily 4 group A member 2;
AltName: Full=NUR-related factor 1; AltName: Full=Orphan
nuclear receptor NURR1
gi|264411|gb|AAB25138.1| Nur-related factor 1 [Mus sp.]
gi|2052390|gb|AAC53153.1| steroid/thyroid hormone orphan nuclear receptor [Mus musculus]
gi|74177352|dbj|BAE34579.1| unnamed protein product [Mus musculus]
gi|148694978|gb|EDL26925.1| nuclear receptor subfamily 4, group A, member 2, isoform CRA_a [Mus
musculus]
gi|148694980|gb|EDL26927.1| nuclear receptor subfamily 4, group A, member 2, isoform CRA_a [Mus
musculus]
gi|187953675|gb|AAI37716.1| Nuclear receptor subfamily 4, group A, member 2 [Mus musculus]
Length = 598
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|426221073|ref|XP_004004736.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 2
[Ovis aries]
Length = 609
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 410 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 469
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 470 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 523
>gi|31543340|ref|NP_062201.2| nuclear receptor subfamily 4 group A member 2 [Rattus norvegicus]
gi|2317857|gb|AAC53315.1| orphan nuclear hormone receptor [Rattus norvegicus]
gi|149047798|gb|EDM00414.1| nuclear receptor subfamily 4, group A, member 2 [Rattus norvegicus]
Length = 598
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|354488967|ref|XP_003506636.1| PREDICTED: nuclear receptor subfamily 4 group A member 2-like
[Cricetulus griseus]
gi|344249601|gb|EGW05705.1| Nuclear receptor subfamily 4 group A member 2 [Cricetulus griseus]
Length = 598
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|390464489|ref|XP_003733228.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 2
[Callithrix jacchus]
Length = 598
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|62898982|dbj|BAD97345.1| nuclear receptor subfamily 4, group A, member 2 isoform a variant
[Homo sapiens]
Length = 598
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|5453822|ref|NP_006177.1| nuclear receptor subfamily 4 group A member 2 [Homo sapiens]
gi|291391579|ref|XP_002712233.1| PREDICTED: nuclear receptor subfamily 4, group A, member 2
[Oryctolagus cuniculus]
gi|297668642|ref|XP_002812539.1| PREDICTED: nuclear receptor subfamily 4 group A member 2-like
isoform 1 [Pongo abelii]
gi|332233946|ref|XP_003266169.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 1
[Nomascus leucogenys]
gi|332814690|ref|XP_003309349.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 [Pan
troglodytes]
gi|332814692|ref|XP_001142366.2| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 3
[Pan troglodytes]
gi|344268071|ref|XP_003405887.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 [Loxodonta
africana]
gi|348585955|ref|XP_003478736.1| PREDICTED: nuclear receptor subfamily 4 group A member 2-like
[Cavia porcellus]
gi|395846624|ref|XP_003796003.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 2
[Otolemur garnettii]
gi|403258979|ref|XP_003922016.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 1
[Saimiri boliviensis boliviensis]
gi|426221071|ref|XP_004004735.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 1
[Ovis aries]
gi|426337432|ref|XP_004032710.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 1
[Gorilla gorilla gorilla]
gi|1171750|sp|P43354.1|NR4A2_HUMAN RecName: Full=Nuclear receptor subfamily 4 group A member 2;
AltName: Full=Immediate-early response protein NOT;
AltName: Full=Orphan nuclear receptor NURR1; AltName:
Full=Transcriptionally-inducible nuclear receptor
gi|415823|emb|CAA53518.1| NOT [Homo sapiens]
gi|4519607|dbj|BAA75666.1| Nurr1 [Homo sapiens]
gi|4760535|dbj|BAA77328.1| T-cell nuclear receptor NOT (Nurr1) [Homo sapiens]
gi|14424530|gb|AAH09288.1| Nuclear receptor subfamily 4, group A, member 2 [Homo sapiens]
gi|62988816|gb|AAY24203.1| unknown [Homo sapiens]
gi|119631859|gb|EAX11454.1| nuclear receptor subfamily 4, group A, member 2, isoform CRA_a
[Homo sapiens]
gi|119631860|gb|EAX11455.1| nuclear receptor subfamily 4, group A, member 2, isoform CRA_a
[Homo sapiens]
gi|190690595|gb|ACE87072.1| nuclear receptor subfamily 4, group A, member 2 protein [synthetic
construct]
gi|190691957|gb|ACE87753.1| nuclear receptor subfamily 4, group A, member 2 protein [synthetic
construct]
gi|307685739|dbj|BAJ20800.1| nuclear receptor subfamily 4, group A, member 2 [synthetic
construct]
gi|325495459|gb|ADZ17335.1| nuclear receptor related 1 [Homo sapiens]
gi|351708679|gb|EHB11598.1| Nuclear receptor subfamily 4 group A member 2 [Heterocephalus
glaber]
gi|410251398|gb|JAA13666.1| nuclear receptor subfamily 4, group A, member 2 [Pan troglodytes]
gi|410251400|gb|JAA13667.1| nuclear receptor subfamily 4, group A, member 2 [Pan troglodytes]
gi|410251402|gb|JAA13668.1| nuclear receptor subfamily 4, group A, member 2 [Pan troglodytes]
gi|410352435|gb|JAA42821.1| nuclear receptor subfamily 4, group A, member 2 [Pan troglodytes]
gi|410352439|gb|JAA42823.1| nuclear receptor subfamily 4, group A, member 2 [Pan troglodytes]
gi|410352441|gb|JAA42824.1| nuclear receptor subfamily 4, group A, member 2 [Pan troglodytes]
gi|440896775|gb|ELR48611.1| Nuclear receptor subfamily 4 group A member 2 [Bos grunniens mutus]
gi|444721587|gb|ELW62317.1| Nuclear receptor subfamily 4 group A member 2 [Tupaia chinensis]
Length = 598
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|363746124|ref|XP_003643534.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like,
partial [Gallus gallus]
Length = 100
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/87 (81%), Positives = 77/87 (88%), Gaps = 3/87 (3%)
Query: 63 CKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRR 122
CKGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQKCL VGMVKEVVRTDSLKGRR
Sbjct: 1 CKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRR 60
Query: 123 GRLPSKPKSPQESPPSPPVSLITALYR 149
GRLPSKPK P P + P+SLIT+L R
Sbjct: 61 GRLPSKPKQP---PDASPISLITSLVR 84
>gi|149730627|ref|XP_001490544.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 1
[Equus caballus]
Length = 598
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|397525631|ref|XP_003832763.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 1
[Pan paniscus]
gi|340513646|gb|AEK33397.1| nuclear receptor subfamily 4 group A member 2 [Sus scrofa]
Length = 598
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|338715667|ref|XP_003363307.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 [Equus
caballus]
Length = 609
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 410 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 469
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 470 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 523
>gi|388454033|ref|NP_001253839.1| nuclear receptor subfamily 4 group A member 2 [Macaca mulatta]
gi|402888371|ref|XP_003907537.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 1
[Papio anubis]
gi|355564906|gb|EHH21395.1| hypothetical protein EGK_04449 [Macaca mulatta]
gi|383411025|gb|AFH28726.1| nuclear receptor subfamily 4 group A member 2 [Macaca mulatta]
gi|383411027|gb|AFH28727.1| nuclear receptor subfamily 4 group A member 2 [Macaca mulatta]
Length = 598
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|75061669|sp|Q5R5Y4.1|NR4A2_PONAB RecName: Full=Nuclear receptor subfamily 4 group A member 2
gi|55732257|emb|CAH92832.1| hypothetical protein [Pongo abelii]
Length = 598
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|6166579|sp|Q07917.3|NR4A2_RAT RecName: Full=Nuclear receptor subfamily 4 group A member 2;
AltName: Full=NUR-related factor 1; AltName:
Full=Nuclear orphan receptor HZF-3; AltName: Full=Orphan
nuclear receptor NURR1; AltName: Full=Regenerating liver
nuclear receptor 1; Short=RNR-1; AltName: Full=SL-322
Length = 598
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|74004315|ref|XP_535920.2| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 1
[Canis lupus familiaris]
gi|301781788|ref|XP_002926310.1| PREDICTED: nuclear receptor subfamily 4 group A member 2-like
[Ailuropoda melanoleuca]
gi|281344784|gb|EFB20368.1| hypothetical protein PANDA_015943 [Ailuropoda melanoleuca]
Length = 598
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|431894829|gb|ELK04622.1| Nuclear receptor subfamily 4 group A member 2 [Pteropus alecto]
Length = 609
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 410 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 469
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 470 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 523
>gi|355750548|gb|EHH54875.1| hypothetical protein EGM_03974 [Macaca fascicularis]
Length = 598
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|327259316|ref|XP_003214484.1| PREDICTED: steroid hormone receptor ERR2-like [Anolis carolinensis]
Length = 474
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 143/296 (48%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 140 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 199
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S S +SL + P P + P+
Sbjct: 200 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSENSTYLSL-----QIPPPAKKPL 250
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 251 TK----------------IVSHLLVAEP-------------------EKIYAMPDPTMPE 275
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + VI +A IPGFS+L DQ L QSA +E+ +L + YR+
Sbjct: 276 -SDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILGIVYRSL 334
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ KL++ +++++ + + + AIL+ + ++++ F L AL L
Sbjct: 335 PYEDKLVYAEDYIMDEEHSRLTGLLELYLAILQLVRRYKKLKVEKEEFVTLKALAL 390
>gi|432096891|gb|ELK27466.1| Nuclear receptor subfamily 4 group A member 2 [Myotis davidii]
Length = 401
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 202 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 261
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 262 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 315
>gi|395519580|ref|XP_003763922.1| PREDICTED: nuclear receptor subfamily 4 group A member 2
[Sarcophilus harrisii]
Length = 598
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFTDLPKPDQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|73476629|gb|AAZ76387.1| nuclear receptor subfamily 4 group A member 2 variant TINUR [Rattus
norvegicus]
Length = 535
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 336 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 395
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 396 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 449
>gi|334330009|ref|XP_001365914.2| PREDICTED: nuclear receptor subfamily 4 group A member 2-like
isoform 2 [Monodelphis domestica]
Length = 598
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFTDLPKPDQDLLFESAFLELFVLRLAYRSNPV 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 459 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 512
>gi|332233950|ref|XP_003266171.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 3
[Nomascus leucogenys]
gi|395732380|ref|XP_003776058.1| PREDICTED: nuclear receptor subfamily 4 group A member 2-like
isoform 3 [Pongo abelii]
gi|395846626|ref|XP_003796004.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 3
[Otolemur garnettii]
gi|403258983|ref|XP_003922018.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 3
[Saimiri boliviensis boliviensis]
gi|410035795|ref|XP_003949952.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 [Pan
troglodytes]
gi|426221075|ref|XP_004004737.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 3
[Ovis aries]
gi|426337436|ref|XP_004032712.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 3
[Gorilla gorilla gorilla]
gi|44890728|gb|AAH66890.1| Nuclear receptor subfamily 4, group A, member 2 [Homo sapiens]
gi|158256348|dbj|BAF84145.1| unnamed protein product [Homo sapiens]
Length = 535
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 336 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 395
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 396 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 449
>gi|410897004|ref|XP_003961989.1| PREDICTED: nuclear receptor subfamily 4 group A member 2-like
[Takifugu rubripes]
Length = 459
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/113 (61%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+ IQQFY LLT S+++IR +A+KIPGFSDL K+DQ+LLF+SA LE+FVLRL+YR+ +
Sbjct: 262 QHIQQFYDLLTGSMEIIRGWAEKIPGFSDLPKQDQDLLFESAFLEVFVLRLSYRSNPIEG 321
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KLIFCNGVVL + QC R FG +W++AI+EF SL M IDISAF+C+ AL ++
Sbjct: 322 KLIFCNGVVLHRLQCVRGFG-EWVDAIVEFSSSLQSMSIDISAFSCIAALAMV 373
>gi|397525635|ref|XP_003832765.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 3
[Pan paniscus]
Length = 535
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 336 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 395
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 396 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 449
>gi|402888375|ref|XP_003907539.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 3
[Papio anubis]
Length = 535
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 336 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 395
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 396 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 449
>gi|410968685|ref|XP_003990832.1| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 2
[Felis catus]
Length = 535
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 336 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 395
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 396 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 449
>gi|390464493|ref|XP_002749476.2| PREDICTED: nuclear receptor subfamily 4 group A member 2 isoform 1
[Callithrix jacchus]
Length = 535
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 336 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 395
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 396 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 449
>gi|164698468|ref|NP_001106956.1| nuclear receptor subfamily 4 group A member 2 [Danio rerio]
gi|157284431|gb|ABV31068.1| nuclear orphan receptor Nr4a2a [Danio rerio]
Length = 598
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 92/115 (80%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 399 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFTDLPKPDQDLLFESAFLELFVLRLAYRSNPM 458
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
++KLIFCNGVVL + QC R FG +W+++I+EF +L M +DISAF+C+ AL ++
Sbjct: 459 ESKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNLDISAFSCIAALAMV 512
>gi|34194087|gb|AAH08218.1| ESRRG protein, partial [Homo sapiens]
Length = 343
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 153/329 (46%), Gaps = 60/329 (18%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 48 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 107
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 108 CGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLK 167
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ 165
VGM+KE VR D ++G GR K + E+ P L P + +P K
Sbjct: 168 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPY---------------LNPQLVQPAK-- 208
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
+ Y+ + + + V A E Y P+P P ++ + +
Sbjct: 209 KPYNKIVSHLLV-------------------------AEPEKIYAMPDPTVPD-SDIKAL 242
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
L + VI +A IPGFS L DQ L QSA +E+ +L + YR+ + + +L+
Sbjct: 243 TTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELV 302
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQ 314
+ + ++++ Q + + D NAIL+ +
Sbjct: 303 YADDYIMDEDQSKLAGLLDLNNAILQLVK 331
>gi|47230214|emb|CAG10628.1| unnamed protein product [Tetraodon nigroviridis]
Length = 437
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 142/296 (47%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 103 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 162
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + E+ P ++L P P + P+
Sbjct: 163 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRLDTENNPYLGLTL-------PPPTKKPL 213
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 214 TK----------------IVSHLLVAEP-------------------EKIYAMPDPTMPE 238
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + VI +A IPGFS L DQ L QSA +E+ +L + +R+
Sbjct: 239 -SDIKALTTLCDLADRELVVIIGWAKHIPGFSSLSLGDQMSLLQSAWMEILILSIVFRSL 297
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +L++ +++++ + + D +IL+ + ++++ F L A+ L
Sbjct: 298 PYEDELVYAEDYIMDEEHSRLTGLLDLYVSILQLVRKFKKLKVEKEEFVTLKAIAL 353
>gi|82504025|gb|ABB80452.1| estrogen receptor-related receptor beta b [Fundulus heteroclitus]
Length = 477
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 142/296 (47%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 143 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 202
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + E+ P ++L P P + P+
Sbjct: 203 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRLDTENNPYLGLTL-------PPPTKKPL 253
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 254 TK----------------IVSHLLVAEP-------------------EKIYAMPDPTMPE 278
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + VI +A IPGFS L DQ L QSA +E+ +L + +R+
Sbjct: 279 -SDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLGDQMSLLQSAWMEILILSIVFRSL 337
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +L++ +++++ + + D +IL+ + ++++ F L A+ L
Sbjct: 338 PYEDELVYAEDYIMDEEHSRLTGLLDLYVSILQLVRKYKKLKVEKEEFVTLKAIAL 393
>gi|348531377|ref|XP_003453186.1| PREDICTED: steroid hormone receptor ERR2-like [Oreochromis
niloticus]
Length = 494
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 142/296 (47%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 160 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 219
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + E+ P ++L P P + P+
Sbjct: 220 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRLDTENNPYLGLTL-------PPPTKKPL 270
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 271 TK----------------IVSHLLVAEP-------------------EKIYAMPDPTMPE 295
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + VI +A IPGFS L DQ L QSA +E+ +L + +R+
Sbjct: 296 -SDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLGDQMSLLQSAWMEILILSIVFRSL 354
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +L++ +++++ + + D +IL+ + ++++ F L A+ L
Sbjct: 355 PYEDELVYAEDYIMDEEHSRLTGLLDLYVSILQLVRKYKKLKVEKEEFVTLKAIAL 410
>gi|3335518|gb|AAC39899.1| estrogen-related receptor gamma [Homo sapiens]
Length = 436
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 109/352 (30%), Positives = 159/352 (45%), Gaps = 66/352 (18%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS----------PSQLCAV 45
T G + +SP L SAP+ S C ++ P P +LC V
Sbjct: 48 TMNGHQNGLDSPPLYPSAPILGGSGPVRKLYDDCSSTIVEDPQTKCEYMLNSMPKRLCLV 107
Query: 46 CGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQ 105
CGDIA+ HYGV +CE CK FKR +Q +Y C A C + KRRR CQ CRF KCL+
Sbjct: 108 CGDIASGYHYGVASCEACKASFKRKIQANIEYSCPATNECEITKRRRKSCQACRFMKCLK 167
Query: 106 VGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP--IAEPEK 163
VGM+KE VR D ++G GR K + E+ P L+ + N + +AEPEK
Sbjct: 168 VGMLKEGVRLDRVRG--GRQKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVAEPEK 225
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCK-EDQELLFQSASLELFYREPNPLEPPIAEP 222
I Y++ +V I + LC D+EL+
Sbjct: 226 I---YAMPDPTVP-----DSDIKALTTLCDCADRELV----------------------- 254
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
VI +A IPGFS L DQ L QSA +E+ +L YR+ + +
Sbjct: 255 ---------------VIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGFVYRSLSFED 299
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L++ + ++++ Q + + D NAIL+ + M+++ F L A+ L
Sbjct: 300 ELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 351
>gi|315258681|dbj|BAJ46223.1| nuclear receptor subfamily 4, group A, member 2 [Heterocephalus
glaber]
Length = 207
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 30 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 89
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 90 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 143
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 48/65 (73%), Gaps = 6/65 (9%)
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF-----YREPNP 214
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELF YR NP
Sbjct: 30 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYR-SNP 88
Query: 215 LEPPI 219
+E +
Sbjct: 89 VEGKL 93
>gi|157278575|ref|NP_001098388.1| estrogen-related receptor beta type 1 [Oryzias latipes]
gi|146395238|gb|ABQ24186.1| estrogen-related receptor beta type 1 [Oryzias latipes]
Length = 433
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 142/296 (47%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + E+ P ++L P P + P+
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRLDSENNPYLGLTL-------PPPTKKPL 209
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 210 TK----------------IVSHLLVAEP-------------------EKIYAMPDPTMPE 234
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + VI +A IPGFS L DQ L QSA +E+ +L + +R+
Sbjct: 235 -SDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLGDQMSLLQSAWMEILILSIVFRSL 293
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +L++ +++++ + + D +IL+ + ++++ F L A+ L
Sbjct: 294 PYEDELVYAEDYIMDEEHSRLTGLLDLYVSILQLVRKYKKLKVEKEEFVTLKAIAL 349
>gi|410916275|ref|XP_003971612.1| PREDICTED: estrogen-related receptor gamma-like [Takifugu rubripes]
Length = 438
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 140/294 (47%), Gaps = 38/294 (12%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF
Sbjct: 99 RLCLVCGDVASGYHYGVASCEACKAFFKRTIQGNIEYSCPASNECEITKRRRKSCQACRF 158
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
KCL VGM++E VR D ++G GR K + E+ P L P A
Sbjct: 159 VKCLAVGMLREGVRLDRVRG--GRQKYKRRIDAENSPY---------------LHPQNAL 201
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
P+K KI S + + + A E + P+P P +
Sbjct: 202 PQK--------------------KILTVSHVLENKVVSVLLVAEPEGIFAMPDPTVPE-S 240
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + + L + V +A IPGF L DQ L QSA +E+ +LR+ +R+
Sbjct: 241 DIKALTTLCDLADRELVVNIGWAKHIPGFPSLSLADQMSLLQSAWMEILILRVVFRSLGL 300
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ KL++ V++++Q + + D N IL+ + +M ++ F L A+ L
Sbjct: 301 EDKLVYAEDYVMDEEQSRLAGLLDLNNTILQLVKKFKVMGLEKEEFVLLKAIAL 354
>gi|290566743|gb|ADD39721.1| estrogen-related receptor beta [Larimichthys crocea]
Length = 433
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 142/296 (47%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + E+ P ++L P P + P+
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRLDSENNPYLGLTL-------PPPTKKPL 209
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 210 TK----------------IVSHLLVAEP-------------------EKIYAMPDPTMPE 234
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + VI +A IPGFS L DQ L QSA +E+ +L + +R+
Sbjct: 235 -SDIKALTTLCDLADRELVVIIGWAKHIPGFSSLSLGDQMSLLQSAWMEILILSIVFRSL 293
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +L++ +++++ + + D +IL+ + ++++ F L A+ L
Sbjct: 294 PYEDELVYAEDYIMDEEHSRLTGLLDLYVSILQLVRKCKKLKVEKEEFVTLKAIAL 349
>gi|380799981|gb|AFE71866.1| nuclear receptor subfamily 4 group A member 2, partial [Macaca
mulatta]
Length = 317
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 118 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 177
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 178 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 231
>gi|354481288|ref|XP_003502834.1| PREDICTED: steroid hormone receptor ERR2-like [Cricetulus griseus]
Length = 506
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 140/302 (46%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 172 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 231
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 232 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSENSPYLSL---------QISPPA 278
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL--E 216
+P KI + L EP+ L
Sbjct: 279 KKP--------------------MTKIVSY------------------LLVAEPDKLYAM 300
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGF +L DQ L QSA +E+ +L
Sbjct: 301 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFLNLSLGDQMSLLQSAWMEILILG 360
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ L AL
Sbjct: 361 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKRLKVEKEEIVTLKAL 420
Query: 333 TL 334
L
Sbjct: 421 AL 422
>gi|449507805|ref|XP_004175253.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 4 group
A member 2 [Taeniopygia guttata]
Length = 493
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 90/113 (79%), Gaps = 1/113 (0%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+ IQQFY LLT S+++IR +A+KIPGF++L K DQ+LLF+SA LELFVLRLAYR+ +
Sbjct: 296 QHIQQFYDLLTGSMEIIRGWAEKIPGFTELPKTDQDLLFESAFLELFVLRLAYRSNPVEG 355
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 356 KLIFCNGVVLHRLQCIRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 407
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 109/197 (55%), Gaps = 54/197 (27%)
Query: 30 DTSRPTPPS---PSQ--LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKA 84
D+ P+PPS P+ LCAVCGD AACQH+GVRTCEGCKGF KRTVQ +KYVCLA+
Sbjct: 202 DSQVPSPPSRGSPANEGLCAVCGDNAACQHFGVRTCEGCKGFLKRTVQCFAKYVCLANMN 261
Query: 85 CPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI 144
CPV R R F F+K P + +P+
Sbjct: 262 CPVFLGRPFR--FHAFKK---------------------EFPVQKNNPE----------- 287
Query: 145 TALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 204
Y+ + + IQQFY LLT S+++IR +A+KIPGF++L K DQ+LLF+SA
Sbjct: 288 ---YQMSG------DDTQHIQQFYDLLTGSMEIIRGWAEKIPGFTELPKTDQDLLFESAF 338
Query: 205 LELF-----YREPNPLE 216
LELF YR NP+E
Sbjct: 339 LELFVLRLAYRS-NPVE 354
>gi|326935636|ref|XP_003213874.1| PREDICTED: nuclear receptor subfamily 4 group A member 2-like
[Meleagris gallopavo]
Length = 216
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 17 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFTDLPKTDQDLLFESAFLELFVLRLAYRSNPV 76
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 77 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 130
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 47/62 (75%), Gaps = 6/62 (9%)
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF-----YREPNP 214
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELF YR NP
Sbjct: 17 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFTDLPKTDQDLLFESAFLELFVLRLAYRS-NP 75
Query: 215 LE 216
+E
Sbjct: 76 VE 77
>gi|291244718|ref|XP_002742241.1| PREDICTED: retinoic acid receptor, beta-like [Saccoglossus
kowalevskii]
Length = 645
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 140/311 (45%), Gaps = 56/311 (18%)
Query: 25 SSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKA 84
SSP D S P PP + C VC D ++ HYGV +CEGCKGFF+R++QK +Y C ++
Sbjct: 241 SSP--DESTP-PPRIYKPCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMQYTCHREQK 297
Query: 85 CPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI 144
C ++K RNRCQ+CR KC VGM KE VR D K R+ + + + ++
Sbjct: 298 CVINKVTRNRCQYCRLMKCFDVGMSKECVRNDRNKKRKAKHEVTESLEMNTEMEHIMDIV 357
Query: 145 TALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 204
+ E P + P PGF D +LL
Sbjct: 358 IKAHIETFPKDTPK---------------------------PGFK--TGSDTDLLM---- 384
Query: 205 LELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
Q + + ++ ++ FA K+PGF L DQ L ++A
Sbjct: 385 --------------------FQYVTDMSSRAIIMVVEFAKKLPGFLQLTTPDQITLLKAA 424
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDIS 324
LE+ VLR++YR +D + F +G+ L +Q + ++ I +F Q + + +D +
Sbjct: 425 CLEIMVLRISYRFNRDDGSVTFTSGLTLSNKQLKTGGFGTLMDTIGQFAQQISSLNLDDT 484
Query: 325 AFACLCALTLI 335
A L A+ LI
Sbjct: 485 ELALLSAICLI 495
>gi|149025238|gb|EDL81605.1| estrogen-related receptor beta [Rattus norvegicus]
Length = 454
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 141/296 (47%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 120 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 179
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 180 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSENSPYLSL---------QISPPA 226
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+P LT V + L E +L Y P P + P
Sbjct: 227 KKP---------LTKIVSYL------------LVAEPDKL----------YAMP-PDDVP 254
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + + +A IPGFS+L DQ L QSA +E+ +L + YR+
Sbjct: 255 EGDIKALTTLCDLADRELVFLISWAKHIPGFSNLTLGDQMSLLQSAWMEILILGIVYRSL 314
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D KL + +++++ + + AIL+ + ++++ F L AL L
Sbjct: 315 PYDDKLAYAEDYIMDEEHSRLVGLLELYRAILQLVRRYKKLKVEKEEFVMLKALAL 370
>gi|82524848|ref|NP_001008516.2| steroid hormone receptor ERR2 [Rattus norvegicus]
gi|119561|sp|P11475.1|ERR2_RAT RecName: Full=Steroid hormone receptor ERR2; AltName: Full=Estrogen
receptor-like 2; AltName: Full=Estrogen-related receptor
beta; Short=ERR-beta; AltName: Full=Nuclear receptor
subfamily 3 group B member 2
gi|88645|pir||B29345 steroid hormone receptor ERR2 precursor - human
gi|36611|emb|CAA35779.1| unnamed protein product [Homo sapiens]
gi|40781637|gb|AAR89824.1| estrogen receptor-related receptor beta [Rattus norvegicus]
gi|225890|prf||1402310B cryptic steroid hormone receptor 2
Length = 433
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 141/296 (47%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 99 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 158
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 159 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSENSPYLSL---------QISPPA 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+P LT V + L E +L Y P P + P
Sbjct: 206 KKP---------LTKIVSYL------------LVAEPDKL----------YAMP-PDDVP 233
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + + +A IPGFS+L DQ L QSA +E+ +L + YR+
Sbjct: 234 EGDIKALTTLCDLADRELVFLISWAKHIPGFSNLTLGDQMSLLQSAWMEILILGIVYRSL 293
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D KL + +++++ + + AIL+ + ++++ F L AL L
Sbjct: 294 PYDDKLAYAEDYIMDEEHSRLVGLLELYRAILQLVRRYKKLKVEKEEFVMLKALAL 349
>gi|260836451|ref|XP_002613219.1| hypothetical protein BRAFLDRAFT_57999 [Branchiostoma floridae]
gi|229298604|gb|EEN69228.1| hypothetical protein BRAFLDRAFT_57999 [Branchiostoma floridae]
Length = 399
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 157/351 (44%), Gaps = 62/351 (17%)
Query: 2 QLGRSSSSESPKLRHSAPLSSASSSPGCDTSRPTP------PSPSQLCAVCGDIAACQHY 55
Q G +SS E R+ + SS + G R P +LC VCGD+A+ HY
Sbjct: 2 QNGHNSSDEEN--RYDSNSSSEILTNGAAEDRMMKCEYMLHSLPKRLCLVCGDVASGFHY 59
Query: 56 GVRTCEGCKGFFKRTVQ-----------KGSKYVCLADKACPVDKRRRNRCQFCRFQKCL 104
GV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL
Sbjct: 60 GVASCEACKAFFKRTIQGKSSSSYIYIISNIEYSCPATNECEITKRRRKSCQACRFTKCL 119
Query: 105 QVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKI 164
+VGM+KE VR D ++G R K K ++ PS V AL + P P+ +
Sbjct: 120 KVGMLKEGVRLDRVRGGR----QKYKRKIDADPSSYVQQAPALKK---PSNGPVNK---- 168
Query: 165 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEK 224
++ H P E Y P+P P +E +
Sbjct: 169 ------------IVAHLMVAEP-------------------EKLYAMPDPTTPD-SELKT 196
Query: 225 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKL 284
+ L + VI +A IPGFS+L DQ L QS +E+ +L LA+R+ D++L
Sbjct: 197 LTTLCDLADRELVVIIGWAKHIPGFSNLSLSDQMSLLQSGWMEILILGLAFRSLHYDSRL 256
Query: 285 IFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+F +++++Q + + ++ IL L + ++ F L A+ L+
Sbjct: 257 VFAEDYIIDEEQSRAAGLEELSRHILRLVGRLKALGVEKEEFVVLKAMALL 307
>gi|159795378|pdb|2QW4|A Chain A, Human Nr4a1 Ligand-Binding Domain
gi|159795379|pdb|2QW4|B Chain B, Human Nr4a1 Ligand-Binding Domain
gi|159795380|pdb|2QW4|C Chain C, Human Nr4a1 Ligand-Binding Domain
gi|159795381|pdb|2QW4|D Chain D, Human Nr4a1 Ligand-Binding Domain
Length = 273
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 121/215 (56%), Gaps = 51/215 (23%)
Query: 123 GRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE--KIQQFYSLLTTSVDVIRH 180
GRLPSKPK P P + P +L+T+L R P A+ + K Q+ V+ H
Sbjct: 22 GRLPSKPKQP---PDASPANLLTSLVRAHLDSGPSTAKLDYSKFQEL---------VLPH 69
Query: 181 FADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIR 240
F KED +QQFY LL+ S++VIR
Sbjct: 70 FG----------KEDAG--------------------------DVQQFYDLLSGSLEVIR 93
Query: 241 HFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS 300
+A+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R
Sbjct: 94 KWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARG 153
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
FG DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 154 FG-DWIDSILAFSRSLHSLLVDVPAFACLSALVLI 187
>gi|45479148|gb|AAS66635.1| estrogen-related receptor beta [Danio rerio]
Length = 340
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 141/296 (47%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 6 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 65
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + E+ ++L P P + P+
Sbjct: 66 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRMDAENTAYLGLTL-------PPPAKKPL 116
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 117 TK----------------IVSHLLVAEP-------------------EKIYAMPDPTMPE 141
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++ + + L + VI +A IPGFS L DQ L QSA +E+ +L + +R+
Sbjct: 142 -SDIKALTTLCDLADRELVVIIGWAKHIPGFSSLSLGDQMSLLQSAWMEILILSIVFRSL 200
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +L++ V++++ + + D +IL+ + ++++ F L A+ L
Sbjct: 201 PYEDELVYAEDYVMDEEHSRLTGLLDLYLSILQLVRKYKKLKVEKEEFVTLKAIAL 256
>gi|348506580|ref|XP_003440836.1| PREDICTED: estrogen-related receptor gamma-like [Oreochromis
niloticus]
Length = 440
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 138/294 (46%), Gaps = 38/294 (12%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF
Sbjct: 101 RLCLVCGDVASGYHYGVASCEACKAFFKRTIQGNIEYSCPASNECEITKRRRKSCQACRF 160
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
KCL VGM++E VR D ++G GR K + E+ P L P A
Sbjct: 161 VKCLAVGMLREGVRLDRVRG--GRQKYKRRIDAENSPY---------------LHPQNAL 203
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
P+K K + + L A E + P+P P +
Sbjct: 204 PQK--------------------KTFSVGGVVENKVVSLLLVAEPEGIFAMPDPTVPE-S 242
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + + L + V +A IPGF L DQ L QS +E+ +LR+ +R+ A
Sbjct: 243 DIKALTTLCDLADRELVVNIGWAKHIPGFPSLSLADQMSLLQSGWMEILILRVVFRSLAL 302
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ KL++ +++++Q + + D NAIL+ + M ++ F L A+ L
Sbjct: 303 EDKLVYAEDYIMDEEQSKLAGLLDLNNAILQLVKKYKAMGLEKEEFVVLKAIAL 356
>gi|17827179|dbj|BAB79436.1| estrogen receptor [Caiman crocodilus]
Length = 587
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 138/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 176 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 235
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K +E + TA R P P+
Sbjct: 236 LRKCYEVGMMKGGIRKD----RRGGRMLKQKRQREEQDARNGETATAEMRTPTLWTSPL- 290
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
VI+H P S L E A + Y E +P P
Sbjct: 291 -----------------VIKHTKKNSPALS-LTAEQMVSALLEAEPPIVYSEYDP-NRPF 331
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 332 NEASMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 391
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 392 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATAARFRMMNLQGEEFVCLKSIILL 448
>gi|410962701|ref|XP_003987907.1| PREDICTED: steroid hormone receptor ERR2 isoform 3 [Felis catus]
Length = 353
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 141/302 (46%), Gaps = 44/302 (14%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 6 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 65
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + ES P Y EP P
Sbjct: 66 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRLDSESSP----------YPEPLQAPPRP 113
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
P F L ++ + L EP+ L
Sbjct: 114 LPPPPTFTFLLWLLAVTKIVSY--------------------------LLVAEPDKLYAM 147
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 148 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 207
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ + KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 208 IVYRSLPYEDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 267
Query: 333 TL 334
L
Sbjct: 268 AL 269
>gi|76667598|dbj|BAE45626.1| estrogen receptor alpha [Crocodylus niloticus]
Length = 587
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 138/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 176 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 235
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K +E + TA R P P+
Sbjct: 236 LRKCYEVGMMKGGIRKD----RRGGRMLKQKRQREEQDARNGETATADMRTPTLWTSPL- 290
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
VI+H P S L E A + Y E +P P
Sbjct: 291 -----------------VIKHTKKNSPALS-LTAEQMVSALLEAEPPIVYSEYDP-NRPF 331
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 332 NEASMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 391
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 392 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATAARFRMMNLQGEEFVCLKSIILL 448
>gi|41386649|dbj|BAD08348.1| estrogen receptor a [Alligator mississippiensis]
Length = 587
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 154/333 (46%), Gaps = 32/333 (9%)
Query: 4 GRSSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
G S +S + R S+ +S +S ++++ T + CAVC D A+ HYGV +CEGC
Sbjct: 147 GADSRRQSGRERMSS--TSEKTSLSMESTKET-----RYCAVCNDYASGYHYGVWSCEGC 199
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
K FFKR++Q + Y+C A C +DK RR CQ CR +KC +VGM+K +R D RRG
Sbjct: 200 KAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKD----RRG 255
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
K K +E + TA R P P+ VI+H
Sbjct: 256 GRMLKQKRQREEQDARNGETATAEMRTPTLWTSPL------------------VIKHTKK 297
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
P S L E A + Y E +P P E + +L + + ++A
Sbjct: 298 NSPALS-LTAEQMVSALLEAEPPIVYSEYDP-NRPFNEASMMTLLTNLADRELVHMINWA 355
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
++PGF DL DQ L + A LE+ ++ L +R+ KL+F ++L++ Q + G
Sbjct: 356 KRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSVEHPGKLLFAPNLLLDRNQGKCVEGM 415
Query: 304 -DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + +L +M + F CL ++ L+
Sbjct: 416 VEIFDMLLATAARFRMMNLQGEEFVCLKSIILL 448
>gi|71040954|gb|AAZ20368.1| RXRa nuclear hormone receptor [Gecarcinus lateralis]
Length = 436
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 145/302 (48%), Gaps = 36/302 (11%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C +++C +DKR+RNRCQ+CR+
Sbjct: 70 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRY 129
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPS-KPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
QKCL +GM +E V+ +++G R R K ES + A RE PI
Sbjct: 130 QKCLTMGMKREAVQVGAVEGERQRTKGDKGDGDTESSCGAISDMPIASIREAELSVDPID 189
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
E Q +R P S+ C L F AS E P
Sbjct: 190 EQPLDQG-----------VRLQVPLAPPDSEKCS--FTLPFHPAS-----------EVPC 225
Query: 220 AEPEKIQQFYSLLTTSVDVIRH------FADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
A P +Q S + + D RH +A IP F+DL EDQ +L ++ EL +
Sbjct: 226 ANP--LQDVVSNICQAAD--RHLVQLVEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASF 281
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQC-QRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
++R+ + ++ G+V+ + Q G + + E + M+ID + CL ++
Sbjct: 282 SHRSMGVEDGIVLATGLVIHRSSAHQAGVGAIFDRVLSELVAKMKEMKIDKTELGCLRSI 341
Query: 333 TL 334
L
Sbjct: 342 VL 343
>gi|443690966|gb|ELT92951.1| hypothetical protein CAPTEDRAFT_224945 [Capitella teleta]
Length = 445
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 142/298 (47%), Gaps = 35/298 (11%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101
+C VCGD + HY V TCEGCKGFFKRTVQK Y C + C V+K RN CQ CRFQ
Sbjct: 97 VCLVCGDKGSGFHYSVYTCEGCKGFFKRTVQKNLNYCCKENGMCVVNKFTRNSCQCCRFQ 156
Query: 102 KCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEP 161
KC++VGM +E VR D G + R K P R +E ++
Sbjct: 157 KCIEVGMKREAVREDRSPGGKHR----HKRP----------------RVEGSMEDSDSQT 196
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAE 221
I Q L + IP S L ED++L+ Q L P+ L P + +
Sbjct: 197 YIINQGSVLSNSPPSGPPSMV--IP--SSLLPEDEDLISQ-----LIEARPD-LTPNLDQ 246
Query: 222 PEK----IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
E+ I + +I +A K+PGF L EDQ L +++ +EL V RLAYR+
Sbjct: 247 AEENKFDINNLMQFGYMELRLIIEWARKVPGFPSLLIEDQMALLKASFMELNVFRLAYRS 306
Query: 278 RAEDTKLIFCNGVVLEKQQCQR-SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ + F GV+L + +G D + EF Q L ++ID + F L A+ L
Sbjct: 307 LEFESGIKFAKGVILTGDESLNIGWGKDLIMFTGEFVQRLKEVQIDHTEFCLLNAIIL 364
>gi|31615923|pdb|1OVL|A Chain A, Crystal Structure Of Nurr1 Lbd
gi|31615926|pdb|1OVL|D Chain D, Crystal Structure Of Nurr1 Lbd
Length = 271
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 72 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 131
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L IDISAF+C+ AL +
Sbjct: 132 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNXNIDISAFSCIAALAXV 185
>gi|300676827|gb|ADK26703.1| estrogen receptor 1 [Zonotrichia albicollis]
Length = 587
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 150/331 (45%), Gaps = 30/331 (9%)
Query: 6 SSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKG 65
SS + +R SS S ++++ T + CAVC D A+ HYGV +CEGCK
Sbjct: 145 SSDNRRHSIRERMSSSSEKGSLAMESTKET-----RYCAVCNDYASGYHYGVWSCEGCKA 199
Query: 66 FFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRL 125
FFKR++Q + Y+C A C +DK RR CQ CR +KC +VGM+K +R D RRG
Sbjct: 200 FFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKD----RRGGR 255
Query: 126 PSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
K K +E S + R P L TS V++H
Sbjct: 256 VMKQKRQREEQDSRNGEASSTELRAPT------------------LWTSPLVVKHNKKNS 297
Query: 186 PGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 245
P S L E A L Y E +P P E + +L + + ++A +
Sbjct: 298 PALS-LTAEQMVSALLEAEPPLVYSEYDP-NRPFNEASMMTLLTNLADRELVHMINWAKR 355
Query: 246 IPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-D 304
+PGF DL DQ L + A LE+ ++ L +R+ KL+F ++L++ Q + G +
Sbjct: 356 VPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVE 415
Query: 305 WLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ +L +M + F CL ++ L+
Sbjct: 416 IFDMLLATAARFRMMNLQGEEFVCLKSIILL 446
>gi|300676917|gb|ADK26789.1| estrogen receptor 1 [Zonotrichia albicollis]
Length = 587
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 150/331 (45%), Gaps = 30/331 (9%)
Query: 6 SSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKG 65
SS + +R SS S ++++ T + CAVC D A+ HYGV +CEGCK
Sbjct: 145 SSDNRRHSIRERMSSSSEKGSLAMESTKET-----RYCAVCNDYASGYHYGVWSCEGCKA 199
Query: 66 FFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRL 125
FFKR++Q + Y+C A C +DK RR CQ CR +KC +VGM+K +R D RRG
Sbjct: 200 FFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKD----RRGGR 255
Query: 126 PSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
K K +E S + R P L TS V++H
Sbjct: 256 VMKQKRQREEQDSRNGEASSTELRAPT------------------LWTSPLVVKHNKKNS 297
Query: 186 PGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 245
P S L E A L Y E +P P E + +L + + ++A +
Sbjct: 298 PALS-LTAEQMVSALLEAEPPLVYSEYDP-NRPFNEASMMTLLTNLADRELVHMINWAKR 355
Query: 246 IPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-D 304
+PGF DL DQ L + A LE+ ++ L +R+ KL+F ++L++ Q + G +
Sbjct: 356 VPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVE 415
Query: 305 WLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ +L +M + F CL ++ L+
Sbjct: 416 IFDMLLATAARFRMMNLQGEEFVCLKSIILL 446
>gi|304434494|dbj|BAJ15426.1| estrogen receptor alpha [Elaphe quadrivirgata]
Length = 588
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 144/308 (46%), Gaps = 48/308 (15%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 176 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 235
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K +E P S + + A R PN P+
Sbjct: 236 LRKCYEVGMMKGGIRKD----RRGGRILKHKRQREEPDSRNIGTV-AEARNPNLWPSPL- 289
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+I+H P S DQ + SA LE EPPI
Sbjct: 290 -----------------MIKHSKKNSPALS--LSADQMV---SALLE--------AEPPI 319
Query: 220 AEPE-------KIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLEL 268
E +LLT D + ++A ++PGF DL DQ L + A LE+
Sbjct: 320 VYSEYDPNRSFNEASMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEI 379
Query: 269 FVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISAFA 327
++ L +R+ KL+F ++L++ Q + G + + +L +M + F
Sbjct: 380 LMIGLVWRSVEHPGKLLFAPNLLLDRNQGKCVEGLVEIFDMLLSTSSRFRMMNVQGEEFV 439
Query: 328 CLCALTLI 335
CL ++ L+
Sbjct: 440 CLKSIILL 447
>gi|187468482|emb|CAM97373.1| ecdysone inducible protein 75 [Blattella germanica]
Length = 985
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 154/306 (50%), Gaps = 37/306 (12%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 82 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRL 141
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++ VR GR+P + K+ ++ A+ + N A
Sbjct: 142 KKCIAVGMSRDAVRF-------GRVPKREKA----------RILAAMQQSSNSRSQEKAV 184
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYR---------- 210
+++ LL+T V+R D D +E E + A + Y
Sbjct: 185 AAELEDEQRLLST---VVRAHLDTC----DFTREKVEPMLARARDQPSYTACPPTLACPL 237
Query: 211 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFV 270
PNP +P + E +Q F + ++ + FA +IPGF+ L ++DQ L ++ E+ +
Sbjct: 238 NPNP-QPLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGFALLPQDDQVTLLKAGVFEVLL 296
Query: 271 LRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWL-NAILEFCQSLHLMEIDISAFACL 329
+RLA A+ +I NG VL+++ S +L +++ +F + L+ + + +
Sbjct: 297 VRLACMFDAQTNSMICLNGQVLKREAIHNSSNARFLMDSMFDFAERLNSLRLSDAEVGLF 356
Query: 330 CALTLI 335
C++ +I
Sbjct: 357 CSVVVI 362
>gi|913967|gb|AAB33999.1| NGFI-B/nur77 beta-type transcription factor homolog [Homo sapiens]
Length = 535
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 336 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 395
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIF NG VL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 396 EGKLIFWNGWVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 449
>gi|31615924|pdb|1OVL|B Chain B, Crystal Structure Of Nurr1 Lbd
gi|31615925|pdb|1OVL|C Chain C, Crystal Structure Of Nurr1 Lbd
gi|31615927|pdb|1OVL|E Chain E, Crystal Structure Of Nurr1 Lbd
gi|31615928|pdb|1OVL|F Chain F, Crystal Structure Of Nurr1 Lbd
Length = 271
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S ++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 72 DTQHIQQFYDLLTGSXEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 131
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L IDISAF+C+ AL +
Sbjct: 132 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNXNIDISAFSCIAALAXV 185
>gi|1706576|sp|P49883.1|ECR_MANSE RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone
receptor; Short=20E receptor; AltName: Full=EcRH;
AltName: Full=Ecdysteroid receptor; AltName:
Full=Nuclear receptor subfamily 1 group H member 1
gi|642054|gb|AAA86699.1| ecdysone receptor homologue [Manduca sexta]
Length = 556
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 152/342 (44%), Gaps = 36/342 (10%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 116 LSPASSINGCSTDGEPRRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 175
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV----------RTDSLKGR 121
K + Y+C AC +D R +CQ CR +KCL VGM E V R +
Sbjct: 176 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPESTCKNKRREKEAQRE 235
Query: 122 RGRLP--------SKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTT 173
+ +LP P Q PP P + I + P L + E +++ L
Sbjct: 236 KDKLPVSTTTVDDHMPAIMQCDPPPPEAARIHEVV--PRFLTEKLMEQNRLKNVTPLSAN 293
Query: 174 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLT 233
+I G+ +ED + + Q+ LE E + +Q +
Sbjct: 294 QKSLIARLVWYQEGYEQPSEEDLKRVTQTWQLEEEEEEETDM--------PFRQITEMTI 345
Query: 234 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLE 293
+V +I FA +PGFS + + DQ L +++S E+ +LR+A R A ++F N
Sbjct: 346 LTVQLIVEFAKGLPGFSKISQSDQITLLKASSSEVMMLRVARRYDAATDSVLFANNQAYT 405
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ +++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 406 RDNYRKAGMSYVIEDLLHFCRCMYSMSMDNVHYALLTAIVIF 447
>gi|82504023|gb|ABB80451.1| estrogen receptor-related receptor beta a [Fundulus heteroclitus]
Length = 435
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 139/296 (46%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 101 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 160
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + E+ ++L P P + P+
Sbjct: 161 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRLDAENGSYLGLTL-------PPPAKKPL 211
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 212 TK----------------IVSHLLVVEP-------------------EKIYAMPDPTMPD 236
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + VI +A IPGFS L DQ L QSA +E+ VL + +R+
Sbjct: 237 -GDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILVLSIVFRSL 295
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ ++++ V++++Q + S D AIL + + ++ F L A+ L
Sbjct: 296 PCEDEIVYAEDYVVDEEQARISGLPDLHVAILPLVRRYKKLRMEKEEFVTLKAIAL 351
>gi|187468486|emb|CAM97375.1| ecdysone inducible protein 75 [Blattella germanica]
Length = 945
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 154/306 (50%), Gaps = 37/306 (12%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 42 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRL 101
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++ VR GR+P + K+ ++ A+ + N A
Sbjct: 102 KKCIAVGMSRDAVRF-------GRVPKREKA----------RILAAMQQSSNSRSQEKAV 144
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYR---------- 210
+++ LL+T V+R D D +E E + A + Y
Sbjct: 145 AAELEDEQRLLST---VVRAHLDTC----DFTREKVEPMLARARDQPSYTACPPTLACPL 197
Query: 211 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFV 270
PNP +P + E +Q F + ++ + FA +IPGF+ L ++DQ L ++ E+ +
Sbjct: 198 NPNP-QPLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGFALLPQDDQVTLLKAGVFEVLL 256
Query: 271 LRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWL-NAILEFCQSLHLMEIDISAFACL 329
+RLA A+ +I NG VL+++ S +L +++ +F + L+ + + +
Sbjct: 257 VRLACMFDAQTNSMICLNGQVLKREAIHNSSNARFLMDSMFDFAERLNSLRLSDAEVGLF 316
Query: 330 CALTLI 335
C++ +I
Sbjct: 317 CSVVVI 322
>gi|115529272|ref|NP_001070169.1| estrogen receptor [Taeniopygia guttata]
gi|6015119|sp|Q91250.1|ESR1_TAEGU RecName: Full=Estrogen receptor; Short=ER; AltName: Full=ER-alpha;
AltName: Full=Estradiol receptor; AltName: Full=Nuclear
receptor subfamily 3 group A member 1
gi|1449146|gb|AAB81108.1| estrogen receptor [Taeniopygia guttata]
Length = 587
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 174 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 233
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K +E S + R P P+
Sbjct: 234 LRKCYEVGMMKGGIRKD----RRGGRVMKQKRQREEQDSRNGEASSTELRAPTLWASPL- 288
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
V++H P S L E A L Y E +P P
Sbjct: 289 -----------------VVKHNKKNSPALS-LTAEQMVSALLEAEPPLVYSEYDP-NRPF 329
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 330 NEASMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 389
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 390 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATAARFRMMNLQGEEFVCLKSIILL 446
>gi|251823756|ref|NP_001156563.1| estrogen-related receptor beta type 2 [Oryzias latipes]
gi|146395240|gb|ABQ24187.1| estrogen-related receptor beta type 2 [Oryzias latipes]
Length = 431
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 139/296 (46%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 97 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 156
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + E+ +S+ P P + P+
Sbjct: 157 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRLDSENGAYLTLSI-------PPPAKKPL 207
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 208 TK----------------IVSHLLVVEP-------------------EKIYAMPDPTMPD 232
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + VI +A IPGF+ L DQ L QSA +E+ VL + +R+
Sbjct: 233 -GDVKALTTLCDLADRELVVIIGWAKHIPGFATLSLADQMSLLQSAWMEILVLSIVFRSL 291
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D ++++ V++++Q + S D AI+ + + ++ F L A+ L
Sbjct: 292 PCDDEIVYAEDYVVDEEQARISGLLDLHVAIVPLVRRYKKLRMEKEEFVMLKAIAL 347
>gi|91680596|emb|CAJ87513.1| ecdysone inducible protein 75 isoform A [Blattella germanica]
Length = 954
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 154/306 (50%), Gaps = 37/306 (12%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 51 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRL 110
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++ VR GR+P + K+ ++ A+ + N A
Sbjct: 111 KKCIAVGMSRDAVRF-------GRVPKREKA----------RILAAMQQSSNSRSQEKAV 153
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYR---------- 210
+++ LL+T V+R D D +E E + A + Y
Sbjct: 154 AAELEDEQRLLST---VVRAHLDTC----DFTREKVEPMLARARDQPSYTACPPTLACPL 206
Query: 211 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFV 270
PNP +P + E +Q F + ++ + FA +IPGF+ L ++DQ L ++ E+ +
Sbjct: 207 NPNP-QPLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGFALLPQDDQVTLLKAGVFEVLL 265
Query: 271 LRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWL-NAILEFCQSLHLMEIDISAFACL 329
+RLA A+ +I NG VL+++ S +L +++ +F + L+ + + +
Sbjct: 266 VRLACMFDAQTNSMICLNGQVLKREAIHNSSNARFLMDSMFDFAERLNSLRLSDAEVGLF 325
Query: 330 CALTLI 335
C++ +I
Sbjct: 326 CSVVVI 331
>gi|150408766|gb|ABR68645.1| estrogen receptor, partial [Anas platyrhynchos]
Length = 531
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 150/331 (45%), Gaps = 30/331 (9%)
Query: 6 SSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKG 65
SS S +R ++ S ++++ T + CAVC D A+ HYGV +CEGCK
Sbjct: 147 SSDSRRHSIRERMSSTNEKGSLSMESTKET-----RYCAVCNDYASGYHYGVWSCEGCKA 201
Query: 66 FFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRL 125
FFKR++Q + Y+C A C +DK RR CQ CR +KC +VGM+K +R D RRG
Sbjct: 202 FFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKD----RRGGR 257
Query: 126 PSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
K K +E S + R P L TS V++H
Sbjct: 258 MMKQKRQREEQDSRNGEATSTELRAPT------------------LWTSPLVVKHNKKNS 299
Query: 186 PGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 245
P S L E A + Y E +P P E + +L + + ++A +
Sbjct: 300 PALS-LTAEQMVSALLEAEPPIVYSEYDP-NRPFNEASMMTLLTNLADRELVHMINWAKR 357
Query: 246 IPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-D 304
+PGF DL DQ L + A LE+ ++ L +R+ KL+F ++L++ Q + G +
Sbjct: 358 VPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVE 417
Query: 305 WLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ +L +M + F CL ++ L+
Sbjct: 418 IFDMLLATAARFRMMNLQGEEFVCLKSIILL 448
>gi|410974354|ref|XP_003993612.1| PREDICTED: steroid hormone receptor ERR1 isoform 2 [Felis catus]
Length = 413
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 134/296 (45%), Gaps = 46/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P E +PL P+
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRP--------------------EVDPLPFPV 174
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
P + L + + V+ E Y P+P P
Sbjct: 175 PLPTVTAAPVNALVSHLLVVEP-------------------------EKLYAMPDPAGPD 209
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 210 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 268
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 269 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 324
>gi|304434492|dbj|BAJ15425.1| estrogen receptor alpha [Trimeresurus flavoviridis]
Length = 586
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 144/301 (47%), Gaps = 34/301 (11%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 174 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 233
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K +E S V + A R PN P+
Sbjct: 234 LRKCYEVGMMKGGIRKD----RRGGRILKHKRQREEHDSRNVGTV-AEARSPNLWPSPL- 287
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE----LFYREPNPL 215
+I+H P S DQ + SA LE + Y E +P
Sbjct: 288 -----------------MIKHGKKNSPALS--LSVDQMV---SALLEAEPPIVYSEYDP- 324
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
P E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +
Sbjct: 325 NRPFNEASMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVW 384
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ KL+F ++L++ Q + G + + +L +M + F CL ++ L
Sbjct: 385 RSVEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNVQGEEFVCLKSIIL 444
Query: 335 I 335
+
Sbjct: 445 L 445
>gi|215848840|dbj|BAH01723.1| estrogen receptor alpha [Gyps africanus]
Length = 587
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 138/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 174 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 233
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K +E S + R P
Sbjct: 234 LRKCYEVGMMKGGIRKD----RRGGRMMKQKRQREEQDSRNGEASSTDLRAPT------- 282
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
L TS VI+H P S L E A + Y E +P P
Sbjct: 283 -----------LWTSPLVIKHNKKNSPALS-LTAEQMVSALLEAEPPIVYSEYDP-NRPF 329
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 330 NEASMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 389
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 390 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATAARFRMMNLQGEEFVCLKSIILL 446
>gi|189240947|ref|XP_971362.2| PREDICTED: similar to ecdysone inducible protein 75 [Tribolium
castaneum]
Length = 771
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 152/306 (49%), Gaps = 37/306 (12%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 39 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRL 98
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++ VR GR+P + K+ ++ A+ + N A
Sbjct: 99 KKCIAVGMSRDAVRF-------GRVPKREKA----------RILAAMQQSSNSRSLEKAV 141
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYR---------- 210
+++ LL T V+R D D +E E + A + Y
Sbjct: 142 AAELEDEQRLLAT---VVRAHIDTC----DFTREKVEPMLARAREQPSYTACPPTLACPL 194
Query: 211 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFV 270
PNP +P + E +Q F + ++ + FA +IPGFS L ++DQ L ++ E+ +
Sbjct: 195 NPNP-QPLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGFSLLAQDDQVTLLKAGVFEVLL 253
Query: 271 LRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWL-NAILEFCQSLHLMEIDISAFACL 329
+RLA + + +I NG VL++ S +L +++ +F + ++ + + +
Sbjct: 254 VRLACMFDTQTSSMICLNGQVLKRDSIHNSSNARFLMDSMFDFAERMNALRLSDAEIGLF 313
Query: 330 CALTLI 335
C++ +I
Sbjct: 314 CSVVVI 319
>gi|215848844|dbj|BAH01724.1| estrogen receptor alpha [Torgos tracheliotus]
Length = 587
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 174 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 233
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K +E S + R P P+
Sbjct: 234 LRKCYEVGMMKGGIRKD----RRGGRMMKQKRQREEQDSRNGEASSTDLRAPTLWTSPL- 288
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
VI+H P S L E A + Y E +P P
Sbjct: 289 -----------------VIKHNKKNSPALS-LTAEQMVSALLEAEPPIVYSEYDP-NRPF 329
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 330 NEASMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 389
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 390 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATAARFRMMNLQGEEFVCLKSIILL 446
>gi|193885514|gb|ACF28457.1| estrogen receptor alpha [Lepidochelys olivacea]
Length = 588
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 139/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 176 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 235
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K +E + + R P
Sbjct: 236 LRKCYEVGMMKGGIRKD----RRGGRMLKYKRQREEQDARSGGTTSIEMRTPT------- 284
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
L TS VI+H P + L E A + Y E +P P
Sbjct: 285 -----------LWTSPLVIKHSKKNSPALT-LTAEQMVSALLEAEPPIVYSEYDP-NRPF 331
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + SL + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 332 SEASMMTLLTSLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 391
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 392 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATAARFRVMNLQGEEFVCLKSIILL 448
>gi|47224289|emb|CAG09135.1| unnamed protein product [Tetraodon nigroviridis]
Length = 434
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 139/296 (46%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 100 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 159
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + E+ +++ P P + P+
Sbjct: 160 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRLDSENGAYLGLTI-------PPPAKKPL 210
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 211 TK----------------IVSHLLVVEP-------------------EKIYAMPDPTMPD 235
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + VI +A IPGFS L DQ L QSA +E+ VL + +R+
Sbjct: 236 -GDVKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILVLSIVFRSL 294
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ ++++ V++++Q + S D AIL + + ++ F L A+ L
Sbjct: 295 PCEDEIVYAEDYVVDEEQARISGLLDLHVAILPLARRYKKLRMEKEEFVSLKAIAL 350
>gi|408843716|gb|AFU93863.1| estrogen receptor alpha, partial [Pelodiscus sinensis]
Length = 498
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 144/301 (47%), Gaps = 33/301 (10%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 168 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 227
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K +E + + R P
Sbjct: 228 LRKCYEVGMMKGGIRKD----RRGGRMLKHKRQREEQDARSGGTASTEMRTPT------- 276
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE----LFYREPNPL 215
L TS VI+H P + +DQ + SA LE + Y E +P
Sbjct: 277 -----------LWTSPLVIKHSKKNSPALA--LTDDQMV---SALLEAEPPIVYSEYDP- 319
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
P +E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +
Sbjct: 320 NRPFSESSMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVW 379
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ KL+F ++L++ Q + G + + +L +M + F CL ++ L
Sbjct: 380 RSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSARFRMMNLQGEEFVCLKSIIL 439
Query: 335 I 335
+
Sbjct: 440 L 440
>gi|24637392|gb|AAN63674.1|AF442965_1 estrogen receptor alpha [Coturnix japonica]
Length = 589
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 138/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 176 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 235
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K +E S + R P
Sbjct: 236 LRKCYEVGMMKGGIRKD----RRGGRMMKQKRQREEQESRNGEASSTELRAPT------- 284
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
L TS V++H P S L E A + Y E +P P
Sbjct: 285 -----------LWTSPLVVKHNKKNSPALS-LTAEQMVSALLEAEPPIVYSEYDP-NRPF 331
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 332 NEASMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 391
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 392 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATAARFRMMNLQGEEFVCLKSIILL 448
>gi|251823758|ref|NP_001156564.1| estrogen-related receptor gamma type 2 [Oryzias latipes]
gi|146395244|gb|ABQ24189.1| estrogen-related receptor gamma type 2 [Oryzias latipes]
Length = 439
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 161/345 (46%), Gaps = 53/345 (15%)
Query: 2 QLGRSSSSESPKLR-HSAPLSS-ASSSPGCDTSRPT-------PPSPSQLCAVCGDIAAC 52
L S+ +SP L+ H+ L+S S+ C +LC VCGD+A+
Sbjct: 52 NLAHSNGLDSPGLQGHATALASNGGSNRRCGEEEGQVKCEFILGSVAKRLCLVCGDVASG 111
Query: 53 QHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEV 112
HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL VGM++E
Sbjct: 112 YHYGVASCEACKAFFKRTIQGNIEYSCPASNECEITKRRRKSCQACRFVKCLAVGMLREG 171
Query: 113 VRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY-REPNPLEPPIAEPEKIQQFYSLL 171
VR D ++G GR K + E+ +LY NPL P+K + F +
Sbjct: 172 VRLDRVRG--GRQKYKRRIDAEN----------SLYLHSQNPL------PQK-KTFSAGG 212
Query: 172 TTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPE--KIQQFY 229
V+ L A E + P+P+ +AE + +
Sbjct: 213 VVENKVVS-------------------LLLVAEPEAIFAMPDPM---VAESDIKALTTLC 250
Query: 230 SLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNG 289
L + V +A IPGF+ L DQ L QS +E+ +LR+ +R+ A + KL++ +
Sbjct: 251 DLADRELVVNIGWAKHIPGFASLSLADQMSLLQSGWMEILILRVVFRSLAFEDKLVYADD 310
Query: 290 VVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+++++Q + + D NAIL+ + + ++ F L A+ L
Sbjct: 311 YIMDEEQSKLAGLLDLNNAILQLVKKYKSIGLEKEEFVVLKAIAL 355
>gi|326915742|ref|XP_003204172.1| PREDICTED: estrogen receptor-like [Meleagris gallopavo]
Length = 589
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 138/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 176 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 235
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K +E S + R P
Sbjct: 236 LRKCYEVGMMKGGIRKD----RRGGRMMKQKRQREDQDSRNGEASSTELRAPT------- 284
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
L TS V++H P S L E A + Y E +P P
Sbjct: 285 -----------LWTSPLVVKHNKKNSPALS-LTAEQMVSALLEAEPPIVYSEYDP-NRPF 331
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 332 NEASMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 391
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 392 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATAARFRMMNLQGEEFVCLKSIILL 448
>gi|312165966|gb|ADQ38960.1| estrogen receptor alpha [Gallus gallus]
Length = 589
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 138/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 176 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 235
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K +E S + R P
Sbjct: 236 LRKCYEVGMMKGGIRKD----RRGGRMMKQKRQREEQDSRNGEASSTELRAPT------- 284
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
L TS V++H P S L E A + Y E +P P
Sbjct: 285 -----------LWTSPLVVKHNKKNSPALS-LTAEQMVSALLEAEPPIVYSEYDP-NRPF 331
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 332 NEASMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 391
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 392 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATAARFRMMNLQGEEFVCLKSIILL 448
>gi|407907527|gb|AFU48567.1| estrogen receptor alpha [Columba livia]
Length = 587
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 174 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 233
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K +E S + R P P+
Sbjct: 234 LRKCYEVGMMKGGIRKD----RRGGRMMKQKRQREEQDSRNGEASSTELRAPTIWTSPL- 288
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
V++H P S L E A + Y E +P P
Sbjct: 289 -----------------VVKHNKKNSPALS-LTAEQMVSALLEAEPPIVYSEYDP-NRPF 329
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 330 NEASMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 389
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 390 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATAARFRMMNLQGEEFVCLKSIILL 446
>gi|327279825|ref|XP_003224656.1| PREDICTED: nuclear receptor subfamily 4 group A member 2-like
[Anolis carolinensis]
Length = 638
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 439 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFTDLPKPDQDLLFESAFLELFVLRLAYRSNPV 498
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ K IFCNGVVL + QC R FG +W+++I+EF M +DISAF+C+ AL ++
Sbjct: 499 EGKQIFCNGVVLHRLQCVRGFG-EWIDSIVEFSPKKQNMNVDISAFSCIAALAMV 552
>gi|344246751|gb|EGW02855.1| Steroid hormone receptor ERR1 [Cricetulus griseus]
Length = 548
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 134/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 201 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 260
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 261 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 320
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 321 A-----------------LVSHLLVVEP-------------------EKLYAMPDPASPD 344
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 345 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 403
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + D A+L+ + L + ++ + L AL L
Sbjct: 404 PLQDELAFAEDLVLDEEGARAAGLGDLGAALLQLVRRLQALRLEREEYVLLKALAL 459
>gi|268053961|gb|ACY92467.1| AmNR2 nuclear receptor [Saccoglossus kowalevskii]
Length = 409
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 156/348 (44%), Gaps = 44/348 (12%)
Query: 7 SSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGC 63
S E L +S SS S++ + +P + LC VC D + HY V +CEGC
Sbjct: 5 SEQEQSVLSNSPAFSSQSTTHAQNEDSLSPSVTTTTELLCLVCSDKGSGYHYSVFSCEGC 64
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKG--- 120
KGFFKRTVQK KY C + C + K RN CQ CRFQKC+ +GM + VR D G
Sbjct: 65 KGFFKRTVQKQLKYSCKESRNCEITKYSRNSCQSCRFQKCVNMGMKIDAVREDRTPGGKQ 124
Query: 121 --RRGR-----LPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTT 173
+R R LP + + P + TA P +PEK
Sbjct: 125 KIKRSRSHSSSLPVNQSTKKTFPNVSDTNNDTASSSSLTDTNSP--QPEK---------- 172
Query: 174 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEK------IQQ 227
++ SD+ +EDQ +++ + L P+ + P A+ K I
Sbjct: 173 ----------RLKEDSDVSQEDQSKAYETMAELLTAARPDIV--PEAQSFKDMSNFGIDD 220
Query: 228 FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFC 287
+ +I +A +PGF L EDQ L +++ +EL VLRLAYR+R+E+ + F
Sbjct: 221 LMQYGYKELQLIIQWARHVPGFRGLLIEDQMALLKASFMELNVLRLAYRSRSENGLVRFG 280
Query: 288 NGVVLEKQQCQR-SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ L K Q +G + + + L + + + +D F L A+ L
Sbjct: 281 ANMKLTKDQAMEIGWGQELIQSTLNYVSRIQEVNVDHVEFCFLNAIVL 328
>gi|395852578|ref|XP_003798814.1| PREDICTED: steroid hormone receptor ERR1 [Otolemur garnettii]
Length = 506
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 138/296 (46%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 159 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 218
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 219 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFSAGPLAVAGGPRKTAP-- 276
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ L + + V+ +K+ D D L + +LF RE
Sbjct: 277 ---------VNALVSHLLVVE--PEKLYAMPDPAGPDGHLPAVATLCDLFDRE------- 318
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 319 -----------------IVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 361
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 362 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 417
>gi|45383986|ref|NP_990514.1| estrogen receptor [Gallus gallus]
gi|119597|sp|P06212.1|ESR1_CHICK RecName: Full=Estrogen receptor; Short=ER; AltName: Full=ER-alpha;
AltName: Full=Estradiol receptor; AltName: Full=Nuclear
receptor subfamily 3 group A member 1
gi|63380|emb|CAA27433.1| unnamed protein product [Gallus gallus]
Length = 589
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 138/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 176 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 235
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K +E S + R P
Sbjct: 236 LRKCYEVGMMKGGIRKD----RRGGEMMKQKRQREEQDSRNGEASSTELRAPT------- 284
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
L TS V++H P S L E A + Y E +P P
Sbjct: 285 -----------LWTSPLVVKHNKKNSPALS-LTAEQMVSALLEAEPPIVYSEYDP-NRPF 331
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 332 NEASMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 391
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 392 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATAARFRMMNLQGEEFVCLKSIILL 448
>gi|291234849|ref|XP_002737359.1| PREDICTED: nuclear receptor 2 [Saccoglossus kowalevskii]
Length = 410
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 156/348 (44%), Gaps = 44/348 (12%)
Query: 7 SSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGC 63
S E L +S SS S++ + +P + LC VC D + HY V +CEGC
Sbjct: 6 SEQEQSVLSNSPAFSSQSTTHAQNEDSLSPSVTTTTELLCLVCSDKGSGYHYSVFSCEGC 65
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKG--- 120
KGFFKRTVQK KY C + C + K RN CQ CRFQKC+ +GM + VR D G
Sbjct: 66 KGFFKRTVQKQLKYSCKESRNCEITKYSRNSCQSCRFQKCVNMGMKIDAVREDRTPGGKQ 125
Query: 121 --RRGR-----LPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTT 173
+R R LP + + P + TA P +PEK
Sbjct: 126 KIKRSRSHSSSLPVNQSTKKTFPNVSDTNNDTASSSSLTDTNSP--QPEK---------- 173
Query: 174 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEK------IQQ 227
++ SD+ +EDQ +++ + L P+ + P A+ K I
Sbjct: 174 ----------RLKEDSDVSQEDQSKAYETMAELLTAARPDIV--PEAQSFKDMSNFGIDD 221
Query: 228 FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFC 287
+ +I +A +PGF L EDQ L +++ +EL VLRLAYR+R+E+ + F
Sbjct: 222 LMQYGYKELQLIIQWARHVPGFRGLLIEDQMALLKASFMELNVLRLAYRSRSENGLVRFG 281
Query: 288 NGVVLEKQQCQR-SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ L K Q +G + + + L + + + +D F L A+ L
Sbjct: 282 ANMKLTKDQAMEIGWGQELIQSTLNYVSRIQEVNVDHVEFCFLNAIVL 329
>gi|148701313|gb|EDL33260.1| estrogen related receptor, alpha [Mus musculus]
Length = 431
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 134/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 84 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 143
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 144 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 203
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 204 A-----------------LVSHLLVVEP-------------------EKLYAMPDPASPD 227
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 228 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 286
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + D A+L+ + L + ++ + L AL L
Sbjct: 287 PLQDELAFAEDLVLDEEGARAAGLGDLGAALLQLVRRLQALRLEREEYVLLKALAL 342
>gi|218139443|gb|ACK57879.1| ecdysteroid receptor [Anthonomus grandis]
Length = 479
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 159/352 (45%), Gaps = 42/352 (11%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSAS--SSPGCDTSRPTPPSPSQ---LCAVCGDIAACQHY 55
T + +S +S +P SS + S+ CD + P+P Q LC VCGD A+ HY
Sbjct: 85 TIIAKSDTSSMSGREDLSPPSSLNGYSADSCDAKKKKGPTPRQQEELCLVCGDRASGYHY 144
Query: 56 GVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRT 115
TCEGCKGFF+R++ K + Y C C +D R +CQ CR +KCL VGM E V
Sbjct: 145 NALTCEGCKGFFRRSITKNAVYQCKYGNNCDIDMYMRRKCQECRLKKCLTVGMRPECVVP 204
Query: 116 D---SLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLT 172
+ ++K + + + P + P I +EP + +S L+
Sbjct: 205 EPQCAIKRKEKKALKEKDKPNSTTNGSPTGAI--------KIEPEL--------LFSQLS 248
Query: 173 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN----------PLEPPIAEP 222
S +K G + E +EL+ + + Y P+ P+E
Sbjct: 249 ES--------EKSTGVKPISPEQEELIHRLVYFQNEYEHPSEEDVKRILNQPMEDEDQRE 300
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+ + + +V +I FA ++PGF L +EDQ L ++ S E+ + R+A R +
Sbjct: 301 VRFRHITEITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDCQTD 360
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++F N + + + +L FC++++ M++D + +A L A+ +
Sbjct: 361 SILFANNQPYSTDSYNLAGMGETIEDLLHFCRTMYSMKVDNAEYALLTAIVI 412
>gi|348565360|ref|XP_003468471.1| PREDICTED: estrogen receptor-like [Cavia porcellus]
Length = 596
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 136/297 (45%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 183 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYICPATNQCTIDKNRRKSCQACR 242
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC VGM+K +R D GR + + + P + P+PL
Sbjct: 243 LRKCYDVGMIKGGIRKDRRGGRMLKYKRQRDDEERRHEMGPSGDMRGSNLWPSPL----- 297
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
VI+H P S L + A L Y E + ++ P
Sbjct: 298 -----------------VIKHTKKNSPALS-LTADQMVSALMDAEPPLLYSEYDAVK-PF 338
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 339 SEASMMGLLTNLADRELVHMINWAKRVPGFGDLTLHDQVHLLECAWLEILMIGLIWRSME 398
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 399 HPGKLLFAPNLILDRNQGKCVEGMVEIFDMLLATSTRFRMMNLQGEEFVCLKSIILL 455
>gi|291397152|ref|XP_002714993.1| PREDICTED: estrogen receptor alpha-like [Oryctolagus cuniculus]
Length = 598
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 140/297 (47%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 185 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 244
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D GR + + + + P + A P+PL
Sbjct: 245 LRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDGEGRNETGPPGDMRAANLWPSPL----- 299
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+I+H P S + L + A + Y E +P P
Sbjct: 300 -----------------LIKHTKKNSPALSLTADQMVSALLE-AEPPIIYSEYDPTRP-F 340
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 341 SEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 400
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L L +M + F CL ++ L+
Sbjct: 401 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRLRMMNLQGEEFVCLKSIILL 457
>gi|158828574|dbj|BAF91191.1| estrogen receptor alpha [Pseudemys nelsoni]
Length = 587
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 140/297 (47%), Gaps = 26/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 176 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 235
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K +E + T + R P
Sbjct: 236 LRKCYEVGMMKGGIRKD----RRGGRMLKHKRQREEQDARIAGTSTEM-RTPT------- 283
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
L TS VI+H P S L E A + Y E +P P
Sbjct: 284 -----------LWTSPLVIKHSKKNSPALS-LTAEQMVSALLEAEPPIVYSEYDP-NRPF 330
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 331 SEASMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 390
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 391 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATAARFRVMNLQGEEFVCLKSIILL 447
>gi|410974352|ref|XP_003993611.1| PREDICTED: steroid hormone receptor ERR1 isoform 1 [Felis catus]
Length = 422
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 135/297 (45%), Gaps = 39/297 (13%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK-SPQESPPSPPVSLITALYREPNPLEPP 157
RF KCL+VGM+KE VR D ++G R + +P+ P P S P +
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGSFPAGPLAG----------- 183
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
P K +L++ H P E Y P+P P
Sbjct: 184 AGGPRKTAPVNALVS-------HLLVVEP-------------------EKLYAMPDPAGP 217
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 218 DGHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRS 276
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 277 LPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 333
>gi|33391195|gb|AAQ17212.1| estrogen receptor-related receptor alpha [Rattus norvegicus]
Length = 421
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 134/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 194
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 195 A-----------------LVSHLLVVEP-------------------EKLYAMPDPASPD 218
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 219 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 277
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + D A+L+ + L + ++ + L AL L
Sbjct: 278 PLQDELAFAEDLVLDEEGARAAGLGDLGAALLQLVRRLQALRLEREEYVLLKALAL 333
>gi|112293262|ref|NP_031979.2| steroid hormone receptor ERR1 [Mus musculus]
gi|158187524|ref|NP_001008511.2| steroid hormone receptor ERR1 [Rattus norvegicus]
gi|152032433|sp|Q5QJV7.2|ERR1_RAT RecName: Full=Steroid hormone receptor ERR1; AltName:
Full=Estrogen-related receptor alpha; Short=ERR-alpha;
AltName: Full=Nuclear receptor subfamily 3 group B
member 1
gi|341941116|sp|O08580.4|ERR1_MOUSE RecName: Full=Steroid hormone receptor ERR1; AltName: Full=Estrogen
receptor-like 1; AltName: Full=Estrogen-related receptor
alpha; Short=ERR-alpha; AltName: Full=Nuclear receptor
subfamily 3 group B member 1
gi|74224120|dbj|BAE33690.1| unnamed protein product [Mus musculus]
gi|149062202|gb|EDM12625.1| rCG47936 [Rattus norvegicus]
gi|187952941|gb|AAI38587.1| Estrogen related receptor, alpha [Mus musculus]
gi|219521732|gb|AAI71958.1| Estrogen related receptor, alpha [Mus musculus]
Length = 422
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 134/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 194
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 195 A-----------------LVSHLLVVEP-------------------EKLYAMPDPASPD 218
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 219 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 277
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + D A+L+ + L + ++ + L AL L
Sbjct: 278 PLQDELAFAEDLVLDEEGARAAGLGDLGAALLQLVRRLQALRLEREEYVLLKALAL 333
>gi|351702007|gb|EHB04926.1| Steroid hormone receptor ERR1 [Heterocephalus glaber]
Length = 428
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 138/297 (46%), Gaps = 33/297 (11%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P PI
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTVLPI 194
Query: 159 AEPEKIQQFYSLLTTSVD-VIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
A V+ ++ H P E Y P+P P
Sbjct: 195 A------------AAPVNALVSHLLVVEP-------------------EKLYAMPDPAGP 223
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 224 DGHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRS 282
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L ++++ + L AL L
Sbjct: 283 LPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALQLEREEYVLLKALAL 339
>gi|118404594|ref|NP_001072756.1| estrogen-related receptor alpha [Xenopus (Silurana) tropicalis]
gi|116487767|gb|AAI25781.1| estrogen-related receptor alpha [Xenopus (Silurana) tropicalis]
gi|169642644|gb|AAI60530.1| estrogen-related receptor alpha [Xenopus (Silurana) tropicalis]
Length = 408
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 137/303 (45%), Gaps = 52/303 (17%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 66 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGNIEYSCPASNECEITKRRRKACQAC 125
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSP--QESPPSPPVSLITALYREPNPLEP 156
RF KCL+VGM+KE VR D ++G R + +P+ Q + P + ++ P+
Sbjct: 126 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEGEILQYTSGGPAQQASATVVKKQTPVNA 185
Query: 157 PI-----AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYRE 211
+ AEP+K+ FA P D + L A E+
Sbjct: 186 VVSHLLVAEPDKL----------------FAMPDPALPDGYLKSMSTLCDLADREIV--- 226
Query: 212 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVL 271
+I +A IPGFS L DQ L QS +E+ +L
Sbjct: 227 --------------------------IIISWAKNIPGFSSLSLSDQMSLLQSVWMEVLLL 260
Query: 272 RLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
+ +R+ + +++F VL+++ + + D + IL + + ++ + L A
Sbjct: 261 GVVFRSLPYEDEVVFAEDFVLDEESSRSARLTDLCSCILHLVRKYRTLRVEKEEYVMLKA 320
Query: 332 LTL 334
LTL
Sbjct: 321 LTL 323
>gi|61680690|pdb|1YJE|A Chain A, Crystal Structure Of The Rngfi-B Ligand-Binding Domain
Length = 264
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 111/182 (60%), Gaps = 23/182 (12%)
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
++PP A P +LLT+ +IR D P + L FQ L F +E
Sbjct: 20 MQPPDASPT------NLLTS---LIRAHLDSGPNTAKLDYSK----FQELVLPRFGKE-- 64
Query: 214 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
+ +QQFY LL+ S+DVIR +A+KIPGF +L DQ+LL +SA LELF+LRL
Sbjct: 65 -------DAGDVQQFYDLLSGSLDVIRKWAEKIPGFIELSPGDQDLLLESAFLELFILRL 117
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALT 333
AYR++ + KLIFC+G+VL + QC R FG DW++ IL F +SLH + +D+ AFACL AL
Sbjct: 118 AYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDNILAFSRSLHSLGVDVPAFACLSALV 176
Query: 334 LI 335
LI
Sbjct: 177 LI 178
>gi|354498458|ref|XP_003511332.1| PREDICTED: steroid hormone receptor ERR1-like [Cricetulus griseus]
Length = 495
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 134/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 148 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 207
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 208 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 267
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 268 A-----------------LVSHLLVVEP-------------------EKLYAMPDPASPD 291
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 292 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 350
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + D A+L+ + L + ++ + L AL L
Sbjct: 351 PLQDELAFAEDLVLDEEGARAAGLGDLGAALLQLVRRLQALRLEREEYVLLKALAL 406
>gi|75775177|gb|AAI04702.1| Esrra protein, partial [Rattus norvegicus]
Length = 461
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 134/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 114 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 173
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 174 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 233
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 234 A-----------------LVSHLLVVEP-------------------EKLYAMPDPASPD 257
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 258 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 316
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + D A+L+ + L + ++ + L AL L
Sbjct: 317 PLQDELAFAEDLVLDEEGARAAGLGDLGAALLQLVRRLQALRLEREEYVLLKALAL 372
>gi|301762648|ref|XP_002916712.1| PREDICTED: steroid hormone receptor ERR1-like [Ailuropoda
melanoleuca]
gi|281350663|gb|EFB26247.1| hypothetical protein PANDA_004846 [Ailuropoda melanoleuca]
Length = 422
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 135/297 (45%), Gaps = 39/297 (13%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK-SPQESPPSPPVSLITALYREPNPLEPP 157
RF KCL+VGM+KE VR D ++G R + +P+ P P S P +
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGSFPAGPLAV----------- 183
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
P K +L++ H P E Y P+P P
Sbjct: 184 AGGPRKTAPVNALVS-------HLLVVEP-------------------EKLYAMPDPAGP 217
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 218 DGHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRS 276
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 277 LPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 333
>gi|207091397|gb|ACI23369.1| estrogen receptor [Chrysemys picta]
Length = 588
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 138/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 176 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 235
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K +E + + R P
Sbjct: 236 LRKCYEVGMMKGGIRKD----RRGGRMLKHKRQREEQDARIAGTSSTEMRTPT------- 284
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
L TS VI+H P S L E A + Y E +P P
Sbjct: 285 -----------LWTSPLVIKHSKKNSPALS-LTAEQMVSALLEAEPPIVYSEYDP-NRPF 331
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 332 SEASMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 391
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 392 HPGKLSFAPNLLLDRNQGKCVEGMVEIFDMLLATAARFRVMNLQGEEFVCLKSIILL 448
>gi|82504027|gb|ABB80453.1| estrogen receptor-related receptor gamma b [Fundulus heteroclitus]
Length = 439
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 154/341 (45%), Gaps = 48/341 (14%)
Query: 3 LGRSSSSESPKL-RHSAPLSSASSSP---GCDTSRPT-----PPSPSQLCAVCGDIAACQ 53
L ++ ESP L H+A L++ + G D + ++C VCGD+A+
Sbjct: 54 LAHNNGLESPSLCGHTAGLANNGGANRRFGEDEGQVKCEFMLGTVAKRVCLVCGDVASGY 113
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ CRF KCL VGM++E V
Sbjct: 114 HYGVASCEACKAFFKRTIQGNIEYSCPASNECEITKRRRKSCQACRFLKCLAVGMLREGV 173
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTT 173
R D ++G GR K + E+ P L P P+K + F
Sbjct: 174 RLDRVRG--GRQKYKRRIDAENSPY---------------LHPQSGLPQK-KTF------ 209
Query: 174 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLT 233
F D + L A E P+P P ++ + + L
Sbjct: 210 --------------FVDAVENKVVSLLLVAEPESILAMPDPTVPE-SDIKALITLCDLAD 254
Query: 234 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLE 293
+ V +A IPGF L DQ L QS +E+ +LR+ +R+ + KL++ +++
Sbjct: 255 RELVVNIGWAKHIPGFPTLSLADQMSLLQSGWMEILILRVVFRSLTMEDKLVYAEDYIMD 314
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++Q + + D NAIL+ + M ++ F L A+ L
Sbjct: 315 EEQSKLAGLFDLNNAILQLVKKYKSMGLEKEEFVLLKAIAL 355
>gi|410916557|ref|XP_003971753.1| PREDICTED: steroid hormone receptor ERR2-like [Takifugu rubripes]
Length = 441
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 138/296 (46%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 107 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 166
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + E+ +++ P P + P+
Sbjct: 167 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRLDSENGAYLGLTI-------PPPAKKPL 217
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 218 TK----------------IVSHLLVVEP-------------------EKIYAMPDPTMPD 242
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + VI +A IPGFS L DQ L QSA +E+ VL + +R+
Sbjct: 243 -GDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILVLSIVFRSL 301
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ ++++ V++++ + S D AIL + + ++ F L A+ L
Sbjct: 302 PCEEEIVYAEDYVVDEEHARISGLLDLHVAILPLVRRYKKLRMEKEEFVSLKAIAL 357
>gi|192454604|ref|NP_001122150.1| estrogen-related receptor gamma b [Danio rerio]
gi|190337313|gb|AAI63298.1| Estrogen-related receptor gamma b [Danio rerio]
gi|190339730|gb|AAI63306.1| Estrogen-related receptor gamma b [Danio rerio]
Length = 420
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 139/297 (46%), Gaps = 40/297 (13%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C + C + KRRR CQ
Sbjct: 80 GPKRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYSCSVSRDCEITKRRRKSCQA 139
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRF KCL VGM++E VR D ++G R + + S S P+ +R+P
Sbjct: 140 CRFTKCLSVGMLREGVRLDRVRGGRQKYKRRIDSDSSVYLSVPLP-----HRKP------ 188
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
V H +K+ L A E P+P P
Sbjct: 189 -----------------VSCSAHAENKVV-----------TLLLGAEPEKVCAMPDPALP 220
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
++ + + L + + +A IPGFS L DQ L QSA +E+ VLR+A+R+
Sbjct: 221 D-SDIKALTTLCDLADRELVLNISWAKHIPGFSSLSLSDQMSLLQSAWMEILVLRVAFRS 279
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D +L+F + +++ +Q + + + AIL+ + M ++ F L A+ L
Sbjct: 280 LPCDDRLLFADDYIMDAEQAKCAGLLELHTAILQLVRRYRCMSLEREEFVTLKAIAL 336
>gi|118343970|ref|NP_001071806.1| nuclear receptor [Ciona intestinalis]
gi|70571026|dbj|BAE06665.1| nuclear receptor [Ciona intestinalis]
Length = 638
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 134/300 (44%), Gaps = 52/300 (17%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VCGD ++ HYGV +CEGCKGFF+R+VQK +Y C +K C ++K R+RCQ+CR QK
Sbjct: 298 CFVCGDKSSGYHYGVASCEGCKGFFRRSVQKNMQYTCHRNKQCLINKSTRSRCQYCRLQK 357
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C+Q GM++E VR D + + N ++ P PE
Sbjct: 358 CIQAGMLRESVRNDR--------------------NKKRGKEKEGKSDQNGVDEPSCSPE 397
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI--- 219
L TSV + + P S+L K Y+ P+P PI
Sbjct: 398 -----IEALVTSVH--KFHVETFPLSSELKK---------------YQIPSP---PIVKD 432
Query: 220 ----AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
+ ++F L T + I FA IPGF D DQ L + A LE+ LR+
Sbjct: 433 TSAKTDSNLWEKFAELSTKCIVKIVEFAKGIPGFQDFTIADQITLLKCACLEVLFLRICS 492
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R E + F +G+ L ++Q + + F QSLH + D + L A+ L+
Sbjct: 493 RFSPEHDTMTFSDGLTLTRKQMRVCGFGPITEQVFSFAQSLHPLNADATEIGLLSAICLV 552
>gi|151188219|gb|ABR88112.1| estrogen-related receptor [Polyrhachis vicina]
Length = 434
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 140/294 (47%), Gaps = 57/294 (19%)
Query: 4 GRSSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
G + S ESP++ H + + +P D + P +LC VCGD+A+ HYGV +CE C
Sbjct: 71 GSNGSPESPEMHHCSSTTQPLGTPE-DGIKEEDMIPRRLCLVCGDVASGFHYGVASCEAC 129
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
K FFKRT+Q +Y C A+ C ++KR+R CQ CRFQKCL+ GM+KE VR D ++G R
Sbjct: 130 KAFFKRTIQGNIEYTCPANGECEINKRKRKACQACRFQKCLRQGMLKEGVRLDRVRGGR- 188
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA--EPEKIQQFYSLLTTSVDVIRHF 181
K + + P PV T E N L +A EP+ +Q
Sbjct: 189 -----QKYRRSADPYTPVKSATL---EDNKLVEALAACEPDMLQ---------------- 224
Query: 182 ADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH 241
+ S + DQ++L Q + +L+ RE V +I
Sbjct: 225 ---VSNISSTQETDQKVLGQLS--DLYDREL-----------------------VGII-G 255
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQ 295
+A +IPGFS L DQ L QS E+ LA+R+ + +L F L+++
Sbjct: 256 WAKQIPGFSSLALNDQMRLLQSTWAEILTFTLAWRSTPNNGRLRFAQDFTLDER 309
>gi|126310699|ref|XP_001371027.1| PREDICTED: estrogen receptor-like [Monodelphis domestica]
Length = 589
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 138/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 177 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 236
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D GR + + + P + + A P+PL
Sbjct: 237 LRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDQDGRNEAGPSTDMRASTLWPSPL----- 291
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+I+H P S L E A + Y E +P P
Sbjct: 292 -----------------LIKHTKKNSPALS-LTAEQMVSALLEAEPPILYSEYDP-NRPF 332
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 333 SEASMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 392
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 393 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 449
>gi|406855531|pdb|3V3E|B Chain B, Crystal Structure Of The Human Nur77 Ligand-Binding Domain
gi|406855532|pdb|3V3E|A Chain A, Crystal Structure Of The Human Nur77 Ligand-Binding Domain
gi|406855533|pdb|3V3Q|A Chain A, Crystal Structure Of Human Nur77 Ligand-Binding Domain In
Complex With Ethyl 2-[2,3,4
Trimethoxy-6(1-Octanoyl)phenyl]acetate
gi|406855534|pdb|3V3Q|B Chain B, Crystal Structure Of Human Nur77 Ligand-Binding Domain In
Complex With Ethyl 2-[2,3,4
Trimethoxy-6(1-Octanoyl)phenyl]acetate
Length = 257
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 88/111 (79%), Gaps = 1/111 (0%)
Query: 225 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKL 284
+QQFY LL+ S++VIR +A+KIPGF++L DQ+LL +SA LELF+LRLAYR++ + KL
Sbjct: 54 VQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKL 113
Query: 285 IFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
IFC+G+VL + QC R FG DW+++IL F +SLH + +D+ AFACL AL LI
Sbjct: 114 IFCSGLVLHRLQCARGFG-DWIDSILAFSRSLHSLLVDVPAFACLSALVLI 163
>gi|395535146|ref|XP_003769593.1| PREDICTED: estrogen receptor [Sarcophilus harrisii]
Length = 588
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 138/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 176 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 235
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D GR + + + P + + A P+PL
Sbjct: 236 LRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDQDGRNEAGPSTDMRASTLWPSPL----- 290
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+I+H P S L E A + Y E +P P
Sbjct: 291 -----------------LIKHTKKNSPALS-LTAEQMVSALLEAEPPILYSEYDP-NRPF 331
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 332 SEASMMSLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 391
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 392 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 448
>gi|147906332|ref|NP_001087382.1| estrogen-related receptor alpha [Xenopus laevis]
gi|50924716|gb|AAH79697.1| MGC80854 protein [Xenopus laevis]
Length = 408
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 136/298 (45%), Gaps = 42/298 (14%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 66 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGNIEYSCPASNECEITKRRRKACQAC 125
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSP--QESPPSPPVSLITALYREPNPLEP 156
RF KCL+VGM+KE VR D ++G R + +P Q S + ++ P+
Sbjct: 126 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPDGDILQYSSGGQAQQASATVVKKQTPVNA 185
Query: 157 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
++ LL DK+ D D +L + S +L RE
Sbjct: 186 VVSH---------LLVAE-------PDKLFAMPDPALPDGDLKYMSTLCDLADRE----- 224
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
+ +I +A IPGFS L DQ L QS +E+ +L + +R
Sbjct: 225 -------------------IVIIISWAKNIPGFSSLSLSDQMSLLQSVWMEVLLLGVVFR 265
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +++F VL+++ + D + +L + + ++ + L ALTL
Sbjct: 266 SLPYEDEVVFAEDFVLDEESSRSGRLTDLCSCVLHLVRKYRTLRVEKEEYVMLKALTL 323
>gi|348536345|ref|XP_003455657.1| PREDICTED: steroid hormone receptor ERR2-like [Oreochromis
niloticus]
Length = 446
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 138/296 (46%), Gaps = 45/296 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 112 PKRLCLVCGDTASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 171
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR K + E+ ++L P P + P+
Sbjct: 172 RFMKCLKVGMLKEGVRLDRVRG--GRQKYKRRLDAENGAYLGLTL-------PPPAKKPL 222
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ ++ H P E Y P+P P
Sbjct: 223 TK----------------IVSHLLVVEP-------------------EKIYAMPDPTMPD 247
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ + + L + VI +A IPGFS L DQ L QSA +E+ VL + +R+
Sbjct: 248 -GDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILVLSIVFRSL 306
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ ++++ V++++Q + S D AIL + + ++ F L A+ L
Sbjct: 307 PCEDEIMYAEDYVVDEEQARISGLLDLHVAILPLVRRYKKLRMEKEEFVTLKAIAL 362
>gi|309320757|gb|ADO64595.1| ecdysone receptor [Spodoptera littoralis]
Length = 585
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 150/341 (43%), Gaps = 40/341 (11%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 157 LSPASSVNGCSTDGEARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 216
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV----------RTDSLKGR 121
K + Y+C AC +D R +CQ CR +KCL VGM E V + +
Sbjct: 217 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRKEKKAQRE 276
Query: 122 RGRLP--------SKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTT 173
+ +LP P Q PP P + I + P L I E +++ L T
Sbjct: 277 KDKLPVSTTTVDDHMPPIMQCDPPPPEAARIHEVV--PRFLTEKILEQNRLKNVPPLTTN 334
Query: 174 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLT 233
+I G+ +ED + + QS + P +Q +
Sbjct: 335 QKSLIARLVWYQEGYEQPSEEDLKRVTQSDEDDEESDMP------------FRQITEMTI 382
Query: 234 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLE 293
+V +I FA +PGF+ + + DQ L ++ S E+ +LR+A R A ++F N
Sbjct: 383 LTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDASTDSVLFANNQAYT 442
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 443 RDNYRKAGMAYVIEDLLHFCRCMYAMSMDNVQYALLTAIVI 483
>gi|354466928|ref|XP_003495923.1| PREDICTED: estrogen receptor [Cricetulus griseus]
Length = 595
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 182 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 241
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D GR + + + P + A P+PL
Sbjct: 242 LRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDLEGRNEMGPSGDMRAANLWPSPL----- 296
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
VI+H P S L + A L Y E +P P
Sbjct: 297 -----------------VIKHTKKNSPALS-LTADQMVSALLDAEPPLIYSEYDP-SRPF 337
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 338 SEASMMGLLTNLADRELVHMINWAKRVPGFGDLNLHDQVHLLECAWLEILMIGLVWRSME 397
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 398 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSTRFRMMNLQGEEFVCLKSIILL 454
>gi|12230055|sp|Q9QZJ5.1|ESR1_MESAU RecName: Full=Estrogen receptor; Short=ER; AltName: Full=ER-alpha;
AltName: Full=Estradiol receptor; AltName: Full=Nuclear
receptor subfamily 3 group A member 1
gi|5834403|gb|AAD53956.1|AF181077_1 estrogen receptor alpha [Mesocricetus auratus]
Length = 595
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 138/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 182 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 241
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D GR + + + P + A P+PL
Sbjct: 242 LRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDLEGRNDMGPSGDMRATNLWPSPL----- 296
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
VI+H P S L + A L Y E +P P
Sbjct: 297 -----------------VIKHTKKNSPALS-LTADQMVSALLDAEPPLIYSEYDP-SRPF 337
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 338 SEASMMGLLTNLADRELVHMINWAKRVPGFGDLNLHDQVHLLECAWLEILMIGLIWRSME 397
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M++ F CL ++ L+
Sbjct: 398 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSARFRMMDLQGEEFVCLKSIILL 454
>gi|426234287|ref|XP_004011128.1| PREDICTED: LOW QUALITY PROTEIN: steroid hormone receptor ERR2 [Ovis
aries]
Length = 448
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 138/302 (45%), Gaps = 57/302 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV CE FF+ T++ +Y C A C + KRRR CQ C
Sbjct: 80 PKRLCLVCGDIASGYHYGVAACEAVVWFFRETLRSNIEYSCPATNECEITKRRRKSCQAC 139
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R K K +S SP +SL + PP
Sbjct: 140 RFMKCLKVGMLKEGVRLDRVRGGR----QKYKRRLDSESSPYLSL---------QISPPA 186
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE-- 216
+P LT V L EP+ L
Sbjct: 187 KKP---------LTKIVSY-----------------------------LLVAEPDKLYAM 208
Query: 217 PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP PE + + L D VI +A IPGFS+L DQ L QSA +E+ +L
Sbjct: 209 PPPGMPEGDIKALTTLCDLADRELVVIIGWAKHIPGFSNLSLGDQMSLLQSAWMEILILG 268
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
+ YR+ D KL++ +++++ + + + AIL+ + ++++ F L AL
Sbjct: 269 IVYRSLPYDDKLVYAEDYIMDEEHSRLAGLLELYRAILQLVRRYKKLKVEKEEFVTLKAL 328
Query: 333 TL 334
L
Sbjct: 329 AL 330
>gi|395850709|ref|XP_003797919.1| PREDICTED: estrogen receptor [Otolemur garnettii]
Length = 595
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 138/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 182 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 241
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D GR + + + + P + P+PL
Sbjct: 242 LRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDGEGRNEAGPSGDMRGANLWPSPL----- 296
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+I+H P S L E A + Y E +P P +
Sbjct: 297 -----------------LIKHTKKNSPALS-LTAEQMVSALLEAEPPILYSEYDPARP-L 337
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 338 SEASIMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLIWRSME 397
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 398 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 454
>gi|312385321|gb|EFR29849.1| hypothetical protein AND_00908 [Anopheles darlingi]
Length = 710
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/353 (30%), Positives = 161/353 (45%), Gaps = 32/353 (9%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTC 60
T GR S S L P S + P P +LC VCGD A+ HY TC
Sbjct: 14 TNTGREDLSPSSSLNGYTPDGSEAKK---QKKGPAPRQQEELCLVCGDRASGYHYNALTC 70
Query: 61 EGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS--L 118
EGCKGFF+R+V K + Y C AC +D R +CQ CR +KCL VGM E V ++
Sbjct: 71 EGCKGFFRRSVTKNAVYCCKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCA 130
Query: 119 KGRRGRLPSKPKSPQESPPSPPVSLI-TALYR-EPNPL-----EPPIAE----PEKI--- 164
R+ + K K ++ S VS +A Y+ E P+ PP A PEK+
Sbjct: 131 IKRKEKKAQKEKDKVQTNSSATVSTTNSATYKAELLPVLMKCESPPTAAIPLLPEKLLNE 190
Query: 165 --QQFYSLLTTS-VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAE 221
Q+ LLTT+ + VI G+ +ED + + PN E P
Sbjct: 191 NRQRNIPLLTTNQMAVIYKLIWYQDGYEQPSEEDLK--------RIMINSPNEEEDP--H 240
Query: 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
+ + +V +I FA +P F+ + +EDQ L ++ S E+ +LR+A R AE
Sbjct: 241 EIHFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDAET 300
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++F N + + + D + +L FC+ ++ + +D +A L A+ +
Sbjct: 301 DSILFANNRSYTRDSYKMAGMADTIEDLLHFCRQMYSLTVDNVEYALLTAIVI 353
>gi|36609|emb|CAA35778.1| unnamed protein product [Homo sapiens]
gi|225889|prf||1402310A cryptic steroid hormone receptor 1
Length = 521
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 134/296 (45%), Gaps = 36/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 172 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 231
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P+
Sbjct: 232 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAAPV 291
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
++ H P E Y P+P P
Sbjct: 292 NA----------------LVSHLLVVEP-------------------EKLYAMPDPAGPD 316
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 317 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 375
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 376 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 431
>gi|50950131|ref|NP_001002936.1| steroid hormone receptor ERR1 [Canis lupus familiaris]
gi|75063008|sp|Q6QMY5.1|ERR1_CANFA RecName: Full=Steroid hormone receptor ERR1; AltName:
Full=Estrogen-related receptor alpha; Short=ERR-alpha;
AltName: Full=Nuclear receptor subfamily 3 group B
member 1
gi|42559320|gb|AAS20260.1| estrogen-related receptor alpha [Canis lupus familiaris]
Length = 422
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 136/298 (45%), Gaps = 41/298 (13%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK-SPQESPPSPPVSLITALYREPNPLEPP 157
RF KCL+VGM+KE VR D ++G R + +P+ P P S P +
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGSFPAGPLAV----------- 183
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
P K +L++ H P E Y P+P P
Sbjct: 184 AGGPRKTAPVNALVS-------HLLVVEP-------------------EKLYAMPDPAGP 217
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 218 DGHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRS 276
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAI-LEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ R+ G L A+ L+ + L + ++ + L AL L
Sbjct: 277 LPLQDELAFAEDLVLDEEGA-RAAGLGELGAVLLQLVRRLQALRLEREEYVLLKALAL 333
>gi|18860920|ref|NP_004442.3| steroid hormone receptor ERR1 [Homo sapiens]
gi|215274146|sp|P11474.3|ERR1_HUMAN RecName: Full=Steroid hormone receptor ERR1; AltName: Full=Estrogen
receptor-like 1; AltName: Full=Estrogen-related receptor
alpha; Short=ERR-alpha; AltName: Full=Nuclear receptor
subfamily 3 group B member 1
gi|62205021|gb|AAH92470.1| ESRRA protein [Homo sapiens]
gi|62739721|gb|AAH93722.1| Estrogen-related receptor alpha [Homo sapiens]
gi|62739939|gb|AAH93720.1| Estrogen-related receptor alpha [Homo sapiens]
gi|94717606|gb|ABF47104.1| estrogen-related receptor alpha [Homo sapiens]
gi|119594652|gb|EAW74246.1| hCG2016877, isoform CRA_b [Homo sapiens]
gi|119594656|gb|EAW74250.1| hCG2016877, isoform CRA_b [Homo sapiens]
gi|127798260|gb|AAH63795.2| Estrogen-related receptor alpha [Homo sapiens]
gi|167773131|gb|ABZ92000.1| estrogen-related receptor alpha [synthetic construct]
gi|208966220|dbj|BAG73124.1| estrogen-related receptor alpha [synthetic construct]
gi|325495545|gb|ADZ17378.1| estrogen-related nuclear receptor alpha [Homo sapiens]
Length = 423
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 134/296 (45%), Gaps = 36/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P+
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAAPV 194
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
++ H P E Y P+P P
Sbjct: 195 NA----------------LVSHLLVVEP-------------------EKLYAMPDPAGPD 219
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 220 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 278
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 279 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 334
>gi|297267506|ref|XP_001118281.2| PREDICTED: steroid hormone receptor ERR1-like isoform 1 [Macaca
mulatta]
gi|297267508|ref|XP_002799540.1| PREDICTED: steroid hormone receptor ERR1-like isoform 2 [Macaca
mulatta]
Length = 423
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 134/296 (45%), Gaps = 36/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P+
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVSGGPRKTAAPV 194
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
++ H P E Y P+P P
Sbjct: 195 NA----------------LVSHLLVVEP-------------------EKLYAMPDPAGPD 219
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 220 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 278
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 279 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 334
>gi|87251940|dbj|BAE79508.1| estrogen receptor alpha [Eublepharis macularius]
Length = 607
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 146/326 (44%), Gaps = 27/326 (8%)
Query: 11 SPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
S RHS A SS S + ++ CAVC D A+ HYGV +CEGCK FFKR+
Sbjct: 169 SDNRRHSGKQQMACSSEKGSLSMESAKE-TRFCAVCNDYASGYHYGVWSCEGCKAFFKRS 227
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
+Q + Y+C A C +DK RR CQ CR +KC +VGM+K +R D RRG K K
Sbjct: 228 IQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKD----RRGGRMMKHK 283
Query: 131 SPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 190
Q IT R P P+ VI+H IP S
Sbjct: 284 R-QRDEHDGKTGGITFEARSPTLWTSPV------------------VIKHTKKNIPTLS- 323
Query: 191 LCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 250
L + A + Y E + P +E + +L + + ++A ++PGF
Sbjct: 324 LTADQMVSALLDAEPPVVYSEYDS-SRPFSEASIMSLLTNLADRELVHMINWAKRVPGFV 382
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAI 309
DL DQ L + A LE+ ++ L +R+ KL+F ++L++ Q + G + + +
Sbjct: 383 DLSLHDQVHLLECAWLEVLMIGLCWRSMEHPGKLLFAPNLLLDRNQGKCVDGMVEIFDML 442
Query: 310 LEFCQSLHLMEIDISAFACLCALTLI 335
L +M + F CL ++ L+
Sbjct: 443 LATATRFRMMNLQGEEFVCLKSIILL 468
>gi|379046534|gb|AFC87968.1| ecdysone receptor A [Spodoptera litura]
Length = 513
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 149/341 (43%), Gaps = 40/341 (11%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 85 LSPASSVNGCSTDGEARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 144
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV----------RTDSLKGR 121
K + Y+C AC +D R +CQ CR +KCL VGM E V + +
Sbjct: 145 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRKEKKAQRE 204
Query: 122 RGRLP--------SKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTT 173
+ +LP P Q PP P + I + P L PI E +++ L
Sbjct: 205 KDKLPVSTTTVDDHMPPIMQCDPPPPEAARINEVL--PRYLTEPIMEQNRLKNVPPLSPN 262
Query: 174 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLT 233
+I G+ +ED + +S E P +Q +
Sbjct: 263 QKSLIARLVWYQEGYEQPSEEDLRRITESDEDEEESDMP------------FRQITEMTI 310
Query: 234 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLE 293
+V +I FA +PGF+ + + DQ L ++ S E+ +LR+A R A ++F N
Sbjct: 311 LTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDASTDSVLFANNQAYT 370
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 371 RDNYRKAGMAYVIEDLLHFCRCMYAMPMDNIQYALLTAIVI 411
>gi|151327627|gb|ABS00248.1| ecdysone receptor A isoform [Omphisa fuscidentalis]
Length = 514
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/339 (29%), Positives = 152/339 (44%), Gaps = 32/339 (9%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 83 LSPASSVNGCSTDGEARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 142
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
K + Y+C C +D R +CQ CR +KCL VGM E V + ++ K K
Sbjct: 143 TKNAVYICKFGHGCEMDMYMRRKCQECRLKKCLAVGMRPECVVPEPQCAQK----RKEKK 198
Query: 132 PQESPPSPPVSLITALYREPNPL--EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 189
Q PVS T P + +PP E +I + + + ++ IP S
Sbjct: 199 AQREKDKLPVSTTTVDDHMPAIMQCDPPPPEAARIHEVVPRFLSEKLMEQNRLKNIPPLS 258
Query: 190 DLCKEDQELL----------FQSASLELFYREPNPLEPPIAEPEK----IQQFYSLLTTS 235
+Q+ L ++ S E R + AE E +Q + +
Sbjct: 259 ----ANQQFLIARLVWYQDGYEQPSEEDLKRVTQTWQSADAEDEDSDMPFRQITEMTILT 314
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQ 295
V +I FA +PGFS + + DQ L ++ S E+ +LR+A R A ++F N +
Sbjct: 315 VQLIVEFAKGLPGFSKISQPDQITLLKACSSEVMMLRVARRYDAASDSVLFANNQAYTRD 374
Query: 296 QCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 375 NYRKAGMAYVIEDLLHFCRCMYSMSMDNVHYALLTAVVI 413
>gi|407186430|gb|ACY80739.2| ecdysone receptor B isoform [Bradysia coprophila]
Length = 541
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 144/318 (45%), Gaps = 27/318 (8%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
PTP +LC VCGD A+ HY TCEGCKGFF+R+V K + Y C C +D R
Sbjct: 133 PTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKNAVYCCKFGHECEMDMYMRR 192
Query: 94 RCQFCRFQKCLQVGMVKEVV--RTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYRE- 150
+CQ CR +KCL VGM E V T R+ + K K Q+ PPS V+ E
Sbjct: 193 KCQECRLKKCLAVGMRPECVVPETQCAIKRKEKKAQKEKDKQQIPPSSVVTTTDTYKSEI 252
Query: 151 PNPLE---PPIAE-----------PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 196
P+ ++ PP AE + + +L + VI G+ +ED
Sbjct: 253 PSLMKCDPPPHAECTQLLSQKLLDENRAKHVPALTNNQLAVIYKLIWYQDGYEQPSEEDL 312
Query: 197 ELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 256
+ + ++ P + + + +V +I FA +P F+ + +ED
Sbjct: 313 KRIMINS----------PEDSEDQHDVNFRHITEITILTVQLIVEFAKGLPAFTKIPQED 362
Query: 257 QELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSL 316
Q L ++ S E+ +LR+A R AE ++F N + + D + +L FC+ +
Sbjct: 363 QITLLKACSSEVMMLRMARRYDAESDSILFANNRTYTRDSYIMAGMADTIEDLLHFCRQM 422
Query: 317 HLMEIDISAFACLCALTL 334
+ M +D +A L A+ +
Sbjct: 423 YSMTVDNVEYALLTAIVI 440
>gi|407186428|gb|ACY80738.2| ecdysone receptor A isoform [Bradysia coprophila]
Length = 610
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 144/318 (45%), Gaps = 27/318 (8%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
PTP +LC VCGD A+ HY TCEGCKGFF+R+V K + Y C C +D R
Sbjct: 202 PTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKNAVYCCKFGHECEMDMYMRR 261
Query: 94 RCQFCRFQKCLQVGMVKEVV--RTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYRE- 150
+CQ CR +KCL VGM E V T R+ + K K Q+ PPS V+ E
Sbjct: 262 KCQECRLKKCLAVGMRPECVVPETQCAIKRKEKKAQKEKDKQQIPPSSVVTTTDTYKSEI 321
Query: 151 PNPLE---PPIAE-----------PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 196
P+ ++ PP AE + + +L + VI G+ +ED
Sbjct: 322 PSLMKCDPPPHAECTQLLSQKLLDENRAKHVPALTNNQLAVIYKLIWYQDGYEQPSEEDL 381
Query: 197 ELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 256
+ + ++ P + + + +V +I FA +P F+ + +ED
Sbjct: 382 KRIMINS----------PEDSEDQHDVNFRHITEITILTVQLIVEFAKGLPAFTKIPQED 431
Query: 257 QELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSL 316
Q L ++ S E+ +LR+A R AE ++F N + + D + +L FC+ +
Sbjct: 432 QITLLKACSSEVMMLRMARRYDAESDSILFANNRTYTRDSYIMAGMADTIEDLLHFCRQM 491
Query: 317 HLMEIDISAFACLCALTL 334
+ M +D +A L A+ +
Sbjct: 492 YSMTVDNVEYALLTAIVI 509
>gi|373159261|gb|AEY63780.1| ecdysone receptor isoform A [Monochamus alternatus]
Length = 565
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 149/329 (45%), Gaps = 44/329 (13%)
Query: 22 SASSSPGCDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV 78
+ S+ CD + P+P Q LC VCGD A+ HY TCEGCKGFF+R++ K + Y
Sbjct: 180 NGYSADSCDAKKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQ 239
Query: 79 CLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTD---SLKGRRGRLPSKPKSPQES 135
C C +D R +CQ CR +KCL VGM E V + ++K + + + P +
Sbjct: 240 CKYGNNCEIDMYMRRKCQECRLKKCLTVGMRPECVVPEVQCAVKRKEKKAQKEKDKPNST 299
Query: 136 PPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 195
P E LEP +++ EK LT V I E
Sbjct: 300 TNGSP---------EMIKLEPELSDTEKT------LTNGVKPI-------------SPEQ 331
Query: 196 QELLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 245
+EL+ + + Y P+ P+E + + + +V +I FA +
Sbjct: 332 EELIHRLVYFQNEYEHPSEEDVKRIINQPMEGEDQCDIRFRHITEITILTVQLIVEFAKR 391
Query: 246 IPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDW 305
+PGF L +EDQ L ++ S E+ + R+A R + ++F N + + +
Sbjct: 392 LPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQSDSILFVNNQPYSRDSYNLAGMGET 451
Query: 306 LNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +L FC++++ M++D + +A L A+ +
Sbjct: 452 IEDLLHFCRTMYSMKVDNAEYALLTAIVI 480
>gi|157041191|dbj|BAF79665.1| ecdysone receptor A isoform [Camponotus japonicus]
Length = 576
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 148/327 (45%), Gaps = 34/327 (10%)
Query: 29 CDTSR---PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKAC 85
CD+ + PTP +LC VCGD A+ HY TCEGCKGFF+R++ + + Y C C
Sbjct: 180 CDSKKRKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITRNAVYQCKYGNGC 239
Query: 86 PVDKRRRNRCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGRLPSKPKSPQESPP 137
+D R +CQ CR +KCL VGM E V+ K ++ + + SP
Sbjct: 240 EIDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEKKAQKEKDKPNSTTMNGSPG 299
Query: 138 SPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 197
S +S + EP AE E SL + I P + E +E
Sbjct: 300 SAGMSEQVGVKMEP-------AEAE------SLSMSGSSGILTPVSPYPCVKPISPEQEE 346
Query: 198 LLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP 247
L+ + S + + +P+ P+E + + +V +I F+ ++P
Sbjct: 347 LINRLVSFQCEFEQPSEDDLKRITNQPMEGEDPSDYSFRHITEITILTVQLIVEFSKRLP 406
Query: 248 GFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLN 307
GF++L +EDQ L ++ S E+ +LR+A + +IF N + + D +
Sbjct: 407 GFNELMREDQITLLKACSSEVMMLRMARKYDVHTDSIIFANNQPYTRDSYNVAGMGDTIE 466
Query: 308 AILEFCQSLHLMEIDISAFACLCALTL 334
+L FC+ ++ M ++ + +A L A+ +
Sbjct: 467 DLLRFCRQMYAMRVNNAEYALLTAIVI 493
>gi|151327629|gb|ABS00249.1| ecdysone receptor B1 isoform [Omphisa fuscidentalis]
Length = 541
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 152/340 (44%), Gaps = 32/340 (9%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 110 LSPASSVNGCSTDGEARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 169
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
K + Y+C C +D R +CQ CR +KCL VGM E V + ++ K K
Sbjct: 170 TKNAVYICKFGHGCEMDMYMRRKCQECRLKKCLAVGMRPECVVPEPQCAQK----RKEKK 225
Query: 132 PQESPPSPPVSLITALYREPNPL--EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 189
Q PVS T P + +PP E +I + + + ++ IP S
Sbjct: 226 AQREKDKLPVSTTTVDDHMPAIMQCDPPPPEAARIHEVVPRFLSEKLMEQNRLKNIPPLS 285
Query: 190 DLCKEDQELL----------FQSASLELFYREPNPLEPPIAEPEK----IQQFYSLLTTS 235
+Q+ L ++ S E R + AE E +Q + +
Sbjct: 286 ----ANQQFLIARLVWYQDGYEQPSEEDLKRVTQTWQSADAEDEDSDMPFRQITEMTILT 341
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQ 295
V +I FA +PGFS + + DQ L ++ S E+ +LR+A R A ++F N +
Sbjct: 342 VQLIVEFAKGLPGFSKISQPDQITLLKACSSEVMMLRVARRYDAASDSVLFANNQAYTRD 401
Query: 296 QCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 402 NYRKAGMAYVIEDLLHFCRCMYSMSMDNVHYALLTAVVIF 441
>gi|374091622|gb|AEY83589.1| estrogen receptor alpha [Ceratotherium simum simum]
Length = 574
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 161 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 220
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D GR + + + + P + A PNPL
Sbjct: 221 LRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDGEGRNEAGPSGDLRASNFWPNPL----- 275
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+I+H P S L E A L Y + + P
Sbjct: 276 -----------------LIKHTKKNSPALS-LTAEQMVSALLDAEPPLIYSDYDA-SRPF 316
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 317 SEASMMGLLTNLADRELVHMINWAKRVPGFVDLSLHDQVHLLECAWLEILMIGLVWRSME 376
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 377 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 433
>gi|440907430|gb|ELR57584.1| Steroid hormone receptor ERR1, partial [Bos grunniens mutus]
Length = 428
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 134/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 81 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 140
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 141 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 200
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 201 A-----------------LVSHLLVVEP-------------------EKLYAMPDPAGPD 224
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 225 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 283
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 284 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 339
>gi|338712187|ref|XP_001489561.3| PREDICTED: steroid hormone receptor ERR1-like [Equus caballus]
Length = 422
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 134/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 194
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 195 A-----------------LVSHLLVVEP-------------------EKLYAMPDPAGPD 218
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 219 GQLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 277
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 278 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 333
>gi|161769555|gb|ABX79143.1| ecdysone receptor [Spodoptera litura]
Length = 588
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 150/341 (43%), Gaps = 37/341 (10%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 157 LSPASSVNGCSTDGEARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 216
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV----------RTDSLKGR 121
K + Y+C AC +D R +CQ CR +KCL VGM E V + +
Sbjct: 217 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRKEKKAQRE 276
Query: 122 RGRLP--------SKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTT 173
+ +LP P Q PP P + I + P L PI E +++ L
Sbjct: 277 KDKLPVSTTTVDDHMPPIMQCDPPPPEAARINEVL--PRYLTEPIMEQNRLKNVPPLSPN 334
Query: 174 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLT 233
+I G+ +ED + ++ + E + +Q +
Sbjct: 335 QKSLIARLVWYQEGYEQPSEEDLRRITETWQSDEDEEESD---------MPFRQITEMTI 385
Query: 234 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLE 293
+V +I FA +PGF+ + + DQ L ++ S E+ +LR+A R A ++F N
Sbjct: 386 LTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDASTDSVLFANNQAYT 445
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 446 RDNYRKAGMAYVIEDLLHFCRCMYAMPMDNIQYALLTAIVI 486
>gi|373159263|gb|AEY63781.1| ecdysone receptor isoform B [Monochamus alternatus]
Length = 490
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 158/345 (45%), Gaps = 40/345 (11%)
Query: 7 SSSESPKLRHSAPLS-SASSSPGCDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEG 62
+SS S + S P S + S+ CD + P+P Q LC VCGD A+ HY TCEG
Sbjct: 84 TSSMSGREDLSPPSSLNGYSADSCDAKKKKGPTPRQQEELCLVCGDRASGYHYNALTCEG 143
Query: 63 CKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTD---SLK 119
CKGFF+R++ K + Y C C +D R +CQ CR +KCL VGM E V + ++K
Sbjct: 144 CKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLTVGMRPECVVPEVQCAVK 203
Query: 120 GRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIR 179
+ + + P + P E LEP + F+ L+ + +
Sbjct: 204 RKEKKAQKEKDKPNSTTNGSP---------EMIKLEP--------EMFFLQLSDTEKTLT 246
Query: 180 HFADKIPGFSDLCKEDQELLFQSASLELFYREPN----------PLEPPIAEPEKIQQFY 229
+ G + E +EL+ + + Y P+ P+E + +
Sbjct: 247 N------GVKPISPEQEELIHRLVYFQNEYEHPSEEDVKRIINQPMEGEDQCDIRFRHIT 300
Query: 230 SLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNG 289
+ +V +I FA ++PGF L +EDQ L ++ S E+ + R+A R + ++F N
Sbjct: 301 EITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQSNSILFVNN 360
Query: 290 VVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + + + +L FC++++ M++D + +A L A+ +
Sbjct: 361 QPYSRDSYNLAGMGETIEDLLHFCRTMYSMKVDNAEYALLTAIVI 405
>gi|363809053|dbj|BAL41654.1| ecdysone receptor [Scirpophaga incertulas]
Length = 545
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 159/344 (46%), Gaps = 37/344 (10%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 111 LSPASSVNGCSTDGDARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 170
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS--LKGR-------- 121
K + Y+C AC +D R +CQ CR +KCL VGM E V ++ LK R
Sbjct: 171 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCLKKRNEKKAQRE 230
Query: 122 RGRLP--------SKPKSPQESPPSPPVS-LITALYRE--PNPLEPPIAEPEKIQQFYSL 170
+ +LP P Q PP P + ++ L E P L + E +++ L
Sbjct: 231 KDKLPVSTTTVDDHMPPIMQCDPPPPEAARILECLQHEVVPRFLSEKLMEQNRLKNIPPL 290
Query: 171 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYS 230
+I G+ +ED + + Q+ ++ + E P +Q
Sbjct: 291 TANQQCLIARLVWYQDGYEQPSEEDLKRVTQT------WQSADEEEEDTDMP--FRQITE 342
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ +V +I FA +PGFS + + DQ L ++ S E+ +LR+A R A+ ++F N
Sbjct: 343 MTILTVQLIVEFAKGLPGFSKISQPDQITLLKACSSEVMMLRVARRYDADSDSVLFANNQ 402
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +++ + +L FC+ ++ M++D +A L A+ +
Sbjct: 403 AYTRDNYRKAGMAYVIEDLLHFCRCMYSMQMDNVHYALLTAVVI 446
>gi|348565344|ref|XP_003468463.1| PREDICTED: steroid hormone receptor ERR1-like [Cavia porcellus]
Length = 507
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 137/296 (46%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 160 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 219
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 220 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPMAVAGGPRKTAPVN 279
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H L E ++L Y P+P P
Sbjct: 280 A-----------------LVSHL---------LVVEPEKL----------YAMPDPAGPD 303
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 304 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 362
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 363 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 418
>gi|300798453|ref|NP_001178302.1| steroid hormone receptor ERR1 [Bos taurus]
gi|296471498|tpg|DAA13613.1| TPA: estrogen-related receptor alpha-like [Bos taurus]
Length = 422
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 134/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 194
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 195 A-----------------LVSHLLVVEP-------------------EKLYAMPDPAGPD 218
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 219 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 277
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 278 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 333
>gi|449277860|gb|EMC85882.1| Estrogen receptor, partial [Columba livia]
Length = 590
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 138/298 (46%), Gaps = 26/298 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQ-KGSKYVCLADKACPVDKRRRNRCQFC 98
++ CAVC D A+ HYGV +CEGCK FFKR++Q + + Y+C A C +DK RR CQ C
Sbjct: 176 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGRHNDYMCPATNQCTIDKNRRKSCQAC 235
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
R +KC +VGM+K +R D RRG K K +E S + R P P+
Sbjct: 236 RLRKCYEVGMMKGGIRKD----RRGGRMMKQKRQREEQDSRNGEASSTELRAPTIWTSPL 291
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
V++H P S L E A + Y E +P P
Sbjct: 292 ------------------VVKHNKKNSPALS-LTAEQMVSALLEAEPPIVYSEYDP-NRP 331
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 332 FNEASMMTLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSM 391
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 392 EHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATAARFRMMNLQGEEFVCLKSIILL 449
>gi|8895467|gb|AAF80976.1| retinoic acid receptor gamma 2I [Ambystoma mexicanum]
Length = 446
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 137/293 (46%), Gaps = 40/293 (13%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 79 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQK 138
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KEVV +++ R + + K ++T Y P +E IA+
Sbjct: 139 CFEVGMSKEVVAAAAVRNDRNKKKKEIKE----------EVVTDSYEMPPEMEALIAKVS 188
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + SA + L+ + +
Sbjct: 189 KAHQ-------------------ETFPSLCQLGKYTTNSSADHRV------QLDLGLWD- 222
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 223 ----KFSELATKCIIKIVEFAKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQD 278
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F + L +E+D + L A+ LI
Sbjct: 279 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLEMDDTETGLLSAICLI 331
>gi|440909483|gb|ELR59387.1| Estrogen receptor, partial [Bos grunniens mutus]
Length = 447
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 143/301 (47%), Gaps = 33/301 (10%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 34 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 93
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K ++ ++ + R N PI
Sbjct: 94 LRKCYEVGMMKGGIRKD----RRGGRMLKHKRQRDDGEGRNEAVPSGDMRAANLWPSPI- 148
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE----LFYREPNPL 215
+I+H P S DQ + SA LE + Y E +P
Sbjct: 149 -----------------MIKHTKKNSPVLS--LTADQMI---SALLEAEPPIIYSEYDPT 186
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
P +E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +
Sbjct: 187 RP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLALHDQVHLLECAWLEILMIGLVW 245
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ KL+F ++L++ Q + G + + +L +M + F CL ++ L
Sbjct: 246 RSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIIL 305
Query: 335 I 335
+
Sbjct: 306 L 306
>gi|388325213|gb|AFK27930.1| ecdysone receptor B1 isoform A [Spodoptera litura]
Length = 588
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 150/341 (43%), Gaps = 37/341 (10%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 157 LSPASSVNGCSTDGEARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 216
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV----------RTDSLKGR 121
K + Y+C AC +D R +CQ CR +KCL VGM E V + +
Sbjct: 217 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRKEKEAQRE 276
Query: 122 RGRLP--------SKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTT 173
+ +LP P Q PP P + I + P L PI E +++ L
Sbjct: 277 KDKLPVSTTTVDDHMPPIMQCDPPPPEAARINEVL--PRYLTEPIMEQNRLKNVPPLSPN 334
Query: 174 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLT 233
+I G+ +ED + ++ + E + +Q +
Sbjct: 335 QRSLIARLVWYQEGYEQPSEEDLRRITETWQSDEDEEESD---------MPFRQITEMTI 385
Query: 234 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLE 293
+V +I FA +PGF+ + + DQ L ++ S E+ +LR+A R A ++F N
Sbjct: 386 LTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDASTDSVLFANNQAYT 445
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 446 RDNYRKAGMAYVIEDLLHFCRCMYAMPMDNIQYALLTAIVI 486
>gi|441605781|ref|XP_003274206.2| PREDICTED: steroid hormone receptor ERR1 [Nomascus leucogenys]
Length = 422
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 134/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 194
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 195 A-----------------LVSHLLVVEP-------------------EKLYAMPDPAGPD 218
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 219 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 277
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 278 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 333
>gi|1239957|gb|AAB17015.1| estrogen receptor-related protein, partial [Homo sapiens]
Length = 481
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 137/296 (46%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 134 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 193
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 194 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 253
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H L E ++L Y P+P P
Sbjct: 254 A-----------------LVSHL---------LVVEPEKL----------YAMPDPAGPD 277
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 278 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 336
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 337 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 392
>gi|403293398|ref|XP_003937704.1| PREDICTED: steroid hormone receptor ERR1 [Saimiri boliviensis
boliviensis]
Length = 422
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 134/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 194
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 195 A-----------------LVSHLLVVEP-------------------EKLYAMPDPAGPD 218
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 219 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 277
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 278 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 333
>gi|355752005|gb|EHH56125.1| Estrogen-related receptor alpha [Macaca fascicularis]
Length = 402
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 134/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVSGGPRKTAPVN 194
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 195 A-----------------LVSHLLVVEP-------------------EKLYAMPDPAGPD 218
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 219 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 277
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 278 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 333
>gi|66734827|gb|AAY53653.1| estrogen receptor alpha [Microtus ochrogaster]
Length = 599
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 186 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 245
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D GR + + + S + A P+PL
Sbjct: 246 LRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDLEGSNGMGSSGDMRAANLWPSPL----- 300
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
VI+H P S L + A L Y E +P P
Sbjct: 301 -----------------VIKHTKKNSPALS-LTADQMVSALLDAEPPLIYSEYDP-SRPF 341
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 342 SEASMMGLLTNLADRELVHMINWAKRVPGFGDLNLHDQVHLLECAWLEILMIGLIWRSME 401
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 402 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLAASTRFRMMNLQGEEFVCLKSIILL 458
>gi|45384256|ref|NP_990625.1| retinoic acid receptor RXR-gamma [Gallus gallus]
gi|133700|sp|P28701.1|RXRG_CHICK RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|63496|emb|CAA41743.1| retinoic acid receptor [Gallus gallus]
Length = 467
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 152/342 (44%), Gaps = 78/342 (22%)
Query: 3 LGRSSSSES----PKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVR 58
L SSSE P L ++ S+SPG +CA+CGD ++ +HYGV
Sbjct: 107 LNNVSSSEDIKPLPGLPGIGNMNYPSTSPGSLAK--------HICAICGDRSSGKHYGVY 158
Query: 59 TCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSL 118
+CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ +
Sbjct: 159 SCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER- 217
Query: 119 KGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTS---- 174
+G R R ++ +S PV I LE +A K + + + T S
Sbjct: 218 QGSRERSENEAESTSGGSEDMPVERI---------LEAELAVEPKTEAYSDVNTESSTND 268
Query: 175 -VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLT 233
V I H ADK Q ++L+
Sbjct: 269 PVTNICHAADK------------------------------------------QLFTLV- 285
Query: 234 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLE 293
+A +IP FSDL EDQ +L ++ EL + ++R+ + ++ G+ +
Sbjct: 286 -------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVH 338
Query: 294 KQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + G + + E + M++D S CL A+ L
Sbjct: 339 RSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 380
>gi|391338687|ref|XP_003743687.1| PREDICTED: estrogen-related receptor gamma-like [Metaseiulus
occidentalis]
Length = 452
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 141/310 (45%), Gaps = 58/310 (18%)
Query: 33 RPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRR 92
R SP ++C VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A+ C ++KRRR
Sbjct: 103 RVEQGSPRRVCLVCGDVASGYHYGVASCEACKAFFKRTIQGNIEYTCPANNDCEINKRRR 162
Query: 93 NRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSP-------PVSLIT 145
CQ CRFQKCL+ GM+KE VR D ++G R + P+ P + P ++I+
Sbjct: 163 KACQACRFQKCLKTGMLKEGVRLDRVRGGRQKYRRNPEGPYQVAAQPIKRITIDENTIIS 222
Query: 146 ALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 205
AL EPP T S+ + + + + C L +A
Sbjct: 223 ALI----ACEPP--------------TLSISMNKEYTNA------FCDSKTAL---AALG 255
Query: 206 ELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 265
EL RE V++I +A +IPGFS + +DQ L Q +
Sbjct: 256 ELIDREL-----------------------VNII-GWARQIPGFSQIHLDDQMRLLQMSW 291
Query: 266 LELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISA 325
E+ L LA+R+ L + N + L + Q + ++ Q L+ + I
Sbjct: 292 GEVLSLTLAFRSMESSDGLSYANDLTLSQVQAEEMGLEEIFLYTKHLVQRLNAIRIFKEE 351
Query: 326 FACLCALTLI 335
+ L A+ LI
Sbjct: 352 YLALKAMALI 361
>gi|296483897|tpg|DAA26012.1| TPA: estrogen receptor-like [Bos taurus]
Length = 470
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 143/301 (47%), Gaps = 33/301 (10%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 57 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 116
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K ++ ++ + R N PI
Sbjct: 117 LRKCYEVGMMKGGIRKD----RRGGRMLKHKRQRDDGEGRNEAVPSGDMRAANLWPSPI- 171
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE----LFYREPNPL 215
+I+H P S DQ + SA LE + Y E +P
Sbjct: 172 -----------------MIKHTKKNSPVLS--LTADQMI---SALLEAEPPIIYSEYDPT 209
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
P +E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +
Sbjct: 210 RP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLALHDQVHLLECAWLEILMIGLVW 268
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ KL+F ++L++ Q + G + + +L +M + F CL ++ L
Sbjct: 269 RSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIIL 328
Query: 335 I 335
+
Sbjct: 329 L 329
>gi|426369018|ref|XP_004051495.1| PREDICTED: steroid hormone receptor ERR1 [Gorilla gorilla gorilla]
Length = 422
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 134/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 194
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 195 A-----------------LVSHLLVVEP-------------------EKLYAMPDPAGPD 218
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 219 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 277
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 278 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 333
>gi|410045291|ref|XP_522050.3| PREDICTED: steroid hormone receptor ERR1 [Pan troglodytes]
gi|119594651|gb|EAW74245.1| hCG2016877, isoform CRA_a [Homo sapiens]
gi|410206602|gb|JAA00520.1| estrogen-related receptor alpha [Pan troglodytes]
gi|410299492|gb|JAA28346.1| estrogen-related receptor alpha [Pan troglodytes]
gi|410341797|gb|JAA39845.1| estrogen-related receptor alpha [Pan troglodytes]
Length = 422
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 134/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 194
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 195 A-----------------LVSHLLVVEP-------------------EKLYAMPDPAGPD 218
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 219 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 277
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 278 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 333
>gi|17827182|dbj|BAB79437.1| estrogen receptor [Aspidoscelis uniparens]
Length = 581
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 141/302 (46%), Gaps = 36/302 (11%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 173 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 232
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----TALYREPNPLE 155
+KC +VGM+K +R D R GR+ + E V++ T L+ P+PL
Sbjct: 233 LRKCYEVGMMKGGIRKDR---RGGRMLKHKRQRDELDGRNAVAVTEARNTTLW--PSPL- 286
Query: 156 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
+I+H P S L E A + Y E +P
Sbjct: 287 ---------------------MIKHSKKNSPALS-LTAEQMVSALLDAEPPIVYSEYDP- 323
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
P +E + +L + + +A ++PGF DL DQ L + A LE+ ++ L +
Sbjct: 324 SSPFSEASVMTLLTNLADRELVHMITWAKRVPGFVDLALHDQVHLLECAWLEILMIGLIW 383
Query: 276 RTRAEDTKLIFCNGVVLEKQQ--CQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALT 333
R+ KL+F ++L++ Q C F + + + +L +M I F CL ++
Sbjct: 384 RSLEHPGKLLFAPNLLLDRSQGMCVEGFVEIF-DMLLATSSRFRMMNIQGEEFVCLKSII 442
Query: 334 LI 335
L+
Sbjct: 443 LL 444
>gi|380810478|gb|AFE77114.1| steroid hormone receptor ERR1 [Macaca mulatta]
gi|383416493|gb|AFH31460.1| steroid hormone receptor ERR1 [Macaca mulatta]
Length = 422
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 134/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVSGGPRKTAPVN 194
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 195 A-----------------LVSHLLVVEP-------------------EKLYAMPDPAGPD 218
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 219 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 277
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 278 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 333
>gi|395742567|ref|XP_002821614.2| PREDICTED: steroid hormone receptor ERR1 isoform 1 [Pongo abelii]
Length = 506
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 137/296 (46%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 159 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 218
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 219 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 278
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H L E ++L Y P+P P
Sbjct: 279 A-----------------LVSHL---------LVVEPEKL----------YAMPDPAGPD 302
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 303 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 361
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 362 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 417
>gi|47824866|ref|NP_001001443.1| estrogen receptor [Bos taurus]
gi|55584164|sp|P49884.3|ESR1_BOVIN RecName: Full=Estrogen receptor; Short=ER; AltName: Full=ER-alpha;
AltName: Full=Estradiol receptor; AltName: Full=Nuclear
receptor subfamily 3 group A member 1
gi|42795679|gb|AAS46251.1| estrogen receptor alpha [Bos taurus]
Length = 596
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 143/301 (47%), Gaps = 33/301 (10%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 183 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 242
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K ++ ++ + R N PI
Sbjct: 243 LRKCYEVGMMKGGIRKD----RRGGRMLKHKRQRDDGEGRNEAVPSGDMRAANLWPSPI- 297
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE----LFYREPNPL 215
+I+H P S DQ + SA LE + Y E +P
Sbjct: 298 -----------------MIKHTKKNSPVLS--LTADQMI---SALLEAEPPIIYSEYDPT 335
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
P +E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +
Sbjct: 336 RP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLALHDQVHLLECAWLEILMIGLVW 394
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ KL+F ++L++ Q + G + + +L +M + F CL ++ L
Sbjct: 395 RSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIIL 454
Query: 335 I 335
+
Sbjct: 455 L 455
>gi|426235222|ref|XP_004011587.1| PREDICTED: estrogen receptor [Ovis aries]
Length = 470
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 142/301 (47%), Gaps = 33/301 (10%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 57 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 116
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K ++ ++ + R N PI
Sbjct: 117 LRKCYEVGMMKGGIRKD----RRGGRMLKHKRQRDDGEGRNEAVPSGDMRATNLWPSPI- 171
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE----LFYREPNPL 215
+I+H P S DQ + SA LE + Y E +P
Sbjct: 172 -----------------MIKHTKKNSPVLS--LTADQMI---SALLEAEPPIIYSEYDPT 209
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
P +E + L + + ++A ++PGF DL DQ L + A LE+ ++ L +
Sbjct: 210 RP-FSEASMMGLLTGLADRELVHMINWAKRVPGFVDLALHDQVHLLECAWLEILMIGLVW 268
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ KL+F ++L++ Q + G + + +L +M + F CL ++ L
Sbjct: 269 RSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIIL 328
Query: 335 I 335
+
Sbjct: 329 L 329
>gi|218156202|dbj|BAH03333.1| retinoic acid receptor 1 [Lethenteron camtschaticum]
Length = 497
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 136/293 (46%), Gaps = 37/293 (12%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R+VQK Y C DK C ++K RNRCQ+CR QK
Sbjct: 90 CFVCQDKSSGYHYGVSSCEGCKGFFRRSVQKNMVYTCHRDKNCVINKNTRNRCQYCRLQK 149
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K R+ E+P ++ A R P PE
Sbjct: 150 CFEVGMSKEAVRNDRNKKRK-----------EAP------VVVAAVRSPE------VPPE 186
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
+ + VD IR + F LC+ + A + L+ + +
Sbjct: 187 RYE-LSCEQEQLVDKIRKSHQET--FPSLCQLGKYTTNSCADHRV------QLDLGLWD- 236
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF L DQ L ++A LE+ +LR+ R E
Sbjct: 237 ----KFSELSTKCIVKIVEFAKRLPGFPSLTIADQITLLKAACLEILILRICSRYTPEQD 292
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 293 TMTFSDGLTLNRTQMHNAGFGPLTDYVFAFAAQLLPLEMDDAEAGLLSAICLI 345
>gi|269784855|ref|NP_001161579.1| liver X-like nuclear receptor [Saccoglossus kowalevskii]
gi|268054153|gb|ACY92563.1| liver X-like nuclear receptor [Saccoglossus kowalevskii]
Length = 474
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 162/334 (48%), Gaps = 36/334 (10%)
Query: 12 PKLRHSAPLSSASSSPGCDTSR-PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
P ++P S S S + P P + +LC VCGD A+ HY +CEGCKGFF+R+
Sbjct: 84 PNYNMASPQSDDSDSTSAKRRKGPLPRTDLELCLVCGDRASGFHYNALSCEGCKGFFRRS 143
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSL-KGRRGRLPSKP 129
V K + Y C C +D R +CQ CR +KC +VGM+ E + T+ K +R R K
Sbjct: 144 VTKNAVYKCTRGGRCEMDMYMRRKCQECRLRKCREVGMLPECLLTEEQCKSKRQR---KM 200
Query: 130 KSPQESPPSPPVSLITALYREPNP---LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP 186
Q + P P S + E NP EP I ++ ++ +T + + +IP
Sbjct: 201 VKQQLTKPQPQPSNEGSNSFENNPSSQSEPAIDLTDEQKEIIVKITQAQREL-----EIP 255
Query: 187 GFSDLCK-----EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH 241
G D+ K E+Q L + L + + L ++LT V ++
Sbjct: 256 GPDDMRKVTPWPEEQSQLTEGEKLHMRFAHITEL--------------TILT--VQLVVE 299
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ-CQRS 300
F+ ++PGF DL +EDQ +L + +++E+ +LR A R ED ++F NG+ + C
Sbjct: 300 FSKRLPGFIDLNREDQIVLLKGSAIEVLLLRAAMRYIKEDDAIVFGNGLPYSRDTLCDGG 359
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G D ++ + EF + + +++D F L A+ +
Sbjct: 360 IG-DIVDPMYEFSRGMVDLDLDYGDFTVLMAIVI 392
>gi|391328030|ref|XP_003738496.1| PREDICTED: ecdysone receptor-like [Metaseiulus occidentalis]
Length = 497
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 158/350 (45%), Gaps = 49/350 (14%)
Query: 10 ESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKR 69
+SP + S +P ++ P +LC VCGD A+ HY TCEGCKGFF+R
Sbjct: 57 KSPSGESTTLTSQTGLAPSPISNSTNPRQQQELCLVCGDRASGYHYNALTCEGCKGFFRR 116
Query: 70 TVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKE-VVRTDSLKGRRGRLPSK 128
++ K + Y C C +D R +CQ CR +KCL VGM E VV +R SK
Sbjct: 117 SITKNAVYTCKYGNVCEIDMYMRRKCQECRLKKCLMVGMRSECVVPEYQCAMKR---ESK 173
Query: 129 PKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGF 188
++PQ + + + I A+ P A +IQ V+ AD+ P
Sbjct: 174 KQTPQHTHKAGETNGIVAI----GP-----ANASRIQPM---------VVEEIADEKPNI 215
Query: 189 SDL---------CKEDQELLFQSASLELFYRE--PNPLEP--------PIAEPE-----K 224
L EDQE L ++Y++ +P E P+ + E +
Sbjct: 216 MALNMAVRQVKPLTEDQEQLINRL---VYYQQEFESPAESDLRQITQFPLGDSEEDNELR 272
Query: 225 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKL 284
Q F + +V +I F+ ++PGF L +EDQ L ++ S E+ +LR A + + +
Sbjct: 273 FQHFTGITILTVQLIVEFSKRVPGFDSLLREDQITLLKACSSEIMMLRSARKYDVKTDSI 332
Query: 285 IFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+F N ++ + + D +AI FC+ + + +D + +A L A+ +
Sbjct: 333 VFANNQPYTRENYKSASVGDSADAIFRFCRHMCNLRVDNAEYALLTAIVI 382
>gi|417410872|gb|JAA51901.1| Putative steroid hormone receptor err1, partial [Desmodus rotundus]
Length = 458
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 136/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 111 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 170
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 171 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 230
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H L E ++L Y P P P
Sbjct: 231 A-----------------LVSHL---------LVVEPEKL----------YAMPEPAGPD 254
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 255 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 313
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 314 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 369
>gi|350537461|ref|NP_001233277.1| retinoic acid receptor, gamma, variant a [Oncorhynchus mykiss]
gi|315466297|emb|CBY83981.1| retinoic acid receptor, gamma, variant a [Oncorhynchus mykiss]
Length = 502
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 130/294 (44%), Gaps = 46/294 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 77 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQK 136
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D +K K + PP S Y LE + +
Sbjct: 137 CFEVGMSKEAVRNDR---------NKKKKDVKEELVPPES-----YELSGELEELVNKVS 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCK-EDQELLFQSASLELFYREPNPLEPPIAE 221
K Q D P L K Q L+L +
Sbjct: 183 KAHQ----------------DTFPSLLQLGKYHTNSSAEQRVQLDLGLWD---------- 216
Query: 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
+F L T + I FA ++PGF+ L DQ L +SA L++ +LR+ R E
Sbjct: 217 -----KFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQ 271
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A++LI
Sbjct: 272 DTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAISLI 325
>gi|158702320|gb|ABW77511.1| retinoic acid receptor gamma a [Salmo salar]
Length = 504
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 130/294 (44%), Gaps = 46/294 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 77 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQK 136
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D +K K + PP S Y LE + +
Sbjct: 137 CFEVGMSKEAVRNDR---------NKKKKDVKEELVPPES-----YELSGELEELVNKVS 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCK-EDQELLFQSASLELFYREPNPLEPPIAE 221
K Q D P L K Q L+L +
Sbjct: 183 KAHQ----------------DTFPSLLQLGKYHTNSSAEQRVQLDLGLWD---------- 216
Query: 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
+F L T + I FA ++PGF+ L DQ L +SA L++ +LR+ R E
Sbjct: 217 -----KFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQ 271
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A++LI
Sbjct: 272 DTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAISLI 325
>gi|71040956|gb|AAZ20369.1| RXRb nuclear hormone receptor [Gecarcinus lateralis]
Length = 431
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 148/302 (49%), Gaps = 41/302 (13%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C +++C +DKR+RNRCQ+CR+
Sbjct: 70 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRY 129
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPL-EPPIA 159
QKCL +GM +E V+ + + + + +S + P++ I +P+ E P+
Sbjct: 130 QKCLTMGMKREAVQEERQRTKGDKGDGDTESSCGAISDMPIASIREAELSVDPIDEQPLD 189
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+ ++Q + P S+ C L F AS E P
Sbjct: 190 QGVRLQVPLA----------------PPDSEKCS--FTLPFHPAS-----------EVPC 220
Query: 220 AEPEKIQQFYSLLTTSVDVIRH------FADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
A P +Q S + + D RH +A IP F+DL EDQ +L ++ EL +
Sbjct: 221 ANP--LQDVVSNICQAAD--RHLVQLVEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASF 276
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQC-QRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
++R+ + ++ G+V+ + Q G + + E + M+ID + CL ++
Sbjct: 277 SHRSMGVEDGIVLATGLVIHRSSAHQAGVGAIFDRVLSELVAKMKEMKIDKTELGCLRSI 336
Query: 333 TL 334
L
Sbjct: 337 VL 338
>gi|118344428|ref|NP_001072037.1| nuclear receptor [Ciona intestinalis]
gi|70571031|dbj|BAE06666.1| nuclear receptor [Ciona intestinalis]
Length = 463
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 134/300 (44%), Gaps = 52/300 (17%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VCGD ++ HYGV +CEGCKGFF+R+VQK +Y C +K C ++K R+RCQ+CR QK
Sbjct: 123 CFVCGDKSSGYHYGVASCEGCKGFFRRSVQKNMQYTCHRNKQCLINKSTRSRCQYCRLQK 182
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C+Q GM++E VR D + + N ++ P PE
Sbjct: 183 CIQAGMLRESVRNDR--------------------NKKRGKEKEGKSDQNGVDEPSCSPE 222
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA-- 220
L TSV + + P S+L K Y+ P+P PI
Sbjct: 223 -----IEALVTSVH--KFHVETFPLSSELKK---------------YQIPSP---PIVKD 257
Query: 221 -----EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
+ ++F L T + I FA +PGF D DQ L + A LE+ LR+
Sbjct: 258 TSAKTDSNLWEKFAELSTKCIVKIVEFAKGVPGFQDFTIADQITLLKCACLEVLFLRICS 317
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R E + F +G+ L ++Q + + F QSLH + D + L A+ L+
Sbjct: 318 RFSPEHDTMTFSDGLTLTRKQMRVCGFGPITEQVFSFAQSLHPLNADATEIGLLSAICLV 377
>gi|340721154|ref|XP_003398990.1| PREDICTED: ecdysone-induced protein 75B, isoforms C/D-like isoform
1 [Bombus terrestris]
Length = 895
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 150/300 (50%), Gaps = 25/300 (8%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 89 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRL 148
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++ VR GR+P + K+ ++ A+ + + A
Sbjct: 149 KKCIAVGMSRDAVRF-------GRVPKREKA----------RILAAMQQSSHSRSQEKAV 191
Query: 161 PEKIQQFYSLLTTSV----DVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
+++ LL T V D DK+ +E +L PNP +
Sbjct: 192 AAELEDEQRLLATVVQAHLDTCDFTRDKVAPILVRARETPNYTACPPTLACPL-NPNP-Q 249
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
P + E +Q F + ++ + FA +IPGFS L ++DQ L ++ E+ ++RLA
Sbjct: 250 PLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGFSLLAQDDQVTLLKAGVFEVLLVRLACM 309
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWL-NAILEFCQSLHLMEIDISAFACLCALTLI 335
A+ +I NG VL+++ S +L +++ +F + ++ + + + C++ +I
Sbjct: 310 FDAQTNSMICLNGQVLKRESIHNSSNARFLMDSMFDFAERVNSLRLSDAELGLFCSVVVI 369
>gi|242019559|ref|XP_002430228.1| Ecdysone receptor, putative [Pediculus humanus corporis]
gi|212515324|gb|EEB17490.1| Ecdysone receptor, putative [Pediculus humanus corporis]
Length = 520
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 144/330 (43%), Gaps = 38/330 (11%)
Query: 22 SASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLA 81
S SS PTP +LC VCGD A+ HY TCEGCKGFF+R++ K + Y C
Sbjct: 131 SVDSSDSKKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKY 190
Query: 82 DKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV------RTDSLKGRRGRLPSKPKSPQES 135
+C +D R +CQ CR +KCL VGM E V + + R KP S
Sbjct: 191 GDSCEIDMYMRRKCQECRLKKCLSVGMRPECVVPEIQCEVKRREKKAQREKGKPSSTTNG 250
Query: 136 PPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 195
P ++ A+ EPN TT + A+ G + E
Sbjct: 251 SPELIMADTPAIKTEPN-------------------TTQSHNEKSSAN---GVKPISPEQ 288
Query: 196 QELLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 245
+EL+ + + Y +P+ P E + + +V +I FA +
Sbjct: 289 EELIHRLVYFQNEYEQPSDEDLKRISNAPSEGEDQSDLNFRHITEITILTVQLIVEFAKR 348
Query: 246 IPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDW 305
+PGF L +EDQ L ++ S E+ +LR+A R ++F N + + +
Sbjct: 349 LPGFDKLLREDQIALLKACSSEVMMLRMARRYDVGSDSILFANNQPYTRDSYSLAGMGET 408
Query: 306 LNAILEFCQSLHLMEIDISAFACLCALTLI 335
++ +L FC+ ++ M++D + +A L A+ +
Sbjct: 409 VDDLLRFCRQMYGMKVDNAEYALLTAIVIF 438
>gi|149038526|gb|EDL92856.1| rCG41136, isoform CRA_b [Rattus norvegicus]
Length = 660
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 247 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 306
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K ++ + R N P+
Sbjct: 307 LRKCYEVGMMKGGIRKD----RRGGRMLKHKRQRDDLEGRNEMGTSGDMRAANLWPSPL- 361
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
VI+H P S L + A L Y E +P P
Sbjct: 362 -----------------VIKHTKKNSPALS-LTADQMVSALLDAEPPLIYSEYDP-SRPF 402
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 403 SEASMMGLLTNLADRELVHMINWAKRVPGFGDLNLHDQVHLLECAWLEILMIGLVWRSME 462
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 463 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 519
>gi|224045384|ref|XP_002197406.1| PREDICTED: retinoic acid receptor beta isoform 3 [Taeniopygia
guttata]
Length = 434
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 137/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 67 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 126
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + PSK +S + + + +T E
Sbjct: 127 CFEVGMSKESVRND--RNKKKKEPSKQESTENYEMTAELDDLT----------------E 168
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 169 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 205
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 206 ----KFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQD 261
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 262 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 314
>gi|149038523|gb|EDL92853.1| rCG41136, isoform CRA_a [Rattus norvegicus]
gi|149038524|gb|EDL92854.1| rCG41136, isoform CRA_a [Rattus norvegicus]
gi|149038525|gb|EDL92855.1| rCG41136, isoform CRA_a [Rattus norvegicus]
gi|149038527|gb|EDL92857.1| rCG41136, isoform CRA_a [Rattus norvegicus]
gi|149038528|gb|EDL92858.1| rCG41136, isoform CRA_a [Rattus norvegicus]
gi|262117988|dbj|BAI48013.1| estrogen receptor alpha [Rattus norvegicus]
Length = 600
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 187 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 246
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K ++ + R N P+
Sbjct: 247 LRKCYEVGMMKGGIRKD----RRGGRMLKHKRQRDDLEGRNEMGTSGDMRAANLWPSPL- 301
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
VI+H P S L + A L Y E +P P
Sbjct: 302 -----------------VIKHTKKNSPALS-LTADQMVSALLDAEPPLIYSEYDP-SRPF 342
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 343 SEASMMGLLTNLADRELVHMINWAKRVPGFGDLNLHDQVHLLECAWLEILMIGLVWRSME 402
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 403 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 459
>gi|121582432|ref|NP_001073579.1| ecdysone-induced protein 75 [Apis mellifera]
gi|121308432|dbj|BAF43600.1| ecdysone-induced protein 75 [Apis mellifera]
Length = 900
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 150/300 (50%), Gaps = 25/300 (8%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 66 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRL 125
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++ VR GR+P + K+ ++ A+ + + A
Sbjct: 126 KKCIAVGMSRDAVRF-------GRVPKREKA----------RILAAMQQSSHSRSQEKAV 168
Query: 161 PEKIQQFYSLLTTSV----DVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
+++ LL T V D DK+ +E +L PNP +
Sbjct: 169 AAELEDEQRLLATVVQAHLDTCDFTRDKVAPILVRARETPNYTACPPTLACPL-NPNP-Q 226
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
P + E +Q F + ++ + FA +IPGFS L ++DQ L ++ E+ ++RLA
Sbjct: 227 PLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGFSLLAQDDQVTLLKAGVFEVLLVRLACM 286
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWL-NAILEFCQSLHLMEIDISAFACLCALTLI 335
A+ +I NG VL+++ S +L +++ +F + ++ + + + C++ +I
Sbjct: 287 FDAQTNSMICLNGQVLKRESIHNSSNARFLMDSMFDFAERVNSLRLSDAELGLFCSVVVI 346
>gi|340721156|ref|XP_003398991.1| PREDICTED: ecdysone-induced protein 75B, isoforms C/D-like isoform
2 [Bombus terrestris]
gi|350399401|ref|XP_003485512.1| PREDICTED: ecdysone-induced protein 75B, isoform B-like [Bombus
impatiens]
Length = 872
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 150/300 (50%), Gaps = 25/300 (8%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 66 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRL 125
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++ VR GR+P + K+ ++ A+ + + A
Sbjct: 126 KKCIAVGMSRDAVRF-------GRVPKREKA----------RILAAMQQSSHSRSQEKAV 168
Query: 161 PEKIQQFYSLLTTSV----DVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
+++ LL T V D DK+ +E +L PNP +
Sbjct: 169 AAELEDEQRLLATVVQAHLDTCDFTRDKVAPILVRARETPNYTACPPTLACPL-NPNP-Q 226
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
P + E +Q F + ++ + FA +IPGFS L ++DQ L ++ E+ ++RLA
Sbjct: 227 PLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGFSLLAQDDQVTLLKAGVFEVLLVRLACM 286
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWL-NAILEFCQSLHLMEIDISAFACLCALTLI 335
A+ +I NG VL+++ S +L +++ +F + ++ + + + C++ +I
Sbjct: 287 FDAQTNSMICLNGQVLKRESIHNSSNARFLMDSMFDFAERVNSLRLSDAELGLFCSVVVI 346
>gi|449268313|gb|EMC79183.1| Retinoic acid receptor RXR-gamma, partial [Columba livia]
Length = 451
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 151/342 (44%), Gaps = 78/342 (22%)
Query: 3 LGRSSSSES----PKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVR 58
L SSSE P L ++ S+SPG +CA+CGD ++ +HYGV
Sbjct: 91 LNNVSSSEDVKPLPGLPGIGNMNYPSTSPGS--------LAKHICAICGDRSSGKHYGVY 142
Query: 59 TCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSL 118
+CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ +
Sbjct: 143 SCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQ 202
Query: 119 KGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTS---- 174
+ R R ++ +S PV I LE +A K + + + T S
Sbjct: 203 RSRE-RSENEAESTSNGSEDMPVERI---------LEAELAVEPKTEAYSDVNTESSTND 252
Query: 175 -VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLT 233
V I H ADK Q ++L+
Sbjct: 253 PVTNICHAADK------------------------------------------QLFTLV- 269
Query: 234 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLE 293
+A +IP FSDL EDQ +L ++ EL + ++R+ + ++ G+ +
Sbjct: 270 -------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVH 322
Query: 294 KQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + G + + E + M++D S CL A+ L
Sbjct: 323 RSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 364
>gi|1916861|gb|AAB51250.1| estrogen related receptor alpha [Mus musculus]
Length = 420
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 133/296 (44%), Gaps = 38/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 135 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 194
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 195 A-----------------LVSHLLVVEP-------------------EKLYAMPDPASPD 218
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A +
Sbjct: 219 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQGSL 277
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ R+ G L A L+ + L + ++ + L AL L
Sbjct: 278 PLQDELAFAEDLVLDEEGA-RAAGLGDLGAALQLVRRLQALRLEREEYVLLKALAL 332
>gi|56121|emb|CAA43411.1| estrogen receeptor [Rattus norvegicus]
Length = 600
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 187 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 246
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K ++ + R N P+
Sbjct: 247 LRKCYEVGMMKGGIRKD----RRGGRMLKHKRQRDDLEGRNEMGTSGDMRAANLWPSPL- 301
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
VI+H P S L + A L Y E +P P
Sbjct: 302 -----------------VIKHTKKNSPALS-LTADQMVSALLDAEPPLIYSEYDP-SRPF 342
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 343 SEASMMGLLTNLADRELVHMINWAKRVPGFGDLNLHDQVHLLECAWLEILMIGLVWRSME 402
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 403 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 459
>gi|17367843|sp|Q9W6B3.1|RARB_COTJA RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=Nuclear receptor subfamily 1 group B member 2
gi|4566559|gb|AAD23397.1|AF110729_1 retinoic acid receptor beta-1 [Coturnix coturnix]
Length = 455
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 136/297 (45%), Gaps = 53/297 (17%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 147
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + P+K +S + + + +T E
Sbjct: 148 CFEVGMSKESVRND--RNKKKKEPTKQESTENYEMTAELDDLT----------------E 189
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS----LELFYREPNPLEPP 218
KI++ + F LC+ + SA L+L +
Sbjct: 190 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRVRLDLGLWD------- 226
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R
Sbjct: 227 --------KFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYT 278
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
E + F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 279 PEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 335
>gi|6978815|ref|NP_036821.1| estrogen receptor [Rattus norvegicus]
gi|119600|sp|P06211.1|ESR1_RAT RecName: Full=Estrogen receptor; Short=ER; AltName: Full=ER-alpha;
AltName: Full=Estradiol receptor; AltName: Full=Nuclear
receptor subfamily 3 group A member 1
gi|56111|emb|CAA68287.1| unnamed protein product [Rattus norvegicus]
Length = 600
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 187 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 246
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K ++ + R N P+
Sbjct: 247 LRKCYEVGMMKGGIRKD----RRGGRMLKHKRQRDDLEGRNEMGTSGDMRAANLWPSPL- 301
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
VI+H P S L + A L Y E +P P
Sbjct: 302 -----------------VIKHTKKNSPALS-LTADQMVSALLDAEPPLIYSEYDP-SRPF 342
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 343 SEASMMGLLTNLADRELVHMINWAKRVPGFGDLNLHDQVHLLECAWLEILMIGLVWRSME 402
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 403 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 459
>gi|5731356|gb|AAC36491.2| ecdysteroid receptor EcR-B [Choristoneura fumiferana]
Length = 541
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 154/339 (45%), Gaps = 32/339 (9%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 110 LSPASSINGCSTDGEARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 169
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
K + Y+C AC +D R +CQ CR +KCL VGM E V ++ + + K K
Sbjct: 170 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPET----QCAMKRKEKK 225
Query: 132 PQESPPSPPVSLITALYREPNPL--EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 189
Q+ PVS T P + EPP E +I + + + + IP +
Sbjct: 226 AQKEKDKLPVSTTTVDDHMPPIMQCEPPPPEAARIHEVVPRFLSDKLLETNRQKNIPQLT 285
Query: 190 DLCKEDQELL----------FQSASLELFYREPNPLEPPIAEPEK----IQQFYSLLTTS 235
+Q+ L ++ S E R + E E+ +Q + +
Sbjct: 286 ----ANQQFLIARLIWYQDGYEQPSDEDLKRITQTWQQADDENEESDTPFRQITEMTILT 341
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQ 295
V +I FA +PGF+ + + DQ L ++ S E+ +LR+A R A ++F N +
Sbjct: 342 VQLIVEFAKGLPGFAKISQPDQITLLKACSSEVMMLRVARRYDAASDSVLFANNQAYTRD 401
Query: 296 QCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 402 NYRKAGMAYVIEDLLHFCRCMYSMALDNIHYALLTAVVI 440
>gi|374091626|gb|AEY83591.1| estrogen receptor alpha [Rhinoceros unicornis]
Length = 573
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 160 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 219
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D GR + + + + P + A P+PL
Sbjct: 220 LRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDGEGRNEAGPSGDMRAANFWPSPL----- 274
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+I+H P S L E A L Y + + P
Sbjct: 275 -----------------LIKHTKKNSPALS-LTAEQMVSALLEAEPPLIYSDYDATRP-F 315
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 316 SEASMMGLLTNLADRELVHMINWAKRVPGFVDLSLHDQVHLLECAWLEILMIGLVWRSME 375
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 376 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 432
>gi|357609462|gb|EHJ66465.1| ecdysteroid receptor EcR-B [Danaus plexippus]
Length = 541
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 153/339 (45%), Gaps = 32/339 (9%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 110 LSPASSVNGCSTDGEARRQKKGPVPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 169
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
K + Y+C AC +D R +CQ CR +KCL VGM E V ++ + + K K
Sbjct: 170 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPEN----QCAIKRKEKK 225
Query: 132 PQESPPSPPVSLITALYREPNPL--EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 189
Q PVS T P + +PP E +I + + + ++ IP +
Sbjct: 226 AQREKDKLPVSTTTVDDHMPPIMQCDPPPPEAARIHEVVPRFLSEKLLEQNRQKNIPALT 285
Query: 190 DLCKEDQELL----------FQSASLELFYREPNPLEPPIAEPEK----IQQFYSLLTTS 235
+Q+ L ++ S E R + + E +Q + +
Sbjct: 286 S----NQQFLIARLVWYQDGYEQPSEEDLKRVTQTWQQTDQDDEDSDMPFRQITEMTILT 341
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQ 295
V +I FA +PGF+ + + DQ L ++ S E+ +LR+A R A ++F N +
Sbjct: 342 VQLIVEFAKGLPGFAKISQPDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRD 401
Query: 296 QCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 402 NYRKAGMAYVIEDLLHFCRCMYAMSMDNVHYALLTAIVI 440
>gi|45384512|ref|NP_990657.1| retinoic acid receptor beta [Gallus gallus]
gi|3041719|sp|P22448.2|RARB_CHICK RecName: Full=Retinoic acid receptor beta; Short=RAR-beta; AltName:
Full=Nuclear receptor subfamily 1 group B member 2
gi|871040|emb|CAA40617.1| retinoic acid receptor beta,isoform 1 [Gallus gallus]
Length = 455
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 136/297 (45%), Gaps = 53/297 (17%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 147
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + P+K +S + + + +T E
Sbjct: 148 CFEVGMSKESVRND--RNKKKKEPTKQESTENYEMTAELDDLT----------------E 189
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS----LELFYREPNPLEPP 218
KI++ + F LC+ + SA L+L +
Sbjct: 190 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRVRLDLGLWD------- 226
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R
Sbjct: 227 --------KFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYT 278
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
E + F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 279 PEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 335
>gi|301618913|ref|XP_002938860.1| PREDICTED: estrogen-related receptor gamma-like [Xenopus (Silurana)
tropicalis]
Length = 458
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 136/299 (45%), Gaps = 48/299 (16%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD A+ HYGV +CE CK FFKRT+Q +Y C C + KRRR CQ C
Sbjct: 121 PKRLCLVCGDTASGYHYGVASCEACKAFFKRTIQGNIEYSCPVVNDCEITKRRRKSCQAC 180
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF+KCL VGM+KE VR D ++G R K + P E + P S IT+
Sbjct: 181 RFRKCLNVGMMKEGVRLDRVRGGR----QKYRRPVEVDTADPCSYITS------------ 224
Query: 159 AEPEKIQQFYSLL--TTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYR-EPNPL 215
+S+L T V+ H PG ++F +P+ L
Sbjct: 225 --------HHSVLGKKTMNKVVSHLILVEPG------------------DIFATPDPSVL 258
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
+ + + L+ + + +A +PGFS L DQ L QSA +E+ VL + +
Sbjct: 259 DNDL---RTLTTLCELINRKLLMTIGWAKHVPGFSALSLADQMALLQSAWMEILVLGIVF 315
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ +L +L ++QC+ + N +L+ + +D + L A+ L
Sbjct: 316 RSVTLSEELAVAENFLLGREQCRSTGLLHLYNVLLQLVKKYKKTRLDKEEYVTLKAMAL 374
>gi|383847771|ref|XP_003699526.1| PREDICTED: ecdysone-inducible protein E75-like [Megachile
rotundata]
Length = 782
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 150/300 (50%), Gaps = 25/300 (8%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 65 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRL 124
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++ VR GR+P + K+ ++ A+ + + A
Sbjct: 125 KKCIAVGMSRDAVRF-------GRVPKREKA----------RILAAMQQSSHSRSQEKAV 167
Query: 161 PEKIQQFYSLLTTSV----DVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
+++ LL T V D DK+ +E +L PNP +
Sbjct: 168 AAELEDEQRLLATVVQAHLDTCDFTRDKVAPILVRARETPNYTACPPTLACPL-NPNP-Q 225
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
P + E +Q F + ++ + FA +IPGFS L ++DQ L ++ E+ ++RLA
Sbjct: 226 PLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGFSLLAQDDQVTLLKAGVFEVLLVRLACM 285
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWL-NAILEFCQSLHLMEIDISAFACLCALTLI 335
A+ +I NG VL+++ S +L +++ +F + ++ + + + C++ +I
Sbjct: 286 FDAQTNSMICLNGQVLKRESIHNSSNARFLMDSMFDFAERVNSLRLSDAELGLFCSIVVI 345
>gi|224045380|ref|XP_002197385.1| PREDICTED: retinoic acid receptor beta isoform 1 [Taeniopygia
guttata]
Length = 448
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 137/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + PSK +S + + + +T E
Sbjct: 141 CFEVGMSKESVRND--RNKKKKEPSKQESTENYEMTAELDDLT----------------E 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 183 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|63786|emb|CAA39997.1| retinoic acid binding protein beta isoform [Gallus gallus]
Length = 455
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 136/297 (45%), Gaps = 53/297 (17%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 147
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + P+K +S + + + +T E
Sbjct: 148 CFEVGMSKESVRND--RNKKKKEPTKQESTENYEMTAELDDLT----------------E 189
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS----LELFYREPNPLEPP 218
KI++ + F LC+ + SA L+L +
Sbjct: 190 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRVRLDLGLWD------- 226
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R
Sbjct: 227 --------KFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYT 278
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
E + F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 279 PEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 335
>gi|23504267|emb|CAA52153.2| retinoic acid receptor gamma 2 isoform [Gallus gallus]
Length = 425
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 134/293 (45%), Gaps = 46/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQFCR QK
Sbjct: 79 CFVCSDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQK 138
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K ++ SP+ SP LE I +
Sbjct: 139 CFEVGMSKEAVRNDRNKKKKEVKEEAADSPELSPA----------------LEELIQKVS 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
+ Q F LC+ + + SA + L+P + +
Sbjct: 183 RAHQ-------------------ETFPSLCQLGKYTMSSSAQHRV------QLDPGLWD- 216
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 217 ----KFSELATKCIIKIVEFAKRLPGFTALSIADQITLLKAACLDILMLRICTRYTLEQD 272
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 273 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 325
>gi|157041193|dbj|BAF79666.1| ecdyson receptor alpha isoform [Camponotus japonicus]
Length = 504
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 148/327 (45%), Gaps = 34/327 (10%)
Query: 29 CDTSR---PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKAC 85
CD+ + PTP +LC VCGD A+ HY TCEGCKGFF+R++ + + Y C C
Sbjct: 108 CDSKKRKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITRNAVYQCKYGNGC 167
Query: 86 PVDKRRRNRCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGRLPSKPKSPQESPP 137
+D R +CQ CR +KCL VGM E V+ K ++ + + SP
Sbjct: 168 EIDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEKKAQKEKDKPNSTTMNGSPG 227
Query: 138 SPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 197
S +S + EP AE E SL + I P + E +E
Sbjct: 228 SAGMSEQVGVKMEP-------AEAE------SLSMSGSSGILTPVSPYPCVKPISPEQEE 274
Query: 198 LLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP 247
L+ + S + + +P+ P+E + + +V +I F+ ++P
Sbjct: 275 LINRLVSFQCEFEQPSEDDLKRITNQPMEGEDPSDYSFRHITEITILTVQLIVEFSKRLP 334
Query: 248 GFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLN 307
GF++L +EDQ L ++ S E+ +LR+A + +IF N + + D +
Sbjct: 335 GFNELMREDQITLLKACSSEVMMLRMARKYDVHTDSIIFANNQPYTRDSYNVAGMGDTIE 394
Query: 308 AILEFCQSLHLMEIDISAFACLCALTL 334
+L FC+ ++ M ++ + +A L A+ +
Sbjct: 395 DLLRFCRQMYAMRVNNAEYALLTAIVI 421
>gi|332025807|gb|EGI65964.1| Ecdysone-inducible protein E75 [Acromyrmex echinatior]
Length = 891
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 150/300 (50%), Gaps = 25/300 (8%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 88 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRL 147
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++ VR GR+P + K+ ++ A+ + + A
Sbjct: 148 KKCIAVGMSRDAVRF-------GRVPKREKA----------RILAAMQQSSHSRSQEKAV 190
Query: 161 PEKIQQFYSLLTTSV----DVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
+++ LLTT V D DK+ +E +L PNP +
Sbjct: 191 AAELEDEQRLLTTVVRAHIDTCDFTRDKVTPILARARETPNYTACPPTLACPL-NPNP-Q 248
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
P + E +Q F + ++ + FA +IPGF+ L ++DQ L ++ E+ ++RLA
Sbjct: 249 PLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGFNLLAQDDQVTLLKAGVFEVLLVRLACM 308
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWL-NAILEFCQSLHLMEIDISAFACLCALTLI 335
+ +I NG VL+++ S +L +++ +F + ++ + + + C++ +I
Sbjct: 309 FDGQTNSMICLNGQVLKRESIHNSSNARFLMDSMFDFAERVNSLRLSDAELGLFCSVVVI 368
>gi|47523524|ref|NP_999385.1| estrogen receptor [Sus scrofa]
gi|2500908|sp|Q29040.1|ESR1_PIG RecName: Full=Estrogen receptor; Short=ER; AltName: Full=ER-alpha;
AltName: Full=Estradiol receptor; AltName: Full=Nuclear
receptor subfamily 3 group A member 1
gi|587555|emb|CAA85524.1| estradiol receptor [Sus scrofa]
Length = 595
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 143/301 (47%), Gaps = 33/301 (10%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 182 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 241
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D GR + + + + P + + P+PL
Sbjct: 242 LRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDGEGRNEAVPPGDMRSANLWPSPL----- 296
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE----LFYREPNPL 215
+I+H P S DQ + SA LE + Y E +P
Sbjct: 297 -----------------LIKHTKKNSPVLS--LTADQMI---SALLEAEPPIIYSEYDPT 334
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
P ++E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +
Sbjct: 335 RP-LSEASMMGLLTNLADRELVHMINWAKRVPGFLDLSLHDQVHLLECAWLEILMIGLVW 393
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ KL+F ++L++ Q + G + + +L +M + F CL ++ L
Sbjct: 394 RSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIIL 453
Query: 335 I 335
+
Sbjct: 454 L 454
>gi|213512188|ref|NP_001135390.1| ecdysone receptor isoform B [Tribolium castaneum]
gi|270014267|gb|EFA10715.1| ecdysone receptor isoform B [Tribolium castaneum]
Length = 484
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 157/350 (44%), Gaps = 45/350 (12%)
Query: 2 QLGRSSSSESPKLRHSAPLS-SASSSPGCDTSRPTPPSPSQ---LCAVCGDIAACQHYGV 57
L +S +S + +P S + S+ CD+ + P+P Q LC VCGD A+ HY
Sbjct: 78 HLAKSDTSSASGREDLSPSSLNGYSADSCDSKKKKGPTPRQQEELCLVCGDRASGYHYNA 137
Query: 58 RTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTD- 116
TCEGCKGFF+R++ K + Y C C +D R +CQ CR +KCL VGM E V +
Sbjct: 138 LTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLSVGMRPECVVPEV 197
Query: 117 --SLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTS 174
++K + + + P + P + +EP +++ EK
Sbjct: 198 QCAVKRKEKKAQKEKDKPNSTTNGSPDVI---------KVEPELSDSEKTL--------- 239
Query: 175 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN----------PLEPPIAEPEK 224
G + E +EL+ + + Y P+ P++ +
Sbjct: 240 ----------CNGSKGISPEQEELIHRLVYFQNEYEHPSEEDVKRIINQPMDGEDQCDVR 289
Query: 225 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKL 284
+ + +V +I FA ++PGF L +EDQ L ++ S E+ + R+A R + +
Sbjct: 290 FRHITEITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQTDSI 349
Query: 285 IFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+F N + + + + +L FC++++ M++D + +A L A+ +
Sbjct: 350 LFVNNQPYSRDSYNLAGMGETIEDLLHFCRTMYSMKVDNAEYALLTAIVI 399
>gi|940387|dbj|BAA07890.1| ecdysone receptor [Bombyx mori]
Length = 543
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 154/338 (45%), Gaps = 35/338 (10%)
Query: 20 LSSASSSPGC----DTSR----PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC D R P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 116 LSPASSINGCSADADARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 175
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
K + Y+C AC +D R +CQ CR +KCL VGM E V + PSK K
Sbjct: 176 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVIQE---------PSKNKD 226
Query: 132 PQESPPSP----PVSLITALYREPNPL--EPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
Q PVS T P + +PP E +I + + + ++ I
Sbjct: 227 RQRQKKDKGILLPVSTTTVEDHMPPIMQCDPPPPEAARIHEVVPRYLSEKLMEQNRQKNI 286
Query: 186 PGFSDLCKEDQELLFQSASLELFYREPNP-----LEPPIAEPEK----IQQFYSLLTTSV 236
P S + L+ + + Y +P+ + E E+ +Q + +V
Sbjct: 287 PPLS---ANQKSLIARLVWYQEGYEQPSDEDLKRVTQSDEEDEESDLPFRQITEMTILTV 343
Query: 237 DVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ 296
+I FA +PGFS + + DQ L +++S E+ +LR+A R A ++F N +
Sbjct: 344 QLIVEFAKGLPGFSKISQSDQITLLKASSSEVMMLRVARRYDAASDSVLFANNKAYTRDN 403
Query: 297 CQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+++ + +L FC+ + M +D FA L A+ +
Sbjct: 404 YRKAGMAYVIEDLLHFCRCMFAMGMDNVHFALLTAIVI 441
>gi|5713322|gb|AAC61596.2| ecdysone receptor isoform A [Choristoneura fumiferana]
Length = 513
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 99/339 (29%), Positives = 154/339 (45%), Gaps = 32/339 (9%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 82 LSPASSINGCSTDGEARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 141
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
K + Y+C AC +D R +CQ CR +KCL VGM E V ++ + + K K
Sbjct: 142 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPET----QCAMKRKEKK 197
Query: 132 PQESPPSPPVSLITALYREPNPL--EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 189
Q+ PVS T P + EPP E +I + + + + IP +
Sbjct: 198 AQKEKDKLPVSTTTVDDHMPPIMQCEPPPPEAARIHEVVPRFLSDKLLETNRQKNIPQLT 257
Query: 190 DLCKEDQELL----------FQSASLELFYREPNPLEPPIAEPEK----IQQFYSLLTTS 235
+Q+ L ++ S E R + E E+ +Q + +
Sbjct: 258 ----ANQQFLIARLIWYQDGYEQPSDEDLKRITQTWQQADDENEESDTPFRQITEMTILT 313
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQ 295
V +I FA +PGF+ + + DQ L ++ S E+ +LR+A R A ++F N +
Sbjct: 314 VQLIVEFAKGLPGFAKISQPDQITLLKACSSEVMMLRVARRYDAASDSVLFANNQAYTRD 373
Query: 296 QCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 374 NYRKAGMAYVIEDLLHFCRCMYSMALDNIHYALLTAVVI 412
>gi|344286664|ref|XP_003415077.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Loxodonta
africana]
Length = 489
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 150/338 (44%), Gaps = 78/338 (23%)
Query: 7 SSSES----PKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEG 62
SSSE P L ++ S+SPG P +CA+CGD ++ +HYGV +CEG
Sbjct: 133 SSSEDIKPLPGLPGIGNMNYLSTSPG--------PLVKHICAICGDRSSGKHYGVYSCEG 184
Query: 63 CKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRR 122
CKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ + + R
Sbjct: 185 CKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRE 244
Query: 123 GRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTS-----VDV 177
R S+ +S PV I LE +A K + + + + V
Sbjct: 245 -RAESEAESASNGHEDMPVERI---------LEAELAVEPKTESYGDMNMENSTNDPVTN 294
Query: 178 IRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVD 237
I H ADK Q ++L+
Sbjct: 295 ICHAADK------------------------------------------QLFTLV----- 307
Query: 238 VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC 297
+A +IP FSDL EDQ +L ++ EL + ++R+ + ++ G+ + +
Sbjct: 308 ---EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSA 364
Query: 298 QRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ G + + E + M++D S CL A+ L
Sbjct: 365 HSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 402
>gi|164633022|gb|ABY64724.1| estrogen receptor alpha [Ateles paniscus]
Length = 595
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 182 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 241
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D GR + + + + A+ P+PL
Sbjct: 242 LRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDGEGRNEVGSTGDMRAVNLWPSPL----- 296
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+I+H P S L + A + Y E +P P
Sbjct: 297 -----------------MIKHSKKNSPALS-LTADQMVSALLDAEPPIIYSEYDPTRP-F 337
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 338 SEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 397
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 398 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 454
>gi|15418805|gb|AAK52104.1| estrogen receptor alpha [Ovis aries]
Length = 431
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 142/301 (47%), Gaps = 33/301 (10%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 18 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 77
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K ++ ++ + R N PI
Sbjct: 78 LRKCYEVGMMKGGIRKD----RRGGRMLKHKRQRDDGEGRNEAVPSGDMRATNLWPSPI- 132
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE----LFYREPNPL 215
+I+H P S DQ + SA LE + Y E + L
Sbjct: 133 -----------------MIKHTKKNSPVLS--LTADQMI---SALLEAEPPIIYSEYD-L 169
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
P +E + L + + ++A K+PGF DL DQ L + A LE+ ++ L +
Sbjct: 170 PDPFSEASMMGLLTGLADRELVHMINWAKKVPGFVDLALHDQVHLLECAWLEILMIGLVW 229
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ KL+F ++L++ Q + G + + +L +M + F CL ++ L
Sbjct: 230 RSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIIL 289
Query: 335 I 335
+
Sbjct: 290 L 290
>gi|195984199|gb|ACG63788.1| retinoid X receptor splice variant RXR-II [Carcinus maenas]
Length = 441
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 159/350 (45%), Gaps = 74/350 (21%)
Query: 17 SAPLSSASSSPGCDTSRPT--PPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKR 69
++P + SS+ ++ PT PPS LC++CGD A+ +HYGV +CEGCKGFFKR
Sbjct: 41 TSPFTIGSSNTSGLSTSPTQYPPSHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKR 100
Query: 70 TVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKP 129
TV+K Y C +++C +DKR+RNRCQ+CR+QKCL +GM +E V+ + + + +
Sbjct: 101 TVRKDLTYACREERSCTIDKRQRNRCQYCRYQKCLSMGMKREAVQEERQRTKGDKGDGDT 160
Query: 130 KSPQESPPSPPVSLITAL---------------YREPNPLEPPIAEPEKIQQFYSLLTTS 174
+S + P++ I R PN + P+A PE I
Sbjct: 161 ESSCGAISDMPIASIREAELSVDPIDEQPLDQGVRPPNLCQVPLAGPETID--------- 211
Query: 175 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI---QQFYSL 231
S+ C S L + P++E + Q S
Sbjct: 212 -------------ISEKC-----------SFTLPFH-------PVSEVTNVNPLQDVVSN 240
Query: 232 LTTSVDVIRH------FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
+ + D RH +A IP F+DL EDQ +L ++ EL + ++R+ + ++
Sbjct: 241 ICQAAD--RHLVQLVEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGIV 298
Query: 286 FCNGVVLEKQQC-QRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G+V+ + Q G + + E + M++D + CL A+ L
Sbjct: 299 LATGLVVHRSSAHQAGVGAIFDRVLSELVAKVKEMKMDKTELGCLRAIVL 348
>gi|327279969|ref|XP_003224727.1| PREDICTED: estrogen receptor [Anolis carolinensis]
Length = 586
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 142/301 (47%), Gaps = 34/301 (11%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 174 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 233
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----TALYREPNPLE 155
+KC +VGM+K +R D R GR+ + +E+ +L TAL+ P+PL
Sbjct: 234 LRKCYEVGMMKGGIRKDR---RGGRMLKHKRQREENDSRNAGALTEARSTALW--PSPL- 287
Query: 156 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
+I+H P S + L + A + Y E +P
Sbjct: 288 ---------------------MIKHSKKNSPALSLTADQMVSALLE-AEPPVVYSEYDP- 324
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
P E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +
Sbjct: 325 SRPFNEASVMTLLTNLADRELVHMINWAKRVPGFVDLALHDQVHLLECAWLEILMVGLVW 384
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ KL+F ++L++ + G + + +L +M + F CL ++ L
Sbjct: 385 RSMEHPGKLLFAPNLLLDRSHGKVVEGFVEIFDMLLATSSRFRMMNVRGEEFVCLKSIIL 444
Query: 335 I 335
+
Sbjct: 445 L 445
>gi|154818351|gb|ABS87644.1| EcRB1 [Bombyx mori]
Length = 543
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 154/338 (45%), Gaps = 35/338 (10%)
Query: 20 LSSASSSPGC----DTSR----PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC D R P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 116 LSPASSINGCSADADARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 175
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
K + Y+C AC +D R +CQ CR +KCL VGM E V + PSK K
Sbjct: 176 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVIQE---------PSKNKD 226
Query: 132 PQESPPSP----PVSLITALYREPNPL--EPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
Q PVS T P + +PP E +I + + + ++ I
Sbjct: 227 RQRQKKDKGILLPVSTTTVEDHMPPIMQCDPPPPEAARIHEVVPRYLSEKLMEQNRQKNI 286
Query: 186 PGFSDLCKEDQELLFQSASLELFYREPNP-----LEPPIAEPEK----IQQFYSLLTTSV 236
P S + L+ + + Y +P+ + E E+ +Q + +V
Sbjct: 287 PPLS---ANQKSLIARLVWYQEGYEQPSDEDLKRVTQSDEEDEESDLPFRQITEMTILTV 343
Query: 237 DVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ 296
+I FA +PGFS + + DQ L +++S E+ +LR+A R A ++F N +
Sbjct: 344 QLIVEFAKGLPGFSKISQSDQITLLKASSSEVMMLRVARRYDAASDSVLFANNKAYTRDN 403
Query: 297 CQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+++ + +L FC+ + M +D FA L A+ +
Sbjct: 404 YRKAGMAYVIEDLLHFCRCMFAMGMDNVHFALLTAIVI 441
>gi|168812206|gb|ACA30302.1| ecdysone receptor [Spodoptera exigua]
Length = 588
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 152/345 (44%), Gaps = 45/345 (13%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 157 LSPASSINGCSTDGEARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 216
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV--------RTDSLKGRRG 123
K + Y+C AC +D R +CQ CR +KCL VGM E V + + K +R
Sbjct: 217 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKREEKKAQR- 275
Query: 124 RLPSKPKSP--------------QESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYS 169
K KSP Q PP P + I + P L + E +++
Sbjct: 276 ---EKDKSPVSTTTVDDHMPPIMQCDPPPPEAARIHEVV--PRFLNEKLMEQNRLKNVPP 330
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFY 229
L +I G+ +ED + + Q+ + E + +Q
Sbjct: 331 LTANQKSLIARLVWYQEGYEQPSEEDLKRVTQTWQSDEDEEESD---------MPFRQIT 381
Query: 230 SLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNG 289
+ +V +I FA +PGF+ + + DQ L ++ S E+ +LR+A R A ++F N
Sbjct: 382 EMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANN 441
Query: 290 VVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 442 QAYTRDNYRKAGMAYVIEDLLHFCRCMYSMMVDNVHYALLTAIVI 486
>gi|432888946|ref|XP_004075101.1| PREDICTED: retinoic acid receptor RXR-alpha-A [Oryzias latipes]
Length = 471
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 162/342 (47%), Gaps = 71/342 (20%)
Query: 9 SESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQH 54
S SP+L ++P++S SSS G + P PS +CA+CGD ++ +H
Sbjct: 98 SVSPQL--NSPMNSVSSSEDIKPPLGLNGMMKVPAKPSGMALSLTKHICAICGDRSSGKH 155
Query: 55 YGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVR 114
YGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+
Sbjct: 156 YGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCIIDKRQRNRCQYCRYQKCLAMGMKREAVQ 215
Query: 115 TDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQ-QFYSLLTT 173
+ R R K ++ ES T+ E P+E + E ++ + + + T
Sbjct: 216 EE-----RQRAKEKNENEVES---------TSCVNEDMPVEKILEAEEAVEPKTETYIET 261
Query: 174 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLT 233
++ V + + +++C Q+A +LF
Sbjct: 262 NLSVPSNSPND--PVTNIC--------QAADKQLF------------------------- 286
Query: 234 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLE 293
+ +A +IP FSDL +DQ +L ++ EL + ++R+ A ++ G+ +
Sbjct: 287 ----TLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVH 342
Query: 294 KQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + G + + E + M++D + CL A+ L
Sbjct: 343 RNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 384
>gi|133907526|gb|ABO42263.1| estrogen-related receptor isoform 1 [Halocynthia roretzi]
Length = 527
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 142/301 (47%), Gaps = 51/301 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+P +LC VCGD+A+ HYGV +CE CK FFKRT+Q Y C + C + KRRR CQ
Sbjct: 192 APKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIDYTCPSSNDCEITKRRRKSCQS 251
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSL--ITALYREPNPLE 155
CRF KCL+VGM++E VR D ++G R + K S P++ + AL + + L
Sbjct: 252 CRFTKCLRVGMLREGVRLDRVRGGRQKYKKKTTSENTERFQLPITQHQLPALNKVVSHL- 310
Query: 156 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK-EDQELLFQSASLELFYREPNP 214
+AEP K+ T+ + S LC D+EL+
Sbjct: 311 -LLAEPGKL--------TTAQNTKEAKGGENILSTLCDLADRELV--------------- 346
Query: 215 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
VI +A IPGFS L DQ L QSA +E+ +L +A
Sbjct: 347 -----------------------VIIGWAKHIPGFSILPLADQMALLQSAWMEILILGIA 383
Query: 275 YRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+R+ + +F + VL+ + CQ + + +A+L+ + L + + + F + A+ L
Sbjct: 384 FRSLQFGDEHVFADDFVLDVETCQSTGLSELSSALLQLQRRLKSHKPNKAEFVVMKAIAL 443
Query: 335 I 335
+
Sbjct: 444 V 444
>gi|86439690|emb|CAJ01677.1| nuclear receptor [Blattella germanica]
Length = 570
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 146/335 (43%), Gaps = 51/335 (15%)
Query: 22 SASSSPGCDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV 78
+ S GCD + P+P Q LC VCGD A+ HY TCEGCKGFF+R++ K + Y
Sbjct: 184 NGHSFDGCDAKKKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQ 243
Query: 79 CLADKACPVDKRRRNRCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGRLPSKPK 130
C C +D R +CQ CR +KCL VGM E V+ K ++ + KP
Sbjct: 244 CKYGNNCEIDMYMRRKCQECRLKKCLSVGMRPECVVPEYQCAVKRKEKKAQKDK--DKPN 301
Query: 131 SPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 190
S SP V ++ + EPEK+ + G
Sbjct: 302 STTNG--SPEVVMMKETGTK--------VEPEKLPT------------------VNGVKP 333
Query: 191 LCKEDQELLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTTSVDVIR 240
+ E +EL+ + + Y +P+ P E K + + +V +I
Sbjct: 334 VSPEQEELITRLVYFQNEYEQPSEEDLKRITNQPTEGEDQSDLKFRHITEITILTVQLIV 393
Query: 241 HFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS 300
FA ++PGF L +EDQ L ++ S E+ + R+A R ++F N + +
Sbjct: 394 EFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVNSDSILFANNQPYTRDSYSLA 453
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + +L FC+ ++ M++D + +A L A+ +
Sbjct: 454 GLGETIEDMLRFCRQMYAMKVDNAEYALLTAIVIF 488
>gi|340714311|ref|XP_003395673.1| PREDICTED: steroid hormone receptor ERR2-like isoform 2 [Bombus
terrestris]
gi|350417321|ref|XP_003491365.1| PREDICTED: steroid hormone receptor ERR2-like isoform 2 [Bombus
impatiens]
Length = 430
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 138/298 (46%), Gaps = 56/298 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A+ C ++KRRR CQ C
Sbjct: 101 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPANGECEINKRRRKACQAC 160
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRG--RLPSKPKSPQESPPSPPVSLITALYREPNPLEP 156
RFQKCL+ GM+KE VR D ++G R R + P +P ++ P ++ AL
Sbjct: 161 RFQKCLRQGMLKEGVRLDRVRGGRQKYRRSTDPYTPVKTAPLEDNKMLEAL--------- 211
Query: 157 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
EP+ +Q V I H D DQ +L Q + +L+ RE
Sbjct: 212 AACEPDMLQ---------VSNISHTLDT----------DQRVLGQLS--DLYDREL---- 246
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
V +I +A +IPGFS L DQ L QS E+ LA+R
Sbjct: 247 -------------------VGII-GWAKQIPGFSSLALNDQMRLLQSTWAEILTFSLAWR 286
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +L F L+++ + + ++ + L + + + L AL L
Sbjct: 287 SMPNNGRLRFAQDFTLDERLARECHCTELYTHCIQIVERLQRLGLTREEYYVLKALIL 344
>gi|164633024|gb|ABY64725.1| estrogen receptor alpha [Cebus apella]
Length = 595
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 182 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 241
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K ++ T R N P+
Sbjct: 242 LRKCYEVGMMKGGIRKD----RRGGRMLKHKRQRDDGEGRNEVGSTGDMRAANLWPSPL- 296
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+I+H P S L + A + Y E +P P
Sbjct: 297 -----------------MIKHSKKNSPALS-LTADQMVSALLDAEPPIIYSEYDPTRP-F 337
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 338 SEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 397
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 398 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 454
>gi|371940918|ref|NP_001243138.1| retinoic acid receptor RXR-gamma [Taeniopygia guttata]
Length = 468
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 151/343 (44%), Gaps = 78/343 (22%)
Query: 3 LGRSSSSES----PKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVR 58
L SSSE P L ++ S+SPG +CA+CGD ++ +HYGV
Sbjct: 108 LNNVSSSEDVKPLPGLPGMGNMNYPSTSPGSLAK--------HICAICGDRSSGKHYGVY 159
Query: 59 TCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSL 118
+CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ +
Sbjct: 160 SCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQ 219
Query: 119 KGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTS---- 174
+ R R ++ +S PV I LE +A K + + + T S
Sbjct: 220 RSRE-RSENEAESTSSGSEDMPVERI---------LEAELAVEPKTEAYSDVGTESSTND 269
Query: 175 -VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLT 233
V I H ADK Q ++L+
Sbjct: 270 PVTNICHAADK------------------------------------------QLFTLV- 286
Query: 234 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLE 293
+A +IP FSDL EDQ +L ++ EL + ++R+ + ++ G+ +
Sbjct: 287 -------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVH 339
Query: 294 KQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + G + + E + M++D S CL A+ L
Sbjct: 340 RSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 382
>gi|62979|emb|CAA40615.1| retinoic acid receptor beta,isoform 4 [Gallus gallus]
Length = 434
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 137/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 67 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 126
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + P+K +S + + + +T E
Sbjct: 127 CFEVGMSKESVRND--RNKKKKEPTKQESTENYEMTAELDDLT----------------E 168
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 169 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 205
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 206 ----KFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQD 261
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 262 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 314
>gi|218156204|dbj|BAH03334.1| retinoic acid receptor 2 [Lethenteron camtschaticum]
Length = 479
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 131/295 (44%), Gaps = 49/295 (16%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 91 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCPRDKGCVINKVTRNRCQYCRLQK 150
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K K K + PS +++ P +E I +
Sbjct: 151 CFEVGMSKESVRNDRNK--------KKKDVAKQEPSETLAM-------PAEMEVLIEKVH 195
Query: 163 KIQQ--FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
K Q F SL + AD L+L +
Sbjct: 196 KAHQETFPSLYQLGKYTMNSSAD-----------------HRVQLDLGLWD--------- 229
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+F L T + I FA ++PGF +L DQ L ++A L++ +LR+ R E
Sbjct: 230 ------KFSELATKCIIKIVEFAKRLPGFVNLSIADQITLLKAACLDILILRICTRYTPE 283
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L + +D + L A+ LI
Sbjct: 284 QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLSVDDTEAGLLAAICLI 338
>gi|390462190|ref|XP_003732811.1| PREDICTED: estrogen receptor isoform 2 [Callithrix jacchus]
Length = 595
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 182 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 241
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K ++ T R N P+
Sbjct: 242 LRKCYEVGMMKGGIRKD----RRGGRMLKHKRQRDDGEGRNEVGSTGDLRAANLWPSPL- 296
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+I+H P S L + A + Y E +P P
Sbjct: 297 -----------------MIKHSKKNSPALS-LTADQMVSALLDAEPPIIYSEYDPTRP-F 337
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 338 SEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 397
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 398 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 454
>gi|133907528|gb|ABO42264.1| estrogen-related receptor isoform-2 [Halocynthia roretzi]
Length = 527
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 142/301 (47%), Gaps = 51/301 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+P +LC VCGD+A+ HYGV +CE CK FFKRT+Q Y C + C + KRRR CQ
Sbjct: 192 APKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIDYTCPSSNDCEITKRRRKSCQS 251
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSL--ITALYREPNPLE 155
CRF KCL+VGM++E VR D ++G R + K S P++ + AL + + L
Sbjct: 252 CRFTKCLRVGMLREGVRLDRVRGGRQKYKKKTTSENTERFQLPITQHQLPALNKVVSHL- 310
Query: 156 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK-EDQELLFQSASLELFYREPNP 214
+AEP K+ T+ + S LC D+EL+
Sbjct: 311 -LLAEPGKL--------TTAQNTKEAKGGENILSTLCDLADRELV--------------- 346
Query: 215 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
VI +A IPGFS L DQ L QSA +E+ +L +A
Sbjct: 347 -----------------------VIIGWAKHIPGFSILPLADQMALLQSAWMEILILGIA 383
Query: 275 YRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+R+ + +F + VL+ + CQ + + +A+L+ + L + + + F + A+ L
Sbjct: 384 FRSLQFGDEHVFADDFVLDVETCQSTGLSELSSALLQLQRRLKSHKPNKAEFVVMEAIAL 443
Query: 335 I 335
+
Sbjct: 444 V 444
>gi|325930187|gb|ADZ45552.1| retinoid X receptor gamma [Taeniopygia guttata]
Length = 468
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 151/343 (44%), Gaps = 78/343 (22%)
Query: 3 LGRSSSSES----PKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVR 58
L SSSE P L ++ S+SPG +CA+CGD ++ +HYGV
Sbjct: 108 LNNVSSSEDVKPLPGLPGMGNMNYPSTSPGSLAK--------HICAICGDRSSGKHYGVY 159
Query: 59 TCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSL 118
+CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ +
Sbjct: 160 SCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQ 219
Query: 119 KGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTS---- 174
+ R R ++ +S PV I LE +A K + + + T S
Sbjct: 220 RSRE-RSENEAESTSSGSEDMPVERI---------LEAELAVEPKTEAYSDVGTESSTND 269
Query: 175 -VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLT 233
V I H ADK Q ++L+
Sbjct: 270 PVTNICHAADK------------------------------------------QLFTLV- 286
Query: 234 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLE 293
+A +IP FSDL EDQ +L ++ EL + ++R+ + ++ G+ +
Sbjct: 287 -------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVH 339
Query: 294 KQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + G + + E + M++D S CL A+ L
Sbjct: 340 RSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 382
>gi|301299145|gb|ADK66917.1| ecdysone receptor A [Spodoptera exigua]
Length = 514
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 150/341 (43%), Gaps = 37/341 (10%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 83 LSPASSINGCSTDGEARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 142
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV----------RTDSLKGR 121
K + Y+C AC +D R +CQ CR +KCL VGM E V + +
Sbjct: 143 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRKEKKAQRE 202
Query: 122 RGRLP--------SKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTT 173
+ +LP P Q PP P + I + P L + E +++ L
Sbjct: 203 KDKLPVSTTTVDDHMPPIMQCDPPPPEAARIHEVV--PRFLNEKLMEQNRLKNVPPLTAN 260
Query: 174 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLT 233
+I G+ +ED + + Q+ + E + +Q +
Sbjct: 261 QKSLIARLVWYQEGYEQPSEEDLKRVTQTWQSDEDEEESD---------MPFRQITEMTI 311
Query: 234 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLE 293
+V +I FA +PGF+ + + DQ L ++ S E+ +LR+A R A ++F N
Sbjct: 312 LTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYT 371
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 372 RDNYRKAGMAYVIEDLLHFCRCMYSMMVDNVHYALLTAIVI 412
>gi|324507402|gb|ADY43138.1| Nuclear hormone receptor E75 [Ascaris suum]
Length = 631
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 159/339 (46%), Gaps = 47/339 (13%)
Query: 10 ESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKR 69
+S + + A SS G TS LC VCGD A+ HYGV +CEGCKGFF+R
Sbjct: 216 DSQRTDEENTFAGADSSAGKHTS---------LCKVCGDKASGYHYGVTSCEGCKGFFRR 266
Query: 70 TVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKP 129
++QK +Y CL D C V + RNRCQ+CRF+KCL VGM ++ V R GR+P +
Sbjct: 267 SIQKQMEYRCLRDGRCQVYRLNRNRCQYCRFKKCLAVGMSRDSV-------RYGRVPKRS 319
Query: 130 KSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTS----------VDVIR 179
+ V++I A + L E +K F +L+ S + I+
Sbjct: 320 REGTTEARDNCVAVIDADIEAQSEL-----ERDKSAIFDIILSVSHAHKANCNYIEEKIK 374
Query: 180 HFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVI 239
H + F+ D+ +F++ + + + ++I + +L + I
Sbjct: 375 HMQPRAINFN----FDRNEMFENGCVN---------SAEMLDEQRIIMWQTLSGKILPEI 421
Query: 240 RH---FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ 296
+H FA IPGF L + DQ L ++ E++++R++ L+ +G ++ +QQ
Sbjct: 422 QHIVEFAKSIPGFLRLDQSDQVSLIKNGFFEMWLVRVSRVFNGLTGSLMLADGNIVSRQQ 481
Query: 297 CQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ +G D + ++ F S+ +++ A+ L+
Sbjct: 482 LEIIYGCDLTSMMINFSISISALQLSDGEVGIFTAVVLL 520
>gi|157136394|ref|XP_001663736.1| estrogen-related receptor (ERR) [Aedes aegypti]
gi|108869963|gb|EAT34188.1| AAEL013546-PA [Aedes aegypti]
Length = 447
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 106/338 (31%), Positives = 156/338 (46%), Gaps = 29/338 (8%)
Query: 4 GRSSSSESPKLRHSAPLSSASSSPGCDTSRPTPPS---PSQLCAVCGDIAACQHYGVRTC 60
G S SP + + +SA G D++ P +LC VCGD+A+ HYGV +C
Sbjct: 47 GGPHSPGSPDRQFCSSTTSAIGDFGSDSTNQDAIKEEIPRRLCLVCGDVASGFHYGVASC 106
Query: 61 EGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKG 120
E CK FFKRT+Q +Y C A C ++KRRR CQ CRF+KCL +GM+KE VR D ++G
Sbjct: 107 EACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFRKCLLMGMLKEGVRLDRVRG 166
Query: 121 RRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH 180
R + + +P + P L L + + P E KI + S I H
Sbjct: 167 GRQKY-------RRNPCANPYQL--QLTQSSSQYTPQTLEDIKILEVLSSFEPDPLTIGH 217
Query: 181 FADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDV-- 238
GF DL + S+ + + + P A+ Q+ S+L+ D
Sbjct: 218 ------GF-DLMNSNGS---SSSDHDGDGKATDSRMPMGADA---QEMLSVLSDIYDKEL 264
Query: 239 --IRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ 296
+ +A +IPGF+DL DQ L Q + EL L LA+R+ KL F L+++
Sbjct: 265 VGVIGWAKQIPGFTDLPLNDQMRLLQVSWAELLTLMLAHRSIPFSGKLYFATDFWLDERS 324
Query: 297 CQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ D N + + Q L + + L AL+L
Sbjct: 325 AKECGALDLYNHLAQITQRLEKISATKEEYYLLKALSL 362
>gi|193299805|gb|ACF17956.1| estrogen receptor alpha variant U2 [Mus musculus]
gi|193299809|gb|ACF17958.1| estrogen receptor alpha variant U1 [Mus musculus]
Length = 596
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 183 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 242
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K ++ + R N P+
Sbjct: 243 LRKCYEVGMMKGGIRKD----RRGGRMLKHKRQRDDLEGRNEMGASGDMRAANLWPSPL- 297
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
VI+H P S L + A + Y E +P P
Sbjct: 298 -----------------VIKHTKKNSPALS-LTADQMVSALLDAEPPMIYSEYDP-SRPF 338
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 339 SEASMMGLLTNLADRELVHMINWAKRVPGFGDLNLHDQVHLLECAWLEILMIGLVWRSME 398
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 399 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 455
>gi|6679695|ref|NP_031982.1| estrogen receptor [Mus musculus]
gi|119599|sp|P19785.1|ESR1_MOUSE RecName: Full=Estrogen receptor; Short=ER; AltName: Full=ER-alpha;
AltName: Full=Estradiol receptor; AltName: Full=Nuclear
receptor subfamily 3 group A member 1
gi|193180|gb|AAA37580.1| estrogen receptor [Mus musculus]
gi|26331560|dbj|BAC29510.1| unnamed protein product [Mus musculus]
gi|26334545|dbj|BAC30973.1| unnamed protein product [Mus musculus]
gi|148671634|gb|EDL03581.1| estrogen receptor 1 (alpha), isoform CRA_b [Mus musculus]
gi|148671635|gb|EDL03582.1| estrogen receptor 1 (alpha), isoform CRA_b [Mus musculus]
gi|148671636|gb|EDL03583.1| estrogen receptor 1 (alpha), isoform CRA_b [Mus musculus]
gi|189442821|gb|AAI67246.1| Estrogen receptor 1 (alpha) [synthetic construct]
gi|320118649|dbj|BAJ65337.1| estrogen receptor alpha [Mus musculus]
Length = 599
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 186 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 245
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RRG K K ++ + R N P+
Sbjct: 246 LRKCYEVGMMKGGIRKD----RRGGRMLKHKRQRDDLEGRNEMGASGDMRAANLWPSPL- 300
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
VI+H P S L + A + Y E +P P
Sbjct: 301 -----------------VIKHTKKNSPALS-LTADQMVSALLDAEPPMIYSEYDP-SRPF 341
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 342 SEASMMGLLTNLADRELVHMINWAKRVPGFGDLNLHDQVHLLECAWLEILMIGLVWRSME 401
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 402 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 458
>gi|431910318|gb|ELK13391.1| Steroid hormone receptor ERR1 [Pteropus alecto]
Length = 504
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 135/295 (45%), Gaps = 37/295 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 159 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 218
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 219 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFSAGPLAVAGGPRKTAP-- 276
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ L + + V+ +K+ D D L + +LF RE
Sbjct: 277 ---------VNALVSHLLVVE--PEKLYAMPDPAGPDGHLPAVATLCDLFDRE------- 318
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 319 -----------------IVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 361
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALT 333
+L F +VL+++ + + + A+L+ + L + ++ AL
Sbjct: 362 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLERGGVLKALALA 416
>gi|326921997|ref|XP_003207239.1| PREDICTED: retinoic acid receptor beta-like [Meleagris gallopavo]
gi|4566561|gb|AAD23398.1|AF110730_1 retinoic acid receptor beta-2 [Coturnix coturnix]
gi|62977|emb|CAA40616.1| retinoic acid receptor beta [Gallus gallus]
gi|227549|prf||1706356A retinoic acid receptor
Length = 448
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 137/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + P+K +S + + + +T E
Sbjct: 141 CFEVGMSKESVRND--RNKKKKEPTKQESTENYEMTAELDDLT----------------E 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 183 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|340714309|ref|XP_003395672.1| PREDICTED: steroid hormone receptor ERR2-like isoform 1 [Bombus
terrestris]
gi|350417319|ref|XP_003491364.1| PREDICTED: steroid hormone receptor ERR2-like isoform 1 [Bombus
impatiens]
Length = 434
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 138/298 (46%), Gaps = 56/298 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A+ C ++KRRR CQ C
Sbjct: 105 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPANGECEINKRRRKACQAC 164
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRG--RLPSKPKSPQESPPSPPVSLITALYREPNPLEP 156
RFQKCL+ GM+KE VR D ++G R R + P +P ++ P ++ AL
Sbjct: 165 RFQKCLRQGMLKEGVRLDRVRGGRQKYRRSTDPYTPVKTAPLEDNKMLEAL--------- 215
Query: 157 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
EP+ +Q V I H D DQ +L Q + +L+ RE
Sbjct: 216 AACEPDMLQ---------VSNISHTLDT----------DQRVLGQLS--DLYDREL---- 250
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
V +I +A +IPGFS L DQ L QS E+ LA+R
Sbjct: 251 -------------------VGII-GWAKQIPGFSSLALNDQMRLLQSTWAEILTFSLAWR 290
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +L F L+++ + + ++ + L + + + L AL L
Sbjct: 291 SMPNNGRLRFAQDFTLDERLARECHCTELYTHCIQIVERLQRLGLTREEYYVLKALIL 348
>gi|283825466|gb|ADB43256.1| estrogen-related receptor [Scylla paramamosain]
Length = 500
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 134/300 (44%), Gaps = 52/300 (17%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
P + C VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C ++KRRR CQ
Sbjct: 165 GPKRSCLVCGDIASGFHYGVASCEACKAFFKRTIQGNIEYTCPAANDCEINKRRRKACQA 224
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSP--QESPPSPPVSLITALYREPNPLE 155
CRF KCL VGM+KE VR D ++G R + +SP + P VSL E N L
Sbjct: 225 CRFHKCLHVGMLKEGVRLDRVRGGRQKYRRTTESPFSLQQMPVKKVSL------EDNKLL 278
Query: 156 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
+ E D + SD+ D + S +L+ RE
Sbjct: 279 KSLISCE-------------------PDSLYALSDVTVSDADFHTISTLADLYDRE---- 315
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
L +++ +A +IPGF++L DQ L QS E+ +L LAY
Sbjct: 316 ----------------LVSTIG----WAKQIPGFTELALNDQMRLLQSTWGEILILGLAY 355
Query: 276 RTR-AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ A L F L+++Q + + +L + L I+ F L AL L
Sbjct: 356 RSMPAHAHTLQFAPDFSLDEKQARECNATELFTQVLGVVERLEQCGINREEFLLLKALVL 415
>gi|326924824|ref|XP_003208625.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Meleagris
gallopavo]
Length = 494
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 137/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 141 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 200
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R ++ +S PV I LE +A
Sbjct: 201 QKCLAMGMKREAVQEERQRSRE-RSENEAESTSGGSEDMPVERI---------LEAELAV 250
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + T S V I H ADK
Sbjct: 251 EPKTEAYSDVNTESSTNDPVTNICHAADK------------------------------- 279
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 280 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 320
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 321 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 380
>gi|63754|emb|CAA42077.1| retinoic acid receptor-beta [Gallus gallus]
Length = 448
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 137/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVTACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + P+K +S + + + +T E
Sbjct: 141 CFEVGMSKESVRND--RNKKKKEPTKQESTENYEMTAELDDLT----------------E 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 183 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|307201567|gb|EFN81329.1| Steroid hormone receptor ERR2 [Harpegnathos saltator]
Length = 426
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 147/335 (43%), Gaps = 65/335 (19%)
Query: 6 SSSSESPKLRH----SAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCE 61
S ESP++ H + PL + D + P +LC VCGD+A+ HYGV +CE
Sbjct: 66 GGSPESPEMHHCSSTTQPLGATD-----DGVKEEDMMPRRLCLVCGDVASGFHYGVASCE 120
Query: 62 GCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGR 121
CK FFKRT+Q +Y C A+ C ++KRRR CQ CRFQKCL+ GM+KE VR D ++G
Sbjct: 121 ACKAFFKRTIQGNIEYTCPANGECEINKRRRKACQACRFQKCLRQGMLKEGVRLDRVRGG 180
Query: 122 RG--RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIR 179
R R + P +P +S ++ AL EP+ +Q
Sbjct: 181 RQKYRRSTDPYTPVKSTTLEDNKMVEAL---------TACEPDMLQ-------------- 217
Query: 180 HFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVI 239
+ S + DQ +L Q + +L+ RE V +I
Sbjct: 218 -----VSNISHTLETDQRVLGQLS--DLYDREL-----------------------VGII 247
Query: 240 RHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR 299
+A +IPGFS L DQ L QS E+ LA+R+ +L F L+++
Sbjct: 248 -GWAKQIPGFSSLALNDQIRLLQSTWAEILTFTLAWRSTPNSGRLRFAQDFTLDERLAHE 306
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
D ++ + + + + + L AL L
Sbjct: 307 CHCMDLYTHCIQIVERIQRLGLTREEYYMLKALIL 341
>gi|312190941|gb|ADQ43369.1| ultraspiracle [Nezara viridula]
Length = 402
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 110/204 (53%), Gaps = 18/204 (8%)
Query: 14 LRHSAPLSSASSSPGCDTSRPTPPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFK 68
+ H++ L + + S + P PP+ LC++CGD A+ +HYGV +CEGCKGFFK
Sbjct: 53 MAHNSVLGNGNKS----LNTPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFK 108
Query: 69 RTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSK 128
RTV+K Y C DK C VDKR+RNRCQ+CR+QKCL +GM +E V+ + R R +
Sbjct: 109 RTVRKDLSYACREDKQCLVDKRQRNRCQYCRYQKCLSMGMKREAVQEE-----RQRTKER 163
Query: 129 PKSPQESPPS----PPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 184
++ ES S PV I R + P+ E E + + + +A +
Sbjct: 164 DQNEVESTSSFHTDMPVERILEAERRVDFKVEPMVEYENANTLFQATDKQLVQLVEWAKQ 223
Query: 185 IPGFSDLCKEDQELLFQSASLELF 208
IP F+ L EDQ LL ++ EL
Sbjct: 224 IPHFTSLPIEDQVLLLRAGWNELL 247
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P+ E E + + + +A +IP F+ L EDQ LL ++ EL + ++R+
Sbjct: 196 PMVEYENANTLFQATDKQLVQLVEWAKQIPHFTSLPIEDQVLLLRAGWNELLIAGFSHRS 255
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLN-AILEFCQSLHLMEIDISAFACLCALTL 334
K++ +GV + + ++ D + A+ E + M++D + CL + L
Sbjct: 256 IGVKEKIVLGSGVTVCRNTAHQAGVDTIFDRALTELVSKMREMKMDKAELGCLRTIIL 313
>gi|380018886|ref|XP_003693350.1| PREDICTED: ecdysone receptor-like isoform 2 [Apis florea]
Length = 606
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 147/328 (44%), Gaps = 34/328 (10%)
Query: 28 GCDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKA 84
GCD + P+P Q LC VCGD A+ HY TCEGCKGFF+R++ K + Y C
Sbjct: 209 GCDARKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNN 268
Query: 85 CPVDKRRRNRCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGRLPSKPKSPQESP 136
C +D R +CQ CR +KCL VGM E V+ K ++ + + SP
Sbjct: 269 CEIDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEKKAQKEKDKPNSTTMNGSP 328
Query: 137 PSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 196
S S + EP AE E SL T+ I + E +
Sbjct: 329 GSGIRSDQMGVKIEP-------AEAE------SLSTSGSSGILTPVSPYGYVKPISPEQE 375
Query: 197 ELLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 246
EL+ + + Y +P+ P E K + + +V +I F+ ++
Sbjct: 376 ELIHRLVYFQNEYEQPSEEDLKRITNQPSEGEDISDYKFRHITEITILTVQLIVEFSKRL 435
Query: 247 PGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWL 306
PGF +L +EDQ L ++ S E+ +LR+A + + +IF N K + + +
Sbjct: 436 PGFDELMREDQIALLKACSSEVMMLRMARKYDVQTDSIIFANNQPYTKDSYTVAGMGETI 495
Query: 307 NAILEFCQSLHLMEIDISAFACLCALTL 334
+L FC+ ++ M+++ + +A L A+ +
Sbjct: 496 EDLLHFCRQMYAMKVNNAEYALLTAIVI 523
>gi|8895462|gb|AAF80975.1| retinoic acid receptor gamma 2 [Ambystoma mexicanum]
Length = 441
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 132/293 (45%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 79 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQK 138
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++T Y P +E IA+
Sbjct: 139 CFEVGMSKEAVRNDR---------------NKKKKEIKEEVVTDSYEMPPEMEALIAKVS 183
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + SA + L+ + +
Sbjct: 184 KAHQ-------------------ETFPSLCQLGKYTTNSSADHRV------QLDLGLWD- 217
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 218 ----KFSELATKCIIKIVEFAKRLPGFATLTIADQITLLKAACLDILMLRICTRYTPEQD 273
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F + L +E+D + L A+ LI
Sbjct: 274 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLEMDDTETGLLSAICLI 326
>gi|348535610|ref|XP_003455292.1| PREDICTED: retinoic acid receptor beta-like [Oreochromis niloticus]
Length = 463
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C VGM KE VR D + K +ESP +P +AE
Sbjct: 141 CFAVGMSKESVRND-----------RNKKKKESP------------------KPDLAES- 170
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
+ + L T ++ IR + F LC+ + SA + L+ + +
Sbjct: 171 --YELTTELETIIEKIRRAHQET--FPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R +
Sbjct: 220 ----KFSELATKCIIKIVEFAKRVPGFTGLTIADQITLLKAACLDILILRICTRYTPDQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPIEMDDTETGLLSAICLI 328
>gi|348565839|ref|XP_003468710.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Cavia porcellus]
Length = 451
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 144/324 (44%), Gaps = 64/324 (19%)
Query: 12 PKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
P L +S S+SPG +CA+CGD ++ +HYGV +CEGCKGFFKRT+
Sbjct: 104 PGLPGIGNMSYPSTSPGALVK--------HICAICGDRSSGKHYGVYSCEGCKGFFKRTI 155
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ + + R R S+ K
Sbjct: 156 RKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRE-RAESEAKG 214
Query: 132 PQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDL 191
PV I LE +A K + + V++ D + +++
Sbjct: 215 ASSGHEDMPVERI---------LEAELAVEPKTESY-----GDVNMENSTNDPV---TNI 257
Query: 192 CKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 251
C + LF + +A +IP FSD
Sbjct: 258 CHAADKQLF-------------------------------------TLVEWAKRIPHFSD 280
Query: 252 LCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAIL 310
L EDQ +L ++ EL + ++R+ + ++ G+ + + + G + +
Sbjct: 281 LTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLT 340
Query: 311 EFCQSLHLMEIDISAFACLCALTL 334
E + M++D S CL A+ L
Sbjct: 341 ELVSKMKDMQMDKSELGCLRAIVL 364
>gi|290650190|ref|NP_001037331.2| ecdysone receptor isoform B2 [Bombyx mori]
gi|793744|gb|AAA87340.1| 20-hydroxy-ecdysone receptor [Bombyx mori]
Length = 603
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 153/338 (45%), Gaps = 35/338 (10%)
Query: 20 LSSASSSPGC----DTSR----PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC D R P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 176 LSPASSINGCSADADARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 235
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
K + Y+C AC +D R +CQ CR +KCL VGM E V + PSK K
Sbjct: 236 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVIQE---------PSKNKD 286
Query: 132 PQESPPSP----PVSLITALYREPNPL--EPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
Q PVS T P + +PP E +I + + + ++ I
Sbjct: 287 RQRQKKDKGILLPVSTTTVEDHMPPIMQCDPPPPEAARIHEVVPRYLSEKLMEQNRQKNI 346
Query: 186 PGFSDLCKEDQELLFQSASLELFYREPNP-----LEPPIAEPEK----IQQFYSLLTTSV 236
P S + L+ + + Y +P+ + E E+ +Q + +V
Sbjct: 347 PPLS---ANQKSLIARLVWYQEGYEQPSDEDLKRVTQSDEEDEESDLPFRQITEMTILTV 403
Query: 237 DVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ 296
+I FA +PGFS + + DQ L +++S E+ +LR+A R A ++F N +
Sbjct: 404 QLIVEFAKGLPGFSKISQSDQITLLKASSSEVMMLRVARRYDAASDSVLFANNKAYTRDN 463
Query: 297 CQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ + +L FC+ + M +D FA L A+ +
Sbjct: 464 YRQGGMAYVIEDLLHFCRCMFAMGMDNVHFALLTAIVI 501
>gi|213513284|ref|NP_001135406.1| estrogen-related receptor [Tribolium castaneum]
gi|270011014|gb|EFA07462.1| estrogen-related receptor [Tribolium castaneum]
Length = 415
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 128/265 (48%), Gaps = 57/265 (21%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
SP +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C ++KRRR CQ
Sbjct: 94 SPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASGECEINKRRRKACQA 153
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRF+KCL+ GM+KE VR D ++G R + P SP + V +++A + P
Sbjct: 154 CRFRKCLRSGMLKEGVRLDRVRGGRQKYRRNPDSPYQ------VQVVSA--------QRP 199
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
+ + E I+ +L +C EP+ LE
Sbjct: 200 MLQLEDIKMLDALA-------------------IC------------------EPDCLEI 222
Query: 218 PIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
A + S+L+ D I +A +IPGF+DL DQ L QS E+ L L
Sbjct: 223 NKALENSKHRTLSILSDLYDRELVGIIGWAKQIPGFTDLSLNDQMRLLQSTWAEILTLTL 282
Query: 274 AYRT--RAEDTKLIFCNGVVLEKQQ 296
AYR+ + +L F N L+++Q
Sbjct: 283 AYRSVPLIQLARLKFANDFTLDEKQ 307
>gi|64131|emb|CAA49565.1| retinoic acid receptor delta 1b [Notophthalmus viridescens]
gi|64135|emb|CAA35603.1| retinoic acid receptor delta [Notophthalmus viridescens]
gi|226521|prf||1516344B retinoic acid receptor delta
Length = 454
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 130/299 (43%), Gaps = 57/299 (19%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 92 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQK 151
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++T Y P +E I +
Sbjct: 152 CFEVGMSKEAVRNDR---------------NKKKKEIKEEVVTDSYEMPPEMEALIQKVS 196
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS------LELFYREPNPLE 216
K Q F LC+ + SA L L+++
Sbjct: 197 KAHQ-------------------ETFPSLCQLGKYTTNSSADHRVQLDLGLWHK------ 231
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R
Sbjct: 232 -----------FSELATKCIIKIVEFAKRLPGFATLTIADQITLLKAACLDILMLRICTR 280
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
E + F +G+ L + Q + + + F + L +E+D + L A+ LI
Sbjct: 281 YTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLEMDDTETGLLSAICLI 339
>gi|281427368|ref|NP_001163992.1| steroid hormone receptor ERR1 [Sus scrofa]
gi|229609707|gb|ACQ83469.1| ERRa [Sus scrofa]
Length = 422
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 133/296 (44%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 75 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 134
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+K VR D ++G R + +P+ P P + A+ P P
Sbjct: 135 RFTKCLRVGMLKGGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 194
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H P E Y P+P P
Sbjct: 195 A-----------------LVSHLLVVEP-------------------EKLYAMPDPAGPD 218
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 219 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 277
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 278 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 333
>gi|390476422|ref|XP_002759706.2| PREDICTED: retinoic acid receptor beta isoform 1 [Callithrix
jacchus]
Length = 448
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 133/294 (45%), Gaps = 47/294 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE-P 161
C +VGM KE VR D K + K S QE RE + + +
Sbjct: 141 CFEVGMSKESVRNDRNKKK------KETSKQEC-------------RESYEMTAELDDLT 181
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAE 221
EKI++ + F LC+ + SA +R P
Sbjct: 182 EKIRKAHQ----------------ETFPSLCQLGKYTTNSSAE----HRVPTG------- 214
Query: 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
P +F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 215 PGPRDKFSELATKCIIKIVEFAKRLPGFTSLTIADQITLMKAACLDILILRICTRYTPEQ 274
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 275 DTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|380018884|ref|XP_003693349.1| PREDICTED: ecdysone receptor-like isoform 1 [Apis florea]
Length = 545
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 147/329 (44%), Gaps = 34/329 (10%)
Query: 28 GCDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKA 84
GCD + P+P Q LC VCGD A+ HY TCEGCKGFF+R++ K + Y C
Sbjct: 148 GCDARKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNN 207
Query: 85 CPVDKRRRNRCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGRLPSKPKSPQESP 136
C +D R +CQ CR +KCL VGM E V+ K ++ + + SP
Sbjct: 208 CEIDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEKKAQKEKDKPNSTTMNGSP 267
Query: 137 PSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 196
S S + EP AE E SL T+ I + E +
Sbjct: 268 GSGIRSDQMGVKIEP-------AEAE------SLSTSGSSGILTPVSPYGYVKPISPEQE 314
Query: 197 ELLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 246
EL+ + + Y +P+ P E K + + +V +I F+ ++
Sbjct: 315 ELIHRLVYFQNEYEQPSEEDLKRITNQPSEGEDISDYKFRHITEITILTVQLIVEFSKRL 374
Query: 247 PGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWL 306
PGF +L +EDQ L ++ S E+ +LR+A + + +IF N K + + +
Sbjct: 375 PGFDELMREDQIALLKACSSEVMMLRMARKYDVQTDSIIFANNQPYTKDSYTVAGMGETI 434
Query: 307 NAILEFCQSLHLMEIDISAFACLCALTLI 335
+L FC+ ++ M+++ + +A L A+ +
Sbjct: 435 EDLLHFCRQMYAMKVNNAEYALLTAIVIF 463
>gi|1173170|sp|P18516.2|RARG_NOTVI RecName: Full=Retinoic acid receptor gamma; Short=RAR-gamma;
AltName: Full=Nuclear receptor subfamily 1 group B
member 3; AltName: Full=Retinoic acid receptor delta;
Short=RAR-delta
gi|64130|emb|CAA49564.1| retinoic acid receptor delta 1a [Notophthalmus viridescens]
Length = 505
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 130/299 (43%), Gaps = 57/299 (19%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 143 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQK 202
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++T Y P +E I +
Sbjct: 203 CFEVGMSKEAVRNDR---------------NKKKKEIKEEVVTDSYEMPPEMEALIQKVS 247
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS------LELFYREPNPLE 216
K Q F LC+ + SA L L+++
Sbjct: 248 KAHQ-------------------ETFPSLCQLGKYTTNSSADHRVQLDLGLWHK------ 282
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R
Sbjct: 283 -----------FSELATKCIIKIVEFAKRLPGFATLTIADQITLLKAACLDILMLRICTR 331
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
E + F +G+ L + Q + + + F + L +E+D + L A+ LI
Sbjct: 332 YTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAEQLLPLEMDDTETGLLSAICLI 390
>gi|312190945|gb|ADQ43371.1| ecdysone receptor isoform [Nezara viridula]
Length = 419
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 159/348 (45%), Gaps = 36/348 (10%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPS----QLCAVCGDIAACQHYG 56
++LGR S + L + S+ CD S+ S + +LC VCGD A+ HY
Sbjct: 13 SKLGREDLSPANSL-------NGFSADSCDGSKKKKGSAARQQEELCLVCGDRASGYHYN 65
Query: 57 VRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTD 116
TCEGCKGFF+R++ K + Y C C +D R +CQ CR +KCL VGM E V
Sbjct: 66 ALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLSVGMRPECV--- 122
Query: 117 SLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVD 176
+ + + K K Q+ PVS +P + EP ++ T
Sbjct: 123 -VPEYQCAVKRKEKKAQKD-KDKPVSTTNG-----SPESIKVEEPHRVVYKTEGETLGRP 175
Query: 177 VIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNP-----LEPPIAEPEKIQQFYSL 231
V I G + E +EL+ + + Y P+ + P + E+ Q +
Sbjct: 176 V------PINGVKPVSPEQEELIHRLVYFQNEYEHPSEEDLRRINTPNEDEEQSDQRFRH 229
Query: 232 LTT----SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFC 287
LT +V +I FA ++PGF L +EDQ L ++ S E+ +LR+A + A ++F
Sbjct: 230 LTEITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMLRMARKYDATTDSILFA 289
Query: 288 NGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
N ++ + D + +L FC+ + M++D + +A L A+ +
Sbjct: 290 NNQPYNRESYSLAGMGDVIEDLLRFCRHMFNMKVDNAEYALLTAIVIF 337
>gi|226316413|gb|ACO44670.1| retinoid X receptor isoform 3 [Crangon crangon]
Length = 399
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 131/294 (44%), Gaps = 60/294 (20%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C D+AC +DKR+RNRCQ+CR+
Sbjct: 75 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRACTIDKRQRNRCQYCRY 134
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + + + P+S P IT+++ +EP +
Sbjct: 135 QKCLGMGMKREAVQEERQRTKGDKGDGDPESSCGGISDMP---ITSIHEAEIIVEPTDEQ 191
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
P D+ +++C+ L Q
Sbjct: 192 P--------------------VDQGDAVTNICQAADRHLVQ------------------- 212
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ +A IP F+DL +DQ +L ++ EL + ++R+
Sbjct: 213 ------------------LVEWAKHIPHFTDLPVQDQVVLLKAGWNELLIAAFSHRSIGV 254
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ G+V Q G + + E + M++D + CL ++ L
Sbjct: 255 KDGIVLATGLVHRSSAHQAGVGTIFDRVLSELVAKMKEMKMDKTELGCLRSIVL 308
>gi|234371|gb|AAB19628.1| retinoic acid receptor-beta [Gallus gallus]
Length = 425
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 58 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCVINKVTRNRCQYCRLQK 117
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + P+K S + + + +T E
Sbjct: 118 CFEVGMSKESVRND--RNKKKKEPTKQDSTENYEMTAELDDLT----------------E 159
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 160 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 196
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 197 ----KFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQD 252
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 253 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 305
>gi|40362586|gb|AAR84611.1| ecdysone receptor [Plodia interpunctella]
Length = 541
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 154/337 (45%), Gaps = 30/337 (8%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 112 LSPASSVNGCSTDGDARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 171
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
K + Y+ AC +D R +CQ CR +KCL VGM E V ++ + + K K
Sbjct: 172 TKNAVYIYKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPET----QCAIKRKEKK 227
Query: 132 PQESPPSPPVSLITALYREPNPL--EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 189
Q PVS T P + +PP E +I + + + ++ IP +
Sbjct: 228 AQREKDKLPVSTTTVDDHMPPIMQCDPPPPEAARIHEVVPRFLSDKLMEQNRLKNIPPLT 287
Query: 190 DLCKEDQELL----------FQSASLELFYREPNPLEPPIAEPEKI--QQFYSLLTTSVD 237
+Q+ L ++ S E R +P + + + +Q + +V
Sbjct: 288 ----ANQQFLIAGLVWYQDGYEQPSEEDLKRVTQTWQPTDEDDDDMPFRQITEMTILTVQ 343
Query: 238 VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC 297
+I FA +PGFS + + DQ L ++ S E+ +LR+A R A ++F N +
Sbjct: 344 LIVEFAKGLPGFSKISQPDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNY 403
Query: 298 QRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 404 RKAGMAYVIEDLLHFCRCMYSMTMDNVHYALLTAIVI 440
>gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus musculus]
Length = 463
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 136/295 (46%), Gaps = 56/295 (18%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + S PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECASSSHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
K + + ++V D + +++C + LF
Sbjct: 247 EPKTESY-----GDMNVENSTNDPV---TNICHAADKQLF-------------------- 278
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ +A +IP FSDL EDQ +L ++ EL + ++R+ +
Sbjct: 279 -----------------TLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV 321
Query: 281 DTKLIFCNGVVLEKQQCQ-RSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ G+ + + R G + + E + M++D S CL A+ L
Sbjct: 322 QDGILLATGLHVHRSSAHSRGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 376
>gi|124015060|gb|ABM88718.1| estrogen receptor alpha [Sus scrofa]
Length = 595
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 141/301 (46%), Gaps = 33/301 (10%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR +Q + Y+C A C +DK RR CQ CR
Sbjct: 182 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRGIQGHNDYMCPATNQCTIDKNRRKSCQACR 241
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM K +R D GR + + + + P + + P+PL
Sbjct: 242 LRKCYEVGMTKGGIRKDRRGGRMLKHKRQRDDGEGRNEAVPPGDMRSANLWPSPL----- 296
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE----LFYREPNPL 215
+I+H P S DQ + SA LE + Y E +P
Sbjct: 297 -----------------LIKHTKKNSPVLS--LTADQMI---SALLEAEPPIIYSEYDPT 334
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
P ++E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +
Sbjct: 335 RP-LSEASMMGLLTNLADRELVHMINWAKRVPGFLDLSLHDQVHLLECAWLEILMIGLVW 393
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ KL+F ++L++ Q + G + + +L +M + F CL ++ L
Sbjct: 394 RSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIIL 453
Query: 335 I 335
+
Sbjct: 454 L 454
>gi|158300393|ref|XP_320323.4| AGAP012211-PA [Anopheles gambiae str. PEST]
gi|157013138|gb|EAA00117.5| AGAP012211-PA [Anopheles gambiae str. PEST]
Length = 477
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 147/321 (45%), Gaps = 30/321 (9%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
PTP +LC VCGD A+ HY TCEGCKGFF+R+V K + Y C AC +D R
Sbjct: 79 PTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKNAVYCCKFGHACEMDMYMRR 138
Query: 94 RCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNP 153
+CQ CR +KCL VGM E V ++ + + K + PP+P + ++
Sbjct: 139 KCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDKVPPNPSTTTVSTTNSSSYK 198
Query: 154 LE----------PPIAE----PEKI-----QQFYSLLTTS-VDVIRHFADKIPGFSDLCK 193
E PP A PEK+ Q+ LLT + + VI G+ +
Sbjct: 199 SELLPVLMKCESPPTAAIPLLPEKLLNENRQRNIPLLTANQMAVIYKLIWYQDGYEQPSE 258
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 253
ED + + PN E P + + +V +I FA +P F+ +
Sbjct: 259 EDLK--------RIMINSPNEEEDP--HEIHFRHITEITILTVQLIVEFAKGLPAFTKIP 308
Query: 254 KEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFC 313
+EDQ L ++ S E+ +LR+A R AE ++F N + + + D + +L FC
Sbjct: 309 QEDQITLLKACSSEVMMLRMARRYDAETDSILFANNRSYTRDSYKMAGMADTIEDLLHFC 368
Query: 314 QSLHLMEIDISAFACLCALTL 334
+ ++ + +D +A L A+ +
Sbjct: 369 RQMYTLTVDNVEYALLTAIVI 389
>gi|148237103|ref|NP_001089591.1| uncharacterized protein LOC734648 [Xenopus laevis]
gi|68533768|gb|AAH99024.1| MGC115510 protein [Xenopus laevis]
Length = 471
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 138/298 (46%), Gaps = 60/298 (20%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C K C +DKR+RNRCQ+CR+
Sbjct: 145 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLFYTCRDSKDCLIDKRQRNRCQYCRY 204
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + R S+ KS E+ + S A+ R LE +A
Sbjct: 205 QKCLAMGMKREAVQEE-------RHRSREKSDTEAESTSITSEEMAVER---ILEAELAV 254
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
KI+ F G + L PN P+
Sbjct: 255 EPKIEAF-------------------GDAGL--------------------PNSTNDPVT 275
Query: 221 E--PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++R+
Sbjct: 276 NICHAADKQLFTLV--------EWAKRIPHFSDLLLEDQVILLRAGWNELLIASFSHRSV 327
Query: 279 AEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ ++ G+ + + + G + + E + ME+D S CL A+ L
Sbjct: 328 SVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELVSKMKDMEMDKSELGCLRAIVLF 385
>gi|71040960|gb|AAZ20371.1| RXRd nuclear hormone receptor [Gecarcinus lateralis]
Length = 432
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 147/313 (46%), Gaps = 62/313 (19%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C +++C +DKR+RNRCQ+CR+
Sbjct: 70 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRY 129
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E RRG+ K ++ S I+ + PIA
Sbjct: 130 QKCLTMGMKREAA-----GHRRGQWTKGDKGDGDTESS--CGAISDM---------PIAS 173
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN------- 213
+ + SVD I D++ L Q L++ P+
Sbjct: 174 IREAE-------LSVDPI----------------DEQPLDQGVRLQVPLAPPDSEKCSFT 210
Query: 214 -PLEP----PIAEPEKIQQFYSLLTTSVDVIRH------FADKIPGFSDLCKEDQELLFQ 262
P P P A P +Q S + + D RH +A IP F+DL EDQ +L +
Sbjct: 211 LPFHPASEVPCANP--LQDVVSNICQAAD--RHLVQLVEWAKHIPHFTDLPIEDQVVLLK 266
Query: 263 SASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC-QRSFGDDWLNAILEFCQSLHLMEI 321
+ EL + ++R+ + ++ G+V+ + Q G + + E + M+I
Sbjct: 267 AGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQAGVGAIFDRVLSELVAKMKEMKI 326
Query: 322 DISAFACLCALTL 334
D + CL ++ L
Sbjct: 327 DKTELGCLRSIVL 339
>gi|402892974|ref|XP_003909681.1| PREDICTED: steroid hormone receptor ERR1 [Papio anubis]
Length = 506
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 136/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 159 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 218
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G GR Q+ P V + P
Sbjct: 219 RFTKCLRVGMLKEGVRLDRVRG--GR--------QKYKRRPEVDPLPFPGPFPAGPLAVA 268
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
P K +L++ H L E ++L Y P+P P
Sbjct: 269 GGPRKTAPVNALVS-------HL---------LVVEPEKL----------YAMPDPAGPD 302
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 303 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 361
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 362 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 417
>gi|351696221|gb|EHA99139.1| Retinoic acid receptor RXR-gamma [Heterocephalus glaber]
Length = 463
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 148/339 (43%), Gaps = 78/339 (23%)
Query: 7 SSSES----PKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEG 62
SSSE P L +S S+SPG +CA+CGD ++ +HYGV +CEG
Sbjct: 107 SSSEDIKPLPGLPGLGNMSYPSTSPGALVK--------HICAICGDRSSGKHYGVYSCEG 158
Query: 63 CKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRR 122
CKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ + + R
Sbjct: 159 CKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRE 218
Query: 123 GRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTS-----VDV 177
R S+ K PV I LE +A K + + + + V
Sbjct: 219 -RAESEAKGASSGHEDMPVERI---------LEAELAVEPKTESYGDMNMENSTNDPVTN 268
Query: 178 IRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVD 237
I H ADK Q ++L+
Sbjct: 269 ICHAADK------------------------------------------QLFTLV----- 281
Query: 238 VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC 297
+A +IP FSDL EDQ +L ++ EL + ++R+ + ++ G+ + +
Sbjct: 282 ---EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSA 338
Query: 298 QRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ G + + E + M++D S CL A+ L
Sbjct: 339 HSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 377
>gi|242117914|ref|NP_001155988.1| estrogen-related receptor [Apis mellifera]
gi|153793268|gb|ABS50436.1| estrogen-related receptor [Apis mellifera]
Length = 434
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 137/298 (45%), Gaps = 56/298 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A+ C ++KRRR CQ C
Sbjct: 105 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPANGECEINKRRRKACQAC 164
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRG--RLPSKPKSPQESPPSPPVSLITALYREPNPLEP 156
RFQKCL+ GM+KE VR D ++G R R + P +P + P ++ AL
Sbjct: 165 RFQKCLRQGMLKEGVRLDRVRGGRQKYRRSTDPYTPVKPAPLEDNKMLEAL--------- 215
Query: 157 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
EP+ +Q V I H D DQ +L Q + +L+ RE
Sbjct: 216 AACEPDMLQ---------VSNISHTLDT----------DQRVLGQLS--DLYDRE----- 249
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
V +I +A +IPGFS L DQ L QS E+ LA+R
Sbjct: 250 ------------------LVGII-GWAKQIPGFSSLALNDQMRLLQSTWAEILTFSLAWR 290
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +L F L+++ + + ++ + L + + + L AL L
Sbjct: 291 SMPNNGRLRFAQDFTLDERLARECHCTELYTHCIQIVERLQRLGLTREEYYVLKALIL 348
>gi|218156206|dbj|BAH03335.1| retinoic acid receptor 3 [Lethenteron camtschaticum]
Length = 519
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 133/293 (45%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR Q+
Sbjct: 120 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKKCIINKITRNRCQYCRLQR 179
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL+VGM KE VR D K ++ + +P+ + PP P + +
Sbjct: 180 CLEVGMSKESVRNDRSKKKKEVV--RPELLEIPPPCPEIEDL------------------ 219
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
+D +R + F LC+ L + + +
Sbjct: 220 ------------IDRVRRAHQET--FPSLCQ-----------LGKYTTSNGSGQRATLDA 254
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + FA +IPGFS L +DQ L ++A L++ +LR+ R E
Sbjct: 255 NLWDKFSELSTKCIVKTVEFAKRIPGFSTLGIDDQITLLKAACLDILILRICTRYTPEHD 314
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L ++ LI
Sbjct: 315 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAAQLLPLEMDDTEAGLLSSICLI 367
>gi|345496188|ref|XP_003427670.1| PREDICTED: steroid hormone receptor ERR2 isoform 2 [Nasonia
vitripennis]
Length = 450
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 125/257 (48%), Gaps = 40/257 (15%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A+ C ++KRRR CQ C
Sbjct: 109 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPANGECEINKRRRKACQAC 168
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RFQKCL+ GM+KE VR D ++G R K + + P P IT E N
Sbjct: 169 RFQKCLRQGMLKEGVRLDRVRGGR------QKYRRSTDPYVPGKTITL---EANVGSAGY 219
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
AE + +L++ D++ ++ S DQ +L Q + +L+ RE
Sbjct: 220 AEAINNKMVEALISCEPDML-----QVSTLSHTLDTDQRVLGQLS--DLYDREL------ 266
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
V +I +A +IPGFS L DQ L QS E+ LA+R+
Sbjct: 267 -----------------VGII-GWAKQIPGFSSLPLNDQMRLLQSTWAEILTFSLAWRSI 308
Query: 279 AEDTKLIFCNGVVLEKQ 295
KL F L+++
Sbjct: 309 PNSGKLRFAQDFTLDER 325
>gi|293628870|dbj|BAJ05029.1| estrogen receptor alpha [Ambystoma mexicanum]
Length = 586
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 155/327 (47%), Gaps = 39/327 (11%)
Query: 15 RHSAP--LSSAS--SSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
RH+A +S+AS SP ++++ T + CAVC D A+ HYGV +CEGCK FFKR+
Sbjct: 153 RHAARERISTASEKGSPSMESTKET-----RYCAVCSDYASGYHYGVWSCEGCKAFFKRS 207
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
+Q + Y+C A C +DK RR CQ CR +KC +VGM+K +R D RRG K K
Sbjct: 208 IQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKD----RRGGRLMKHK 263
Query: 131 SPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 190
+E P P ++ R P P + K L T+ ++ + P
Sbjct: 264 RQKEEPNQKPEEAVSVC-RSPTLWVSPSVKNAKKNPV--LAMTAEQLLTALIEAEP---- 316
Query: 191 LCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 250
+ Y E +P ++E + +L + + ++A ++PGF
Sbjct: 317 ---------------PIVYSEHDP-NKQLSEASMMTLLTNLADKELVHMINWAKRVPGFV 360
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ--CQRSFGDDWLNA 308
DL DQ L + A LE+ ++ L +R+ KL F +++++ Q C F + +
Sbjct: 361 DLTLHDQVHLLECAWLEILMVGLVWRSVEHPGKLSFAPNLLMDRNQGRCVEGF-VEIFDM 419
Query: 309 ILEFCQSLHLMEIDISAFACLCALTLI 335
++ +M+++ F CL ++ L+
Sbjct: 420 LVATAARFRMMKLEGEEFMCLKSIILL 446
>gi|6015050|sp|O18473.1|ECR_HELVI RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone
receptor; Short=20E receptor; AltName: Full=EcRH;
AltName: Full=Ecdysteroid receptor; AltName: Full=HvEcR;
AltName: Full=Nuclear receptor subfamily 1 group H
member 1
gi|2440080|emb|CAA70212.1| ecdysteroid receptor [Heliothis virescens]
Length = 576
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 149/344 (43%), Gaps = 41/344 (11%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 132 LSPASSVNGCSTDGEARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 191
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV----------RTDSLKGR 121
K + Y+C AC +D R +CQ CR +KCL VGM E V + +
Sbjct: 192 TKNAVYICKFGHACEMDIYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRKEKKAQRE 251
Query: 122 RGRLP--------SKPKSPQESPPSPPVSLITALYRE---PNPLEPPIAEPEKIQQFYSL 170
+ +LP P Q PP P + I + P L + E +++ L
Sbjct: 252 KDKLPVSTTTVDDHMPPIMQCDPPPPEAARILECVQHEVVPRFLNEKLMEQNRLKNVPPL 311
Query: 171 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYS 230
+I G+ +ED + + QS + P +Q
Sbjct: 312 TANQKSLIARLVWYQEGYEQPSEEDLKRVTQSDEDDEDSDMP------------FRQITE 359
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ +V +I FA +PGF+ + + DQ L ++ S E+ +LR+A R A ++F N
Sbjct: 360 MTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQ 419
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 420 AYTRDNYRKAGMAYVIEDLLHFCRCMYSMMMDNVHYALLTAIVI 463
>gi|380025663|ref|XP_003696588.1| PREDICTED: steroid hormone receptor ERR2-like [Apis florea]
Length = 434
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 137/298 (45%), Gaps = 56/298 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A+ C ++KRRR CQ C
Sbjct: 105 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPANGECEINKRRRKACQAC 164
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRG--RLPSKPKSPQESPPSPPVSLITALYREPNPLEP 156
RFQKCL+ GM+KE VR D ++G R R + P +P + P ++ AL
Sbjct: 165 RFQKCLRQGMLKEGVRLDRVRGGRQKYRRSTDPYTPVKPAPLEDNKMLEAL--------- 215
Query: 157 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
EP+ +Q V I H D DQ +L Q + +L+ RE
Sbjct: 216 AACEPDMLQ---------VSNISHTLDT----------DQRVLGQLS--DLYDRE----- 249
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
V +I +A +IPGFS L DQ L QS E+ LA+R
Sbjct: 250 ------------------LVGII-GWAKQIPGFSSLALNDQMRLLQSTWAEILTFSLAWR 290
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +L F L+++ + + ++ + L + + + L AL L
Sbjct: 291 SMPNNGRLRFAQDFTLDERLARECHCTELYTHCIQIVERLQRLGLTREEYYVLKALIL 348
>gi|226316409|gb|ACO44668.1| retinoid X receptor isoform 1 [Crangon crangon]
Length = 405
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 132/297 (44%), Gaps = 60/297 (20%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C D+AC +DKR+RNRCQ+CR+
Sbjct: 75 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRACTIDKRQRNRCQYCRY 134
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS--PQESPPSPPVSLITALYREPNPLEPPI 158
QKCL +GM +E V+ ++ R R P+ S IT+++ +EP
Sbjct: 135 QKCLGMGMKREAVQVGGIEEERQRTKGDKGDGDPESSCGGISDMPITSIHEAEIIVEPTD 194
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+P D+ +++C+ L Q
Sbjct: 195 EQP--------------------VDQGDAVTNICQAADRHLVQ----------------- 217
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ +A IP F+DL +DQ +L ++ EL + ++R+
Sbjct: 218 --------------------LVEWAKHIPHFTDLPVQDQVVLLKAGWNELLIAAFSHRSI 257
Query: 279 AEDTKLIFCNGVVLEKQQC-QRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ G+V+ + Q G + + E + M++D + CL ++ L
Sbjct: 258 GVKDGIVLATGLVVHRSSAHQAGVGTIFDRVLSELVAKMKEMKMDKTELGCLRSIVL 314
>gi|270014266|gb|EFA10714.1| ecdysone receptor isoform A [Tribolium castaneum]
Length = 549
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 148/329 (44%), Gaps = 44/329 (13%)
Query: 22 SASSSPGCDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV 78
+ S+ CD+ + P+P Q LC VCGD A+ HY TCEGCKGFF+R++ K + Y
Sbjct: 164 NGYSADSCDSKKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQ 223
Query: 79 CLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTD---SLKGRRGRLPSKPKSPQES 135
C C +D R +CQ CR +KCL VGM E V + ++K + + + P +
Sbjct: 224 CKYGNNCEIDMYMRRKCQECRLKKCLSVGMRPECVVPEVQCAVKRKEKKAQKEKDKPNST 283
Query: 136 PPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 195
P + +EP +++ EK G + E
Sbjct: 284 TNGSPDVI---------KVEPELSDSEKTL-------------------CNGSKGISPEQ 315
Query: 196 QELLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 245
+EL+ + + Y P+ P++ + + + +V +I FA +
Sbjct: 316 EELIHRLVYFQNEYEHPSEEDVKRIINQPMDGEDQCDVRFRHITEITILTVQLIVEFAKR 375
Query: 246 IPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDW 305
+PGF L +EDQ L ++ S E+ + R+A R + ++F N + + +
Sbjct: 376 LPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQTDSILFVNNQPYSRDSYNLAGMGET 435
Query: 306 LNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +L FC++++ M++D + +A L A+ +
Sbjct: 436 IEDLLHFCRTMYSMKVDNAEYALLTAIVI 464
>gi|334321961|ref|XP_001370409.2| PREDICTED: retinoic acid receptor RXR-gamma-like [Monodelphis
domestica]
Length = 473
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 137/313 (43%), Gaps = 60/313 (19%)
Query: 27 PGCDTSRPTPPSPSQL----CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAD 82
PG T SPS L CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +
Sbjct: 129 PGMGTMSYPSTSPSSLAKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDN 188
Query: 83 KACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVS 142
K C +DKR+RNRCQ+CR+QKCL +GM +E V+ + + R R ++ +S PV
Sbjct: 189 KDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRE-RAENEVESTSSGHEDMPVE 247
Query: 143 LITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 202
I E P E + V I H ADK
Sbjct: 248 RIL----EAELAVEPKTESYGDTNMENSTNDPVTNICHAADK------------------ 285
Query: 203 ASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ 262
Q ++L+ +A +IP FSDL EDQ +L +
Sbjct: 286 ------------------------QLFTLV--------EWAKRIPHFSDLTLEDQVILLR 313
Query: 263 SASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEI 321
+ EL + ++R+ + ++ G+ + + + G + + E + M++
Sbjct: 314 AGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQM 373
Query: 322 DISAFACLCALTL 334
D S CL A+ L
Sbjct: 374 DKSELGCLRAIVL 386
>gi|166795273|ref|NP_001107650.1| ecdysone receptor isoform A [Tribolium castaneum]
gi|121308146|emb|CAL25730.1| ecdysone receptor (isoform A) [Tribolium castaneum]
Length = 549
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 148/329 (44%), Gaps = 44/329 (13%)
Query: 22 SASSSPGCDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV 78
+ S+ CD+ + P+P Q LC VCGD A+ HY TCEGCKGFF+R++ K + Y
Sbjct: 164 NGYSADSCDSKKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQ 223
Query: 79 CLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTD---SLKGRRGRLPSKPKSPQES 135
C C +D R +CQ CR +KCL VGM E V + ++K + + + P +
Sbjct: 224 CKYGNNCEIDMYMRRKCQECRLKKCLSVGMRPECVVPEVQCAVKRKEKKAQKEKDKPNST 283
Query: 136 PPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 195
P + +EP +++ EK G + E
Sbjct: 284 TNGSPDVI---------KVEPELSDSEKTL-------------------CNGSKGISPEQ 315
Query: 196 QELLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 245
+EL+ + + Y P+ P++ + + + +V +I FA +
Sbjct: 316 EELIHRLVYFQNEYEHPSEEDVKRIINQPMDGEDQCDVRFRHITEITILTVQLIVEFAKR 375
Query: 246 IPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDW 305
+PGF L +EDQ L ++ S E+ + R+A R + ++F N + + +
Sbjct: 376 LPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQTDSILFVNNQPYSRDSYNLAGMGET 435
Query: 306 LNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +L FC++++ M++D + +A L A+ +
Sbjct: 436 IEDLLHFCRTMYSMKVDNAEYALLTAIVI 464
>gi|440910600|gb|ELR60380.1| Retinoic acid receptor RXR-gamma, partial [Bos grunniens mutus]
Length = 447
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 136/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 121 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 180
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 181 QKCLVMGMKREAVQEERQRSRE-RAESEAECANSGHEDMPVERI---------LEAELAV 230
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + T + V I H ADK
Sbjct: 231 EPKTESYGDMNTENSTNDPVTNICHAADK------------------------------- 259
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 260 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 300
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 301 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 360
>gi|78675507|dbj|BAE47509.1| ecdysone receptor A isoform [Pheidole megacephala]
Length = 633
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 149/327 (45%), Gaps = 34/327 (10%)
Query: 29 CDTSR---PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKAC 85
CD + PTP +LC VCGD A+ HY TCEGCKGFF+R++ + + Y C C
Sbjct: 237 CDAKKRKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITRNAVYQCKYGNGC 296
Query: 86 PVDKRRRNRCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGRLPSKPKSPQESPP 137
+D R +CQ CR +KCL VGM E V+ K ++ + + SP
Sbjct: 297 EIDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEKKAQKEKDKPNSTTMNGSPG 356
Query: 138 SPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 197
S + + +EP AE + +LT I + P + E +E
Sbjct: 357 SAGMGEQMGV-----KIEPAEAESLSMSGSSGILTP----ISPYTCVKP----ISPEQEE 403
Query: 198 LLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP 247
L+ + S + + +P+ P+E + + +V +I F+ ++P
Sbjct: 404 LINRLVSFQCEFEQPSEEDLKRITNQPMEGEDPSDYSFRHITEITILTVQLIVEFSKRLP 463
Query: 248 GFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLN 307
GF++L +EDQ L ++ S E+ +LR+A + + +IF N + + D +
Sbjct: 464 GFNELLREDQITLLKACSSEVMMLRMARKYDVQTDSIIFANNQSYTRDSYNVAGMGDTIE 523
Query: 308 AILEFCQSLHLMEIDISAFACLCALTL 334
+L FC+ ++ M ++ + +A L A+ +
Sbjct: 524 DLLRFCRQMYAMRVNNAEYALLTAIVI 550
>gi|226316411|gb|ACO44669.1| retinoid X receptor isoform 2 [Crangon crangon]
Length = 400
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 133/295 (45%), Gaps = 61/295 (20%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C D+AC +DKR+RNRCQ+CR+
Sbjct: 75 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRACTIDKRQRNRCQYCRY 134
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + + + P+S P IT+++ +EP +
Sbjct: 135 QKCLGMGMKREAVQEERQRTKGDKGDGDPESSCGGISDMP---ITSIHEAEIIVEPTDEQ 191
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
P D+ +++C+ L Q
Sbjct: 192 P--------------------VDQGDAVTNICQAADRHLVQ------------------- 212
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ +A IP F+DL +DQ +L ++ EL + ++R+
Sbjct: 213 ------------------LVEWAKHIPHFTDLPVQDQVVLLKAGWNELLIAAFSHRSIGV 254
Query: 281 DTKLIFCNGVVLEKQQC-QRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ G+V+ + Q G + + E + M++D + CL ++ L
Sbjct: 255 KDGIVLATGLVVHRSSAHQAGVGTIFDRVLSELVAKMKEMKMDKTELGCLRSIVL 309
>gi|31234|emb|CAA27284.1| oestrogen receptor [Homo sapiens]
gi|182193|gb|AAA52399.1| estrogen receptor [Homo sapiens]
gi|216409734|dbj|BAH02304.1| estrogen receptor 1 [Homo sapiens]
gi|224957|prf||1204262A estrogen receptor
Length = 595
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 182 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 241
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D R GR+ + + V + R N P+
Sbjct: 242 LRKCYEVGMMKGGIRKDR---RGGRMLKHKRQRDDGEGRGEVGSAGDM-RAANLWPSPLM 297
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+ +L T+ ++ D P + Y E +P P
Sbjct: 298 IKRSKKNSLALSLTADQMVSALLDAEP-------------------PILYSEYDPTRP-F 337
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 338 SEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 397
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 398 HPVKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 454
>gi|383863647|ref|XP_003707291.1| PREDICTED: steroid hormone receptor ERR2-like [Megachile rotundata]
Length = 434
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 136/298 (45%), Gaps = 56/298 (18%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A+ C ++KRRR CQ C
Sbjct: 105 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPANGECEINKRRRKACQAC 164
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRG--RLPSKPKSPQESPPSPPVSLITALYREPNPLEP 156
RFQKCL+ GM+KE VR D ++G R R + P +P ++ P ++ AL
Sbjct: 165 RFQKCLRQGMLKEGVRLDRVRGGRQKYRRSTDPYTPVKTAPLEDNKMLEAL--------- 215
Query: 157 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
EP+ +Q + S DQ +L Q + +L+ RE
Sbjct: 216 AACEPDMLQ-------------------VSNLSHTLDTDQRVLGQLS--DLYDREL---- 250
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
V +I +A +IPGFS L DQ L QS E+ LA+R
Sbjct: 251 -------------------VGII-GWAKQIPGFSGLALNDQMRLLQSTWAEILTFSLAWR 290
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +L F L+++ + + ++ + L + + + L AL L
Sbjct: 291 SMPNNGRLRFAQDFTLDERLARECHCTELYTHCIQIVERLQRLGLTREEYYMLKALIL 348
>gi|427781701|gb|JAA56302.1| Putative estrogen-related receptor err estrogen-related receptor
err [Rhipicephalus pulchellus]
Length = 469
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 108/203 (53%), Gaps = 23/203 (11%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C ++KRRR CQ C
Sbjct: 88 PRRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGNIEYTCPASSDCEINKRRRKACQAC 147
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP--VSL-----ITALYR-E 150
RFQKCL++GM+KE VR D ++G R + P P VSL I+AL E
Sbjct: 148 RFQKCLKMGMLKEGVRLDRVRGGRQKYRRSTDGPYHVQALTPKKVSLEDNVIISALVHCE 207
Query: 151 PNPLEPPI---AEPEKIQQFYSLLTTSVDVIRH------FADKIPGFSDLCKEDQELLFQ 201
P PL + P + ++ S V R +A +IPGF+DL DQ L Q
Sbjct: 208 PEPLLAMTNGSSSPSLDSHYTTVSVLSELVDRELVATISWAKQIPGFTDLTLNDQMRLLQ 267
Query: 202 SA-----SLELFYREPNPLEPPI 219
+ SL L YR + L PP+
Sbjct: 268 TTWAEILSLALAYRSCH-LSPPV 289
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLEKQQCQR 299
+A +IPGF+DL DQ L Q+ E+ L LAYR+ + +L+F + ++++++Q
Sbjct: 247 WAKQIPGFTDLTLNDQMRLLQTTWAEILSLALAYRSCHLSPPVRLMFASDLIVDERQASE 306
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ + L + I F L AL L
Sbjct: 307 CRAEELFLHTAHLVKRLEALSISREEFLALKALLL 341
>gi|62821794|ref|NP_000116.2| estrogen receptor [Homo sapiens]
gi|170295800|ref|NP_001116212.1| estrogen receptor [Homo sapiens]
gi|170295802|ref|NP_001116213.1| estrogen receptor [Homo sapiens]
gi|170295804|ref|NP_001116214.1| estrogen receptor [Homo sapiens]
gi|544257|sp|P03372.2|ESR1_HUMAN RecName: Full=Estrogen receptor; Short=ER; AltName: Full=ER-alpha;
AltName: Full=Estradiol receptor; AltName: Full=Nuclear
receptor subfamily 3 group A member 1
gi|37499471|gb|AAQ91815.1| estrogen receptor 1 [Homo sapiens]
gi|60814879|gb|AAX36323.1| estrogen receptor 1 [synthetic construct]
gi|61357348|gb|AAX41375.1| estrogen receptor 1 [synthetic construct]
gi|118763947|gb|AAI28574.1| Estrogen receptor 1 [Homo sapiens]
gi|118764400|gb|AAI28575.1| Estrogen receptor 1 [Homo sapiens]
gi|119568125|gb|EAW47740.1| estrogen receptor 1, isoform CRA_a [Homo sapiens]
gi|306921463|dbj|BAJ17811.1| estrogen receptor 1 [synthetic construct]
gi|348019627|gb|AEP43755.1| estrogen nuclear receptor alpha [Homo sapiens]
Length = 595
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 182 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 241
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D R GR+ + + V + R N P+
Sbjct: 242 LRKCYEVGMMKGGIRKDR---RGGRMLKHKRQRDDGEGRGEVGSAGDM-RAANLWPSPLM 297
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+ +L T+ ++ D P + Y E +P P
Sbjct: 298 IKRSKKNSLALSLTADQMVSALLDAEP-------------------PILYSEYDPTRP-F 337
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 338 SEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 397
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 398 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 454
>gi|290560664|ref|NP_001166846.1| ecdysone receptor isoform B1 [Bombyx mori]
gi|1706574|sp|P49881.1|ECR_BOMMO RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone
receptor; Short=20E receptor; AltName: Full=EcRH;
AltName: Full=Ecdysteroid receptor; AltName:
Full=Nuclear receptor subfamily 1 group H member 1
gi|793745|gb|AAA87341.1| 20-hydroxy-ecdysone receptor [Bombyx mori]
Length = 606
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/340 (29%), Positives = 148/340 (43%), Gaps = 36/340 (10%)
Query: 20 LSSASSSPGC----DTSR----PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC D R P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 176 LSPASSINGCSADADARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 235
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
K + Y+C AC +D R +CQ CR +KCL VGM E V + K + + K K
Sbjct: 236 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVIQEPSKNKDRQRQKKDKG 295
Query: 132 -----------------PQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTS 174
Q PP P + I + P L + E + + L
Sbjct: 296 ILLPVSTTTVEDHMPPIMQCDPPPPEAARIHEVV--PRYLSEKLMEQNRQKNIPPLSANQ 353
Query: 175 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTT 234
+I G+ ED + + Q+ + E + P +Q +
Sbjct: 354 KSLIARLVWYQEGYEQPSDEDLKRVTQTWQSD---EEDEESDLP------FRQITEMTIL 404
Query: 235 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEK 294
+V +I FA +PGFS + + DQ L +++S E+ +LR+A R A ++F N +
Sbjct: 405 TVQLIVEFAKGLPGFSKISQSDQITLLKASSSEVMMLRVARRYDAASDSVLFANNKAYTR 464
Query: 295 QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ + +L FC+ + M +D FA L A+ +
Sbjct: 465 DNYRQGGMAYVIEDLLHFCRCMFAMGMDNVHFALLTAIVI 504
>gi|66793362|ref|NP_001019402.1| estrogen receptor [Felis catus]
gi|75069755|sp|Q53AD2.1|ESR1_FELCA RecName: Full=Estrogen receptor; Short=ER; AltName: Full=ER-alpha;
AltName: Full=Estradiol receptor; AltName: Full=Nuclear
receptor subfamily 3 group A member 1
gi|51860645|gb|AAU11443.1| estrogen receptor alpha [Felis catus]
Length = 595
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 141/301 (46%), Gaps = 33/301 (10%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 182 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 241
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D R GR+ + E V + R N P+
Sbjct: 242 LRKCYEVGMMKGGIRKDR---RGGRMLKHKRQRDEGEGRNEVG-SSGDVRASNLWPSPL- 296
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE----LFYREPNPL 215
+I+H P S DQ + SA LE + Y + +P
Sbjct: 297 -----------------LIKHTKKNSPALS--LTADQMV---SALLEAEPPIIYSDYDP- 333
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
P +E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +
Sbjct: 334 SRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLSLHDQVHLLECAWLEILMIGLVW 393
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ KL+F ++L++ Q + G + + +L +M + F CL ++ L
Sbjct: 394 RSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIIL 453
Query: 335 I 335
+
Sbjct: 454 L 454
>gi|443698635|gb|ELT98532.1| hypothetical protein CAPTEDRAFT_125155 [Capitella teleta]
Length = 427
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 148/312 (47%), Gaps = 42/312 (13%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LC +CGD A+ HY +CEGCKGFF+R+V +G++YVC C +D R RCQ CR
Sbjct: 59 ELCLICGDRASGYHYNALSCEGCKGFFRRSVTRGAEYVCKIGGNCEMDMWMRRRCQACRL 118
Query: 101 QKCLQVGM---------------VKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLIT 145
Q+C +VGM V+ R S+K R +P S P S++
Sbjct: 119 QRCREVGMKEECLLSEEQCKARDVRRKARQRSVKSVDHRETPQPSPDSNSSPRRGESVVG 178
Query: 146 ALYREPNPLEPPIAEPEK-IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 204
L PNPL+ +E K I+Q V+ ++P DL ++
Sbjct: 179 PL---PNPLDYISSEHRKLIEQL---------VLYQEKFELPSEKDLA--------NISA 218
Query: 205 LELFYR-EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 263
+++ R P+ L I K ++L T + V FA +PGF+ KEDQ +L +
Sbjct: 219 VKISDRGRPDSLSLAIY---KHMAEMTILVTQLVV--EFAKSLPGFASQHKEDQIMLLKG 273
Query: 264 ASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDI 323
++ E+ +LR A R E +IF NG K + D+++ + +FC+ + + +D
Sbjct: 274 SACEVMMLRTARRYDVETDTVIFGNGTPFTKDSLRFGGLQDYVDGMFKFCRGMGALGVDN 333
Query: 324 SAFACLCALTLI 335
+ +A L A+ L
Sbjct: 334 AEYALLTAICLF 345
>gi|301782151|ref|XP_002926490.1| PREDICTED: retinoic acid receptor beta-like isoform 2 [Ailuropoda
melanoleuca]
Length = 448
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + PSK + + + + +T E
Sbjct: 141 CFEVGMSKESVRND--RNKKKKEPSKQECTESYEMTAELDDLT----------------E 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 183 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|5821726|gb|AAD52984.1| estrogen receptor alpha [Homo sapiens]
Length = 444
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 31 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 90
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D R GR+ + + V + R N P+
Sbjct: 91 LRKCYEVGMMKGGIRKDR---RGGRMLKHKRQRDDGEGRGEVGSAGDM-RAANLWPSPLM 146
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+ +L T+ ++ D P + Y E +P P
Sbjct: 147 IKRSKKNSLALSLTADQMVSALLDAEP-------------------PILYSEYDPTRP-F 186
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 187 SEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 246
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 247 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 303
>gi|189031268|gb|ACD74807.1| ecdysone receptor [Helicoverpa armigera]
Length = 545
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 149/341 (43%), Gaps = 37/341 (10%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 116 LSPASSVNGCSTDGEARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 175
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV----------RTDSLKGR 121
K + Y+C AC +D R +CQ CR +KCL VGM E V + +
Sbjct: 176 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRKEKKAQRE 235
Query: 122 RGRLP--------SKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTT 173
+ +LP P Q PP P + I + P L + E +++ L
Sbjct: 236 KDKLPVSTTTVDDHMPPIMQCDPPPPEAARIHEVV--PRFLNEKLMEQNRLKNVPPLTAN 293
Query: 174 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLT 233
+I G+ +ED + + Q+ + E +Q +
Sbjct: 294 QKSLIARLVWYQEGYEQPSEEDLKRVTQTWQSD---------EDDEDSDMPFRQITEMTI 344
Query: 234 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLE 293
+V +I FA +PGF+ + + DQ L ++ S E+ +LR+A R A ++F N
Sbjct: 345 LTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYT 404
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 405 RDNYRKAGMAYVIEDLLHFCRCMYSMMMDNVHYALLTAIVI 445
>gi|1197855|gb|AAB00115.1| 80 kDa estrogen receptor [Homo sapiens]
Length = 701
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 182 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 241
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D R GR+ + + V + R N P+
Sbjct: 242 LRKCYEVGMMKGGIRKDR---RGGRMLKHKRQRDDGEGRGEVGSAGDM-RAANLWPSPLM 297
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+ +L T+ ++ D P + Y E +P P
Sbjct: 298 IKRSKKNSLALSLTADQMVSALLDAEP-------------------PILYSEYDPTRP-F 337
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 338 SEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 397
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 398 HPVKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 454
>gi|345806213|ref|XP_858806.2| PREDICTED: retinoic acid receptor RXR-alpha isoform 11 [Canis lupus
familiaris]
Length = 492
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 157/339 (46%), Gaps = 69/339 (20%)
Query: 11 SPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQHYG 56
SP+L S+P++ SSS G + P PS +CA+CGD ++ +HYG
Sbjct: 121 SPQL--SSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYG 178
Query: 57 VRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTD 116
V +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ +
Sbjct: 179 VYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEE 238
Query: 117 SLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVD 176
+G+ + ++ ES T+ E P+E KI +
Sbjct: 239 RQRGK-----DRNENEVES---------TSSANEDMPVE-------KILE---------- 267
Query: 177 VIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSV 236
++L E + + A++ L PN I + Q F
Sbjct: 268 ------------AELAVEPKTETYVDANMGLNPNSPNDPVTNICQAADKQLF-------- 307
Query: 237 DVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ 296
+ +A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + +
Sbjct: 308 -TLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNS 366
Query: 297 CQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ G + + E + M++D S CL A+ L
Sbjct: 367 AHSAGVGAIFDRVLTELVSKMRDMQMDKSELGCLRAIVL 405
>gi|61367423|gb|AAX42995.1| estrogen receptor 1 [synthetic construct]
Length = 596
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 182 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 241
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D R GR+ + + V + R N P+
Sbjct: 242 LRKCYEVGMMKGGIRKDR---RGGRMLKHKRQRDDGEGRGEVGSAGDM-RAANLWPSPLM 297
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+ +L T+ ++ D P + Y E +P P
Sbjct: 298 IKRSKKNSLALSLTADQMVSALLDAEP-------------------PILYSEYDPTRP-F 337
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 338 SEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 397
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 398 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 454
>gi|133907530|gb|ABO42265.1| estrogen-related receptor isoform-3 [Halocynthia roretzi]
Length = 527
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 141/301 (46%), Gaps = 51/301 (16%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+P +LC VCGD+A+ HYGV +CE CK FFKRT+Q Y C + C + KRRR CQ
Sbjct: 192 APKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIDYTCPSSNDCEITKRRRKSCQS 251
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSL--ITALYREPNPLE 155
CRF KCL+VGM++E VR D ++G R + K S P++ + AL + + L
Sbjct: 252 CRFTKCLRVGMLREGVRLDRVRGGRQKYKKKTTSENTERFQLPITQHQLPALNKVVSHL- 310
Query: 156 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK-EDQELLFQSASLELFYREPNP 214
+AEP K+ T+ + S LC D+EL+
Sbjct: 311 -LLAEPGKL--------TTAQNTKEAKGGENILSTLCDLADRELV--------------- 346
Query: 215 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
VI +A IPGFS L DQ L QSA +E+ +L +A
Sbjct: 347 -----------------------VIIGWAKHIPGFSILPLADQMALLQSAWMEILILGIA 383
Query: 275 YRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + + +F + VL+ + CQ + + +A+L+ + L + + + F + A+ L
Sbjct: 384 FTSLQFGDEHVFADDFVLDVETCQSTGLSELSSALLQLQRRLKSHKPNKAEFVVMKAIAL 443
Query: 335 I 335
+
Sbjct: 444 V 444
>gi|73989931|ref|XP_850755.1| PREDICTED: retinoic acid receptor beta isoform 2 [Canis lupus
familiaris]
gi|410971533|ref|XP_003992222.1| PREDICTED: retinoic acid receptor beta isoform 1 [Felis catus]
Length = 448
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + PSK + + + + +T E
Sbjct: 141 CFEVGMSKESVRND--RNKKKKEPSKQECTESYEMTAELDDLT----------------E 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 183 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|426217053|ref|XP_004002768.1| PREDICTED: retinoic acid receptor RXR-gamma [Ovis aries]
Length = 463
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 136/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECANSGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + T + V I H ADK
Sbjct: 247 EPKTESYGDMNTENSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 376
>gi|68342537|gb|AAC32789.3| retinoid X receptor homolog [Uca pugilator]
Length = 465
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 159/334 (47%), Gaps = 54/334 (16%)
Query: 19 PLSSASSSPGCDTSRPT--PPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
P + SS+ ++ P+ PPS LC++CGD A+ +HYGV +CEGCKGFFKRTV
Sbjct: 75 PFTIGSSNTTGLSTSPSQYPPSHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTV 134
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
+K Y C +++C +DKR+RNRCQ+CR+QKCL +GM +E V+ + + + + +S
Sbjct: 135 RKDLTYACREERSCTIDKRQRNRCQYCRYQKCLTMGMKREAVQEERQRTKGDKGDGDTES 194
Query: 132 PQESPPSPPVSLITALYREPNPL-EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 190
+ P++ I +P+ E P+ + ++Q +P
Sbjct: 195 SCGAISDMPIASIREAELSVDPIDEQPLDQGVRLQ-------------------VP---- 231
Query: 191 LCKEDQELLFQSASLELFYREPNPLEPPIAE---PEKIQQFYSLLTTSVDVIRH------ 241
L D E S L + P++E +Q S + + D RH
Sbjct: 232 LAPPDSE----KCSFTLPFH-------PVSEVSCANPLQDVVSNICQAAD--RHLVQLVE 278
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC-QRS 300
+A IP F+DL EDQ +L ++ EL + ++R+ + ++ G+V+ + Q
Sbjct: 279 WAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQAG 338
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M+ID + CL ++ L
Sbjct: 339 VGAIFDRVLSELVAKMKEMKIDKTELGCLRSIVL 372
>gi|262410963|gb|ACY66850.1| estrogen-related receptor [Chironomus riparius]
Length = 443
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 154/335 (45%), Gaps = 40/335 (11%)
Query: 7 SSSESPKLRHSAPLSSASSSPGCDTSRPTPPS---PSQLCAVCGDIAACQHYGVRTCEGC 63
+S SP + + +SA G D++ P +LC VCGD+A+ HYGV +CE C
Sbjct: 57 TSPGSPDRQFCSSTTSAIGDFGNDSNVQDTVKEELPRRLCLVCGDVASGFHYGVASCEAC 116
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
K FFKRTVQ +Y C A+ C ++KRRR CQ CRF+KCL +GM+KE VR D ++G R
Sbjct: 117 KAFFKRTVQGNIEYTCPANNDCEINKRRRKACQACRFRKCLMMGMLKEGVRLDRVRGGRQ 176
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
+ P +P L+ P + + Q + +DV+ F
Sbjct: 177 KYRRNPNM------------------QPYQLQIPHSSAQPPQSLDDI--KMLDVLMTF-- 214
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDV----I 239
E ++L ++L + + + + Q+ ++L+ D +
Sbjct: 215 ----------EPEKLCVGHCGIDLMNKNDDDQKNECVGTDA-QEMLNILSDLYDKELVGV 263
Query: 240 RHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR 299
+A +IPGF+DL DQ L Q + E+ L LA+R+ +L F + L+++ +
Sbjct: 264 IGWAKQIPGFTDLPLNDQMRLLQVSWAEILTLMLAFRSIPFTGRLYFASDFWLDERSAKE 323
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ N ++ Q L + + L ALTL
Sbjct: 324 CGATELYNHCIQITQRLEKISASKEEYYLLKALTL 358
>gi|149729680|ref|XP_001494165.1| PREDICTED: retinoic acid receptor beta isoform 1 [Equus caballus]
gi|291399724|ref|XP_002716266.1| PREDICTED: retinoic acid receptor, beta isoform 2 [Oryctolagus
cuniculus]
gi|395816622|ref|XP_003781797.1| PREDICTED: retinoic acid receptor beta [Otolemur garnettii]
Length = 448
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + PSK + + + + +T E
Sbjct: 141 CFEVGMSKESVRND--RNKKKKEPSKQECTESYEMTAELDDLT----------------E 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 183 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|328704916|ref|XP_001946085.2| PREDICTED: ecdysone-induced protein 75B, isoforms C/D
[Acyrthosiphon pisum]
Length = 1026
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 148/300 (49%), Gaps = 25/300 (8%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 195 LCRVCGDRASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCNILRINRNRCQYCRL 254
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPL---EPP 157
+KC+ VGM ++ VR GR+P + K+ ++ A+ N +
Sbjct: 255 RKCISVGMSRDAVRF-------GRVPKREKA----------RIMAAMQHSSNSKSQEKAA 297
Query: 158 IAEPEKIQQFY-SLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
+AE E Q+ S++ ++ +DK+ +E +L P+P
Sbjct: 298 VAELEDDQRLVASVVRAHLETCDFTSDKVAPTLARAREQPNYTLCHPTLACPL-NPSP-R 355
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
P + E + F + ++ + FA +IPGF L ++DQ L ++ E+ ++RLA
Sbjct: 356 PVTGQQELLNDFSKRFSPAIRGVVEFAKRIPGFGLLAQDDQVTLLKAGVFEVLLVRLACM 415
Query: 277 TRAEDTKLIFCNGVVLEKQQ-CQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+E ++ NG VL ++ C S +++ EF + L+ M ++ S A+ +I
Sbjct: 416 FDSECNSMVTLNGQVLRRESVCAYSNARFLTDSMFEFAERLNAMRLNDSEIGLFNAVIVI 475
>gi|115495279|ref|NP_001068876.1| retinoic acid receptor RXR-gamma [Bos taurus]
gi|119367365|sp|Q0VC20.1|RXRG_BOVIN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|111305288|gb|AAI20392.1| Retinoid X receptor, gamma [Bos taurus]
gi|296489911|tpg|DAA32024.1| TPA: retinoic acid receptor RXR-gamma [Bos taurus]
Length = 463
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 136/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECANSGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + T + V I H ADK
Sbjct: 247 EPKTESYGDMNTENSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 376
>gi|227150229|gb|ACP19739.1| putative retinoid X receptor [Calanus finmarchicus]
Length = 405
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 117/223 (52%), Gaps = 21/223 (9%)
Query: 6 SSSSESPKLRHSAPLSSASS-----SPGCDTSRPTPPS--PSQ-------LCAVCGDIAA 51
++ + SP + S P S+++S SPG P P + PS +C++CGD A+
Sbjct: 31 TTVNNSPMMSQS-PTSASTSFMGFGSPGGGQKSPLPGTYPPSHPLSGAKHMCSICGDRAS 89
Query: 52 CQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKE 111
+HYGV +CEGCKGFFKRTV+K Y C DK C +DKR+RNRCQFCR+ KC+ +GM +E
Sbjct: 90 GKHYGVYSCEGCKGFFKRTVRKELSYACREDKQCLIDKRQRNRCQFCRYNKCMAMGMKRE 149
Query: 112 VVRTDSLKGRRGRLPSKPKSPQES---PPSPPVSLITALYR--EPNPLEPPIAEPEKIQ- 165
V+ + +G RG + S P P I R + + E E + IQ
Sbjct: 150 AVQEERQRGSRGDKNGGDDEVEGSVLGPGDMPTDRILEAERICDKHEREQLTNEGDDIQA 209
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+F + + +A +IP F+ LC +DQ L + EL
Sbjct: 210 KFKFAAEKQLTSLVEWAKQIPHFTSLCLDDQVALLRGGWNELM 252
>gi|5702091|gb|AAD47137.1|AF061181_1 green fluorescent protein-estrogen receptor alpha fusion [Mammalian
expression vector pCI-nGL1-HEGO]
Length = 866
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 453 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 512
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D R GR+ + + V + R N P+
Sbjct: 513 LRKCYEVGMMKGGIRKDR---RGGRMLKHKRQRDDGEGRGEVGSAGDM-RAANLWPSPLM 568
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+ +L T+ ++ D P + Y E +P P
Sbjct: 569 IKRSKKNSLALSLTADQMVSALLDAEP-------------------PILYSEYDPTRP-F 608
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 609 SEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 668
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 669 HPVKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 725
>gi|350418251|ref|XP_003491800.1| PREDICTED: ecdysone receptor-like isoform 2 [Bombus impatiens]
Length = 591
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 146/327 (44%), Gaps = 34/327 (10%)
Query: 29 CDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKAC 85
CD + P+P Q LC VCGD A+ HY TCEGCKGFF+R++ K + Y C C
Sbjct: 195 CDARKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNC 254
Query: 86 PVDKRRRNRCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGRLPSKPKSPQESPP 137
+D R +CQ CR +KCL VGM E V+ K ++ + + SP
Sbjct: 255 EIDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEKKAQKEKDKPNSTTMNGSPG 314
Query: 138 SPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 197
S S + EP AE E SL T+ I + E +E
Sbjct: 315 SGIRSDQMGVKIEP-------AEAE------SLSTSGSSGILTPVSPYGYVKPISPEQEE 361
Query: 198 LLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP 247
L+ + + Y +P+ P E K + + +V +I F+ ++P
Sbjct: 362 LIHRLVYFQNEYEQPSEEDLKRITNQPSEGEDISDYKFRHITEITILTVQLIVEFSKRLP 421
Query: 248 GFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLN 307
GF +L +EDQ L ++ S E+ +LR+A + + +IF N + + + +
Sbjct: 422 GFDELMREDQMALLKACSSEVMMLRMARKYDVQTDSIIFANNQPYTRDSYNVAGMGETIE 481
Query: 308 AILEFCQSLHLMEIDISAFACLCALTL 334
+L FC+ ++ M+++ + +A L A+ +
Sbjct: 482 DLLHFCRQMYAMKVNNAEYALLTAIVI 508
>gi|311268593|ref|XP_001926863.2| PREDICTED: retinoic acid receptor beta isoform 1 [Sus scrofa]
Length = 448
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + PSK + + + + +T E
Sbjct: 141 CFEVGMSKESVRND--RNKKKKEPSKQECTESYEMTAELDDLT----------------E 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 183 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFASQLLPLEMDDTETGLLSAICLI 328
>gi|405973035|gb|EKC37772.1| Retinoic acid receptor RXR-alpha-A [Crassostrea gigas]
Length = 413
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 142/313 (45%), Gaps = 54/313 (17%)
Query: 31 TSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKR 90
T PS + C +C D + HY V +CEGCKGFFKR+VQK Y C + +C ++K
Sbjct: 65 TGGEDSPSNASPCMICNDRGSGYHYSVFSCEGCKGFFKRSVQKNLVYTCKNEGSCVINKF 124
Query: 91 RRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVS-----LIT 145
RN CQ+CRF KC Q+GM +E VR D G + R K P+ VS L
Sbjct: 125 TRNNCQYCRFVKCTQMGMKREAVREDRSPGGKHR----NKKPRLDEIRAMVSSDGEVLFV 180
Query: 146 ALYREPNP---LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 202
+E P E PI E +I D IP + D + QS
Sbjct: 181 PGTQESKPTESFEDPIME---------------GLINARPDLIP------RVDGNICLQS 219
Query: 203 ASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ 262
+ + +Q Y+ L +D +A K+PGF++L EDQ L +
Sbjct: 220 MGIN----------------QLMQYGYAELKYIID----WAKKVPGFTELRLEDQMALLK 259
Query: 263 SASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR-SFGDDWLNAILEFCQSLHLMEI 321
S+ +EL VLRL+YR+ + + F G+ + + Q+ +G + + A +EF L + I
Sbjct: 260 SSFMELNVLRLSYRSMETGSCIKFAEGLKVPIELAQKMGWGKELVAATVEFSARLKELSI 319
Query: 322 DISAFACLCALTL 334
D F L + L
Sbjct: 320 DKVEFCILNGIVL 332
>gi|354474025|ref|XP_003499232.1| PREDICTED: retinoic acid receptor beta-like isoform 1 [Cricetulus
griseus]
Length = 448
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + PSK + + + + +T E
Sbjct: 141 CFEVGMSKESVRND--RNKKKKEPSKQECTESYEMTAELDDLT----------------E 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 183 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|3929579|gb|AAC80008.1| retinoic acid X receptor [Tripedalia cystophora]
Length = 435
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 106/201 (52%), Gaps = 36/201 (17%)
Query: 30 DTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDK 89
D+ RP P C+VC D A +HYGV CEGCKGFFKR+V+ KY CL + C DK
Sbjct: 98 DSQRPVQP-----CSVCSDKAYVKHYGVFACEGCKGFFKRSVRNNRKYSCLGKRHCDTDK 152
Query: 90 RRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGR----RGRLPSKPK-SPQESPPSP---PV 141
+ RNRCQ+CRFQKC+QVGM E V+ ++LK R RLPS PK SP E S P+
Sbjct: 153 KSRNRCQYCRFQKCVQVGMKPEAVQDETLKKERKDYRKRLPSTPKGSPAEVTSSKVDLPM 212
Query: 142 SLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH--------------FADKIPG 187
I ++ ++P IQ F S + D IRH +A ++P
Sbjct: 213 IPIESIIAAETLVDP------GIQTFAS---ANTDPIRHVCLAADKQLASLAEWAKRLPH 263
Query: 188 FSDLCKEDQELLFQSASLELF 208
F DL DQ +L Q + EL
Sbjct: 264 FRDLSIADQVVLLQWSWPELL 284
>gi|45593124|ref|NP_035373.1| retinoic acid receptor beta [Mus musculus]
gi|8170810|gb|AAB25784.2| retinoic acid nuclear receptor isoform beta 2 [Mus sp.]
gi|49904685|gb|AAH76597.1| Retinoic acid receptor, beta [Mus musculus]
gi|148688696|gb|EDL20643.1| retinoic acid receptor, beta, isoform CRA_a [Mus musculus]
gi|226403|prf||1510302B retinoic acid receptor beta
Length = 448
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + PSK + + + + +T E
Sbjct: 141 CFEVGMSKESVRND--RNKKKKEPSKQECTESYEMTAELDDLT----------------E 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 183 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|383854432|ref|XP_003702725.1| PREDICTED: ecdysone receptor-like [Megachile rotundata]
Length = 570
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 147/328 (44%), Gaps = 34/328 (10%)
Query: 29 CDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKAC 85
CD + P+P Q LC VCGD A+ HY TCEGCKGFF+R++ K + Y C C
Sbjct: 174 CDARKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNC 233
Query: 86 PVDKRRRNRCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGRLPSKPKSPQESPP 137
+D R +CQ CR +KCL VGM E V+ K ++ + + SP
Sbjct: 234 EIDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRQEKKAQKEKDKPNSTTMNGSPG 293
Query: 138 SPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 197
S + + EP AE E SL T+ I + E +E
Sbjct: 294 SGIRAEQMGVKTEP-------AEAE------SLSTSGSSGILTPVSPYSYVKPITPEQEE 340
Query: 198 LLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP 247
L+ + + Y +P+ P E K + + +V +I F+ ++P
Sbjct: 341 LIQRVVYFQNEYEQPSEEDLKRITNQPSEGEDISDYKFRHITEITILTVQLIVEFSKRLP 400
Query: 248 GFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLN 307
GF +L +EDQ L ++ S E+ +LR+A + + +IF N ++ + + +
Sbjct: 401 GFDELMREDQIALLKACSSEVMMLRMARKYDVQTDSIIFANNQPYSRESYNLAGMGETIE 460
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
+L FC+ ++ M+++ + +A L A+ +
Sbjct: 461 DLLHFCRQMYAMKVNNAEYALLTAIVIF 488
>gi|401461796|ref|NP_113717.1| retinoic acid receptor, beta [Rattus norvegicus]
gi|149040008|gb|EDL94092.1| retinoic acid receptor, beta [Rattus norvegicus]
Length = 448
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + PSK + + + + +T E
Sbjct: 141 CFEVGMSKESVRND--RNKKKKEPSKQECTESYEMTAELDDLT----------------E 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 183 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|22761810|dbj|BAC11713.1| ecdysone receptor A isoform [Chilo suppressalis]
Length = 518
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 153/344 (44%), Gaps = 37/344 (10%)
Query: 20 LSSASSSPGCDT---SR-----PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T SR P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 82 LSPASSVNGCSTDGESRRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 141
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV----------RTDSLKGR 121
K + Y+C AC +D R +CQ CR +KCL VGM E V + +
Sbjct: 142 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPETTCAIKRKEKKAQRE 201
Query: 122 RGRLP--------SKPKSPQESPPSPPVS-LITALYRE--PNPLEPPIAEPEKIQQFYSL 170
+ +LP P Q PP P + ++ L E P L + E +++ L
Sbjct: 202 KDKLPVSTTTVDDHMPPIMQCDPPPPEAARILECLQHEVVPRFLSEKLMEQNRLKNIPPL 261
Query: 171 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYS 230
+I G+ +ED + + Q+ E L +Q
Sbjct: 262 TANQQFLIARLVWYQDGYEQPSEEDLKRVTQTWQSNEDEEEETDL--------PFRQITE 313
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ +V +I FA +PGFS + + DQ L ++ S E+ +LR+A R A ++F N
Sbjct: 314 MTILTVQLIVEFAKGLPGFSKISQPDQITLLKACSSEVMMLRVARRYDAASDSVLFANNQ 373
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +++ + +L FC+ ++ + +D +A L A+ +
Sbjct: 374 AYTRDNYRKAGMAYVIEDLLHFCRCMYSLSMDNVHYALLTAVVI 417
>gi|22761812|dbj|BAC11714.1| ecdysone receptor B1 isoform [Chilo suppressalis]
Length = 547
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 153/344 (44%), Gaps = 37/344 (10%)
Query: 20 LSSASSSPGCDT---SR-----PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC T SR P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 111 LSPASSVNGCSTDGESRRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 170
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV----------RTDSLKGR 121
K + Y+C AC +D R +CQ CR +KCL VGM E V + +
Sbjct: 171 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPETTCAIKRKEKKAQRE 230
Query: 122 RGRLP--------SKPKSPQESPPSPPVS-LITALYRE--PNPLEPPIAEPEKIQQFYSL 170
+ +LP P Q PP P + ++ L E P L + E +++ L
Sbjct: 231 KDKLPVSTTTVDDHMPPIMQCDPPPPEAARILECLQHEVVPRFLSEKLMEQNRLKNIPPL 290
Query: 171 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYS 230
+I G+ +ED + + Q+ E L +Q
Sbjct: 291 TANQQFLIARLVWYQDGYEQPSEEDLKRVTQTWQSNEDEEEETDL--------PFRQITE 342
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ +V +I FA +PGFS + + DQ L ++ S E+ +LR+A R A ++F N
Sbjct: 343 MTILTVQLIVEFAKGLPGFSKISQPDQITLLKACSSEVMMLRVARRYDAASDSVLFANNQ 402
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +++ + +L FC+ ++ + +D +A L A+ +
Sbjct: 403 AYTRDNYRKAGMAYVIEDLLHFCRCMYSLSMDNVHYALLTAVVI 446
>gi|395530718|ref|XP_003767435.1| PREDICTED: retinoic acid receptor RXR-gamma [Sarcophilus harrisii]
Length = 470
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 145/329 (44%), Gaps = 74/329 (22%)
Query: 12 PKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
P ++ +S S+SPG +CA+CGD ++ +HYGV +CEGCKGFFKRT+
Sbjct: 123 PGIQGMGTMSYPSTSPGS--------LAKHICAICGDRSSGKHYGVYSCEGCKGFFKRTI 174
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ + + R R ++ +S
Sbjct: 175 RKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRE-RSENEVES 233
Query: 132 PQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTS-----VDVIRHFADKIP 186
PV I LE +A K + + + + V I H ADK
Sbjct: 234 TSSGHEDMPVERI---------LEAELAVEPKTESYGNTNMENSTNDPVTNICHAADK-- 282
Query: 187 GFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 246
Q ++L+ +A +I
Sbjct: 283 ----------------------------------------QLFTLV--------EWAKRI 294
Query: 247 PGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDW 305
P FSDL EDQ +L ++ EL + ++R+ ++ G+ + + + G +
Sbjct: 295 PHFSDLTLEDQVILLRAGWNELLIASFSHRSVTVQDGILLATGLHVHRSSAHSAGVGSIF 354
Query: 306 LNAILEFCQSLHLMEIDISAFACLCALTL 334
+ E + M++D S CL A+ L
Sbjct: 355 DRVLTELVSKMKDMQMDKSELGCLRAIVL 383
>gi|340726649|ref|XP_003401667.1| PREDICTED: ecdysone receptor-like isoform 2 [Bombus terrestris]
Length = 589
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 146/327 (44%), Gaps = 34/327 (10%)
Query: 29 CDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKAC 85
CD + P+P Q LC VCGD A+ HY TCEGCKGFF+R++ K + Y C C
Sbjct: 193 CDARKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNC 252
Query: 86 PVDKRRRNRCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGRLPSKPKSPQESPP 137
+D R +CQ CR +KCL VGM E V+ K ++ + + SP
Sbjct: 253 EIDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEKKAQKEKDKPNSTTMNGSPG 312
Query: 138 SPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 197
S S + EP AE E SL T+ I + E +E
Sbjct: 313 SGIRSDQMGVKIEP-------AEAE------SLSTSGSSGILTPVSPYGYVKPISPEQEE 359
Query: 198 LLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP 247
L+ + + Y +P+ P E K + + +V +I F+ ++P
Sbjct: 360 LIHRLVYFQNEYEQPSEEDLKRITNQPSEGEDISDYKFRHITEITILTVQLIVEFSKRLP 419
Query: 248 GFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLN 307
GF +L +EDQ L ++ S E+ +LR+A + + +IF N + + + +
Sbjct: 420 GFDELMREDQMALLKACSSEVMMLRMARKYDVQTDSIIFANNQPYTRDSYNVAGMGETIE 479
Query: 308 AILEFCQSLHLMEIDISAFACLCALTL 334
+L FC+ ++ M+++ + +A L A+ +
Sbjct: 480 DLLHFCRQMYAMKVNNAEYALLTAIVI 506
>gi|60892853|gb|AAX37291.1| nuclear receptor usp/RXR [Xenos pecki]
Length = 405
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 113/209 (54%), Gaps = 14/209 (6%)
Query: 11 SPKLRHSAPLSSASSSPGCDTSRPTPPSP-----SQLCAVCGDIAACQHYGVRTCEGCKG 65
+P ++ P++++S+S C PP+ LCA+CGD A+ +HYGV +CEGCKG
Sbjct: 48 TPNSPNTYPMANSSNSQNCIVKTNYPPNHPLSNYKHLCAICGDKASGKHYGVYSCEGCKG 107
Query: 66 FFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRL 125
FFKRTV+K Y C +K+C VD+R+RNRCQ+CR+QKCL +GM +E V+ + +R +
Sbjct: 108 FFKRTVRKDLTYACREEKSCLVDRRQRNRCQYCRYQKCLAMGMKREAVQEER---QRNKD 164
Query: 126 PSKPKSPQESPPS------PPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIR 179
ES S P ++ A R +E P+ + F T + I
Sbjct: 165 RENTSGEVESTSSYVFNDMPIERILEAERRIDCKIEFPVEFENSVSNFCQATNTQLFQII 224
Query: 180 HFADKIPGFSDLCKEDQELLFQSASLELF 208
+A IP F+ L DQ +L +++ EL
Sbjct: 225 DWAKHIPYFTSLPVADQVVLLKASWNELL 253
>gi|312190943|gb|ADQ43370.1| ecdysone receptor isoform A [Nezara viridula]
Length = 444
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 156/350 (44%), Gaps = 38/350 (10%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPS----QLCAVCGDIAACQHYG 56
++LGR S + L + S+ CD S+ S + +LC VCGD A+ HY
Sbjct: 36 SKLGREDLSPANSL-------NGFSADSCDGSKKKKGSAARQQEELCLVCGDRASGYHYN 88
Query: 57 VRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTD 116
TCEGCKGFF+R++ K + Y C C +D R +CQ CR +KCL VGM E V
Sbjct: 89 ALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLSVGMRPECV--- 145
Query: 117 SLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVD 176
+ + + K K Q+ PVS +P + EP ++ T
Sbjct: 146 -VPEYQCAVKRKEKKAQKD-KDKPVSTTNG-----SPESIKVEEPHRVVYKTEGETLGRP 198
Query: 177 VIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN-----------PLEPPIAEPEKI 225
V I G + E +EL+ + + Y P+ P E ++
Sbjct: 199 V------PINGVKPVSPEQEELIHRLVYFQNEYEHPSEEDLRRIVSNTPNEDEEQSDQRF 252
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
+ + +V +I FA ++PGF L +EDQ L ++ S E+ +LR+A + A ++
Sbjct: 253 RHLTEITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMLRMARKYDATTDSIL 312
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
F N ++ + D + +L FC+ + M++D + +A L A+ +
Sbjct: 313 FANNQPYNRESYSLAGMGDVIEDLLRFCRHMFNMKVDNAEYALLTAIVIF 362
>gi|18031835|gb|AAL02361.1| retinoic acid receptor beta-2 [Mesocricetus auratus]
Length = 448
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + PSK + + + + +T E
Sbjct: 141 CFEVGMSKESVRND--RNKKKKEPSKQECTESYEMTAELDDLT----------------E 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 183 KIRKAHQ----------------ETFPSLCQLAKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|70907501|emb|CAH69898.1| retinoid X receptor [Blattella germanica]
Length = 436
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 145/314 (46%), Gaps = 56/314 (17%)
Query: 34 PTPPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
P PP+ LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C DK C +D
Sbjct: 81 PYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIID 140
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
KR+RNRCQ+CR+QKCL +GM +E V+ + R R + ++ ES S +
Sbjct: 141 KRQRNRCQYCRYQKCLSMGMKREAVQEE-----RQRTKERDQNEVESTSSLHTDM----- 190
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ----SAS 204
P+E + ++++ CK +Q++ F+ +
Sbjct: 191 ----PVERILEAEKRVE--------------------------CKSEQQVEFELRCWNRK 220
Query: 205 LELFYR--EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ 262
++ + R E N + P A Q L V+ +H IP F+ L DQ LL +
Sbjct: 221 VDAWRRRAELNGVGPKSAVTNICQATNKQLFQLVEWAKH----IPHFTTLPLSDQVLLLR 276
Query: 263 SASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC-QRSFGDDWLNAILEFCQSLHLMEI 321
+ EL + ++R+ ++ G+ + + Q G + + E + M++
Sbjct: 277 AGWNELLIAAFSHRSVEVKDGIVLATGLTVHRNSAHQAGVGAIFDRVLTELVAKMREMKM 336
Query: 322 DISAFACLCALTLI 335
D + CL ++ L
Sbjct: 337 DKTELGCLRSVILF 350
>gi|6983809|emb|CAB75361.1| USP protein [Tenebrio molitor]
Length = 408
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 142/322 (44%), Gaps = 63/322 (19%)
Query: 18 APLSSASSSPGCDTSRPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQK 73
P S + + C + P P P LC++CGD A+ +HYGV +CEGCKGFFKRTV+K
Sbjct: 59 GPPSGGTPNKSCGSLYP-PNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRK 117
Query: 74 GSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQ 133
Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ + R R + S
Sbjct: 118 DLSYACREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEE-----RQRTKDRDTSEV 172
Query: 134 ESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 193
ES T+ + PL+ I ++I+ T ++ G +++C+
Sbjct: 173 ES---------TSNMQAEMPLDRIIEAEKRIE------CTPAGGSGGVGEQHDGVNNICQ 217
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 253
+ LFQ + +A IP F+ L
Sbjct: 218 ATNKQLFQ-------------------------------------LVQWAKLIPHFTSLP 240
Query: 254 KEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR-SFGDDWLNAILEF 312
DQ LL ++ EL + ++R+ ++ G+ + K G+ + + E
Sbjct: 241 MSDQVLLLRAGWNELLIAAFSHRSIQAQDAIVLATGLTVNKTSAHAVGVGNIYDRVLSEL 300
Query: 313 CQSLHLMEIDISAFACLCALTL 334
+ M++D + CL A+ L
Sbjct: 301 VNKMKEMKMDKTELGCLRAIIL 322
>gi|34365271|emb|CAE45969.1| hypothetical protein [Homo sapiens]
Length = 310
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 137/297 (46%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 9 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 68
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D R GR+ + + V + R N P+
Sbjct: 69 LRKCYEVGMMKGGIRKDR---RGGRMLKHKRQRDDGEGRGEVGSAGDM-RAANLWPSPLM 124
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+ +L T+ ++ D P + Y E +P P
Sbjct: 125 IKRSKKNSLALSLTADQMVSALLDAEP-------------------PILYSEYDPTRP-F 164
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 165 SEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 224
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 225 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSILLL 281
>gi|1710810|sp|P51129.1|RXRG_XENLA RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 470
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 140/298 (46%), Gaps = 60/298 (20%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C K C +DKR+RNRCQ+CR+
Sbjct: 144 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDSKDCLIDKRQRNRCQYCRY 203
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + R S+ KS E+ + S E P+E I E
Sbjct: 204 QKCLAMGMKREAVQEE-------RQRSREKSDTEAESTSSTS-------EEMPVER-ILE 248
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
E +VD KI F D A L PN P+
Sbjct: 249 AE----------LAVD------PKIEAFGD------------AGL------PNSTNDPVT 274
Query: 221 E--PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++R+
Sbjct: 275 NICHAADKQLFTLV--------EWAKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSV 326
Query: 279 AEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 327 SVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELVSKMKDMDMDKSELGCLRAIVLF 384
>gi|431915756|gb|ELK16089.1| Oxysterols receptor LXR-alpha [Pteropus alecto]
Length = 449
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 152/317 (47%), Gaps = 49/317 (15%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D
Sbjct: 86 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMD 145
Query: 89 KRRRNRCQFCRFQKCLQVGMVKE-VVRTDSLKGRRGRLPSKPKSPQESPP----SPPVSL 143
R +CQ CR +KC Q GM +E V+ + ++ ++ + + K+ S P SPP L
Sbjct: 146 TYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEKAQATSLPPRASSPPQVL 205
Query: 144 ITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 203
P PE++ L+ R FSD +
Sbjct: 206 -------------PQLSPEQLGMIEKLVAAQQQCNRR------SFSDRLRVT-------- 238
Query: 204 SLELFYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQEL 259
P P+ P E QQ F L SV I FA ++PGF L +EDQ
Sbjct: 239 --------PWPVAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIA 290
Query: 260 LFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHL 318
L +++++E+ +L + R E + F ++ ++ +++N I EF ++++
Sbjct: 291 LLKTSAIEVMLLETSRRYNPESESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNE 350
Query: 319 MEIDISAFACLCALTLI 335
++++ + FA L A+++
Sbjct: 351 LQLNDAEFALLIAISIF 367
>gi|6677829|ref|NP_033133.1| retinoic acid receptor RXR-gamma isoform 1 [Mus musculus]
gi|1350914|sp|P28705.2|RXRG_MOUSE RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|200882|gb|AAA40082.1| retinoid X receptor-gamma [Mus musculus]
gi|386367|gb|AAB27244.1| retinoid-X receptor-gamma isoform 1 [Mus sp.]
gi|34849539|gb|AAH58401.1| Retinoid X receptor gamma [Mus musculus]
gi|148707231|gb|EDL39178.1| retinoid X receptor gamma [Mus musculus]
Length = 463
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 136/295 (46%), Gaps = 56/295 (18%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + S PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECASSSHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
K + + ++V D + +++C + LF
Sbjct: 247 EPKTESY-----GDMNVENSTNDPV---TNICHAADKQLF-------------------- 278
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ +A +IP FSDL EDQ +L ++ EL + ++R+ +
Sbjct: 279 -----------------TLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSV 321
Query: 281 DTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 322 QDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 376
>gi|289629241|ref|NP_001166202.1| retinoic acid receptor beta [Cavia porcellus]
gi|51092411|gb|AAP33792.2| retinoic acid receptor beta [Cavia porcellus]
Length = 410
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + PSK + + + + +T E
Sbjct: 141 CFEVGMSKESVRND--RNKKKKEPSKQECTESYEMTAELDDLT----------------E 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 183 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|397517262|ref|XP_003828835.1| PREDICTED: steroid hormone receptor ERR1 [Pan paniscus]
Length = 506
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 135/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 159 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 218
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D + R GR Q+ P V + P
Sbjct: 219 RFTKCLRVGMLKEGVRLDRV--RGGR--------QKYKRRPEVDPLPFPGPFPAGPLAVA 268
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
P K +L++ H L E ++L Y P+P P
Sbjct: 269 GGPRKTAPVNALVS-------HL---------LVVEPEKL----------YAMPDPAGPD 302
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 303 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 361
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 362 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 417
>gi|307166258|gb|EFN60472.1| Steroid hormone receptor ERR2 [Camponotus floridanus]
Length = 558
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 123/230 (53%), Gaps = 26/230 (11%)
Query: 4 GRSSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
G + S ESP++ H + + +P D + P +LC VCGD+A+ HYGV +CE C
Sbjct: 179 GSNGSPESPEMHHCSSTTQPLGTPE-DGVKEEDMIPRRLCLVCGDVASGFHYGVASCEAC 237
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
K FFKRT+Q +Y C A+ C ++KRRR CQ CRFQKCL+ GM+KE VR D ++G R
Sbjct: 238 KAFFKRTIQGNIEYTCPANGECEINKRRRKACQACRFQKCLRQGMLKEGVRLDRVRGGRQ 297
Query: 124 --RLPSKPKSPQESP----------PSPPVS--LITALYR-EPNPLE-PPIAEPEKIQQF 167
R + P +P +S P+ ++ L+ AL EP+ L+ I+ E Q+
Sbjct: 298 KYRRSADPYTPVKSATLEANVASGGPTETINNKLVEALAACEPDMLQVSNISTQETDQKV 357
Query: 168 YSLLTTSVD------VIRH---FADKIPGFSDLCKEDQELLFQSASLELF 208
L+ D + R+ +A +IPGFS L DQ L QS E+
Sbjct: 358 LGQLSDLYDRELVGIIGRYQPRWAKQIPGFSSLALNDQMRLLQSTWAEIL 407
>gi|301608498|ref|XP_002933799.1| PREDICTED: retinoic acid receptor RXR-gamma [Xenopus (Silurana)
tropicalis]
Length = 468
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 137/298 (45%), Gaps = 60/298 (20%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C K C +DKR+RNRCQ+CR+
Sbjct: 142 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDTKDCLIDKRQRNRCQYCRY 201
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R + ++ +S + PV I LE +A
Sbjct: 202 QKCLAMGMKREAVQEERQRSRE-KSDTEAESTSSTSEEMPVERI---------LEAELAV 251
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
KI+ F G + L PN P+
Sbjct: 252 EPKIEAF-------------------GDAGL--------------------PNSTNDPVT 272
Query: 221 E--PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++R+
Sbjct: 273 NICHAADKQLFTLV--------EWAKRIPHFSDLPLEDQVILLRAGWNELLIASFSHRSV 324
Query: 279 AEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ ++ G+ + + + G + + E + ME+D S CL A+ L
Sbjct: 325 SVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELVSKMKDMEMDKSELGCLRAIVLF 382
>gi|388325215|gb|AFK27931.1| ecdysone receptor B1 isoform B [Spodoptera litura]
Length = 590
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 150/344 (43%), Gaps = 41/344 (11%)
Query: 20 LSSASSSPGCDTSR--------PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS A S GC T P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 157 LSPAPSVNGCSTDGEARRQKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 216
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV----------RTDSLKGR 121
K + Y+C AC +D R +CQ CR +KCL VGM E V + +
Sbjct: 217 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRKEKKAQRE 276
Query: 122 RGRLP--------SKPKSPQESPPSPPVS-LITALYRE--PNPLEPPIAEPEKIQQFYSL 170
+ +LP P Q PP P + ++ L E P L PI E +++ L
Sbjct: 277 KDKLPVSTTTVDDHMPPIMQCDPPPPGAARILECLQNEVLPRYLTEPIMEQNRLKNVPPL 336
Query: 171 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYS 230
+I G+ +ED + +S E P +Q
Sbjct: 337 SPNQKSLIARLVWYQEGYEQPSEEDLRRITESDEDEEESDMP------------FRQITE 384
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ +V +I FA +PGF+ + + DQ L ++ S E+ +LR+A R A ++F N
Sbjct: 385 MTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAPTDSVLFANNQ 444
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 445 AYTRDNYRKAGMAYVIEDLLHFCRCMYAMPMDNIQYALLTAIVI 488
>gi|350418247|ref|XP_003491799.1| PREDICTED: ecdysone receptor-like isoform 1 [Bombus impatiens]
Length = 537
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 146/328 (44%), Gaps = 34/328 (10%)
Query: 29 CDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKAC 85
CD + P+P Q LC VCGD A+ HY TCEGCKGFF+R++ K + Y C C
Sbjct: 141 CDARKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNC 200
Query: 86 PVDKRRRNRCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGRLPSKPKSPQESPP 137
+D R +CQ CR +KCL VGM E V+ K ++ + + SP
Sbjct: 201 EIDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEKKAQKEKDKPNSTTMNGSPG 260
Query: 138 SPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 197
S S + EP AE E SL T+ I + E +E
Sbjct: 261 SGIRSDQMGVKIEP-------AEAE------SLSTSGSSGILTPVSPYGYVKPISPEQEE 307
Query: 198 LLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP 247
L+ + + Y +P+ P E K + + +V +I F+ ++P
Sbjct: 308 LIHRLVYFQNEYEQPSEEDLKRITNQPSEGEDISDYKFRHITEITILTVQLIVEFSKRLP 367
Query: 248 GFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLN 307
GF +L +EDQ L ++ S E+ +LR+A + + +IF N + + + +
Sbjct: 368 GFDELMREDQMALLKACSSEVMMLRMARKYDVQTDSIIFANNQPYTRDSYNVAGMGETIE 427
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
+L FC+ ++ M+++ + +A L A+ +
Sbjct: 428 DLLHFCRQMYAMKVNNAEYALLTAIVIF 455
>gi|344288071|ref|XP_003415774.1| PREDICTED: retinoic acid receptor beta isoform 1 [Loxodonta
africana]
Length = 448
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 131/293 (44%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + PSK + + + + +T R+ +
Sbjct: 141 CFEVGMSKESVRND--RNKKKKEPSKQECTESYEMTAELDDLTETIRKAHQ--------- 189
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
+ F SL AD L+L +
Sbjct: 190 --ETFPSLCQLGKYTTNSSAD-----------------HRVRLDLGLWD----------- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|283945526|ref|NP_001164665.1| retinoic acid receptor, alpha [Xenopus (Silurana) tropicalis]
Length = 458
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 129/293 (44%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 85 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 144
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K ++ EPP A+
Sbjct: 145 CFEVGMSKESVRNDRNKKKK--------------------------------EPPKAD-- 170
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
+ + Y L + D+I K QE L + + E +
Sbjct: 171 -VMESYVLSPETEDLIEKVR----------KAHQETFPALCQLGKYTTNFSSEERVSLDI 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+ +F L T + FA ++PGF+ L DQ L +SA L++ +LR+ R +
Sbjct: 220 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKSACLDILILRICTRYTPDQD 279
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 280 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 332
>gi|340726647|ref|XP_003401666.1| PREDICTED: ecdysone receptor-like isoform 1 [Bombus terrestris]
Length = 537
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 146/328 (44%), Gaps = 34/328 (10%)
Query: 29 CDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKAC 85
CD + P+P Q LC VCGD A+ HY TCEGCKGFF+R++ K + Y C C
Sbjct: 141 CDARKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNC 200
Query: 86 PVDKRRRNRCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGRLPSKPKSPQESPP 137
+D R +CQ CR +KCL VGM E V+ K ++ + + SP
Sbjct: 201 EIDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEKKAQKEKDKPNSTTMNGSPG 260
Query: 138 SPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 197
S S + EP AE E SL T+ I + E +E
Sbjct: 261 SGIRSDQMGVKIEP-------AEAE------SLSTSGSSGILTPVSPYGYVKPISPEQEE 307
Query: 198 LLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP 247
L+ + + Y +P+ P E K + + +V +I F+ ++P
Sbjct: 308 LIHRLVYFQNEYEQPSEEDLKRITNQPSEGEDISDYKFRHITEITILTVQLIVEFSKRLP 367
Query: 248 GFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLN 307
GF +L +EDQ L ++ S E+ +LR+A + + +IF N + + + +
Sbjct: 368 GFDELMREDQMALLKACSSEVMMLRMARKYDVQTDSIIFANNQPYTRDSYNVAGMGETIE 427
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
+L FC+ ++ M+++ + +A L A+ +
Sbjct: 428 DLLHFCRQMYAMKVNNAEYALLTAIVIF 455
>gi|35883|emb|CAA30262.1| unnamed protein product [Homo sapiens]
Length = 448
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 130/293 (44%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K + K S QE S Y L+ +
Sbjct: 141 CFEVGMSKESVRNDRNKKK------KETSKQECTES---------YEMTAELDDLTEKIR 185
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + SA + L+ + +
Sbjct: 186 KAHQ-------------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLQPLEMDDTETGLLSAICLI 328
>gi|390470743|ref|XP_002755520.2| PREDICTED: steroid hormone receptor ERR1-like [Callithrix jacchus]
Length = 506
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 135/296 (45%), Gaps = 37/296 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 159 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 218
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D + R GR Q+ P V + P
Sbjct: 219 RFTKCLRVGMLKEGVRLDRV--RGGR--------QKYKRRPEVDPLPFPGPFPAGPLAVA 268
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
P K +L++ H L E ++L Y P+P P
Sbjct: 269 GGPRKTAPVNALVS-------HL---------LVVEPEKL----------YAMPDPAGPD 302
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 303 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 361
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+L F +VL+++ + + + A+L+ + L + ++ + L AL L
Sbjct: 362 PLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALAL 417
>gi|332219399|ref|XP_003258843.1| PREDICTED: retinoic acid receptor RXR-gamma [Nomascus leucogenys]
Length = 463
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 136/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECATGGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + T + V I H ADK
Sbjct: 247 EPKTESYGDMNTENSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 376
>gi|321479389|gb|EFX90345.1| hypothetical protein DAPPUDRAFT_205205 [Daphnia pulex]
Length = 712
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 151/310 (48%), Gaps = 46/310 (14%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 99 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRL 158
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++ VR GR+P + K+ ++ A+ + +AE
Sbjct: 159 KKCIAVGMSRDAVRF-------GRVPKREKA----------KILAAM----QSVNARLAE 197
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN------- 213
+F + V+R + D +E ++L A +R+PN
Sbjct: 198 RSLPAEFADEVQLMQSVVRAHMETC----DFTREKVQILMADA-----HRQPNYTACPPT 248
Query: 214 ---PLEPPIA----EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
PL P A + + +Q F ++ + FA ++PGF+ L ++D+ L +
Sbjct: 249 LACPLNPTPAPSNGQQQLLQDFSERFLPAIRDVVEFAKRLPGFTLLAEDDKVTLLKPGVF 308
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWL-NAILEFCQSLHLMEIDISA 325
E+ ++RLA ++ ++ NG +L + S +L +++ EF + L+ + ++ S
Sbjct: 309 EVLLVRLAAMFDSQSNTMLCLNGQLLRRDALHNSSNARFLMDSMFEFAERLNSLALNDSE 368
Query: 326 FACLCALTLI 335
CA+ +I
Sbjct: 369 LGLFCAVVVI 378
>gi|66864092|dbj|BAD99297.1| ecdysone receptor B1 isoform [Leptinotarsa decemlineata]
Length = 488
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 154/350 (44%), Gaps = 41/350 (11%)
Query: 3 LGRSSSSESPKLRHSAPLSSAS--SSPGCDTSRPTPPSPSQ---LCAVCGDIAACQHYGV 57
L +S +S +P SS + S+ CD + P+P Q LC VCGD A+ HY
Sbjct: 77 LAKSDTSSMSGREDLSPPSSLNGFSADSCDAKKKKGPTPRQQEELCLVCGDRASGYHYNA 136
Query: 58 RTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTD- 116
TCEGCKGFF+R+V K + Y C C +D R +CQ CR +KCL VGM E V +
Sbjct: 137 LTCEGCKGFFRRSVTKNAVYKCKYGANCEIDMYMRRKCQECRLKKCLAVGMRAECVVPEV 196
Query: 117 --SLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTS 174
++K + + P + P + EP L ++E EK
Sbjct: 197 QCAVKRNEKKKQKEKDKPNSTTNGSP----EVIKIEPETLFFQLSENEKT---------- 242
Query: 175 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREP----------NPLEPPIAEPEK 224
G + E +EL+ + + Y P PLE +
Sbjct: 243 ---------IFNGVKPISPEQEELIHRLVYFQNEYEHPAEEDVKRIMNQPLESEDQCDVR 293
Query: 225 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKL 284
+ + +V +I FA ++PGF L +EDQ L ++ S E+ + R+A R + +
Sbjct: 294 FRHITEITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDFQTDSI 353
Query: 285 IFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+F N + + + + +L FC++++ M++D + +A L A+ +
Sbjct: 354 LFVNNQPYSRDSYNLAGMGETIEDLLHFCRTMYSMKVDNAEYALLTAIVI 403
>gi|395532564|ref|XP_003768340.1| PREDICTED: retinoic acid receptor alpha-A-like [Sarcophilus
harrisii]
Length = 437
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 133/295 (45%), Gaps = 49/295 (16%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 85 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 144
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE-P 161
C +VGM KE VR D + K +E+P A E L P + E
Sbjct: 145 CFEVGMSKESVRND-----------RNKKKKETP--------KAECSESYTLTPEVEELI 185
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA- 220
EK+++ + + P L K Y N E ++
Sbjct: 186 EKVRKAHQ-------------ETFPALCQLGK---------------YTTNNSSEQRVSL 217
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + +F L T + FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 218 DIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPE 277
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 278 QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 332
>gi|426256478|ref|XP_004021867.1| PREDICTED: retinoic acid receptor beta isoform 1 [Ovis aries]
Length = 448
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + PSK + + + + +T E
Sbjct: 141 CFEVGMSKESVRND--RNKKKKEPSKQECTESYEMTAELDDLT----------------E 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 183 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFAGQLLPLEMDDAETGLLSAICLI 328
>gi|147902511|ref|NP_001088948.1| retinoid X receptor, gamma [Xenopus laevis]
gi|57032681|gb|AAH88915.1| LOC496325 protein [Xenopus laevis]
Length = 470
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 137/298 (45%), Gaps = 60/298 (20%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C K C +DKR+RNRCQ+CR+
Sbjct: 144 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDSKDCLIDKRQRNRCQYCRY 203
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R + ++ +S + PV I LE +A
Sbjct: 204 QKCLAMGMKREAVQEERQRSRE-KSDTEAESTSSTSEEMPVERI---------LEAELAV 253
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
KI+ F G + L PN P+
Sbjct: 254 DPKIEAF-------------------GDAGL--------------------PNSTNDPVT 274
Query: 221 E--PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++R+
Sbjct: 275 NICHAADKQLFTLV--------EWAKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSV 326
Query: 279 AEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 327 SVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELVSKMKDMDMDKSELGCLRAIVLF 384
>gi|296199469|ref|XP_002747161.1| PREDICTED: estrogen receptor isoform 1 [Callithrix jacchus]
Length = 594
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 136/297 (45%), Gaps = 26/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 182 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 241
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K + K RRG K K ++ T R N P+
Sbjct: 242 LRKCYEVGMMKGIR-----KDRRGGRMLKHKRQRDDGEGRNEVGSTGDLRAANLWPSPL- 295
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+I+H P S L + A + Y E +P P
Sbjct: 296 -----------------MIKHSKKNSPALS-LTADQMVSALLDAEPPIIYSEYDPTR-PF 336
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 337 SEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME 396
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 397 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 453
>gi|156395075|ref|XP_001636937.1| predicted protein [Nematostella vectensis]
gi|156224045|gb|EDO44874.1| predicted protein [Nematostella vectensis]
Length = 307
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 130/297 (43%), Gaps = 57/297 (19%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG--SKYVCL--ADKACPVDKRRRNRCQFC 98
CAVCGD ++ HYG TCEGCK FFKRTVQ+G KY C+ CP+DK R +CQ C
Sbjct: 7 CAVCGDESSGYHYGAYTCEGCKSFFKRTVQRGLVKKYSCVRSNQNQCPMDKNSRAKCQAC 66
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
R Q+C GMV VR + +G R K P E+P + + P P P
Sbjct: 67 RLQRCFDAGMVLNGVRKEKKRGGRSFYTLK-SDPNETPTTEKLP-------SPTPSSPDT 118
Query: 159 AEPEKIQQFYSLLTTSVD-VIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
A + +TS+ ++R P F L R N +
Sbjct: 119 AHID---------STSISPLLRDLLASNPCF------------------LLIRLSNAI-- 149
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
T + +I +A +PGF DLC+EDQ L +A +EL V R+ +R+
Sbjct: 150 ---------------TKELHIIVDWAKLVPGFKDLCQEDQITLLTAAGMELVVFRVIFRS 194
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ L+++ C + ++ +L+ L + +D FACL A+ L
Sbjct: 195 IPLPNYIYMTTTTCLQREGCYEILNKEIVDMLLDVVDRLRSVGLDTVEFACLMAILL 251
>gi|354469910|ref|XP_003497355.1| PREDICTED: oxysterols receptor LXR-alpha-like isoform 1 [Cricetulus
griseus]
gi|354469912|ref|XP_003497356.1| PREDICTED: oxysterols receptor LXR-alpha-like isoform 2 [Cricetulus
griseus]
gi|354469914|ref|XP_003497357.1| PREDICTED: oxysterols receptor LXR-alpha-like isoform 3 [Cricetulus
griseus]
Length = 445
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 149/313 (47%), Gaps = 41/313 (13%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D
Sbjct: 82 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMD 141
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KCLQ GM +E V ++ + + + Q + SP VS
Sbjct: 142 TYMRRKCQECRLRKCLQAGMREECVLSEEQIRLKKLKRQEEEQAQATSVSPRVS------ 195
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVI-RHFADKIPGFSDLCKEDQELLFQSASLEL 207
P P PE++ L+ R F+D++
Sbjct: 196 --SAPQVLPQLSPEQLGMIEKLVAAQQQCNQRSFSDRL---------------------- 231
Query: 208 FYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 263
P P+ P E QQ F L SV I FA ++PGF L +EDQ L ++
Sbjct: 232 -RVTPWPIAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKT 290
Query: 264 ASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEID 322
+++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 291 SAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLN 350
Query: 323 ISAFACLCALTLI 335
+ FA L A+++
Sbjct: 351 DAEFALLIAISIF 363
>gi|284157379|gb|ADB79814.1| E75 nuclear receptor [Daphnia pulex]
Length = 954
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 151/310 (48%), Gaps = 46/310 (14%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 97 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRL 156
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++ VR GR+P + K+ ++ A+ + +AE
Sbjct: 157 KKCIAVGMSRDAVRF-------GRVPKREKA----------KILAAM----QSVNARLAE 195
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN------- 213
+F + V+R + D +E ++L A +R+PN
Sbjct: 196 RSLPAEFADEVQLMQSVVRAHMETC----DFTREKVQILMADA-----HRQPNYTACPPT 246
Query: 214 ---PLEPPIA----EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
PL P A + + +Q F ++ + FA ++PGF+ L ++D+ L +
Sbjct: 247 LACPLNPTPAPSNGQQQLLQDFSERFLPAIRDVVEFAKRLPGFTLLAEDDKVTLLKPGVF 306
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWL-NAILEFCQSLHLMEIDISA 325
E+ ++RLA ++ ++ NG +L + S +L +++ EF + L+ + ++ S
Sbjct: 307 EVLLVRLAAMFDSQSNTMLCLNGQLLRRDVLHNSSNARFLMDSMFEFAERLNSLALNDSE 366
Query: 326 FACLCALTLI 335
CA+ +I
Sbjct: 367 LGLFCAVVVI 376
>gi|149058123|gb|EDM09280.1| retinoid X receptor gamma, isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 134/300 (44%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECASTGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + S V I H ADK
Sbjct: 247 EPKTESYGDMSVESSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M +D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMRMDKSELGCLRAIVL 376
>gi|194270637|gb|ACF36863.1| nuclear receptor E75 protein [Fenneropenaeus chinensis]
Length = 798
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 146/306 (47%), Gaps = 38/306 (12%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 31 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRL 90
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++ VR GR+P + K+ I A + N E
Sbjct: 91 KKCIAVGMSRDAVRF-------GRVPKREKAK-----------ILAAMQSVNARS---QE 129
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYRE--------- 211
+Q+ + +IR D D ++ + Q A Y +
Sbjct: 130 RAVLQELEDDTRVTAAIIRAHMDTC----DFTRDKVAPMHQQARTHPSYTQCPPTLACPL 185
Query: 212 -PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFV 270
P P+ P + E +Q F + ++ + FA ++PGF L +EDQ L ++ E+ +
Sbjct: 186 SPRPV-PLQGQQELVQDFSERFSPAIRGVVEFAKRLPGFQQLPQEDQVTLLKAGVFEVLL 244
Query: 271 LRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWL-NAILEFCQSLHLMEIDISAFACL 329
+RLA A ++ NG +L ++ S +L +++ +F + ++ + + + A
Sbjct: 245 VRLAGMFDARTNTMLCLNGQLLRREALHTSVNARFLMDSMFDFAERVNSLSLSDAELALF 304
Query: 330 CALTLI 335
CA+ ++
Sbjct: 305 CAVVVL 310
>gi|186659995|gb|ACC85903.1| estrogen receptor, partial [Myxine glutinosa]
Length = 405
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 150/308 (48%), Gaps = 38/308 (12%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
+ CAVC D+A+ HYGV +CEGCK FFKR++Q + YVC A C +DK RR CQ CR
Sbjct: 4 THFCAVCSDLASGYHYGVWSCEGCKAFFKRSIQGRTNYVCPATNQCTIDKNRRKSCQACR 63
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
++C +VGMV++ + + RR P++ PQ+ S + + E P +
Sbjct: 64 LRRCHEVGMVRDACQRE----RRAPCPTRKAEPQQIQKS-----VVHEHME----NPMAS 110
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP- 218
+P + + Y + S V F++ E S S E F EPP
Sbjct: 111 KPSQAKDGYLNVRPSGPV---------KFANAMVEP----LGSLSSEQFLTCLLNAEPPN 157
Query: 219 ------IAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLEL 268
++ P ++ LLT D + +A K+PGF + DQ LL +S+ LE+
Sbjct: 158 MTCHHDVSRPFTAERLMMLLTNLADRELVHMIGWAKKVPGFVQISLRDQVLLLESSWLEV 217
Query: 269 FVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFA 327
++ L +R+ ++ KL+F + ++L++ + G + + +L Q +++ + +
Sbjct: 218 LIMGLIWRSMSQPGKLVFASNLILDRDDGECVEGIFEIFDILLNIVQHFRELQVWMDEYV 277
Query: 328 CLCALTLI 335
CL A+ L+
Sbjct: 278 CLKAIILL 285
>gi|126352536|ref|NP_001075241.1| estrogen receptor [Equus caballus]
gi|12230056|sp|Q9TV98.1|ESR1_HORSE RecName: Full=Estrogen receptor; Short=ER; AltName: Full=ER-alpha;
AltName: Full=Estradiol receptor; AltName: Full=Nuclear
receptor subfamily 3 group A member 1
gi|4325290|gb|AAD17316.1| estrogen receptor alpha [Equus caballus]
Length = 594
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 141/303 (46%), Gaps = 37/303 (12%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 182 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 241
Query: 100 FQKCLQVGMVKEVVRTDSLKGR---RGRLPSKPKSPQESPPSP---PVSLITALYREPNP 153
+KC +VGM+K +R D GR R + E+ PS P + P+P
Sbjct: 242 LRKCYEVGMMKGGIRKDRRGGRMLKHKRQRDDGEGRNEAGPSGDRRPANFW------PSP 295
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
L I +KI SL T+ +I D P + Y E +
Sbjct: 296 LL--IKHTKKISPVLSL--TAEQMISALLDAEP-------------------PVLYSEYD 332
Query: 214 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
P E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L
Sbjct: 333 ATRP-FNEASMMGLLTNLADRELVHMINWAKRVPGFVDLSLHDQVHLLECAWLEILMIGL 391
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCAL 332
+R+ KL+F ++L++ Q + G + + +L L +M + F CL ++
Sbjct: 392 VWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRLRMMNLQGEEFVCLKSI 451
Query: 333 TLI 335
L+
Sbjct: 452 ILL 454
>gi|344247839|gb|EGW03943.1| Oxysterols receptor LXR-alpha [Cricetulus griseus]
Length = 402
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 149/313 (47%), Gaps = 41/313 (13%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D
Sbjct: 39 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMD 98
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KCLQ GM +E V ++ + + + Q + SP VS
Sbjct: 99 TYMRRKCQECRLRKCLQAGMREECVLSEEQIRLKKLKRQEEEQAQATSVSPRVS------ 152
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVI-RHFADKIPGFSDLCKEDQELLFQSASLEL 207
P P PE++ L+ R F+D++
Sbjct: 153 --SAPQVLPQLSPEQLGMIEKLVAAQQQCNQRSFSDRL---------------------- 188
Query: 208 FYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 263
P P+ P E QQ F L SV I FA ++PGF L +EDQ L ++
Sbjct: 189 -RVTPWPIAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKT 247
Query: 264 ASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEID 322
+++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 248 SAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLN 307
Query: 323 ISAFACLCALTLI 335
+ FA L A+++
Sbjct: 308 DAEFALLIAISIF 320
>gi|281348859|gb|EFB24443.1| hypothetical protein PANDA_002085 [Ailuropoda melanoleuca]
Length = 447
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 121 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKDCLIDKRQRNRCQYCRY 180
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 181 QKCLVMGMKREAVQEERQRSRE-RAESEAECASSGHEDMPVERI---------LEAELAV 230
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 231 EPKTESYGDMNMENSTNDPVTNICHAADK------------------------------- 259
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 260 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 300
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 301 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 360
>gi|121308144|emb|CAL25729.1| ultraspiracle nuclear receptor [Tribolium castaneum]
Length = 407
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 145/325 (44%), Gaps = 63/325 (19%)
Query: 16 HSAPLSSASSSPGCDTSRPTPPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
H + LS + ++P ++ P PP+ LC++CGD A+ +HYGV +CEGCKGFFKRT
Sbjct: 54 HGSLLSPSGNTPNKSSTSPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 113
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
V+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ + R R +
Sbjct: 114 VRKDLSYACREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEE-----RQRTKDRDT 168
Query: 131 SPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 190
S ES T+ + PLE I ++++ L+ V+ + I
Sbjct: 169 SEVES---------TSNLQADMPLERIIEAEKRVECNDPLVALVVNENNTTVNNI----- 214
Query: 191 LCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 250
C+ + LFQ + +A +P F+
Sbjct: 215 -CQATHKQLFQ-------------------------------------LVQWAKLVPHFT 236
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR-SFGDDWLNAI 309
L DQ L ++ EL + ++R+ ++ G+ + K G+ + +
Sbjct: 237 SLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGNIYDRVL 296
Query: 310 LEFCQSLHLMEIDISAFACLCALTL 334
E + M++D + CL A+ L
Sbjct: 297 SELVNKMKEMKMDKTELGCLRAIIL 321
>gi|443691595|gb|ELT93409.1| hypothetical protein CAPTEDRAFT_164614 [Capitella teleta]
Length = 540
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 134/299 (44%), Gaps = 67/299 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD A+ +HYGV +CEGCKGFFKRTV+K +Y C +K+C +DKR+RNRCQFCR+
Sbjct: 219 HICAICGDRASGKHYGVHSCEGCKGFFKRTVRKDLQYACRDEKSCLIDKRQRNRCQFCRY 278
Query: 101 QKCLQVGMVKEVVRTDSLKGRR---GRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
KCL +GM +E V+ + + + G + S + QE P V I LE
Sbjct: 279 MKCLSMGMKREAVQEERQRVKEKGEGEVESTTNANQEMP----VERI---------LEAE 325
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
+A K + +V I ADK
Sbjct: 326 LAVEPKTDTYLDAQKDAVTNICQAADK--------------------------------- 352
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
Q ++L+ +A ++P F++L EDQ +L ++ EL + ++R+
Sbjct: 353 ---------QLFTLVD--------WAKRVPHFTELPLEDQVILLRAGWNELLIAGFSHRS 395
Query: 278 RAEDTKLIFCNGVVLEKQQC-QRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
A ++ G+ + + Q G + + E + M +D + CL A+ L
Sbjct: 396 TAVKDGILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMNMDKTELGCLRAIVLF 454
>gi|293628866|dbj|BAJ05027.1| estrogen receptor alpha [Hynobius tokyoensis]
Length = 584
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 151/317 (47%), Gaps = 35/317 (11%)
Query: 21 SSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCL 80
+S SP ++++ T + CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C
Sbjct: 161 ASEKGSPSMESTKET-----RYCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCP 215
Query: 81 ADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP 140
A C +DK RR CQ CR +KC +VGM+K +R D RRG K K +E P P
Sbjct: 216 ATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKD----RRGGRLMKHKRQKEEPDQKP 271
Query: 141 VSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLF 200
+ R + P A+ K S+ T+ ++ + P + +LL
Sbjct: 272 EEAASET-RTASIWANPSAKTVKKNPVLSM--TAEQLLSALIEAEPPIVYSEHDPSKLLS 328
Query: 201 QSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL 260
+++ + L +A+ E + ++A ++PGF DL DQ L
Sbjct: 329 EASMMTLLTN--------LADKELVHMI------------NWAKRVPGFVDLSLHDQVHL 368
Query: 261 FQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ--CQRSFGDDWLNAILEFCQSLHL 318
+ A LE+ ++ L +R+ KL F ++L++ Q C F + + + ++ +
Sbjct: 369 LECAWLEILMVGLVWRSVEHPGKLSFAPNLLLDRNQGRCVEGFVEIF-DMLVTTAARFRV 427
Query: 319 MEIDISAFACLCALTLI 335
M+++ F CL ++ L+
Sbjct: 428 MKLEGEEFMCLKSIILL 444
>gi|66864090|dbj|BAD99296.1| ecdysone receptor A isoform [Leptinotarsa decemlineata]
Length = 565
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 144/326 (44%), Gaps = 39/326 (11%)
Query: 25 SSPGCDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLA 81
S+ CD + P+P Q LC VCGD A+ HY TCEGCKGFF+R+V K + Y C
Sbjct: 178 SADSCDAKKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKNAVYKCKY 237
Query: 82 DKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTD---SLKGRRGRLPSKPKSPQESPPS 138
C +D R +CQ CR +KCL VGM E V + ++K + + P +
Sbjct: 238 GANCEIDMYMRRKCQECRLKKCLAVGMRAECVVPEVQCAVKRNEKKKQKEKDKPNSTTNG 297
Query: 139 PPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQEL 198
P + EP L ++E EK G + E +EL
Sbjct: 298 SP----EVIKIEPETLFFQLSENEKT-------------------IFNGVKPISPEQEEL 334
Query: 199 LFQSASLELFYREP----------NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 248
+ + + Y P PLE + + + +V +I FA ++PG
Sbjct: 335 IHRLVYFQNEYEHPAEEDVKRIMNQPLESEDQCDVRFRHITEITILTVQLIVEFAKRLPG 394
Query: 249 FSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNA 308
F L +EDQ L ++ S E+ + R+A R + ++F N + + + +
Sbjct: 395 FDKLLREDQIALLKACSSEVMMFRMARRYDFQTDSILFVNNQPYSRDSYNLAGMGETIED 454
Query: 309 ILEFCQSLHLMEIDISAFACLCALTL 334
+L FC++++ M++D + +A L A+ +
Sbjct: 455 LLHFCRTMYSMKVDNAEYALLTAIVI 480
>gi|301618490|ref|XP_002938647.1| PREDICTED: estrogen-related receptor gamma-like [Xenopus (Silurana)
tropicalis]
Length = 441
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 114/230 (49%), Gaps = 32/230 (13%)
Query: 4 GRSSSSESPKL-RHSAP--LSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTC 60
G S ESP + R+ P + + SP +P +LC VCGD+A+ HYGV +C
Sbjct: 70 GTLSGLESPSMTRNHKPFEIRDETESPA-KADYTVSVAPKRLCLVCGDVASGYHYGVASC 128
Query: 61 EGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKG 120
E CK FFKRT+Q +Y C A + C + KRRR CQ CRF KCL+VGM+KE VR D ++G
Sbjct: 129 EACKAFFKRTIQGNIEYSCPASRQCEITKRRRKSCQSCRFAKCLKVGMLKEGVRLDRVRG 188
Query: 121 RRGRLPSKPKSPQES------PPSPPVSLITALYREPNPLEPPIAEPEKIQQF------- 167
R + + +S PSP + + N L +AEPEKI
Sbjct: 189 GRQKYKRRMESENSGVHGIQIHPSPKKAYTKIV---SNLL---LAEPEKIYAMPDPTVPD 242
Query: 168 --YSLLTTSVD-------VIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
LTT D VI +A IPGFS L DQ L Q A +E+
Sbjct: 243 SDIKTLTTLCDLADRELVVIIGWAKHIPGFSSLSLGDQMSLLQGAWMEIL 292
>gi|2780196|emb|CAA11109.1| retinoic acid X receptor gamma-1 [Rattus norvegicus]
Length = 322
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 138/318 (43%), Gaps = 70/318 (22%)
Query: 27 PGCDTSRPTPPSPSQL----CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAD 82
PG SP L CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +
Sbjct: 40 PGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDN 99
Query: 83 KACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVS 142
K C +DKR+RNRCQ+CR+QKCL +GM +E V+ + + R R S+ + PV
Sbjct: 100 KDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRE-RAESEAECASTGHEDMPVE 158
Query: 143 LITALYREPNPLEPPIAEPEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQE 197
I LE +A K + + + S V I H ADK
Sbjct: 159 RI---------LEAELAVEPKTESYGDMSVESSTNDPVTNICHAADK------------- 196
Query: 198 LLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 257
Q ++L+ +A +IP FSDL EDQ
Sbjct: 197 -----------------------------QLFTLV--------EWAKRIPHFSDLTLEDQ 219
Query: 258 ELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSL 316
+L ++ EL + ++R+ + ++ G+ + + + G + + E +
Sbjct: 220 VILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKM 279
Query: 317 HLMEIDISAFACLCALTL 334
M +D S CL A+ L
Sbjct: 280 KDMRMDKSELGCLRAIVL 297
>gi|332023527|gb|EGI63763.1| Steroid hormone receptor ERR2 [Acromyrmex echinatior]
Length = 440
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 119/226 (52%), Gaps = 22/226 (9%)
Query: 4 GRSSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
G ++ ESP++ H + + +P D + P +LC VCGD+A+ HYGV +CE C
Sbjct: 65 GAITNPESPEMHHCSSTTQPLGTPE-DGMKEEDLLPRRLCLVCGDVASGFHYGVASCEAC 123
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
K FFKRT+Q +Y C A+ C ++KRRR CQ CRFQKCL+ GM+KE VR D ++G R
Sbjct: 124 KAFFKRTIQGNIEYTCPANSECEINKRRRKACQACRFQKCLRQGMLKEGVRLDRVRGGRQ 183
Query: 124 --RLPSKPKSPQE------------SPPSPPVSLITALYR-EPNPLE----PPIAEPEK- 163
R + P +P + S + L+ AL EP+ L+ P E ++
Sbjct: 184 KYRRSTDPYTPIKNATLEADVVSAGSTETINNKLVEALAACEPDILQVTNAPSTQEADQR 243
Query: 164 -IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ Q L + I +A +IPGF++L DQ L Q+ E+
Sbjct: 244 TLAQLSDLYDRELVSIIGWAKQIPGFTNLALNDQMRLLQTTWAEVL 289
>gi|228480295|ref|NP_001153203.1| retinoic acid receptor RXR-gamma isoform 2 [Mus musculus]
gi|386369|gb|AAB27245.1| retinoid-X receptor-gamma isoform 2 [Mus sp.]
Length = 340
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 136/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 14 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 73
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + S PV I LE +A
Sbjct: 74 QKCLVMGMKREAVQEERQRSRE-RAESEAECASSSHEDMPVERI---------LEAELAV 123
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 124 EPKTESYGDMNVENSTNDPVTNICHAADK------------------------------- 152
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 153 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 193
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 194 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 253
>gi|4405799|gb|AAD19828.1| ecdysone receptor [Locusta migratoria]
Length = 541
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 149/341 (43%), Gaps = 54/341 (15%)
Query: 18 APLSSAS--SSPGCDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQ 72
+PLSS + S+ CD + +P Q LC VCGD A+ HY TCEGCKGFF+R++
Sbjct: 150 SPLSSLNGYSADSCDAKKKKGAAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSIT 209
Query: 73 KGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGR 124
K + Y C C +D R +CQ CR +KCL VGM E V+ K ++ +
Sbjct: 210 KNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEKKAQKDK 269
Query: 125 LPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 184
KP S SP V ++ + + P E P++
Sbjct: 270 --DKPNSTTNG--SPEVMMLKDIDAKVEP-ERPLSN------------------------ 300
Query: 185 IPGFSDLCKEDQELLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTT 234
G + E +EL+ + + Y P+ P E + + +
Sbjct: 301 --GIKPVSPEQEELIHRLVYFQNEYESPSEEDLRRVTSQPTEGEDQSDVRFRHITEITIL 358
Query: 235 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEK 294
+V +I FA ++PGF L +EDQ L ++ S E+ + R+A R ++F N K
Sbjct: 359 TVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVNSDSILFANNQPYTK 418
Query: 295 QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + + +L FC+ ++ M++D + +A L A+ +
Sbjct: 419 DSYNLAGMGETIEDMLRFCRQMYAMKVDNAEYALLTAIVIF 459
>gi|403289928|ref|XP_003936090.1| PREDICTED: retinoic acid receptor beta [Saimiri boliviensis
boliviensis]
Length = 448
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 130/293 (44%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K + K S QE S Y L+ +
Sbjct: 141 CFEVGMSKESVRNDRNKKK------KETSKQECTES---------YEMTAELDDLTEKIR 185
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + SA + L+ + +
Sbjct: 186 KAHQ-------------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|282165797|ref|NP_001107766.2| ultraspiracle nuclear receptor [Tribolium castaneum]
gi|270008201|gb|EFA04649.1| ultraspiracle, partial [Tribolium castaneum]
Length = 407
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 144/325 (44%), Gaps = 63/325 (19%)
Query: 16 HSAPLSSASSSPGCDTSRPTPPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
H LS + ++P ++ P PP+ LC++CGD A+ +HYGV +CEGCKGFFKRT
Sbjct: 54 HGTLLSPSGNTPNKSSTSPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 113
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
V+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ + R R +
Sbjct: 114 VRKDLSYACREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEE-----RQRTKDRDT 168
Query: 131 SPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 190
S ES T+ + PLE I ++++ L+ V+ + I
Sbjct: 169 SEVES---------TSNLQADMPLERIIEAEKRVECNDPLVALVVNENNTTVNNI----- 214
Query: 191 LCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 250
C+ + LFQ + +A +P F+
Sbjct: 215 -CQATHKQLFQ-------------------------------------LVQWAKLVPHFT 236
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR-SFGDDWLNAI 309
L DQ L ++ EL + ++R+ ++ G+ + K G+ + +
Sbjct: 237 SLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGNIYDRVL 296
Query: 310 LEFCQSLHLMEIDISAFACLCALTL 334
E + M++D + CL A+ L
Sbjct: 297 SELVNKMKEMKMDKTELGCLRAIIL 321
>gi|238859643|ref|NP_001155023.1| retinoic acid receptor RXR-alpha-A [Danio rerio]
Length = 458
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 156/341 (45%), Gaps = 69/341 (20%)
Query: 9 SESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQH 54
S SP+L ++P++S SSS G + P PS +CA+CGD ++ +H
Sbjct: 85 SISPQL--NSPMNSVSSSEDIKPPLGLNGVMKVPAQPSGTPLSLTKHICAICGDRSSGKH 142
Query: 55 YGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVR 114
YGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+
Sbjct: 143 YGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREAVQ 202
Query: 115 TDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTS 174
+ R R + ++ ES T+ E P+E I E E L
Sbjct: 203 EE-----RQRAKERSENEVES---------TSSANEDMPVEK-ILEAE--------LAVE 239
Query: 175 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTT 234
+ +P S+ + + Q+A +LF
Sbjct: 240 PKTETYIETNVPMPSNSPNDPVTNICQAADKQLF-------------------------- 273
Query: 235 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEK 294
+ +A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + +
Sbjct: 274 ---TLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHR 330
Query: 295 QQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ G + + E + M++D + CL A+ L
Sbjct: 331 NSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 371
>gi|393191891|gb|AFN06393.1| ecdysone receptor [Polyrhachis vicina]
Length = 578
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 151/329 (45%), Gaps = 38/329 (11%)
Query: 29 CDTSR---PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKAC 85
CD + PTP +LC VCGD A+ HY TCEGCKGFF+R++ + + Y C +C
Sbjct: 182 CDGKKRKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITRNAVYQCKYGNSC 241
Query: 86 PVDKRRRNRCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGRLPSKPKSPQESPP 137
+D R +CQ CR +KCL VGM E V+ K ++ + + SP
Sbjct: 242 EIDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEKKAQKEKDKPNSTTMNGSPG 301
Query: 138 SPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLT--TSVDVIRHFADKIPGFSDLCKED 195
S + ++ +EP AE + +LT + VI+ + E
Sbjct: 302 SAGMGEQMSV-----KMEPAEAESLSMSGSSGILTPVSPYSVIK----------PVSPEQ 346
Query: 196 QELLFQSASLELFYREPN----------PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 245
+EL+ + S + + +P+ P+E + + +V +I F+ +
Sbjct: 347 EELINRLVSFQCEFEQPSEEDLKRITNQPMEGEDPSDYSFRHITEITILTVRLIVEFSKR 406
Query: 246 IPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDW 305
+PGF++L +EDQ L ++ S E+ +LR+A + +IF N + + +
Sbjct: 407 LPGFNELMREDQITLLKACSSEVMMLRMARKYDVNTDSIIFANNQPYTRDSYNVAGMGET 466
Query: 306 LNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +L FC+ ++ M ++ + +A L A+ +
Sbjct: 467 IEDLLRFCRQMYAMRVNNAEYALLTAIVI 495
>gi|380800389|gb|AFE72070.1| retinoic acid receptor beta isoform 1, partial [Macaca mulatta]
Length = 433
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 130/293 (44%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 66 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 125
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K + K S QE S Y L+ +
Sbjct: 126 CFEVGMSKESVRNDRNKKK------KETSKQECTES---------YEMTAELDDLTEKIR 170
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + SA + L+ + +
Sbjct: 171 KAHQ-------------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 204
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 205 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 260
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 261 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 313
>gi|355566560|gb|EHH22939.1| hypothetical protein EGK_06297 [Macaca mulatta]
Length = 453
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 149/312 (47%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D
Sbjct: 90 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMD 149
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + +SL +
Sbjct: 150 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHAISLPPRVS 203
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P L P PE++ L+ R FSD +
Sbjct: 204 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNRR------SFSDRLRVT------------- 242
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 243 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 299
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 300 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 359
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 360 AEFALLIAISIF 371
>gi|158257496|dbj|BAF84721.1| unnamed protein product [Homo sapiens]
Length = 448
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 130/293 (44%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K + K S QE S Y L+ +
Sbjct: 141 CFEVGMSKESVRNDRNKKK------KETSKQECTES---------YEMTAELDDLTEKIR 185
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + SA + L+ + +
Sbjct: 186 KAHQ-------------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|296229938|ref|XP_002760488.1| PREDICTED: retinoic acid receptor RXR-gamma [Callithrix jacchus]
Length = 463
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECASNGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 247 EPKTESYGDMNMENSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 376
>gi|14916494|ref|NP_000956.2| retinoic acid receptor beta isoform 1 [Homo sapiens]
gi|114585741|ref|XP_001164404.1| PREDICTED: retinoic acid receptor beta isoform 4 [Pan troglodytes]
gi|395734071|ref|XP_002814046.2| PREDICTED: retinoic acid receptor beta isoform 1 [Pongo abelii]
gi|397511696|ref|XP_003826204.1| PREDICTED: retinoic acid receptor beta [Pan paniscus]
gi|402861717|ref|XP_003895230.1| PREDICTED: retinoic acid receptor beta [Papio anubis]
gi|426339742|ref|XP_004033801.1| PREDICTED: retinoic acid receptor beta isoform 1 [Gorilla gorilla
gorilla]
gi|38173846|gb|AAH60794.1| Retinoic acid receptor, beta [Homo sapiens]
gi|119584758|gb|EAW64354.1| retinoic acid receptor, beta, isoform CRA_a [Homo sapiens]
gi|307685775|dbj|BAJ20818.1| retinoic acid receptor, beta [synthetic construct]
gi|325495539|gb|ADZ17375.1| retinoic acid receptor beta variant 1 [Homo sapiens]
gi|410220772|gb|JAA07605.1| retinoic acid receptor, beta [Pan troglodytes]
Length = 448
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 130/293 (44%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K + K S QE S Y L+ +
Sbjct: 141 CFEVGMSKESVRNDRNKKK------KETSKQECTES---------YEMTAELDDLTEKIR 185
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + SA + L+ + +
Sbjct: 186 KAHQ-------------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|149755798|ref|XP_001492700.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Equus caballus]
Length = 539
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECASSGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 247 EPKTESYGDMNMENSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 376
>gi|301756739|ref|XP_002914218.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Ailuropoda
melanoleuca]
Length = 463
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 135/301 (44%), Gaps = 66/301 (21%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECASSGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 247 EPKTESYGDMNMENSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 376
Query: 335 I 335
Sbjct: 377 F 377
>gi|74006096|ref|XP_536146.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 1 [Canis lupus
familiaris]
Length = 463
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 133/300 (44%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEADCANSGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSL-----LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + V I H ADK
Sbjct: 247 EPKTESYGDMNLENSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 376
>gi|296218037|ref|XP_002755271.1| PREDICTED: oxysterols receptor LXR-alpha isoform 1 [Callithrix
jacchus]
Length = 448
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 148/312 (47%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D
Sbjct: 85 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMD 144
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 145 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSLPLRAS 198
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P L P PE++ L+T R FSD +
Sbjct: 199 SPPQIL--PQLSPEQLGMIEKLVTAQQQCNRR------SFSDQLRVT------------- 237
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 238 ---PWPMAPDPHSWEARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 294
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 295 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 354
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 355 AEFALLIAISIF 366
>gi|432859604|ref|XP_004069176.1| PREDICTED: retinoic acid receptor gamma-A isoform 2 [Oryzias
latipes]
Length = 493
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 131/293 (44%), Gaps = 44/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 85 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQK 144
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K K K +E P Y LE + +
Sbjct: 145 CFEVGMSKEAVRNDRNK--------KKKDVKEEITLPES------YELSGELEELVNKVS 190
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K + F LC+ + SA + L+ + +
Sbjct: 191 KAHK-------------------ETFPSLCQLGKYTTNSSAEHRV------QLDLGLWD- 224
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L +SA L++ +LR+ R E
Sbjct: 225 ----KFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQD 280
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 281 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 333
>gi|70907499|emb|CAH69897.1| retinoid X receptor [Blattella germanica]
Length = 413
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 139/308 (45%), Gaps = 67/308 (21%)
Query: 34 PTPPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
P PP+ LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C DK C +D
Sbjct: 81 PYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIID 140
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
KR+RNRCQ+CR+QKCL +GM +E V+ + R R + ++ ES S +
Sbjct: 141 KRQRNRCQYCRYQKCLSMGMKREAVQEE-----RQRTKERDQNEVESTSSLHTDM----- 190
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P+E + ++++ CK +Q++ F+SA +
Sbjct: 191 ----PVERILEAEKRVE--------------------------CKSEQQVEFESAVTNIC 220
Query: 209 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 268
+Q + L+ +A IP F+ L DQ LL ++ EL
Sbjct: 221 QATN-------------KQLFQLV--------EWAKHIPHFTTLPLSDQVLLLRAGWNEL 259
Query: 269 FVLRLAYRTRAEDTKLIFCNGVVLEKQQC-QRSFGDDWLNAILEFCQSLHLMEIDISAFA 327
+ ++R+ ++ G+ + + Q G + + E + M++D +
Sbjct: 260 LIAAFSHRSVEVKDGIVLATGLTVHRNSAHQAGVGAIFDRVLTELVAKMREMKMDKTELG 319
Query: 328 CLCALTLI 335
CL ++ L
Sbjct: 320 CLRSVILF 327
>gi|194388386|dbj|BAG65577.1| unnamed protein product [Homo sapiens]
Length = 522
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 136/297 (45%), Gaps = 25/297 (8%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 109 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 168
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D R GR+ + + V + R N P+
Sbjct: 169 LRKCYEVGMMKGGIRKDR---RGGRMLKHKRQRDDGEGRGEVGSAGDM-RAANLWPSPLM 224
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+ +L T+ ++ D P + Y E +P P
Sbjct: 225 IKRSKKNSLALSLTADQMVSALLDAEP-------------------PILYSEYDPTRP-F 264
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+E + +L + + ++A ++PGF DL Q L + A LE+ ++ L +R+
Sbjct: 265 SEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHGQVHLLECAWLEILMIGLVWRSME 324
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 325 HPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 381
>gi|61657903|ref|NP_113953.1| retinoic acid receptor RXR-gamma [Rattus norvegicus]
gi|81888393|sp|Q5BJR8.1|RXRG_RAT RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|60551535|gb|AAH91363.1| Retinoid X receptor gamma [Rattus norvegicus]
gi|149058122|gb|EDM09279.1| retinoid X receptor gamma, isoform CRA_a [Rattus norvegicus]
Length = 463
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 134/300 (44%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECASTGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + S V I H ADK
Sbjct: 247 EPKTESYGDMSVESSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M +D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMRMDKSELGCLRAIVL 376
>gi|170053275|ref|XP_001862599.1| estrogen-related receptor [Culex quinquefasciatus]
gi|167873854|gb|EDS37237.1| estrogen-related receptor [Culex quinquefasciatus]
Length = 446
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 145/321 (45%), Gaps = 23/321 (7%)
Query: 21 SSASSSPGCDTSRPTPPS---PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKY 77
+SA G D++ P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y
Sbjct: 57 TSAIGDFGSDSTNQDAIKEEIPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEY 116
Query: 78 VCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPP 137
C A C ++KRRR CQ CRF+KCL +GM+KE VR D ++G R + + +P
Sbjct: 117 TCPASNDCEINKRRRKACQACRFRKCLLMGMLKEGVRLDRVRGGR-------QKYRRNPC 169
Query: 138 SPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 197
+ P L L + + E KI + S I H D + G D++
Sbjct: 170 TNPYQL--QLTQSNSQYTAQSLEDIKILEVLSSFEPDPLTIGHGFDLMNGGGSDHDGDKQ 227
Query: 198 LLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDV----IRHFADKIPGFSDLC 253
+ +A Q+ S+L+ D + +A +IPGF+DL
Sbjct: 228 T-------NSDSSATSSSRATMAIGADAQEMLSVLSDIYDKELVGVIGWAKQIPGFTDLP 280
Query: 254 KEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFC 313
DQ L Q + EL L LA+R+ +L F L+++ + D N + +
Sbjct: 281 LNDQMRLLQVSWAELLTLMLAHRSIPFSGRLYFATDFWLDERSAKECGALDLYNHLAQIT 340
Query: 314 QSLHLMEIDISAFACLCALTL 334
Q L + + L AL+L
Sbjct: 341 QRLEKVSATKEEYYLLKALSL 361
>gi|357610701|gb|EHJ67103.1| putative retinoid X receptor [Danaus plexippus]
Length = 427
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 100/183 (54%), Gaps = 14/183 (7%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C ++KRRR CQ
Sbjct: 95 APRRLCLVCGDIASGFHYGVASCEACKAFFKRTIQGNIEYTCPAANECEINKRRRKACQA 154
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRG--RLPSKPKSPQESPPSPPVSLITALYR-EPNPL 154
CRF+KCL+ GM++E VR D ++G R R + Q P + ++ AL EP L
Sbjct: 155 CRFRKCLRTGMLREGVRLDRVRGGRQKYRRGEHAATGQHRPALDDIKVLEALTSYEPELL 214
Query: 155 E-----PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASL 205
P + EP + +LL D + +A +IPGF+DL DQ L QS
Sbjct: 215 SCGSVPPGVTEPNS--RTLALLADIYDRELVGVIGWAKQIPGFTDLALNDQMRLLQSTWA 272
Query: 206 ELF 208
E+
Sbjct: 273 EML 275
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT--KLIFCNGVVLEKQQCQ 298
+A +IPGF+DL DQ L QS E+ L +AYR+ + +L F + L++QQ +
Sbjct: 248 WAKQIPGFTDLALNDQMRLLQSTWAEMLSLMVAYRSMSAGGALRLRFAADLALDEQQAR 306
>gi|149725076|ref|XP_001490947.1| PREDICTED: oxysterols receptor LXR-alpha-like isoform 1 [Equus
caballus]
Length = 447
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 153/325 (47%), Gaps = 38/325 (11%)
Query: 18 APLSSASSSPGCDTSRPTPPS-PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSK 76
AP S P P P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++
Sbjct: 72 APPESTEPRPQKRKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAR 131
Query: 77 YVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESP 136
Y+C + CP+D R +CQ CR +KC Q GM +E V ++ + R +L + + ++
Sbjct: 132 YICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEE-QIRLKKLKRQEEEQSQAT 190
Query: 137 PSPPVSLITALYREP-NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 195
PP R P +P P PE++ L+ R FSD +
Sbjct: 191 SVPP--------RVPSDPQVLPQLSPEQLGMIEKLVAAQQQCNRR------SFSDQLRVT 236
Query: 196 QELLFQSASLELFYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSD 251
P P+ P E QQ F L SV I FA ++PGF
Sbjct: 237 ----------------PWPMAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQ 280
Query: 252 LCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAIL 310
L +EDQ L +++++E+ +L + R + F ++ ++ +++N I
Sbjct: 281 LSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIF 340
Query: 311 EFCQSLHLMEIDISAFACLCALTLI 335
EF ++++ ++++ + FA L A+++
Sbjct: 341 EFSRAMNELQLNDAEFALLIAISIF 365
>gi|344281053|ref|XP_003412295.1| PREDICTED: oxysterols receptor LXR-alpha-like isoform 1 [Loxodonta
africana]
Length = 447
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 157/332 (47%), Gaps = 43/332 (12%)
Query: 17 SAPLSSASSSPGCDTSRP----TPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFK 68
+A L A SP RP P+P ++LC+VCGD A+ HY V +CEGCKGFF+
Sbjct: 64 AARLPRAKPSPESTELRPPKRKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFR 123
Query: 69 RTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSK 128
R+V KG++YVC + CP+D R +CQ CR +KC Q GM +E V L + RL
Sbjct: 124 RSVIKGARYVCHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECV----LSEEQIRLKKL 179
Query: 129 PKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGF 188
+ +E + VS + P + P ++ PE++ L+ R F
Sbjct: 180 KRQEEEQAQTTSVSPRAS---SPTQVLPQLS-PEQLGMIEKLVAAQQQCNRR------SF 229
Query: 189 SDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFAD 244
SD + P P+ P E QQ F L SV I FA
Sbjct: 230 SDRLRVT----------------PWPMAPDPQSREARQQRFAHFTELAIVSVQEIVDFAK 273
Query: 245 KIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGD 303
++PGF L +EDQ L +++++E+ +L + R + F ++ ++
Sbjct: 274 QLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQV 333
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+++N I EF ++++ ++++ + FA L A+++
Sbjct: 334 EFINPIFEFSRAMNELQLNDAEFALLIAISIF 365
>gi|383872390|ref|NP_001244539.1| retinoic acid receptor RXR-gamma [Macaca mulatta]
gi|355558991|gb|EHH15771.1| hypothetical protein EGK_01907 [Macaca mulatta]
gi|355746155|gb|EHH50780.1| hypothetical protein EGM_01657 [Macaca fascicularis]
gi|380815424|gb|AFE79586.1| retinoic acid receptor RXR-gamma isoform a [Macaca mulatta]
Length = 463
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECASSGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 247 EPKTESYGDMNMENSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 376
>gi|197101785|ref|NP_001124824.1| retinoic acid receptor RXR-gamma [Pongo abelii]
gi|402858038|ref|XP_003893537.1| PREDICTED: retinoic acid receptor RXR-gamma [Papio anubis]
gi|75062013|sp|Q5REL6.1|RXRG_PONAB RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|55726030|emb|CAH89791.1| hypothetical protein [Pongo abelii]
Length = 463
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECASSGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 247 EPKTESYGDMNMENSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 376
>gi|24308535|ref|NP_571471.1| thyroid hormone receptor alpha-A [Danio rerio]
gi|6094469|sp|Q98867.1|THAA_DANRE RecName: Full=Thyroid hormone receptor alpha-A; Short=zTRalpha-A;
AltName: Full=Nuclear receptor subfamily 1 group A
member 1-A; AltName: Full=Thyroid hormone receptor
alpha-1; Short=TRalpha-1
gi|1314773|gb|AAA99811.1| thyroid hormone receptor alpha 1 [Danio rerio]
gi|66911171|gb|AAH96778.1| Thyroid hormone receptor alpha a [Danio rerio]
gi|182889166|gb|AAI64729.1| Thraa protein [Danio rerio]
Length = 427
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 141/296 (47%), Gaps = 27/296 (9%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG--SKYVCLADKACPVDKRRRNRCQFCRF 100
C VCGD A HY TCEGCKGFF+RT+QK Y C D C +DK RN+CQ CRF
Sbjct: 57 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDSCCIIDKITRNQCQLCRF 116
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++V DS + + RL + + ++ ++ L+ P EP ++E
Sbjct: 117 RKCISVGMAMDLVLDDSKRVAKRRLIEENREKRKKE-----EIVKTLHNRP---EPTVSE 168
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL-EPPI 219
+ L+ + RH + P + K E + QS P P +
Sbjct: 169 -------WELIRMVTEAHRHTNAQGPHWKQKRKFLPEDIGQS---------PAPTSDNDK 212
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+ E +F ++T ++ + FA K+P FS+L EDQ +L + +E+ LR A R
Sbjct: 213 VDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDP 272
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
E L + + ++Q + +AI + +SL +D S A L A+ L+
Sbjct: 273 ESETLTLSGEMAVSREQLKNGGLGVVSDAIFDLGKSLSQFNLDDSEVALLQAVLLM 328
>gi|410926883|ref|XP_003976898.1| PREDICTED: estrogen-related receptor gamma-like [Takifugu rubripes]
Length = 431
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 102/184 (55%), Gaps = 13/184 (7%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
P ++C VCG++A+ HYGV +CE CK FFKRT+Q +Y+C + C + KRRR CQ
Sbjct: 100 GPKRVCLVCGELASGYHYGVASCEACKAFFKRTMQGNIEYICPVNNNCEITKRRRKACQA 159
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRG--RLPSKPKSPQESP-----PSPPVSLITALYRE 150
CRFQKCLQ GM++E VR D ++G R R ++P P + P S V + L E
Sbjct: 160 CRFQKCLQAGMMREGVRIDRVRGGRQKYRRRTEPGRPYKGPCLHSASSRNVVISDLLLIE 219
Query: 151 PNPLEPPIAEPEKIQQFYSLLT------TSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 204
P P+ + EP +LLT + ++ +A +IPGF +L DQ L QS
Sbjct: 220 PPPMAANLQEPANEGGLCNLLTLCDLLNRQLLLLIGWAKQIPGFLNLSLVDQMSLLQSGW 279
Query: 205 LELF 208
+E+
Sbjct: 280 MEVL 283
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 206 ELFYREPNPLEPPIAEPEKIQQFYSLLT------TSVDVIRHFADKIPGFSDLCKEDQEL 259
+L EP P+ + EP +LLT + ++ +A +IPGF +L DQ
Sbjct: 214 DLLLIEPPPMAANLQEPANEGGLCNLLTLCDLLNRQLLLLIGWAKQIPGFLNLSLVDQMS 273
Query: 260 LFQSASLELFVLRLAYRT-RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHL 318
L QS +E+ ++ +A+R+ + +L+F + L QC G L+ + E +LHL
Sbjct: 274 LLQSGWMEVLLVGVAWRSQKTGGEELVFAANLQLTGAQC----GAMGLSHLYE---ALHL 326
Query: 319 MEI 321
+ +
Sbjct: 327 LSL 329
>gi|426332559|ref|XP_004027871.1| PREDICTED: retinoic acid receptor RXR-gamma [Gorilla gorilla
gorilla]
Length = 463
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECATSGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 247 EPKTESYGDMNMENSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 376
>gi|432859602|ref|XP_004069175.1| PREDICTED: retinoic acid receptor gamma-A isoform 1 [Oryzias
latipes]
Length = 485
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 131/293 (44%), Gaps = 44/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 77 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQK 136
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K K K +E P Y LE + +
Sbjct: 137 CFEVGMSKEAVRNDRNK--------KKKDVKEEITLPES------YELSGELEELVNKVS 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K + F LC+ + SA + L+ + +
Sbjct: 183 KAHK-------------------ETFPSLCQLGKYTTNSSAEHRV------QLDLGLWD- 216
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L +SA L++ +LR+ R E
Sbjct: 217 ----KFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQD 272
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 273 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 325
>gi|226823248|ref|NP_001152829.1| ecdysone receptor isoform B1 [Nasonia vitripennis]
Length = 524
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 153/326 (46%), Gaps = 18/326 (5%)
Query: 22 SASSSPGCDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV 78
+ S+ CD + P+P Q LC VCGD A+ HY TCEGCKGFF+R++ K + Y
Sbjct: 121 NGYSADSCDAKKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQ 180
Query: 79 CLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPS 138
C C +D R +CQ CR +KCL VGM E V + R K + ++ P S
Sbjct: 181 CKYGNNCEIDMYMRRKCQECRLKKCLHVGMRPECV-VPEFQCAVKRKEKKAQKEKDKPNS 239
Query: 139 PPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQEL 198
++ + P EP ++ S + +V I + G + + E +EL
Sbjct: 240 TTMNGGSPGGIGPAEQMGVKMEPAEVDYSMSGNSGTVASI----GSLNGLNYVSPEQEEL 295
Query: 199 LFQSASLELFYREPNP-----LEPPIAEPE-----KIQQFYSLLTTSVDVIRHFADKIPG 248
+ + + Y +PN + E E + + + +V +I FA ++PG
Sbjct: 296 INRLVYFQDEYEQPNEEDVRRITNQSTENEDPSDVRFRHITEITILTVQLIVEFAKRLPG 355
Query: 249 FSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNA 308
F +L ED+ +L ++ S E+ +LR+A + + +IF N + + + ++
Sbjct: 356 FDELRHEDKIVLLKACSSEVMILRMARKYDYQTDSIIFANNQPYSRDSYTLAGIGNIIDD 415
Query: 309 ILEFCQSLHLMEIDISAFACLCALTL 334
+L F + ++ M+++ + +A L A+ +
Sbjct: 416 LLHFGRLMYSMKVNNAEYALLTAIVM 441
>gi|432090400|gb|ELK23826.1| Oxysterols receptor LXR-alpha [Myotis davidii]
Length = 447
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 152/313 (48%), Gaps = 41/313 (13%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++Y+C + CP+D
Sbjct: 84 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYLCHSGGHCPMD 143
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ + R +L + + ++ PP
Sbjct: 144 TYMRRKCQECRLRKCRQAGMREECVLSEE-QIRLKKLKRQEEEQAQATSVPP-------- 194
Query: 149 REPNPLEP-PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
R +P + P PE++ L+ R FSD +
Sbjct: 195 RASSPPQVLPQLSPEQLGMIEKLVAAQQQCNRR------SFSDQLRVT------------ 236
Query: 208 FYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 263
P P+ P E QQ F L SV I FA ++PGF L +EDQ L ++
Sbjct: 237 ----PWPMAPDPQSWEARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKT 292
Query: 264 ASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEID 322
+++E+ +L + R E + F ++ ++ +++N I EF ++++ ++++
Sbjct: 293 STIEVMLLETSRRYNPESESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLN 352
Query: 323 ISAFACLCALTLI 335
+ FA L A+++
Sbjct: 353 DAEFALLIAISIF 365
>gi|156120132|ref|NP_001095284.1| oxysterols receptor LXR-alpha [Sus scrofa]
gi|66220403|gb|AAY43056.1| nuclear orphan receptor LXR-alpha [Sus scrofa]
gi|145860190|dbj|BAF57045.1| liver X receptor alpha [Sus scrofa]
Length = 447
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 158/333 (47%), Gaps = 45/333 (13%)
Query: 17 SAPLSSASSSPGCDTSRPTP----PSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFK 68
+A L +SP RP P+P ++LC+VCGD A+ HY V +CEGCKGFF+
Sbjct: 64 TALLPGVEASPESTELRPQKRKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFR 123
Query: 69 RTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSK 128
R+V KG++YVC + CP+D R +CQ CR +KC Q GM +E V ++ + R +L +
Sbjct: 124 RSVIKGARYVCHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEE-QIRLKKLKRQ 182
Query: 129 PKSPQESPPSPPVSLITALYREPNPLEP-PIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 187
+ ++ PP R +P + P PE++ L+ R
Sbjct: 183 EEEQAQATSVPP--------RASSPPQVLPQLSPEQLGMIEKLVAAQQQCNRR------S 228
Query: 188 FSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFA 243
FSD + P P+ P E QQ F L SV I FA
Sbjct: 229 FSDQLRVT----------------PWPMAPDPQSREARQQRFAHFTELAIVSVQEIVDFA 272
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FG 302
++PGF L +EDQ L +++++E+ +L + R + F ++ ++
Sbjct: 273 KQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQ 332
Query: 303 DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+++N I EF ++++ ++++ + FA L A+++
Sbjct: 333 VEFINPIFEFSRAMNELQLNDAEFALLIAISIF 365
>gi|5902068|ref|NP_008848.1| retinoic acid receptor RXR-gamma isoform a [Homo sapiens]
gi|114561087|ref|XP_513962.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 2 [Pan
troglodytes]
gi|397508368|ref|XP_003824630.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan paniscus]
gi|1350913|sp|P48443.1|RXRG_HUMAN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|1053069|gb|AAA80681.1| retinoid X receptor-gamma [Homo sapiens]
gi|15082315|gb|AAH12063.1| Retinoid X receptor, gamma [Homo sapiens]
gi|48145527|emb|CAG32986.1| RXRG [Homo sapiens]
gi|119611151|gb|EAW90745.1| retinoid X receptor, gamma [Homo sapiens]
gi|190689913|gb|ACE86731.1| retinoid X receptor, gamma protein [synthetic construct]
gi|190691285|gb|ACE87417.1| retinoid X receptor, gamma protein [synthetic construct]
gi|261858858|dbj|BAI45951.1| retinoid X receptor, gamma [synthetic construct]
gi|325495501|gb|ADZ17356.1| retinoid X nuclear receptor gamma variant 1 [Homo sapiens]
gi|326205168|dbj|BAJ83970.1| retinoic acid receptor RXR-gamma [Homo sapiens]
Length = 463
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECATSGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 247 EPKTESYGDMNMENSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 376
>gi|145688458|gb|ABP88970.1| liver X receptor alpha [Sus scrofa]
Length = 447
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 158/333 (47%), Gaps = 45/333 (13%)
Query: 17 SAPLSSASSSPGCDTSRPTP----PSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFK 68
+A L +SP RP P+P ++LC+VCGD A+ HY V +CEGCKGFF+
Sbjct: 64 TALLPGVEASPESTELRPQKRKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFR 123
Query: 69 RTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSK 128
R+V KG++YVC + CP+D R +CQ CR +KC Q GM +E V ++ + R +L +
Sbjct: 124 RSVIKGARYVCHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEE-QIRLKKLKRQ 182
Query: 129 PKSPQESPPSPPVSLITALYREPNPLEP-PIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 187
+ ++ PP R +P + P PE++ L+ R
Sbjct: 183 EEEQAQATSVPP--------RASSPPQVLPQLSPEQLGMIEKLVAAQQQCNRR------S 228
Query: 188 FSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFA 243
FSD + P P+ P E QQ F L SV I FA
Sbjct: 229 FSDQLRVT----------------PWPMAPDPQSREARQQRFAHFTELAIVSVQEIVDFA 272
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FG 302
++PGF L +EDQ L +++++E+ +L + R + F ++ ++
Sbjct: 273 KQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQ 332
Query: 303 DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+++N I EF ++++ ++++ + FA L A+++
Sbjct: 333 VEFINPIFEFSRAMNELQLNDAEFALLIAISIF 365
>gi|66864094|dbj|BAD99298.1| ultraspiracle [Leptinotarsa decemlineata]
Length = 384
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 107/204 (52%), Gaps = 14/204 (6%)
Query: 14 LRHSAPLSSASSSPGCDTSRPTPPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFK 68
L H+ LS + P + P PP+ LC++CGD A+ +HYGV +CEGCKGFFK
Sbjct: 34 LGHANLLSPSPGGPKGVPNSPYPPNHPLSGSKHLCSICGDKASGKHYGVYSCEGCKGFFK 93
Query: 69 RTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSK 128
RTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ + R R +
Sbjct: 94 RTVRKDLSYACREEKNCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEE-----RQRTKDR 148
Query: 129 PKSPQESPPSPPVSL-ITALYREPNPLE---PPIAEPEKIQQFYSLLTTSVDVIRHFADK 184
S ES S P + I L +E PP+A + + + +A
Sbjct: 149 DASEVESTSSNPNEMSIERLLEAEKRVECNDPPVALENAVTNICQATNKQLLQLVEWAKL 208
Query: 185 IPGFSDLCKEDQELLFQSASLELF 208
IP F+ L DQ LL ++ EL
Sbjct: 209 IPHFTSLPVSDQVLLLRAGWNELL 232
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
+PP+A + + + +A IP F+ L DQ LL ++ EL + ++
Sbjct: 179 DPPVALENAVTNICQATNKQLLQLVEWAKLIPHFTSLPVSDQVLLLRAGWNELLIASFSH 238
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQR-SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ +I G+ + K Q G+ + + E + M +D + CL A+ L
Sbjct: 239 RSMQTQEGIILATGLTINKSTAQAVGVGNIYDRVLSELVNKMKEMRMDKTELGCLRAIIL 298
>gi|395815655|ref|XP_003781340.1| PREDICTED: oxysterols receptor LXR-alpha [Otolemur garnettii]
Length = 437
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 150/312 (48%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++Y+C + CP+D
Sbjct: 74 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYICHSGGHCPMD 133
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CRF+KC Q GM +E V ++ + R +L + + ++ PP +
Sbjct: 134 TYMRRKCQECRFRKCRQAGMREECVLSEE-QIRLKKLKRQEEEQTQATSLPPRA------ 186
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P P PE++ L+ R FSD +
Sbjct: 187 -SSPPQVLPQLSPEQLDMIEKLVAAQQQCNRR------SFSDQLRVT------------- 226
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 227 ---PWPMAPDPQSREARQQRFAHFTELAIISVQEIVDFAKQLPGFLQLSREDQIALLKTS 283
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 284 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 343
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 344 AEFALLIAISIF 355
>gi|146760616|gb|ABQ44496.1| retinoic acid receptor gamma 2 [Oryzias latipes]
Length = 332
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 131/293 (44%), Gaps = 44/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 28 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQK 87
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K K K +E P Y LE + +
Sbjct: 88 CFEVGMSKEAVRNDRNK--------KKKDVKEEITLPES------YELSGELEELVNKVS 133
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K + F LC+ + SA + L+ + +
Sbjct: 134 KAHK-------------------ETFPSLCQLGKYTTNSSAEHRV------QLDLGLWD- 167
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L +SA L++ +LR+ R E
Sbjct: 168 ----KFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQD 223
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 224 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 276
>gi|216409720|dbj|BAH02297.1| retinoid X receptor-gamma [Homo sapiens]
Length = 463
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECATSGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 247 EPKTESYGDMNMENSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 376
>gi|189442267|gb|AAI67563.1| Rara2a protein [Xenopus laevis]
Length = 457
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 130/298 (43%), Gaps = 55/298 (18%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 86 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 145
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K ++ EPP +
Sbjct: 146 CFEVGMSKESVRNDRNKKKK--------------------------------EPPKVD-- 171
Query: 163 KIQQFYSLLTTSVDVI----RHFADKIPGFSDLCKEDQELLFQS-ASLELFYREPNPLEP 217
+ + Y L + D+I + + P L K + SL++
Sbjct: 172 -VMESYVLSPETQDLIEKVRKAHKETFPALCQLGKYTTNFSSEERVSLDI---------- 220
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
+ +F L T + FA ++PGF+ L DQ L +SA L++ +LR+ R
Sbjct: 221 -----DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKSACLDILILRICTRY 275
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 333
>gi|1046295|gb|AAC59720.1| retinoid X receptor alpha [Danio rerio]
gi|1583308|prf||2120366C retinoid X receptor:ISOTYPE=alpha
Length = 441
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 140/297 (47%), Gaps = 58/297 (19%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 115 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRY 174
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA- 159
QKCL +GM +E V+ + +GR R ++ S PV I L+ +A
Sbjct: 175 QKCLAMGMKREAVQEERQRGRE-RSDNEVDSSSSFNEEMPVEKI---------LDAELAV 224
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
EP+ S ++ S + D + +++C Q+A +LF
Sbjct: 225 EPKTEAYMESSMSNSTN------DPV---TNIC--------QAADKQLF----------- 256
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+ +A +IP FSDL +DQ +L ++ EL + ++R+
Sbjct: 257 ------------------TLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVT 298
Query: 280 EDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
++ G+ + + + G + + E + M++D + CL A+ L
Sbjct: 299 VKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF 355
>gi|167016572|sp|Q0GFF6.2|RXRG_PIG RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 463
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECASSGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 247 EPKTESYGDMNMENSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 376
>gi|226823246|ref|NP_001152828.1| ecdysone receptor isoform A [Nasonia vitripennis]
Length = 577
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 153/326 (46%), Gaps = 18/326 (5%)
Query: 22 SASSSPGCDTSRPTPPSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV 78
+ S+ CD + P+P Q LC VCGD A+ HY TCEGCKGFF+R++ K + Y
Sbjct: 174 NGYSADSCDAKKKKGPTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQ 233
Query: 79 CLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPS 138
C C +D R +CQ CR +KCL VGM E V + R K + ++ P S
Sbjct: 234 CKYGNNCEIDMYMRRKCQECRLKKCLHVGMRPECV-VPEFQCAVKRKEKKAQKEKDKPNS 292
Query: 139 PPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQEL 198
++ + P EP ++ S + +V I + G + + E +EL
Sbjct: 293 TTMNGGSPGGIGPAEQMGVKMEPAEVDYSMSGNSGTVASI----GSLNGLNYVSPEQEEL 348
Query: 199 LFQSASLELFYREPNP-----LEPPIAEPE-----KIQQFYSLLTTSVDVIRHFADKIPG 248
+ + + Y +PN + E E + + + +V +I FA ++PG
Sbjct: 349 INRLVYFQDEYEQPNEEDVRRITNQSTENEDPSDVRFRHITEITILTVQLIVEFAKRLPG 408
Query: 249 FSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNA 308
F +L ED+ +L ++ S E+ +LR+A + + +IF N + + + ++
Sbjct: 409 FDELRHEDKIVLLKACSSEVMILRMARKYDYQTDSIIFANNQPYSRDSYTLAGIGNIIDD 468
Query: 309 ILEFCQSLHLMEIDISAFACLCALTL 334
+L F + ++ M+++ + +A L A+ +
Sbjct: 469 LLHFGRLMYSMKVNNAEYALLTAIVM 494
>gi|145860188|dbj|BAF57044.1| liver X receptor alpha [Sus scrofa]
Length = 447
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 158/333 (47%), Gaps = 45/333 (13%)
Query: 17 SAPLSSASSSPGCDTSRPTP----PSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFK 68
+A L +SP RP P+P ++LC+VCGD A+ HY V +CEGCKGFF+
Sbjct: 64 TALLPGVEASPESTELRPQKRKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFR 123
Query: 69 RTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSK 128
R+V KG++YVC + CP+D R +CQ CR +KC Q GM +E V ++ + R +L +
Sbjct: 124 RSVIKGARYVCHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEE-QIRLKKLKRQ 182
Query: 129 PKSPQESPPSPPVSLITALYREPNPLEP-PIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 187
+ ++ PP R +P + P PE++ L+ R
Sbjct: 183 EEEQAQATSVPP--------RASSPPQVLPQLSPEQLGMIEKLVAAQQQCNRR------S 228
Query: 188 FSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFA 243
FSD + P P+ P E QQ F L SV I FA
Sbjct: 229 FSDQLRVT----------------PWPMAPDPQSREARQQRFAHFTELAIVSVQEIVDFA 272
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FG 302
++PGF L +EDQ L +++++E+ +L + R + F ++ ++
Sbjct: 273 KQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQ 332
Query: 303 DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+++N I EF ++++ ++++ + FA L A+++
Sbjct: 333 VEFINPIFEFSRAMNELQLNDAEFALLIAISIF 365
>gi|40886675|gb|AAR96256.1| retinoid X receptor gamma [Sus scrofa]
Length = 431
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 105 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 164
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 165 QKCLVMGMKREAVQEERQRSRE-RAESEAECASSGHEDMPVERI---------LEAELAV 214
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 215 EPKTESYGDMNMENSTNDPVTNICHAADK------------------------------- 243
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 244 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 284
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 285 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 344
>gi|283488474|gb|ADB24760.1| retinoid x receptor [Agelena silvatica]
Length = 406
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 147/326 (45%), Gaps = 82/326 (25%)
Query: 18 APLSSASSSPGCDTSRPTPPSPS--------QLCAVCGDIAACQHYGVRTCEGCKGFFKR 69
A LSS S +P P+P P+ LC++CGD A+ +HYGV +CEGCKGFFKR
Sbjct: 68 AQLSSQSQNP------PSPQYPANHPLCGSKHLCSICGDRASGKHYGVYSCEGCKGFFKR 121
Query: 70 TVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKP 129
TV+K Y C ++ C +DKR+RNRCQ+CR+QKCL +GM +E V+ + + R
Sbjct: 122 TVRKDLSYACREERNCIIDKRQRNRCQYCRYQKCLSMGMKREAVQEERQRNRE------- 174
Query: 130 KSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 189
+S E + + ++ R I E E + A K P +
Sbjct: 175 RSENEVESTSNIQGDISIDR--------ILEAE---------------LWMDAKKEPDVT 211
Query: 190 DLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGF 249
++C+ +A+ QQ Y L+ +A IP F
Sbjct: 212 NICQ-------------------------VAD----QQLYQLV--------EWAKHIPHF 234
Query: 250 SDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAI 309
+DL ED+ +L +S EL + +++ + ++ +G ++ + + + +
Sbjct: 235 NDLPLEDRTILLKSGWNELLIASFCHKSVSVKDGIVLASGTIVHRNSAHNAGVGTIFDRL 294
Query: 310 L-EFCQSLHLMEIDISAFACLCALTL 334
L E + M++D + CL A+ L
Sbjct: 295 LSELVNKMREMKMDKTELGCLKAIIL 320
>gi|41282088|ref|NP_571292.2| retinoic acid receptor RXR-gamma-A [Danio rerio]
gi|52788288|sp|Q90416.2|RXRGA_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-A;
AltName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Retinoid X receptor alpha; AltName: Full=Retinoid X
receptor gamma-A
gi|37590367|gb|AAH59576.1| Retinoid x receptor, gamma a [Danio rerio]
Length = 441
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 140/296 (47%), Gaps = 58/296 (19%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 115 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRY 174
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA- 159
QKCL +GM +E V+ + +GR R ++ S PV I L+ +A
Sbjct: 175 QKCLAMGMKREAVQEERQRGRE-RSDNEVDSSSSFNEEMPVEKI---------LDAELAV 224
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
EP+ S ++ S + D + +++C Q+A +LF
Sbjct: 225 EPKTEAYMESSMSNSTN------DPV---TNIC--------QAADKQLF----------- 256
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+ +A +IP FSDL +DQ +L ++ EL + ++R+
Sbjct: 257 ------------------TLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVT 298
Query: 280 EDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ G+ + + + G + + E + M++D + CL A+ L
Sbjct: 299 VKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 354
>gi|187856988|dbj|BAG31994.1| gonad estrogen receptor alpha1 [Xenopus laevis]
Length = 466
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 157/332 (47%), Gaps = 35/332 (10%)
Query: 7 SSSESPKLRHSAPLSSASSS--PGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCK 64
SSS++ + +SSA+ P ++++ T + CAVC D A+ HYGV +CEGCK
Sbjct: 27 SSSDNRRQSGRERMSSANDKGPPSMESTKET-----RFCAVCSDYASGYHYGVWSCEGCK 81
Query: 65 GFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGR 124
FFKR++Q + Y+C A C +DK RR CQ CR +KC +VGM+K +R D GR +
Sbjct: 82 AFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRRGGRMLK 141
Query: 125 LPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 184
+ + P++ P + TA + P + K+ SL T+ +I +
Sbjct: 142 HKQQKEEPEQKNDVNPSEIRTA-----SIWVNPSVKSMKLSPVLSL--TAEQLISALMEA 194
Query: 185 IPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 244
P + Y E + +P ++E + +L + + ++A
Sbjct: 195 EP-------------------PIVYSEHDSTKP-LSEASMMTLLTNLADKELVHMINWAK 234
Query: 245 KIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG-D 303
++PGF DL DQ L + A LE+ ++ L +R+ KL F ++L++ Q + G
Sbjct: 235 RVPGFVDLTLHDQVHLLECAWLEILMVGLIWRSVEHPEKLSFAPNLLLDRNQGRCVEGLV 294
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + ++ +M + F CL ++ L+
Sbjct: 295 EIFDMLVTTATRFRMMRLHGEEFICLKSIILL 326
>gi|301614423|ref|XP_002936681.1| PREDICTED: retinoic acid receptor gamma-A-like isoform 3 [Xenopus
(Silurana) tropicalis]
Length = 442
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 131/293 (44%), Gaps = 44/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQFCR QK
Sbjct: 76 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQK 135
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C QVGM KE V + R + + K P S Y P +E I +
Sbjct: 136 CFQVGMSKEAV-----RNDRNKKKKEIKEEVVVPDS---------YEMPPEMEELIQKVS 181
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + SA + L+ + +
Sbjct: 182 KAHQ-------------------ETFPSLCQLGKYTTNSSADHRV------QLDLGLWD- 215
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L +SA L++ +LR+ R E
Sbjct: 216 ----KFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQD 271
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 272 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFADQLLPLEMDDTETGLLSAICLI 324
>gi|218156230|dbj|BAH03347.1| retinoic acid receptor 3 [Eptatretus burgeri]
Length = 375
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 128/288 (44%), Gaps = 45/288 (15%)
Query: 48 DIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVG 107
D ++ HYGV +CEGCKGFF+R++QK Y C DK C V+K RNRCQ+CR Q+CL+VG
Sbjct: 2 DKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKKCVVNKITRNRCQYCRLQRCLEVG 61
Query: 108 MVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQF 167
M KE VR D K ++ P V L+ E P A PE
Sbjct: 62 MSKESVRNDRSKKKKD--------------VPRVELV----------ELPPAPPE----- 92
Query: 168 YSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQ 227
LT+ V C+ QE L + + + + +
Sbjct: 93 LEDLTSRV----------------CRAHQETFPNLCQLGKYTMTNGSGQRVTLDADLWDK 136
Query: 228 FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFC 287
F L T + FA +IPGFS L +DQ L ++A L++ +LR+ R E + F
Sbjct: 137 FSDLSTKCIVRTVEFAKRIPGFSTLAIDDQITLLKAACLDILILRICTRYTPEHDTMTFS 196
Query: 288 NGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+G+ L + Q + + + F L + +D + L A+ LI
Sbjct: 197 DGLTLNRTQMHNAGFGPLTDLVFAFASQLIPLGMDDTEAGLLSAICLI 244
>gi|444724465|gb|ELW65068.1| Integral membrane protein GPR137 [Tupaia chinensis]
Length = 1322
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 121/260 (46%), Gaps = 37/260 (14%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 1012 PKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC 1071
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
RF KCL+VGM+KE VR D ++G R + +P+ P P + A+ P P
Sbjct: 1072 RFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAPVN 1131
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A ++ H L E ++L Y P+P P
Sbjct: 1132 A-----------------LVSHL---------LVVEPEKL----------YAMPDPAGPD 1155
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
P + L + V +A IPGFS L DQ + QS +E+ VL +A R+
Sbjct: 1156 GHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSL 1214
Query: 279 AEDTKLIFCNGVVLEKQQCQ 298
+L F +VL+++ +
Sbjct: 1215 PLQDELAFAEDLVLDEEGAR 1234
>gi|226050|prf||1408258A retinoic acid receptor
Length = 448
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 130/293 (44%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGC+GFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCRGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K + K S QE S Y L+ +
Sbjct: 141 CFEVGMSKESVRNDRNKKK------KETSKQECTES---------YEMTAELDDLTEKIR 185
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + SA + L+ + +
Sbjct: 186 KAHQ-------------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|301614419|ref|XP_002936679.1| PREDICTED: retinoic acid receptor gamma-A-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 476
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 132/293 (45%), Gaps = 44/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQFCR QK
Sbjct: 110 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQK 169
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C QVGM KE +++ R + + K P S Y P +E I +
Sbjct: 170 CFQVGMSKE-----AVRNDRNKKKKEIKEEVVVPDS---------YEMPPEMEELIQKVS 215
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + SA + L+ + +
Sbjct: 216 KAHQ-------------------ETFPSLCQLGKYTTNSSADHRV------QLDLGLWD- 249
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L +SA L++ +LR+ R E
Sbjct: 250 ----KFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQD 305
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 306 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFADQLLPLEMDDTETGLLSAICLI 358
>gi|327176811|gb|AEA29832.1| retinoid X receptor splice variant [Homarus americanus]
Length = 410
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C D++C +DKR+RNRCQFCR+
Sbjct: 80 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRSCTIDKRQRNRCQFCRY 139
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPS-KPKSPQES-----PPSPPVSLITALYREPNPL 154
QKCL +GM +E V+ +++ R R K ES P S+ A +
Sbjct: 140 QKCLSMGMKREAVQVGAVEEERQRTKGDKGDGDTESSCGGISDMPITSIREAELSVEHTD 199
Query: 155 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E P+ + + + + + +A IP F+DL EDQ +L ++ EL
Sbjct: 200 EQPLDQGDAVTNICQAADRHLVQLVEWAKHIPHFTDLPVEDQVVLLKAGWNELL 253
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 200 FQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQEL 259
+ A L + + + PL+ A Q L V+ +H IP F+DL EDQ +
Sbjct: 188 IREAELSVEHTDEQPLDQGDAVTNICQAADRHLVQLVEWAKH----IPHFTDLPVEDQVV 243
Query: 260 LFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC-QRSFGDDWLNAILEFCQSLHL 318
L ++ EL + ++R+ + ++ G+V+ + Q G + + E +
Sbjct: 244 LLKAGWNELLIASFSHRSMGVEDGIVLATGLVVHRSSAHQAGVGTIFDRVLSELVAKMKE 303
Query: 319 MEIDISAFACLCALTL 334
M++D + CL ++ L
Sbjct: 304 MKMDKTELGCLRSIVL 319
>gi|118343759|ref|NP_001071700.1| nuclear receptor [Ciona intestinalis]
gi|70569456|dbj|BAE06416.1| nuclear receptor [Ciona intestinalis]
Length = 515
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 107/210 (50%), Gaps = 26/210 (12%)
Query: 21 SSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCL 80
S ++ +P +S TPP +LC VCGDIA+ HYGV +CE CK FFKRT+Q Y C
Sbjct: 156 SESTGTPAPLSSSSTPPK--RLCLVCGDIASGYHYGVASCEACKAFFKRTIQGSIDYTCP 213
Query: 81 ADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPP--- 137
A C + KRRR CQ CRF KCL+VGM++E VR D ++G R + K + E P
Sbjct: 214 AANDCEITKRRRKSCQSCRFSKCLRVGMLREGVRLDRVRGGRQKYKRKIDA-NEMPYLVA 272
Query: 138 ------------SPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVD-------VI 178
SP L L EP+ L P + + S+LT D VI
Sbjct: 273 VPAAAEPAPNVLSPNKILSHLLMAEPDKLFAP-HDHSATRSEISILTALCDLADRELVVI 331
Query: 179 RHFADKIPGFSDLCKEDQELLFQSASLELF 208
+A IPGF+ L DQ L QSA +E+
Sbjct: 332 IGWAKHIPGFTVLSLADQMALLQSAWMEVL 361
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 206 ELFYREPNPLEPPIAEPEKIQQFYSLLTTSVD-------VIRHFADKIPGFSDLCKEDQE 258
L EP+ L P + + S+LT D VI +A IPGF+ L DQ
Sbjct: 292 HLLMAEPDKLFAP-HDHSATRSEISILTALCDLADRELVVIIGWAKHIPGFTVLSLADQM 350
Query: 259 LLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC 297
L QSA +E+ VL + +R+ + D L+ +L+ + C
Sbjct: 351 ALLQSAWMEVLVLGIVFRSLSRDGDLVIAEDFILDAENC 389
>gi|288558021|ref|NP_001083084.2| estrogen receptor 1 [Xenopus laevis]
gi|187856984|dbj|BAG31992.1| brain estrogen receptor alpha1 [Xenopus laevis]
Length = 585
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 143/298 (47%), Gaps = 30/298 (10%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 176 TRFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 235
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITA-LYREPNPLEPPI 158
+KC +VGM+K +R D GR + + + P++ P + TA ++ P+
Sbjct: 236 LRKCYEVGMMKGGIRKDRRGGRMLKHKQQKEEPEQKNDVNPSEIRTASIWVNPS------ 289
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ K+ SL T+ +I + P + Y E + +P
Sbjct: 290 VKSMKLSPVLSL--TAEQLISALMEAEP-------------------PIVYSEHDSTKP- 327
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 328 LSEASMMTLLTNLADKELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMVGLIWRSV 387
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL F ++L++ Q + G + + ++ +M + F CL ++ L+
Sbjct: 388 EHPEKLSFAPNLLLDRNQGRCVEGLVEIFDMLVTTATRFRMMRLHGEEFICLKSIILL 445
>gi|410986573|ref|XP_003999584.1| PREDICTED: retinoic acid receptor RXR-gamma [Felis catus]
Length = 463
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 135/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECASSGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 247 EPKTESYGDMNMENSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D + CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKAELGCLRAIVL 376
>gi|313757601|gb|ADR78566.1| ecdysone response nuclear receptor E75A [Agelena silvatica]
Length = 916
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 151/303 (49%), Gaps = 31/303 (10%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 37 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRL 96
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++ VR GR+P + K+ I A ++ N A
Sbjct: 97 KKCIAVGMSRDAVRF-------GRVPKREKAK-----------ILAAMQKVNACSQEKAL 138
Query: 161 PEKIQQFYSLLTTSV----DVIRHFADKIPGFSDLCKEDQELLFQSASLEL---FYREPN 213
+++ LLTT V + + DK+ G + K + ++ +L P+
Sbjct: 139 CAELEDELRLLTTIVRAHEETCDYTRDKVAGLVE--KARTQPVYTQCPPQLACPLNPAPH 196
Query: 214 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
LE ++ ++ F ++ + FA +IPGF L ++DQ L ++ E+ ++RL
Sbjct: 197 ILENGVS--HYMEDFSERFAPAIKGVVEFAKRIPGFGFLSQDDQVTLLKAGVFEVLLVRL 254
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDW-LNAILEFCQSLHLMEIDISAFACLCAL 332
A A+ LI NG VL ++ + + L+++ +F + L+ + + S C++
Sbjct: 255 ACMFDAQANSLICLNGQVLRRESLHTASNARFLLDSMFDFAERLNALHLSDSEVGPFCSV 314
Query: 333 TLI 335
+I
Sbjct: 315 VVI 317
>gi|64124|emb|CAA78621.1| retinoic acid receptor alpha 2 [Notophthalmus viridescens]
Length = 452
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 132/294 (44%), Gaps = 46/294 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKTCIINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K ++ P K + + +P V + E
Sbjct: 141 CFEVGMSKESVRNDRNKKKKQEAP-KQECTESYIITPEVEDLV----------------E 183
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA-E 221
K+++ + + P L K Y N E ++ +
Sbjct: 184 KVRKAHQ-------------ETFPALCQLGK---------------YTTNNSSEERVSLD 215
Query: 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
+ +F L T + FA ++PGF+ L DQ L ++A L++ +LR+ R +
Sbjct: 216 IDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQ 275
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 DTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 329
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 104/215 (48%), Gaps = 25/215 (11%)
Query: 16 HSAPLSSASSSPGCDTSRPTPPSPS--QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQK 73
HS S SS + PP P + C VC D ++ HYGV CEGCKGFF+R++QK
Sbjct: 52 HSIETQSTSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQK 111
Query: 74 GSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKP---- 129
Y C DK C ++K RNRCQ+CR QKC +VGM KE VR D K ++ P +
Sbjct: 112 NMVYTCHRDKTCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKQEAPKQECTES 171
Query: 130 ---------------KSPQESPPSPPVSLITALYREPNPLEPPIA-EPEKIQQFYSLLTT 173
K+ QE+ P+ Y N E ++ + + +F L T
Sbjct: 172 YIITPEVEDLVEKVRKAHQETFPA---LCQLGKYTTNNSSEERVSLDIDLWDKFSELSTK 228
Query: 174 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ FA ++PGF+ L DQ L ++A L++
Sbjct: 229 CIIKTVEFAKQLPGFTTLTIADQITLLKAACLDIL 263
>gi|387017476|gb|AFJ50856.1| Oxysterols receptor LXR-beta-like [Crotalus adamanteus]
Length = 435
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 153/332 (46%), Gaps = 46/332 (13%)
Query: 21 SSASSSPGCDTSRPTPPSPSQL----CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSK 76
S+ S++ R P+P L C+VCGD A+ HY V +CEGCKGFF+R++ KG++
Sbjct: 49 STHSTAEEPARKRKKGPAPKMLGDEVCSVCGDKASGFHYNVLSCEGCKGFFRRSLIKGAQ 108
Query: 77 YVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV------RTDSLKGRRG-RLPSKP 129
Y C C +D R +CQ CR +KC Q GM +E V R + G +P++
Sbjct: 109 YTCKGSGQCHMDMYMRRKCQECRLKKCRQAGMREECVLSEEQIRKKKISKHEGDTVPAEE 168
Query: 130 KSPQESPPSPPVSLITALYR-EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK---- 184
+ E PP+ AL + EP PL P + IQQ + R F+D+
Sbjct: 169 RDGDEVLRVPPLLCDPALSQPEPVPLTP--QQEGMIQQLVAAQQQCNK--RSFSDQPKVT 224
Query: 185 -IPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
P SD PN E A ++ F L SV I FA
Sbjct: 225 PWPMSSD---------------------PNSRE---ARQQRFAHFTELAIISVQEIVDFA 260
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FG 302
++PGF L +EDQ L +++++E+ +L A R E + F K R+
Sbjct: 261 KQVPGFLQLSREDQIALLKASTIEIMLLETARRYNHETQCITFLKDFTYSKDDFHRAGLQ 320
Query: 303 DDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+++N I EF +++ +++D + +A L A+ +
Sbjct: 321 VEFINPIFEFSRAMRELQLDDAEYALLIAINI 352
>gi|225735540|dbj|BAF34365.2| estrogen receptor [Mytilus edulis]
Length = 467
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 138/306 (45%), Gaps = 58/306 (18%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A+ C + KRRR CQ
Sbjct: 128 GPKRLCLVCGDIASGYHYGVSSCEACKAFFKRTIQGNIEYSCPANWDCEITKRRRKACQA 187
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCL+VGM++E VR D ++G R K K +S P
Sbjct: 188 CRFQKCLRVGMLREGVRLDRVRGGR----QKYKRTVDSQP-------------------- 223
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE--DQELLFQSASLEL----FYRE 211
+I+H +P C E + ++L Q S+EL Y
Sbjct: 224 -------------------IIQHI---LPMVKKACIEVCENKILTQLGSIELQLDKLYAN 261
Query: 212 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVL 271
P+P + E + L + + +A ++PGF +L DQ L Q + LE+ L
Sbjct: 262 PDP-DLQGDEIRFLAAVSDLADRELVITISWAKQVPGFCNLSLSDQMNLLQHSWLEILCL 320
Query: 272 RLAYRTRAEDTKLIFCNGVVL---EKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFAC 328
L YR+ + + F + L E +QCQ S D N + + M + +
Sbjct: 321 NLVYRSCPYTSYIRFAEDLQLTPDESKQCQCSLELD--NLTRKLAKKFTNMGVTKEEYLL 378
Query: 329 LCALTL 334
L A+TL
Sbjct: 379 LKAMTL 384
>gi|133488|sp|P18514.1|RARA_NOTVI RecName: Full=Retinoic acid receptor alpha; Short=RAR-alpha;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1
gi|64126|emb|CAA35602.1| retinoic acid receptor alpha [Notophthalmus viridescens]
gi|226520|prf||1516344A retinoic acid receptor alpha
Length = 458
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 134/294 (45%), Gaps = 46/294 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 87 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKTCIINKVTRNRCQYCRLQK 146
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K ++ QE+P + E I PE
Sbjct: 147 CFEVGMSKESVRNDRNKKKK----------QEAP-------------KQECTESYIITPE 183
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA-E 221
+ V+ +R + F LC+ + Y N E ++ +
Sbjct: 184 --------VEDLVEKVRKAHQET--FPALCQLGK------------YTTNNSSEERVSLD 221
Query: 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
+ +F L T + FA ++PGF+ L DQ L ++A L++ +LR+ R +
Sbjct: 222 IDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQ 281
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 282 DTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 335
>gi|109106491|ref|XP_001109209.1| PREDICTED: oxysterols receptor LXR-alpha isoform 13 [Macaca
mulatta]
Length = 447
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 148/312 (47%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D
Sbjct: 84 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMD 143
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + +SL
Sbjct: 144 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHAISLPPRAS 197
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P L P PE++ L+ R FSD +
Sbjct: 198 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNRR------SFSDRLRVT------------- 236
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 237 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 293
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 294 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 353
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 354 AEFALLIAISIF 365
>gi|109106499|ref|XP_001108793.1| PREDICTED: oxysterols receptor LXR-alpha isoform 5 [Macaca mulatta]
Length = 402
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 148/312 (47%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D
Sbjct: 39 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMD 98
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + +SL
Sbjct: 99 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHAISLPPRAS 152
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P L P PE++ L+ R FSD +
Sbjct: 153 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNRR------SFSDRLRVT------------- 191
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 192 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 248
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 249 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 308
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 309 AEFALLIAISIF 320
>gi|443723214|gb|ELU11745.1| hypothetical protein CAPTEDRAFT_62897, partial [Capitella teleta]
Length = 347
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 144/304 (47%), Gaps = 35/304 (11%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV CEGCKGFF+R++Q+ +Y CL ++ C + + RNRCQ+CR
Sbjct: 8 LCRVCGDKASGFHYGVHACEGCKGFFRRSIQQKIQYRPCLKNQQCSIMRVNRNRCQYCRL 67
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++ VR GR+P + K+ +I + + +
Sbjct: 68 KKCIAVGMSRDAVRF-------GRVPKREKA----------KIIEQMQK--------VNA 102
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY-----REPNPL 215
++ SLL DVI+ D D F+ A E + + PL
Sbjct: 103 QSQVSVLNSLLENENDVIQKIMDSHFRLCDFTHSKFVQFFEKAWAEPRFVDCPAHKACPL 162
Query: 216 EPPIAEPEKIQQ---FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
P +E + + Q F + T ++ + +FA IPGFS +EDQ L ++ + E+ ++
Sbjct: 163 NPTPSEQDSMSQWDEFSNCFTPAIRNVVYFAKCIPGFSVFSQEDQVTLLKAGTFEVLLVH 222
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQ-QCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
LA + ++F NG + ++ + L+++ +F L+ +++ A
Sbjct: 223 LAPLFDSRTNTMLFANGTLYKRSAHTTNTNAGFLLDSMFDFADHLNELKLKDEEIGLFSA 282
Query: 332 LTLI 335
L +I
Sbjct: 283 LVII 286
>gi|301614421|ref|XP_002936680.1| PREDICTED: retinoic acid receptor gamma-A-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 459
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 132/293 (45%), Gaps = 44/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQFCR QK
Sbjct: 93 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQK 152
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C QVGM KE +++ R + + K P S Y P +E I +
Sbjct: 153 CFQVGMSKE-----AVRNDRNKKKKEIKEEVVVPDS---------YEMPPEMEELIQKVS 198
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + SA + L+ + +
Sbjct: 199 KAHQ-------------------ETFPSLCQLGKYTTNSSADHRV------QLDLGLWD- 232
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L +SA L++ +LR+ R E
Sbjct: 233 ----KFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQD 288
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 289 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFADQLLPLEMDDTETGLLSAICLI 341
>gi|113197752|gb|AAI21596.1| LOC779621 protein [Xenopus (Silurana) tropicalis]
Length = 452
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 136/298 (45%), Gaps = 61/298 (20%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C K C +DKR+RNRCQ+CR+
Sbjct: 127 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDTKDCLIDKRQRNRCQYCRY 186
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +EV + R S+ KS E+ + S + R LE +A
Sbjct: 187 QKCLAMGMKREV--------QEERQRSREKSDTEAESTSSTSEEMPVER---ILEAELAV 235
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
KI+ F G + L PN P+
Sbjct: 236 EPKIEAF-------------------GDAGL--------------------PNSTNDPVT 256
Query: 221 E--PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++R+
Sbjct: 257 NICHAADKQLFTLV--------EWAKRIPHFSDLPLEDQVILLRAGWNELLIASFSHRSV 308
Query: 279 AEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ ++ G+ + + + G + + E + ME+D S CL A+ L
Sbjct: 309 SVQDGILLATGLHVHRSSAHNAGVGSIFDRVLTELVSKMKDMEMDKSELGCLRAIVLF 366
>gi|194747571|ref|XP_001956225.1| GF24702 [Drosophila ananassae]
gi|190623507|gb|EDV39031.1| GF24702 [Drosophila ananassae]
Length = 505
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 137/282 (48%), Gaps = 23/282 (8%)
Query: 23 ASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAD 82
AS++ G S +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A+
Sbjct: 112 ASNAVGGAGSGSVRDEMRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPAN 171
Query: 83 KACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSP-----QESPP 137
C ++KRRR CQ CRFQKCL +GM+KE VR D ++G R + P S Q
Sbjct: 172 NECEINKRRRKACQACRFQKCLLMGMLKEGVRLDRVRGGRQKYRRNPVSNSYQTMQLLYQ 231
Query: 138 SPPVSLITALYREP-NPLEP---PIAEPEKIQQFYSLLTTSVDVIRHFAD-KIPGFSDLC 192
S SL E N EP + P QQ ++ + + + + K+ + +
Sbjct: 232 SNTTSLCDVKILEVLNAYEPDALSVQSPPPQQQVHTTSSGNDEASSNSGSIKLESNAGVV 291
Query: 193 KEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDL 252
+FQ+ + + +PN + +++ + + + +A +IPGF DL
Sbjct: 292 TLSGTCIFQNNN----HNDPNEILSVLSD---------IYDKELVSVIGWAKQIPGFIDL 338
Query: 253 CKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEK 294
DQ L Q + E+ L+L +R+ + KL F V +++
Sbjct: 339 PLNDQMKLLQVSWAEILTLQLTFRSLPFNGKLCFATDVWMDE 380
>gi|402893629|ref|XP_003909994.1| PREDICTED: oxysterols receptor LXR-alpha isoform 4 [Papio anubis]
gi|402893631|ref|XP_003909995.1| PREDICTED: oxysterols receptor LXR-alpha isoform 5 [Papio anubis]
Length = 453
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 149/313 (47%), Gaps = 41/313 (13%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D
Sbjct: 90 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMD 149
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + VSL
Sbjct: 150 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHAVSLPPRAS 203
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVI-RHFADKIPGFSDLCKEDQELLFQSASLEL 207
P L P PE++ L+ R F+D++
Sbjct: 204 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNQRSFSDRL---------------------- 239
Query: 208 FYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 263
P P+ P E QQ F L SV I FA ++PGF L +EDQ L ++
Sbjct: 240 -RVTPWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKT 298
Query: 264 ASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEID 322
+++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 299 SAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLN 358
Query: 323 ISAFACLCALTLI 335
+ FA L A+++
Sbjct: 359 DAEFALLIAISIF 371
>gi|295841628|dbj|BAJ07193.1| estrogen receptor [Mytilus galloprovincialis]
Length = 453
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 138/306 (45%), Gaps = 58/306 (18%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A+ C + KRRR CQ
Sbjct: 121 GPKRLCLVCGDIASGYHYGVSSCEACKAFFKRTIQGNIEYSCPANWDCEITKRRRKACQA 180
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCL+VGM++E VR D ++G R K K +S P
Sbjct: 181 CRFQKCLRVGMLREGVRLDRVRGGR----QKYKRTVDSQP-------------------- 216
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE--DQELLFQSASLEL----FYRE 211
+I+H +P C E + ++L Q S+EL Y
Sbjct: 217 -------------------IIQHI---LPMVKKACIEVCENKILTQLGSIELQLDKLYAN 254
Query: 212 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVL 271
P+P + E + L + + +A ++PGF +L DQ L Q + LE+ L
Sbjct: 255 PDP-DLQGDEIRFLAAVSDLADRELVITISWAKQVPGFCNLSLSDQMNLLQHSWLEILCL 313
Query: 272 RLAYRTRAEDTKLIFCNGVVL---EKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFAC 328
L YR+ + + F + L E +QCQ S D N + + M + +
Sbjct: 314 NLVYRSCPYTSYIRFAEDLQLTPDESKQCQCSLELD--NLTRKLAKKFTNMGVTKEEYLL 371
Query: 329 LCALTL 334
L A+TL
Sbjct: 372 LKAMTL 377
>gi|76786382|gb|ABA54942.1| thyroid receptor alpha-2 [Carassius auratus]
Length = 378
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 141/296 (47%), Gaps = 27/296 (9%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG--SKYVCLADKACPVDKRRRNRCQFCRF 100
C VCGD A HY TCEGCKGFF+RT+QK Y C D C +DK RN+CQ CRF
Sbjct: 51 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDSCCIIDKITRNQCQLCRF 110
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ +GM ++V DS + + RL + + ++ ++ L+ P EP ++E
Sbjct: 111 KKCISMGMAMDLVLDDSKRVAKRRLIEENRERKKKE-----EMVKTLHTRP---EPTVSE 162
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL-EPPI 219
+ L+ + RH + P + K E + QS P P +
Sbjct: 163 -------WELIRMVTEAHRHTNAQGPHWKQKRKFLPEDIGQS---------PAPTSDNDK 206
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+ E +F ++T ++ + FA K+P FS+L EDQ +L + +E+ LR A R
Sbjct: 207 VDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDP 266
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
E L + + ++Q + +AI + +SL +D S A L A+ L+
Sbjct: 267 ESETLTLSGEMAVSREQLKNGGLGVVSDAIFDLGKSLSQFNLDDSEVALLQAVLLM 322
>gi|216409684|dbj|BAH02279.1| retinoic acid receptor beta [Homo sapiens]
Length = 448
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 130/293 (44%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K + K S QE S Y L+ +
Sbjct: 141 CFEVGMSKESVRNDRNKKK------KETSKQECTES---------YEMTAELDDLTEKIR 185
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + SA + L+ + +
Sbjct: 186 KAHQ-------------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L + + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELASKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|291397512|ref|XP_002715914.1| PREDICTED: retinoid X receptor gamma [Oryctolagus cuniculus]
gi|262263191|dbj|BAI48098.1| retinoid X receptor, gamma [Sus scrofa]
Length = 340
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 14 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 73
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 74 QKCLVMGMKREAVQEERQRSRE-RAESEAECASSGHEDMPVERI---------LEAELAV 123
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 124 EPKTESYGDMNMENSTNDPVTNICHAADK------------------------------- 152
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 153 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 193
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 194 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 253
>gi|375151577|ref|NP_001243499.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|375151581|ref|NP_001243500.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|410034069|ref|XP_003949681.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
gi|410034071|ref|XP_003949682.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
Length = 340
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 14 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 73
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 74 QKCLVMGMKREAVQEERQRSRE-RAESEAECATSGHEDMPVERI---------LEAELAV 123
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 124 EPKTESYGDMNMENSTNDPVTNICHAADK------------------------------- 152
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 153 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 193
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 194 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 253
>gi|296785035|ref|NP_001171885.1| nuclear receptor subfamily 1, group H, member 3 [Oryctolagus
cuniculus]
gi|296040388|dbj|BAJ07606.1| liver X receptor alpha [Oryctolagus cuniculus]
Length = 447
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 49/308 (15%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D R +CQ CR
Sbjct: 95 NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMDTYMRRKCQECR 154
Query: 100 FQKCLQVGMVKEVV------RTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNP 153
+KC Q GM +E V R LK + P +P SPP +L
Sbjct: 155 LRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAQAAAGPPRAP-SPPQAL---------- 203
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVI-RHFADKIPGFSDLCKEDQELLFQSASLELFYREP 212
P PE++ L+ R F+D++ P
Sbjct: 204 ---PQLSPEQLGMIEKLVAAQQQCNQRSFSDQL-----------------------RVTP 237
Query: 213 NPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 268
P+ P E QQ F L SV I FA ++PGF L +EDQ L +++++E+
Sbjct: 238 WPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEV 297
Query: 269 FVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFA 327
+L + R + F ++ ++ +++N I EF ++++ ++++ + FA
Sbjct: 298 MLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFA 357
Query: 328 CLCALTLI 335
L A+++
Sbjct: 358 LLIAISIF 365
>gi|241997792|ref|XP_002405625.1| AamEcRA1, putative [Ixodes scapularis]
gi|215493730|gb|EEC03371.1| AamEcRA1, putative [Ixodes scapularis]
Length = 433
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 147/321 (45%), Gaps = 41/321 (12%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
P P +LC VCGD A+ HY TCEGCKGFF+R++ K + Y C C +D R
Sbjct: 54 PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCDIDMYMRR 113
Query: 94 RCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGRLPSKPKS-PQESP-----PSP 139
+CQ CR +KCL VGM E ++ +S K ++ + +P S +ESP PSP
Sbjct: 114 KCQECRLKKCLSVGMRPECVVPEYQCAIKRESKKHQKDK--DRPNSTTRESPATSMGPSP 171
Query: 140 PVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL 199
S + L EP +P + P L ++ D+I F +ED
Sbjct: 172 GGSSVVQLM-EPEDKKPLVLSP----GVKPLSSSQEDLINKLVYYQQEFESPSEEDM--- 223
Query: 200 FQSASLELFYREPNPLEPPIAEPE-----KIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 254
++ P P+ + E + Q + +V +I F+ ++PGF L +
Sbjct: 224 ----------KKTTPF--PLGDSEEDNQRRFQHITEITILTVQLIVEFSKRVPGFDTLAR 271
Query: 255 EDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQ 314
EDQ L ++ S E+ +LR A + + ++F N + + + D +A+ FC+
Sbjct: 272 EDQITLLKACSSEVMMLRGARKYDVKTDSIVFANNQPYTRDNYRSASVGDSADALFRFCR 331
Query: 315 SLHLMEIDISAFACLCALTLI 335
+ + +D + +A L A+ +
Sbjct: 332 KMCQLRVDNAEYALLTAIVIF 352
>gi|35396539|gb|AAQ84783.1| estrogen receptor alpha 2 [Xenopus laevis]
Length = 427
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 144/306 (47%), Gaps = 33/306 (10%)
Query: 36 PPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKR 90
PPS ++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK
Sbjct: 9 PPSMESTKETRFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKN 68
Query: 91 RRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYRE 150
RR CQ CR +KC +VGM+K +R D GR + + + P++ P + TA
Sbjct: 69 RRKSCQACRLRKCYEVGMMKGGIRKDRRGGRMLKHKQQKEEPEQKNDVNPSEIRTA---- 124
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYR 210
+ P + K+ SL T+ +I + P + Y
Sbjct: 125 -SIWVNPSVKSMKLSPVLSL--TAEQLISALMEAEP-------------------PIVYS 162
Query: 211 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFV 270
E + +P ++E + +L + + ++A ++PGF DL DQ L + A LE+ +
Sbjct: 163 EHDSTKP-LSEASMMTLLTNLADKELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILM 221
Query: 271 LRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISAFACL 329
+ L +R+ KL F ++L++ Q + G + + ++ +M + F CL
Sbjct: 222 VGLIWRSVEHPEKLSFAPNLLLDRNQGRCVEGLVEIFDMLVTTATRFRMMRLHGEEFICL 281
Query: 330 CALTLI 335
++ L+
Sbjct: 282 KSIILL 287
>gi|326676287|ref|XP_001921093.3| PREDICTED: estrogen-related receptor gamma [Danio rerio]
Length = 451
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 129/298 (43%), Gaps = 45/298 (15%)
Query: 37 PSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQ 96
P P +LC VCGD A+ HYGV +CE CK FFKRT+Q +Y C C + KRRR CQ
Sbjct: 115 PGPKRLCLVCGDFASGYHYGVASCEACKAFFKRTIQGNIEYSCPVVNDCEITKRRRKSCQ 174
Query: 97 FCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEP 156
CRFQKCL+ GM++E VR D ++G R + + S + V TA Y N
Sbjct: 175 ACRFQKCLRAGMMREGVRMDRVRGGRQKYKRRVDS------TLSVFSKTA-YTHAN---- 223
Query: 157 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
+P + + LL V +R D SDL
Sbjct: 224 ---KPIRNRLICELLLCEVTPLRAAPDSSTPDSDL------------------------- 255
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
+ + LL + V+ +A IPGF L DQ L QS +E +L +A+R
Sbjct: 256 ------KTLMTLCDLLNRELLVMIGWAKHIPGFCALSLLDQMALLQSGWMETLLLNVAWR 309
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++A +L F + L + Q Q + D A+ M + F L A+ L
Sbjct: 310 SQALAEELQFAENLRLNESQSQAAGLHDLYTALRHLTCRYQQMSLKQEEFIILKAMAL 367
>gi|355707873|gb|AES03091.1| nuclear receptor subfamily 1, group H, member 3 [Mustela putorius
furo]
Length = 367
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 59/333 (17%)
Query: 27 PGCDT----------SRPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQ 72
PG DT R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V
Sbjct: 68 PGVDTPPESTELRPQKRKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVI 127
Query: 73 KGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKE-VVRTDSLKGRR-GRLPSKPK 130
KG++YVC + CP+D R +CQ CR +KC Q GM +E V+ + ++ ++ RL +
Sbjct: 128 KGARYVCHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRLEEEQA 187
Query: 131 SPQESPP---SPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 187
PP SPP L P PE+ L+ R
Sbjct: 188 QATSMPPRVSSPPQVL-------------PQLSPEQRGMIEKLVAAQQQCNRR------S 228
Query: 188 FSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFA 243
FSD + P P+ P E QQ F L SV I FA
Sbjct: 229 FSDRLRVT----------------PWPMAPDPQSREARQQRFAHFTELAIVSVQEIVDFA 272
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FG 302
++PGF L +EDQ L +++++E+ +L + R + F ++ ++
Sbjct: 273 KQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQ 332
Query: 303 DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+++N I EF ++++ ++++ + FA L A+++
Sbjct: 333 VEFINPIFEFSRAMNELQLNDAEFALLIAISIF 365
>gi|213623778|gb|AAI70207.1| Estrogen receptor alpha 2 [Xenopus laevis]
Length = 427
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 144/306 (47%), Gaps = 33/306 (10%)
Query: 36 PPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKR 90
PPS ++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK
Sbjct: 9 PPSMESTKETRFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKN 68
Query: 91 RRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYRE 150
RR CQ CR +KC +VGM+K +R D GR + + + P++ P + TA
Sbjct: 69 RRKSCQACRLRKCYEVGMMKGGIRKDRRGGRMLKHKQQKEEPEQKNDVNPSEIRTA---- 124
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYR 210
+ P + K+ SL T+ +I + P + Y
Sbjct: 125 -SIWVNPSVKSMKLSPVLSL--TAEQLISALMEAEP-------------------PIVYS 162
Query: 211 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFV 270
E + +P ++E + +L + + ++A ++PGF DL DQ L + A LE+ +
Sbjct: 163 EHDSTKP-LSEASMMTLLTNLADKELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILM 221
Query: 271 LRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISAFACL 329
+ L +R+ KL F ++L++ Q + G + + ++ +M + F CL
Sbjct: 222 VGLIWRSVEHPEKLSFAPNLLLDRNQGRCVEGLVEIFDMLVTTATRFRMMRLHGEEFICL 281
Query: 330 CALTLI 335
++ L+
Sbjct: 282 KSIILL 287
>gi|1710719|sp|P51128.1|RXRA_XENLA RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
Length = 488
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 119/229 (51%), Gaps = 27/229 (11%)
Query: 4 GRSSSSESPKLRHSAPLSSASSS------PGCDTSRPTPPSPS--------QLCAVCGDI 49
G + SP++ +P++S SS+ PG + P PS +CA+CGD
Sbjct: 110 GLGYGTGSPQIH--SPMNSVSSTEDIKPPPGINGILKVPMHPSGAMASFTKHICAICGDR 167
Query: 50 AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMV 109
++ +HYGV +CEGCKGFFKRTV+K Y C K C +DKR+RNRCQ+CR+QKCL +GM
Sbjct: 168 SSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCMIDKRQRNRCQYCRYQKCLAMGMK 227
Query: 110 KEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIA 159
+E V+ + +G+ R ++ +S + PV I T Y E N P +
Sbjct: 228 REAVQEERQRGKE-RNENEVESSNSANEDMPVEKILEAEHAVEPKTETYTEANMGLAPNS 286
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 287 PSDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 335
>gi|405953743|gb|EKC21345.1| Retinoic acid receptor RXR-alpha [Crassostrea gigas]
Length = 446
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 107/195 (54%), Gaps = 12/195 (6%)
Query: 21 SSASSSPGCDTSRP-TPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVC 79
SASS PG + P + + +CA+CGD A+ +HYGV +CEGCKGFFKRTV+K Y C
Sbjct: 103 GSASSPPGSNPHMPHSNLNSKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYAC 162
Query: 80 LADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSP 139
D+ C +DKR+RNRCQ+CR+ KCL +GM +E V+ + R R+ K + ES +
Sbjct: 163 RDDRNCIIDKRQRNRCQYCRYMKCLNMGMKREAVQEE-----RQRVKEKGEGEVESTSTA 217
Query: 140 ----PVSLI--TALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 193
PV I L EP A+ + + + + +A +IP F++L
Sbjct: 218 NSDMPVEKILEAELAVEPKTDTYIDAQKDTVTNICQAADKQLFTLVEWAKRIPHFTELPL 277
Query: 194 EDQELLFQSASLELF 208
EDQ +L ++ EL
Sbjct: 278 EDQVILLRAGWNELL 292
>gi|93003052|tpd|FAA00109.1| TPA: nuclear receptor [Ciona intestinalis]
Length = 656
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 85/135 (62%), Gaps = 9/135 (6%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD A QHYGV CEGCKGFFKR+VQK ++YVCL + CP+DK+ R C +CR+QK
Sbjct: 486 CAVCGDKARWQHYGVLACEGCKGFFKRSVQKDARYVCLGNSNCPIDKKTRTHCPYCRYQK 545
Query: 103 CLQVGMVKEVVRTDSLKGRR----GRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
CL+VGM+K VVRTD + RR +L S P S S P P S + R P+ P+
Sbjct: 546 CLRVGMIKNVVRTDPHQSRRKAAKTKLVSTP-SHHCSNPRPIASTGSQHERVPDAHTRPL 604
Query: 159 AEPEKIQQFYSLLTT 173
A + Q S+ TT
Sbjct: 605 A----VTQPISVTTT 615
>gi|426245397|ref|XP_004016498.1| PREDICTED: oxysterols receptor LXR-alpha [Ovis aries]
Length = 447
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 146/301 (48%), Gaps = 35/301 (11%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D R +CQ CR
Sbjct: 95 NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMDTYMRRKCQECR 154
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC Q GM +E V ++ + R +L + + ++ +PP + P P
Sbjct: 155 LRKCRQAGMREECVLSEE-QIRLKKLKRQEEEQAQATSAPPRA-------SSPPQVLPQL 206
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
PE++ L+ R FSD + P P+ P
Sbjct: 207 SPEQLGMIEKLVAAQQLCNRR------SFSDQLRVT----------------PWPMAPDP 244
Query: 220 AEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
E QQ F L SV I FA ++PGF L +EDQ L +++++E+ +L +
Sbjct: 245 QSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSR 304
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R + F ++ ++ +++N I EF ++++ ++++ + FA L A+++
Sbjct: 305 RYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISI 364
Query: 335 I 335
Sbjct: 365 F 365
>gi|118343916|ref|NP_001071780.1| nuclear receptor [Ciona intestinalis]
gi|70570410|dbj|BAE06595.1| nuclear receptor [Ciona intestinalis]
Length = 656
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 85/135 (62%), Gaps = 9/135 (6%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD A QHYGV CEGCKGFFKR+VQK ++YVCL + CP+DK+ R C +CR+QK
Sbjct: 486 CAVCGDKARWQHYGVLACEGCKGFFKRSVQKDARYVCLGNSNCPIDKKTRTHCPYCRYQK 545
Query: 103 CLQVGMVKEVVRTDSLKGRR----GRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
CL+VGM+K VVRTD + RR +L S P S S P P S + R P+ P+
Sbjct: 546 CLRVGMIKNVVRTDPHQSRRKAAKTKLVSTP-SHHCSNPRPIASTGSQHERVPDAHTRPL 604
Query: 159 AEPEKIQQFYSLLTT 173
A + Q S+ TT
Sbjct: 605 A----VTQPISVTTT 615
>gi|403254725|ref|XP_003920109.1| PREDICTED: oxysterols receptor LXR-alpha isoform 1 [Saimiri
boliviensis boliviensis]
Length = 447
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 146/312 (46%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC CP+D
Sbjct: 84 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHGGGHCPMD 143
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 144 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSLPLRAS 197
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P L P PE++ L+ R FSD +
Sbjct: 198 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNRR------SFSDQLRVT------------- 236
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 237 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 293
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 294 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 353
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 354 AEFALLIAISIF 365
>gi|65032|emb|CAA42039.1| retinoc acid receptor gamma B [Xenopus laevis]
Length = 442
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 130/295 (44%), Gaps = 48/295 (16%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQFCR QK
Sbjct: 76 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQK 135
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C QVGM KE +++ R + + K P S Y P +E I +
Sbjct: 136 CFQVGMSKE-----AVRNDRNKKKKEIKEEVVLPDS---------YEMPPEMEELIQKVS 181
Query: 163 KIQQ--FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
K Q F SL AD Q L+L +
Sbjct: 182 KAHQETFPSLCQLGKYTTNSSAD-----------------QRVQLDLGLWD--------- 215
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+F L T + I FA ++PGF+ L DQ L +SA L++ +LR+ R E
Sbjct: 216 ------KFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPE 269
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 270 QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLEMDDTETGLLSAICLI 324
>gi|402893623|ref|XP_003909991.1| PREDICTED: oxysterols receptor LXR-alpha isoform 1 [Papio anubis]
Length = 447
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 149/313 (47%), Gaps = 41/313 (13%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D
Sbjct: 84 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMD 143
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + VSL
Sbjct: 144 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHAVSLPPRAS 197
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVI-RHFADKIPGFSDLCKEDQELLFQSASLEL 207
P L P PE++ L+ R F+D++
Sbjct: 198 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNQRSFSDRL---------------------- 233
Query: 208 FYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 263
P P+ P E QQ F L SV I FA ++PGF L +EDQ L ++
Sbjct: 234 -RVTPWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKT 292
Query: 264 ASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEID 322
+++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 293 SAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLN 352
Query: 323 ISAFACLCALTLI 335
+ FA L A+++
Sbjct: 353 DAEFALLIAISIF 365
>gi|213623600|gb|AAI69954.1| Retinoic acid receptor alpha [Xenopus laevis]
gi|213625161|gb|AAI69958.1| Retinoic acid receptor alpha [Xenopus laevis]
Length = 448
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 128/293 (43%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 77 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 136
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K ++ EPP +
Sbjct: 137 CFEVGMSKESVRNDRNKKKK--------------------------------EPPKVD-- 162
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
+ + Y L + D+I K +E L + + E +
Sbjct: 163 -VMESYVLSPETQDLIEKVR----------KAHKETFPALCQLGKYTTNFSSEERVSLDI 211
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+ +F L T + FA ++PGF+ L DQ L +SA L++ +LR+ R +
Sbjct: 212 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKSACLDILILRICTRYTPDQD 271
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 272 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 324
>gi|355845815|gb|AET06182.1| retinoid-X receptor [Callinectes sapidus]
Length = 399
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 134/295 (45%), Gaps = 61/295 (20%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C +++C +DKR+RNRCQ+CR+
Sbjct: 72 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRY 131
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + + + +S + P++ I RE PI E
Sbjct: 132 QKCLSMGMKREAVQEERQRTKGDKGDGDTESSCGAISDMPIASI----REAELSVDPIDE 187
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
Q DV+ S++C+ L Q
Sbjct: 188 QPLDQG---------DVV----------SNICQAADRHLVQ------------------- 209
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ +A IP F+DL EDQ +L ++ EL + ++R+
Sbjct: 210 ------------------LVEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSIGV 251
Query: 281 DTKLIFCNGVVLEKQQC-QRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ ++ G+V+ + Q G + + E + M++D + CL A+ L
Sbjct: 252 EDGIVLATGLVVHRSSAHQAGVGAIFDRVLSELVSKMKEMKMDKTELGCLRAIVL 306
>gi|402893627|ref|XP_003909993.1| PREDICTED: oxysterols receptor LXR-alpha isoform 3 [Papio anubis]
Length = 402
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 149/313 (47%), Gaps = 41/313 (13%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D
Sbjct: 39 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMD 98
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + VSL
Sbjct: 99 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHAVSLPPRAS 152
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVI-RHFADKIPGFSDLCKEDQELLFQSASLEL 207
P L P PE++ L+ R F+D++
Sbjct: 153 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNQRSFSDRL---------------------- 188
Query: 208 FYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 263
P P+ P E QQ F L SV I FA ++PGF L +EDQ L ++
Sbjct: 189 -RVTPWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKT 247
Query: 264 ASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEID 322
+++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 248 SAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLN 307
Query: 323 ISAFACLCALTLI 335
+ FA L A+++
Sbjct: 308 DAEFALLIAISIF 320
>gi|148224349|ref|NP_001081663.1| retinoic acid receptor gamma [Xenopus laevis]
gi|1839486|gb|AAB47115.1| retinoic acid receptor gamma isoform 2.1 [Xenopus laevis]
Length = 442
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 130/295 (44%), Gaps = 48/295 (16%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQFCR QK
Sbjct: 76 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQK 135
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C QVGM KE +++ R + + K P S Y P +E I +
Sbjct: 136 CFQVGMSKE-----AVRNDRNKKKKEIKEEVVLPDS---------YEMPPEMEELIQKVS 181
Query: 163 KIQQ--FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
K Q F SL AD Q L+L +
Sbjct: 182 KAHQETFPSLCQLGKYTTNSSAD-----------------QRVRLDLGLWD--------- 215
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+F L T + I FA ++PGF+ L DQ L +SA L++ +LR+ R E
Sbjct: 216 ------KFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPE 269
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 270 QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLEMDDTETGLLSAICLI 324
>gi|6601565|gb|AAF19032.1|AF210733_1 ecdysteroid receptor [Aedes albopictus]
Length = 680
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 142/317 (44%), Gaps = 26/317 (8%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
PTP +LC VCGD A+ HY TCEGCKGFF+R+V K + Y C AC +D R
Sbjct: 181 PTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKNAVYCCKFGHACEMDMYMRR 240
Query: 94 RCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYR---- 149
+CQ CR +KCL VGM E V ++ + + K + + VS + YR
Sbjct: 241 KCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDKVQTNATVSTTNSTYRSEIL 300
Query: 150 ------EPNPLEPPIAEPEKIQQ-----FYSLLTTS-VDVIRHFADKIPGFSDLCKEDQE 197
+P P + PEK+ Q LLT + + VI G+ +ED +
Sbjct: 301 PILMKCDPPPHQAIPLLPEKLLQENRLRNIPLLTANQMAVIYKLIWYQDGYEQPSEEDLK 360
Query: 198 LLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 257
+ + P E + + +V +I FA +P F+ + +EDQ
Sbjct: 361 RIMIGS----------PNEEEDQHDVHFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQ 410
Query: 258 ELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLH 317
L ++ S E+ +LR+A R A ++F N + + + D + +L FC+ +
Sbjct: 411 ITLLKACSSEVMMLRMARRYDAATDSILFANNRSYTRDSYRMAGMADTIEDLLHFCRQMF 470
Query: 318 LMEIDISAFACLCALTL 334
+ +D +A L A+ +
Sbjct: 471 SLTVDNVEYALLTAIVI 487
>gi|1839488|gb|AAB47116.1| retinoic acid receptor gamma isoform 2.2 [Xenopus laevis]
Length = 442
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 130/295 (44%), Gaps = 48/295 (16%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQFCR QK
Sbjct: 76 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQK 135
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C QVGM KE +++ R + + K P S Y P +E I +
Sbjct: 136 CFQVGMSKE-----AVRNDRNKKKKEIKEEVVLPDS---------YEMPPEMEELIQKVS 181
Query: 163 KIQQ--FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
K Q F SL AD Q L+L +
Sbjct: 182 KAHQETFPSLCQLGKYTTNSSAD-----------------QRVRLDLGLWD--------- 215
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+F L T + I FA ++PGF+ L DQ L +SA L++ +LR+ R E
Sbjct: 216 ------KFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPE 269
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 270 QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLEMDDTETGLLSAICLI 324
>gi|308756033|gb|ADO51071.1| estrogen-related receptor [Tachypleus tridentatus]
Length = 470
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 138/307 (44%), Gaps = 66/307 (21%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C ++KRRR CQ C
Sbjct: 132 PKRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQAC 191
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGR-------LPSKPKSPQESPPSPPVSLITALYR-E 150
RFQKCL++GM+KE VR D ++G R + L + P + P L+ AL E
Sbjct: 192 RFQKCLKMGMLKEGVRLDRVRGGRQKYRRSADHLCNVPSLTLKKPSLEENKLLLALINCE 251
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYR 210
P EP+ +S+ + VI +D + D+EL+
Sbjct: 252 P--------EPQVAVVNHSITDSQTRVITTLSDLV---------DKELVATIG------- 287
Query: 211 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFV 270
+A +IPGF++L DQ L Q++ E+
Sbjct: 288 -------------------------------WAKQIPGFTELTLNDQMRLLQTSWAEILA 316
Query: 271 LRLAYRTRAEDT---KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFA 327
L LA R+R KL+F ++++QQ +D I++ + L+ + +
Sbjct: 317 LSLANRSRQLSGSLPKLMFSPDFIMDEQQACDCRAEDLFMHIIQLVLRIELVGMAHEEYL 376
Query: 328 CLCALTL 334
+ AL L
Sbjct: 377 LIKALLL 383
>gi|62460414|ref|NP_001014861.1| oxysterols receptor LXR-alpha [Bos taurus]
gi|75060925|sp|Q5E9B6.1|NR1H3_BOVIN RecName: Full=Oxysterols receptor LXR-alpha; AltName: Full=Liver X
receptor alpha; AltName: Full=Nuclear receptor subfamily
1 group H member 3
gi|59858373|gb|AAX09021.1| nuclear receptor subfamily 1, group H, member 3 [Bos taurus]
gi|73587432|gb|AAI03208.1| Nuclear receptor subfamily 1, group H, member 3 [Bos taurus]
gi|296479650|tpg|DAA21765.1| TPA: oxysterols receptor LXR-alpha [Bos taurus]
Length = 447
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 147/306 (48%), Gaps = 45/306 (14%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D R +CQ CR
Sbjct: 95 NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMDTYMRRKCQECR 154
Query: 100 FQKCLQVGMVKE-VVRTDSLKGRRGRLPSKPKSPQESPP----SPPVSLITALYREPNPL 154
+KC Q GM +E V+ + ++ ++ + + ++ S P SPP L
Sbjct: 155 LRKCRQAGMREECVLSEEQIRLKKMKRQEEEQAQATSAPPRASSPPQVL----------- 203
Query: 155 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNP 214
P PE++ L+ R FSD + P P
Sbjct: 204 --PQLSPEQLGMIEKLVAAQQLCNRR------SFSDQLRVT----------------PWP 239
Query: 215 LEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFV 270
+ P E QQ F L SV I FA ++PGF L +EDQ L +++++E+ +
Sbjct: 240 MAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVML 299
Query: 271 LRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACL 329
L + R + F ++ ++ +++N I EF ++++ ++++ + FA L
Sbjct: 300 LETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALL 359
Query: 330 CALTLI 335
A+++
Sbjct: 360 IAISIF 365
>gi|440903457|gb|ELR54112.1| Oxysterols receptor LXR-alpha [Bos grunniens mutus]
Length = 446
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 151/317 (47%), Gaps = 49/317 (15%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D
Sbjct: 83 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMD 142
Query: 89 KRRRNRCQFCRFQKCLQVGMVKE-VVRTDSLKGRRGRLPSKPKSPQESPP----SPPVSL 143
R +CQ CR +KC Q GM +E V+ + ++ ++ + + ++ S P SPP L
Sbjct: 143 TYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKMKRQEEEQAQATSAPPRASSPPQVL 202
Query: 144 ITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 203
P PE++ L+ R FSD +
Sbjct: 203 -------------PQLSPEQLGMIEKLVAAQQLCNRR------SFSDQLRVT-------- 235
Query: 204 SLELFYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQEL 259
P P+ P E QQ F L SV I FA ++PGF L +EDQ
Sbjct: 236 --------PWPMAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIA 287
Query: 260 LFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHL 318
L +++++E+ +L + R + F ++ ++ +++N I EF ++++
Sbjct: 288 LLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNE 347
Query: 319 MEIDISAFACLCALTLI 335
++++ + FA L A+++
Sbjct: 348 LQLNDAEFALLIAISIF 364
>gi|148229864|ref|NP_001083723.1| retinoic acid receptor, alpha [Xenopus laevis]
gi|836655|emb|CAA60791.1| retinoic acid receptor [Xenopus laevis]
Length = 448
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 128/293 (43%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 77 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 136
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D K ++ EPP +
Sbjct: 137 CFEVGMSKESVRNDRNKKKK--------------------------------EPPKVD-- 162
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
+ + Y L + D+I K +E L + + E +
Sbjct: 163 -VMESYVLSPETQDLIEKVR----------KAHKETFPALCQLGKYTTNFSSEERVSLDI 211
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+ +F L T + FA ++PGF+ L DQ L +SA L++ +LR+ R +
Sbjct: 212 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKSACLDILILRICTRYTPDQD 271
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 272 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 324
>gi|157123685|ref|XP_001660279.1| ecdysone receptor [Aedes aegypti]
gi|108874304|gb|EAT38529.1| AAEL009600-PA, partial [Aedes aegypti]
Length = 522
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 142/317 (44%), Gaps = 26/317 (8%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
PTP +LC VCGD A+ HY TCEGCKGFF+R+V K + Y C AC +D R
Sbjct: 28 PTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKNAVYCCKFGHACEMDMYMRR 87
Query: 94 RCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYR---- 149
+CQ CR +KCL VGM E V ++ + + K + + VS + YR
Sbjct: 88 KCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDKVQTNATVSTTNSTYRSEIL 147
Query: 150 ------EPNPLEPPIAEPEKIQQ-----FYSLLTTS-VDVIRHFADKIPGFSDLCKEDQE 197
+P P + PEK+ Q LLT + + VI G+ +ED +
Sbjct: 148 PILMKCDPPPHQAIPLLPEKLLQENRLRNIPLLTANQMAVIYKLIWYQDGYEQPSEEDLK 207
Query: 198 LLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 257
+ + P E + + +V +I FA +P F+ + +EDQ
Sbjct: 208 RIMIGS----------PNEEEDQHDVHFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQ 257
Query: 258 ELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLH 317
L ++ S E+ +LR+A R A ++F N + + + D + +L FC+ +
Sbjct: 258 ITLLKACSSEVMMLRMARRYDAATDSILFANNRSYTRDSYRMAGMADTIEDLLHFCRQMF 317
Query: 318 LMEIDISAFACLCALTL 334
+ +D +A L A+ +
Sbjct: 318 SLTVDNVEYALLTAIVI 334
>gi|5631312|dbj|BAA82618.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 363
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 99/177 (55%), Gaps = 8/177 (4%)
Query: 37 PSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQ 96
P +CAVCGD A+ +HYGV +CEGCKGFFKRTV+K Y C K C +DKR+RNRCQ
Sbjct: 10 PMAKHICAVCGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDSKDCVIDKRQRNRCQ 69
Query: 97 FCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPN---- 152
+CR+QKCL +GM +E V+ + K + + +P +P + P + L L +P
Sbjct: 70 YCRYQKCLAMGMKREAVQEERQKNKE-KEDGEPANPNDDMPVDKI-LEAELISDPKVEQV 127
Query: 153 -PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P E + E + + + + +A +IP FS L EDQ +L ++ EL
Sbjct: 128 VPFE-QVNENDPVSNICKAADRQLVTLVEWAKRIPHFSSLPLEDQVILLRAGWNELL 183
>gi|410973685|ref|XP_003993278.1| PREDICTED: oxysterols receptor LXR-alpha isoform 1 [Felis catus]
Length = 447
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 153/328 (46%), Gaps = 49/328 (14%)
Query: 27 PGCDT----------SRPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQ 72
PG DT R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V
Sbjct: 68 PGVDTPPESTELRPQKRKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVI 127
Query: 73 KGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSP 132
KG++YVC + CP+D R +CQ CR +KC Q GM +E V ++ + R +L + +
Sbjct: 128 KGARYVCHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEE-QIRLKKLKRQEEEQ 186
Query: 133 QESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 192
++ PP + P L P PE+ L+ R FSD
Sbjct: 187 AQATSMPP-----RVSSPPQVL--PQLSPEQRGMIEKLVAAQQQCNRR------SFSDRL 233
Query: 193 KEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPG 248
+ P P+ P E QQ F L SV I FA ++PG
Sbjct: 234 RVT----------------PWPMAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPG 277
Query: 249 FSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLN 307
F L +EDQ L +++++E+ +L + R + F ++ ++ +++N
Sbjct: 278 FLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFIN 337
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
I EF ++++ ++++ + FA L A+++
Sbjct: 338 PIFEFSRAMNELQLNDAEFALLIAISIF 365
>gi|62526619|gb|AAX84684.1| thyroid receptor alpha-1 [Carassius auratus]
Length = 466
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 141/296 (47%), Gaps = 27/296 (9%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSK--YVCLADKACPVDKRRRNRCQFCRF 100
C VCGD A HY TCEGCKGFF+RT+QK Y C D C +DK RN+CQ CRF
Sbjct: 51 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYDSCCIIDKITRNQCQLCRF 110
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ +GM ++V DS + + RL + + ++ ++ L+ P EP ++E
Sbjct: 111 KKCISMGMAMDLVLDDSKRVAKRRLIEENRERKKKE-----EMVKTLHTRP---EPTVSE 162
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL-EPPI 219
+ L+ + RH + P + K E + QS P P +
Sbjct: 163 -------WELIRMVTEAHRHTNAQGPHWKQKRKFLPEDIGQS---------PAPTSDNDK 206
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
+ E +F ++T ++ + FA K+P FS+L EDQ +L + +E+ LR A R
Sbjct: 207 VDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDP 266
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
E L + + ++Q + +AI + +SL +D S A L A+ L+
Sbjct: 267 ESETLTLSGEMAVSREQLKNGGLGVVSDAIFDLGKSLSQFNLDDSEVALLQAVLLM 322
>gi|225858|prf||1401244A thyroid/steroid receptor related gene
Length = 448
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 129/293 (44%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNHIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VG KE VR D K + K S QE S Y L+ +
Sbjct: 141 CFEVGHSKESVRNDRNKKK------KETSKQECTES---------YEMTAELDDLTEKIR 185
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + SA + L+ + +
Sbjct: 186 KAHQ-------------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|195984197|gb|ACG63787.1| retinoid X receptor splice variant RXR-I [Carcinus maenas]
Length = 402
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 114/205 (55%), Gaps = 15/205 (7%)
Query: 17 SAPLSSASSSPGCDTSRPT--PPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKR 69
++P + SS+ ++ PT PPS LC++CGD A+ +HYGV +CEGCKGFFKR
Sbjct: 41 TSPFTIGSSNTSGLSTSPTQYPPSHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKR 100
Query: 70 TVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRT-----DSLKGRRGR 124
TV+K Y C +++C +DKR+RNRCQ+CR+QKCL +GM +E V+T KG +G
Sbjct: 101 TVRKDLTYACREERSCTIDKRQRNRCQYCRYQKCLSMGMKREAVQTFQEERQRTKGDKG- 159
Query: 125 LPSKPKSPQESPPSPPVSLITALYREPNPL-EPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
+S + P++ I +P+ E P+ + + + + + +A
Sbjct: 160 -DGDTESSCGAISDMPIASIREAELSVDPIDEQPLDQGDVVSNICQAADRHLVQLVEWAK 218
Query: 184 KIPGFSDLCKEDQELLFQSASLELF 208
IP F+DL EDQ +L ++ EL
Sbjct: 219 HIPHFTDLPIEDQVVLLKAGWNELL 243
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC-QRS 300
+A IP F+DL EDQ +L ++ EL + ++R+ + ++ G+V+ + Q
Sbjct: 216 WAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVVHRSSAHQAG 275
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 276 VGAIFDRVLSELVAKVKEMKMDKTELGCLRAIVL 309
>gi|726513|gb|AAA85856.1| nuclear orphan receptor LXR-alpha [Homo sapiens]
Length = 447
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 147/312 (47%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ Y+C + CP+D
Sbjct: 84 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGHCPMD 143
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ + R +L + + + PP
Sbjct: 144 TYMRRKCQECRLRKCRQAGMREECVLSEE-QIRLKKLKRQEEEQAHATSLPP-------R 195
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
R P P PE++ L+ R FSD +
Sbjct: 196 RSSPPQILPQLSPEQLGMIEKLVAAQQQCNRR------SFSDRLRVT------------- 236
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 237 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 293
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 294 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 353
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 354 AEFALLIAISIF 365
>gi|403183046|gb|EJY57810.1| AAEL009600-PB, partial [Aedes aegypti]
Length = 521
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 142/317 (44%), Gaps = 26/317 (8%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
PTP +LC VCGD A+ HY TCEGCKGFF+R+V K + Y C AC +D R
Sbjct: 27 PTPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKNAVYCCKFGHACEMDMYMRR 86
Query: 94 RCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYR---- 149
+CQ CR +KCL VGM E V ++ + + K + + VS + YR
Sbjct: 87 KCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDKVQTNATVSTTNSTYRSEIL 146
Query: 150 ------EPNPLEPPIAEPEKIQQ-----FYSLLTTS-VDVIRHFADKIPGFSDLCKEDQE 197
+P P + PEK+ Q LLT + + VI G+ +ED +
Sbjct: 147 PILMKCDPPPHQAIPLLPEKLLQENRLRNIPLLTANQMAVIYKLIWYQDGYEQPSEEDLK 206
Query: 198 LLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 257
+ + P E + + +V +I FA +P F+ + +EDQ
Sbjct: 207 RIMIGS----------PNEEEDQHDVHFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQ 256
Query: 258 ELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLH 317
L ++ S E+ +LR+A R A ++F N + + + D + +L FC+ +
Sbjct: 257 ITLLKACSSEVMMLRMARRYDAATDSILFANNRSYTRDSYRMAGMADTIEDLLHFCRQMF 316
Query: 318 LMEIDISAFACLCALTL 334
+ +D +A L A+ +
Sbjct: 317 SLTVDNVEYALLTAIVI 333
>gi|391327316|ref|XP_003738149.1| PREDICTED: nuclear hormone receptor E75-like [Metaseiulus
occidentalis]
Length = 667
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 151/305 (49%), Gaps = 38/305 (12%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 59 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCAILRINRNRCQYCRL 118
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYR-EPNPLEPPIA 159
+KC+ VGM ++ VR GR+P + K+ ++ A+ + + E ++
Sbjct: 119 KKCIGVGMSRDAVRF-------GRVPKREKA----------KILAAMQKVNASSQEKQLS 161
Query: 160 E--PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN---- 213
++++ F S++ + +DKI + + D ++ R P+
Sbjct: 162 AELEDEMRLFQSVVQAHEETCEFTSDKIAPMIERARVD----------PVYARCPSGLAC 211
Query: 214 PLEP--PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVL 271
PL P P ++ F + ++ + FA +IPGFS L +EDQ L ++ E+ ++
Sbjct: 212 PLNPQSPDGTNRFMEDFSERFSPAIRGVVEFAKRIPGFSLLAQEDQVTLLKAGVFEVLLV 271
Query: 272 RLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDW-LNAILEFCQSLHLMEIDISAFACLC 330
RLA + ++I NG VL + S + L+++ EF + ++ + + A
Sbjct: 272 RLARLFDSATNQMITLNGQVLRRDSLHSSSNARFLLDSMFEFAERMNSVGLSDPQIAIFS 331
Query: 331 ALTLI 335
A +I
Sbjct: 332 ATVII 336
>gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-A;
AltName: Full=RXRalpha-B; AltName: Full=Retinoid X
receptor alpha-A
Length = 430
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 137/295 (46%), Gaps = 53/295 (17%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 101 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRY 160
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + R R + ++ ES T+ E P+E I E
Sbjct: 161 QKCLAMGMKREAVQEE-----RQRAKERSENEVES---------TSSANEDMPVEK-ILE 205
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
E L + +P S+ + + Q+A +LF
Sbjct: 206 AE--------LAVEPKTETYIETNVPMPSNSPNDPVTNICQAADKQLF------------ 245
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ +A +IP FS+L +DQ +L ++ EL + ++R+ A
Sbjct: 246 -----------------TLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV 288
Query: 281 DTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ G+ + + + G + + E + M++D + CL A+ L
Sbjct: 289 KDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 343
>gi|6015120|sp|P81559.1|ESR1_XENLA RecName: Full=Estrogen receptor; Short=ER; AltName: Full=ER-alpha;
AltName: Full=Estradiol receptor; AltName: Full=Nuclear
receptor subfamily 3 group A member 1
Length = 586
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 154/332 (46%), Gaps = 35/332 (10%)
Query: 7 SSSESPKLRHSAPLSSASSS--PGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCK 64
SSS++ + +SSA+ P ++++ T + CAVC D A+ HYGV +CEGCK
Sbjct: 147 SSSDNRRQSGRERMSSANDKGPPSMESTKET-----RYCAVCSDYASGYHYGVWSCEGCK 201
Query: 65 GFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGR 124
FFKR++Q + Y+C A C +DK RR CQ CR +KC +VGM+K +R D R GR
Sbjct: 202 AFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDR---RGGR 258
Query: 125 LPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 184
L + +E V +P +I+ + SV + K
Sbjct: 259 LLKHKRQKEEQEQKNDV------------------DPSEIRTASIWVNPSVKSM-----K 295
Query: 185 IPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 244
+ L E A + Y E + +P ++E + +L + + ++A
Sbjct: 296 LSPVLSLTAEQLISALMEAEAPIVYSEHDSTKP-LSEASMMTLLTNLADRELVHMINWAK 354
Query: 245 KIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG-D 303
++PGF DL DQ L + A LE+ ++ L +R+ KL F ++L++ Q + G
Sbjct: 355 RVPGFVDLTLHDQVHLLECAWLEILMVGLIWRSVEHPGKLSFAPNLLLDRNQGRCVEGLV 414
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + ++ +M + F CL ++ L+
Sbjct: 415 EIFDMLVTTATRFRMMRLRGEEFICLKSIILL 446
>gi|281340487|gb|EFB16071.1| hypothetical protein PANDA_010593 [Ailuropoda melanoleuca]
Length = 433
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 147/312 (47%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D
Sbjct: 70 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMD 129
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + S+ +
Sbjct: 130 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAQATSVTPRVS 183
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P L P PE+ L+ R FSD +
Sbjct: 184 SPPQVL--PQLSPEQWGMIEKLVAAQQQCNRR------SFSDRLRVT------------- 222
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 223 ---PWPVAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 279
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 280 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 339
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 340 AEFALLIAISIF 351
>gi|28558767|sp|P28699.2|RARG_XENLA RecName: Full=Retinoic acid receptor gamma; Short=RAR-gamma;
AltName: Full=Nuclear receptor subfamily 1 group B
member 3
Length = 476
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 130/295 (44%), Gaps = 48/295 (16%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQFCR QK
Sbjct: 110 CFVCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQFCRLQK 169
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C QVGM K ++++ R + + K P S Y P +E I +
Sbjct: 170 CFQVGMSK-----EAVRNDRNKKKKEIKEEVVLPDS---------YEMPPEMEELIQKVS 215
Query: 163 KIQQ--FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
K Q F SL AD Q L+L +
Sbjct: 216 KAHQETFPSLCQLGKYTTNSSAD-----------------QRVQLDLGLWD--------- 249
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+F L T + I FA ++PGF+ L DQ L +SA L++ +LR+ R E
Sbjct: 250 ------KFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPE 303
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 304 QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFSFADQLLPLEMDDTETGLLSAICLI 358
>gi|345496190|ref|XP_001604033.2| PREDICTED: steroid hormone receptor ERR2 isoform 1 [Nasonia
vitripennis]
Length = 438
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A+ C ++KRRR CQ C
Sbjct: 109 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPANGECEINKRRRKACQAC 168
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRG--RLPSKPKSPQESPPSPPVSLITALYR-EPNPLE 155
RFQKCL+ GM+KE VR D ++G R R + P P ++ ++ AL EP+ L+
Sbjct: 169 RFQKCLRQGMLKEGVRLDRVRGGRQKYRRSTDPYVPGKTITLEDNKMVEALISCEPDMLQ 228
Query: 156 PPI------AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + Q L + I +A +IPGFS L DQ L QS E+
Sbjct: 229 VSTLSHTLDTDQRVLGQLSDLYDRELVGIIGWAKQIPGFSSLPLNDQMRLLQSTWAEIL 287
>gi|218156236|dbj|BAH03350.1| retinoic acid receptor 3 [Mordacia mordax]
Length = 407
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 133/288 (46%), Gaps = 45/288 (15%)
Query: 48 DIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVG 107
D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR Q+CL+VG
Sbjct: 2 DKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKKCIINKITRNRCQYCRLQRCLEVG 61
Query: 108 MVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQF 167
M KE VR D K ++ + +P+ + PP P + +
Sbjct: 62 MSKESVRNDRSKKKKEAV--RPEVLEVPPPCPEIEDL----------------------- 96
Query: 168 YSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQ 227
+D +R + F LC+ + + S + + N + +
Sbjct: 97 -------IDRVRRAHQET--FPSLCQLGK-YTTSNGSGQRVTLDANLWD----------K 136
Query: 228 FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFC 287
F L T + FA +IPGFS L +DQ L ++A L++ +LR+ R E + F
Sbjct: 137 FSELSTKCIVKTVEFAKRIPGFSTLGIDDQITLLKAACLDILILRICTRYTPEHDTMTFS 196
Query: 288 NGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+G+ L + Q + + + F L +E+D + L ++ LI
Sbjct: 197 DGLTLNRTQMHNAGFGPLTDLVFAFAAQLLPLEMDDTEAGLLSSICLI 244
>gi|301772520|ref|XP_002921678.1| PREDICTED: oxysterols receptor LXR-alpha-like [Ailuropoda
melanoleuca]
Length = 447
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 147/312 (47%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D
Sbjct: 84 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMD 143
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + S+ +
Sbjct: 144 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAQATSVTPRVS 197
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P L P PE+ L+ R FSD +
Sbjct: 198 SPPQVL--PQLSPEQWGMIEKLVAAQQQCNRR------SFSDRLRVT------------- 236
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 237 ---PWPVAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 293
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 294 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 353
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 354 AEFALLIAISIF 365
>gi|426368191|ref|XP_004051094.1| PREDICTED: oxysterols receptor LXR-alpha isoform 4 [Gorilla gorilla
gorilla]
gi|426368193|ref|XP_004051095.1| PREDICTED: oxysterols receptor LXR-alpha isoform 5 [Gorilla gorilla
gorilla]
Length = 453
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 146/312 (46%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ YVC + CP+D
Sbjct: 90 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYVCHSGGHCPMD 149
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 150 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSLPPRAS 203
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P L P PE++ L+ R FSD +
Sbjct: 204 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNRR------SFSDRLRVT------------- 242
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 243 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 299
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 300 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 359
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 360 AEFALLIAISIF 371
>gi|348523019|ref|XP_003449021.1| PREDICTED: estrogen-related receptor gamma-like [Oreochromis
niloticus]
Length = 476
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 131/304 (43%), Gaps = 59/304 (19%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
P +LC VCGD A+ HYGV +CE CK FFKRT+Q +Y C C + KRRR CQ
Sbjct: 143 GPKRLCLVCGDFASGYHYGVASCEACKAFFKRTIQGNIEYSCPVMNECEITKRRRKACQA 202
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKCLQ GM++E VR D ++G R + + + +SL T + P
Sbjct: 203 CRFQKCLQAGMMREGVRLDRVRGGRQKYKRRVDTG--------LSLCT---------KAP 245
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEP 217
+ P ++ VI H L EP PL
Sbjct: 246 YSHPS---------SSRNKVISH--------------------------LLLTEPAPLAA 270
Query: 218 PIAEPEKIQQFYSLLTT------SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVL 271
LLT + V+ +A +IPGFS L DQ L QS +E ++
Sbjct: 271 NQDNSTNDSSLRILLTLCDLLNRELLVLIGWAKQIPGFSGLLLVDQMSLLQSGWMEALLV 330
Query: 272 RLAYRTR-AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLC 330
+A+R++ A +L+F + L++ QC+ + D A+ M++ L
Sbjct: 331 GVAWRSQGAGGDELVFAGNLRLDEAQCRATGLADLYEALRHLMAKYRAMKLSPEEVVTLK 390
Query: 331 ALTL 334
A+ L
Sbjct: 391 AMAL 394
>gi|154818393|gb|ABS87677.1| estrogen receptor alpha [Tanichthys albonubes]
Length = 607
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 142/304 (46%), Gaps = 41/304 (13%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + YVC A C +D+ RR CQ CR
Sbjct: 196 TRFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYVCPATNQCTIDRNRRKSCQACR 255
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D +G R +P+S S+ Y E
Sbjct: 256 LRKCYEVGMMKGGIRKD--RGGRTIRRERPRS----------SIEEKSYSE--------- 294
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE-DQELLFQSASLELFYREPNPL--- 215
Q + L T+ D R + S LC DQ L+ L EP +
Sbjct: 295 -----QSSRAGLRTAQDK-RKKSSSGGMVSALCMPPDQVLML------LLGAEPPAVCSR 342
Query: 216 ---EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
PP E + ++ + + +A K+PGF DL DQ L +S+ LE+ ++
Sbjct: 343 QKHSPPYTEITMMSLLTNMADKELVHMIAWAKKVPGFQDLSLHDQVQLLESSWLEVLMIG 402
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISAFACLCA 331
L +R+ KLIF ++L++ + + G + + +L +++ + F CL A
Sbjct: 403 LIWRSIHSPGKLIFAQDLILDRSEGECVEGMAEIFDMLLATVARFRSLKLKLEEFVCLKA 462
Query: 332 LTLI 335
+ L+
Sbjct: 463 IILL 466
>gi|50950046|emb|CAH10551.1| hypothetical protein [Homo sapiens]
Length = 156
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/64 (90%), Positives = 61/64 (95%)
Query: 69 RTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSK 128
RTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQKCL VGMVKEVVRTDSLKGRRGRLPSK
Sbjct: 1 RTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGRLPSK 60
Query: 129 PKSP 132
PKSP
Sbjct: 61 PKSP 64
>gi|170033431|ref|XP_001844581.1| ecdysone receptor [Culex quinquefasciatus]
gi|167874319|gb|EDS37702.1| ecdysone receptor [Culex quinquefasciatus]
Length = 528
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 149/347 (42%), Gaps = 29/347 (8%)
Query: 4 GRSSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
GR S S L S + P PTP +LC VCGD A+ HY TCEGC
Sbjct: 27 GREDLSPSSSLN---GYSGDGNDPKKQKKGPTPRQQEELCLVCGDRASGYHYNALTCEGC 83
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
KGFF+R+V K + Y C AC +D R +CQ CR +KCL VGM E V ++ +
Sbjct: 84 KGFFRRSVTKNAVYCCKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAIKR 143
Query: 124 RLPSKPKSPQESPPSPPVSLITALYR-EPNPL----EPP-----------IAEPEKIQQF 167
+ K + + VS + Y+ E P+ +PP + +++
Sbjct: 144 KEKKAQKEKDKVQTTATVSTTNSTYKSEILPILMKCDPPPHAAIPLLPEKLLNENRLRNI 203
Query: 168 YSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQ 227
L + VI G+ +ED + + + P E +
Sbjct: 204 PPLTANQMAVIYKLIWYQDGYEQPSEEDLKRIMIGS----------PNEEEDQHDVHFRH 253
Query: 228 FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFC 287
+ +V +I FA +P F+ + +EDQ L ++ S E+ +LR+A R A ++F
Sbjct: 254 ITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDAATDSILFA 313
Query: 288 NGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
N + + + D + +L FC+ ++ + +D +A L A+ +
Sbjct: 314 NNRSYTRDSYRMAGMADTIEDLLHFCRQMYSLTVDNVEYALLTAIVI 360
>gi|395742823|ref|XP_003777822.1| PREDICTED: oxysterols receptor LXR-alpha [Pongo abelii]
gi|395742825|ref|XP_003777823.1| PREDICTED: oxysterols receptor LXR-alpha [Pongo abelii]
Length = 453
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 148/313 (47%), Gaps = 41/313 (13%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D
Sbjct: 90 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMD 149
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 150 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSLPPRAS 203
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVI-RHFADKIPGFSDLCKEDQELLFQSASLEL 207
P L P PE++ L+ R F+D++
Sbjct: 204 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNQRSFSDRL---------------------- 239
Query: 208 FYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 263
P P+ P E QQ F L SV I FA ++PGF L +EDQ L ++
Sbjct: 240 -RVTPWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKT 298
Query: 264 ASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEID 322
+++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 299 SAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLN 358
Query: 323 ISAFACLCALTLI 335
+ FA L A+++
Sbjct: 359 DAEFALLIAISIF 371
>gi|426368189|ref|XP_004051093.1| PREDICTED: oxysterols receptor LXR-alpha isoform 3 [Gorilla gorilla
gorilla]
Length = 402
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 146/312 (46%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ YVC + CP+D
Sbjct: 39 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYVCHSGGHCPMD 98
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 99 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSLPPRAS 152
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P L P PE++ L+ R FSD +
Sbjct: 153 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNRR------SFSDRLRVT------------- 191
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 192 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 248
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 249 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 308
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 309 AEFALLIAISIF 320
>gi|216409704|dbj|BAH02289.1| liver X receptor alpha [Homo sapiens]
Length = 447
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 146/312 (46%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ YVC + CP+D
Sbjct: 84 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYVCHSGGHCPMD 143
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 144 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSLPPRAS 197
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P L P PE++ L+ R FSD +
Sbjct: 198 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNRR------SFSDRLRVT------------- 236
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 237 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 293
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 294 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 353
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 354 AEFALLIAISIF 365
>gi|259906648|gb|ACW84414.1| estrogen receptor-like protein [Teleogryllus emma]
Length = 401
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 101/186 (54%), Gaps = 15/186 (8%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C ++KRRR CQ
Sbjct: 66 GPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPAANDCEINKRRRKACQA 125
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRG---RLPSKPKSPQESPPSPPVSL-----ITALYR 149
CRFQKCL++GM+KE VR D ++G R R P P Q P P +SL + AL
Sbjct: 126 CRFQKCLRMGMLKEGVRLDRVRGGRQKYRRNPDLPYQVQAFMPRPVLSLDENKMLKALTS 185
Query: 150 -EPNPL----EPPIAEPE--KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 202
EP+ L + I + E + L + + +A IPGF++L DQ L QS
Sbjct: 186 CEPDLLLASPDTSIVDLELRVVSTLSDLYDRELVGVISWAKLIPGFTELTLNDQMRLLQS 245
Query: 203 ASLELF 208
E+
Sbjct: 246 TWAEIL 251
>gi|57100151|ref|XP_540745.1| PREDICTED: oxysterols receptor LXR-alpha isoform 2 [Canis lupus
familiaris]
Length = 447
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 150/328 (45%), Gaps = 49/328 (14%)
Query: 27 PGCDT----------SRPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQ 72
PG DT R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V
Sbjct: 68 PGVDTPPESAELRPQKRKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVI 127
Query: 73 KGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSP 132
KG+ YVC + CP+D R +CQ CR +KC Q GM +E V ++ ++ K
Sbjct: 128 KGAHYVCHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKR 181
Query: 133 QESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 192
QE + S+ + P L P PE+ L+ R FSD
Sbjct: 182 QEEEQAQATSMPPRVSSPPQVL--PQLSPEQRGMIEKLVAAQQQCNRR------SFSDRL 233
Query: 193 KEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPG 248
+ P P+ P E QQ F L SV I FA ++PG
Sbjct: 234 RVT----------------PWPMAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPG 277
Query: 249 FSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLN 307
F L +EDQ L +++++E+ +L + R + F ++ ++ +++N
Sbjct: 278 FLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFIN 337
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
I EF ++++ ++++ + FA L A+++
Sbjct: 338 PIFEFSRAMNELQLNDAEFALLIAISIF 365
>gi|297688797|ref|XP_002821861.1| PREDICTED: oxysterols receptor LXR-alpha isoform 1 [Pongo abelii]
Length = 447
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 148/313 (47%), Gaps = 41/313 (13%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D
Sbjct: 84 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMD 143
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 144 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSLPPRAS 197
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVI-RHFADKIPGFSDLCKEDQELLFQSASLEL 207
P L P PE++ L+ R F+D++
Sbjct: 198 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNQRSFSDRL---------------------- 233
Query: 208 FYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 263
P P+ P E QQ F L SV I FA ++PGF L +EDQ L ++
Sbjct: 234 -RVTPWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKT 292
Query: 264 ASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEID 322
+++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 293 SAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLN 352
Query: 323 ISAFACLCALTLI 335
+ FA L A+++
Sbjct: 353 DAEFALLIAISIF 365
>gi|426368185|ref|XP_004051091.1| PREDICTED: oxysterols receptor LXR-alpha isoform 1 [Gorilla gorilla
gorilla]
Length = 447
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 146/312 (46%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ YVC + CP+D
Sbjct: 84 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYVCHSGGHCPMD 143
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 144 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSLPPRAS 197
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P L P PE++ L+ R FSD +
Sbjct: 198 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNRR------SFSDRLRVT------------- 236
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 237 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 293
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 294 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 353
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 354 AEFALLIAISIF 365
>gi|195012346|ref|XP_001983597.1| GH15984 [Drosophila grimshawi]
gi|193897079|gb|EDV95945.1| GH15984 [Drosophila grimshawi]
Length = 491
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 125/264 (47%), Gaps = 23/264 (8%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A+ C ++KRRR CQ CRF
Sbjct: 116 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPANNECEINKRRRKACQACRF 175
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSP---------QESPPSP-PVSLITALYRE 150
QKCL +GM+KE VR D ++G R + P S Q S S V ++ L
Sbjct: 176 QKCLLMGMLKEGVRLDRVRGGRQKYRRNPVSNSYQTMQLLYQSSTTSLCDVKILVVL--- 232
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYR 210
N EP + QQ ++ T S D+ S K + ++
Sbjct: 233 -NSYEPDTLSVQAQQQPHTTTTAS-----SCNDEASSSSGSIKLESSSNSTPNGTTCIFQ 286
Query: 211 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFV 270
N +P E + L + + +A +IPGF +L DQ L Q + E+
Sbjct: 287 NNNNNDPH----EILSVLSDLYDKELVCVIGWAKQIPGFMELPLNDQMKLLQVSWAEILT 342
Query: 271 LRLAYRTRAEDTKLIFCNGVVLEK 294
L+L +R+ + KL F V +++
Sbjct: 343 LQLTFRSLPFNGKLCFATDVWMDE 366
>gi|301611491|ref|XP_002935274.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 459
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 119/229 (51%), Gaps = 27/229 (11%)
Query: 4 GRSSSSESPKLRHSAPLSSASSS------PGCDTSRPTPPSPS--------QLCAVCGDI 49
G + SP++ +P++S SS+ PG + P PS +CA+CGD
Sbjct: 81 GLGFGTGSPQIH--SPMNSVSSTEDIKPPPGINGILKVPAHPSGPMASFTKHICAICGDR 138
Query: 50 AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMV 109
++ +HYGV +CEGCKGFFKRTV+K Y C K C +DKR+RNRCQ+CR+QKCL +GM
Sbjct: 139 SSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCMIDKRQRNRCQYCRYQKCLAMGMK 198
Query: 110 KEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIA 159
+E V+ + +G+ R ++ +S + PV I T Y E N P +
Sbjct: 199 REAVQEERQRGKE-RNENEVESSSSANEDMPVEKILDAEHAVEPKTETYIEANMGLAPNS 257
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 258 PSDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 306
>gi|144687066|gb|ABP02024.1| ecdysone response nuclear receptor E75A [Oncopeltus fasciatus]
Length = 690
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 147/301 (48%), Gaps = 28/301 (9%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC CGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 45 LCRACGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCAILRINRNRCQYCRL 104
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++ VR GR+P + K+ ++ A+ + N A
Sbjct: 105 KKCIAVGMSRDAVRF-------GRVPKREKA----------RILAAMQQSTNSKCQEKAV 147
Query: 161 PEKIQQFYSLLTTSV----DVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
+++ LL T V D DK+ +E +L PNP +
Sbjct: 148 AAELEDDGRLLKTVVRAHLDTCDFTRDKVAPMILRARECPSFTASPPTLACPL-NPNP-Q 205
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
P + E +Q F + ++ + FA +IPGFS L +EDQ L ++ E+ ++RLA
Sbjct: 206 PLTGQQELLQDFSKRFSPAIRGVVEFAKRIPGFSLLSQEDQVTLLKAGVFEVLLVRLACM 265
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWL-NAILEFCQ---SLHLMEIDISAFACLCAL 332
++ +I NG VL++ +L +++ +F + SL L + +I F+ + +
Sbjct: 266 FDTQNNSMICLNGQVLKRDSIHSGSNARFLMDSMFDFAERLNSLKLTDPEIGLFSSIVVI 325
Query: 333 T 333
Sbjct: 326 A 326
>gi|353731058|ref|NP_001238863.1| oxysterols receptor LXR-alpha isoform 4 [Homo sapiens]
gi|353731060|ref|NP_001238864.1| oxysterols receptor LXR-alpha isoform 4 [Homo sapiens]
gi|332836305|ref|XP_003313057.1| PREDICTED: oxysterols receptor LXR-alpha [Pan troglodytes]
gi|397488365|ref|XP_003815237.1| PREDICTED: oxysterols receptor LXR-alpha isoform 4 [Pan paniscus]
gi|397488367|ref|XP_003815238.1| PREDICTED: oxysterols receptor LXR-alpha isoform 5 [Pan paniscus]
gi|410045065|ref|XP_003951917.1| PREDICTED: oxysterols receptor LXR-alpha [Pan troglodytes]
gi|194378684|dbj|BAG63507.1| unnamed protein product [Homo sapiens]
Length = 453
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 146/312 (46%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ Y+C + CP+D
Sbjct: 90 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGHCPMD 149
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 150 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSLPPRAS 203
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P L P PE++ L+ R FSD +
Sbjct: 204 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNRR------SFSDRLRVT------------- 242
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 243 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 299
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 300 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 359
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 360 AEFALLIAISIF 371
>gi|432908545|ref|XP_004077914.1| PREDICTED: nuclear receptor subfamily 4 group A member 3-like
isoform 1 [Oryzias latipes]
Length = 590
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 90/132 (68%), Gaps = 3/132 (2%)
Query: 206 ELFYREPNPLEPPIA--EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 263
+L Y + + +PP A + E I FY LLT S++ R +A+++PGFSDL ++DQ LL S
Sbjct: 370 DLDYSQFSAADPPSASSDAEHIHLFYRLLTISMETTRCWAERLPGFSDLQRDDQNLLIDS 429
Query: 264 ASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDI 323
A LELFVLRLA+R+ + KL+ CNG+VL + QC R FG +WL++I +F L + +D
Sbjct: 430 AFLELFVLRLAHRSMLSEDKLVLCNGLVLHRFQCLRGFG-EWLDSIRDFSNHLQSLNLDA 488
Query: 324 SAFACLCALTLI 335
SAFACL AL L+
Sbjct: 489 SAFACLAALVLL 500
>gi|300953012|gb|ADK46937.1| nuclear receptor subfamily 1 group H member 3 [Capra hircus]
Length = 447
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 147/302 (48%), Gaps = 37/302 (12%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D R +CQ CR
Sbjct: 95 NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMDTYMRRKCQECR 154
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEP-PI 158
+KC Q GM +E V ++ + R +L + + ++ +PP R +P + P
Sbjct: 155 LRKCRQAGMREECVLSEE-QIRLKKLKRQEEEQAQATSAPP--------RASSPPQVLPQ 205
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
PE++ L+ R FSD + P P+ P
Sbjct: 206 LSPEQLGMIEKLVAAQQLCNRR------SFSDQLRVT----------------PWPMAPD 243
Query: 219 IAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
E QQ F L SV I FA ++PGF L +EDQ L +++++E+ +L +
Sbjct: 244 PQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETS 303
Query: 275 YRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALT 333
R + F ++ ++ +++N I EF ++++ ++++ + F L A++
Sbjct: 304 RRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFVLLIAIS 363
Query: 334 LI 335
+
Sbjct: 364 IF 365
>gi|194332487|ref|NP_001123685.1| retinoic acid receptor RXR-gamma [Sus scrofa]
gi|112820329|gb|ABI24018.1| retinoid X receptor gamma [Sus scrofa]
Length = 463
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 134/300 (44%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECASSGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 247 EPKTESYGDMNMENSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + ++D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDTQMDKSELGCLRAVVL 376
>gi|395742821|ref|XP_003777821.1| PREDICTED: oxysterols receptor LXR-alpha [Pongo abelii]
Length = 402
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 148/313 (47%), Gaps = 41/313 (13%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG++YVC + CP+D
Sbjct: 39 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGARYVCHSGGHCPMD 98
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 99 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSLPPRAS 152
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVI-RHFADKIPGFSDLCKEDQELLFQSASLEL 207
P L P PE++ L+ R F+D++
Sbjct: 153 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNQRSFSDRL---------------------- 188
Query: 208 FYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 263
P P+ P E QQ F L SV I FA ++PGF L +EDQ L ++
Sbjct: 189 -RVTPWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKT 247
Query: 264 ASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEID 322
+++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 248 SAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLN 307
Query: 323 ISAFACLCALTLI 335
+ FA L A+++
Sbjct: 308 DAEFALLIAISIF 320
>gi|1498152|dbj|BAA13143.1| retinoic acid receptor homologue [Polyandrocarpa misakiensis]
Length = 347
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 130/279 (46%), Gaps = 31/279 (11%)
Query: 61 EGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKG 120
EGCKGFF+R+VQK +Y C +K C ++K R+RCQ+CR QKC QVGM+KE VR D K
Sbjct: 1 EGCKGFFRRSVQKNMQYTCHRNKNCVINKSTRSRCQYCRLQKCFQVGMLKESVRNDRNK- 59
Query: 121 RRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH 180
+RG+ K+ SP P ++ PE I+ S+ V +
Sbjct: 60 KRGK-EKDGKTGDTSPSGQPEEIVVT--------------PE-IENIVSV------VAKA 97
Query: 181 FADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE----PPIAEPEKIQQFYSLLTTSV 236
D P DL K + L P P + PP + + +F L T S+
Sbjct: 98 HLDTFPKNEDLNKYNTAEGQGDKPLS----PPTPSDASGSPPPVDVKLWSKFSDLSTKSI 153
Query: 237 DVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ 296
I FA +PGF+DL DQ L +SA LE+ R+ R + + F +G+ L + Q
Sbjct: 154 IKIVEFAKSVPGFTDLTIADQITLLKSACLEILFFRICSRYDNSNDTMSFSDGLTLNRDQ 213
Query: 297 CQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + F +SL ++D + LCA+ L+
Sbjct: 214 LRNCAFGPMTEQVFGFAKSLTPFDLDHTEGGLLCAICLM 252
>gi|47226025|emb|CAG04399.1| unnamed protein product [Tetraodon nigroviridis]
Length = 689
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 127/294 (43%), Gaps = 47/294 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C +K C ++K RNRCQ+CR QK
Sbjct: 322 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQK 381
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL+VGM KE VR D N + +PE
Sbjct: 382 CLEVGMSKESVRNDR----------------------------------NKKKKDEKKPE 407
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA-E 221
I+ + T + R F LC+ + Y N E +A +
Sbjct: 408 CIENYVLSPDTEQMINRVRKAHQETFPSLCQLGK------------YTTTNSSERRVALD 455
Query: 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
+ +F L T + FA ++PGF L DQ L ++A L++ +LR+ R E
Sbjct: 456 VDLWDKFSELSTKCIIKTVEFAKQLPGFVTLTIADQITLLKAACLDILILRICTRYTPEQ 515
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ L+
Sbjct: 516 DTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLL 569
>gi|215024|gb|AAA50049.1| retinoic acid receptor alpha-2.A [Danio rerio]
Length = 444
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 133/294 (45%), Gaps = 47/294 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C +K C ++K RNRCQ+CR QK
Sbjct: 75 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQK 134
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL+VGM KE VR D + ++ + KP+ + SP +
Sbjct: 135 CLEVGMSKESVRND--RNKKKKEEKKPECTENYTLSPDTEQM------------------ 174
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA-E 221
+D +R + F LC+ + Y N E +A +
Sbjct: 175 ------------IDRVRKAHQET--FPSLCQLGK------------YTTSNSSERRVALD 208
Query: 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
+ +F L T + FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 209 VDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQ 268
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ L+
Sbjct: 269 DTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLL 322
>gi|194294519|ref|NP_001123574.1| oxysterols receptor LXR-alpha isoform 3 [Homo sapiens]
gi|114637488|ref|XP_001168367.1| PREDICTED: oxysterols receptor LXR-alpha isoform 11 [Pan
troglodytes]
gi|397488363|ref|XP_003815236.1| PREDICTED: oxysterols receptor LXR-alpha isoform 3 [Pan paniscus]
gi|27371228|gb|AAH41172.1| NR1H3 protein [Homo sapiens]
gi|119588348|gb|EAW67942.1| nuclear receptor subfamily 1, group H, member 3, isoform CRA_a
[Homo sapiens]
gi|119588354|gb|EAW67948.1| nuclear receptor subfamily 1, group H, member 3, isoform CRA_a
[Homo sapiens]
Length = 402
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 146/312 (46%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ Y+C + CP+D
Sbjct: 39 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGHCPMD 98
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 99 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSLPPRAS 152
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P L P PE++ L+ R FSD +
Sbjct: 153 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNRR------SFSDRLRVT------------- 191
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 192 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 248
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 249 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 308
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 309 AEFALLIAISIF 320
>gi|54695690|gb|AAV38217.1| nuclear receptor subfamily 1, group H, member 3 [synthetic
construct]
gi|60812258|gb|AAX36204.1| nuclear receptor subfamily 1 group H member 3 [synthetic construct]
gi|60827744|gb|AAX36811.1| nuclear receptor subfamily 1 group H member 3 [synthetic construct]
gi|61368385|gb|AAX43168.1| nuclear receptor subfamily 1 group H member 3 [synthetic construct]
Length = 448
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 146/312 (46%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ Y+C + CP+D
Sbjct: 84 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGHCPMD 143
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 144 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSLPPRAS 197
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P L P PE++ L+ R FSD +
Sbjct: 198 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNRR------SFSDRLRVT------------- 236
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 237 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 293
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 294 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 353
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 354 AEFALLIAISIF 365
>gi|195999182|ref|XP_002109459.1| hypothetical protein TRIADDRAFT_49897 [Trichoplax adhaerens]
gi|190587583|gb|EDV27625.1| hypothetical protein TRIADDRAFT_49897 [Trichoplax adhaerens]
Length = 327
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 135/292 (46%), Gaps = 52/292 (17%)
Query: 44 AVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKC 103
++CG + +HYGV +CEGCKGFFKRTV+K Y C ++ C +DK++RNRCQ+CR+QKC
Sbjct: 2 SICGQRSLRRHYGVYSCEGCKGFFKRTVRKNLTYTCRDNRNCDIDKKQRNRCQYCRYQKC 61
Query: 104 LQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEK 163
LQVGM +E V+ + +K S S + P+++ PL P E
Sbjct: 62 LQVGMKQEAVQEERVKN----------STPTSKTTLPIAIADGF-----PL-PTYGNDE- 104
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPE 223
V+ IR D E S+ + NP+ +
Sbjct: 105 ---------MPVEAIR---------------DAESTLNMNSVPYVEMQSNPVLNICQAAD 140
Query: 224 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTK 283
K Q ++L+ +A KIP F DLC +DQ +L +S EL + ++R+ A +
Sbjct: 141 K--QLFNLV--------EWAKKIPHFCDLCVDDQVILLRSGWNELLIAAFSFRSIAVEDG 190
Query: 284 LIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
L+ G + + + G + + E + +++D + CL A+ L
Sbjct: 191 LLLSTGHYIHRTSAHNAGIGAIFDRILTELVNQMRYLKMDKTELGCLRAIIL 242
>gi|62990125|ref|NP_571481.2| retinoic acid receptor alpha-A [Danio rerio]
gi|118573266|sp|Q90271.2|RARAA_DANRE RecName: Full=Retinoic acid receptor alpha-A; Short=RAR-alpha-A;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1-A; AltName: Full=Retinoic acid receptor alpha;
Short=zRAR alpha; AltName: Full=Retinoic acid receptor
alpha-2.A; Short=RAR-alpha-2.A
gi|704370|gb|AAB32276.1| retinoic acid receptor alpha [Danio rerio]
gi|62531027|gb|AAH92692.1| Retinoic acid receptor, alpha a [Danio rerio]
Length = 444
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 133/294 (45%), Gaps = 47/294 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C +K C ++K RNRCQ+CR QK
Sbjct: 75 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQK 134
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL+VGM KE VR D + ++ + KP+ + SP +
Sbjct: 135 CLEVGMSKESVRND--RNKKKKEEKKPECTENYTLSPDTEQM------------------ 174
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA-E 221
+D +R + F LC+ + Y N E +A +
Sbjct: 175 ------------IDRVRKAHQET--FPSLCQLGK------------YTTSNSSERRVALD 208
Query: 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
+ +F L T + FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 209 VDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQ 268
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ L+
Sbjct: 269 DTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLL 322
>gi|194294517|ref|NP_005684.2| oxysterols receptor LXR-alpha isoform 1 [Homo sapiens]
gi|55635897|ref|XP_521906.1| PREDICTED: oxysterols receptor LXR-alpha isoform 16 [Pan
troglodytes]
gi|397488359|ref|XP_003815234.1| PREDICTED: oxysterols receptor LXR-alpha isoform 1 [Pan paniscus]
gi|23503089|sp|Q13133.2|NR1H3_HUMAN RecName: Full=Oxysterols receptor LXR-alpha; AltName: Full=Liver X
receptor alpha; AltName: Full=Nuclear receptor subfamily
1 group H member 3
gi|61358255|gb|AAX41536.1| nuclear receptor subfamily 1 group H member 3 [synthetic construct]
gi|119588355|gb|EAW67949.1| nuclear receptor subfamily 1, group H, member 3, isoform CRA_e
[Homo sapiens]
gi|158254660|dbj|BAF83303.1| unnamed protein product [Homo sapiens]
gi|208966882|dbj|BAG73455.1| nuclear receptor subfamily 1, group H, member 3 [synthetic
construct]
gi|325495449|gb|ADZ17330.1| liver X nuclear receptor alpha variant 1 [Homo sapiens]
gi|410213434|gb|JAA03936.1| nuclear receptor subfamily 1, group H, member 3 [Pan troglodytes]
gi|410247452|gb|JAA11693.1| nuclear receptor subfamily 1, group H, member 3 [Pan troglodytes]
Length = 447
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 146/312 (46%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ Y+C + CP+D
Sbjct: 84 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGHCPMD 143
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 144 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSLPPRAS 197
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P L P PE++ L+ R FSD +
Sbjct: 198 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNRR------SFSDRLRVT------------- 236
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 237 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 293
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 294 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 353
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 354 AEFALLIAISIF 365
>gi|74902124|sp|Q5I7G2.1|RXR_LYMST RecName: Full=Retinoic acid receptor RXR; AltName: Full=Retinoid X
receptor; Short=LymRXR
gi|57164664|gb|AAW34268.1| retinoid X receptor [Lymnaea stagnalis]
Length = 436
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 113/220 (51%), Gaps = 25/220 (11%)
Query: 9 SESPKLRHSAPLSSASSSPGCDTS---RPTPPSPS-----------QLCAVCGDIAACQH 54
S P+ HS + S +SS G PT PSPS +CA+CGD A+ +H
Sbjct: 69 SPGPQQMHSPGMHSPTSSMGSPPMLCLSPTGPSPSPGLPHSSLHTKHICAICGDRASGKH 128
Query: 55 YGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVR 114
YGV +CEGCKGFFKRTV+K Y C DK C +DKR+RNRCQ+CR+ KCL +GM +E V+
Sbjct: 129 YGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLSMGMKREAVQ 188
Query: 115 TDSLKGRRGRLPSKPKSPQESPPSPPVSL-ITALYREPNPLEPPI-----AEPEKIQQFY 168
+ R R+ K ES + + + ++P I A+ + +
Sbjct: 189 EE-----RQRVKEKGDGEVESTSGANNDMPVEQILEAELAVDPKIDTYIDAQKDPVTNIC 243
Query: 169 SLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + +A +IP F++L EDQ +L ++ EL
Sbjct: 244 QAADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELL 283
>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [Cloning vector pERV3]
Length = 479
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
S+ SP+L S+P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 105 STGSPQL--SSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 162
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 163 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 222
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G + R ++ +S + PV I T Y E N P + +
Sbjct: 223 QEERQRG-KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDP 281
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 282 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 326
>gi|3393034|emb|CAA11907.1| ecdysone receptor [Ceratitis capitata]
Length = 673
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 154/351 (43%), Gaps = 31/351 (8%)
Query: 4 GRSSSSESPKLRHSAPLSSASSSPGCDTSR----PTPPSPSQLCAVCGDIAACQHYGVRT 59
S SS L S+ L+ S++ CD + P P +LC VCGD A+ HY T
Sbjct: 205 ANSISSGRDDLSPSSSLNGYSANDSCDVKKIKKGPAPRLQEELCLVCGDRASGYHYNALT 264
Query: 60 CEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS-- 117
CEGCKGFF+R+V K + Y C ++C +D R +CQ CR +KCL VGM E V ++
Sbjct: 265 CEGCKGFFRRSVTKNAVYCCKFGRSCEMDMYMRRKCQECRMKKCLAVGMRPECVVPENQC 324
Query: 118 LKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPL---EPP-----------IAEPEK 163
RR + K K Q + SP + ++ E L EPP I K
Sbjct: 325 AMKRREKKAQKEKEKQTTGNSPIICKTESIKNEILELMNCEPPSHPTCPLLPDDIVAKCK 384
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPE 223
L + VI G+ +ED L+ P+ E P
Sbjct: 385 ASNIPPLTRNQLAVIYKLIWYQDGYEQPSEED---------LKRIMSTPDENESP--NDI 433
Query: 224 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTK 283
+ + +V +I FA +P F+ + +EDQ L ++ S E+ +LR+A R
Sbjct: 434 SFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHNSDS 493
Query: 284 LIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ F N + + + D + +L FC+ ++ M++D +A L A+ +
Sbjct: 494 IFFANNRSYTRDAYKMAGVADNIEDLLHFCRQMYSMKVDNVEYALLTAIVI 544
>gi|355707924|gb|AES03108.1| nuclear receptor subfamily 4 group A member 3 [Mustela putorius
furo]
Length = 111
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 68 KRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPS 127
KRTVQK +KYVCLA+K CPVDKRRRNRCQ+CRFQKCL VGMVKEVVRTDSLKGRRGRLPS
Sbjct: 1 KRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGRLPS 60
Query: 128 KPKSP 132
KPKSP
Sbjct: 61 KPKSP 65
>gi|193784105|dbj|BAG53649.1| unnamed protein product [Homo sapiens]
Length = 447
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 142/301 (47%), Gaps = 35/301 (11%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ Y+C + CP+D R +CQ CR
Sbjct: 95 NELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGHCPMDTYMRRKCQECR 154
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC Q GM +E V ++ ++ K QE + SL P L P
Sbjct: 155 LRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSLPPRASSPPQIL--PQL 206
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
PE++ L+ R FSD + P P+ P
Sbjct: 207 SPEQLGMIEKLVAAQQQCNRR------SFSDRLRVT----------------PWPMAPDP 244
Query: 220 AEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
E QQ F L SV I FA ++PGF L +EDQ L +++++E+ +L +
Sbjct: 245 HSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSR 304
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R + F ++ ++ +++N I EF ++++ ++++ + FA L A+++
Sbjct: 305 RYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISI 364
Query: 335 I 335
Sbjct: 365 F 365
>gi|145749762|gb|ABP96711.1| estrogen receptor alpha [Pimephales promelas]
Length = 602
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 145/310 (46%), Gaps = 52/310 (16%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + YVC A C +D+ RR CQ CR
Sbjct: 194 TRFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYVCPATNQCTIDRNRRKSCQACR 253
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQE------SPPSPPVSLITALYREPNP 153
+KC +VGM+K +R D +G R + KS E S S V L T
Sbjct: 254 LRKCYEVGMMKGGIRKD--RGGRAIRRERRKSDNEDRDKSYSEQSGRVGLRT-------- 303
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE-DQELLFQSASLELFYREP 212
P+ ++ +S +V+ S LC DQ L+ L EP
Sbjct: 304 -------PQDKRK-----KSSAEVV----------SALCMPPDQVLVL------LLGAEP 335
Query: 213 NPL------EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ PP E + ++ + + +A K+PGF DL DQ L +S+ L
Sbjct: 336 PAVCSRQKHSPPYTEITMMSLLTNMADKELVHMIAWAKKVPGFQDLSLHDQVQLLESSWL 395
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KLIF ++L++ + + G + + +L L +++ +
Sbjct: 396 EVLMIGLIWRSIHSPGKLIFAQDLILDRNEGECVEGMAEIFDMLLATVARLRSLKLKLEE 455
Query: 326 FACLCALTLI 335
F CL A+ L+
Sbjct: 456 FVCLKAIILL 465
>gi|52789059|gb|AAU87498.1| estrogen receptor alpha [Pimephales promelas]
gi|55139374|gb|AAV41373.1| estrogen receptor alpha [Pimephales promelas]
Length = 560
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 145/310 (46%), Gaps = 52/310 (16%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + YVC A C +D+ RR CQ CR
Sbjct: 152 TRFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYVCPATNQCTIDRNRRKSCQACR 211
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQE------SPPSPPVSLITALYREPNP 153
+KC +VGM+K +R D +G R + KS E S S V L T
Sbjct: 212 LRKCYEVGMMKGGIRKD--RGGRAIRRERRKSDNEDRDKSYSEQSSRVGLRT-------- 261
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE-DQELLFQSASLELFYREP 212
P+ ++ +S +V+ S LC DQ L+ L EP
Sbjct: 262 -------PQDKRK-----KSSAEVV----------SALCMPPDQVLVL------LLGAEP 293
Query: 213 NPL------EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ PP E + ++ + + +A K+PGF DL DQ L +S+ L
Sbjct: 294 PAVCSRQKHSPPYTEITMMSLLTNMADKELVHMIAWAKKVPGFQDLSLHDQVQLLESSWL 353
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KLIF ++L++ + + G + + +L L +++ +
Sbjct: 354 EVLMIGLIWRSIHSPGKLIFAQDLILDRNEGECVEGMAEIFDMLLATVARLRSLKLKLEE 413
Query: 326 FACLCALTLI 335
F CL A+ L+
Sbjct: 414 FVCLKAIILL 423
>gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio]
Length = 365
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 148/330 (44%), Gaps = 67/330 (20%)
Query: 20 LSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQHYGVRTCEGCKG 65
++S SSS G + P PS +CA+CGD ++ +HYGV +CEGCKG
Sbjct: 1 MNSVSSSEDIKPPLGLNGVMKVPAQPSGTPLSLTKHICAICGDRSSGKHYGVYSCEGCKG 60
Query: 66 FFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRL 125
FFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ + + + R
Sbjct: 61 FFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRAKE-RS 119
Query: 126 PSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
++ +S + PV I LE +A K + + +
Sbjct: 120 ENEVESTSSANEDMPVEKI---------LEAELAVEPKTETY-------------IETNV 157
Query: 186 PGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 245
P S+ + + Q+A +LF + +A +
Sbjct: 158 PMPSNSPNDPVTNICQAADKQLF-----------------------------TLVEWAKR 188
Query: 246 IPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDD 304
IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + + G
Sbjct: 189 IPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAI 248
Query: 305 WLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + E + M++D + CL A+ L
Sbjct: 249 FDRVLTELVSKMRDMQMDKTELGCLRAIVL 278
>gi|158302672|dbj|BAF85823.1| ultraspiracle [Liocheles australasiae]
Length = 410
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 102/182 (56%), Gaps = 22/182 (12%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LCA+CGD A+ +HYGV +CEGCKGFFKRTV+K Y C ++ C +DKR+RNRCQ+CR+
Sbjct: 86 HLCAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERTCTIDKRQRNRCQYCRY 145
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPS----PPVSLI--TALYREP--N 152
QKCL +GM +E + +++ R R + ++ ES + P+ I LY EP +
Sbjct: 146 QKCLMMGMKREALFVSAVQEERQRTKDRNENEVESTSNFQSDMPIERILEAELYIEPKRD 205
Query: 153 PLEPPIAEP------EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
+P +P Q Y L+ +A +P F+DL +DQ +L ++ E
Sbjct: 206 DSDPDHKDPVANICQAADHQLYQLV--------EWAKHVPHFTDLPLDDQMVLLKAGWNE 257
Query: 207 LF 208
L
Sbjct: 258 LL 259
>gi|17367840|sp|Q9W5Z3.1|RARA_FUGRU RecName: Full=Retinoic acid receptor alpha; Short=RAR-alpha;
AltName: Full=Nuclear receptor subfamily 1 group B
member 1
gi|4972006|emb|CAB43870.1| retinoic acid receptor alpha-1 [Takifugu rubripes]
gi|8979745|emb|CAB96754.1| retinoic acid receptor alpha-1 [Takifugu rubripes]
Length = 447
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 127/294 (43%), Gaps = 47/294 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C +K C ++K RNRCQ+CR QK
Sbjct: 80 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQK 139
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL+VGM KE VR D N + +PE
Sbjct: 140 CLEVGMSKESVRNDR----------------------------------NKKKKDEKKPE 165
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA-E 221
I+ + T + R F LC+ + Y N E +A +
Sbjct: 166 CIENYVLSPDTEQMINRVRKAHQETFPSLCQLGK------------YTTTNSSERRVALD 213
Query: 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
+ +F L T + FA ++PGF L DQ L ++A L++ +LR+ R E
Sbjct: 214 VDLWDKFSELSTKCIIKTVEFAKQLPGFVTLTIADQITLLKAACLDILILRICTRYTPEQ 273
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ L+
Sbjct: 274 DTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLL 327
>gi|293628862|dbj|BAJ05025.1| estrogen receptor alpha [Cynops pyrrhogaster]
Length = 582
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 155/334 (46%), Gaps = 51/334 (15%)
Query: 12 PKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
P R +S SP ++++ T + CAVC D A+ HYGV +CEGCK FFKR++
Sbjct: 152 PSGRERTSTASEKGSPSMESTKET-----RYCAVCSDYASGYHYGVWSCEGCKAFFKRSI 206
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
Q + Y+C A C +DK RR CQ CR +KC +VGM+K +R D RRG K K
Sbjct: 207 QGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKD----RRGGRLIKHKR 262
Query: 132 PQESPPSPPVSLIT-----ALYREP---NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
+E ++ +L+ P N + P+ Q +L+ ++ +++
Sbjct: 263 QKEDADQKLEEAVSERRTPSLWVNPSTKNTKKNPVLAMTAEQLLSALIEAEPPIV--YSE 320
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
PG +LL +++ + L +A+ E + ++A
Sbjct: 321 HDPG---------KLLSEASMMTLLTN--------LADKELVHMI------------NWA 351
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ--CQRSF 301
++PGF DL DQ L + A LE+ ++ L +R+ KL F +++++ Q C F
Sbjct: 352 KRVPGFVDLTLHDQVHLLECAWLEILMVGLVWRSVEHPGKLSFAPNLLMDRNQGKCVEGF 411
Query: 302 GDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + + ++ M+++ F CL ++ L+
Sbjct: 412 VEIF-DMLVTTAARFRAMKLEGEEFMCLKSIILL 444
>gi|1583309|prf||2120366D retinoid X receptor:ISOTYPE=gamma
Length = 391
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 135/295 (45%), Gaps = 55/295 (18%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 64 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCMIDKRQRNRCQYCRY 123
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + R +K +S E E P+E
Sbjct: 124 QKCLAMGMKREAVQEE-------RQRAKERSEAE---------FGGCANEDMPVE----- 162
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
KI + ++L E + + A+L PN I
Sbjct: 163 --KILE----------------------AELAVEPKTETYVEANLSPSANSPNDPVTNIC 198
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ Q F + +A +IP FSDL +DQ +L ++ EL + ++R+ A
Sbjct: 199 QAADKQLF---------TLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAV 249
Query: 281 DTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ G+ + + + G + + E + M++D + CL A+ L
Sbjct: 250 KDGILLATGLHVHRNSAHTAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 304
>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning vector pFB-ERV]
Length = 472
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
S+ SP+L S+P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 98 STGSPQL--SSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 155
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 156 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 215
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G + R ++ +S + PV I T Y E N P + +
Sbjct: 216 QEERQRG-KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDP 274
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 275 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 319
>gi|451328|gb|AAA87394.1| ecdysteroid receptor [Aedes aegypti]
Length = 675
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 141/317 (44%), Gaps = 26/317 (8%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
PTP +LC VCGD + HY TCEGCKGFF+R+V K + Y C AC +D R
Sbjct: 181 PTPRQQEELCLVCGDRESGYHYNALTCEGCKGFFRRSVTKNAVYCCKFGHACEMDMYMRR 240
Query: 94 RCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYR---- 149
+CQ CR +KCL VGM E V ++ + + K + + VS + YR
Sbjct: 241 KCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDKVQTNATVSTTNSTYRSEIL 300
Query: 150 ------EPNPLEPPIAEPEKIQQ-----FYSLLTTS-VDVIRHFADKIPGFSDLCKEDQE 197
+P P + PEK+ Q LLT + + VI G+ +ED +
Sbjct: 301 PILMKCDPPPHQAIPLLPEKLLQENRLRNIPLLTANQMAVIYKLIWYQDGYEQPSEEDLK 360
Query: 198 LLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 257
+ + P E + + +V +I FA +P F+ + +EDQ
Sbjct: 361 RIMIGS----------PNEEEDQHDVHFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQ 410
Query: 258 ELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLH 317
L ++ S E+ +LR+A R A ++F N + + + D + +L FC+ +
Sbjct: 411 ITLLKACSSEVMMLRMARRYDAATDSILFANNRSYTRDSYRMAGMADTIEDLLHFCRQMF 470
Query: 318 LMEIDISAFACLCALTL 334
+ +D +A L A+ +
Sbjct: 471 SLTVDNVEYALLTAIVI 487
>gi|148232246|ref|NP_001083086.1| estrogen receptor 1 [Xenopus laevis]
gi|35396537|gb|AAQ84782.1| estrogen receptor alpha 1 [Xenopus laevis]
Length = 585
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 154/332 (46%), Gaps = 35/332 (10%)
Query: 7 SSSESPKLRHSAPLSSASSS--PGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCK 64
SSS++ + +SSA+ P ++++ T + CAVC D A+ HYGV +CEGCK
Sbjct: 146 SSSDNRRQSGRERMSSANDKGPPSMESTKET-----RYCAVCSDYASGYHYGVWSCEGCK 200
Query: 65 GFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGR 124
FFKR++Q + Y+C A C +DK RR CQ CR +KC +VGM+K +R D R GR
Sbjct: 201 AFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDR---RGGR 257
Query: 125 LPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 184
+ + +E V +P +I+ + SV + K
Sbjct: 258 MLKHKRQKEEQEQKNDV------------------DPSEIRTASIWVNPSVKSM-----K 294
Query: 185 IPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 244
+ L E A + Y E + +P ++E + +L + + ++A
Sbjct: 295 LSPVLSLTAEQLISALMEAEPPIVYSEHDSTKP-LSEASMMTLLTNLADKELVHMINWAK 353
Query: 245 KIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG-D 303
++PGF DL DQ L + A LE+ ++ L +R+ KL F ++L++ Q + G
Sbjct: 354 RVPGFVDLTLHDQVHLLECAWLEILMVGLIWRSVEHPGKLSFAPNLLLDRNQGRCVEGLV 413
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + ++ +M + F CL ++ L+
Sbjct: 414 EIFDMLVTTATRFRMMRLRGEEFICLKSIILL 445
>gi|89331174|dbj|BAE81788.1| estrogen receptor alpha [Xenopus (Silurana) tropicalis]
Length = 585
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 143/298 (47%), Gaps = 30/298 (10%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 176 TRYCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 235
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLP-SKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
+KC +VGM+K +R D GR + K + Q++ +P T+++ P+
Sbjct: 236 LRKCYEVGMMKGGIRKDRRGGRMLKHKRQKEEQEQKNDVTPSEIRTTSIWVNPS------ 289
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ K+ SL T+ +I + P + Y E + +P
Sbjct: 290 VKSMKLSPVLSL--TAEQLISALMEAEP-------------------PIVYSEHDSTKP- 327
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 328 LSEASMMTLLTNLADKELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMVGLIWRSV 387
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL F ++L++ Q + G + + ++ +M + F CL ++ L+
Sbjct: 388 EHPGKLSFAPNLLLDRNQGRCVEGLVEIFDMLVTTATRFRMMRLRGEEFICLKSIILL 445
>gi|84579197|dbj|BAE73032.1| hypothetical protein [Macaca fascicularis]
Length = 462
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
S+ SP+L S+P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 88 STGSPQL--SSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 145
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 146 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 205
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G+ R ++ +S + PV I T Y E N P + +
Sbjct: 206 QEERQRGKD-RNENEVESTSGANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDP 264
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + ++ +A +IP FS+L +DQ +L ++ EL
Sbjct: 265 VTNICQAADKQLFMLVEWAKRIPHFSELPLDDQVILLRAGWNELL 309
>gi|383848789|ref|XP_003700030.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Megachile
rotundata]
Length = 427
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 108/203 (53%), Gaps = 16/203 (7%)
Query: 16 HSAPLSSASSSPGCDTSRPTPPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
HS LS++ S + P PP+ LC++CGD A+ +HYGV +CEGCKGFFKRT
Sbjct: 79 HSNLLSTSPSGQNKAVA-PYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 137
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
V+K Y C +K+C +DKR+RNRCQ+CR+QKCL +GM +E V+ + R R + +
Sbjct: 138 VRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEE-----RQRTKERDQ 192
Query: 131 SPQESPPS-----PPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
S ES S P ++ A R +E + + + + +A I
Sbjct: 193 SEVESTSSLHSDMPIERILEAEKRVEYKMEQQGNYENAVSHICNATNKQLFQLVAWAKHI 252
Query: 186 PGFSDLCKEDQELLFQSASLELF 208
P F+ L EDQ LL ++ EL
Sbjct: 253 PHFTSLPLEDQVLLLRAGWNELL 275
>gi|323461809|dbj|BAJ76723.1| retinoid X receptor isoform 2 [Reishia clavigera]
Length = 447
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 110/209 (52%), Gaps = 12/209 (5%)
Query: 6 SSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKG 65
+SS SP + +P + +SSPG P +CA+CGD A+ +HYGV +CEGCKG
Sbjct: 91 TSSLGSPTMMCLSP--TGTSSPGM----PHSGLSKHICAICGDRASGKHYGVYSCEGCKG 144
Query: 66 FFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRL 125
FFKRTV+K Y C DK C +DKR+RNRCQ+CR+ KCL GM +E + +++ R R+
Sbjct: 145 FFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLAQGMKREACLSSAVQEERQRV 204
Query: 126 PSKPKSPQESPPSPPVSL-ITALYREPNPLEPPI-----AEPEKIQQFYSLLTTSVDVIR 179
K ES + + + +EP I A+ E + + +
Sbjct: 205 KEKGDGEVESTSGANSDMPVEQILEAEIAVEPKIDTYIDAQKEPVTNICQAADKQLFTLV 264
Query: 180 HFADKIPGFSDLCKEDQELLFQSASLELF 208
+A +IP F +L EDQ +L ++ EL
Sbjct: 265 DWAKRIPHFVELPLEDQVILLRAGWNELL 293
>gi|355567352|gb|EHH23693.1| hypothetical protein EGK_07223, partial [Macaca mulatta]
Length = 453
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
S+ SP+L S+P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 79 STGSPQL--SSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 136
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 137 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 196
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G+ R ++ +S + PV I T Y E N P + +
Sbjct: 197 QEERQRGKD-RNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDP 255
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 256 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 300
>gi|348522526|ref|XP_003448775.1| PREDICTED: thyroid hormone receptor alpha-like [Oreochromis
niloticus]
Length = 422
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 159/341 (46%), Gaps = 39/341 (11%)
Query: 11 SPKLRHSAPLSSASSSPGCDTSRPTPPSPSQL-----CAVCGDIAACQHYGVRTCEGCKG 65
PK + S S G S P PS L C VCGD A HY TCEGCKG
Sbjct: 20 GPKRKRKNSQCSVKSMTGFSVS-PQWYIPSYLEKDEPCVVCGDKATGYHYRCITCEGCKG 78
Query: 66 FFKRTVQKGSK--YVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
FF+RT+QK Y C D C +DK RN+CQ CRF+KC+ VGM ++V DS + +
Sbjct: 79 FFRRTIQKNLHPTYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKR 138
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
RL + + ++ ++ +L P EP AE + L+ + RH
Sbjct: 139 RLIEENRERRKKE-----EMVKSLQSRP---EPTGAE-------WELIRLVTEAHRHTNA 183
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPL-EPPIA--------EPEKIQQFYSLLTT 234
+ + K+ ++ L +E+ +EP + + P+A + E +F ++T
Sbjct: 184 QGSQW----KQKRKFLL---VVEVRLKEPEKIGQSPVAPTSDGDKVDLEAFSEFTKIITP 236
Query: 235 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEK 294
++ + FA K+P FS+L EDQ +L + +E+ LR A R + L + +++
Sbjct: 237 AITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAMRYDPDSETLTLSGEMAVKR 296
Query: 295 QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+Q + +AI + +SL +D + A L A+ L+
Sbjct: 297 EQLKNGGLGVVSDAIFDLGKSLAQFNLDDTEVALLQAVLLM 337
>gi|348517947|ref|XP_003446494.1| PREDICTED: retinoic acid receptor alpha-B-like [Oreochromis
niloticus]
Length = 483
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 133/294 (45%), Gaps = 47/294 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ CR QK
Sbjct: 97 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKVCVINKVTRNRCQSCRLQK 156
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGM KE+VR D +K K ++ P + +++A + E
Sbjct: 157 CLDVGMSKELVRNDR---------TKKKKEEKKQPDTEIYVLSA-------------DTE 194
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
++ + V R D P L K Y N E +A
Sbjct: 195 QMIE---------RVRRAHQDTFPSLCQLGK---------------YTTSNSSEHRVALD 230
Query: 223 EKIQQFYSLLTTSVDV-IRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
+ +S L+T + FA ++PGF+ L DQ L ++A L++ +LR+ R +
Sbjct: 231 VSLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQ 290
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ L+
Sbjct: 291 DTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLL 344
>gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
gi|210060994|pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
gi|210061000|pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
S+ SP+L S+P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 93 STGSPQL--SSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 150
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 151 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 210
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G+ R ++ +S + PV I T Y E N P + +
Sbjct: 211 QEERQRGKD-RNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDP 269
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 314
>gi|237511645|gb|ACQ99544.1| liver X receptor [Cyprinus carpio]
gi|270210219|gb|ACR57833.2| liver X receptor [Ctenopharyngodon idella]
Length = 409
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 153/322 (47%), Gaps = 33/322 (10%)
Query: 19 PLSSASSSPGCDTSRPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG 74
P + G R P+P +++C+VCGD A+ HY V +CEGCKGFF+R+V KG
Sbjct: 34 PTEDTPAPEGHPVKRKKGPAPKMLGNEVCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKG 93
Query: 75 SKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQE 134
++Y C C +D R +CQ CR +KC + GM+++ V L + RL K +E
Sbjct: 94 AQYTCKNSGRCEMDMYMRRKCQQCRLRKCREAGMLEQCV----LSEEQIRLKKMKKQEEE 149
Query: 135 SPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE 194
+ + V+ + P P PP+A PE+ + +K+ C
Sbjct: 150 TARTSAVATPS-----PAPEMPPLA-PEQ---------------QEMIEKLVAMQKQC-- 186
Query: 195 DQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 254
++ + + + +PL + + ++ F L SV I FA ++PGF +L +
Sbjct: 187 NKRSFLDRPKVTPWPQSQDPLNREVRQ-QRFAHFTELAIMSVQEIVDFAKQLPGFLELTR 245
Query: 255 EDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFC 313
EDQ L +++++E+ +L + R + F K+ ++ +++N I EF
Sbjct: 246 EDQIALLKTSTIEIMLLETSRRYNPAIESITFLKDFSYNKEDFAKAGLQLEFINPIFEFS 305
Query: 314 QSLHLMEIDISAFACLCALTLI 335
+ ++ + +D + +A L A+ +
Sbjct: 306 KGMNDLHLDEAEYALLIAINIF 327
>gi|115394376|gb|ABI97120.1| estrogen receptor-related receptor [Marisa cornuarietis]
Length = 424
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 140/280 (50%), Gaps = 48/280 (17%)
Query: 5 RSSSSESPKLRHSAPLSSA-------SSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGV 57
RS +SP+ + +P+S SSS C + + +P +LC VCGD+A+ HYGV
Sbjct: 45 RSYQGDSPESGNISPVSIENGKIDFCSSSTVC-SDQDSPDELKRLCLVCGDVASGYHYGV 103
Query: 58 RTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS 117
+CE CK FFKRT+Q +Y C A C + KRRR CQ CRFQKCL+VGM++E VR D
Sbjct: 104 SSCEACKAFFKRTIQGNIEYSCPASGECEITKRRRKACQACRFQKCLRVGMLREGVRLDR 163
Query: 118 LKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDV 177
++G R + + Q + P VS++ ++ +++ + + +L +
Sbjct: 164 VRGGRQKY-KRSIDNQSAMVQPVVSVVKKSCQD-------LSDNKILNTLLALESQ---- 211
Query: 178 IRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVD 237
DK+ SD D ++ F++A +L RE ++T S
Sbjct: 212 ----LDKLFASSDPFLPDDDVKFRAAVSDLADREL------------------VITIS-- 247
Query: 238 VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
+A ++PGF++L DQ L Q + LE+ L L +R+
Sbjct: 248 ----WAKQVPGFTNLSLMDQMNLLQHSWLEILCLNLVFRS 283
>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha [Homo sapiens]
Length = 452
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
S+ SP+L S+P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 78 STGSPQL--SSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 135
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 136 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 195
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G+ R ++ +S + PV I T Y E N P + +
Sbjct: 196 QEERQRGKD-RNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDP 254
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 255 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 299
>gi|4506755|ref|NP_002948.1| retinoic acid receptor RXR-alpha [Homo sapiens]
gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|35885|emb|CAA36982.1| unnamed protein product [Homo sapiens]
gi|84201602|gb|AAI10999.1| Retinoid X receptor, alpha [Homo sapiens]
gi|119608529|gb|EAW88123.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|119608530|gb|EAW88124.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|167773495|gb|ABZ92182.1| retinoid X receptor, alpha [synthetic construct]
gi|208965438|dbj|BAG72733.1| retinoid X receptor, alpha [synthetic construct]
gi|216409718|dbj|BAH02296.1| retinoid X receptor, alpha [Homo sapiens]
gi|325495497|gb|ADZ17354.1| retinoid X nuclear receptor alpha [Homo sapiens]
gi|380815422|gb|AFE79585.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|383420605|gb|AFH33516.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|226861|prf||1609194A retinoic acid receptor RXRalpha
Length = 462
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
S+ SP+L S+P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 88 STGSPQL--SSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 145
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 146 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 205
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G + R ++ +S + PV I T Y E N P + +
Sbjct: 206 QEERQRG-KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDP 264
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 265 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 309
>gi|410222730|gb|JAA08584.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410251064|gb|JAA13499.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410306614|gb|JAA31907.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410353913|gb|JAA43560.1| retinoid X receptor, alpha [Pan troglodytes]
Length = 462
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
S+ SP+L S+P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 88 STGSPQL--SSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 145
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 146 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 205
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G + R ++ +S + PV I T Y E N P + +
Sbjct: 206 QEERQRG-KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDP 264
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 265 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 309
>gi|348558920|ref|XP_003465264.1| PREDICTED: oxysterols receptor LXR-alpha-like isoform 1 [Cavia
porcellus]
Length = 443
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 151/318 (47%), Gaps = 51/318 (16%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ YVC + CP+D
Sbjct: 80 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGACYVCHSGGHCPMD 139
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDS---LKGRRGRLPSKPKSPQESP--PSPPVSL 143
R +CQ CR +KC Q GM +E V ++ LK + R + ++ +P SPP +L
Sbjct: 140 TYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRREEEQAQAMSTTPRAGSPPQAL 199
Query: 144 ITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVI-RHFADKIPGFSDLCKEDQELLFQS 202
P PE++ L+ R F+D++
Sbjct: 200 -------------PQLSPEQLGMIKQLVAAQQQCNKRSFSDRL----------------- 229
Query: 203 ASLELFYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 258
P P+ P E QQ F L SV I FA ++PGF L +EDQ
Sbjct: 230 ------RVTPWPMAPDPQSREVRQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSQEDQI 283
Query: 259 LLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLH 317
L +++++E+ +L + R + F ++ ++ +++N I EF ++++
Sbjct: 284 ALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMN 343
Query: 318 LMEIDISAFACLCALTLI 335
++++ + FA L A+++
Sbjct: 344 ELQLNDAEFALLIAISIF 361
>gi|449082861|dbj|BAM83567.1| ultraspiracle long isoform [Periplaneta americana]
Length = 441
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 137/327 (41%), Gaps = 54/327 (16%)
Query: 21 SSASSSPGCDTSRPTPPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGS 75
+ +S S G S P PP+ LC +CGD A +HYGV CEGCKGFFK TV+K
Sbjct: 68 TGSSQSNGSWGSSPYPPNHPLCGSKHLCTICGDRACGKHYGVYCCEGCKGFFKWTVRKDL 127
Query: 76 KYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQES 135
Y C DK C +DKR+RNRCQ+CR+QKCL +GM +E V+ + R R + ++ ES
Sbjct: 128 SYACREDKNCIIDKRQRNRCQYCRYQKCLGMGMKREAVQEE-----RQRTKERDQNEVES 182
Query: 136 PPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPG------FS 189
S + E E + + +VD R + G +
Sbjct: 183 TSSLHTDMPVERILEAEKRVECKTEHQVEFELRCWNRKTVDAWRGRGADLNGVGPKSAVT 242
Query: 190 DLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGF 249
++C+ + LFQ + +A IP F
Sbjct: 243 NICQATNKQLFQ-------------------------------------LVEWAKHIPHF 265
Query: 250 SDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC-QRSFGDDWLNA 308
+ L DQ LL ++ EL + ++R+ ++ G+ + + Q G +
Sbjct: 266 TSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLATGLTVHRNSAHQAGVGTIFDRV 325
Query: 309 ILEFCQSLHLMEIDISAFACLCALTLI 335
+ E + M++D + CL ++ L
Sbjct: 326 LTELVAKMREMKMDKTELVCLRSVILF 352
>gi|451774918|gb|AGF50212.1| ultraspiracle protein [Polyrhachis vicina]
Length = 424
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 146/341 (42%), Gaps = 87/341 (25%)
Query: 17 SAPLSSASSSPGCD-------------TSRPTPPS-----PSQLCAVCGDIAACQHYGVR 58
S P+S S + GC ++ P PP+ LC++CGD A+ +HYGV
Sbjct: 61 SGPISPVSFTAGCHGNLLSTSPSGQNKSAAPYPPNHPLSGSKHLCSICGDRASGKHYGVY 120
Query: 59 TCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSL 118
+CEGCKGFFKRTV+K Y C +K+C +DKR+RNRCQ+CR+QKCL +GM +E V+ +
Sbjct: 121 SCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEE-- 178
Query: 119 KGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVI 178
R R + +S ES T+ P++ I E EK + +
Sbjct: 179 ---RQRTKERDQSEVES---------TSNLHADMPID-RILEAEKRVECK---------M 216
Query: 179 RHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDV 238
H + S +C + LFQ L T
Sbjct: 217 EHLGNYENAVSHICNATNKQLFQ------------------------------LVTWAKH 246
Query: 239 IRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQ 298
I H F+ L DQ LL ++ EL + +YR+ ++ G + + Q
Sbjct: 247 IPH-------FTSLPVADQILLLKAGWNELLIAAFSYRSIEVKDSIVLATGTTVHRNSAQ 299
Query: 299 RS-----FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ F D L+ E + M++D + CL ++ L
Sbjct: 300 QAGLITIFDDRVLS---ELVSKMREMKMDRTELGCLRSIIL 337
>gi|340719093|ref|XP_003397991.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus terrestris]
gi|350396161|ref|XP_003484462.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus impatiens]
Length = 427
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 108/203 (53%), Gaps = 16/203 (7%)
Query: 16 HSAPLSSASSSPGCDTSRPTPPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
HS LS++ S + P PP+ LC++CGD A+ +HYGV +CEGCKGFFKRT
Sbjct: 79 HSNLLSTSPSGQN-KAAAPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 137
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
V+K Y C +K+C +DKR+RNRCQ+CR+QKCL +GM +E V+ + R R + +
Sbjct: 138 VRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEE-----RQRTKERDQ 192
Query: 131 SPQESPPS-----PPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
S ES S P ++ A R +E + + + + +A I
Sbjct: 193 SEVESTSSLHSDMPIERILEAEKRVECKMEQQGNYENAVSHICNATNKQLFQLVAWAKHI 252
Query: 186 PGFSDLCKEDQELLFQSASLELF 208
P F+ L EDQ LL ++ EL
Sbjct: 253 PHFTSLPLEDQVLLLRAGWNELL 275
>gi|431898965|gb|ELK07335.1| Retinoic acid receptor RXR-alpha [Pteropus alecto]
Length = 439
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 118/226 (52%), Gaps = 29/226 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
S+ SP+L S+P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 65 STSSPQL--SSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 122
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 123 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 182
Query: 114 RTDSLKGR-RGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPE 162
+ + +G+ R ++P S PV I T Y E N P + +
Sbjct: 183 QEERQRGKDRSEAEAEPASSANE--DMPVEKILEAELAVEPKTETYVEANMGLNPSSPND 240
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 241 PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 286
>gi|242021609|ref|XP_002431237.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212516486|gb|EEB18499.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 448
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 102/190 (53%), Gaps = 23/190 (12%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C ++KRRR CQ C
Sbjct: 112 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPAANDCEINKRRRKACQAC 171
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGR--------------LPSKPKSP--QESPPSPPVS 142
RFQKCL++GM+KE VR D ++G R + LP KP P +++ +S
Sbjct: 172 RFQKCLRMGMLKEGVRLDRVRGGRQKYRRNTDTPYQIHSMLPLKPYLPSLEDNKILEALS 231
Query: 143 L----ITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQEL 198
L I+ + ++ + +P + + Y V +I +A IPGF DL DQ
Sbjct: 232 LNEPDISVMAQDISNADPAVRTLNILSDLYD--QELVKIIT-WAKHIPGFLDLTLNDQMR 288
Query: 199 LFQSASLELF 208
L QS E+
Sbjct: 289 LLQSTWAEIL 298
>gi|189066517|dbj|BAG35767.1| unnamed protein product [Homo sapiens]
Length = 463
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 134/300 (44%), Gaps = 66/300 (22%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C +DKR+RNRCQ+C +
Sbjct: 137 HICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCCY 196
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + + R R S+ + PV I LE +A
Sbjct: 197 QKCLVMGMKREAVQEERQRSRE-RAESEAECATSGHEDMPVERI---------LEAELAV 246
Query: 161 PEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
K + + + + V I H ADK
Sbjct: 247 EPKTESYGDMNMENSTNDPVTNICHAADK------------------------------- 275
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
Q ++L+ +A +IP FSDL EDQ +L ++ EL + ++
Sbjct: 276 -----------QLFTLV--------EWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH 316
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ + ++ G+ + + + G + + E + M++D S CL A+ L
Sbjct: 317 RSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 376
>gi|145228027|gb|ABP48738.1| E75 nuclear receptor [Daphnia magna]
Length = 942
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 149/310 (48%), Gaps = 46/310 (14%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRF 100
LC VCGD A+ HYGV +CEGCKGFF+R++Q+ +Y C ++ C + + RNRCQ+CR
Sbjct: 99 LCRVCGDKASGFHYGVHSCEGCKGFFRRSIQQKIQYRPCTKNQQCSILRINRNRCQYCRL 158
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++ VR GR+P + K+ ++ A+ + +AE
Sbjct: 159 KKCIAVGMSRDAVRF-------GRVPKREKA----------KILAAM----QSVNARLAE 197
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN------- 213
+F + V+R + D +E ++L A +R+PN
Sbjct: 198 RSLPAEFADEVQLMQSVVRAHMETC----DFTREKVQVLMADA-----HRQPNYTACPPT 248
Query: 214 ---PLEPPIA----EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
PL P A + + +Q F ++ + FA + PGF+ L ++D+ L +
Sbjct: 249 LACPLNPTPAPSNGQQQLLQDFSERFLPAIRDVVEFAKRCPGFTLLAEDDKVTLLKPGVF 308
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWL-NAILEFCQSLHLMEIDISA 325
E+ ++RLA ++ ++ N +L + S +L +++ EF + L+ + ++ +
Sbjct: 309 EVLLVRLAAMFDSQSNTMLCLNXQLLRRDALHNSSNARFLMDSMFEFAERLNSLALNDAE 368
Query: 326 FACLCALTLI 335
CA+ +I
Sbjct: 369 LGLFCAVVVI 378
>gi|92911762|gb|ABE96637.1| retinoic acid receptor beta [Xenopus laevis]
Length = 305
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 130/293 (44%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C +K C ++K RNRCQ+CR Q+
Sbjct: 11 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKNCVINKVTRNRCQYCRLQR 70
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + PSK + + + + +T R+ + P
Sbjct: 71 CFEVGMSKESVRND--RNKKKKEPSKQECIESYEMTAELDDLTEKIRKAHQETFP----- 123
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
+ Q T S R D GF D
Sbjct: 124 SLCQLGKYTTNSSADHRVRLD--LGFWD-------------------------------- 149
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 150 ----KFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRFTPEQD 205
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F +E+D + L A+ LI
Sbjct: 206 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQFLPLEMDDTETGLLSAICLI 258
>gi|148515004|gb|ABQ81864.1| ecdysteroid receptor [Plutella xylostella]
Length = 545
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 154/344 (44%), Gaps = 37/344 (10%)
Query: 20 LSSASSSPGC----DTSRPTP-PSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC D RP P+P Q LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 109 LSPASSVNGCSNDGDARRPKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 168
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKE--------VVRTDSLKGRR- 122
K + Y+C AC +D R +CQ CR +KCL VGM E ++ + K +R
Sbjct: 169 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPETQCAIKREEKKAQRE 228
Query: 123 -GRLPSKPKSPQ---------ESPPSPPVSLITALYRE--PNPLEPPIAEPEKIQQFYSL 170
+LP + E PP ++ L E P L + E + + L
Sbjct: 229 KDKLPVSTTTVDDHMPPIMQCEPPPPEAARILDCLQHEVVPRFLSDKLLEQNRAKNIPPL 288
Query: 171 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYS 230
+I G+ +ED + + Q+ ++ + E P +Q
Sbjct: 289 TPNQKFLIARLVWYQDGYEQPSEEDLKRVTQT------WQASDDDEEESDMP--FRQITE 340
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ +V +I FA +PGF+ + + DQ L ++ S E+ +LR+ R ++F N
Sbjct: 341 MTILTVQLIVEFAKGLPGFAKISQPDQITLLKACSSEVMMLRVVRRYDVTTDSILFANNQ 400
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +++ + +L FC+ ++ + +D +A L A+ +
Sbjct: 401 AYTRDNYRKAGMAYVIEDLLHFCRCMYSLNMDNIHYALLTAIVI 444
>gi|312379387|gb|EFR25678.1| hypothetical protein AND_08779 [Anopheles darlingi]
Length = 395
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 146/324 (45%), Gaps = 23/324 (7%)
Query: 4 GRSSSSESPKLRHSAPLSSASSSPGCDTSRPTPPS---PSQLCAVCGDIAACQHYGVRTC 60
G+ S SP + + +SA G D + P +LC VCGD+A+ HYGV +C
Sbjct: 72 GKPQSPGSPDRQFCSSTTSAIGDFGSDGTNHDAIKEEIPRRLCLVCGDVASGFHYGVASC 131
Query: 61 EGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKG 120
E CK FFKRT+Q +Y C A C ++KRRR CQ CRF+KCL +GM+KE VR D ++G
Sbjct: 132 EACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFRKCLLMGMLKEGVRLDRVRG 191
Query: 121 RRGRLPSKP-----------KSPQESPPS-PPVSLITALYR-EPNPLEPPIAEPEKIQQF 167
R + P + Q +P S + ++ L EP+PL I ++
Sbjct: 192 GRQKYRRNPCANPYQLQLIQSNAQYTPQSLEDIKILEVLSSFEPDPLS--IGHGAELMNV 249
Query: 168 YSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQ 227
T+ V A + S ++S + +A Q+
Sbjct: 250 GDTDATTT-VGGSGAGQPSSSSMSSSSSTSSSSSASSSSSVGAAADSAVDRMAMGADAQE 308
Query: 228 FYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTK 283
S+L+ D + +A +IPGF+DL DQ L Q + EL L LAYR+ D +
Sbjct: 309 ILSVLSDIYDKELVGVIGWAKQIPGFTDLPLNDQMRLLQVSWAELLTLMLAYRSIPFDGR 368
Query: 284 LIFCNGVVLEKQQCQRSFGDDWLN 307
L F L+++ + D N
Sbjct: 369 LYFATDFWLDERSAKECGALDLYN 392
>gi|332259888|ref|XP_003279016.1| PREDICTED: oxysterols receptor LXR-alpha isoform 3 [Nomascus
leucogenys]
gi|441646637|ref|XP_004090760.1| PREDICTED: oxysterols receptor LXR-alpha [Nomascus leucogenys]
Length = 453
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 148/312 (47%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ YVC + CP+D
Sbjct: 90 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYVCHSGGHCPMD 149
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 150 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSL----- 198
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P PP P+ ++ ++ V + + FSD +
Sbjct: 199 -PPRASSPPQILPQLSREQLGMIEKLVAAQQQCNRR--SFSDRLRVT------------- 242
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 243 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 299
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 300 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 359
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 360 AEFALLIAISIF 371
>gi|327276012|ref|XP_003222765.1| PREDICTED: oxysterols receptor LXR-beta-like [Anolis carolinensis]
Length = 436
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 46/333 (13%)
Query: 21 SSASSSPGCDTSRPTPPSPSQL----CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSK 76
S+ S++ R P+P L C+VCGD A+ HY V +CEGCKGFF+R++ KG++
Sbjct: 50 STHSAAEEPTRKRKKGPAPKMLGDEVCSVCGDKASGFHYNVLSCEGCKGFFRRSIIKGAQ 109
Query: 77 YVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESP 136
Y C C +D R +CQ CR +KC Q GM +E V ++ ++ R + +
Sbjct: 110 YTCKGSGQCNMDLYMRRKCQECRLKKCRQAGMREECVLSEEQIRKKIRKQQEGEGASGGE 169
Query: 137 PS-------PPVSLITALYR-EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK---- 184
PP+ AL + EP+PL P + + IQQ + R F+D+
Sbjct: 170 GGAGEVLRVPPLPCDPALPQPEPDPLTP--QQEDMIQQLVAAQQQCNK--RSFSDQPKVT 225
Query: 185 -IPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
P SD PN E A ++ F L SV I FA
Sbjct: 226 PWPMGSD---------------------PNSRE---ARQQRFAHFTELAIISVQEIVDFA 261
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FG 302
++PGF L +EDQ L +++++E+ +L A R E + F K R+
Sbjct: 262 KQVPGFLHLSREDQIALLKASTIEIMLLETARRYNHETQCITFLKDFTYSKDDFHRAGLQ 321
Query: 303 DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+++N I EF +++ +++D + +A L A+ +
Sbjct: 322 VEFINPIFEFSRAMRQLQLDDAEYALLIAINIF 354
>gi|45360935|ref|NP_988866.1| estrogen receptor 1 precursor [Xenopus (Silurana) tropicalis]
gi|35396533|gb|AAQ84780.1| estrogen receptor alpha [Xenopus (Silurana) tropicalis]
Length = 543
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 143/298 (47%), Gaps = 30/298 (10%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 134 TRYCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 193
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLP-SKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
+KC +VGM+K +R D GR + K + Q++ +P T+++ P+
Sbjct: 194 LRKCYEVGMMKGGIRKDRRGGRMLKHKRQKEEQEQKNDVTPSEIRTTSIWVNPS------ 247
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
+ K+ SL T+ +I + P + Y E + +P
Sbjct: 248 VKSMKLSPVLSL--TAEQLISALMEAEP-------------------PIVYSEHDSTKP- 285
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
++E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 286 LSEASMMTLLTNLADKELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMVGLIWRSV 345
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL F ++L++ Q + G + + ++ +M + F CL ++ L+
Sbjct: 346 EHPGKLSFAPNLLLDRNQGRCVEGLVEIFDMLVTTATRFRMMRLRGEEFICLKSIILL 403
>gi|321474177|gb|EFX85143.1| hypothetical protein DAPPUDRAFT_46682 [Daphnia pulex]
Length = 382
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 157/304 (51%), Gaps = 23/304 (7%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C ++KRRR CQ
Sbjct: 11 APKRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQA 70
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPP 157
CRFQKC+++GM+KE VR D ++G GR + +P + P+ + A + +
Sbjct: 71 CRFQKCIRMGMLKEGVRLDRVRG--GRQKYRRVTPYTTTPASANNNAGA---QAGSTDSN 125
Query: 158 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNP--L 215
P+ +++ SL + RH +KI + L + + E+L ++++ + E + +
Sbjct: 126 NVNPQPVKKV-SLEGMQTRLSRH--NKI--LNTLGQCEPEML---TTVDILWPEGDASSM 177
Query: 216 EPPIAEPEKIQQFYSL-LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
+P + + + Y L ++ +A +IPGF ++ DQ L Q++ E+ L LA
Sbjct: 178 DPSLRILCTLSELYDRELVAAIG----WAKQIPGFLEMPLNDQMRLLQTSWPEVLTLSLA 233
Query: 275 YRT---RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
+R+ + + KL + + +++ + ++ ++ Q L + + + L A
Sbjct: 234 FRSIPLNSTNPKLQWSADFGMNEKEARECGMEELFFQCVQIAQRLEQLSVTREEYYLLKA 293
Query: 332 LTLI 335
L L+
Sbjct: 294 LVLV 297
>gi|340719095|ref|XP_003397992.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus terrestris]
gi|350396164|ref|XP_003484463.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus impatiens]
Length = 405
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 108/203 (53%), Gaps = 16/203 (7%)
Query: 16 HSAPLSSASSSPGCDTSRPTPPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
HS LS++ S + P PP+ LC++CGD A+ +HYGV +CEGCKGFFKRT
Sbjct: 57 HSNLLSTSPSGQN-KAAAPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 115
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
V+K Y C +K+C +DKR+RNRCQ+CR+QKCL +GM +E V+ + R R + +
Sbjct: 116 VRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEE-----RQRTKERDQ 170
Query: 131 SPQESPPS-----PPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
S ES S P ++ A R +E + + + + +A I
Sbjct: 171 SEVESTSSLHSDMPIERILEAEKRVECKMEQQGNYENAVSHICNATNKQLFQLVAWAKHI 230
Query: 186 PGFSDLCKEDQELLFQSASLELF 208
P F+ L EDQ LL ++ EL
Sbjct: 231 PHFTSLPLEDQVLLLRAGWNELL 253
>gi|390354650|ref|XP_784246.3| PREDICTED: retinoic acid receptor RXR [Strongylocentrotus
purpuratus]
Length = 479
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 106/191 (55%), Gaps = 7/191 (3%)
Query: 21 SSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCL 80
+ +S SPG S P +CAVCGD A+ +HYGV +CEGCKGFFKRTV+K Y C
Sbjct: 141 AQSSISPG---SMPGTSINKSICAVCGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYTCR 197
Query: 81 ADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP 140
D+ C VDKR+RNRCQ+CR+QKCL +GM +E V+ + + + S+ +S + P
Sbjct: 198 DDRNCMVDKRQRNRCQYCRYQKCLGMGMRREAVQEERQRKDKPTGDSQVESTSGTSNDMP 257
Query: 141 VSLI--TALYREPNPLEPPIAEP-EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 197
V I L EPN P + P + + + + +A +IP F++L +DQ
Sbjct: 258 VEKILDAELAVEPNN-GPYVDTPRDPVTNICQAADKQLFTLVEWAKRIPHFTELPLDDQV 316
Query: 198 LLFQSASLELF 208
L ++ EL
Sbjct: 317 TLLRAGWNELL 327
>gi|74136133|ref|NP_001027925.1| retinoic acid receptor alpha [Takifugu rubripes]
gi|4972008|emb|CAB43871.1| retinoic acid receptor alpha-2 [Takifugu rubripes]
gi|4995207|emb|CAB43979.1| retinoic acid receptor alpha-2 [Takifugu rubripes]
Length = 454
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 127/294 (43%), Gaps = 47/294 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C +K C ++K RNRCQ+CR QK
Sbjct: 87 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHREKNCIINKVTRNRCQYCRLQK 146
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL+VGM KE VR D N + +PE
Sbjct: 147 CLEVGMSKESVRNDR----------------------------------NKKKKDEKKPE 172
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA-E 221
I+ + T + R F LC+ + Y N E +A +
Sbjct: 173 CIENYVLSPDTEQMINRVRKAHQETFPSLCQLGK------------YTTTNSSERRVALD 220
Query: 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
+ +F L T + FA ++PGF L DQ L ++A L++ +LR+ R E
Sbjct: 221 VDLWDKFSELSTKCIIKTVEFAKQLPGFVTLTIADQITLLKAACLDILILRICTRYTPEQ 280
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ L+
Sbjct: 281 DTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLL 334
>gi|327275487|ref|XP_003222505.1| PREDICTED: retinoic acid receptor alpha-A-like isoform 2 [Anolis
carolinensis]
Length = 458
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 134/294 (45%), Gaps = 47/294 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 85 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 144
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPV-SLITALYREPNPLEPPIAEP 161
C +VGM KE VR D + ++ + K + + +P V LI + + P + +
Sbjct: 145 CFEVGMSKESVRND--RNKKKKDAPKQECSESYIITPEVEDLIEKVRKAHQETFPALCQL 202
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAE 221
K Y+ +S DQ + S ++L+
Sbjct: 203 GK----YTTNNSS--------------------DQRV---SLDIDLW------------- 222
Query: 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
+F L T + FA ++PGF+ L DQ L ++A L++ +LR+ R +
Sbjct: 223 ----DKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQ 278
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 279 DTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 332
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 103/214 (48%), Gaps = 22/214 (10%)
Query: 15 RHSAPLSSASSSPGCDTSRPTPPSPS--QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQ 72
HS S SS + PP P + C VC D ++ HYGV CEGCKGFF+R++Q
Sbjct: 55 NHSIETQSTSSEEIVPSPPSPPPLPRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQ 114
Query: 73 KGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSP 132
K Y C DK C ++K RNRCQ+CR QKC +VGM KE VR D + ++ + K +
Sbjct: 115 KNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRND--RNKKKKDAPKQECS 172
Query: 133 QESPPSPPV-SLITALYREPNPLEPPIAEPEKI-----------------QQFYSLLTTS 174
+ +P V LI + + P + + K +F L T
Sbjct: 173 ESYIITPEVEDLIEKVRKAHQETFPALCQLGKYTTNNSSDQRVSLDIDLWDKFSELSTKC 232
Query: 175 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ FA ++PGF+ L DQ L ++A L++
Sbjct: 233 IIKTVEFAKQLPGFTTLTIADQITLLKAACLDIL 266
>gi|205371750|sp|P49880.2|ECR_AEDAE RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone
receptor; Short=20E receptor; AltName: Full=EcRH;
Short=AaEcR; AltName: Full=Ecdysteroid receptor;
AltName: Full=Nuclear receptor subfamily 1 group H
member 1
gi|33621229|gb|AAQ23183.1| EcRA [Aedes aegypti]
Length = 776
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 141/317 (44%), Gaps = 26/317 (8%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
PTP +LC VCGD + HY TCEGCKGFF+R+V K + Y C AC +D R
Sbjct: 282 PTPRQQEELCLVCGDRESGYHYNALTCEGCKGFFRRSVTKNAVYCCKFGHACEMDMYMRR 341
Query: 94 RCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYR---- 149
+CQ CR +KCL VGM E V ++ + + K + + VS + YR
Sbjct: 342 KCQECRLKKCLAVGMRPECVVPENQCAIKRKEKKAQKEKDKVQTNATVSTTNSTYRSEIL 401
Query: 150 ------EPNPLEPPIAEPEKIQQ-----FYSLLTTS-VDVIRHFADKIPGFSDLCKEDQE 197
+P P + PEK+ Q LLT + + VI G+ +ED +
Sbjct: 402 PILMKCDPPPHQAIPLLPEKLLQENRLRNIPLLTANQMAVIYKLIWYQDGYEQPSEEDLK 461
Query: 198 LLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 257
+ + P E + + +V +I FA +P F+ + +EDQ
Sbjct: 462 RIMIGS----------PNEEEDQHDVHFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQ 511
Query: 258 ELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLH 317
L ++ S E+ +LR+A R A ++F N + + + D + +L FC+ +
Sbjct: 512 ITLLKACSSEVMMLRMARRYDAATDSILFANNRSYTRDSYRMAGMADTIEDLLHFCRQMF 571
Query: 318 LMEIDISAFACLCALTL 334
+ +D +A L A+ +
Sbjct: 572 SLTVDNVEYALLTAIVI 588
>gi|348527034|ref|XP_003451024.1| PREDICTED: nuclear receptor subfamily 4 group A member 3-like
[Oreochromis niloticus]
Length = 589
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E I FY LLT S++ R +A+++PGFS+L ++DQ LL SA LELFVLRLA+R+ +
Sbjct: 390 EHIHLFYRLLTISMETTRCWAERLPGFSELQRDDQNLLIDSAFLELFVLRLAHRSMLSED 449
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+FCNG+VL + QC R FG +WL++I EF L + +D SAFACL AL L+
Sbjct: 450 KLVFCNGLVLHRFQCLRGFG-EWLDSIQEFSAHLQNLNLDTSAFACLAALVLL 501
>gi|347360576|emb|CCA61271.1| retinoid X receptor, isoform S [Lithobius peregrinus]
Length = 305
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 94/172 (54%), Gaps = 9/172 (5%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
C++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C D+ C +DKR+RNRCQ+CR+
Sbjct: 3 HFCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDRNCVIDKRQRNRCQYCRY 62
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPS----PPVSLITALYREPNPLEP 156
QKCL +GM +E V+ + R R K ++ ES S P+ I P +
Sbjct: 63 QKCLSMGMKREAVQEE-----RQRNKEKNENEVESTSSIHNDMPLERILEAELRVEPKDE 117
Query: 157 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
I + + F + + +A IP F++L EDQ L ++ EL
Sbjct: 118 QIGDKNTMTNFCQAANQQLIQLVEWAKHIPHFTELPIEDQVTLLRAGWNELL 169
>gi|218156232|dbj|BAH03348.1| retinoic acid receptor 1 [Mordacia mordax]
Length = 305
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 133/288 (46%), Gaps = 40/288 (13%)
Query: 48 DIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVG 107
D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QKC +VG
Sbjct: 2 DKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKNTRNRCQYCRLQKCFEVG 61
Query: 108 MVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQF 167
M KE VR D K R+ + +SP+ P +S E E++
Sbjct: 62 MSKEAVRNDRNKKRK-EVVVVARSPEVPPERYELS----------------CEQEQL--- 101
Query: 168 YSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQ 227
VD IR + F LC+ + A + L+ + + +
Sbjct: 102 -------VDKIRKSHQET--FPSLCQLGKYTTNSCADHRV------QLDLGLWD-----K 141
Query: 228 FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFC 287
F L T + I FA ++PGF L DQ L ++A LE+ +LR+ R E + F
Sbjct: 142 FSELSTKCIVKIVEFAKRLPGFPSLTIADQITLLKAACLEILILRICTRHTPEQDTMTFS 201
Query: 288 NGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 202 DGLTLNRTQMHNAGFGPLTDYVFAFAAQLLPLEMDDAEAGLLSAICLI 249
>gi|18859345|ref|NP_571228.1| retinoic acid receptor RXR-alpha-B [Danio rerio]
gi|52783417|sp|Q90415.1|RXRAB_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-B;
AltName: Full=Retinoid X receptor alpha-B
gi|1046289|gb|AAC59719.1| retinoid X receptor [Danio rerio]
Length = 379
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 133/295 (45%), Gaps = 55/295 (18%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 52 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCMIDKRQRNRCQYCRY 111
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + R +K +S E E P+E I E
Sbjct: 112 QKCLAMGMKREAVQEE-------RQRAKERSEAE---------FGGCANEDMPVEK-ILE 154
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
E L E + + A+L PN I
Sbjct: 155 AE----------------------------LAVEPKTETYVEANLSPSANSPNDPVTNIC 186
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ Q F + +A +IP FSDL +DQ +L ++ EL + ++R+ A
Sbjct: 187 QAADKQLF---------TLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAV 237
Query: 281 DTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ G+ + + + G + + E + M++D + CL A+ L
Sbjct: 238 KDGILLATGLHVHRNSAHTAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 292
>gi|226316407|gb|ACO44667.1| ecdysteroid receptor isoform 3 [Crangon crangon]
Length = 358
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 146/324 (45%), Gaps = 33/324 (10%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
P P +LC VCGD A+ HY TCEGCKGFF+R++ K + Y C C +D R
Sbjct: 24 PIPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCEMDMYMRR 83
Query: 94 RCQFCRFQKCLQVGMVKEVVRTDS---LKGRRGRLPSKPKSPQESPPSPPVSLITALYRE 150
+CQ CR +KCL VGM E V +S +K + + K K S SP V +
Sbjct: 84 KCQECRLKKCLNVGMRPECVVPESQCQVKRDQKKAREKDKKDYPSVGSPIVE------EK 137
Query: 151 PNPLEP--PIAEPEKIQ--QFYSLLTTSVDVIRHF-ADKIPGFSDLCKEDQELLFQSASL 205
PL P P P + + + S + ++ G L E QEL+
Sbjct: 138 HTPLSPCKPKGSPSSASAPAYKNSYSGSSISLSPLPMTRLSGVKPLTHEQQELIHT---- 193
Query: 206 ELFYREPNPLEPPIAEPEKI--------------QQFYSLLTTSVDVIRHFADKIPGFSD 251
L Y + +P + +KI + + +V +I F+ ++PGF
Sbjct: 194 -LVYYQEEFEQPSETDLKKIKFTFDGEDTSDLRFKHITEMTILTVQLIVEFSKQLPGFDT 252
Query: 252 LCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILE 311
L +EDQ L ++ S E+ +LR A R A ++F N + + + + AI +
Sbjct: 253 LQREDQITLLKACSSEVMMLRAARRYDANTDSIVFGNNYPYTQDSYESAGLGESAAAIFQ 312
Query: 312 FCQSLHLMEIDISAFACLCALTLI 335
FC++L M++D + +A L A+ +
Sbjct: 313 FCRNLCKMKVDNAEYALLAAIAIF 336
>gi|154183751|gb|ABS70716.1| retinoid X receptor b isoform [Nucella lapillus]
Length = 446
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 101/198 (51%), Gaps = 20/198 (10%)
Query: 22 SASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLA 81
+ SS+PG P +CA+CGD A+ +HYGV +CEGCKGFFKRTV+K Y C
Sbjct: 103 TGSSTPGM----PHSGLSKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRD 158
Query: 82 DKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPV 141
DK C +DKR+RNRCQFCR+ KCL GM +E + +++ R R+ K ES
Sbjct: 159 DKNCMIDKRQRNRCQFCRYMKCLAQGMKREACLSTAVQEERQRVKEKGDGEVESTSGANS 218
Query: 142 SLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK-----------IPGFSD 190
+ + LE +A KI + + V I ADK IP F +
Sbjct: 219 DMPVE-----HVLEAEVAVGPKIDTYVDVQKDPVTNICQAADKQLFTLVEWAKRIPHFIE 273
Query: 191 LCKEDQELLFQSASLELF 208
L EDQ +L ++ EL
Sbjct: 274 LPLEDQVILLRAGWNELL 291
>gi|332259884|ref|XP_003279014.1| PREDICTED: oxysterols receptor LXR-alpha isoform 1 [Nomascus
leucogenys]
Length = 447
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 148/312 (47%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ YVC + CP+D
Sbjct: 84 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYVCHSGGHCPMD 143
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 144 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSL----- 192
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P PP P+ ++ ++ V + + FSD +
Sbjct: 193 -PPRASSPPQILPQLSREQLGMIEKLVAAQQQCNRR--SFSDRLRVT------------- 236
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 237 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 293
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 294 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 353
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 354 AEFALLIAISIF 365
>gi|293628874|dbj|BAJ05031.1| estrogen receptor alpha [Amietophrynus rangeri]
Length = 580
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 152/336 (45%), Gaps = 33/336 (9%)
Query: 1 TQLGRSSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTC 60
T RS S +L S+ +P ++S+ T + CAVC D A+ HYGV +C
Sbjct: 140 TTYYRSGSDNRRQLGRERISSNDKGTPPMESSKET-----RYCAVCSDYASGYHYGVWSC 194
Query: 61 EGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKG 120
EGCK FFKR++Q + Y+C A C +DK RR CQ CR +KC +VGM+K +R D G
Sbjct: 195 EGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRRGG 254
Query: 121 RRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH 180
R + + K Q+ S I R + P + K+ SL T+ +I
Sbjct: 255 RMIK-HKRQKDEQDQKNDGNTSEI----RTASIWVNPTVKSMKLSPVLSL--TAEQLISA 307
Query: 181 FADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIR 240
+ P + Y E + +P +E + +L + +
Sbjct: 308 LMEAEP-------------------PIVYSEHDSTKP-FSEASMMTLLTNLADKELVHMI 347
Query: 241 HFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS 300
++A ++PGF DL DQ L + A LE+ ++ L +R+ KL F ++L++ Q +
Sbjct: 348 NWAKRVPGFVDLTLHDQVHLLECAWLEILMVGLIWRSVEHPGKLSFAPNLLLDRNQGRCV 407
Query: 301 FG-DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + ++ +M + F CL ++ L+
Sbjct: 408 EGLVEIFDMLVTTATRFRMMRLRGEEFICLKSIILL 443
>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens]
Length = 516
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
S+ SP+L S+P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 142 STGSPQL--SSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 199
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 200 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 259
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G+ R ++ +S + PV I T Y E N P + +
Sbjct: 260 QEERQRGKD-RNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDP 318
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 319 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 363
>gi|419590185|dbj|BAM66778.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 539
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 99/177 (55%), Gaps = 8/177 (4%)
Query: 37 PSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQ 96
P +CAVCGD A+ +HYGV +CEGC+GFFKRTV+K Y C K C +DKR+RNRCQ
Sbjct: 186 PMAKHICAVCGDRASGKHYGVYSCEGCEGFFKRTVRKDLSYTCRDSKDCVIDKRQRNRCQ 245
Query: 97 FCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPN---- 152
+CR+QKCL +GM +E V+ + K + + +P +P + P + L L +P
Sbjct: 246 YCRYQKCLAMGMKREAVQEERQKNKE-KEDGEPANPNDDMPVDKI-LEAELISDPKVEQV 303
Query: 153 -PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P E + E + + + + +A +IP FS L EDQ +L ++ EL
Sbjct: 304 VPSE-QVNENDPVSNICKAADRQLVTLVEWAKRIPHFSSLPLEDQVILLRAGWNELL 359
>gi|189055347|dbj|BAG36116.1| unnamed protein product [Homo sapiens]
Length = 447
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 146/312 (46%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ Y+C + CP+D
Sbjct: 84 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGHCPMD 143
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E +L + RL K QE + SL
Sbjct: 144 TYMRRKCQECRLRKCRQAGMREEC----ALSEEQIRL--KKLKRQEEEQAHATSLPPRAS 197
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P L P PE++ L+ R FSD +
Sbjct: 198 SPPQIL--PQLSPEQLGMIEKLVAAQQQCNRR------SFSDRLRVT------------- 236
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 237 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 293
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 294 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 353
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 354 AEFALLIAISIF 365
>gi|332259886|ref|XP_003279015.1| PREDICTED: oxysterols receptor LXR-alpha isoform 2 [Nomascus
leucogenys]
Length = 402
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 148/312 (47%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ YVC + CP+D
Sbjct: 39 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYVCHSGGHCPMD 98
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 99 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSL----- 147
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P PP P+ ++ ++ V + + FSD +
Sbjct: 148 -PPRASSPPQILPQLSREQLGMIEKLVAAQQQCNRR--SFSDRLRVT------------- 191
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 192 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 248
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 249 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 308
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 309 AEFALLIAISIF 320
>gi|35396541|gb|AAQ84784.1| estrogen receptor alpha 1 delta exon 1 [Xenopus laevis]
Length = 427
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 141/306 (46%), Gaps = 33/306 (10%)
Query: 36 PPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKR 90
PPS ++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK
Sbjct: 9 PPSMESTKETRYCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKN 68
Query: 91 RRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYRE 150
RR CQ CR +KC +VGM+K +R D R GR+ + +E V
Sbjct: 69 RRKSCQACRLRKCYEVGMMKGGIRKDR---RGGRMLKHKRQKEEQEQKNDV--------- 116
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYR 210
+P +I+ + SV + K+ L E A + Y
Sbjct: 117 ---------DPSEIRTASIWVNPSVKSM-----KLSPVLSLTAEQLISALMEAEPPIVYS 162
Query: 211 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFV 270
E + +P ++E + +L + + ++A ++PGF DL DQ L + A LE+ +
Sbjct: 163 EHDSTKP-LSEASMMTLLTNLADKELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILM 221
Query: 271 LRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISAFACL 329
+ L +R+ KL F ++L++ Q + G + + ++ +M + F CL
Sbjct: 222 VGLIWRSVEHPGKLSFAPNLLLDRNQGRCVEGLVEIFDMLVTTATRFRMMRLRGEEFICL 281
Query: 330 CALTLI 335
++ L+
Sbjct: 282 KSIILL 287
>gi|410921388|ref|XP_003974165.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like [Takifugu
rubripes]
Length = 462
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 116/218 (53%), Gaps = 20/218 (9%)
Query: 2 QLGRSSSSES----PKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGV 57
Q+ +SSE P L + ++ S+SPG + +C++CGD ++ +HYGV
Sbjct: 101 QMNSMNSSEDIKPPPGLHNLGNINYQSTSPGGISK--------HICSICGDRSSGKHYGV 152
Query: 58 RTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS 117
+CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ +
Sbjct: 153 YSCEGCKGFFKRTVRKDLTYTCRDNKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 212
Query: 118 LKGRRGRLPSKPKSPQESPPSPPVSLI--TALYREP-----NPLEPPIAEPEKIQQFYSL 170
+GR R S+ +S PV I L EP N P + + +
Sbjct: 213 QRGRE-RGDSEVESTSGFNEDMPVDKILDAELAVEPKTETYNEGIPSNSTNDPVTNICQA 271
Query: 171 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + +A +IP FS+L +DQ +L ++ EL
Sbjct: 272 ADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 309
>gi|431919411|gb|ELK17930.1| Retinoic acid receptor beta [Pteropus alecto]
Length = 448
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 131/293 (44%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE S++ R + +P S QE S Y L+ +
Sbjct: 141 CFEVGMSKE-----SVRNDRNKKKKEP-SKQECMES---------YEMTAELDDLTEKIR 185
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + SA + L+ + +
Sbjct: 186 KAHQ-------------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTSLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|45479152|gb|AAS66637.1| estrogen-related receptor delta [Danio rerio]
Length = 344
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 129/298 (43%), Gaps = 45/298 (15%)
Query: 37 PSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQ 96
P P +LC VCGD A+ HYGV +CE CK FFKRT+Q +Y C C + KRRR CQ
Sbjct: 8 PGPKRLCLVCGDFASGYHYGVASCEACKAFFKRTIQGNIEYSCPVVNDCEITKRRRKSCQ 67
Query: 97 FCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEP 156
CRFQKCL+ GM++E VR D ++G R + + S + V TA Y N
Sbjct: 68 ACRFQKCLRAGMMREGVRMDRVRGGRQKYKRRVDS------TLSVFSKTA-YTHAN---- 116
Query: 157 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLE 216
+P + + LL V +R D SDL
Sbjct: 117 ---KPIRNRLICELLLCEVTPLRAAPDSSTPDSDL------------------------- 148
Query: 217 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
+ + LL + V+ +A IPGF L DQ L QS +E +L +A+R
Sbjct: 149 ------KTLMTLCDLLNRELLVMIGWAKHIPGFCALSLLDQMALLQSGWMETLLLNVAWR 202
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++A +L F + L + Q + + D A+ M + F L A+ L
Sbjct: 203 SQALAEELQFAENLRLNESQSRAAGLHDLYTALRHLTCRYQQMSLKQEEFIILKAMAL 260
>gi|83638436|gb|ABC33911.1| retinoid X receptor alpha transcript variant 1 [Sus scrofa]
Length = 374
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 27/222 (12%)
Query: 11 SPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQHYG 56
SP+L S+P++ SSS G + P PS +CA+CGD ++ +HYG
Sbjct: 3 SPQL--SSPMNPVSSSEDIKPPLGINGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYG 60
Query: 57 VRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTD 116
V +CEGCKGFFKRT +K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ +
Sbjct: 61 VYSCEGCKGFFKRTARKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEE 120
Query: 117 SLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEKIQQ 166
+G + R ++ +S + PV I T Y E N P + + +
Sbjct: 121 RQRG-KDRGENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANVGLNPSSPNDPVTN 179
Query: 167 FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + +A ++P FS+L +DQ +L ++ EL
Sbjct: 180 ICQAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELL 221
>gi|58585210|ref|NP_001011634.1| ultraspiracle [Apis mellifera]
gi|8118613|gb|AAF73057.1|AF263459_1 ultraspiracle protein [Apis mellifera]
gi|30691980|gb|AAP33487.1| ultraspiracle protein [Apis mellifera]
Length = 427
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 108/203 (53%), Gaps = 16/203 (7%)
Query: 16 HSAPLSSASSSPGCDTSRPTPPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
HS LS++ S + P PP+ LC++CGD A+ +HYGV +CEGCKGFFKRT
Sbjct: 79 HSNLLSTSPSGQNKAVA-PYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 137
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
V+K Y C +K+C +DKR+RNRCQ+CR+QKCL +GM +E V+ + R R + +
Sbjct: 138 VRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEE-----RQRTKERDQ 192
Query: 131 SPQESPPS-----PPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
S ES S P ++ A R +E + + + + +A I
Sbjct: 193 SEVESTSSLHSDMPIERILEAEKRVECKMEQQGNYENAVSHICNATNKQLFQLVAWAKHI 252
Query: 186 PGFSDLCKEDQELLFQSASLELF 208
P F+ L EDQ LL ++ EL
Sbjct: 253 PHFTSLPLEDQVLLLRAGWNELL 275
>gi|355715379|gb|AES05308.1| retinoic acid receptor, beta [Mustela putorius furo]
Length = 333
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 136/296 (45%), Gaps = 48/296 (16%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + PSK + + + + +T E
Sbjct: 141 CFEVGMSKESVRND--RNKKKKEPSKQECAESYEMTAELDDLT----------------E 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 183 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSD---LCKEDQELLFQSASLELFVLRLAYRTRA 279
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGFTGLTIADQITLLKAACLDILILRICTRYTP 275
Query: 280 EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
E + F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 EQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 331
>gi|444730607|gb|ELW70985.1| Retinoic acid receptor RXR-gamma [Tupaia chinensis]
Length = 425
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 138/318 (43%), Gaps = 70/318 (22%)
Query: 27 PGCDTSRPTPPSPSQL----CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAD 82
PG + SP L CA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C
Sbjct: 81 PGIGSMNYPSTSPGSLVKHVCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDS 140
Query: 83 KACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVS 142
K C +DKR+RNRCQ+CR+QKCL +GM +E V+ + + R R S+ + PV
Sbjct: 141 KDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRE-RADSEVECTSGGHEDMPVE 199
Query: 143 LITALYREPNPLEPPIAEPEKIQQFYSLLTTS-----VDVIRHFADKIPGFSDLCKEDQE 197
I LE +A K + + + + V I H ADK
Sbjct: 200 RI---------LEAELAVEPKTESYGDMNMENSTNDPVTNICHAADK------------- 237
Query: 198 LLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 257
Q ++L+ +A +IP FS L EDQ
Sbjct: 238 -----------------------------QLFTLV--------EWAKRIPHFSGLTLEDQ 260
Query: 258 ELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSL 316
+L ++ EL + ++R+ + ++ G+ + + + G + + E +
Sbjct: 261 VILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKM 320
Query: 317 HLMEIDISAFACLCALTL 334
M++D S CL A+ L
Sbjct: 321 KDMQMDKSELGCLRAIVL 338
>gi|226316405|gb|ACO44666.1| ecdysteroid receptor isoform 2 [Crangon crangon]
Length = 376
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 145/343 (42%), Gaps = 53/343 (15%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
P P +LC VCGD A+ HY TCEGCKGFF+R++ K + Y C C +D R
Sbjct: 24 PIPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCEMDMYMRR 83
Query: 94 RCQFCRFQKCLQVGMVKEVV--------RTDSLKGRRG----------------RLPSKP 129
+CQ CR +KCL VGM E V + D K R P P
Sbjct: 84 KCQECRLKKCLNVGMRPECVVPESQCQVKRDQKKAREKDKKDYPSVGSPIVEEKHTPLSP 143
Query: 130 KSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA---DKIP 186
P+ SP S Y + P+ P + + +S + R ++
Sbjct: 144 CKPKGSPSSASAPAYKNSYSGSSISLSPMNWPHEKE-------SSEEEGRQLKLPMTRLS 196
Query: 187 GFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQ--------------QFYSLL 232
G L E QEL+ L Y + +P + +KI+ +
Sbjct: 197 GVKPLTHEQQELIHT-----LVYYQEEFEQPSETDLKKIKFTFDGEDTSDLRFKHITEMT 251
Query: 233 TTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVL 292
+V +I F+ ++PGF L +EDQ L ++ S E+ +LR A R A ++F N
Sbjct: 252 ILTVQLIVEFSKQLPGFDTLQREDQITLLKACSSEVMMLRAARRYDANTDSIVFGNNYPY 311
Query: 293 EKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + + + AI +FC++L M++D + +A L A+ +
Sbjct: 312 TQDSYESAGLGESAAAIFQFCRNLCKMKVDNAEYALLAAIAIF 354
>gi|56608614|gb|AAW02952.1| ultraspiracle [Melipona scutellaris]
Length = 427
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 107/203 (52%), Gaps = 16/203 (7%)
Query: 16 HSAPLSSASSSPGCDTSRPTPPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
HS LS++ S + P PP+ LC++CGD A+ +HYGV +CEGCKGFFKRT
Sbjct: 79 HSNLLSTSPSGQNKAVA-PYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 137
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
V+K Y C +K+C +DKR+RNRCQ+CR+QKCL +GM +E V + R R + +
Sbjct: 138 VRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVHEE-----RQRTKERDQ 192
Query: 131 SPQESPPS-----PPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
S ES S P ++ A R +E + + + + +A I
Sbjct: 193 SEVESTSSLHSDMPIERILEAEKRVECKMEQQGNYENAVSHICNATNKQLFQLVAWAKHI 252
Query: 186 PGFSDLCKEDQELLFQSASLELF 208
P F+ L EDQ LL ++ EL
Sbjct: 253 PHFTSLPLEDQVLLLRAGWNELL 275
>gi|426363508|ref|XP_004048881.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Gorilla gorilla
gorilla]
Length = 365
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 36 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 95
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYRE 150
QKCL +GM +E V+ + +G + R ++ +S + PV I T Y E
Sbjct: 96 QKCLAMGMKREAVQEERQRG-KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVE 154
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
N P + + + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 155 ANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 212
>gi|397503782|ref|XP_003822498.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Pan paniscus]
gi|402896147|ref|XP_003911168.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Papio anubis]
gi|410043384|ref|XP_520345.4| PREDICTED: retinoic acid receptor RXR-alpha [Pan troglodytes]
gi|193785958|dbj|BAG54745.1| unnamed protein product [Homo sapiens]
Length = 365
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 36 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 95
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYRE 150
QKCL +GM +E V+ + +G + R ++ +S + PV I T Y E
Sbjct: 96 QKCLAMGMKREAVQEERQRG-KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVE 154
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
N P + + + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 155 ANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 212
>gi|146328613|sp|O18531.2|ECR_LUCCU RecName: Full=Ecdysone receptor; AltName: Full=20-hydroxy-ecdysone
receptor; Short=20E receptor; AltName: Full=EcRH;
AltName: Full=Ecdysteroid receptor; AltName:
Full=Nuclear receptor subfamily 1 group H member 1
gi|77747324|gb|AAB81130.2| ecdysteroid receptor [Lucilia cuprina]
Length = 757
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 147/346 (42%), Gaps = 26/346 (7%)
Query: 4 GRSSSSESPKLRHSAPLSSASSSPGCDTSR----PTPPSPSQLCAVCGDIAACQHYGVRT 59
S SS L S+ L+ S+S D + P P +LC VCGD A+ HY T
Sbjct: 258 ANSISSGRDDLSPSSSLNGFSTSDASDVKKIKKGPAPRLQEELCLVCGDRASGYHYNALT 317
Query: 60 CEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLK 119
CEGCKGFF+R+V K + Y C AC +D R +CQ CR +KCL VGM E V ++
Sbjct: 318 CEGCKGFFRRSVTKNAVYCCKFGHACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQC 377
Query: 120 GRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE-----PEKI------QQFY 168
+ R K + S + I + EPP PE I +
Sbjct: 378 AMKRREKKAQKEKDKIQTSVCATEIKKEILDLMTCEPPSHPTCPLLPEDILAKCQARNIP 437
Query: 169 SLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQF 228
L + VI G+ +ED + + S P E +
Sbjct: 438 PLSYNQLAVIYKLIWYQDGYEQPSEEDLKRIMSS-----------PDENESQHDASFRHI 486
Query: 229 YSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCN 288
+ +V +I FA +P F+ + +EDQ L ++ S E+ +LR+A R + F N
Sbjct: 487 TEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHNSDSIFFAN 546
Query: 289 GVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + + D + +L FC+ ++ M++D +A L A+ +
Sbjct: 547 NRSYTRDSYKMAGMADNIEDLLHFCRQMYSMKVDNVEYALLTAIVI 592
>gi|403301502|ref|XP_003941427.1| PREDICTED: retinoic acid receptor RXR-alpha [Saimiri boliviensis
boliviensis]
Length = 365
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 36 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 95
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYRE 150
QKCL +GM +E V+ + +G + R ++ +S + PV I T Y E
Sbjct: 96 QKCLAMGMKREAVQEERQRG-KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVE 154
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
N P + + + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 155 ANVGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 212
>gi|449478039|ref|XP_002196179.2| PREDICTED: retinoic acid receptor RXR-alpha [Taeniopygia guttata]
Length = 439
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
+ SP+L ++P++S +S+ G + P PS +CA+CGD ++ +
Sbjct: 65 GTSSPQL--NSPMNSVTSTEDIKPPLGLNGVLKVPAHPSGTMASFTKHICAICGDRSSGK 122
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 123 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 182
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G+ R ++ +S + PV I T Y E N P + +
Sbjct: 183 QEERQRGKD-RNENEVESTSSANEDMPVEKILEAELAVEPKTETYIEANMGLTPSSPNDP 241
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 242 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 286
>gi|410925156|ref|XP_003976047.1| PREDICTED: retinoic acid receptor alpha-B-like [Takifugu rubripes]
Length = 478
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 127/294 (43%), Gaps = 47/294 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ CR QK
Sbjct: 97 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKVCVINKVTRNRCQSCRLQK 156
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
CL VGM +E+VR D +K ++P +E + +
Sbjct: 157 CLDVGMSRELVRNDRMK------------------------KKKDEKKPAEVETYVLSAD 192
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
Q V R D P L K Y N E ++
Sbjct: 193 TEQMIER-------VRRAHQDTFPSLCQLGK---------------YTTSNSSEHRVSLD 230
Query: 223 EKIQQFYSLLTTSVDV-IRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED 281
+ +S L+T + FA ++PGF+ L DQ L ++A L++ +LR+ R +
Sbjct: 231 VSLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPDQ 290
Query: 282 TKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ L+
Sbjct: 291 DTMTFSDGLTLNRTQMHNAGFGPLTDLVFSFASQLLPLEMDDAETGLLSAICLL 344
>gi|305690676|gb|ADM64635.1| ultraspiracle protein [Bactrocera dorsalis]
Length = 453
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 101/189 (53%), Gaps = 25/189 (13%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C D+ C +DKR+RNRCQ+CR+
Sbjct: 95 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRNCIIDKRQRNRCQYCRY 154
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITA-------------- 146
QKCL GM +E V+ + +G R + +S + PS V +T
Sbjct: 155 QKCLACGMKREAVQEERQRGTRSQ---NVRSSDDFNPSSSVRDLTIERIIEAEQKSEQLS 211
Query: 147 -------LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL 199
L PN + P + + ++ + + +A K+P F++L +EDQ LL
Sbjct: 212 GDNAIPFLRVGPNSMVQPDYKG-AVSHLCQMVNKQLYQMVEYARKMPHFAELQREDQVLL 270
Query: 200 FQSASLELF 208
++ EL
Sbjct: 271 LKAGWNELL 279
>gi|441623802|ref|XP_003279685.2| PREDICTED: retinoic acid receptor RXR-alpha [Nomascus leucogenys]
Length = 418
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 116/217 (53%), Gaps = 42/217 (19%)
Query: 6 SSSSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAA 51
+S+S +P+L S+P++ SSS G + P PS +CA+CGD ++
Sbjct: 77 ASASGTPRL--SSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSS 134
Query: 52 CQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKE 111
+HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E
Sbjct: 135 GKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKRE 194
Query: 112 VVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLL 171
V+ + + R G ++ P+ PV+ I +Q ++L+
Sbjct: 195 AVQEERQRARTG---TRMXXXXXXXPNDPVTNICQ---------------AADKQLFTLV 236
Query: 172 TTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+A +IP FS+L +DQ +L ++ EL
Sbjct: 237 --------EWAKRIPHFSELPLDDQVILLRAGWNELL 265
>gi|54695692|gb|AAV38218.1| nuclear receptor subfamily 1, group H, member 3 [Homo sapiens]
Length = 447
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 148/312 (47%), Gaps = 39/312 (12%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ Y+C + CP+D
Sbjct: 84 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYICHSGGHCPMD 143
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALY 148
R +CQ CR +KC Q GM +E V ++ ++ K QE + SL
Sbjct: 144 TYMRRKCQECRLRKCRQAGMREECVLSEE------QIRLKKLKRQEEEQAHATSL----- 192
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P PP P+ ++ ++ V + + FSD +
Sbjct: 193 -PPRASSPPQILPQLSREQLGMIEKLVAAQQQCNRR--SFSDRLRVT------------- 236
Query: 209 YREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++
Sbjct: 237 ---PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTS 293
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDI 323
++E+ +L + R + F ++ ++ +++N I EF ++++ ++++
Sbjct: 294 AIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLND 353
Query: 324 SAFACLCALTLI 335
+ FA L A+++
Sbjct: 354 AEFALLIAISIF 365
>gi|343113489|gb|AEL87703.1| retinoid X receptor alpha [Strongylocentrotus nudus]
Length = 481
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 106/191 (55%), Gaps = 7/191 (3%)
Query: 21 SSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCL 80
+ +S SPG S P +CAVCGD A+ +HYGV +CEGCKGFFKRTV+K Y C
Sbjct: 143 AQSSISPG---SMPGTSINKSICAVCGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYTCR 199
Query: 81 ADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP 140
D+ C VDKR+RNRCQ+CR+QKC+ +GM +E V+ + + + S+ +S + P
Sbjct: 200 DDRNCMVDKRQRNRCQYCRYQKCIGMGMRREAVQEERQRKDKPTGDSQVESTSGTSNDMP 259
Query: 141 VSLI--TALYREPNPLEPPIAEP-EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 197
V I L EPN P + P + + + + +A +IP F++L +DQ
Sbjct: 260 VEKILDAELAVEPNN-GPYVDTPRDPVTNICQAADKQLFTLVEWAKRIPHFTELPLDDQV 318
Query: 198 LLFQSASLELF 208
L ++ EL
Sbjct: 319 TLLRAGWNELL 329
>gi|32026|emb|CAA68398.1| unnamed protein product [Homo sapiens]
Length = 448
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 130/293 (44%), Gaps = 45/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE S++ R + K S QE S Y L+ +
Sbjct: 141 CFEVGMSKE-----SVRNDRNK-KKKETSKQECTES---------YEMTAELDDLTEKIR 185
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + SA + L+ + +
Sbjct: 186 KAHQ-------------------ETFPSLCQLAKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 276 TMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 328
>gi|242008309|ref|XP_002424949.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212508563|gb|EEB12211.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 420
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 106/206 (51%), Gaps = 1/206 (0%)
Query: 4 GRSSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQ-LCAVCGDIAACQHYGVRTCEG 62
G +S S + HS+ + + S++ P S S+ LC++CGD A+ +HYGV +CEG
Sbjct: 63 GGPNSPNSFTMGHSSLIGNNSNNKMASYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEG 122
Query: 63 CKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRR 122
CKGFFKRTV+K Y C ++ C +DKR+RNRCQFCR+ KCL +GM +E V+ + + +
Sbjct: 123 CKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQFCRYNKCLAMGMKREAVQEERQRTKE 182
Query: 123 GRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 182
S P ++ A R +E + T + + +A
Sbjct: 183 REQGEVESSGAMQADMPVERILEAEKRVECKVENQNEYENAVANICQATNTQLYQLVEWA 242
Query: 183 DKIPGFSDLCKEDQELLFQSASLELF 208
IP FS L EDQ LL ++ EL
Sbjct: 243 KHIPHFSSLPIEDQVLLLRAGWNELL 268
>gi|444518523|gb|ELV12209.1| Retinoic acid receptor RXR-alpha [Tupaia chinensis]
Length = 386
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
+ SP+L S+P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 12 GTASPQL--SSPMNPVSSSEDVKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 69
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 70 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 129
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G + R S+ + + PV I T Y E N P + +
Sbjct: 130 QEERQRG-KDRNESEVEPTSSANEDMPVEKILEAELAVEPKTDTYVEANMGLSPSSPNDP 188
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A ++P FS+L +DQ +L ++ EL
Sbjct: 189 VTNICQAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELL 233
>gi|390432209|gb|AFL91696.1| retinoid X receptor isoform a [Azumapecten farreri]
Length = 446
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 104/196 (53%), Gaps = 17/196 (8%)
Query: 25 SSPGCDTSRPTPPSP------SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV 78
SPG +S P P P +CA+CGD A+ +HYGV +CEGCKGFFKRTV+K Y
Sbjct: 103 GSPGSVSSPPNPHMPHTTLSSKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYA 162
Query: 79 CLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPS 138
C D+ C +DKR+RNRCQ+CR+ KCL +GM +E V+ + R R+ K + ES S
Sbjct: 163 CRDDRNCVIDKRQRNRCQYCRYMKCLAMGMKREAVQEE-----RQRVKEKGEGEVESTSS 217
Query: 139 P----PVSLITALYREPNPLEPPIAEPEK--IQQFYSLLTTSVDVIRHFADKIPGFSDLC 192
PV + +P + +K + + + +A +IP F++L
Sbjct: 218 ANSDMPVEKVLDAELSVDPKLDTYIDTQKDPVTNICQAADKQLFTLVAWARRIPHFTELP 277
Query: 193 KEDQELLFQSASLELF 208
EDQ +L ++ EL
Sbjct: 278 LEDQVILLRAGWNELL 293
>gi|325930183|gb|ADZ45550.1| retinoid X receptor alpha [Taeniopygia guttata]
Length = 467
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
+ SP+L ++P++S +S+ G + P PS +CA+CGD ++ +
Sbjct: 93 GTSSPQL--NSPMNSVTSTEDIKPPLGLNGVLKVPAHPSGTMASFTKHICAICGDRSSGK 150
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 151 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 210
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G+ R ++ +S + PV I T Y E N P + +
Sbjct: 211 QEERQRGKD-RNENEVESTSSANEDMPVEKILEAELAVEPKTEAYIEANMGLTPSSPNDP 269
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 314
>gi|28574950|ref|NP_648183.3| estrogen-related receptor, isoform B [Drosophila melanogaster]
gi|17225792|gb|AAL37554.1|AF359421_1 estrogen-related receptor splice variant [Drosophila melanogaster]
gi|23093931|gb|AAN12015.1| estrogen-related receptor, isoform B [Drosophila melanogaster]
Length = 496
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 132/268 (49%), Gaps = 33/268 (12%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A+ C ++KRRR CQ CRF
Sbjct: 125 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPANNECEINKRRRKACQACRF 184
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSP---------QESPPSP-PVSLITALYR- 149
QKCL +GM+KE VR D ++G R + P S Q + S V ++ L
Sbjct: 185 QKCLLMGMLKEGVRLDRVRGGRQKYRRNPVSNSYQTMQLLYQSNTTSLCDVKILEVLNSY 244
Query: 150 EPNPLEPPIAEPEKIQQFYSLLTTSV--DVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
EP+ L P+ + TTS+ D + I S + + +FQ+ +
Sbjct: 245 EPDALSVQTPPPQ-------VHTTSITNDEASSSSGSIKLESSVVTPNGTCIFQNNNNN- 296
Query: 208 FYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 267
+PN + +++ + + + +A +IPGF DL DQ L Q + E
Sbjct: 297 ---DPNEILSVLSD---------IYDKELVSVIGWAKQIPGFIDLPLNDQMKLLQVSWAE 344
Query: 268 LFVLRLAYRTRAEDTKLIFCNGVVLEKQ 295
+ L+L +R+ + KL F V +++
Sbjct: 345 ILTLQLTFRSLPFNGKLCFATDVWMDEH 372
>gi|395832129|ref|XP_003789128.1| PREDICTED: retinoic acid receptor RXR-beta [Otolemur garnettii]
Length = 532
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 134/296 (45%), Gaps = 52/296 (17%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LCA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C VDKR+RNRCQ+CR+
Sbjct: 202 RLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRY 261
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL GM +E V+ + +G+ + + +P PV I LE +A
Sbjct: 262 QKCLATGMKREAVQEERQRGK--DKDADGEGAGGAPEEMPVDRI---------LEAELAV 310
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
+K Q + D + +++C Q+A +LF
Sbjct: 311 EQKSDQGVESPGGTGGSGSSPNDPV---TNIC--------QAADKQLF------------ 347
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ +A +IP FS L +DQ +L ++ EL + ++R+
Sbjct: 348 -----------------TLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDV 390
Query: 281 DTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
++ G+ + + + G + + E + M +D + CL A+ L
Sbjct: 391 RDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILF 446
>gi|226316403|gb|ACO44665.1| ecdysteroid receptor isoform 1 [Crangon crangon]
Length = 440
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 145/343 (42%), Gaps = 53/343 (15%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
P P +LC VCGD A+ HY TCEGCKGFF+R++ K + Y C C +D R
Sbjct: 24 PIPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCEMDMYMRR 83
Query: 94 RCQFCRFQKCLQVGMVKEVV--------RTDSLKGRRG----------------RLPSKP 129
+CQ CR +KCL VGM E V + D K R P P
Sbjct: 84 KCQECRLKKCLNVGMRPECVVPESQCQVKRDQKKAREKDKKDYPSVGSPIVEEKHTPLSP 143
Query: 130 KSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHF---ADKIP 186
P+ SP S Y + P+ P + + +S + R ++
Sbjct: 144 CKPKGSPSSASAPAYKNSYSGSSISLSPMNWPHEKE-------SSEEEGRQLKLPMTRLS 196
Query: 187 GFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQ--------------QFYSLL 232
G L E QEL+ L Y + +P + +KI+ +
Sbjct: 197 GVKPLTHEQQELIHT-----LVYYQEEFEQPSETDLKKIKFTFDGEDTSDLRFKHITEMT 251
Query: 233 TTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVL 292
+V +I F+ ++PGF L +EDQ L ++ S E+ +LR A R A ++F N
Sbjct: 252 ILTVQLIVEFSKQLPGFDTLQREDQITLLKACSSEVMMLRAARRYDANTDSIVFGNNYPY 311
Query: 293 EKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + + + AI +FC++L M++D + +A L A+ +
Sbjct: 312 TQDSYESAGLGESAAAIFQFCRNLCKMKVDNAEYALLAAIAIF 354
>gi|355752946|gb|EHH56992.1| hypothetical protein EGM_06542, partial [Macaca fascicularis]
Length = 453
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
S+ SP+L S+P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 79 STGSPQL--SSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 136
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRC++CR+QKCL +GM +E V
Sbjct: 137 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCKYCRYQKCLAMGMKREAV 196
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G+ R ++ +S + PV I T Y E N P + +
Sbjct: 197 QEERQRGKD-RNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDP 255
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 256 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 300
>gi|380012603|ref|XP_003690369.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Apis florea]
Length = 440
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 108/203 (53%), Gaps = 16/203 (7%)
Query: 16 HSAPLSSASSSPGCDTSRPTPPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
HS LS++ S + P PP+ LC++CGD A+ +HYGV +CEGCKGFFKRT
Sbjct: 92 HSNLLSTSPSGQNKAVA-PYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 150
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
V+K Y C +K+C +DKR+RNRCQ+CR+QKCL +GM +E V+ + R R + +
Sbjct: 151 VRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEE-----RQRTKERDQ 205
Query: 131 SPQESPPS-----PPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
S ES S P ++ A R +E + + + + +A I
Sbjct: 206 SEVESTSSLHSDMPIERILEAEKRVECKMEQQGNYENAVSHICNATNKQLFQLVAWAKHI 265
Query: 186 PGFSDLCKEDQELLFQSASLELF 208
P F+ L EDQ LL ++ EL
Sbjct: 266 PHFTSLPLEDQVLLLRAGWNELL 288
>gi|24660692|ref|NP_729340.1| estrogen-related receptor, isoform A [Drosophila melanogaster]
gi|17225790|gb|AAL37553.1|AF359420_1 estrogen-related receptor [Drosophila melanogaster]
gi|7295148|gb|AAF50473.1| estrogen-related receptor, isoform A [Drosophila melanogaster]
gi|15291575|gb|AAK93056.1| GH28308p [Drosophila melanogaster]
gi|220943306|gb|ACL84196.1| ERR-PA [synthetic construct]
gi|220953294|gb|ACL89190.1| ERR-PA [synthetic construct]
Length = 484
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 132/268 (49%), Gaps = 33/268 (12%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A+ C ++KRRR CQ CRF
Sbjct: 113 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPANNECEINKRRRKACQACRF 172
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSP---------QESPPSP-PVSLITALYR- 149
QKCL +GM+KE VR D ++G R + P S Q + S V ++ L
Sbjct: 173 QKCLLMGMLKEGVRLDRVRGGRQKYRRNPVSNSYQTMQLLYQSNTTSLCDVKILEVLNSY 232
Query: 150 EPNPLEPPIAEPEKIQQFYSLLTTSV--DVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
EP+ L P+ + TTS+ D + I S + + +FQ+ +
Sbjct: 233 EPDALSVQTPPPQ-------VHTTSITNDEASSSSGSIKLESSVVTPNGTCIFQNNNNN- 284
Query: 208 FYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 267
+PN + +++ + + + +A +IPGF DL DQ L Q + E
Sbjct: 285 ---DPNEILSVLSD---------IYDKELVSVIGWAKQIPGFIDLPLNDQMKLLQVSWAE 332
Query: 268 LFVLRLAYRTRAEDTKLIFCNGVVLEKQ 295
+ L+L +R+ + KL F V +++
Sbjct: 333 ILTLQLTFRSLPFNGKLCFATDVWMDEH 360
>gi|344288073|ref|XP_003415775.1| PREDICTED: retinoic acid receptor beta isoform 2 [Loxodonta
africana]
Length = 455
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 131/297 (44%), Gaps = 53/297 (17%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 88 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 147
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM K +S++ R + +P S QE S
Sbjct: 148 CFEVGMSK-----ESVRNDRNKKKKEP-SKQECTES------------------------ 177
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS----LELFYREPNPLEPP 218
+ + L + IR + F LC+ + SA L+L +
Sbjct: 178 --YEMTAELDDLTETIRKAHQET--FPSLCQLGKYTTNSSADHRVRLDLGLWD------- 226
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R
Sbjct: 227 --------KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYT 278
Query: 279 AEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
E + F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 279 PEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 335
>gi|2661449|emb|CAA05769.1| retinoic acid receptor beta2 [Rattus norvegicus]
Length = 291
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 121/254 (47%), Gaps = 45/254 (17%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 81 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 140
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE VR D + ++ + PSK + + + + +T E
Sbjct: 141 CFEVGMSKESVRND--RNKKKKEPSKQECTESYEMTAELDDLT----------------E 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
KI++ + F LC+ + SA + L+ + +
Sbjct: 183 KIRKAHQ----------------ETFPSLCQLGKYTTNSSADHRV------RLDLGLWD- 219
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 220 ----KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQD 275
Query: 283 KLIFCNGVVLEKQQ 296
+ F +G+ L + Q
Sbjct: 276 TMTFSDGLTLNRTQ 289
>gi|417401446|gb|JAA47609.1| Putative retinoic acid receptor rxr-alpha [Desmodus rotundus]
Length = 467
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 117/222 (52%), Gaps = 27/222 (12%)
Query: 11 SPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQHYG 56
SP+L S+P++ SS+ G + P PS +CA+CGD ++ +HYG
Sbjct: 96 SPQL--SSPMNPVSSTEDIKPPLGINGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYG 153
Query: 57 VRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTD 116
V +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ +
Sbjct: 154 VYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEE 213
Query: 117 SLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEKIQQ 166
+G+ R S+ +S + PV I T Y E N P + + +
Sbjct: 214 RQRGKD-RNESEVESTSGASEDMPVEKILEAELAVEPKTETYVEANMGLNPNSPNDPVTN 272
Query: 167 FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + +A +IP FS+L +DQ +L ++ EL
Sbjct: 273 ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 314
>gi|158962474|dbj|BAF91724.1| retinoid X receptor [Ornithodoros moubata]
Length = 453
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 135/296 (45%), Gaps = 30/296 (10%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C D+ C +DKR+RNRCQ+CR+
Sbjct: 102 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRNCVIDKRQRNRCQYCRY 161
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL GM +E V+ + R R + ++ ES S + E P AE
Sbjct: 162 QKCLSCGMKREAVQEE-----RQRTKERGENEVESTSSGQAEMPIDRILEAELRVEPKAE 216
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
++ S + + ++P + D + PP
Sbjct: 217 DLEVNALPSRGAPAPQPVH----RLPFVPQVKPADLTM------------------PPEK 254
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+P + + + +A IP F++L ED+ +L ++ EL + ++R+
Sbjct: 255 DP--VTNICQAADRQLHQLVEWAKHIPHFTELPLEDRMVLLKAGWNELLIAAFSHRSMXV 312
Query: 281 DTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
++ G+V+++ + G + + E + + +D + CL A+ L
Sbjct: 313 KDGIVLATGLVVQRHSAHSAGVGAIFDRVLTELVAKMRELRMDRTELGCLRAIVLF 368
>gi|403261960|ref|XP_003923366.1| PREDICTED: retinoic acid receptor RXR-beta [Saimiri boliviensis
boliviensis]
Length = 505
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 135/298 (45%), Gaps = 56/298 (18%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LCA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C VDKR+RNRCQ+CR+
Sbjct: 175 RLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRY 234
Query: 101 QKCLQVGMVKEVVRTDSLKG--RRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPI 158
QKCL GM +E V+ + +G + G +P+E PV I LE +
Sbjct: 235 QKCLATGMKREAVQEERQRGKDKDGDGEGTGGAPEEM----PVDRI---------LEAEL 281
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPP 218
A +K Q + D + +++C Q+A +LF
Sbjct: 282 AVEQKSDQGVEGPGGTGGSGSSPNDPV---TNIC--------QAADKQLF---------- 320
Query: 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTR 278
+ +A +IP FS L +DQ +L ++ EL + ++R+
Sbjct: 321 -------------------TLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSI 361
Query: 279 AEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
++ G+ + + + G + + E + M +D + CL A+ L
Sbjct: 362 DVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILF 419
>gi|417515778|gb|JAA53699.1| retinoic acid receptor RXR-alpha [Sus scrofa]
Length = 467
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 27/222 (12%)
Query: 11 SPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQHYG 56
SP+L S+P++ SSS G + P PS +CA+CGD ++ +HYG
Sbjct: 96 SPQL--SSPMNPVSSSEDIKPPLGINGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYG 153
Query: 57 VRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTD 116
V +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ +
Sbjct: 154 VYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEE 213
Query: 117 SLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEKIQQ 166
+G+ R ++ +S + PV I T Y E N P + + +
Sbjct: 214 RQRGKD-RGENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANVGLNPSSPNDPVTN 272
Query: 167 FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + +A ++P FS+L +DQ +L ++ EL
Sbjct: 273 ICQAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELL 314
>gi|327276463|ref|XP_003222989.1| PREDICTED: retinoic acid receptor RXR-alpha-like, partial [Anolis
carolinensis]
Length = 451
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 119/229 (51%), Gaps = 27/229 (11%)
Query: 4 GRSSSSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDI 49
G + SP+L ++P++ SS+ G + P PS +CA+CGD
Sbjct: 73 GLGFGTNSPQL--NSPMNPVSSTEDIKPPLGINGVLKVPVHPSSAMASFTKHICAICGDR 130
Query: 50 AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMV 109
++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM
Sbjct: 131 SSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMK 190
Query: 110 KEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIA 159
+E V+ + +G + R ++ +S + PV I T Y E N P +
Sbjct: 191 REAVQEERQRG-KDRNENEVESTSNANEDMPVEKILEAELAVEPKTETYIEANMGLTPNS 249
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 250 PNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 298
>gi|302025528|gb|ADK90035.1| estrogen receptor beta 2 [Epinephelus coioides]
Length = 642
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 139/301 (46%), Gaps = 36/301 (11%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 175 HFCAVCHDYASGYHYGVWSCEGCKAFFKRSIQGHNDYICPATNQCTIDKNRRKSCQACRL 234
Query: 101 QKCLQVGMVKEVVRTD--SLKG---RRGRLPSKPKSPQESPPSPPVSLITALYREPNPLE 155
+KC +VGM+K VR + S +G RRG L + + + A + + LE
Sbjct: 235 RKCYEVGMMKCGVRRERCSYRGARHRRGGLQHRELTGKG----------LARAQRHHHLE 284
Query: 156 PPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
P+ + ++L+ + + I + P + L ++ Q+
Sbjct: 285 APLGPLPQASHAHNLVMSPEEFISRIIEAEPPETYLMEDMQK------------------ 326
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
P E + +L + ++ +A KIPGF +LC DQ L + L++ +L L +
Sbjct: 327 --PFTESTMMMSLTNLADKELVLMISWAKKIPGFVELCLADQIHLLKCCWLDILMLGLMW 384
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ KLIF L +++ Q G + + +L +++ + CL A+ L
Sbjct: 385 RSVDHPGKLIFSPDFKLSREEGQCVEGIVEIFDMLLAATSRFRELKLQREEYVCLKAMIL 444
Query: 335 I 335
+
Sbjct: 445 L 445
>gi|355686621|gb|AER98120.1| estrogen-related receptor alpha [Mustela putorius furo]
Length = 349
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 134/303 (44%), Gaps = 52/303 (17%)
Query: 39 PSQLCAVCGDIAACQ-----HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
P +LC VCGD+A HYGV +CE CK FFKRT+Q +Y C A C + KRRR
Sbjct: 81 PKRLCLVCGDVAGGDVPPGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRK 140
Query: 94 RCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK-SPQESPPS-PPVSLITALYREP 151
CQ CRF KCL+VGM+KE VR D ++G R + +P+ P P S P SL A
Sbjct: 141 ACQACRFTKCLRVGMLKEGVRLDRVRGGRQKYKRRPEVDPLPFPSSFPAGSLAVA----- 195
Query: 152 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYRE 211
P K +L++ H P E Y
Sbjct: 196 -------GGPRKTAPVNALVS-------HLLVVEP-------------------EKLYAM 222
Query: 212 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVL 271
P+P P P + L + V +A IPGFS L DQ + QS +E+ VL
Sbjct: 223 PDPAGPDGHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVL 281
Query: 272 RLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
+D +L F +VL+++ + + + A+L+ + L + ++ + L A
Sbjct: 282 -----VPLQD-ELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKA 335
Query: 332 LTL 334
L L
Sbjct: 336 LAL 338
>gi|154936862|dbj|BAF75376.1| retinoid X receptor [Marsupenaeus japonicus]
Length = 442
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 5/173 (2%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C ++ C +DKR+RNRCQ+CR+
Sbjct: 113 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERGCTIDKRQRNRCQYCRY 172
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESP----PSPPVSLITALYREPNPLEP 156
QKCL +GM +E V+ + + R R + +S P+S I +P +
Sbjct: 173 QKCLSMGMKREAVQVGAAEEERQRTKGDKEVDTDSALGGVNDMPISQIRDAELNSDPTDD 232
Query: 157 PI-AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ E + + + + +A IP F+DL +DQ +L ++ EL
Sbjct: 233 LLFEEGDAVTHICQAADRHLVQLVEWAKHIPHFTDLPVDDQVILLKAGWNELL 285
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSF 301
+A IP F+DL +DQ +L ++ EL + ++R+ ++ G+V+ + +
Sbjct: 258 WAKHIPHFTDLPVDDQVILLKAGWNELLIASFSHRSMGVKDGIVLATGLVVHRSSAHHAG 317
Query: 302 GDDWLNAIL-EFCQSLHLMEIDISAFACLCALTL 334
D + +L E + M++D + CL ++ L
Sbjct: 318 VGDIFDRVLSELVAKMKEMKMDKTELGCLRSIVL 351
>gi|71040958|gb|AAZ20370.1| RXRc nuclear hormone receptor [Gecarcinus lateralis]
Length = 363
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 103/175 (58%), Gaps = 12/175 (6%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C +++C +DKR+RNRCQ+CR+
Sbjct: 70 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRY 129
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPL-EPPIA 159
QKCL +GM +E V+ + + + + +S + P++ I +P+ E P+
Sbjct: 130 QKCLTMGMKREAVQEERQRTKGDKGDGDTESSCGAISDMPIASIREAELSVDPIDEQPL- 188
Query: 160 EPEKIQQFYSLLTTSVDVIRH------FADKIPGFSDLCKEDQELLFQSASLELF 208
++ Q S + + D RH +A IP F+DL EDQ +L ++ EL
Sbjct: 189 --DQGQDVVSNICQAAD--RHLVQLVEWAKHIPHFTDLPIEDQVVLLKAGWNELL 239
>gi|363740474|ref|XP_003642339.1| PREDICTED: retinoic acid receptor RXR-alpha [Gallus gallus]
Length = 467
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
+ SP+L ++P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 93 GTSSPQL--NSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGTMASFTKHICAICGDRSSGK 150
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 151 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 210
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G + R ++ +S + PV I T Y E N P + +
Sbjct: 211 QEERQRG-KDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYIEANMGLTPSSPNDP 269
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 314
>gi|449269065|gb|EMC79874.1| Retinoic acid receptor RXR-alpha, partial [Columba livia]
Length = 458
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
+ SP+L ++P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 84 GTSSPQL--NSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGTMASFTKHICAICGDRSSGK 141
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 142 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 201
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G+ R ++ +S + PV I T Y E N P + +
Sbjct: 202 QEERQRGKD-RNENEVESTSSANEDMPVEKILEAELAVEPKTETYIEANMGLTPSSPNDP 260
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 261 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 305
>gi|187940918|gb|ACD39740.1| ultraspiracle protein [Spodoptera exigua]
Length = 412
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 99/178 (55%), Gaps = 10/178 (5%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C ++ C +DKR+RNRCQ+CR+
Sbjct: 59 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRY 118
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNP------L 154
QKCL GM +E V+ + + RG + P S + + + +L +P+ +
Sbjct: 119 QKCLACGMKREAVQEERQRAARGTEDAHPSSSVQELSIERLLEMESLVADPSEEYQFLRV 178
Query: 155 EPPIAEPEKIQQFYSLL----TTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P P K + S L + + +A IP FS L EDQ LL +S+ EL
Sbjct: 179 GPDSNVPPKFRAPVSSLCQIGNKQIAALVVWARDIPHFSSLELEDQTLLIKSSWNELL 236
>gi|427795199|gb|JAA63051.1| Putative ecdysone receptor a2 daphnia magna ecdysone receptor a2,
partial [Rhipicephalus pulchellus]
Length = 511
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 147/327 (44%), Gaps = 40/327 (12%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
P P +LC VCGD A+ HY TCEGCKGFF+R++ K + Y C C +D R
Sbjct: 119 PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCDIDMYMRR 178
Query: 94 RCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGRLPSKPKSPQESPPS---PPVS 142
+CQ CR +KCL VGM E ++ +S K ++ R P S PS P S
Sbjct: 179 KCQECRLKKCLSVGMRPECVVPEYQCAIKRESKKHQKDR----PNSTTRESPSGLMAPSS 234
Query: 143 LITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL--- 199
+ + P ++P +++ + + PG L ++L+
Sbjct: 235 MGGGV--------SPSSQPLGGGGSSLGSSSNHEEDKKPLVLSPGIKPLTSSQEDLINKL 286
Query: 200 ------FQSASLELFYREPNPLEPPIAEPE-----KIQQFYSLLTTSVDVIRHFADKIPG 248
F+S S E ++ P P+ + E + Q + +V +I F+ ++PG
Sbjct: 287 VYYQQEFESPSEEDM-KKTTPF--PLGDSEEDNQRRFQHITEITILTVQLIVEFSKRVPG 343
Query: 249 FSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNA 308
F L +EDQ L ++ S E+ +LR A + + ++F N + + + D +A
Sbjct: 344 FDTLAREDQITLLKACSSEVMMLRGARKYDVKTDSIVFANNQPYTRDNYRSASVGDSADA 403
Query: 309 ILEFCQSLHLMEIDISAFACLCALTLI 335
+ FC+ + + +D + +A L A+ +
Sbjct: 404 LFRFCRKMCQLRVDNAEYALLTAIVIF 430
>gi|339241463|ref|XP_003376657.1| ecdysone receptor [Trichinella spiralis]
gi|316974614|gb|EFV58098.1| ecdysone receptor [Trichinella spiralis]
Length = 573
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 141/314 (44%), Gaps = 44/314 (14%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
SP +LC VCGD A+ HY TCEGCKGFF+R++ + + Y C C +D R +CQ
Sbjct: 86 SPEELCLVCGDKASGYHYNALTCEGCKGFFRRSITRKALYYCKYGGHCDIDMYMRRKCQA 145
Query: 98 CRFQKCLQVGMVKEVVRTDSL----KGRRGRLPSKPKSPQESPPSPPVSLITALYREPNP 153
CR +KCL VGM E+V + + +G+ + K ++ S P + + PNP
Sbjct: 146 CRLRKCLDVGMRPELVIPEEQCRMKRESKGKCKAGSKVNEDGTVSSPPQVTSTDSSSPNP 205
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK----EDQELLFQSASLELFY 209
PE+ + LL + F +P DL K D+ Q+A+
Sbjct: 206 TSANSFSPEQRE----LLNRVLLCQEQF--DVPSNDDLSKLTVLSDESGACQAANF---- 255
Query: 210 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ---SASL 266
Q L +V +I F +PGF+ L EDQ LL + + +
Sbjct: 256 ----------------QHLAELTILNVQLIYEFIKHLPGFATLLPEDQNLLIKVEHACTT 299
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVV--LEKQQCQRSFGDDWLNA---ILEFCQSLHLMEI 321
E+ +++ A R + ++ N V +Q R G W A I EF +S+ +++
Sbjct: 300 EVLMMKTARRYDIKSDTIVLGNNVTNWAYTRQTYRQAG--WGTATDPIFEFAKSMAKLKV 357
Query: 322 DISAFACLCALTLI 335
D + FA L A+++
Sbjct: 358 DNAEFALLTAISVF 371
>gi|432865286|ref|XP_004070508.1| PREDICTED: retinoic acid receptor gamma-A isoform 1 [Oryzias
latipes]
Length = 502
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 130/293 (44%), Gaps = 44/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 77 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQK 136
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM KE +++ R + K P S Y LE + +
Sbjct: 137 CFEVGMSKE-----AVRNDRNKKKKDVKEEMVLPES---------YELSGELEELVNKVS 182
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + S+ + L+ + +
Sbjct: 183 KAHQ-------------------ETFPSLCQLGKYTTNSSSDHRV------QLDLGLWD- 216
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L +SA L++ +LR+ R E
Sbjct: 217 ----KFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQD 272
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 273 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 325
>gi|348504636|ref|XP_003439867.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 2
[Oreochromis niloticus]
Length = 407
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 16/204 (7%)
Query: 12 PKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
P L++ ++ +SPG + +CA+CGD ++ +HYGV +CEGCKGFFKRTV
Sbjct: 60 PGLQNLGNINYQCTSPGGMSK--------HICAICGDRSSGKHYGVYSCEGCKGFFKRTV 111
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKS 131
+K Y C +K CP+DKR+RNRCQ+CR+QKCL +GM +E V+ + +G+ R ++ +S
Sbjct: 112 RKDLSYTCRDNKECPIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKE-RGENEVES 170
Query: 132 PQESPPSPPVSLI--TALYREP-----NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 184
PV I L EP + P + + + + + +A +
Sbjct: 171 TSSFNEDMPVDKILDAELAVEPKTETYSDGSPGNSTNDPVTNICQAADKQLFTLVEWAKR 230
Query: 185 IPGFSDLCKEDQELLFQSASLELF 208
IP FS+L +DQ +L ++ EL
Sbjct: 231 IPHFSELPLDDQVILLRAGWNELL 254
>gi|386118319|gb|AFI99107.1| ecdysone receptor B1 [Bactrocera dorsalis]
Length = 767
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 153/350 (43%), Gaps = 31/350 (8%)
Query: 5 RSSSSESPKLRHSAPLSSASSSPGCDTSR----PTPPSPSQLCAVCGDIAACQHYGVRTC 60
S SS L S+ L+ S++ CD + P P +LC VCGD A+ HY TC
Sbjct: 200 NSISSGRDDLSPSSSLNGYSANESCDVKKIKKGPAPRLQEELCLVCGDRASGYHYNALTC 259
Query: 61 EGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS--L 118
EGCKGFF+R+V K + Y C ++C +D R +CQ CR +KCL VGM E V ++
Sbjct: 260 EGCKGFFRRSVTKNAVYCCKFGRSCEMDMYMRRKCQECRMKKCLAVGMRPECVVPENQCA 319
Query: 119 KGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPL---EPP-----------IAEPEKI 164
RR + K K Q + SP + ++ E L EPP I +
Sbjct: 320 MKRREKKAQKEKEKQTTGNSPIICKSESIKNEILELMNCEPPSHPTCPLLPDDIVAKCRA 379
Query: 165 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEK 224
L + VI G+ ED L+ P+ E P
Sbjct: 380 SNIPPLTRNQLAVIYKLIWYQDGYEQPSDED---------LKRITSTPDENESP--NDVS 428
Query: 225 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKL 284
+ + +V +I FA +P F+ + +EDQ L ++ S E+ +LR+A R +
Sbjct: 429 FRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHNSDSI 488
Query: 285 IFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
F N + + + D + +L FC+ ++ M++D +A L A+ +
Sbjct: 489 FFANNRSYTRDAYKMAGVADNIEDLLHFCRQMYSMKVDNVEYALLTAIVI 538
>gi|149410285|ref|XP_001506054.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ornithorhynchus
anatinus]
Length = 433
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 104 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 163
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYRE 150
QKCL +GM +E V+ + +G+ R ++ +S + PV I T Y E
Sbjct: 164 QKCLAMGMKREAVQEERQRGKD-RNENEVESTSSANEDMPVEKILEAELAVEPKTETYIE 222
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
N P + + + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 223 ANMGLNPNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 280
>gi|18859343|ref|NP_571313.1| retinoic acid receptor RXR-beta-B [Danio rerio]
gi|52783418|sp|Q90417.1|RXRBB_DANRE RecName: Full=Retinoic acid receptor RXR-beta-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-B;
AltName: Full=Retinoic acid receptor RXR-delta; AltName:
Full=Retinoid X receptor beta-B; AltName: Full=Retinoid
X receptor delta
gi|1046297|gb|AAC59721.1| retinoid X receptor delta [Danio rerio]
gi|1583306|prf||2120366A retinoid X receptor:ISOTYPE=delta
Length = 422
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
S ++CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C VDKR+RNRCQ+
Sbjct: 85 SQKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRCQY 144
Query: 98 CRFQKCLQVGMVKEVVRTDSLKG--RRGRLPSKPKSPQESPPSPPVSLITALYREPNPLE 155
CR+QKCL +GM +E V+ + K R G + +E P + TA+ +
Sbjct: 145 CRYQKCLAMGMKREAVQEERQKNKERDGDYECSSSANEEMPVEKILEAETAVEHRTDLHS 204
Query: 156 PPIAEPEK-IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P + + + +A ++P FSD+ +DQ +L ++ EL
Sbjct: 205 DATGSPNDPVTNICQAADKQLFTLVEWAKRVPHFSDVPLDDQVILLRAGWNELL 258
>gi|149039210|gb|EDL93430.1| retinoid X receptor alpha, isoform CRA_b [Rattus norvegicus]
Length = 439
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
+ SP+L ++P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 65 GTGSPQL--NSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMSSFTKHICAICGDRSSGK 122
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 123 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 182
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G+ R ++ +S + PV I T Y E N P + +
Sbjct: 183 QEERQRGKD-RNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDP 241
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 242 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 286
>gi|354501950|ref|XP_003513051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cricetulus
griseus]
gi|344245296|gb|EGW01400.1| Retinoic acid receptor RXR-alpha [Cricetulus griseus]
Length = 439
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
+ SP+L ++P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 65 GTGSPQL--NSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 122
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 123 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 182
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G+ R ++ +S + PV I T Y E N P + +
Sbjct: 183 QEERQRGKD-RNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMGLNPSSPNDP 241
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 242 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 286
>gi|148676425|gb|EDL08372.1| retinoid X receptor alpha [Mus musculus]
Length = 457
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 128 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 187
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYRE 150
QKCL +GM +E V+ + +G+ R ++ +S + PV I T Y E
Sbjct: 188 QKCLAMGMKREAVQEERQRGKD-RNENEVESTSSANEDMPVEKILEAELAVEPKTETYVE 246
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
N P + + + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 247 ANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 304
>gi|427789575|gb|JAA60239.1| Putative ecdysone receptor a2 daphnia magna ecdysone receptor a2
[Rhipicephalus pulchellus]
Length = 444
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 147/327 (44%), Gaps = 40/327 (12%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
P P +LC VCGD A+ HY TCEGCKGFF+R++ K + Y C C +D R
Sbjct: 52 PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCDIDMYMRR 111
Query: 94 RCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGRLPSKPKSPQESPPS---PPVS 142
+CQ CR +KCL VGM E ++ +S K ++ R P S PS P S
Sbjct: 112 KCQECRLKKCLSVGMRPECVVPEYQCAIKRESKKHQKDR----PNSTTRESPSGLMAPSS 167
Query: 143 LITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL--- 199
+ + P ++P +++ + + PG L ++L+
Sbjct: 168 MGGGV--------SPSSQPLGGGGSSLGSSSNHEEDKKPLVLSPGIKPLTSSQEDLINKL 219
Query: 200 ------FQSASLELFYREPNPLEPPIAEPE-----KIQQFYSLLTTSVDVIRHFADKIPG 248
F+S S E ++ P P+ + E + Q + +V +I F+ ++PG
Sbjct: 220 VYYQQEFESPSEEDM-KKTTPF--PLGDSEEDNQRRFQHITEITILTVQLIVEFSKRVPG 276
Query: 249 FSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNA 308
F L +EDQ L ++ S E+ +LR A + + ++F N + + + D +A
Sbjct: 277 FDTLAREDQITLLKACSSEVMMLRGARKYDVKTDSIVFANNQPYTRDNYRSASVGDSADA 336
Query: 309 ILEFCQSLHLMEIDISAFACLCALTLI 335
+ FC+ + + +D + +A L A+ +
Sbjct: 337 LFRFCRKMCQLRVDNAEYALLTAIVIF 363
>gi|464702|sp|Q05343.1|RXRA_RAT RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|206819|gb|AAA42093.1| retinoid X receptor alpha [Rattus norvegicus]
Length = 467
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 138 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 197
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYRE 150
QKCL +GM +E V+ + +G+ R ++ +S + PV I T Y E
Sbjct: 198 QKCLAMGMKREAVQEERQRGKD-RNENEVESTSSANEDMPVEKILEAELAVEPKTETYVE 256
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
N P + + + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 257 ANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 314
>gi|395506404|ref|XP_003757522.1| PREDICTED: retinoic acid receptor RXR-alpha [Sarcophilus harrisii]
Length = 468
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 139 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 198
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYRE 150
QKCL +GM +E V+ + +G + R ++ +S + PV I T Y E
Sbjct: 199 QKCLAMGMKREAVQEERQRG-KDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYIE 257
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
N P + + + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 258 ANMGLNPNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 315
>gi|148747360|ref|NP_036937.2| retinoic acid receptor RXR-alpha [Rattus norvegicus]
gi|110781215|emb|CAL25727.1| retinoid X receptor alpha [Rattus norvegicus]
gi|110781217|emb|CAL25728.1| retinoid X receptor alpha [Rattus norvegicus]
gi|112982471|emb|CAL36079.1| retinoid X receptor alpha [Rattus norvegicus]
gi|149039209|gb|EDL93429.1| retinoid X receptor alpha, isoform CRA_a [Rattus norvegicus]
Length = 467
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 138 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 197
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYRE 150
QKCL +GM +E V+ + +G+ R ++ +S + PV I T Y E
Sbjct: 198 QKCLAMGMKREAVQEERQRGKD-RNENEVESTSSANEDMPVEKILEAELAVEPKTETYVE 256
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
N P + + + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 257 ANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 314
>gi|6007621|gb|AAF00981.1|AF136372_1 RXR [Locusta migratoria]
Length = 389
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 16/168 (9%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C DK C +DKR+RNRCQ+CR+
Sbjct: 86 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRCQYCRY 145
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL +GM +E V+ + R R + ++ ES S + P+E I E
Sbjct: 146 QKCLAMGMKREAVQEE-----RQRTKERDQNEVESTSSLHTDM---------PVE-RILE 190
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
EK + + +++ +A IP F+ L EDQ LL ++ EL
Sbjct: 191 AEKRVECKAENQVEYELVE-WAKHIPHFTSLPLEDQVLLLRAGWNELL 237
>gi|327176809|gb|AEA29831.1| ecdysteroid receptor splice variant [Homarus americanus]
Length = 541
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 150/314 (47%), Gaps = 16/314 (5%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
P P +LC VCGD A+ HY TCEGCKGFF+R++ K + Y C C +D R
Sbjct: 147 PIPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCEMDMYMRR 206
Query: 94 RCQFCRFQKCLQVGMVKE-VVRTDSLKGRRGRLPSKPKSPQESPP-SPPVSLITALYREP 151
+CQ CR +KCL VGM E VV + +R + ++ K ++ P P++ A+
Sbjct: 207 KCQECRLKKCLSVGMRPECVVPESQCQVKREQKKARDKDKKDYPSIGSPIAEEKAII--I 264
Query: 152 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP--GFSDLCKEDQELL---------F 200
NP +P + QF +L+ +S ++ +P L +E +EL+ F
Sbjct: 265 NPCKPKGSPTASAMQFKTLVGSS-NITLSPMPTMPRTNIKPLTREQEELIHTLVYYQEEF 323
Query: 201 QSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL 260
+ S E + + + + + +V +I F+ ++PGF L +EDQ L
Sbjct: 324 EQPSEEDLKKIKFTFDGEDTSDMRFRHITEMTILTVQLIVEFSKQLPGFGTLEREDQITL 383
Query: 261 FQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLME 320
++ S E+ +LR A R ++ ++F N + + + + + FC++L M+
Sbjct: 384 LKACSSEVMMLRAARRYDSKTDSIVFGNNFPYTQHSYELAGLGESAGTLFRFCRNLCKMK 443
Query: 321 IDISAFACLCALTL 334
+D + +A L A+ +
Sbjct: 444 VDNAEYALLAAIAI 457
>gi|6755384|ref|NP_035435.1| retinoic acid receptor RXR-alpha [Mus musculus]
gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|54022|emb|CAA46962.1| retinoid X receptor-alpha [Mus musculus]
gi|200878|gb|AAA40080.1| retinoid X receptor alpha [Mus musculus]
gi|187953011|gb|AAI38803.1| Retinoid X receptor alpha [Mus musculus]
gi|187954071|gb|AAI38801.1| Retinoid X receptor alpha [Mus musculus]
Length = 467
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 138 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 197
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYRE 150
QKCL +GM +E V+ + +G+ R ++ +S + PV I T Y E
Sbjct: 198 QKCLAMGMKREAVQEERQRGKD-RNENEVESTSSANEDMPVEKILEAELAVEPKTETYVE 256
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
N P + + + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 257 ANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 314
>gi|397770461|gb|AFO64336.1| ecdysone receptor [Bactrocera dorsalis]
Length = 566
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 149/338 (44%), Gaps = 31/338 (9%)
Query: 17 SAPLSSASSSPGCDTSR----PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQ 72
S+ L+ S++ CD + P P +LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 11 SSSLNGYSANESCDVKKIKKGPAPRLQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVT 70
Query: 73 KGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS--LKGRRGRLPSKPK 130
K + Y C ++C +D R +CQ CR +KCL VGM E V ++ RR + K K
Sbjct: 71 KNAVYCCKFGRSCEMDMYMRRKCQECRMKKCLAVGMRPECVVPENQCAMKRREKKAQKEK 130
Query: 131 SPQESPPSPPVSLITALYREPNPL---EPP-----------IAEPEKIQQFYSLLTTSVD 176
Q + SP + ++ E L EPP I + L +
Sbjct: 131 EKQTTGNSPIICKSESIKNEILELMNCEPPSHPTCPLLPDDIVAKCRASNIPPLTRNQLA 190
Query: 177 VIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSV 236
VI G+ ED L+ P+ E P + + +V
Sbjct: 191 VIYKLIWYQDGYEQPSDED---------LKRITSTPDENESP--NDVSFRHITEITILTV 239
Query: 237 DVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ 296
+I FA +P F+ + +EDQ L ++ S E+ +LR+A R + F N +
Sbjct: 240 QLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHNSDSIFFANNRSYTRDA 299
Query: 297 CQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + D + +L FC+ ++ M++D +A L A+ +
Sbjct: 300 YKMAGVADNIEDLLHFCRQMYSMKVDNVEYALLTAIVI 337
>gi|74194825|dbj|BAE26004.1| unnamed protein product [Mus musculus]
Length = 467
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 138 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 197
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYRE 150
QKCL +GM +E V+ + +G+ R ++ +S + PV I T Y E
Sbjct: 198 QKCLAMGMKREAVQEERQRGKD-RNENEVESTSSANEDMPVEKILEAELAVEPKTETYVE 256
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
N P + + + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 257 ANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 314
>gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculus]
gi|1685273|gb|AAB36778.1| RXR alpha 3 [Mus musculus]
Length = 439
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 110 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 169
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYRE 150
QKCL +GM +E V+ + +G+ R ++ +S + PV I T Y E
Sbjct: 170 QKCLAMGMKREAVQEERQRGKD-RNENEVESTSSANEDMPVEKILEAELAVEPKTETYVE 228
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
N P + + + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 229 ANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 286
>gi|1718061|sp|P54779.1|USP_MANSE RecName: Full=Protein ultraspiracle homolog; AltName: Full=Nuclear
receptor subfamily 2 group B member 4
gi|1304738|gb|AAB64234.1| MsUSP-1 protein [Manduca sexta]
Length = 461
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 12/179 (6%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C D+ C +DKR+RNRCQ+CR+
Sbjct: 111 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRNCIIDKRQRNRCQYCRY 170
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLE----- 155
QKCL GM +E V+ + + RG + P S + + I +L +P P E
Sbjct: 171 QKCLACGMKREAVQEERQRAARGTEDAHPSSSVQELSIERLLEIESLVADP-PEEFQFLR 229
Query: 156 --PPIAEPEKIQQFYSLL----TTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P P K + S L + + +A IP F L EDQ LL +++ EL
Sbjct: 230 VGPESGVPAKYRAPVSSLCQIGNKQIAALVVWARDIPHFGQLELEDQILLIKNSWNELL 288
>gi|2738904|gb|AAB94566.1| AamEcRA1 [Amblyomma americanum]
Length = 560
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 145/329 (44%), Gaps = 46/329 (13%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
P P +LC VCGD A+ HY TCEGCKGFF+R++ K + Y C C +D R
Sbjct: 170 PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCDIDMYMRR 229
Query: 94 RCQFCRFQKCLQVGMVKE--------VVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLIT 145
+CQ CR +KCL VGM E ++ +S K ++ R P S PS ++ +
Sbjct: 230 KCQECRLKKCLSVGMRPECVVPEYQCAIKRESKKHQKDR----PNSTTRESPSALMAPSS 285
Query: 146 ALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK-----IPGFSDLCKEDQELL- 199
P Q +S+ H DK PG L ++L+
Sbjct: 286 VGGVSP------------TSQPMGGGGSSLGSSNHEEDKKPVVLSPGVKPLSSSQEDLIN 333
Query: 200 --------FQSASLELFYREPNPLEPPIAEPE-----KIQQFYSLLTTSVDVIRHFADKI 246
F+S S E ++ P P+ + E + Q + +V +I F+ ++
Sbjct: 334 KLVYYQQEFESPSEEDM-KKTTPF--PLGDSEEDNQRRFQHITEITILTVQLIVEFSKRV 390
Query: 247 PGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWL 306
PGF L +EDQ L ++ S E+ +LR A + + ++F N + + + D
Sbjct: 391 PGFDTLAREDQITLLKACSSEVMMLRGARKYDVKTDSIVFANNQPYTRDNYRSASVGDSA 450
Query: 307 NAILEFCQSLHLMEIDISAFACLCALTLI 335
+A+ FC+ + + +D + +A L A+ +
Sbjct: 451 DALFRFCRKMCQLRVDNAEYALLTAIVIF 479
>gi|323461807|dbj|BAJ76722.1| retinoid X receptor isoform 1 [Reishia clavigera]
Length = 442
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 109/209 (52%), Gaps = 17/209 (8%)
Query: 6 SSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKG 65
+SS SP + +P + +SSPG P +CA+CGD A+ +HYGV +CEGCKG
Sbjct: 91 TSSLGSPTMMCLSP--TGTSSPGM----PHSGLSKHICAICGDRASGKHYGVYSCEGCKG 144
Query: 66 FFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRL 125
FFKRTV+K Y C DK C +DKR+RNRCQ+CR+ KCL GM +E V+ + R R+
Sbjct: 145 FFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLAQGMKREAVQEE-----RQRV 199
Query: 126 PSKPKSPQESPPSPPVSL-ITALYREPNPLEPPI-----AEPEKIQQFYSLLTTSVDVIR 179
K ES + + + +EP I A+ E + + +
Sbjct: 200 KEKGDGEVESTSGANSDMPVEQILEAEIAVEPKIDTYIDAQKEPVTNICQAADKQLFTLV 259
Query: 180 HFADKIPGFSDLCKEDQELLFQSASLELF 208
+A +IP F +L EDQ +L ++ EL
Sbjct: 260 DWAKRIPHFVELPLEDQVILLRAGWNELL 288
>gi|444729063|gb|ELW69492.1| Retinoic acid receptor RXR-beta [Tupaia chinensis]
Length = 408
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 147/346 (42%), Gaps = 66/346 (19%)
Query: 4 GRSSSSESPKLRHSAPLSSASSSPGCDTSRPT--------------PPSPSQLCAVCGDI 49
G S SP++ + L S P D P P + +LCA+CGD
Sbjct: 27 GFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGKRLCAICGDR 86
Query: 50 AACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMV 109
++ +HYGV +CEGCKGFFKRT++K Y C +K C VDKR+RNRCQ+CR+QKCL GM
Sbjct: 87 SSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMK 146
Query: 110 KEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYS 169
+E V+ + +G+ + +P PV I LE +A +K Q
Sbjct: 147 REAVQEERQRGKDK--DGDGEGAGGAPEEMPVDRI---------LEAELAVEQKSDQGVE 195
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFY 229
+ D + +++C Q+A +LF
Sbjct: 196 SPGGTGGGGSSPNDPV---TNIC--------QAADKQLF--------------------- 223
Query: 230 SLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNG 289
+ +A +IP FS L +DQ +L ++ EL + ++R+ ++ G
Sbjct: 224 --------TLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATG 275
Query: 290 VVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + + + G + + E + M +D + CL A+ L
Sbjct: 276 LHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIIL 321
>gi|302872921|gb|ADL71443.1| estrogen receptor-like receptor [Strongylocentrotus nudus]
Length = 416
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 117/235 (49%), Gaps = 38/235 (16%)
Query: 16 HSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGS 75
+A L A+ + G + P +LCAVC D+A+ HYG+ +CE CK FFKRT+Q
Sbjct: 60 QNALLDEAAKADGDQGANP------RLCAVCSDLASGYHYGIASCEACKAFFKRTIQGNL 113
Query: 76 KYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQES 135
Y C + C V+K+RR C CRFQKC+ +GM+ + VR D ++G R + +P+ +
Sbjct: 114 NYQCHSTSECEVNKKRRKACPACRFQKCINMGMMIDGVRPDRVRGGRQKYRRRPEETDFA 173
Query: 136 PPS---------------------PPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTS 174
P S PPVS + P++P + + + Q ++T
Sbjct: 174 PSSSARRAKHRRAAELTKHLLKIEPPVSTL-------GPIDPSLKDKDPAFQAMKIITDL 226
Query: 175 VD----VIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKI 225
D + +A ++PGF++L D+ +L Q +E+ + P++EP++I
Sbjct: 227 GDRALANVVQWAKQVPGFTELSLGDRRILLQDGWMEILLWQVIFRSIPLSEPDRI 281
>gi|296191131|ref|XP_002743523.1| PREDICTED: retinoic acid receptor RXR-alpha [Callithrix jacchus]
Length = 603
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
S+ +P+L S+P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 229 STGNPQL--SSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 286
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 287 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 346
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G+ R ++ +S + PV I T Y E N P + +
Sbjct: 347 QEERQRGKD-RNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANVGLNPSSPNDP 405
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 406 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 450
>gi|190336859|gb|AAI62302.1| Retinoid x receptor, beta b [Danio rerio]
gi|190337908|gb|AAI62301.1| Retinoid x receptor, beta b [Danio rerio]
Length = 422
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
S ++CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C VDKR+RNRCQ+
Sbjct: 85 SQKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRCQY 144
Query: 98 CRFQKCLQVGMVKEVVRTDSLKG--RRGRLPSKPKSPQESPPSPPVSLITALYREPNPLE 155
CR+QKCL +GM +E V+ + K R G + +E P + TA+ +
Sbjct: 145 CRYQKCLAMGMKREAVQEERQKNKERDGDYECSSSANEEMPVEKILEAETAVEHRTDLHS 204
Query: 156 PPIAEPEK-IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P + + + +A ++P FS+L +DQ +L ++ EL
Sbjct: 205 DATGSPNDPVTNICQAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELL 258
>gi|51873224|gb|AAU12572.1| retinoid X receptor [Reishia clavigera]
Length = 431
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 109/209 (52%), Gaps = 17/209 (8%)
Query: 6 SSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKG 65
+SS SP + +P + +SSPG P +CA+CGD A+ +HYGV +CEGCKG
Sbjct: 80 TSSLGSPTMMCLSP--TGTSSPGM----PHSGLSKHICAICGDRASGKHYGVYSCEGCKG 133
Query: 66 FFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRL 125
FFKRTV+K Y C DK C +DKR+RNRCQ+CR+ KCL GM +E V+ + R R+
Sbjct: 134 FFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYMKCLAQGMKREAVQEE-----RQRV 188
Query: 126 PSKPKSPQESPPSPPVSL-ITALYREPNPLEPPI-----AEPEKIQQFYSLLTTSVDVIR 179
K ES + + + +EP I A+ E + + +
Sbjct: 189 KEKGDGEVESTSGANSDMPVEQILEAEIAVEPKIDTYIDAQKEPVTNICQAADKQLFTLV 248
Query: 180 HFADKIPGFSDLCKEDQELLFQSASLELF 208
+A +IP F +L EDQ +L ++ EL
Sbjct: 249 DWAKRIPHFVELPLEDQVILLRAGWNELL 277
>gi|348504634|ref|XP_003439866.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 1
[Oreochromis niloticus]
Length = 453
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 100/175 (57%), Gaps = 8/175 (4%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K CP+DKR+RNRCQ+CR+
Sbjct: 127 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECPIDKRQRNRCQYCRY 186
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI--TALYREP-----NP 153
QKCL +GM +E V+ + +G+ R ++ +S PV I L EP +
Sbjct: 187 QKCLAMGMKREAVQEERQRGKE-RGENEVESTSSFNEDMPVDKILDAELAVEPKTETYSD 245
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P + + + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 246 GSPGNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 300
>gi|410912391|ref|XP_003969673.1| PREDICTED: oxysterols receptor LXR-alpha-like [Takifugu rubripes]
Length = 452
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 156/326 (47%), Gaps = 42/326 (12%)
Query: 21 SSASSSPGCD---TSRPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQK 73
++A +S G D R P+P +++C+VCGD A+ HY V +CEGCKGFF+R+V K
Sbjct: 76 AAAETSAGSDGQPVKRKKGPAPKMLGNEVCSVCGDKASGFHYNVLSCEGCKGFFRRSVIK 135
Query: 74 GSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS---LKGRRGRLPSKPK 130
++Y C + C +D R +CQ CR +KC + GM++ V ++ LK + + +
Sbjct: 136 SAQYSCKNNGHCEMDMYMRRKCQQCRLRKCREAGMLEHCVLSEEQIRLKKMKKQEEETAR 195
Query: 131 SPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 190
+ E P+PP + T ++ +E +A ++ + R F D+ P +
Sbjct: 196 TSTEVAPTPPQEVATLDPQQQEMIEKLVAMQKQCNK------------RSFLDR-PKVTP 242
Query: 191 LCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 250
+ S +L RE ++ F L SV I FA ++PGF
Sbjct: 243 WPQ----------SQDLQNRE--------VRQQRFAHFTELAIMSVQEIVDFAKQLPGFL 284
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAI 309
+L +EDQ L +++++E+ +L + R + F K+ ++ +++N I
Sbjct: 285 ELTREDQIALLKTSTIEIMLLETSRRYNPSIDSITFLKDFSYNKEDFAKAGLQFEFINPI 344
Query: 310 LEFCQSLHLMEIDISAFACLCALTLI 335
EF + ++ + +D + +A L A+ +
Sbjct: 345 FEFSKGMNDLHLDEAEYALLIAINIF 370
>gi|40217924|gb|AAR82891.1| estrogen receptor alpha [Haplochromis burtoni]
Length = 582
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 146/308 (47%), Gaps = 45/308 (14%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ CR
Sbjct: 136 TRFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 195
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIA 159
+KC +VGM+K +R D RGR+ + K P L P+ PP
Sbjct: 196 LRKCYEVGMMKGGMRKD-----RGRVLRREKRRAYDRDKPAKDL-------PHTKAPP-- 241
Query: 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI 219
+ + S +TS R + IP DQ LL + EP P +
Sbjct: 242 -HDGRKHATSSSSTSGGGGRSSLNSIP-------PDQVLLLLQGA------EP----PTL 283
Query: 220 AEPEKIQQFYS------LLTTSVDV----IRHFADKIPGFSDLCKEDQELLFQSASLELF 269
+K+ Q Y+ LLT+ D + +A K+PGF L DQ LL +S+ LE+
Sbjct: 284 CSRQKMNQPYTEVTMMTLLTSMADKELVHMIAWAKKLPGFLQLSLHDQVLLLESSWLEVL 343
Query: 270 VLRLAYRTRAEDTKLIFCNGVVLEKQQ--CQRSFGDDWLNAILEFCQSLHLMEIDISAFA 327
++ L +R+ KLIF ++L++ + C + + +L ++++ F
Sbjct: 344 MIGLIWRSIHCPGKLIFAQDLILDRTEGTCVEGMA-EIFDMLLATASRFRMLKLKPEEFV 402
Query: 328 CLCALTLI 335
CL A+ L+
Sbjct: 403 CLKAIILL 410
>gi|432094623|gb|ELK26129.1| Retinoic acid receptor RXR-beta [Myotis davidii]
Length = 574
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 133/295 (45%), Gaps = 52/295 (17%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LCA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C VDKR+RNRCQ+CR+
Sbjct: 244 RLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRY 303
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL GM +E V+ + +G+ + +P PV I LE +A
Sbjct: 304 QKCLATGMKREAVQEERQRGK--DKDGDGEGAGGAPEEMPVDRI---------LEAELAV 352
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
+K Q + D + +++C Q+A +LF
Sbjct: 353 EQKSDQGVEGPGGTGGSGSSPNDPV---TNIC--------QAADKQLF------------ 389
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ +A +IP FS L +DQ +L ++ EL + ++R+
Sbjct: 390 -----------------TLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDV 432
Query: 281 DTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ G+ + + + G + + E + M +D + CL A+ L
Sbjct: 433 RDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIIL 487
>gi|260828819|ref|XP_002609360.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
gi|229294716|gb|EEN65370.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
Length = 427
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 106/186 (56%), Gaps = 19/186 (10%)
Query: 37 PSPSQ--------LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
P PSQ +C +CGD A+ +HYGV +CEGCKGFFKRTV+K Y C ++ C +D
Sbjct: 98 PRPSQTPMGLSKHICQICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDNRDCVID 157
Query: 89 KRRRNRCQFCRFQKCLQVGMVKEVV---RTDSLKGRRGRLPSKPKSPQESPPSPPV--SL 143
KR+RNRCQ+CR+QKCL +GM +E V R S +G+ G + S +P E P + +
Sbjct: 158 KRQRNRCQYCRYQKCLAMGMKREAVQEERQRSKEGKDGEVVST-TNPNEDMPVEKIQEAE 216
Query: 144 ITALYREPNPLEPPIAEPEKI-QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 202
+ ++ N +E P I Q L T V+ +A +IP FSDL +DQ +L ++
Sbjct: 217 MAVEPKDGNLVEQPNDPVTNICQAADKQLVTLVE----WAKRIPHFSDLPIDDQVILLRA 272
Query: 203 ASLELF 208
EL
Sbjct: 273 GWNELL 278
>gi|146147384|gb|ABQ01987.1| retinoid X receptor beta [Salmo salar]
gi|148362152|gb|ABQ59675.1| RXR [Salmo salar]
Length = 430
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 111/217 (51%), Gaps = 19/217 (8%)
Query: 11 SPKLRHSAPLSSASSSPGCDTSRP-------TPPSP----SQLCAVCGDIAACQHYGVRT 59
SP++ + +S + D +P +P P +LCA+CGD ++ +HYGV +
Sbjct: 47 SPQINSTVSMSGLHAVSSSDDVKPPFGLGGHSPGGPMLSQKRLCAICGDRSSGKHYGVHS 106
Query: 60 CEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSL- 118
CEGCKGFFKRTV+K Y C +K C VDKR+RNRCQ+CR+QKCL GM +E V+ +
Sbjct: 107 CEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRCQYCRYQKCLACGMKREAVQEERQR 166
Query: 119 -KGRRGRLPSKPKSPQESP------PSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLL 171
K R + S +E P V T L+ + + + + + +
Sbjct: 167 NKERESEVESTSAVNEEMPVEKILEAEMAVEQKTELHADGSSGDSSVNPNDPVTNICQAA 226
Query: 172 TTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + +A ++P FS+L +DQ +L ++ EL
Sbjct: 227 DKQLFTLVEWAKRVPHFSELALDDQVILLRAGWNELL 263
>gi|90085555|dbj|BAE91518.1| unnamed protein product [Macaca fascicularis]
Length = 612
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 140/295 (47%), Gaps = 24/295 (8%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG--SKYVCLADKACPVDKRRRNRCQFCRF 100
C VCGD A HY TCEGCKGFF+RT+QK Y C D C +DK RN+CQ CRF
Sbjct: 53 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRF 112
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++V DS + + +L + + + +I +L + P P
Sbjct: 113 KKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKE-----EMIRSLQQRPEPT------ 161
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
PE+ + L+ + + R + + K + + QS + + + LE
Sbjct: 162 PEE----WDLIHIATEAHRSTNAQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLE---- 213
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+F ++T ++ + FA K+P FS+L EDQ +L + +E+ LR A R E
Sbjct: 214 ---AFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPE 270
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + ++++Q + +AI E +SL +D + A L A+ L+
Sbjct: 271 SDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLM 325
>gi|348505482|ref|XP_003440290.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Oreochromis
niloticus]
Length = 781
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 117/228 (51%), Gaps = 35/228 (15%)
Query: 9 SESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQH 54
S SP+L ++P++S SS+ G + P PS +CA+CGD ++ +H
Sbjct: 408 SVSPQL--NSPMNSVSSTEDIKPPLGLNGVMKVPAQPSSTALSLTKHICAICGDRSSGKH 465
Query: 55 YGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVR 114
YGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+
Sbjct: 466 YGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREAVQ 525
Query: 115 TDSLKGRRGRLPSKPKSPQESPP----SPPVSLI----------TALYREPNPLEPPIAE 160
+ R R K ++ ES PV I T Y E N P +
Sbjct: 526 EE-----RQRAKDKNENEVESTSCANEDMPVEKILEAEEAVEPKTETYIETNLGVPSNSP 580
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 581 NDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 628
>gi|55832824|gb|AAV66919.1| thyroid hormone receptor alpha [Pseudopleuronectes americanus]
Length = 416
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 147/319 (46%), Gaps = 35/319 (10%)
Query: 23 ASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSK--YVCL 80
+SS PG S P C VCGD A HY TCEGCKGFF+RT+QK Y C
Sbjct: 42 SSSVPGYIPSYLEKDEP---CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPAYSCK 98
Query: 81 ADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP 140
+ C +DK RN+CQ CRF+KC+ VGM ++V DS + + RL + + ++
Sbjct: 99 YEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRRLIEENREKRKRD---- 154
Query: 141 VSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLF 200
++ L P EP AE + L+ + D RH + + Q+ F
Sbjct: 155 -EMVRTLQVRP---EPDTAE-------WELIKLATDAHRHTNAQGSSWK------QKRKF 197
Query: 201 QSASLELFYREPNPLEPPI----AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 256
S + P+ P + E +F ++T ++ + FA K+P FS+L ED
Sbjct: 198 LSDDI-----GQGPMVPTSDGDKVDLEAFGEFTKIMTPAITRVVDFAKKLPMFSELPCED 252
Query: 257 QELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSL 316
Q +L + +E+ LR A R E L + ++++Q + +AI + +SL
Sbjct: 253 QIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVKREQLKNGGLGVVSDAIFDLGKSL 312
Query: 317 HLMEIDISAFACLCALTLI 335
+D + A + A+ L+
Sbjct: 313 AQFNLDDTEVALMQAVLLM 331
>gi|126297986|ref|XP_001372307.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Monodelphis
domestica]
Length = 489
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 160 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 219
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYRE 150
QKCL +GM +E V+ + +G+ R ++ +S + PV I T Y E
Sbjct: 220 QKCLAMGMKREAVQEERQRGKD-RNENEVESTSSANEDMPVEKILEAELAVEPKTETYIE 278
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
N P + + + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 279 ANMGLNPNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 336
>gi|195135300|ref|XP_002012072.1| GI16634 [Drosophila mojavensis]
gi|193918336|gb|EDW17203.1| GI16634 [Drosophila mojavensis]
Length = 491
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 134/290 (46%), Gaps = 31/290 (10%)
Query: 24 SSSPGCDTSRPTPPSPS------QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKY 77
S S G S S S +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y
Sbjct: 89 SGSTGAQNSSANAGSGSVRDEMRRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGNIEY 148
Query: 78 VCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSP----- 132
C A+ C ++KRRR CQ CRFQKCL +GM+KE VR D ++G R + P S
Sbjct: 149 TCPANNECEINKRRRKACQACRFQKCLLMGMLKEGVRLDRVRGGRQKYRRNPVSNSYQTM 208
Query: 133 ----QESPPS-PPVSLITALYR-EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP 186
Q S S V ++ L EP+ L + ++ Q + A
Sbjct: 209 QLLYQSSTTSLGDVKILDVLNSYEPDALSVQAQQQQQQSQQQQSQQPHTTSLNDEASSSS 268
Query: 187 GFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTS--VDVIRHFAD 244
G L E+ +++ ++ N +P +I S L V VI +A
Sbjct: 269 GSVKL-----EVSNGTSNGTCIFQNNNN------DPNEILGVLSDLYDKELVSVI-GWAK 316
Query: 245 KIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEK 294
+IPGF DL DQ L Q + E+ L+ +R+ + KL F V +++
Sbjct: 317 QIPGFLDLPLNDQMKLLQVSWAEILTLQTTFRSLPFNGKLCFATDVWMDE 366
>gi|405952211|gb|EKC20050.1| Estrogen-related receptor gamma [Crassostrea gigas]
Length = 442
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 108/212 (50%), Gaps = 26/212 (12%)
Query: 21 SSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCL 80
+S ++S CD + P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C
Sbjct: 84 TSITNSINCD--QENIELPKRLCLVCGDVASGYHYGVSSCEACKAFFKRTIQGNIEYSCP 141
Query: 81 ADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGR--------------LP 126
A+ C + KRRR CQ CRFQKCL+VGM++E VR D ++G R + P
Sbjct: 142 ANGDCEITKRRRKACQACRFQKCLRVGMLREGVRLDRVRGGRQKYKRTVDSGPIVQQIFP 201
Query: 127 SKPKSPQESPPSPP------VSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVD---- 176
K+ ES S +S+ L + E I E + +F + ++ D
Sbjct: 202 MIKKACVESTKSDNKILTQLISIEQQLDKLYVNTESEILEGGEEVRFLATVSDLADRELV 261
Query: 177 VIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ +A ++PGF L DQ L Q + LE+
Sbjct: 262 ITISWAKQVPGFCTLSLSDQMNLLQHSWLEIL 293
>gi|347810666|gb|AEP25402.1| ecdysteroid receptor [Plutella xylostella]
Length = 545
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 153/344 (44%), Gaps = 37/344 (10%)
Query: 20 LSSASSSPGC----DTSRPTP-PSPSQ---LCAVCGDIAACQHYGVRTCEGCKGFFKRTV 71
LS ASS GC D RP P+P Q LC VCGD A+ HY TCEGCKGFF+R+V
Sbjct: 109 LSPASSVNGCSNDGDARRPKKGPAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 168
Query: 72 QKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV---------RTDSLKGR- 121
K + Y+C AC +D R +CQ CR +KCL V M E V R + + R
Sbjct: 169 TKNAVYICKFGHACEMDMYMRRKCQECRLKKCLAVCMRPECVVPETQCAIKRKEKMAQRE 228
Query: 122 RGRLP---------SKPKSPQESPPSPPVSLITALYRE--PNPLEPPIAEPEKIQQFYSL 170
+ +LP P E PP ++ L E P L + E + + L
Sbjct: 229 KDKLPVSTTTVDDHMSPIMQCEPPPPEAARILDCLQHEVVPRFLSDKLLEQNRAKNIPPL 288
Query: 171 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYS 230
+I G+ +ED + + Q+ ++ + E P +Q
Sbjct: 289 TPNQKFLIARLVWYQDGYEQPSEEDLKRVTQT------WQASDDDEEESDMP--FRQITE 340
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ +V +I FA +PGF+ + + DQ L ++ S E+ +LR+ R ++F N
Sbjct: 341 MTILTVQLIVEFAKGLPGFAKISQPDQITLLKACSSEVMMLRVVRRYDVTTDSILFANNQ 400
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ +++ + +L FC+ ++ + +D +A L A+ +
Sbjct: 401 AYTRDNYRKAGMAYVIEDLLHFCRCMYSLNMDNIHYALLTAIVI 444
>gi|432865288|ref|XP_004070509.1| PREDICTED: retinoic acid receptor gamma-A isoform 2 [Oryzias
latipes]
Length = 510
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 130/293 (44%), Gaps = 44/293 (15%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV +CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 85 CFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCQINKVTRNRCQYCRLQK 144
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE 162
C +VGM K ++++ R + K P S Y LE + +
Sbjct: 145 CFEVGMSK-----EAVRNDRNKKKKDVKEEMVLPES---------YELSGELEELVNKVS 190
Query: 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEP 222
K Q F LC+ + S+ + L+ + +
Sbjct: 191 KAHQ-------------------ETFPSLCQLGKYTTNSSSDHRV------QLDLGLWD- 224
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
+F L T + I FA ++PGF+ L DQ L +SA L++ +LR+ R E
Sbjct: 225 ----KFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSACLDILMLRICTRYTPEQD 280
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 281 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 333
>gi|2738906|gb|AAB94567.1| AamEcRA2 [Amblyomma americanum]
Length = 570
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 144/321 (44%), Gaps = 30/321 (9%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
P P +LC VCGD A+ HY TCEGCKGFF+R++ K + Y C C +D R
Sbjct: 180 PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCDIDMYMRR 239
Query: 94 RCQFCRFQKCLQVGMVKEVVRTD---SLKGRRGRLPSKPKSPQESPPSPPVSLITALYRE 150
+CQ CR +KCL VGM E V + ++K R + K + + SP + +
Sbjct: 240 KCQECRLKKCLSVGMRPECVVPEYQCAIK-RESKKHQKDRPNSTTRESPSALMAPSSVGG 298
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK-----IPGFSDLCKEDQELLFQSASL 205
+P P+ +S+ H DK PG L ++L+ +
Sbjct: 299 VSPTSQPMGG----------GGSSLGSSNHEEDKKPVVLSPGVKPLSSSQEDLINKLVYY 348
Query: 206 ELFYREPNPLEP------PIAEPE-----KIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 254
+ + P+ + P+ + E + Q + +V +I F+ ++PGF L +
Sbjct: 349 QQEFESPSEEDMKKTTPFPLGDSEEDNQRRFQHITEITILTVQLIVEFSKRVPGFDTLAR 408
Query: 255 EDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQ 314
EDQ L ++ S E+ +LR A + + ++F N + + + D +A+ FC+
Sbjct: 409 EDQITLLKACSSEVMMLRGARKYDVKTDSIVFANNQPYTRDNYRSASVGDSADALFRFCR 468
Query: 315 SLHLMEIDISAFACLCALTLI 335
+ + +D + +A L A+ +
Sbjct: 469 KMCQLRVDNAEYALLTAIVIF 489
>gi|13431919|sp|Q9W6N4.1|THA_HIPHI RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear
receptor subfamily 1 group A member 1
gi|4929197|gb|AAD33899.1|AF143296_1 thyroid hormone receptor-alpha [Hippoglossus hippoglossus]
Length = 416
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 140/299 (46%), Gaps = 32/299 (10%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSK--YVCLADKACPVDKRRRNRCQFCRF 100
C VCGD A HY TCEGCKGFF+RT+QK Y C + C +DK RN+CQ CRF
Sbjct: 59 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRF 118
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++V DS + + RL + + ++ ++ L P EP AE
Sbjct: 119 KKCISVGMAMDLVLDDSKRVAKRRLIEENREKRKRE-----EMVRTLQVRP---EPDTAE 170
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPI- 219
+ L+ + D RH + + K+ ++ L P+ P
Sbjct: 171 -------WELIRMATDAHRHTNAQGSSW----KQKRKFLSDDIG-------QGPMVPTSD 212
Query: 220 ---AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR 276
+ E +F ++T ++ + FA K+P FS+L EDQ +L + +E+ LR A R
Sbjct: 213 GDKVDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVR 272
Query: 277 TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
E L + ++++Q + +AI + +SL +D + A + A+ L+
Sbjct: 273 YDPESETLTLNGEMAVKREQLKNGGLGVVSDAIFDLGKSLAQFNLDDTEVALMQAVLLM 331
>gi|410903442|ref|XP_003965202.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Takifugu
rubripes]
Length = 447
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 117/230 (50%), Gaps = 35/230 (15%)
Query: 7 SSSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAAC 52
+S SP+L ++P++S SS+ G + P PS +C +CGD ++
Sbjct: 72 GASVSPQL--NSPMNSVSSTEDIKPPLGINGVMKVPAQPSGTSLSLSKHICTICGDRSSG 129
Query: 53 QHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEV 112
+HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E
Sbjct: 130 KHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREA 189
Query: 113 VRTDSLKGRRGRLPSKPKSPQESPP----SPPVSLI----------TALYREPNPLEPPI 158
V+ + R R K ++ ES PV I T Y E N P
Sbjct: 190 VQEE-----RQRAKDKNENEVESTSCASEDMPVEKILEAEQAVEPKTETYIETNLSVPSN 244
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 245 SPNDPVTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELL 294
>gi|351708209|gb|EHB11128.1| Oxysterols receptor LXR-alpha [Heterocephalus glaber]
Length = 477
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 153/317 (48%), Gaps = 45/317 (14%)
Query: 33 RPTPPSP----SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVD 88
R P+P ++LC+VCGD A+ HY V +CEGCKGFF+R+V KG+ YVC + CP+D
Sbjct: 80 RKKGPAPKMLGNELCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKGAHYVCHSGGHCPMD 139
Query: 89 KRRRNRCQFCRFQKCLQVGMVKE-VVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL 147
R +CQ CR +KC Q GM +E V+ + ++ ++ + + ++ S P+ P
Sbjct: 140 TYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQEEEQAQATSVPTRPAP----- 194
Query: 148 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
P+ + P ++ PE++ L+ + FSD +
Sbjct: 195 ---PHQVLPQLS-PEQLGMIEKLVAAQQQCNKR------SFSDQLRVT------------ 232
Query: 208 FYREPNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 263
P P+ P E QQ F L SV I FA ++PGF L +EDQ L ++
Sbjct: 233 ----PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKT 288
Query: 264 AS----LELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHL 318
++ +E+ +L + R + F ++ ++ +++N I EF ++++
Sbjct: 289 STIEVAIEVMLLETSRRYNPGSESITFLKNFSYNREDFAKAGLQVEFINPIFEFSRAMNE 348
Query: 319 MEIDISAFACLCALTLI 335
++++ + FA L A+++
Sbjct: 349 LQLNDAEFALLIAISIF 365
>gi|112820331|gb|ABI24019.1| retinoid X receptor beta [Sus scrofa]
Length = 484
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 133/296 (44%), Gaps = 52/296 (17%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LCA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C VDKR+RNRCQ+CR+
Sbjct: 202 RLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRY 261
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL GM +E V+ + +G+ + +P PV I LE +A
Sbjct: 262 QKCLATGMKREAVQEERQRGK--DKDGDGEGAGGAPEEMPVDRI---------LEAELAV 310
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
+K Q + D + +++C Q+A +LF
Sbjct: 311 EQKSDQGVEGPGGTGGSGSSPNDPV---TNIC--------QAADKQLF------------ 347
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ +A +IP FS L +DQ +L ++ EL + ++R+
Sbjct: 348 -----------------TLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDV 390
Query: 281 DTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
++ G+ + + + G + + E + M +D + CL A+ L
Sbjct: 391 RDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILF 446
>gi|24308520|ref|NP_571350.1| retinoic acid receptor RXR-beta-A [Danio rerio]
gi|1046299|gb|AAC59722.1| retinoid X receptor epsilon [Danio rerio]
gi|94733758|emb|CAK11471.1| retinoid x receptor, beta [Danio rerio]
gi|1583307|prf||2120366B retinoid X receptor:ISOTYPE=epsilon
Length = 438
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 107/213 (50%), Gaps = 40/213 (18%)
Query: 19 PLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV 78
PLSS S P R LCA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y
Sbjct: 76 PLSSHSPGPMVSQKR--------LCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYT 127
Query: 79 CLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSL----------KGRRGRLPSK 128
C +K C VDKR+RNRCQ+CR+QKCL +GM +EVV+ + K R G + S
Sbjct: 128 CRDNKDCLVDKRQRNRCQYCRYQKCLAMGMKREVVQDERQRSVQEERQRNKERDGEVESS 187
Query: 129 PKSPQESP------PSPPVSLITALYRE-------PNPLEPPIAEPEKIQQFYSLLTTSV 175
+ +E P V T L+ + PN I + Q F
Sbjct: 188 SAANEEMPVEKILEAEMAVEQKTELHADGSSGGSSPNDPVTNICQAADKQLF-------- 239
Query: 176 DVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ +A +IP FS+L +DQ +L ++ EL
Sbjct: 240 -TLVEWAKRIPHFSELSLDDQVILLRAGWNELL 271
>gi|410979449|ref|XP_003996096.1| PREDICTED: retinoic acid receptor RXR-alpha [Felis catus]
Length = 527
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
+ SP+L S+P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 153 GTSSPQL--SSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 210
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 211 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 270
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G+ R ++ +S + PV I T Y + N P + +
Sbjct: 271 QEERQRGKD-RNENEVESTSSANEDMPVEKILEAELAVEPKTETYVDANMGLNPNSPNDP 329
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 330 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 374
>gi|94482821|gb|ABF22437.1| thyroid hormone receptor alpha 1 [Takifugu rubripes]
Length = 321
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 133/271 (49%), Gaps = 34/271 (12%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKY-VCLADKACPVDKRRRNRCQFCRF 100
LC VCGDIA+ HYGV CEGCKGFF+R++Q+ Y +C+ ++ C + + RNRCQ CRF
Sbjct: 4 LCKVCGDIASGFHYGVHACEGCKGFFRRSIQQNINYKMCVKNENCLIMRMNRNRCQHCRF 63
Query: 101 QKCLQVGMVKEVVRTDSLKGRRG----------RLPSKPKSPQESPPSPPVSLITAL-YR 149
+KCL VGM ++V +D+ + R + + P + S S++ L
Sbjct: 64 KKCLSVGMSRDVTSSDNKQAFRNVDNSGYAFSISTNNNYEQPHSTTNSRGTSVVCLLSLS 123
Query: 150 EPNPLEP-PIAEPEKIQQ-----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 203
+ PL P++ PE+ Q F T +V + FA IPGF +L + DQ +L +S
Sbjct: 124 KACPLNAWPVSGPERSSQEIWESFSQCFTPAVKEVVEFAKGIPGFQELSQHDQVMLLKSG 183
Query: 204 SLE--------LFYREPNPLEPPIAEPEKIQQFYSL-LTTSVDVIRHFADKIPGFSDLCK 254
+ + LF E + + + + +L + + +D + F++K+ +
Sbjct: 184 TFQVLMVRFCTLFNAEKHTVTFLNGQTYPLSSLRALGMGSLLDAMFEFSEKLGSLG--LE 241
Query: 255 EDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
D+ LF + VL A RT D + +
Sbjct: 242 PDEMALFMAV-----VLVSADRTGISDMRAV 267
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 218 PIAEPEKIQQ-----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
P++ PE+ Q F T +V + FA IPGF +L + DQ +L +S + ++ ++R
Sbjct: 132 PVSGPERSSQEIWESFSQCFTPAVKEVVEFAKGIPGFQELSQHDQVMLLKSGTFQVLMVR 191
Query: 273 LAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCAL 332
AE + F NG + L+A+ EF + L + ++ A A+
Sbjct: 192 FCTLFNAEKHTVTFLNGQTYPLSSLRALGMGSLLDAMFEFSEKLGSLGLEPDEMALFMAV 251
Query: 333 TLI 335
L+
Sbjct: 252 VLV 254
>gi|189031270|gb|ACD74808.1| ultraspiracle isoform 1 [Helicoverpa armigera]
Length = 414
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 95/181 (52%), Gaps = 14/181 (7%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C ++ C +DKR+RNRCQ+CR+
Sbjct: 59 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRY 118
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSP-------------QESPPSPPVSLITAL 147
QKCL GM +E V+ + +G RG + P S ES + P L
Sbjct: 119 QKCLACGMKREAVQEERQRGARGTEDAHPSSSVQVQELSIERLLEMESLVADPSEEFQFL 178
Query: 148 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
P+ PP + + + + +A IP FS L EDQ LL + + EL
Sbjct: 179 RVGPDSNVPPKFRA-PVSSLCQIGNKQIAALVVWARDIPHFSQLELEDQILLIKGSWNEL 237
Query: 208 F 208
Sbjct: 238 L 238
>gi|194865293|ref|XP_001971357.1| GG14911 [Drosophila erecta]
gi|190653140|gb|EDV50383.1| GG14911 [Drosophila erecta]
Length = 497
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 136/288 (47%), Gaps = 35/288 (12%)
Query: 21 SSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCL 80
S+AS+ G + R +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C
Sbjct: 108 SNASAGTGSGSVRD---ELRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCP 164
Query: 81 ADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSP-------- 132
A+ C ++KRRR CQ CRFQKCL +GM+KE VR D ++G R + P S
Sbjct: 165 ANNECEINKRRRKACQACRFQKCLLMGMLKEGVRLDRVRGGRQKYRRNPVSNSYQTMQLL 224
Query: 133 -QESPPSP-PVSLITALYR-EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 189
Q + S V ++ L EP+ L P+ + TTS+ D+ S
Sbjct: 225 YQSNTTSLCDVKILEVLNSYEPDALSVQTPSPQ-------VHTTSIT-----NDEASSSS 272
Query: 190 DLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTS--VDVIRHFADKIP 247
K + + +F +P +I S + V VI +A +IP
Sbjct: 273 GSIKLESSVGVTPNGTCIFQ------NNNNNDPNEILSVLSDIYDKELVSVI-GWAKQIP 325
Query: 248 GFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQ 295
GF DL DQ L Q + E+ L+L +R+ + KL F V +++
Sbjct: 326 GFIDLPLNDQMKLLQVSWAEILTLQLTFRSLPFNGKLCFATDVWMDEH 373
>gi|13124576|sp|O97716.1|THA_PIG RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear
receptor subfamily 1 group A member 1; AltName:
Full=c-erbA-1; AltName: Full=c-erbA-alpha
gi|4138570|emb|CAA06702.1| thyroid hormone receptor alpha 2 [Sus scrofa]
Length = 506
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 140/295 (47%), Gaps = 24/295 (8%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG--SKYVCLADKACPVDKRRRNRCQFCRF 100
C VCGD A HY TCEGCKGFF+RT+QK Y C D C +DK RN+CQ CRF
Sbjct: 53 CVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRF 112
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
+KC+ VGM ++V DS + + +L + + + +I +L + P P
Sbjct: 113 KKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKE-----EMIRSLQQRPEPT------ 161
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
PE+ + L+ + + R + + K+ ++ L P+ + +
Sbjct: 162 PEE----WDLIHVATEAHRSTNAQGSHW----KQRRKFLPDDIGQSPIVSMPDGDKVDL- 212
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
E +F ++T ++ + FA K+P FS+L EDQ +L + +E+ LR A R E
Sbjct: 213 --EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPE 270
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + ++++Q + +AI E +SL +D + A L A+ L+
Sbjct: 271 SDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLM 325
>gi|77632652|gb|ABB00308.1| ultraspiracle protein [Scaptotrigona depilis]
Length = 427
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 107/203 (52%), Gaps = 16/203 (7%)
Query: 16 HSAPLSSASSSPGCDTSRPTPPS-----PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70
HS LS++ S + P PP+ LC++CGD A+ +HYGV +CEGCKGFFKRT
Sbjct: 79 HSNLLSTSPSGQNKAVA-PYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 137
Query: 71 VQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
V+K Y C +K+C +DKR+RNRCQ+CR+QKCL +GM + V+ + R R + +
Sbjct: 138 VRKDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKRGAVQEE-----RQRTKERDQ 192
Query: 131 SPQESPPS-----PPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
S ES S P ++ A R +E + + + + +A I
Sbjct: 193 SEVESTSSLHSDMPIERILEAEKRVECKMEQQGNYENAVSHICNATNKQLFQLVAWAKHI 252
Query: 186 PGFSDLCKEDQELLFQSASLELF 208
P F+ L EDQ LL ++ EL
Sbjct: 253 PHFTSLPLEDQVLLLRAGWNELL 275
>gi|380800431|gb|AFE72091.1| retinoic acid receptor RXR-beta, partial [Macaca mulatta]
Length = 478
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 145/340 (42%), Gaps = 66/340 (19%)
Query: 11 SPKLRHSAPLSSASSSPGCDTSRPT--------------PPSPSQLCAVCGDIAACQHYG 56
SP++ + L S P D P P + +LCA+CGD ++ +HYG
Sbjct: 104 SPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYG 163
Query: 57 VRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTD 116
V +CEGCKGFFKRT++K Y C +K C VDKR+RNRCQ+CR+QKCL GM +E V+ +
Sbjct: 164 VYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEE 223
Query: 117 SLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVD 176
+G+ + +P PV I LE +A +K Q +
Sbjct: 224 RQRGKDKD--GDGEGAGGAPEEMPVDRI---------LEAELAVEQKSDQGVEGPGGTGG 272
Query: 177 VIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSV 236
D + +++C Q+A +LF
Sbjct: 273 SGSSPNDPV---TNIC--------QAADKQLF---------------------------- 293
Query: 237 DVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ 296
+ +A +IP FS L +DQ +L ++ EL + ++R+ ++ G+ + +
Sbjct: 294 -TLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNS 352
Query: 297 CQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ G + + E + M +D + CL A+ L
Sbjct: 353 AHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILF 392
>gi|348576404|ref|XP_003473977.1| PREDICTED: retinoic acid receptor RXR-beta-like [Cavia porcellus]
Length = 531
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 133/296 (44%), Gaps = 52/296 (17%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LCA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C VDKR+RNRCQ+CR+
Sbjct: 201 RLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRY 260
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL GM +E V+ + +G+ + +P PV I LE +A
Sbjct: 261 QKCLATGMKREAVQEERQRGKDKD--GDGEGAGGAPEEMPVDRI---------LEAELAV 309
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
+K Q + D + +++C Q+A +LF
Sbjct: 310 EQKSDQGVEGPGGTGGSGTSPNDPV---TNIC--------QAADKQLF------------ 346
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ +A +IP FS L +DQ +L ++ EL + ++R+
Sbjct: 347 -----------------TLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDV 389
Query: 281 DTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
++ G+ + + + G + + E + M +D + CL A+ L
Sbjct: 390 RDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILF 445
>gi|124054090|gb|ABM89229.1| retinoid X receptor alpha a [Danio rerio]
Length = 340
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 99/178 (55%), Gaps = 11/178 (6%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+
Sbjct: 129 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRY 188
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYRE 150
QKCL +GM +E V+ + + + R ++ +S + PV I T Y E
Sbjct: 189 QKCLAMGMKREAVQEERQRAKE-RSENEVESTSSANEDMPVEKILEAELAVEPKTETYIE 247
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
N P + + + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 248 TNVPMPSNSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 305
>gi|225001482|gb|ACN78601.1| retinoid X receptor 1 [Fenneropenaeus chinensis]
Length = 442
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 95/173 (54%), Gaps = 5/173 (2%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C ++ C +DKR+RNRCQ+CR+
Sbjct: 113 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERGCTIDKRQRNRCQYCRY 172
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSP----PVSLITALYREPNPLEP 156
QKCL +GM +E V + + R R + +S P+S I +P +
Sbjct: 173 QKCLSMGMKREAVLVGAAEEERQRTKGDKEVDTDSALGGVNDMPISQIRDAELNSDPTDD 232
Query: 157 PI-AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ E + + + + +A IP F++L +DQ +L ++ EL
Sbjct: 233 LLFEEGDAVSHICQAADRHLVQLVEWAKHIPHFTELSVDDQVILLKAGWNELL 285
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSF 301
+A IP F++L +DQ +L ++ EL + ++R+ ++ G+V+ + +
Sbjct: 258 WAKHIPHFTELSVDDQVILLKAGWNELLIASFSHRSMGVKDGIVLATGLVVHRSSAHHAG 317
Query: 302 GDDWLNAIL-EFCQSLHLMEIDISAFACLCALTL 334
D + +L E + M++D + CL ++ L
Sbjct: 318 VGDIFDRVLSELVAKMKEMKMDKTELGCLRSIVL 351
>gi|338711954|ref|XP_003362626.1| PREDICTED: thyroid hormone receptor alpha-like [Equus caballus]
Length = 481
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 143/304 (47%), Gaps = 24/304 (7%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG--SKYVCLADKACPVDKRR 91
P+ + C VCGD A HY TCEGCKGFF+RT+QK Y C D C +DK
Sbjct: 44 PSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKIT 103
Query: 92 RNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREP 151
RN+CQ CRF+KC+ VGM ++V DS + + +L + + + +I +L + P
Sbjct: 104 RNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKE-----EMIRSLQQRP 158
Query: 152 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYRE 211
P PE+ + L+ + + R + + K+ ++ L
Sbjct: 159 EPT------PEE----WDLIHVATEAHRSTNAQGSHW----KQRRKFLPDDIGQSPIVSM 204
Query: 212 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVL 271
P+ + + E +F ++T ++ + FA K+P FS+L EDQ +L + +E+ L
Sbjct: 205 PDGDKVDL---EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSL 261
Query: 272 RLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
R A R E L + ++++Q + +AI E +SL +D + A L A
Sbjct: 262 RAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQA 321
Query: 332 LTLI 335
+ L+
Sbjct: 322 VLLM 325
>gi|410958898|ref|XP_003986050.1| PREDICTED: retinoic acid receptor RXR-beta [Felis catus]
Length = 532
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 146/345 (42%), Gaps = 66/345 (19%)
Query: 6 SSSSESPKLRHSAPLSSASSSPGCDTSRPT--------------PPSPSQLCAVCGDIAA 51
S SP++ + L S P D P P + +LCA+CGD ++
Sbjct: 153 SGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSS 212
Query: 52 CQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKE 111
+HYGV +CEGCKGFFKRT++K Y C +K C VDKR+RNRCQ+CR+QKCL GM +E
Sbjct: 213 GKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKRE 272
Query: 112 VVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLL 171
V+ + +G+ + +P PV I LE +A +K Q
Sbjct: 273 AVQEERQRGKDKD--GDGEGAGGAPEEMPVDRI---------LEAELAVEQKSDQGVEGP 321
Query: 172 TTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSL 231
+ D + +++C Q+A +LF
Sbjct: 322 GGTGGGTSSPNDPV---TNIC--------QAADKQLF----------------------- 347
Query: 232 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVV 291
+ +A +IP FS L +DQ +L ++ EL + ++R+ ++ G+
Sbjct: 348 ------TLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLH 401
Query: 292 LEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + + G + + E + M +D + CL A+ L
Sbjct: 402 VHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILF 446
>gi|337720|gb|AAA60293.1| retinoid X receptor beta [Homo sapiens]
Length = 533
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 146/345 (42%), Gaps = 66/345 (19%)
Query: 6 SSSSESPKLRHSAPLSSASSSPGCDTSRPT--------------PPSPSQLCAVCGDIAA 51
S SP++ + L S P D P P + +LCA+CGD ++
Sbjct: 154 SGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSS 213
Query: 52 CQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKE 111
+HYGV +CEGCKGFFKRT++K Y C +K C VDKR+RNRCQ+CR+QKCL GM +E
Sbjct: 214 GKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKRE 273
Query: 112 VVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLL 171
V+ + +G+ + +P PV I LE +A +K Q
Sbjct: 274 AVQEERQRGKDKD--GDGEGAGGAPEEMPVDRI---------LEAELAVEQKSDQGVEGP 322
Query: 172 TTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSL 231
+ D + +++C Q+A +LF
Sbjct: 323 GGTGGSGSSPNDPV---TNIC--------QAADKQLF----------------------- 348
Query: 232 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVV 291
+ +A +IP FS L +DQ +L ++ EL + ++R+ ++ G+
Sbjct: 349 ------TLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLH 402
Query: 292 LEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + + G + + E + M +D + CL A+ L
Sbjct: 403 VHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILF 447
>gi|328711328|ref|XP_001948999.2| PREDICTED: hypothetical protein LOC100168575 [Acyrthosiphon pisum]
Length = 1080
Score = 121 bits (303), Expect = 5e-25, Method: Composition-based stats.
Identities = 53/111 (47%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
Query: 36 PPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRC 95
PP P +LC VCGD+A+ HYGV +CE CK FFKRT+Q +Y C A C ++KRRR C
Sbjct: 258 PPPPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASGDCEINKRRRKAC 317
Query: 96 QFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITA 146
Q CR QKCL+ GM+KE VR D ++G R + +P +P P+ +S++ +
Sbjct: 318 QACRMQKCLRTGMLKEGVRLDRVRGGRQKYRRQPSTP---IPTAAISVVQS 365
>gi|155369638|ref|NP_001094389.1| thyroid hormone receptor alpha [Ovis aries]
gi|2500920|sp|Q28570.1|THA_SHEEP RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear
receptor subfamily 1 group A member 1
gi|1136116|emb|CAA92650.1| thyroid hormone receptor alpha1 [Ovis aries]
Length = 410
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 150/331 (45%), Gaps = 24/331 (7%)
Query: 7 SSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGF 66
SS+ SP + S P+ + C VCGD A HY TCEGCKGF
Sbjct: 17 SSTRSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGF 76
Query: 67 FKRTVQKGSK--YVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGR 124
F+RT+QK Y C D C +DK RN+CQ CRF+KC+ VGM ++V DS + + +
Sbjct: 77 FRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRK 136
Query: 125 LPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 184
L + + + +I +L + P P PE+ + L+ + + R +
Sbjct: 137 LIEQNRERRRKE-----EMIRSLQQRPEPT------PEE----WDLIHVATEAHRSTNAQ 181
Query: 185 IPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 244
+ K+ ++ L P+ + + E +F ++T ++ + FA
Sbjct: 182 GSHW----KQRRKFLPDDIGQSPIVSMPDGDK---VDLEAFSEFTKIITPAITRVVDFAK 234
Query: 245 KIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDD 304
K+P FS+L EDQ +L + +E+ LR A R E L + ++++Q +
Sbjct: 235 KLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGV 294
Query: 305 WLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+AI E +SL +D + A L A+ L+
Sbjct: 295 VSDAIFELGKSLSAFNLDDTEVALLQAVLLM 325
>gi|400270857|gb|AFP75252.1| retinoid X receptor, partial [Tupaia belangeri]
Length = 431
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 27/225 (12%)
Query: 8 SSESPKLRHSAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQ 53
+ SP+L S+P++ SSS G + P PS +CA+CGD ++ +
Sbjct: 57 GTASPQL--SSPMNPVSSSEDVKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGK 114
Query: 54 HYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVV 113
HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V
Sbjct: 115 HYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 174
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPSPPVSLI----------TALYREPNPLEPPIAEPEK 163
+ + +G+ R S+ + + PV I T Y E N P + +
Sbjct: 175 QEERQRGKD-RNESEVEPTSSANEDMPVEKILEAELAVEPKTDTYVEANMGLSPSSPNDP 233
Query: 164 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + + +A ++P FS+L +DQ +L ++ EL
Sbjct: 234 VTNICQAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELL 278
>gi|390432211|gb|AFL91697.1| retinoid X receptor isoform b [Azumapecten farreri]
Length = 450
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 105/196 (53%), Gaps = 13/196 (6%)
Query: 25 SSPGCDTSRPTPPSP------SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV 78
SPG +S P P P +CA+CGD A+ +HYGV +CEGCKGFFKRTV+K Y
Sbjct: 103 GSPGSVSSPPNPHMPHTTLSSKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYA 162
Query: 79 CLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPS 138
C D+ C +DKR+RNRCQ+CR+ KCL +GM +E +++ R R+ K + ES S
Sbjct: 163 CRDDRNCVIDKRQRNRCQYCRYMKCLAMGMKREACLA-AVQEERQRVKEKGEGEVESTSS 221
Query: 139 P----PVS--LITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 192
PV L + L +P + + + + + +A +IP F++L
Sbjct: 222 ANSDMPVEKVLDSELSVDPKLDTYIDTQKDPVTNICQAADKQLFTLVAWARRIPHFTELP 281
Query: 193 KEDQELLFQSASLELF 208
EDQ +L ++ EL
Sbjct: 282 LEDQVILLRAGWNELL 297
>gi|332246155|ref|XP_003272215.1| PREDICTED: retinoic acid receptor RXR-beta [Nomascus leucogenys]
Length = 533
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 133/296 (44%), Gaps = 52/296 (17%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LCA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C VDKR+RNRCQ+CR+
Sbjct: 203 RLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRY 262
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL GM +E V+ + +G+ + +P PV I LE +A
Sbjct: 263 QKCLATGMKREAVQEERQRGKDKD--GDGEGAGGAPEEMPVDRI---------LEAELAV 311
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
+K Q + D + +++C Q+A +LF
Sbjct: 312 EQKSDQGVEGPGGTGGSGSSPNDPV---TNIC--------QAADKQLF------------ 348
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ +A +IP FS L +DQ +L ++ EL + ++R+
Sbjct: 349 -----------------TLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDV 391
Query: 281 DTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
++ G+ + + + G + + E + M +D + CL A+ L
Sbjct: 392 RDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILF 447
>gi|297661275|ref|XP_002809190.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Pongo abelii]
Length = 532
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 133/296 (44%), Gaps = 52/296 (17%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LCA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C VDKR+RNRCQ+CR+
Sbjct: 202 RLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRY 261
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL GM +E V+ + +G+ + +P PV I LE +A
Sbjct: 262 QKCLATGMKREAVQEERQRGKDKD--GDGEGAGGAPEEMPVDRI---------LEAELAV 310
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
+K Q + D + +++C Q+A +LF
Sbjct: 311 EQKSDQGVEGPGGTGGSGSSPNDPV---TNIC--------QAADKQLF------------ 347
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ +A +IP FS L +DQ +L ++ EL + ++R+
Sbjct: 348 -----------------TLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDV 390
Query: 281 DTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
++ G+ + + + G + + E + M +D + CL A+ L
Sbjct: 391 RDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILF 446
>gi|297290572|ref|XP_001108780.2| PREDICTED: retinoic acid receptor RXR-beta-like [Macaca mulatta]
Length = 534
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 133/296 (44%), Gaps = 52/296 (17%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LCA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C VDKR+RNRCQ+CR+
Sbjct: 204 RLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRY 263
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL GM +E V+ + +G+ + +P PV I LE +A
Sbjct: 264 QKCLATGMKREAVQEERQRGKDKD--GDGEGAGGAPEEMPVDRI---------LEAELAV 312
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
+K Q + D + +++C Q+A +LF
Sbjct: 313 EQKSDQGVEGPGGTGGSGSSPNDPV---TNIC--------QAADKQLF------------ 349
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ +A +IP FS L +DQ +L ++ EL + ++R+
Sbjct: 350 -----------------TLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDV 392
Query: 281 DTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
++ G+ + + + G + + E + M +D + CL A+ L
Sbjct: 393 RDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILF 448
>gi|11415052|ref|NP_068811.1| retinoic acid receptor RXR-beta isoform 2 [Homo sapiens]
gi|114606827|ref|XP_001168893.1| PREDICTED: retinoic acid receptor RXR-beta isoform 4 [Pan
troglodytes]
gi|397474336|ref|XP_003808638.1| PREDICTED: retinoic acid receptor RXR-beta [Pan paniscus]
gi|402866633|ref|XP_003897483.1| PREDICTED: retinoic acid receptor RXR-beta [Papio anubis]
gi|1350911|sp|P28702.2|RXRB_HUMAN RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|30448|emb|CAA45087.1| retinoic acid X receptor b [Homo sapiens]
gi|3172498|gb|AAC18599.1| retinoic X receptor B [Homo sapiens]
gi|3820986|emb|CAA20239.1| retinoid X receptor, beta [Homo sapiens]
gi|4249766|gb|AAD13794.1| retinoic X receptor beta [Homo sapiens]
gi|12654659|gb|AAH01167.1| Retinoid X receptor, beta [Homo sapiens]
gi|30583399|gb|AAP35944.1| retinoid X receptor, beta [Homo sapiens]
gi|60655367|gb|AAX32247.1| retinoid X receptor beta [synthetic construct]
gi|119624084|gb|EAX03679.1| retinoid X receptor, beta [Homo sapiens]
gi|325495499|gb|ADZ17355.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222100|gb|JAA08269.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263016|gb|JAA19474.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295524|gb|JAA26362.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330369|gb|JAA34131.1| retinoid X receptor, beta [Pan troglodytes]
Length = 533
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 133/296 (44%), Gaps = 52/296 (17%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LCA+CGD ++ +HYGV +CEGCKGFFKRT++K Y C +K C VDKR+RNRCQ+CR+
Sbjct: 203 RLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRY 262
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE 160
QKCL GM +E V+ + +G+ + +P PV I LE +A
Sbjct: 263 QKCLATGMKREAVQEERQRGKDKD--GDGEGAGGAPEEMPVDRI---------LEAELAV 311
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
+K Q + D + +++C Q+A +LF
Sbjct: 312 EQKSDQGVEGPGGTGGSGSSPNDPV---TNIC--------QAADKQLF------------ 348
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ +A +IP FS L +DQ +L ++ EL + ++R+
Sbjct: 349 -----------------TLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDV 391
Query: 281 DTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
++ G+ + + + G + + E + M +D + CL A+ L
Sbjct: 392 RDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILF 447
>gi|348562377|ref|XP_003466987.1| PREDICTED: retinoic acid receptor alpha-like isoform 1 [Cavia
porcellus]
Length = 459
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 132/295 (44%), Gaps = 49/295 (16%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 85 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 144
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAE-P 161
C +VGM KE S++ R + + P+ S E L P + E
Sbjct: 145 CFEVGMSKE-----SVRNDRNKKKKEVPKPESS--------------ESCTLTPEVGELI 185
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA- 220
EK+++ + + P L K Y N E ++
Sbjct: 186 EKVRKAHQ-------------ETFPALCQLGK---------------YTTNNSSEQRVSL 217
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + +F L T + FA ++PGF+ L DQ L ++A L++ +LR+ R E
Sbjct: 218 DIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPE 277
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ F +G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 278 QDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 332
>gi|2738902|gb|AAB94565.1| AamEcRA3 [Amblyomma americanum]
Length = 444
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 146/324 (45%), Gaps = 36/324 (11%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
P P +LC VCGD A+ HY TCEGCKGFF+R++ K + Y C C +D R
Sbjct: 54 PAPRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCDIDMYMRR 113
Query: 94 RCQFCRFQKCLQVGMVKEVVRTD---SLKGRRGRLPSKPKSPQESPPSPPVSLITALYRE 150
+CQ CR +KCL VGM E V + ++K R + K + + SP + +
Sbjct: 114 KCQECRLKKCLSVGMRPECVVPEYQCAIK-RESKKHQKDRPNSTTRESPSALMAPSSVGG 172
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK-----IPGFSDLCKEDQELL------ 199
+P P+ +S+ H DK PG L ++L+
Sbjct: 173 VSPTSQPMG----------GGGSSLGSSNHEEDKKPVVLSPGVKPLSSSQEDLINKLVYY 222
Query: 200 ---FQSASLELFYREPNPLEPPIAEPE-----KIQQFYSLLTTSVDVIRHFADKIPGFSD 251
F+S S E ++ P P+ + E + Q + +V +I F+ ++PGF
Sbjct: 223 QQEFESPSEEDM-KKTTPF--PLGDSEEDNQRRFQHITEITILTVQLIVEFSKRVPGFDT 279
Query: 252 LCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILE 311
L +EDQ L ++ S E+ +LR A + + ++F N + + + D +A+
Sbjct: 280 LAREDQITLLKACSSEVMMLRGARKYDVKTDSIVFANNQPYTRDNYRSASVGDSADALFR 339
Query: 312 FCQSLHLMEIDISAFACLCALTLI 335
FC+ + + +D + +A L A+ +
Sbjct: 340 FCRKMCQLRVDNAEYALLTAIVIF 363
>gi|47213822|emb|CAF95413.1| unnamed protein product [Tetraodon nigroviridis]
Length = 290
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 111/220 (50%), Gaps = 33/220 (15%)
Query: 17 SAPLSSASSSP------GCDTSRPTPPSPS--------QLCAVCGDIAACQHYGVRTCEG 62
++P++S SS+ G + P PS +C +CGD ++ +HYGV +CEG
Sbjct: 3 NSPMNSVSSTEDIKPPLGINGVMKVPAQPSGTSLSLSKHICTICGDRSSGKHYGVYSCEG 62
Query: 63 CKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRR 122
CKGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ + R
Sbjct: 63 CKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREAVQEE-----R 117
Query: 123 GRLPSKPKSPQESPP----SPPVSLI----------TALYREPNPLEPPIAEPEKIQQFY 168
R K ++ ES PV I T Y E N P + + +
Sbjct: 118 QRAKEKNENEVESTSCASEDMPVEKILEAEQAVEPKTETYIETNLSVPSNSPNDPVTNIC 177
Query: 169 SLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + +A +IP FS+L +DQ +L ++ EL
Sbjct: 178 QAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELL 217
>gi|149723860|ref|XP_001500679.1| PREDICTED: thyroid hormone receptor alpha-like isoform 1 [Equus
caballus]
Length = 520
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 143/304 (47%), Gaps = 24/304 (7%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG--SKYVCLADKACPVDKRR 91
P+ + C VCGD A HY TCEGCKGFF+RT+QK Y C D C +DK
Sbjct: 44 PSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKIT 103
Query: 92 RNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREP 151
RN+CQ CRF+KC+ VGM ++V DS + + +L + + + +I +L + P
Sbjct: 104 RNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKE-----EMIRSLQQRP 158
Query: 152 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYRE 211
P PE+ + L+ + + R + + K+ ++ L
Sbjct: 159 EPT------PEE----WDLIHVATEAHRSTNAQGSHW----KQRRKFLPDDIGQSPIVSM 204
Query: 212 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVL 271
P+ + + E +F ++T ++ + FA K+P FS+L EDQ +L + +E+ L
Sbjct: 205 PDGDKVDL---EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSL 261
Query: 272 RLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
R A R E L + ++++Q + +AI E +SL +D + A L A
Sbjct: 262 RAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQA 321
Query: 332 LTLI 335
+ L+
Sbjct: 322 VLLM 325
>gi|114052506|ref|NP_001039794.1| thyroid hormone receptor alpha [Bos taurus]
gi|92096602|gb|AAI14726.1| Thyroid hormone receptor, alpha (erythroblastic leukemia viral
(v-erb-a) oncogene homolog, avian) [Bos taurus]
gi|296476351|tpg|DAA18466.1| TPA: thyroid hormone receptor, alpha [Bos taurus]
gi|440904252|gb|ELR54791.1| Thyroid hormone receptor alpha [Bos grunniens mutus]
Length = 511
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 150/331 (45%), Gaps = 24/331 (7%)
Query: 7 SSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGF 66
SS+ SP + S P+ + C VCGD A HY TCEGCKGF
Sbjct: 17 SSTRSPDGKRKRKNGQCSLKTSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGF 76
Query: 67 FKRTVQKG--SKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGR 124
F+RT+QK Y C D C +DK RN+CQ CRF+KC+ VGM ++V DS + + +
Sbjct: 77 FRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRK 136
Query: 125 LPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 184
L + + + +I +L + P P PE+ + L+ + + R +
Sbjct: 137 LIEQNRERRRKE-----EMIRSLQQRPEPT------PEE----WDLIHVATEAHRSTNAQ 181
Query: 185 IPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 244
+ K + + QS + + + LE +F ++T ++ + FA
Sbjct: 182 GSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEA-------FSEFTKIITPAITRVVDFAK 234
Query: 245 KIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDD 304
K+P FS+L EDQ +L + +E+ LR A R E L + ++++Q +
Sbjct: 235 KLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGV 294
Query: 305 WLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+AI E +SL +D + A L A+ L+
Sbjct: 295 VSDAIFELGKSLSAFNLDDTEVALLQAVLLM 325
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,231,024,297
Number of Sequences: 23463169
Number of extensions: 218658082
Number of successful extensions: 999626
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7768
Number of HSP's successfully gapped in prelim test: 515
Number of HSP's that attempted gapping in prelim test: 978583
Number of HSP's gapped (non-prelim): 15960
length of query: 335
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 192
effective length of database: 9,003,962,200
effective search space: 1728760742400
effective search space used: 1728760742400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)