BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2636
(335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PDU|A Chain A, Ligand-Binding Domain Of Drosophila Orphan Nuclear
Receptor Dhr38
pdb|1PDU|B Chain B, Ligand-Binding Domain Of Drosophila Orphan Nuclear
Receptor Dhr38
Length = 244
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 88/120 (73%), Positives = 102/120 (85%), Gaps = 1/120 (0%)
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
E ++E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRLAY
Sbjct: 40 EQSMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAY 99
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R R +DTKLIFCNG VL + QC RSFG +WLN I+EF +SLH +EIDISAFACLCALTLI
Sbjct: 100 RARIDDTKLIFCNGTVLHRTQCLRSFG-EWLNDIMEFSRSLHNLEIDISAFACLCALTLI 158
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 55/79 (69%), Gaps = 13/79 (16%)
Query: 143 LITALYRE-----PNPL--------EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 189
LITAL R P+P E ++E +K+QQFY LLT+SVDVI+ FA+KIPG+
Sbjct: 15 LITALVRSHVDTTPDPSCLDYSHYEEQSMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYF 74
Query: 190 DLCKEDQELLFQSASLELF 208
DL EDQELLFQSASLELF
Sbjct: 75 DLLPEDQELLFQSASLELF 93
>pdb|1OVL|A Chain A, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|D Chain D, Crystal Structure Of Nurr1 Lbd
Length = 271
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 72 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 131
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L IDISAF+C+ AL +
Sbjct: 132 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNXNIDISAFSCIAALAXV 185
>pdb|1OVL|B Chain B, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|C Chain C, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|E Chain E, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|F Chain F, Crystal Structure Of Nurr1 Lbd
Length = 271
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 88/115 (76%), Gaps = 1/115 (0%)
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ + IQQFY LLT S ++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+
Sbjct: 72 DTQHIQQFYDLLTGSXEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPV 131
Query: 281 DTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ KLIFCNGVVL + QC R FG +W+++I+EF +L IDISAF+C+ AL +
Sbjct: 132 EGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNXNIDISAFSCIAALAXV 185
>pdb|2QW4|A Chain A, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|B Chain B, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|C Chain C, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|D Chain D, Human Nr4a1 Ligand-Binding Domain
Length = 273
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 113/184 (61%), Gaps = 23/184 (12%)
Query: 152 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYRE 211
P +PP A P +LLT+ ++R D P + L FQ L F +E
Sbjct: 27 KPKQPPDASPA------NLLTS---LVRAHLDSGPSTAKLDYSK----FQELVLPHFGKE 73
Query: 212 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVL 271
+ +QQFY LL+ S++VIR +A+KIPGF++L DQ+LL +SA LELF+L
Sbjct: 74 ---------DAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFIL 124
Query: 272 RLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
RLAYR++ + KLIFC+G+VL + QC R FG DW+++IL F +SLH + +D+ AFACL A
Sbjct: 125 RLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDSILAFSRSLHSLLVDVPAFACLSA 183
Query: 332 LTLI 335
L LI
Sbjct: 184 LVLI 187
>pdb|1YJE|A Chain A, Crystal Structure Of The Rngfi-B Ligand-Binding Domain
Length = 264
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 111/182 (60%), Gaps = 23/182 (12%)
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
++PP A P +LLT+ +IR D P + L FQ L F +E
Sbjct: 20 MQPPDASPT------NLLTS---LIRAHLDSGPNTAKLDYSK----FQELVLPRFGKE-- 64
Query: 214 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
+ +QQFY LL+ S+DVIR +A+KIPGF +L DQ+LL +SA LELF+LRL
Sbjct: 65 -------DAGDVQQFYDLLSGSLDVIRKWAEKIPGFIELSPGDQDLLLESAFLELFILRL 117
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALT 333
AYR++ + KLIFC+G+VL + QC R FG DW++ IL F +SLH + +D+ AFACL AL
Sbjct: 118 AYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDNILAFSRSLHSLGVDVPAFACLSALV 176
Query: 334 LI 335
LI
Sbjct: 177 LI 178
>pdb|3V3E|B Chain B, Crystal Structure Of The Human Nur77 Ligand-Binding Domain
pdb|3V3E|A Chain A, Crystal Structure Of The Human Nur77 Ligand-Binding Domain
pdb|3V3Q|A Chain A, Crystal Structure Of Human Nur77 Ligand-Binding Domain In
Complex With Ethyl 2-[2,3,4
Trimethoxy-6(1-Octanoyl)phenyl]acetate
pdb|3V3Q|B Chain B, Crystal Structure Of Human Nur77 Ligand-Binding Domain In
Complex With Ethyl 2-[2,3,4
Trimethoxy-6(1-Octanoyl)phenyl]acetate
Length = 257
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 113/184 (61%), Gaps = 23/184 (12%)
Query: 152 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYRE 211
P +PP A P +LLT+ ++R D P + L FQ L F +E
Sbjct: 3 KPKQPPDASPA------NLLTS---LVRAHLDSGPSTAKLDYSK----FQELVLPHFGKE 49
Query: 212 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVL 271
+ +QQFY LL+ S++VIR +A+KIPGF++L DQ+LL +SA LELF+L
Sbjct: 50 ---------DAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFIL 100
Query: 272 RLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
RLAYR++ + KLIFC+G+VL + QC R FG DW+++IL F +SLH + +D+ AFACL A
Sbjct: 101 RLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDSILAFSRSLHSLLVDVPAFACLSA 159
Query: 332 LTLI 335
L LI
Sbjct: 160 LVLI 163
>pdb|1CIT|A Chain A, Dna-Binding Mechanism Of The Monomeric Orphan Nuclear
Receptor Ngfi-B
Length = 89
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 65/83 (78%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXXXX 102
CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVD
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 62
Query: 103 CLQVGMVKEVVRTDSLKGRRGRL 125
CL VGMVKEVVRTDSLKGRRGRL
Sbjct: 63 CLAVGMVKEVVRTDSLKGRRGRL 85
>pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 123/295 (41%), Gaps = 53/295 (17%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXX 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +D
Sbjct: 138 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 197
Query: 101 XXCLQVGMVKEVVRTDSLKGRRGRLXXXXXXXXXXXXXXXXXLITALYREPNPLEPPIAE 160
CL +GM +E V+ + +RG+ R N +E +
Sbjct: 198 QKCLAMGMKREAVQEER---QRGK-----------------------DRNENEVESTSSA 231
Query: 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIA 220
E + V+ I ++L E + + A++ L PN I
Sbjct: 232 NEDM---------PVERILE--------AELAVEPKTETYVEANMGLNPSSPNDPVTNIC 274
Query: 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE 280
+ Q F + +A +IP FS+L +DQ +L ++ EL + ++R+ A
Sbjct: 275 QAADKQLF---------TLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV 325
Query: 281 DTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ G+ + + + G + + E + M++D + CL A+ L
Sbjct: 326 KDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 380
>pdb|2A66|A Chain A, Human Liver Receptor Homologue Dna-Binding Domain (Hlrh-1
Dbd) In Complex With Dsdna From The Hcyp7a1 Promoter
Length = 113
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 48/85 (56%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXX 100
+LC VCGD + HYG+ TCE CKGFFKRTVQ +Y C+ ++ C +D
Sbjct: 10 ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRF 69
Query: 101 XXCLQVGMVKEVVRTDSLKGRRGRL 125
CL VGM E VR D ++G R +
Sbjct: 70 QKCLSVGMKLEAVRADRMRGGRNKF 94
>pdb|1LO1|A Chain A, Estrogen Related Receptor 2 Dna Binding Domain In Complex
With Dna
Length = 98
Score = 78.2 bits (191), Expect = 6e-15, Method: Composition-based stats.
Identities = 38/86 (44%), Positives = 49/86 (56%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXX 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C +
Sbjct: 3 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 62
Query: 99 XXXXCLQVGMVKEVVRTDSLKGRRGR 124
L+VGM+KE VR D ++G R +
Sbjct: 63 RFMKALKVGMLKEGVRLDRVRGGRQK 88
>pdb|2FF0|A Chain A, Solution Structure Of Steroidogenic Factor 1 Dna Binding
Domain Bound To Its Target Sequence In The Inhibin
Alpha- Subunit Promoter
Length = 102
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 46/85 (54%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXX 100
+LC VCGD + HYG+ TCE CKGFFKRTVQ Y C ++C +D
Sbjct: 2 ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRF 61
Query: 101 XXCLQVGMVKEVVRTDSLKGRRGRL 125
CL VGM E VR D ++G R +
Sbjct: 62 QKCLTVGMRLEAVRADRMRGGRNKF 86
>pdb|1YNW|B Chain B, Crystal Structure Of Vitamin D Receptor And 9-Cis Retinoic
Acid Receptor Dna-Binding Domains Bound To A Dr3
Response Element
Length = 99
Score = 75.5 bits (184), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXX 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +D
Sbjct: 4 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 63
Query: 101 XXCLQVGMVKEVVRTDSLKGR 121
CL +GM +E V+ + +G+
Sbjct: 64 QKCLAMGMKREAVQEERQRGK 84
>pdb|1DSZ|B Chain B, Structure Of The RxrRAR DNA-Binding Domain Heterodimer In
Complex With The Retinoic Acid Response Element Dr1
Length = 85
Score = 74.3 bits (181), Expect = 9e-14, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXX 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +D
Sbjct: 6 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 65
Query: 101 XXCLQVGMVKEVVRTDSLKG 120
CL +GM +E V+ + +G
Sbjct: 66 QKCLAMGMKREAVQEERQRG 85
>pdb|2EBL|A Chain A, Solution Structure Of The Zinc Finger, C4-type Domain Of
Human Coup Transcription Factor 1
Length = 89
Score = 72.8 bits (177), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 45/75 (60%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXXXX 102
C VCGD ++ +HYG TCEGCK FFKR+V++ Y C A++ CP+D
Sbjct: 10 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 69
Query: 103 CLQVGMVKEVVRTDS 117
CL+VGM +E V+ S
Sbjct: 70 CLKVGMRREAVQRGS 84
>pdb|2HAN|A Chain A, Structural Basis Of Heterodimeric Ecdysteroid Receptor
Interaction With Natural Response Element Hsp27 Gene
Promoter
Length = 93
Score = 72.4 bits (176), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXX 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C ++ C +D
Sbjct: 11 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRY 70
Query: 101 XXCLQVGMVKEVVRTD 116
CL GM +E V+ +
Sbjct: 71 QKCLTCGMKREAVQEE 86
>pdb|1R0N|A Chain A, Crystal Structure Of Heterodimeric Ecdsyone Receptor Dna
Binding Complex
Length = 81
Score = 72.4 bits (176), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 45/74 (60%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXX 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +D
Sbjct: 4 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 63
Query: 101 XXCLQVGMVKEVVR 114
CL +GM +E V+
Sbjct: 64 QKCLAMGMKREAVQ 77
>pdb|1BY4|A Chain A, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|B Chain B, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|C Chain C, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|D Chain D, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
Length = 82
Score = 72.4 bits (176), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 46/76 (60%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXX 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +D
Sbjct: 6 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 65
Query: 101 XXCLQVGMVKEVVRTD 116
CL +GM +E V+ +
Sbjct: 66 QKCLAMGMKREAVQEE 81
>pdb|1HCQ|A Chain A, The Crystal Structure Of The Estrogen Receptor Dna-Binding
Domain Bound To Dna: How Receptors Discriminate Between
Their Response Elements
pdb|1HCQ|B Chain B, The Crystal Structure Of The Estrogen Receptor Dna-Binding
Domain Bound To Dna: How Receptors Discriminate Between
Their Response Elements
pdb|1HCQ|E Chain E, The Crystal Structure Of The Estrogen Receptor Dna-Binding
Domain Bound To Dna: How Receptors Discriminate Between
Their Response Elements
pdb|1HCQ|F Chain F, The Crystal Structure Of The Estrogen Receptor Dna-Binding
Domain Bound To Dna: How Receptors Discriminate Between
Their Response Elements
Length = 84
Score = 72.4 bits (176), Expect = 4e-13, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXX 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +D
Sbjct: 4 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 63
Query: 100 XXXCLQVGMVKEVVRTDSLKGRRG 123
C +VGM+K +R D RRG
Sbjct: 64 LRKCYEVGMMKGGIRKD----RRG 83
>pdb|1DSZ|A Chain A, Structure Of The RxrRAR DNA-Binding Domain Heterodimer In
Complex With The Retinoic Acid Response Element Dr1
Length = 86
Score = 72.0 bits (175), Expect = 5e-13, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 46/86 (53%)
Query: 37 PSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXX 96
P + C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++
Sbjct: 1 PRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQ 60
Query: 97 XXXXXXCLQVGMVKEVVRTDSLKGRR 122
C +VGM KE VR D K ++
Sbjct: 61 YCRLQKCFEVGMSKESVRNDRNKKKK 86
>pdb|1R0O|A Chain A, Crystal Structure Of The Heterodimeric Ecdysone Receptor
Dna-Binding Complex
Length = 86
Score = 71.6 bits (174), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXX 100
LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C ++ C +D
Sbjct: 9 HLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRY 68
Query: 101 XXCLQVGMVKEVVRTD 116
CL GM +E V+ +
Sbjct: 69 QKCLTCGMKREAVQEE 84
>pdb|1RXR|A Chain A, High Resolution Solution Structure Of The Retinoid X
Receptor Dna Binding Domain, Nmr, 20 Structure
Length = 83
Score = 71.2 bits (173), Expect = 8e-13, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 47/80 (58%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXX 100
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +D
Sbjct: 4 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRY 63
Query: 101 XXCLQVGMVKEVVRTDSLKG 120
L +GM +E V+ + +G
Sbjct: 64 QKALAMGMKREAVQEERQRG 83
>pdb|1HRA|A Chain A, The Solution Structure Of The Human Retinoic Acid
Receptor- Beta Dna-Binding Domain
Length = 80
Score = 68.6 bits (166), Expect = 5e-12, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 42/78 (53%)
Query: 37 PSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXX 96
P + C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++
Sbjct: 2 PRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQ 61
Query: 97 XXXXXXCLQVGMVKEVVR 114
C +VGM KE VR
Sbjct: 62 YCRLQKCFEVGMSKESVR 79
>pdb|3CBB|A Chain A, Crystal Structure Of Hepatocyte Nuclear Factor 4alpha In
Complex With Dna: Diabetes Gene Product
pdb|3CBB|B Chain B, Crystal Structure Of Hepatocyte Nuclear Factor 4alpha In
Complex With Dna: Diabetes Gene Product
Length = 78
Score = 68.6 bits (166), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXXX 101
LCA+CGD A +HYG +C+GCKGFF+R+V+K Y C + C VD
Sbjct: 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLK 61
Query: 102 XCLQVGMVKEVVRTD 116
C + GM KE V+ +
Sbjct: 62 KCFRAGMKKEAVQNE 76
>pdb|1HCP|A Chain A, Dna Recognition By The Oestrogen Receptor: From Solution
To The Crystal
Length = 76
Score = 67.8 bits (164), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 41/71 (57%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXX 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +D
Sbjct: 4 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 63
Query: 100 XXXCLQVGMVK 110
C +VGM+K
Sbjct: 64 LRKCYEVGMMK 74
>pdb|1HLZ|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1HLZ|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|E Chain E, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|F Chain F, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1A6Y|A Chain A, Reverba Orphan Nuclear ReceptorDNA COMPLEX
pdb|1A6Y|B Chain B, Reverba Orphan Nuclear ReceptorDNA COMPLEX
Length = 94
Score = 67.4 bits (163), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDXXXXXXXXXXXX 100
LC VCGD+A+ HYGV CEGCKGFF+R++Q+ +Y CL ++ C +
Sbjct: 9 LCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRF 68
Query: 101 XXCLQVGMVKEVVRTDSLKGR 121
CL VGM ++ VR + R
Sbjct: 69 KKCLSVGMSRDAVRFGRIPKR 89
>pdb|4AA6|E Chain E, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
Length = 71
Score = 67.0 bits (162), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 41/71 (57%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXX 99
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +D
Sbjct: 1 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACR 60
Query: 100 XXXCLQVGMVK 110
C +VGM+K
Sbjct: 61 LRKCYEVGMMK 71
>pdb|2NLL|A Chain A, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element Dna
Length = 66
Score = 67.0 bits (162), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 40/66 (60%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXXXX 102
CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +D
Sbjct: 1 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQK 60
Query: 103 CLQVGM 108
CL +GM
Sbjct: 61 CLAMGM 66
>pdb|4AA6|A Chain A, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
pdb|4AA6|B Chain B, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
pdb|4AA6|F Chain F, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
Length = 71
Score = 66.6 bits (161), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 39/68 (57%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXXXX 102
CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +D
Sbjct: 4 CAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRK 63
Query: 103 CLQVGMVK 110
C +VGM+K
Sbjct: 64 CYEVGMMK 71
>pdb|1R0N|B Chain B, Crystal Structure Of Heterodimeric Ecdsyone Receptor Dna
Binding Complex
pdb|1R0O|B Chain B, Crystal Structure Of The Heterodimeric Ecdysone Receptor
Dna-Binding Complex
Length = 109
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 41/79 (51%)
Query: 35 TPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXX 94
P +LC VCGD A+ HY TCEGCKGFF+R+V K + Y C +AC +D
Sbjct: 1 APRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRK 60
Query: 95 XXXXXXXXCLQVGMVKEVV 113
CL VGM E V
Sbjct: 61 CQECRLKKCLAVGMRPECV 79
>pdb|2HAN|B Chain B, Structural Basis Of Heterodimeric Ecdysteroid Receptor
Interaction With Natural Response Element Hsp27 Gene
Promoter
Length = 119
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 41/79 (51%)
Query: 35 TPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXX 94
P +LC VCGD A+ HY TCEGCKGFF+R+V K + Y C +AC +D
Sbjct: 3 APRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRK 62
Query: 95 XXXXXXXXCLQVGMVKEVV 113
CL VGM E V
Sbjct: 63 CQECRLKKCLAVGMRPECV 81
>pdb|1YNW|A Chain A, Crystal Structure Of Vitamin D Receptor And 9-Cis Retinoic
Acid Receptor Dna-Binding Domains Bound To A Dr3
Response Element
Length = 110
Score = 63.5 bits (153), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXX 100
++C VCGD A H+ TCEGCKGFF+R++++ + + C A+ C +
Sbjct: 7 RICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCAANGDCRITKDNRRACQACRL 66
Query: 101 XXCLQVGMVKEVVRTDSLKGRR 122
C+ +GM+KE + TD R+
Sbjct: 67 KRCVDIGMMKEFILTDEEVQRK 88
>pdb|2NLL|B Chain B, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element Dna
Length = 103
Score = 63.2 bits (152), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG--SKYVCLADKACPVDXXXXXXXXXX 98
+LC VCGD A HY TCEGCKGFF+RT+QK Y C + C +D
Sbjct: 2 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQEC 61
Query: 99 XXXXCLQVGMVKEVVRTDSLKGRRGRL 125
C+ VGM ++V DS + + +L
Sbjct: 62 RFKKCIYVGMATDLVLDDSKRLAKRKL 88
>pdb|1Z5X|E Chain E, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 310
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 185 IPGFSDLCKEDQELLFQSASLELFYREPNPL-----------EPPIAEPEKIQQFYSLLT 233
+ G + E +EL+ + + Y P+P E +AE E+ + +
Sbjct: 68 VNGVKPITPEQEELIHRLVYFQNEYEHPSPEDIKRIVNAAPEEENVAE-ERFRHITEITI 126
Query: 234 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLE 293
+V +I F+ ++PGF L +EDQ L ++ S E+ + R+A R AE ++F
Sbjct: 127 LTVQLIVEFSKRLPGFDKLIREDQIALLKACSSEVMMFRMARRYDAETDSILFATNQPYT 186
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
++ + D + +L FC+ + M++D + +A L A+ +
Sbjct: 187 RESYTVAGMGDTVEDLLRFCRHMCAMKVDNAEYALLTAIVI 227
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 153 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P E +AE E+ + + +V +I F+ ++PGF L +EDQ L ++ S E+
Sbjct: 108 PEEENVAE-ERFRHITEITILTVQLIVEFSKRLPGFDKLIREDQIALLKACSSEVM 162
>pdb|1LAT|A Chain A, Glucocorticoid Receptor MutantDNA COMPLEX
pdb|1LAT|B Chain B, Glucocorticoid Receptor MutantDNA COMPLEX
Length = 82
Score = 62.0 bits (149), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 40/77 (51%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXX 98
P++ C VC D A+ HYGV TCEGCK FFKR V+ Y+C + C +D
Sbjct: 3 PARPCLVCSDEASGCHYGVLTCEGCKAFFKRAVEGQHNYLCKYEGKCIIDKIRRKNCPAC 62
Query: 99 XXXXCLQVGMVKEVVRT 115
CLQ GM E +T
Sbjct: 63 RYRKCLQAGMNLEARKT 79
>pdb|3M9E|A Chain A, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|B Chain B, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|E Chain E, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|F Chain F, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
Length = 105
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKG--SKYVCLADKACPVDXXXXXXX 95
+LC VCGD A HY TCEGCKGFF+RT+QK Y C + C +D
Sbjct: 1 GSDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQC 60
Query: 96 XXXXXXXCLQVGMVKEVVRTDS 117
C+ VGM ++V DS
Sbjct: 61 QECRFKKCIYVGMATDLVLDDS 82
>pdb|1KB2|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To Mouse
Osteopontin (Spp) Response Element
pdb|1KB2|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To Mouse
Osteopontin (Spp) Response Element
pdb|1KB4|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To A
Canonical Direct Repeat With Three Base Pair Spacer
(Dr3) Response Element
pdb|1KB4|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To A
Canonical Direct Repeat With Three Base Pair Spacer
(Dr3) Response Element
pdb|1KB6|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To Rat
Osteocalcin (Oc) Response Element
pdb|1KB6|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To Rat
Osteocalcin (Oc) Response Element
Length = 110
Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXX 100
++C VCGD A H+ TCEGCKGFF+R++++ + + C + C +
Sbjct: 7 RICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRL 66
Query: 101 XXCLQVGMVKEVVRTDSLKGRR 122
C+ +GM+KE + TD R+
Sbjct: 67 KRCVDIGMMKEFILTDEEVQRK 88
>pdb|1VJB|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1VJB|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1TFC|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|1TFC|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|2P7A|A Chain A, Crystal Structure Of Estrogen Related Receptor G In
Complex With 3-Methyl Phenol
pdb|2P7G|A Chain A, X-Ray Structure Of Estrogen Related Receptor G In Complex
With Bisphenol A.
pdb|2P7Z|A Chain A, Estrogen Related Receptor Gamma In Complex With 4-Hydroxy-
Tamoxifen
Length = 251
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 219 IAEPEKIQQF---------YSLLTTSVD-------VIRHFADKIPGFSDLCKEDQELLFQ 262
+AEPEKI LTT D VI +A IPGFS L DQ L Q
Sbjct: 36 VAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQ 95
Query: 263 SASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEID 322
SA +E+ +L + YR+ + + +L++ + ++++ Q + + D NAIL+ + M+++
Sbjct: 96 SAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLE 155
Query: 323 ISAFACLCALTL 334
F L A+ L
Sbjct: 156 KEEFVTLKAIAL 167
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 16/67 (23%)
Query: 158 IAEPEKIQQF---------YSLLTTSVD-------VIRHFADKIPGFSDLCKEDQELLFQ 201
+AEPEKI LTT D VI +A IPGFS L DQ L Q
Sbjct: 36 VAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQ 95
Query: 202 SASLELF 208
SA +E+
Sbjct: 96 SAWMEIL 102
>pdb|1S9Q|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
pdb|1S9Q|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
Length = 251
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 219 IAEPEKIQQF---------YSLLTTSVD-------VIRHFADKIPGFSDLCKEDQELLFQ 262
+AEPEKI LTT D VI +A IPGFS L DQ L Q
Sbjct: 36 VAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQ 95
Query: 263 SASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEID 322
SA +E+ +L + YR+ + + +L++ + ++++ Q + + D NAIL+ + M+++
Sbjct: 96 SAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLE 155
Query: 323 ISAFACLCALTL 334
F L A+ L
Sbjct: 156 KEEFVTLKAIAL 167
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 16/67 (23%)
Query: 158 IAEPEKIQQF---------YSLLTTSVD-------VIRHFADKIPGFSDLCKEDQELLFQ 201
+AEPEKI LTT D VI +A IPGFS L DQ L Q
Sbjct: 36 VAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQ 95
Query: 202 SASLELF 208
SA +E+
Sbjct: 96 SAWMEIL 102
>pdb|2E2R|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol A
pdb|2ZAS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With 4-Alpha-Cumylphenol,
A Bisphenol A Derivative
pdb|2ZBS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Apo Form
pdb|2ZKC|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol Z
Length = 244
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 219 IAEPEKIQQF---------YSLLTTSVD-------VIRHFADKIPGFSDLCKEDQELLFQ 262
+AEPEKI LTT D VI +A IPGFS L DQ L Q
Sbjct: 28 VAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQ 87
Query: 263 SASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEID 322
SA +E+ +L + YR+ + + +L++ + ++++ Q + + D NAIL+ + M+++
Sbjct: 88 SAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLE 147
Query: 323 ISAFACLCALTL 334
F L A+ L
Sbjct: 148 KEEFVTLKAIAL 159
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 16/67 (23%)
Query: 158 IAEPEKIQQF---------YSLLTTSVD-------VIRHFADKIPGFSDLCKEDQELLFQ 201
+AEPEKI LTT D VI +A IPGFS L DQ L Q
Sbjct: 28 VAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQ 87
Query: 202 SASLELF 208
SA +E+
Sbjct: 88 SAWMEIL 94
>pdb|4HN6|A Chain A, Gr Dna Binding Domain R460d/d462r - Tslp Ngre Complex
pdb|4HN6|B Chain B, Gr Dna Binding Domain R460d/d462r - Tslp Ngre Complex
Length = 114
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 39/78 (50%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXX 97
+P +LC VC D A+ HYGV TC CK FFKR V+ Y+C D C +D
Sbjct: 24 APPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGDNRCIIDKIRRKNCPA 83
Query: 98 XXXXXCLQVGMVKEVVRT 115
CLQ GM E +T
Sbjct: 84 CRYRKCLQAGMNLEARKT 101
>pdb|1KV6|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|1KV6|B Chain B, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|2GP7|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|C Chain C, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|D Chain D, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GPO|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Synthetic Peptide From Rip140
pdb|2GPP|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPP|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPU|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen
pdb|2GPV|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|B Chain B, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|C Chain C, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|D Chain D, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|E Chain E, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|F Chain F, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
Length = 230
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 219 IAEPEKIQQF---------YSLLTTSVD-------VIRHFADKIPGFSDLCKEDQELLFQ 262
+AEPEKI LTT D VI +A IPGFS L DQ L Q
Sbjct: 15 VAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQ 74
Query: 263 SASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEID 322
SA +E+ +L + YR+ + + +L++ + ++++ Q + + D NAIL+ + M+++
Sbjct: 75 SAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLE 134
Query: 323 ISAFACLCALTL 334
F L A+ L
Sbjct: 135 KEEFVTLKAIAL 146
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 16/67 (23%)
Query: 158 IAEPEKIQQF---------YSLLTTSVD-------VIRHFADKIPGFSDLCKEDQELLFQ 201
+AEPEKI LTT D VI +A IPGFS L DQ L Q
Sbjct: 15 VAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQ 74
Query: 202 SASLELF 208
SA +E+
Sbjct: 75 SAWMEIL 81
>pdb|1S9P|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|C Chain C, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|D Chain D, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
Length = 227
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 219 IAEPEKIQQF---------YSLLTTSVD-------VIRHFADKIPGFSDLCKEDQELLFQ 262
+AEPEKI LTT D VI +A IPGFS L DQ L Q
Sbjct: 12 VAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQ 71
Query: 263 SASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEID 322
SA +E+ +L + YR+ + + +L++ + ++++ Q + + D NAIL+ + M+++
Sbjct: 72 SAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLE 131
Query: 323 ISAFACLCALTL 334
F L A+ L
Sbjct: 132 KEEFVTLKAIAL 143
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 16/67 (23%)
Query: 158 IAEPEKIQQF---------YSLLTTSVD-------VIRHFADKIPGFSDLCKEDQELLFQ 201
+AEPEKI LTT D VI +A IPGFS L DQ L Q
Sbjct: 12 VAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQ 71
Query: 202 SASLELF 208
SA +E+
Sbjct: 72 SAWMEIL 78
>pdb|2EWP|A Chain A, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|B Chain B, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|C Chain C, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|D Chain D, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|E Chain E, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
Length = 226
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 219 IAEPEKIQQF---------YSLLTTSVD-------VIRHFADKIPGFSDLCKEDQELLFQ 262
+AEPEKI LTT D VI +A IPGFS L DQ L Q
Sbjct: 11 VAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQ 70
Query: 263 SASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEID 322
SA +E+ +L + YR+ + + +L++ + ++++ Q + + D NAIL+ + M+++
Sbjct: 71 SAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLE 130
Query: 323 ISAFACLCALTL 334
F L A+ L
Sbjct: 131 KEEFVTLKAIAL 142
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 16/67 (23%)
Query: 158 IAEPEKIQQF---------YSLLTTSVD-------VIRHFADKIPGFSDLCKEDQELLFQ 201
+AEPEKI LTT D VI +A IPGFS L DQ L Q
Sbjct: 11 VAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQ 70
Query: 202 SASLELF 208
SA +E+
Sbjct: 71 SAWMEIL 77
>pdb|3DZU|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 419
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 117/305 (38%), Gaps = 34/305 (11%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKY-VCLADKACPVDXXXXXXXXXXXXX 101
C VCGD A+ HYGV CEGCKGFF+RT++ Y C D C +
Sbjct: 53 CRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQ 110
Query: 102 XCLQVGMVKEVVRTDSLKGRRGRLXXXXXXXXXXXXXXXXXLITALYREPNPLEPPIAEP 161
CL VGM +R GR+ L+ + + + L P A+
Sbjct: 111 KCLAVGMSHNAIRF-------GRM----------PQAEKEKLLAEISSDIDQLNPESADL 153
Query: 162 EKI-QQFYSLLTTSVDVIRHFA-----DKIPGFSDLCKEDQELLFQSASLELFYREPNPL 215
+ + Y S + + A K S D L ++ ++ PL
Sbjct: 154 RALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGED-KIKFKHITPL 212
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIR---HFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
+ E I+ F SV+ ++ +A IPGF +L DQ L + E+
Sbjct: 213 QEQSKEV-AIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTM 271
Query: 273 LAYRTRAEDTKLIFCNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLC 330
LA + + G + + + ++ FG D++ EF + +E+D S A
Sbjct: 272 LASLMNKDGVLISEGQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFI 330
Query: 331 ALTLI 335
A+ ++
Sbjct: 331 AVIIL 335
>pdb|3G9P|B Chain B, Gr Dna Binding Domain:sgk 16bp Complex-7
pdb|3G9P|A Chain A, Gr Dna Binding Domain:sgk 16bp Complex-7
pdb|3FYL|A Chain A, Gr Dna Binding Domain:cgt Complex
pdb|3FYL|B Chain B, Gr Dna Binding Domain:cgt Complex
pdb|3G6P|A Chain A, Gr Dna Binding Domain:fkbp5 Complex, 18bp
pdb|3G6P|B Chain B, Gr Dna Binding Domain:fkbp5 Complex, 18bp
pdb|3G6Q|B Chain B, Gr Dna Binding Domain:fkbp5 Binding Site Complex-9
pdb|3G6Q|A Chain A, Gr Dna Binding Domain:fkbp5 Binding Site Complex-9
pdb|3G6R|B Chain B, Gr Dna Binding Domain:fkbp5 Complex-52, 18bp
pdb|3G6R|A Chain A, Gr Dna Binding Domain:fkbp5 Complex-52, 18bp
pdb|3G6U|A Chain A, Gr Dna-Binding Domain:fkbp5 16bp Complex-49
pdb|3G6U|B Chain B, Gr Dna-Binding Domain:fkbp5 16bp Complex-49
pdb|3G8U|A Chain A, Dna Binding Domain:gilz 16bp Complex-5
pdb|3G8U|B Chain B, Dna Binding Domain:gilz 16bp Complex-5
pdb|3G8X|A Chain A, Gr Dna Binding Domain:gilz 16bp Complex-65
pdb|3G8X|B Chain B, Gr Dna Binding Domain:gilz 16bp Complex-65
pdb|3G97|B Chain B, Gr Dna-Binding Domain:gilz 16bp Complex-9
pdb|3G97|A Chain A, Gr Dna-Binding Domain:gilz 16bp Complex-9
pdb|3G99|A Chain A, Gr Dna Binding Domain:pal Complex-9
pdb|3G99|B Chain B, Gr Dna Binding Domain:pal Complex-9
pdb|3G9I|A Chain A, Gr Dna Binding Domain: Pal Complex-35
pdb|3G9I|B Chain B, Gr Dna Binding Domain: Pal Complex-35
pdb|3G9J|A Chain A, Gr Dna Binding Domain:pal, 18bp Complex-36
pdb|3G9J|B Chain B, Gr Dna Binding Domain:pal, 18bp Complex-36
pdb|3G9M|A Chain A, Gr Dna-Binding Domain:sgk 16bp Complex-44
pdb|3G9M|B Chain B, Gr Dna-Binding Domain:sgk 16bp Complex-44
pdb|3G9O|B Chain B, Gr Dna-Binding Domain:sgk 16bp Complex-9
pdb|3G9O|A Chain A, Gr Dna-Binding Domain:sgk 16bp Complex-9
Length = 90
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 36/76 (47%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXX 99
S +C VC D A+ HYGV TC CK FFKR V+ Y+C C +D
Sbjct: 2 SHMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACR 61
Query: 100 XXXCLQVGMVKEVVRT 115
CLQ GM E +T
Sbjct: 62 YRKCLQAGMNLEARKT 77
>pdb|2NXX|E Chain E, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|F Chain F, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|G Chain G, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|H Chain H, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 248
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%)
Query: 235 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEK 294
+V +I FA ++PGF L +EDQ L ++ S E+ + R+A R + ++F N +
Sbjct: 64 TVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQTDSILFVNNQPYSR 123
Query: 295 QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + + +L FC++++ M +D + +A L A+ +
Sbjct: 124 DSYNLAGMGETIEDLLHFCRTMYSMRVDNAEYALLTAIVI 163
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 174 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+V +I FA ++PGF L +EDQ L ++ S E+
Sbjct: 64 TVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVM 98
>pdb|3L0E|A Chain A, X-Ray Crystal Structure Of A Potent Liver X Receptor
Modulator
Length = 253
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
A ++ F L SV I FA ++PGF L +EDQ L +++++E+ +L A R
Sbjct: 55 ARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNH 114
Query: 280 EDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
E + F K R+ +++N I EF +++ + +D + +A L A+ +
Sbjct: 115 ETESITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMSSLGLDDAEYALLIAINI 170
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYRE 211
A ++ F L SV I FA ++PGF L +EDQ L +++++E+ E
Sbjct: 55 ARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLE 107
>pdb|2C7A|A Chain A, Structure Of The Progesterone Receptor-Dna Complex
pdb|2C7A|B Chain B, Structure Of The Progesterone Receptor-Dna Complex
Length = 78
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 35/71 (49%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXX 98
P ++C +CGD A+ HYGV TC CK FFKR ++ Y+C C VD
Sbjct: 1 PQKICLICGDEASGCHYGVLTCGSCKVFFKRAMEGQHNYLCAGRNDCIVDKIRRKNCPAC 60
Query: 99 XXXXCLQVGMV 109
C Q GMV
Sbjct: 61 RLRKCCQAGMV 71
>pdb|1R4O|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1R4O|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1R4R|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 92
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 37/77 (48%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXX 98
P++ C VC D A+ HYGV TC CK FFKR V+ Y+C C +D
Sbjct: 3 PARPCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPAC 62
Query: 99 XXXXCLQVGMVKEVVRT 115
CLQ GM E +T
Sbjct: 63 RYRKCLQAGMNLEARKT 79
>pdb|4HN5|A Chain A, Gr Dna Binding Domain - Tslp Ngre Complex
pdb|4HN5|B Chain B, Gr Dna Binding Domain - Tslp Ngre Complex
Length = 117
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 38/78 (48%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXX 97
+P +LC VC D A+ HYGV TC CK FFKR V+ Y+C C +D
Sbjct: 27 APPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPA 86
Query: 98 XXXXXCLQVGMVKEVVRT 115
CLQ GM E +T
Sbjct: 87 CRYRKCLQAGMNLEARKT 104
>pdb|1R4R|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 92
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 37/77 (48%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXX 98
P++ C VC D A+ HYGV TC CK FFKR V+ Y+C C +D
Sbjct: 3 PARPCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPAC 62
Query: 99 XXXXCLQVGMVKEVVRT 115
CLQ GM E +T
Sbjct: 63 RYRKCLQAGMNLEARKT 79
>pdb|1GLU|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1GLU|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 81
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 37/77 (48%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXX 98
P++ C VC D A+ HYGV TC CK FFKR V+ Y+C C +D
Sbjct: 3 PARPCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPAC 62
Query: 99 XXXXCLQVGMVKEVVRT 115
CLQ GM E +T
Sbjct: 63 RYRKCLQAGMNLEARKT 79
>pdb|1UPV|A Chain A, Crystal Structure Of The Human Liver X Receptor Beta
Ligand Binding Domain In Complex With A Synthetic
Agonist
pdb|1UPW|A Chain A, Crystal Structure Of The Human Liver X Receptor Beta
Ligand Binding Domain In Complex With A Synthetic
Agonist
Length = 257
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
A ++ F L SV I FA ++PGF L +EDQ L +++++E+ +L A R
Sbjct: 59 ARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNH 118
Query: 280 EDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
E + F K R+ +++N I EF +++ + +D + +A L A+ +
Sbjct: 119 ETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINI 174
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYRE 211
A ++ F L SV I FA ++PGF L +EDQ L +++++E+ E
Sbjct: 59 ARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLE 111
>pdb|1PQ6|A Chain A, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|B Chain B, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|C Chain C, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|D Chain D, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ9|A Chain A, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|B Chain B, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|C Chain C, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|D Chain D, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQC|A Chain A, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|B Chain B, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|C Chain C, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|D Chain D, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|3KFC|A Chain A, Complex Structure Of Lxr With An Agonist
pdb|3KFC|B Chain B, Complex Structure Of Lxr With An Agonist
pdb|3KFC|C Chain C, Complex Structure Of Lxr With An Agonist
pdb|3KFC|D Chain D, Complex Structure Of Lxr With An Agonist
Length = 253
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
A ++ F L SV I FA ++PGF L +EDQ L +++++E+ +L A R
Sbjct: 55 ARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNH 114
Query: 280 EDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
E + F K R+ +++N I EF +++ + +D + +A L A+ +
Sbjct: 115 ETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINI 170
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYRE 211
A ++ F L SV I FA ++PGF L +EDQ L +++++E+ E
Sbjct: 55 ARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLE 107
>pdb|1P8D|A Chain A, X-Ray Crystal Structure Of Lxr Ligand Binding Domain With
24(S),25- Epoxycholesterol
pdb|1P8D|B Chain B, X-Ray Crystal Structure Of Lxr Ligand Binding Domain With
24(S),25- Epoxycholesterol
Length = 250
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
A ++ F L SV I FA ++PGF L +EDQ L +++++E+ +L A R
Sbjct: 52 ARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNH 111
Query: 280 EDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
E + F K R+ +++N I EF +++ + +D + +A L A+ +
Sbjct: 112 ETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINI 167
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYRE 211
A ++ F L SV I FA ++PGF L +EDQ L +++++E+ E
Sbjct: 52 ARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLE 104
>pdb|4DK8|A Chain A, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Partial Agonist 5
pdb|4DK8|C Chain C, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Partial Agonist 5
Length = 247
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
A ++ F L SV I FA ++PGF L +EDQ L +++++E+ +L A R
Sbjct: 49 ARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNH 108
Query: 280 EDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
E + F K R+ +++N I EF +++ + +D + +A L A+ +
Sbjct: 109 ETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINI 164
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYRE 211
A ++ F L SV I FA ++PGF L +EDQ L +++++E+ E
Sbjct: 49 ARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLE 101
>pdb|2ENV|A Chain A, Solution Sturcture Of The C4-Type Zinc Finger Domain From
Human Peroxisome Proliferator-Activated Receptor Delta
Length = 88
Score = 55.8 bits (133), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXXXX 102
C VCGD A+ HYGV CEGCKGFF+RT++ +Y +++C +
Sbjct: 10 CRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYE-KCERSCKIQKKNRNKCQYCRFQK 68
Query: 103 CLQVGMVKEVVRTDS 117
CL +GM +R S
Sbjct: 69 CLALGMSHNAIRFGS 83
>pdb|1XDK|B Chain B, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
pdb|1XDK|F Chain F, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 303
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E + F
Sbjct: 75 KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTF 134
Query: 287 CNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 135 SDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 183
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+F L T + I FA ++PGF+ L DQ L ++A L++
Sbjct: 75 KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL 117
>pdb|1R20|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO THE SYNTHETIC AGONIST
BYI06830
pdb|3IXP|D Chain D, Crystal Structure Of The Ecdysone Receptor Bound To
Byi08346
Length = 265
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 56/109 (51%)
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
+Q + +V +I FA +PGFS + + DQ L ++ S E+ +LR+A R A ++
Sbjct: 70 RQITEMTILTVQLIVEFAKGLPGFSKISQSDQITLLKACSSEVMMLRVARRYDAATDSVL 129
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
F N + +++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 130 FANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYSMMMDNVHYALLTAIVI 178
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 165 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+Q + +V +I FA +PGFS + + DQ L ++ S E+
Sbjct: 70 RQITEMTILTVQLIVEFAKGLPGFSKISQSDQITLLKACSSEVM 113
>pdb|1XAP|A Chain A, Structure Of The Ligand Binding Domain Of The Retinoic
Acid Receptor Beta
pdb|4DM6|A Chain A, Crystal Structure Of Rarb Lbd Homodimer In Complex With
Ttnpb
pdb|4DM6|B Chain B, Crystal Structure Of Rarb Lbd Homodimer In Complex With
Ttnpb
pdb|4DM8|A Chain A, Crystal Structure Of Rarb Lbd In Complex With 9cis
Retinoic Acid
pdb|4DM8|B Chain B, Crystal Structure Of Rarb Lbd In Complex With 9cis
Retinoic Acid
Length = 267
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E + F
Sbjct: 73 KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTF 132
Query: 287 CNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 133 SDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 181
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+F L T + I FA ++PGF+ L DQ L ++A L++
Sbjct: 73 KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDIL 115
>pdb|3G6T|A Chain A, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34
pdb|3G6T|B Chain B, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34
Length = 91
Score = 54.3 bits (129), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQ-KGSKYVCLADKACPVDXXXXXXXXXX 98
S +C VC D A+ HYGV TC CK FFKR V+ + Y+C C +D
Sbjct: 2 SHMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPAC 61
Query: 99 XXXXCLQVGMVKEVVRT 115
CLQ GM E +T
Sbjct: 62 RYRKCLQAGMNLEARKT 78
>pdb|3CQV|A Chain A, Crystal Structure Of Reverb Beta In Complex With Heme
Length = 199
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%)
Query: 215 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
++P + E ++F T +V + FA +IPGF DL + DQ L ++ + E+ +R A
Sbjct: 12 VDPHKSGHEIWEEFSXSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLXVRFA 71
Query: 275 YRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
A++ + F +G D LN+ EF + L+ +++ + A+ L
Sbjct: 72 SLFDAKERTVTFLSGKKYSVDDLHSXGAGDLLNSXFEFSEKLNALQLSDEEXSLFTAVVL 131
Query: 335 I 335
+
Sbjct: 132 V 132
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
++P + E ++F T +V + FA +IPGF DL + DQ L ++ + E+
Sbjct: 12 VDPHKSGHEIWEEFSXSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVL 66
>pdb|2GDA|A Chain A, Refined Solution Structure Of The Glucocorticoid Receptor
Dna-Binding Domain
Length = 72
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 32/67 (47%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXXX 101
LC VC D A+ HYGV TC CK FFKR V+ Y+C C +D
Sbjct: 1 LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYR 60
Query: 102 XCLQVGM 108
CLQ GM
Sbjct: 61 KCLQAGM 67
>pdb|1GDC|A Chain A, Refined Solution Structure Of The Glucocorticoid Receptor
Dna-Binding Domain
Length = 72
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 32/67 (47%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXXX 101
LC VC D A+ HYGV TC CK FFKR V+ Y+C C +D
Sbjct: 1 LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYR 60
Query: 102 XCLQVGM 108
CLQ GM
Sbjct: 61 KCLQAGM 67
>pdb|4DK7|A Chain A, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Full Agonist 1
pdb|4DK7|C Chain C, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Full Agonist 1
Length = 247
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRA 279
A ++ F L SV I FA ++PGF L +EDQ L +++++E+ +L A R
Sbjct: 49 ARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIXLLETARRYNH 108
Query: 280 EDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
E + F K R+ +++N I EF ++ + +D + +A L A+ +
Sbjct: 109 ETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAXRRLGLDDAEYALLIAINI 164
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 159 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
A ++ F L SV I FA ++PGF L +EDQ L +++++E+
Sbjct: 49 ARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEI 97
>pdb|2V7C|A Chain A, Crystal Structure Of Rev-Erb Beta
pdb|2V7C|B Chain B, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%)
Query: 215 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
++P + E ++F T +V + FA +IPGF DL + DQ L ++ + E+ +R A
Sbjct: 7 VDPHKSGHEIWEEFSXSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLXVRFA 66
Query: 275 YRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
A++ + F +G D LN+ EF + L+ +++ + A+ L
Sbjct: 67 SLFDAKERTVTFLSGKKYSVDDLHSXGAGDLLNSXFEFSEKLNALQLSDEEXSLFTAVVL 126
Query: 335 I 335
+
Sbjct: 127 V 127
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
++P + E ++F T +V + FA +IPGF DL + DQ L ++ + E+
Sbjct: 7 VDPHKSGHEIWEEFSXSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEV 60
>pdb|2LBD|A Chain A, Ligand-Binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To All-Trans Retinoic Acid
pdb|3LBD|A Chain A, Ligand-binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To 9-cis Retinoic Acid
pdb|4LBD|A Chain A, Ligand-binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To The Synthetic Agonist Bms961
Length = 267
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E + F
Sbjct: 73 KFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTF 132
Query: 287 CNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 133 SDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 181
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+F L T + I FA ++PGF+ L DQ L ++A L++
Sbjct: 73 KFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDIL 115
>pdb|1FCY|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The RarbetaGAMMA-
Selective Retinoid Cd564
Length = 236
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E + F
Sbjct: 48 KFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTF 107
Query: 287 CNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 108 SDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 156
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+F L T + I FA ++PGF+ L DQ L ++A L++
Sbjct: 48 KFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDIL 90
>pdb|1FCX|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Rargamma-Selective
Retinoid Bms184394
pdb|1FCZ|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Panagonist Retinoid
Bms181156
pdb|1FD0|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Rargamma-Selective
Retinoid Sr11254
Length = 235
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E + F
Sbjct: 47 KFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTF 106
Query: 287 CNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 107 SDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 155
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+F L T + I FA ++PGF+ L DQ L ++A L++
Sbjct: 47 KFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDIL 89
>pdb|1EXA|A Chain A, Enantiomer Discrimination Illustrated By Crystal
Structures Of The Human Retinoic Acid Receptor Hrargamma
Ligand Binding Domain: The Complex With The Active
R-Enantiomer Bms270394.
pdb|1EXX|A Chain A, Enantiomer Discrimination Illustrated By Crystal
Structures Of The Human Retinoic Acid Receptor Hrargamma
Ligand Binding Domain: The Complex With The Inactive
S-Enantiomer Bms270395
Length = 246
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E + F
Sbjct: 52 KFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTF 111
Query: 287 CNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 112 SDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 160
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+F L T + I FA ++PGF+ L DQ L ++A L++
Sbjct: 52 KFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDIL 94
>pdb|1R4I|A Chain A, Crystal Structure Of Androgen Receptor Dna-Binding Domain
Bound To A Direct Repeat Response Element
pdb|1R4I|B Chain B, Crystal Structure Of Androgen Receptor Dna-Binding Domain
Bound To A Direct Repeat Response Element
Length = 105
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXX 98
P + C +CGD A+ HYG TC CK FFKR + KY+C + C +D
Sbjct: 6 PQKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSC 65
Query: 99 XXXXCLQVGMV 109
C + GM
Sbjct: 66 RLRKCYEAGMT 76
>pdb|1R1K|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO PONASTERONE A
pdb|2R40|D Chain D, Crystal Structure Of 20e Bound Ecr/usp
Length = 266
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 56/109 (51%)
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
+Q + +V +I FA +PGF+ + + DQ L ++ S E+ +LR+A R A ++
Sbjct: 71 RQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVL 130
Query: 286 FCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
F N + +++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 131 FANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYSMMMDNVHYALLTAIVI 179
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 165 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+Q + +V +I FA +PGF+ + + DQ L ++ S E+
Sbjct: 71 RQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVM 114
>pdb|3FC6|B Chain B, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FC6|D Chain D, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FAL|B Chain B, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
pdb|3FAL|D Chain D, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 266
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 212 PNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 267
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++++E
Sbjct: 56 PWPIAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIE 115
Query: 268 LFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAF 326
+ +L + R + F ++ ++ +++N I EF ++++ ++++ + F
Sbjct: 116 VMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEF 175
Query: 327 ACLCALTL 334
A L A+++
Sbjct: 176 ALLIAISI 183
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 151 PNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++++E
Sbjct: 56 PWPIAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIE 115
Query: 207 LFYRE 211
+ E
Sbjct: 116 VMLLE 120
>pdb|3IPQ|A Chain A, X-Ray Structure Of Gw3965 Synthetic Agonist Bound To The
Lxr
pdb|3IPS|A Chain A, X-Ray Structure Of Benzisoxazole Synthetic Agonist Bound
To Alpha
pdb|3IPS|B Chain B, X-Ray Structure Of Benzisoxazole Synthetic Agonist Bound
To Alpha
pdb|3IPU|A Chain A, X-Ray Structure Of Benzisoxazole Urea Synthetic Agonist
Boun Lxr-Alpha
pdb|3IPU|B Chain B, X-Ray Structure Of Benzisoxazole Urea Synthetic Agonist
Boun Lxr-Alpha
Length = 283
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 212 PNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 267
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++++E
Sbjct: 73 PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIE 132
Query: 268 LFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAF 326
+ +L + R + F ++ ++ +++N I EF ++++ ++++ + F
Sbjct: 133 VMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEF 192
Query: 327 ACLCALTL 334
A L A+++
Sbjct: 193 ALLIAISI 200
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 151 PNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++++E
Sbjct: 73 PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIE 132
Query: 207 LFYRE 211
+ E
Sbjct: 133 VMLLE 137
>pdb|1UHL|B Chain B, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 242
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 212 PNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 267
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++++E
Sbjct: 32 PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIE 91
Query: 268 LFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAF 326
+ +L + R + F ++ ++ +++N I EF ++++ ++++ + F
Sbjct: 92 VMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEF 151
Query: 327 ACLCALTL 334
A L A+++
Sbjct: 152 ALLIAISI 159
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 151 PNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++++E
Sbjct: 32 PWPMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIE 91
Query: 207 LFYRE 211
+ E
Sbjct: 92 VMLLE 96
>pdb|2ACL|B Chain B, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|D Chain D, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|F Chain F, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|H Chain H, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
Length = 244
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 212 PNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 267
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++++E
Sbjct: 34 PWPIAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIE 93
Query: 268 LFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAF 326
+ +L + R + F ++ ++ +++N I EF ++++ ++++ + F
Sbjct: 94 VMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEF 153
Query: 327 ACLCALTL 334
A L A+++
Sbjct: 154 ALLIAISI 161
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 151 PNPLEPPIAEPEKIQQ----FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
P P+ P E QQ F L SV I FA ++PGF L +EDQ L +++++E
Sbjct: 34 PWPIAPDPQSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIE 93
Query: 207 LFYRE 211
+ E
Sbjct: 94 VMLLE 98
>pdb|1RGD|A Chain A, Structure Refinement Of The Glucocorticoid Receptor-Dna
Binding Domain From Nmr Data By Relaxation Matrix
Calculations
Length = 71
Score = 52.4 bits (124), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 31/66 (46%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDXXXXXXXXXXXXXX 102
C VC D A+ HYGV TC CK FFKR V+ Y+C C +D
Sbjct: 1 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRK 60
Query: 103 CLQVGM 108
CLQ GM
Sbjct: 61 CLQAGM 66
>pdb|2V0V|A Chain A, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|B Chain B, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|C Chain C, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|D Chain D, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 57/121 (47%)
Query: 215 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
++P + E ++F T +V + FA +IPGF DL + DQ L ++ + E+ ++R A
Sbjct: 7 VDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFA 66
Query: 275 YRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
A++ + F D LN++ EF + L+ +++ + A+ L
Sbjct: 67 SLFDAKERTVTFLGSKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVVL 126
Query: 335 I 335
+
Sbjct: 127 V 127
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 154 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
++P + E ++F T +V + FA +IPGF DL + DQ L ++ + E+
Sbjct: 7 VDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEV 60
>pdb|2H79|A Chain A, Crystal Structure Of Human Tr Alpha Bound T3 In
Orthorhombic Space Group
Length = 269
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E +F ++T ++ + FA K+P FS+L EDQ +L + +E+ LR A R E
Sbjct: 72 EAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPESD 131
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + ++++Q + +AI E +SL +D + A L A+ L+
Sbjct: 132 TLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLM 184
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E +F ++T ++ + FA K+P FS+L EDQ +L + +E+
Sbjct: 72 EAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIM 118
>pdb|3HZF|A Chain A, Structure Of Tr-alfa Bound To Selective Thyromimetic Gc-1
In C2 Space Group
Length = 269
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E +F ++T ++ + FA K+P FS+L EDQ +L + +E+ LR A R E
Sbjct: 72 EAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPESD 131
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + ++++Q + +AI E +SL +D + A L A+ L+
Sbjct: 132 TLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLM 184
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E +F ++T ++ + FA K+P FS+L EDQ +L + +E+
Sbjct: 72 EAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIM 118
>pdb|1UOM|A Chain A, The Structure Of Estrogen Receptor In Complex With A
Selective And Potent Tetrahydroisochiolin Ligand.
pdb|1XQC|A Chain A, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|B Chain B, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|C Chain C, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|D Chain D, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
Length = 254
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L +SA L
Sbjct: 27 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWL 85
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 86 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKSVEGMVEIFDMLLATSSRFRMMNLQGEE 145
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 146 FVCLKSIILL 155
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L +SA LE
Sbjct: 28 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWLE 86
Query: 207 LF 208
+
Sbjct: 87 IL 88
>pdb|3JZB|A Chain A, Crystal Structure Of Tr-Alfa Bound To The Selective
Thyromimetic Triac
pdb|3ILZ|A Chain A, Structure Of Tr-Alfa Bound To Selective Thyromimetic Gc-1
In Space Group
Length = 267
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E +F ++T ++ + FA K+P FS+L EDQ +L + +E+ LR A R E
Sbjct: 70 EAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPESD 129
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + ++++Q + +AI E +SL +D + A L A+ L+
Sbjct: 130 TLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLM 182
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E +F ++T ++ + FA K+P FS+L EDQ +L + +E+
Sbjct: 70 EAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIM 116
>pdb|3KMR|A Chain A, Crystal Structure Of Raralpha Ligand Binding Domain In
Complex With An Agonist Ligand (Am580) And A Coactivator
Fragment
pdb|3KMZ|B Chain B, Crystal Structure Of Raralpha Ligand Binding Domain In
Complex With The Inverse Agonist Bms493 And A
Corepressor Fragment
pdb|3KMZ|A Chain A, Crystal Structure Of Raralpha Ligand Binding Domain In
Complex With The Inverse Agonist Bms493 And A
Corepressor Fragment
Length = 266
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
+F L T + FA ++PGF+ L DQ L ++A L++ +LR+ R E + F
Sbjct: 72 KFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTF 131
Query: 287 CNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 132 SDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 180
>pdb|1QKT|A Chain A, Mutant Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|2AYR|A Chain A, A Serm Designed For The Treatment Of Uterine Leiomyoma
With Unique Tissue Specificity For Uterus And Ovaries In
Rats
pdb|2Q70|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complxed To
A Benzopyran Ligand
pdb|2Q70|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complxed To
A Benzopyran Ligand
pdb|2POG|A Chain A, Benzopyrans As Selective Estrogen Receptor B Agonists
(Serbas). Part 2: Structure Activity Relationship
Studies On The Benzopyran Scaffold.
pdb|2POG|B Chain B, Benzopyrans As Selective Estrogen Receptor B Agonists
(Serbas). Part 2: Structure Activity Relationship
Studies On The Benzopyran Scaffold.
pdb|2QE4|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Benzopyran Agonist
pdb|2QE4|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Benzopyran Agonist
pdb|2R6W|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
A Serm
pdb|2R6W|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
A Serm
pdb|2R6Y|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Serm
pdb|2R6Y|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Serm
Length = 248
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L +SA L
Sbjct: 23 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWL 81
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 82 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKSVEGMVEIFDMLLATSSRFRMMNLQGEE 141
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 142 FVCLKSIILL 151
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L +SA LE
Sbjct: 24 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWLE 82
Query: 207 LF 208
+
Sbjct: 83 IL 84
>pdb|2YAT|A Chain A, Crystal Structure Of Estradiol Derived Metal Chelate And
Estrogen Receptor-Ligand Binding Domain Complex
Length = 252
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L +SA L
Sbjct: 27 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWL 85
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 86 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKSVEGMVEIFDMLLATSSRFRMMNLQGEE 145
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 146 FVCLKSIILL 155
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L +SA LE
Sbjct: 28 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWLE 86
Query: 207 LF 208
+
Sbjct: 87 IL 88
>pdb|1PCG|A Chain A, Helix-Stabilized Cyclic Peptides As Selective Inhibitors
Of Steroid Receptor-Coactivator Interactions
pdb|1PCG|B Chain B, Helix-Stabilized Cyclic Peptides As Selective Inhibitors
Of Steroid Receptor-Coactivator Interactions
pdb|2I0J|A Chain A, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|B Chain B, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|C Chain C, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|D Chain D, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
Length = 244
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L +SA L
Sbjct: 23 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWL 81
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 82 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKSVEGMVEIFDMLLATSSRFRMMNLQGEE 141
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 142 FVCLKSIILL 151
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L +SA LE
Sbjct: 24 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWLE 82
Query: 207 LF 208
+
Sbjct: 83 IL 84
>pdb|4DQM|A Chain A, Revealing A Marine Natural Product As A Novel Agonist For
Retinoic Acid Receptors With A Unique Binding Mode And
Antitumor Activity
pdb|4DQM|C Chain C, Revealing A Marine Natural Product As A Novel Agonist For
Retinoic Acid Receptors With A Unique Binding Mode And
Antitumor Activity
Length = 234
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
+F L T + FA ++PGF+ L DQ L ++A L++ +LR+ R E + F
Sbjct: 46 KFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTF 105
Query: 287 CNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 106 SDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 154
>pdb|1DKF|B Chain B, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 235
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
+F L T + FA ++PGF+ L DQ L ++A L++ +LR+ R E + F
Sbjct: 46 KFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTF 105
Query: 287 CNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 106 SDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 154
>pdb|3OS8|A Chain A, Estrogen Receptor
pdb|3OS8|B Chain B, Estrogen Receptor
Length = 258
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL + DQ L + A L
Sbjct: 31 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTRHDQVHLLECAWL 89
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 90 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEE 149
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 150 FVCLKSIILL 159
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL + DQ L + A LE
Sbjct: 32 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTRHDQVHLLECAWLE 90
Query: 207 LF 208
+
Sbjct: 91 IL 92
>pdb|3A9E|B Chain B, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 269
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
+F L T + FA ++PGF+ L DQ L ++A L++ +LR+ R E + F
Sbjct: 75 KFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTF 134
Query: 287 CNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 135 SDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLI 183
>pdb|2OCF|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Estradiol And The E2#23 Fn3 Monobody
Length = 298
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 29 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWL 87
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 88 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEE 147
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 148 FVCLKSIILL 157
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 30 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLE 88
Query: 207 LF 208
+
Sbjct: 89 IL 90
>pdb|1NAV|A Chain A, Thyroid Receptor Alpha In Complex With An Agonist
Selective For Thyroid Receptor Beta1
Length = 263
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E +F ++T ++ + FA K+P FS+L EDQ +L + +E+ LR A R E
Sbjct: 68 EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESD 127
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + ++++Q + +AI E +SL +D + A L A+ L+
Sbjct: 128 TLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLM 180
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E +F ++T ++ + FA K+P FS+L EDQ +L + +E+
Sbjct: 68 EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIM 114
>pdb|3N00|A Chain A, Crystal Structure Of A Deletion Mutant Of Human Reverba
Ligand Binding Domain Bound With An Ncor Id1 Peptide
Determined To 2.60a
Length = 245
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E + F T +V + FA IPGF DL + DQ L ++ + E+ ++R A +D
Sbjct: 65 EIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQ 124
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
++F + Q+ D L+A+ +F + L+ + + A+ L+
Sbjct: 125 TVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEEELGLFTAVVLV 177
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E + F T +V + FA IPGF DL + DQ L ++ + E+
Sbjct: 65 EIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVL 111
>pdb|2H77|A Chain A, Crystal Structure Of Human Tr Alpha Bound T3 In Monoclinic
Space Group
Length = 269
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E +F ++T ++ + FA K+P FS+L EDQ +L + +E+ LR A R E
Sbjct: 72 EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESD 131
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + ++++Q + +AI E +SL +D + A L A+ L+
Sbjct: 132 TLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLM 184
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E +F ++T ++ + FA K+P FS+L EDQ +L + +E+
Sbjct: 72 EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIM 118
>pdb|3Q95|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Estriol
pdb|3Q97|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Two Isomers Of Ethoxy
Triphenylethylene
Length = 260
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 32 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWL 90
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 91 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEE 150
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 151 FVCLKSIILL 160
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 33 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLE 91
Query: 207 LF 208
+
Sbjct: 92 IL 93
>pdb|3UU7|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-A
pdb|3UUD|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Estradiol
Length = 251
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 25 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWL 83
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 84 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEE 143
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 144 FVCLKSIILL 153
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 26 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLE 84
Query: 207 LF 208
+
Sbjct: 85 IL 86
>pdb|3Q97|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Two Isomers Of Ethoxy
Triphenylethylene
Length = 260
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 32 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWL 90
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 91 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEE 150
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 151 FVCLKSIILL 160
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 33 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLE 91
Query: 207 LF 208
+
Sbjct: 92 IL 93
>pdb|1ZKY|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-3m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|1ZKY|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-3m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1V|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1V|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2FAI|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-2m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2FAI|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-2m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1Z|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17methyl-17alpha-Dihydroequilenin And A
Glucoc Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1Z|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17methyl-17alpha-Dihydroequilenin And A
Glucoc Interacting Protein 1 Nr Box Ii Peptide
pdb|2B23|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain And A
Glucocorticoid Receptor-Interacting Protein 1 Nr Box Ii
Peptide
pdb|2B23|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain And A
Glucocorticoid Receptor-Interacting Protein 1 Nr Box Ii
Peptide
pdb|2G44|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m-G And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2G44|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m-G And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2G5O|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 2- (But-1-Enyl)-17beta-Estradiol And A
Glucocorticoid Receptor Interacting Protein 1 Nr Box Ii
Peptide
pdb|2G5O|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 2- (But-1-Enyl)-17beta-Estradiol And A
Glucocorticoid Receptor Interacting Protein 1 Nr Box Ii
Peptide
Length = 257
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 29 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWL 87
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 88 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEE 147
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 148 FVCLKSIILL 157
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 30 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLE 88
Query: 207 LF 208
+
Sbjct: 89 IL 90
>pdb|3UU7|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-A
Length = 251
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 25 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWL 83
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 84 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEE 143
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 144 FVCLKSIILL 153
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 26 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLE 84
Query: 207 LF 208
+
Sbjct: 85 IL 86
>pdb|3HM1|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And Estrone
((8r,9s,13s,14s)-3-Hydroxy-
7,8,9,11,12,14,15,
16-Octahydro-6h-Cyclopenta[a]phenanthren-
pdb|3HM1|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And Estrone
((8r,9s,13s,14s)-3-Hydroxy-
7,8,9,11,12,14,15,
16-Octahydro-6h-Cyclopenta[a]phenanthren-
Length = 253
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 29 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWL 87
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 88 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEE 147
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 148 FVCLKSIILL 157
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 30 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLE 88
Query: 207 LF 208
+
Sbjct: 89 IL 90
>pdb|2JFA|B Chain B, Estrogen Receptor Alpha Lbd In Complex With An Affinity-
Selected Corepressor Peptide
pdb|2BJ4|B Chain B, Estrogen Receptor Alpha Lbd In Complex With A
Phage-Display Derived Peptide Antagonist
Length = 252
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 45 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 103
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 104 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEE 163
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 164 FVCLKSIILL 173
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 46 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 104
Query: 207 LF 208
+
Sbjct: 105 IL 106
>pdb|3OS8|C Chain C, Estrogen Receptor
pdb|3OS8|D Chain D, Estrogen Receptor
pdb|3OS9|A Chain A, Estrogen Receptor
pdb|3OS9|B Chain B, Estrogen Receptor
pdb|3OS9|C Chain C, Estrogen Receptor
pdb|3OS9|D Chain D, Estrogen Receptor
pdb|3OSA|A Chain A, Estrogen Receptor
pdb|3OSA|B Chain B, Estrogen Receptor
pdb|3OSA|C Chain C, Estrogen Receptor
pdb|3OSA|D Chain D, Estrogen Receptor
Length = 258
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL + DQ L + A L
Sbjct: 31 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTRHDQVHLLECAWL 89
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 90 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 149
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 150 FVCLKSIILL 159
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL + DQ L + A LE
Sbjct: 32 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTRHDQVHLLECAWLE 90
Query: 207 LF 208
+
Sbjct: 91 IL 92
>pdb|1L2I|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|1L2I|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
Length = 261
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 33 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 91
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 92 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEE 151
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 152 FVCLKSIILL 161
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 34 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 92
Query: 207 LF 208
+
Sbjct: 93 IL 94
>pdb|3UVV|A Chain A, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 265
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E +F ++T ++ + FA K+P FS+L EDQ +L + +E+ LR A R E
Sbjct: 68 EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 127
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + ++++Q + +AI + +SL +D + A L A+ L+
Sbjct: 128 TLTLSGEMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLM 180
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E +F ++T ++ + FA K+P FS+L EDQ +L + +E+
Sbjct: 68 EAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIM 114
>pdb|3D24|A Chain A, Crystal Structure Of Ligand-Binding Domain Of Estrogen-
Related Receptor Alpha (Erralpha) In Complex With The
Peroxisome Proliferators-Activated Receptor Coactivator-
1alpha Box3 Peptide (Pgc-1alpha)
pdb|3D24|C Chain C, Crystal Structure Of Ligand-Binding Domain Of Estrogen-
Related Receptor Alpha (Erralpha) In Complex With The
Peroxisome Proliferators-Activated Receptor Coactivator-
1alpha Box3 Peptide (Pgc-1alpha)
Length = 253
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
Query: 206 ELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 265
E Y P+P P P + L + V +A IPGFS L DQ + QS
Sbjct: 37 EKLYAMPDPAGPDGHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVW 95
Query: 266 LELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISA 325
+E+ VL +A R+ +L F +VL+++ + + + A+L+ + L + ++
Sbjct: 96 MEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREE 155
Query: 326 FACLCALTL 334
+ L AL L
Sbjct: 156 YVLLKALAL 164
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY P+P P P + L + V +A IPGFS L DQ + QS +E
Sbjct: 39 LYAMPDPAGPDGHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWME 97
Query: 207 LF 208
+
Sbjct: 98 VL 99
>pdb|2PJL|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Alpha
In Complex With A Synthetic Inverse Agonist Reveals Its
Novel Molecular Mechanism
pdb|2PJL|B Chain B, Crystal Structure Of Human Estrogen-Related Receptor Alpha
In Complex With A Synthetic Inverse Agonist Reveals Its
Novel Molecular Mechanism
Length = 247
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
Query: 206 ELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 265
E Y P+P P P + L + V +A IPGFS L DQ + QS
Sbjct: 31 EKLYAMPDPAGPDGHLP-AVATLSDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVW 89
Query: 266 LELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISA 325
+E+ VL +A R+ +L F +VL+++ + + + A+L+ + L + ++
Sbjct: 90 MEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREE 149
Query: 326 FACLCALTL 334
+ L AL L
Sbjct: 150 YVLLKALAL 158
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY P+P P P + L + V +A IPGFS L DQ + QS +E
Sbjct: 33 LYAMPDPAGPDGHLP-AVATLSDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWME 91
Query: 207 LF 208
+
Sbjct: 92 VL 93
>pdb|2QA8|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With Genistein
pdb|2QZO|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Way-169916
Length = 258
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 30 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWL 88
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 89 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 148
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 149 FVCLKSIILL 158
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 31 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLE 89
Query: 207 LF 208
+
Sbjct: 90 IL 91
>pdb|3Q95|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Estriol
Length = 260
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 32 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWL 90
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 91 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 150
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 151 FVCLKSIILL 160
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 33 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLE 91
Query: 207 LF 208
+
Sbjct: 92 IL 93
>pdb|2QZO|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Way-169916
Length = 258
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 30 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWL 88
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 89 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 148
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 149 FVCLKSIILL 158
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 31 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLE 89
Query: 207 LF 208
+
Sbjct: 90 IL 91
>pdb|1ERR|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
pdb|1ERR|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
Length = 253
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 26 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWL 84
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 85 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 144
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 145 FVCLKSIILL 154
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 27 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLE 85
Query: 207 LF 208
+
Sbjct: 86 IL 87
>pdb|3UUC|A Chain A, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|B Chain B, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|C Chain C, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|D Chain D, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
Length = 251
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 25 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWL 83
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 84 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 143
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 144 FVCLKSIILL 153
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 26 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLE 84
Query: 207 LF 208
+
Sbjct: 85 IL 86
>pdb|3UUA|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-Af
Length = 251
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 25 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWL 83
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 84 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 143
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 144 FVCLKSIILL 153
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 26 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLE 84
Query: 207 LF 208
+
Sbjct: 85 IL 86
>pdb|2BJ4|A Chain A, Estrogen Receptor Alpha Lbd In Complex With A
Phage-Display Derived Peptide Antagonist
pdb|2JF9|A Chain A, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JF9|B Chain B, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JF9|C Chain C, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JFA|A Chain A, Estrogen Receptor Alpha Lbd In Complex With An Affinity-
Selected Corepressor Peptide
Length = 252
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 45 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 103
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 104 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 163
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 164 FVCLKSIILL 173
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 46 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 104
Query: 207 LF 208
+
Sbjct: 105 IL 106
>pdb|3UUA|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-Af
pdb|3UUD|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Estradiol
Length = 251
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 25 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWL 83
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 84 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 143
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 144 FVCLKSIILL 153
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 26 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLE 84
Query: 207 LF 208
+
Sbjct: 85 IL 86
>pdb|1XB7|A Chain A, X-Ray Structure Of Erralpha Lbd In Complex With A Pgc-
1alpha Peptide At 2.5a Resolution
Length = 247
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
Query: 206 ELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 265
E Y P+P P P + L + V +A IPGFS L DQ + QS
Sbjct: 31 EKLYAMPDPAGPDGHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVW 89
Query: 266 LELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISA 325
+E+ VL +A R+ +L F +VL+++ + + + A+L+ + L + ++
Sbjct: 90 MEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREE 149
Query: 326 FACLCALTL 334
+ L AL L
Sbjct: 150 YVLLKALAL 158
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY P+P P P + L + V +A IPGFS L DQ + QS +E
Sbjct: 33 LYAMPDPAGPDGHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWME 91
Query: 207 LF 208
+
Sbjct: 92 VL 93
>pdb|3K6P|A Chain A, Estrogen Related Receptor Alpha In Complex With An Ether
Based Ligand
Length = 248
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
Query: 206 ELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 265
E Y P+P P P + L + V +A IPGFS L DQ + QS
Sbjct: 32 EKLYAMPDPAGPDGHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVW 90
Query: 266 LELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISA 325
+E+ VL +A R+ +L F +VL+++ + + + A+L+ + L + ++
Sbjct: 91 MEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREE 150
Query: 326 FACLCALTL 334
+ L AL L
Sbjct: 151 YVLLKALAL 159
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY P+P P P + L + V +A IPGFS L DQ + QS +E
Sbjct: 34 LYAMPDPAGPDGHLP-AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWME 92
Query: 207 LF 208
+
Sbjct: 93 VL 94
>pdb|3ERD|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERD|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERT|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 4- Hydroxytamoxifen
pdb|1R5K|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
pdb|1R5K|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
pdb|1R5K|C Chain C, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
Length = 261
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 33 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 91
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 92 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 151
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 152 FVCLKSIILL 161
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 34 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 92
Query: 207 LF 208
+
Sbjct: 93 IL 94
>pdb|2P15|A Chain A, Crystal Structure Of The Er Alpha Ligand Binding Domain
With The Agonist Ortho-Trifluoromethylphenylvinyl
Estradiol
pdb|2P15|B Chain B, Crystal Structure Of The Er Alpha Ligand Binding Domain
With The Agonist Ortho-Trifluoromethylphenylvinyl
Estradiol
pdb|2Q6J|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed To
A B-N Substituted Ligand
pdb|2Q6J|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Complexed To
A B-N Substituted Ligand
pdb|2QA6|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Mutant 537s
Complexed With
4-(6-Hydroxy-1h-Indazol-3-Yl)benzene-1,3-Diol
pdb|2QA6|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Mutant 537s
Complexed With
4-(6-Hydroxy-1h-Indazol-3-Yl)benzene-1,3-Diol
pdb|2QAB|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With An Ethyl
Indazole Compound
pdb|2QAB|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With An Ethyl
Indazole Compound
pdb|2QGT|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To An Ether Estradiol Compound
pdb|2QGT|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To An Ether Estradiol Compound
pdb|2QGW|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With A Chloro-Indazole Compound
pdb|2QGW|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With A Chloro-Indazole Compound
pdb|2QH6|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic
Diarylethylene Compound
pdb|2QH6|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic
Diarylethylene Compound
pdb|2QR9|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic Derivative
Compound
pdb|2QR9|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic Derivative
Compound
pdb|2QSE|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Burned Meat Compound
4-Oh-Phip
pdb|2QSE|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Burned Meat Compound
4-Oh-Phip
pdb|2QXM|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To Burned Meat Compound Phip
pdb|2QXM|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To Burned Meat Compound Phip
Length = 258
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 30 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 88
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 89 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 148
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 149 FVCLKSIILL 158
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 31 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 89
Query: 207 LF 208
+
Sbjct: 90 IL 91
>pdb|2IOK|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 1d
pdb|2IOK|B Chain B, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 1d
Length = 254
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 26 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 84
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 85 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 144
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 145 FVCLKSIILL 154
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 27 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 85
Query: 207 LF 208
+
Sbjct: 86 IL 87
>pdb|3DT3|A Chain A, Human Estrogen Receptor Alpha Lbd With Gw368
pdb|3DT3|B Chain B, Human Estrogen Receptor Alpha Lbd With Gw368
pdb|2YJA|B Chain B, Stapled Peptides Binding To Estrogen Receptor Alpha
Length = 255
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 30 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 88
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 89 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 148
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 149 FVCLKSIILL 158
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 31 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 89
Query: 207 LF 208
+
Sbjct: 90 IL 91
>pdb|1ERE|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|C Chain C, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|D Chain D, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|E Chain E, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|F Chain F, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|2OUZ|A Chain A, Crystal Structure Of Estrogen Receptor Alpha-Lasofoxifene
Complex
Length = 253
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 26 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 84
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 85 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 144
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 145 FVCLKSIILL 154
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 27 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 85
Query: 207 LF 208
+
Sbjct: 86 IL 87
>pdb|2IOG|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 11f
Length = 246
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 18 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 76
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 77 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 136
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 137 FVCLKSIILL 146
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 19 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 77
Query: 207 LF 208
+
Sbjct: 78 IL 79
>pdb|1A52|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
pdb|1A52|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
Length = 258
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 30 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 88
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 89 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 148
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 149 FVCLKSIILL 158
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 31 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 89
Query: 207 LF 208
+
Sbjct: 90 IL 91
>pdb|1X7E|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Way-244
pdb|1X7E|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Way-244
pdb|1X7R|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Genistein
Length = 245
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 22 ILYSEYDP-TRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 80
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 81 EILMIGLVWRSMEHPVKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 140
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 141 FVCLKSIILL 150
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 23 LYSEYDP-TRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 81
Query: 207 LF 208
+
Sbjct: 82 IL 83
>pdb|1SJ0|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With The Antagonist Ligand 4-d
pdb|1XP1|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 15
pdb|1XP6|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 16
pdb|1XP9|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 18
pdb|1XPC|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 19
pdb|1YIM|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 4
pdb|1YIN|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 3f
Length = 248
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 20 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 78
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 79 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 138
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 139 FVCLKSIILL 148
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 21 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 79
Query: 207 LF 208
+
Sbjct: 80 IL 81
>pdb|2QA8|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With Genistein
Length = 258
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 30 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 88
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 89 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 148
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 149 FVCLKSIILL 158
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 31 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 89
Query: 207 LF 208
+
Sbjct: 90 IL 91
>pdb|1GWQ|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
pdb|1GWQ|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
Length = 248
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 26 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 84
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 85 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 144
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 145 FVCLKSIILL 154
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 27 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 85
Query: 207 LF 208
+
Sbjct: 86 IL 87
>pdb|3HLV|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And
16-Alpha-Hydroxy-Estrone ((8s,9r,13
16r)-3,16-Dihydroxy-13-Methyl-7,8,9,11,12,14,15,
16-Octahyd Cyclopenta[a]phenanthren-17-One
pdb|3HLV|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And
16-Alpha-Hydroxy-Estrone ((8s,9r,13
16r)-3,16-Dihydroxy-13-Methyl-7,8,9,11,12,14,15,
16-Octahyd Cyclopenta[a]phenanthren-17-One
Length = 253
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 29 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 87
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 88 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 147
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 148 FVCLKSIILL 157
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 30 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 88
Query: 207 LF 208
+
Sbjct: 89 IL 90
>pdb|2QXS|A Chain A, Crystal Structure Of Antagonizing Mutant 536s Of The
Estrogen Receptor Alpha Ligand Binding Domain Complexed
To Raloxifene
pdb|2QXS|B Chain B, Crystal Structure Of Antagonizing Mutant 536s Of The
Estrogen Receptor Alpha Ligand Binding Domain Complexed
To Raloxifene
Length = 258
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 30 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 88
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 89 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 148
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 149 FVCLKSIILL 158
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 31 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 89
Query: 207 LF 208
+
Sbjct: 90 IL 91
>pdb|1QKU|A Chain A, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|B Chain B, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|C Chain C, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
Length = 250
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 26 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 84
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 85 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 144
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 145 FVCLKSIILL 154
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 27 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 85
Query: 207 LF 208
+
Sbjct: 86 IL 87
>pdb|1G50|A Chain A, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|B Chain B, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|C Chain C, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
Length = 247
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 23 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 81
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 82 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 141
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 142 FVCLKSIILL 151
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 24 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 82
Query: 207 LF 208
+
Sbjct: 83 IL 84
>pdb|3L03|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Binding Domain In Complex With A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide And
Estetrol (Estra-1,3,5(10)-Triene-3,15 Alpha,
16alpha,17beta-Tetrol)
pdb|3L03|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Binding Domain In Complex With A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide And
Estetrol (Estra-1,3,5(10)-Triene-3,15 Alpha,
16alpha,17beta-Tetrol)
Length = 253
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 29 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 87
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 88 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 147
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 148 FVCLKSIILL 157
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 30 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 88
Query: 207 LF 208
+
Sbjct: 89 IL 90
>pdb|1GWR|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
pdb|1GWR|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
Length = 245
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 22 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 80
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 81 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 140
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 141 FVCLKSIILL 150
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 23 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 81
Query: 207 LF 208
+
Sbjct: 82 IL 83
>pdb|4DMA|A Chain A, Crystal Structure Of Era Lbd In Complex With Ru100132
pdb|4DMA|B Chain B, Crystal Structure Of Era Lbd In Complex With Ru100132
Length = 247
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 207 LFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 266
+ Y E +P P +E + +L + + ++A ++PGF DL DQ L + A L
Sbjct: 24 ILYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWL 82
Query: 267 ELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISA 325
E+ ++ L +R+ KL+F ++L++ Q + G + + +L +M +
Sbjct: 83 EILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEE 142
Query: 326 FACLCALTLI 335
F CL ++ L+
Sbjct: 143 FVCLKSIILL 152
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY E +P P +E + +L + + ++A ++PGF DL DQ L + A LE
Sbjct: 25 LYSEYDPTRP-FSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLE 83
Query: 207 LF 208
+
Sbjct: 84 IL 85
>pdb|3L0L|A Chain A, Crystal Structure Of Orphan Nuclear Receptor Rorgamma In
Com Natural Ligand
pdb|3L0L|B Chain B, Crystal Structure Of Orphan Nuclear Receptor Rorgamma In
Com Natural Ligand
Length = 248
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 232 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVV 291
LT ++ + FA ++ GF +LC+ DQ +L ++ ++E+ ++R+ R D + +F G
Sbjct: 65 LTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMC-RAYNADNRTVFFEGKY 123
Query: 292 LEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ R+ G + +++I +F SL + A AL LI
Sbjct: 124 -GGMELFRALGCSELISSIFDFSHSLSALHFSEDEIALYTALVLI 167
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 171 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
LT ++ + FA ++ GF +LC+ DQ +L ++ ++E+
Sbjct: 65 LTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 101
>pdb|1N83|A Chain A, Crystal Structure Of The Complex Between The Orphan
Nuclear Hormone Receptor Ror(Alpha)-Lbd And Cholesterol
pdb|1S0X|A Chain A, Crystal Structure Of The Human Roralpha Ligand Binding
Domain In Complex With Cholesterol Sulfate At 2.2a
Length = 270
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 14/110 (12%)
Query: 232 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVV 291
+T ++ + FA +I GF +LC+ DQ +L ++ SLE+ +R+ RA D++ N V
Sbjct: 74 ITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMC---RAFDSQ---NNTVY 127
Query: 292 LEKQQCQ----RSFG-DDWLNAILEFCQSL---HLMEIDISAFACLCALT 333
+ + +S G +D+++ + EF +SL HL E +I+ F+ ++
Sbjct: 128 FDGKYASPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMS 177
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 171 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY 209
+T ++ + FA +I GF +LC+ DQ +L ++ SLE+ +
Sbjct: 74 ITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVF 112
>pdb|3KYT|A Chain A, Crystal Structure Of Orphan Nuclear Receptor Rorgamma In
Com Natural Ligand
pdb|3L0J|A Chain A, Crystal Structure Of Orphan Nuclear Receptor Rorgamma In
Com Natural Ligand
pdb|3B0W|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor
Ror(Gamma)t Ligand- Binding Domain In Complex With
Digoxin
pdb|3B0W|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor
Ror(Gamma)t Ligand- Binding Domain In Complex With
Digoxin
Length = 243
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 232 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVV 291
LT ++ + FA ++ GF +LC+ DQ +L ++ ++E+ ++R+ R D + +F G
Sbjct: 60 LTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMC-RAYNADNRTVFFEGKY 118
Query: 292 LEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ R+ G + +++I +F SL + A AL LI
Sbjct: 119 -GGMELFRALGCSELISSIFDFSHSLSALHFSEDEIALYTALVLI 162
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 171 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
LT ++ + FA ++ GF +LC+ DQ +L ++ ++E+
Sbjct: 60 LTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEV 96
>pdb|3JZC|A Chain A, Crystal Structure Of Tr-Beta Bound To The Selective
Thyromimetic Triac
Length = 263
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E F ++T ++ + FA K+P F +L EDQ +L + +E+ LR A R E
Sbjct: 69 EAFSHFTKIITPAITRVVDFAKKLPMFXELPXEDQIILLKGCCMEIMSLRAAVRYDPESE 128
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + + + Q + +AI + SL +D + A L A+ L+
Sbjct: 129 TLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 181
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E F ++T ++ + FA K+P F +L EDQ +L + +E+
Sbjct: 69 EAFSHFTKIITPAITRVVDFAKKLPMFXELPXEDQIILLKGCCMEIM 115
>pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FSDL EDQ +L ++ EL + ++R+ + ++ G+ + + +
Sbjct: 61 WAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAG 120
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D S CL A+ L
Sbjct: 121 VGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVL 154
>pdb|1N4H|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 259
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 173 TSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLL 232
T ++ R + I + C+ E L Q A Y E + E QQ +
Sbjct: 8 TMSEIDRIAQNIIKSHLETCQYTMEELHQLAWQTHTYEEIKAYQSKSREA-LWQQCAIQI 66
Query: 233 TTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVL 292
T ++ + FA +I GF +LC+ DQ LL +S LE+ ++R+ + ++F G
Sbjct: 67 THAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLF-EGKYG 125
Query: 293 EKQQCQRSFGDDWLNAILEFCQ---SLHLMEIDISAFA 327
Q + DD +N +F + SL L E +I+ F+
Sbjct: 126 GMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFS 163
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 171 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY----REPNPLEPPIAEPEK-- 224
+T ++ + FA +I GF +LC+ DQ LL +S LE+ R NPL + K
Sbjct: 66 ITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYG 125
Query: 225 -IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQEL-LFQSASL 266
+Q F +L S D++ D L ++E+ LF SA L
Sbjct: 126 GMQMFKAL--GSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVL 167
>pdb|1K4W|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Ror Beta
Ligand-Binding Domain In The Active Conformation
Length = 252
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 232 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVV 291
+T ++ + FA +I GF +LC+ DQ LL +S LE+ ++R+ + ++F G
Sbjct: 66 ITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLF-EGKY 124
Query: 292 LEKQQCQRSFGDDWLNAILEFCQ---SLHLMEIDISAFA 327
Q + DD +N +F + SL L E +I+ F+
Sbjct: 125 GGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFS 163
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 171 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY----REPNPLEPPIAEPEK-- 224
+T ++ + FA +I GF +LC+ DQ LL +S LE+ R NPL + K
Sbjct: 66 ITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYG 125
Query: 225 -IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQEL-LFQSASL 266
+Q F +L S D++ D L ++E+ LF SA L
Sbjct: 126 GMQMFKAL--GSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVL 167
>pdb|2J4A|A Chain A, Human Thyroid Hormone Receptor Beta Ligand Binding Domain
In Complex With Kb131084
Length = 253
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E F ++T ++ + FA K+P F +L EDQ +L + +E+ LR A R E
Sbjct: 59 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 118
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + + + Q + +AI + SL +D + A L A+ L+
Sbjct: 119 TLTLSGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 171
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E F ++T ++ + FA K+P F +L EDQ +L + +E+
Sbjct: 59 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 105
>pdb|1NQ2|A Chain A, Two Rth Mutants With Impaired Hormone Binding
Length = 264
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E F ++T ++ + FA K+P F +L EDQ +L + +E+ LR A R E
Sbjct: 70 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRTAVRYEPESE 129
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + + + Q + +AI + SL +D + A L A+ L+
Sbjct: 130 TLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 182
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E F ++T ++ + FA K+P F +L EDQ +L + +E+
Sbjct: 70 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 116
>pdb|1XZX|X Chain X, Thyroxine-Thyroid Hormone Receptor Interactions
pdb|1Y0X|X Chain X, Thyroxine-Thyroid Hormone Receptor Interactions
Length = 281
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E F ++T ++ + FA K+P F +L EDQ +L + +E+ LR A R E
Sbjct: 87 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 146
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + + + Q + +AI + SL +D + A L A+ L+
Sbjct: 147 TLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 199
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E F ++T ++ + FA K+P F +L EDQ +L + +E+
Sbjct: 87 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 133
>pdb|3GWS|X Chain X, Crystal Structure Of T3-Bound Thyroid Hormone Receptor
Length = 259
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E F ++T ++ + FA K+P F +L EDQ +L + +E+ LR A R E
Sbjct: 66 EAFSHFTKIITPAITRVVDFAKKLPMFXELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 125
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + + + Q + +AI + SL +D + A L A+ L+
Sbjct: 126 TLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 178
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E F ++T ++ + FA K+P F +L EDQ +L + +E+
Sbjct: 66 EAFSHFTKIITPAITRVVDFAKKLPMFXELPCEDQIILLKGCCMEIM 112
>pdb|1NQ7|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 244
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 232 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVV 291
+T ++ + FA +I GF +LC+ DQ LL +S LE+ ++R+ + ++F G
Sbjct: 59 ITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLF-EGKY 117
Query: 292 LEKQQCQRSFGDDWLNAILEFCQ---SLHLMEIDISAFA 327
Q + DD +N +F + SL L E +I+ F+
Sbjct: 118 GGMQMFKALGSDDLVNEAFDFAKNLCSLQLTEEEIALFS 156
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 171 LTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY----REPNPLEPPIAEPEK-- 224
+T ++ + FA +I GF +LC+ DQ LL +S LE+ R NPL + K
Sbjct: 59 ITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYG 118
Query: 225 -IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQEL-LFQSASL 266
+Q F +L S D++ D L ++E+ LF SA L
Sbjct: 119 GMQMFKAL--GSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVL 160
>pdb|3IMY|A Chain A, Structure Of Tr-Beta Bound To Selective Thyromimetic Gc-1
Length = 261
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E F ++T ++ + FA K+P F +L EDQ +L + +E+ LR A R E
Sbjct: 67 EAFSHFTKIITPAITRVVDFAKKLPMFXELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 126
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + + + Q + +AI + SL +D + A L A+ L+
Sbjct: 127 TLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 179
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E F ++T ++ + FA K+P F +L EDQ +L + +E+
Sbjct: 67 EAFSHFTKIITPAITRVVDFAKKLPMFXELPCEDQIILLKGCCMEIM 113
>pdb|1NAX|A Chain A, Thyroid Receptor Beta1 In Complex With A Beta-Selective
Ligand
Length = 252
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E F ++T ++ + FA K+P F +L EDQ +L + +E+ LR A R E
Sbjct: 59 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 118
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + + + Q + +AI + SL +D + A L A+ L+
Sbjct: 119 TLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 171
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E F ++T ++ + FA K+P F +L EDQ +L + +E+
Sbjct: 59 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 105
>pdb|1Q4X|A Chain A, Crystal Structure Of Human Thyroid Hormone Receptor Beta
Lbd In Complex With Specific Agonist Gc-24
Length = 253
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E F ++T ++ + FA K+P F +L EDQ +L + +E+ LR A R E
Sbjct: 59 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 118
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + + + Q + +AI + SL +D + A L A+ L+
Sbjct: 119 TLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 171
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E F ++T ++ + FA K+P F +L EDQ +L + +E+
Sbjct: 59 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 105
>pdb|1R6G|A Chain A, Crystal Structure Of The Thyroid Hormone Receptor Beta
Ligand Binding Domain In Complex With A Beta Selective
Compound
Length = 259
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E F ++T ++ + FA K+P F +L EDQ +L + +E+ LR A R E
Sbjct: 65 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 124
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + + + Q + +AI + SL +D + A L A+ L+
Sbjct: 125 TLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 177
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E F ++T ++ + FA K+P F +L EDQ +L + +E+
Sbjct: 65 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 111
>pdb|1N46|A Chain A, Crystal Structure Of Human Tr Beta Ligand-Binding Domain
Complexed With A Potent Subtype-Selective Thyromimetic
pdb|1N46|B Chain B, Crystal Structure Of Human Tr Beta Ligand-Binding Domain
Complexed With A Potent Subtype-Selective Thyromimetic
Length = 258
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E F ++T ++ + FA K+P F +L EDQ +L + +E+ LR A R E
Sbjct: 64 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 123
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + + + Q + +AI + SL +D + A L A+ L+
Sbjct: 124 TLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 176
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E F ++T ++ + FA K+P F +L EDQ +L + +E+
Sbjct: 64 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 110
>pdb|1NQ0|A Chain A, Tr Receptor Mutations Conferring Hormone Resistance And
Reduced Corepressor Release Exhibit Decreased Stability
In The Nterminal Lbd
Length = 263
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E F ++T ++ + FA K+P F +L EDQ +L + +E+ LR A R E
Sbjct: 69 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 128
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + + + Q + +AI + SL +D + A L A+ L+
Sbjct: 129 TLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 181
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E F ++T ++ + FA K+P F +L EDQ +L + +E+
Sbjct: 69 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 115
>pdb|1NQ1|A Chain A, Tr Receptor Mutations Conferring Hormone Resistance And
Reduced Corepressor Release Exhibit Decreased Stability
In The Nterminal Lbd
Length = 263
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E F ++T ++ + FA K+P F +L EDQ +L + +E+ LR A R E
Sbjct: 69 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 128
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + + + Q + +AI + SL +D + A L A+ L+
Sbjct: 129 TLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 181
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E F ++T ++ + FA K+P F +L EDQ +L + +E+
Sbjct: 69 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 115
>pdb|1BSX|A Chain A, Structure And Specificity Of Nuclear Receptor-Coactivator
Interactions
pdb|1BSX|B Chain B, Structure And Specificity Of Nuclear Receptor-Coactivator
Interactions
Length = 260
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E F ++T ++ + FA K+P F +L EDQ +L + +E+ LR A R E
Sbjct: 66 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 125
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + + + Q + +AI + SL +D + A L A+ L+
Sbjct: 126 TLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 178
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E F ++T ++ + FA K+P F +L EDQ +L + +E+
Sbjct: 66 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 112
>pdb|3D57|A Chain A, Tr Variant D355r
pdb|3D57|B Chain B, Tr Variant D355r
Length = 266
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E F ++T ++ + FA K+P F +L EDQ +L + +E+ LR A R E
Sbjct: 73 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 132
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + + + Q + +AI SL +D + A L A+ L+
Sbjct: 133 TLTLNGEMAVTRGQLKNGGLGVVSDAIFRLGMSLSSFNLDDTEVALLQAVLLM 185
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E F ++T ++ + FA K+P F +L EDQ +L + +E+
Sbjct: 73 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 119
>pdb|2PIN|A Chain A, Thyroid Receptor Beta In Complex With Inhibitor
pdb|2PIN|B Chain B, Thyroid Receptor Beta In Complex With Inhibitor
Length = 253
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E F ++T ++ + FA K+P F +L EDQ +L + +E+ LR A R E
Sbjct: 59 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESE 118
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + + + Q + +AI SL +D + A L A+ L+
Sbjct: 119 TLTLNGEMAVTRGQLKNGGLGVVSDAIFRLGMSLSSFNLDDTEVALLQAVLLM 171
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E F ++T ++ + FA K+P F +L EDQ +L + +E+
Sbjct: 59 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 105
>pdb|3P88|A Chain A, Fxr Bound To Isoquinolinecarboxylic Acid
Length = 229
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E + + T V V+ F K+PGF L EDQ L + +++E LR A +
Sbjct: 39 ENFEILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSA---EIFNK 95
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL + +LE++ D+++ + F +S+ +++ +A L A+ ++
Sbjct: 96 KLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVIL 148
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE-LFYR 210
E + + T V V+ F K+PGF L EDQ L + +++E +F R
Sbjct: 39 ENFEILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLR 88
>pdb|3GD2|A Chain A, Isoxazole Ligand Bound To Farnesoid X Receptor (Fxr)
Length = 229
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ T V V+ F K+PGF L EDQ L + +++E LR A + KL +
Sbjct: 47 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSA---EIFNKKLPSGHSD 103
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+LE++ D+++ + F +S+ +++ +A L A+ ++
Sbjct: 104 LLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVIL 148
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE-LFYR 210
+ T V V+ F K+PGF L EDQ L + +++E +F R
Sbjct: 47 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLR 88
>pdb|3HC6|A Chain A, Fxr With Src1 And Gsk088
Length = 232
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ T V V+ F K+PGF L EDQ L + +++E LR A + KL +
Sbjct: 50 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSA---EIFNKKLPSGHSD 106
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+LE++ D+++ + F +S+ +++ +A L A+ ++
Sbjct: 107 LLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVIL 151
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE-LFYR 210
+ T V V+ F K+PGF L EDQ L + +++E +F R
Sbjct: 50 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLR 91
>pdb|3L1B|A Chain A, Complex Structure Of Fxr Ligand-Binding Domain With A
Tetrahydroazepinoindole Compound
Length = 233
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ T V V+ F K+PGF L EDQ L + +++E LR A + KL +
Sbjct: 51 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSA---EIFNKKLPSGHSD 107
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+LE++ D+++ + F +S+ +++ +A L A+ ++
Sbjct: 108 LLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVIL 152
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY 209
+ T V V+ F K+PGF L EDQ L + +++E +
Sbjct: 51 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMF 90
>pdb|3HC5|A Chain A, Fxr With Src1 And Gsk826
pdb|3RVF|A Chain A, Fxr With Src1 And Gsk2034
Length = 232
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ T V V+ F K+PGF L EDQ L + +++E LR A + KL +
Sbjct: 50 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSA---EIFNKKLPSGHSD 106
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+LE++ D+++ + F +S+ +++ +A L A+ ++
Sbjct: 107 LLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVIL 151
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY 209
+ T V V+ F K+PGF L EDQ L + +++E +
Sbjct: 50 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMF 89
>pdb|3BEJ|A Chain A, Structure Of Human Fxr In Complex With Mfa-1 And Co-
Activator Peptide
pdb|3BEJ|B Chain B, Structure Of Human Fxr In Complex With Mfa-1 And Co-
Activator Peptide
Length = 238
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ T V V+ F K+PGF L EDQ L + +++E LR A + KL +
Sbjct: 56 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSA---EIFNKKLPSGHSD 112
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+LE++ D+++ + F +S+ +++ +A L A+ ++
Sbjct: 113 LLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVIL 157
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY 209
+ T V V+ F K+PGF L EDQ L + +++E +
Sbjct: 56 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMF 95
>pdb|1OSH|A Chain A, A Chemical, Genetic, And Structural Analysis Of The
Nuclear Bile Acid Receptor Fxr
Length = 232
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ T V V+ F K+PGF L EDQ L + +++E LR A + KL +
Sbjct: 50 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSA---EIFNKKLPSGHSD 106
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+LE++ D+++ + F +S+ +++ +A L A+ ++
Sbjct: 107 LLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVIL 151
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY 209
+ T V V+ F K+PGF L EDQ L + +++E +
Sbjct: 50 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMF 89
>pdb|3FLI|A Chain A, Discovery Of Xl335, A Highly Potent, Selective And Orally-
Active Agonist Of The Farnesoid X Receptor (Fxr)
Length = 231
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ T V V+ F K+PGF L EDQ L + +++E LR A + KL +
Sbjct: 49 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSA---EIFNKKLPSGHSD 105
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+LE++ D+++ + F +S+ +++ +A L A+ ++
Sbjct: 106 LLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVIL 150
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY 209
+ T V V+ F K+PGF L EDQ L + +++E +
Sbjct: 49 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMF 88
>pdb|3DCT|A Chain A, Fxr With Src1 And Gw4064
pdb|3DCU|A Chain A, Fxr With Src1 And Gsk8062
Length = 235
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ T V V+ F K+PGF L EDQ L + +++E LR A + KL +
Sbjct: 53 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSA---EIFNKKLPSGHSD 109
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+LE++ D+++ + F +S+ +++ +A L A+ ++
Sbjct: 110 LLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVIL 154
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY 209
+ T V V+ F K+PGF L EDQ L + +++E +
Sbjct: 53 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMF 92
>pdb|3P89|A Chain A, Fxr Bound To A Quinolinecarboxylic Acid
Length = 229
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ T V V+ F K+PGF L EDQ L + +++E LR A + KL +
Sbjct: 47 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSA---EIFNKKLPSGHSD 103
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+LE++ D+++ + F +S+ +++ +A L A+ ++
Sbjct: 104 LLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVIL 148
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE-LFYR 210
+ T V V+ F K+PGF L EDQ L + +++E +F R
Sbjct: 47 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLR 88
>pdb|3RUT|A Chain A, Fxr With Src1 And Gsk359
pdb|3RUU|A Chain A, Fxr With Src1 And Gsk237
Length = 229
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ T V V+ F K+PGF L EDQ L + +++E LR A + KL +
Sbjct: 47 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSA---EIFNKKLPSGHSD 103
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+LE++ D+++ + F +S+ +++ +A L A+ ++
Sbjct: 104 LLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVIL 148
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY 209
+ T V V+ F K+PGF L EDQ L + +++E +
Sbjct: 47 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMF 86
>pdb|2FSZ|A Chain A, A Second Binding Site For Hydroxytamoxifen Within The
Coactivator-Binding Groove Of Estrogen Receptor Beta
pdb|2FSZ|B Chain B, A Second Binding Site For Hydroxytamoxifen Within The
Coactivator-Binding Groove Of Estrogen Receptor Beta
Length = 246
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSF 301
+A KIPGF +L DQ L +S+ +E+ ++ L +R+ KLIF +VL++ + +
Sbjct: 56 WAKKIPGFVELSLFDQVRLLESSWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKSVE 115
Query: 302 G 302
G
Sbjct: 116 G 116
>pdb|1LBD|A Chain A, Ligand-Binding Domain Of The Human Nuclear Receptor
Rxr-Alpha
Length = 282
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + +
Sbjct: 102 WAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAG 161
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 162 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 195
>pdb|3FXV|A Chain A, Identification Of An N-Oxide Pyridine Gw4064 Analogue As A
Potent Fxr Agonist
pdb|3OKH|A Chain A, Crystal Structure Of Human Fxr In Complex With
2-(4-Chlorophenyl)-1-
[(1s)-1-Cyclohexyl-2-(Cyclohexylamino)-2-Oxoethyl]-1h-
Benzimidazole- 6-Carboxylic Acid
pdb|3OKI|A Chain A, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-1h-Benzimidazol-1-Yl]-N,
2-Dicyclohexylethanamide
pdb|3OKI|C Chain C, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-1h-Benzimidazol-1-Yl]-N,
2-Dicyclohexylethanamide
pdb|3OLF|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Methylbenzoic Acid
pdb|3OLF|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Methylbenzoic Acid
pdb|3OMK|A Chain A, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-5,
6-Difluoro-1h-Benzimidazol-1-Yl]-2-Cyclohexyl-N-(2-
Methylphenyl)ethanamide
pdb|3OMK|C Chain C, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-5,
6-Difluoro-1h-Benzimidazol-1-Yl]-2-Cyclohexyl-N-(2-
Methylphenyl)ethanamide
pdb|3OMM|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Fluorobenzoic Acid
pdb|3OMM|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Fluorobenzoic Acid
pdb|3OOF|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)benzoic Acid
pdb|3OOF|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)benzoic Acid
pdb|3OOK|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3,5-Difluorobenzoic Acid
pdb|3OOK|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3,5-Difluorobenzoic Acid
Length = 233
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ T V V+ F K+PGF L EDQ L + +++E LR A + KL +
Sbjct: 51 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSA---EIFNKKLPSGHSD 107
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+LE + D+++ + F +S+ +++ +A L A+ ++
Sbjct: 108 LLEARIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVIL 152
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY 209
+ T V V+ F K+PGF L EDQ L + +++E +
Sbjct: 51 MATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMF 90
>pdb|3E94|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Tributyltin And A Coactivator Fragment
pdb|3KWY|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Triphenyltin And A Coactivator Fragment
Length = 244
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + +
Sbjct: 64 WAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAG 123
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 124 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 157
>pdb|3UVV|B Chain B, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 244
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + +
Sbjct: 62 WAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAG 121
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 122 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 155
>pdb|3A9E|A Chain A, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 240
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + +
Sbjct: 60 WAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAG 119
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 120 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 153
>pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
Length = 239
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + +
Sbjct: 59 WAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAG 118
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 119 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 152
>pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides.
pdb|2ACL|A Chain A, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|C Chain C, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|E Chain E, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|G Chain G, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|3OZJ|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
pdb|3OZJ|C Chain C, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
Length = 238
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + +
Sbjct: 58 WAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAG 117
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 118 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 151
>pdb|1RDT|A Chain A, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
pdb|3FC6|A Chain A, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FC6|C Chain C, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FAL|A Chain A, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
pdb|3FAL|C Chain C, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 242
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + +
Sbjct: 62 WAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAG 121
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 122 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 155
>pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
Acid) And A Coactivator Peptide
pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Synthetic Agonist Compound Bms 649
And A Coactivator Peptide
pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|2P1T|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Methoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
pdb|2P1U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With 3-(2'-Ethoxy)-
Tetrahydronaphtyl Cinnamic Acid And A Fragment Of The
Coactivator Tif-2
pdb|2P1V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Propoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
pdb|3FUG|A Chain A, Crystal Structure Of The Retinoid X Receptor Ligand
Binding Domain Bound To The Synthetic Agonist
3-[4-Hydroxy-3-(3,5,
5,8,8-Pentamethyl-5,6,7,8-Tetrahydronaphthalen-2-Yl)-
Phenyl]acrylic Acid
pdb|2ZXZ|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|2ZY0|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|2ZY0|C Chain C, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|3NSP|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd
pdb|3NSP|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd
pdb|3NSQ|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
pdb|3NSQ|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
pdb|3R29|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
pdb|3R29|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
pdb|3R2A|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|C Chain C, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|D Chain D, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R5M|A Chain A, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
pdb|3R5M|C Chain C, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
Length = 240
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + +
Sbjct: 60 WAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAG 119
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 120 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 153
>pdb|1XV9|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XV9|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XVP|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
pdb|1XVP|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 236
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + +
Sbjct: 56 WAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAG 115
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 116 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 149
>pdb|1OT7|A Chain A, Structural Basis For 3-Deoxy-Cdca Binding And Activation
Of Fxr
pdb|1OT7|B Chain B, Structural Basis For 3-Deoxy-Cdca Binding And Activation
Of Fxr
Length = 229
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ T+ V ++ F ++PGF L EDQ L + +++E LR A + KL +
Sbjct: 48 MATSHVQILVEFTKRLPGFQTLDHEDQIALLKGSAVEAMFLRSA---EIFNKKLPAGHAD 104
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+LE++ + D+++ + F +S+ +++ +A L A+ ++
Sbjct: 105 LLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVIL 149
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY 209
+ T+ V ++ F ++PGF L EDQ L + +++E +
Sbjct: 48 MATSHVQILVEFTKRLPGFQTLDHEDQIALLKGSAVEAMF 87
>pdb|1XDK|A Chain A, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
pdb|1XDK|E Chain E, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 238
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + +
Sbjct: 58 WAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAG 117
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 118 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 151
>pdb|3PCU|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Ligand-Binding Domain Complexed With Lx0278 And Src1
Peptide
Length = 230
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + +
Sbjct: 54 WAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAG 113
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 114 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 147
>pdb|1OSV|A Chain A, Structural Basis For Bile Acid Binding And Activation Of
The Nuclear Receptor Fxr
pdb|1OSV|B Chain B, Structural Basis For Bile Acid Binding And Activation Of
The Nuclear Receptor Fxr
Length = 230
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
+ T+ V ++ F ++PGF L EDQ L + +++E LR A + KL +
Sbjct: 48 MATSHVQILVEFTKRLPGFQTLDHEDQIALLKGSAVEAMFLRSA---EIFNKKLPAGHAD 104
Query: 291 VLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+LE++ + D+++ + F +S+ +++ +A L A+ ++
Sbjct: 105 LLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVIL 149
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY 209
+ T+ V ++ F ++PGF L EDQ L + +++E +
Sbjct: 48 MATSHVQILVEFTKRLPGFQTLDHEDQIALLKGSAVEAMF 87
>pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI 285
+Q Y L+ +A IP F++L EDQ +L +S EL + ++R+ + ++
Sbjct: 75 RQLYQLI--------EWAKHIPHFTELPVEDQVILLKSGWNELLIAGFSHRSMSVKDGIM 126
Query: 286 FCNGVVLEKQ-QCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G+V+ + Q G + + E + M++D + CL ++ L
Sbjct: 127 LATGLVVHRNCAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIVL 176
>pdb|1NUO|A Chain A, Two Rth Mutants With Impaired Hormone Binding
Length = 261
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%)
Query: 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDT 282
E F ++T ++ + FA K+P F +L EDQ +L + +E+ L A R E
Sbjct: 67 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLHAAVRYDPESE 126
Query: 283 KLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
L + + + Q + +AI + SL +D + A L A+ L+
Sbjct: 127 TLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 179
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 162 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E F ++T ++ + FA K+P F +L EDQ +L + +E+
Sbjct: 67 EAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIM 113
>pdb|1XLS|A Chain A, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|B Chain B, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|C Chain C, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|D Chain D, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 232
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + +
Sbjct: 56 WAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAG 115
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 116 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 149
>pdb|3OAP|A Chain A, Crystal Structure Of Human Retinoid X Receptor
Alpha-Ligand Binding Domain Complex With 9-Cis Retinoic
Acid And The Coactivator Peptide Grip-1
Length = 231
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + +
Sbjct: 55 WAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAG 114
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 115 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 148
>pdb|3H0A|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
Length = 228
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + +
Sbjct: 55 WAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAG 114
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 115 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 148
>pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC-QRS 300
+A +IP FSDL +DQ +L ++ EL + ++R+ ++ +G+ + + Q
Sbjct: 46 WAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDVKDGILLASGLHVHRSSAHQAG 105
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 106 VGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVL 139
>pdb|1YY4|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
1-Chloro-6-(4-Hydroxy-Phenyl)-Naphthalen-2-Ol
pdb|1YY4|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
1-Chloro-6-(4-Hydroxy-Phenyl)-Naphthalen-2-Ol
pdb|1YYE|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-202196
pdb|1YYE|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-202196
Length = 268
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P E + L + + +A KIPGF +L DQ L +S +E+ ++ L +R+
Sbjct: 26 PFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRS 85
Query: 278 RAEDTKLIFCNGVVLEKQQ 296
KLIF +VL++ +
Sbjct: 86 IDHPGKLIFAPDLVLDRDE 104
>pdb|3P8X|A Chain A, Synthesis, Structure, And Biological Activity Of Des-Side
Chain Analogues Of 1alpha,25-Dihydroxyvitamin D3 With
Substituents At C-18
Length = 280
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
L++ S+ + FA IPGF DL EDQ +L +S+++E+ +LR
Sbjct: 86 LVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR 127
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
L++ S+ + FA IPGF DL EDQ +L +S+++E+ N
Sbjct: 86 LVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSN 129
>pdb|1L2J|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,
R)-5,11-Cis-Diethyl-5,6,11,12-Tetrahydrochrysene-2,
8-Diol
pdb|1L2J|B Chain B, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,
R)-5,11-Cis-Diethyl-5,6,11,12-Tetrahydrochrysene-2,
8-Diol
Length = 271
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P E + L + + +A KIPGF +L DQ L +S +E+ ++ L +R+
Sbjct: 54 PFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRS 113
Query: 278 RAEDTKLIFCNGVVLEKQQ 296
KLIF +VL++ +
Sbjct: 114 IDHPGKLIFAPDLVLDRDE 132
>pdb|3B0T|A Chain A, Human Vdr Ligand Binding Domain In Complex With
Maxacalcitol
Length = 254
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
L++ S+ + FA IPGF DL EDQ +L +S+++E+ +LR
Sbjct: 64 LVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR 105
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
L++ S+ + FA IPGF DL EDQ +L +S+++E+ N
Sbjct: 64 LVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSN 107
>pdb|3M7R|A Chain A, Crystal Structure Of Vdr H305q Mutant
Length = 253
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
L++ S+ + FA IPGF DL EDQ +L +S+++E+ +LR
Sbjct: 63 LVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR 104
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
L++ S+ + FA IPGF DL EDQ +L +S+++E+ N
Sbjct: 63 LVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSN 106
>pdb|3AZ1|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
pdb|3AZ2|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
pdb|3AZ3|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
Length = 253
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
L++ S+ + FA IPGF DL EDQ +L +S+++E+ +LR
Sbjct: 63 LVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR 104
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
L++ S+ + FA IPGF DL EDQ +L +S+++E+ N
Sbjct: 63 LVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSN 106
>pdb|1S0Z|A Chain A, Crystal Structure Of The Vdr Lbd Complexed To Seocalcitol.
pdb|1S19|A Chain A, Crystal Structure Of Vdr Ligand Binding Domain Complexed
To Calcipotriol.
pdb|1TXI|A Chain A, Crystal Structure Of The Vdr Ligand Binding Domain
Complexed To Tx522
pdb|2HAM|A Chain A, Crystal Structure Of Vdr Lbd Complexed To 2alpha-Propyl-
Calcitriol
pdb|2HAR|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2 Alpha-(3-
Hydroxy-1-Propoxy) Calcitriol
pdb|2HAS|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha-(1-
Propoxy) Calcitriol
pdb|2HB7|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha(3-
Hydroxy-1-Propyl) Calcitriol
pdb|2HB8|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha-Methyl
Calcitriol
pdb|3CS4|A Chain A, Structure-Based Design Of A Superagonist Ligand For The
Vitamin D Nuclear Receptor
pdb|3CS6|A Chain A, Structure-Based Design Of A Superagonist Ligand For The
Vitamin D Nuclear Receptor
pdb|3A3Z|X Chain X, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Synthetic Agonist Compound 2alpha-Methyl-
Amcr277a(C23s)
pdb|3A40|X Chain X, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Synthetic Agonist Compound 2alpha-Methyl-
Amcr277b(C23r)
pdb|3A78|A Chain A, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Natural Metabolite
1alpha,25-Dihydroxy-3-Epi-Vitamin D3
pdb|3AUQ|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With Yne-Diene Type Analog Of
Active 14-Epi-2alpha- Methyl-19-Norvitamin D3
pdb|3AUR|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With Yne-Diene Type Analog Of
Active 14-Epi-2beta- Methyl-19-Norvitamin D3
pdb|3AX8|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With
15alpha-Methoxy-1alpha,25-Dihydroxyvitamin D3
Length = 263
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
L++ S+ + FA IPGF DL EDQ +L +S+++E+ +LR
Sbjct: 69 LVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR 110
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
L++ S+ + FA IPGF DL EDQ +L +S+++E+ N
Sbjct: 69 LVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSN 112
>pdb|1DKF|A Chain A, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 233
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + +
Sbjct: 58 WAKRIPHFSELPLDDQVILLRAGWNELLIASASHRSIAVKDGILLATGLHVHRNSAHSAG 117
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 118 VGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVL 151
>pdb|3A2I|A Chain A, Crystal Structure Of The Human Vitamin D Receptor (H305f)
Ligand Binding Domain Complexed With Tei-9647
Length = 263
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
L++ S+ + FA IPGF DL EDQ +L +S+++E+ +LR
Sbjct: 69 LVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR 110
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
L++ S+ + FA IPGF DL EDQ +L +S+++E+ N
Sbjct: 69 LVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSN 112
>pdb|1DB1|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Complexed To Vitamin D
pdb|1IE8|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Ligand Binding Domain Bound To Kh1060
pdb|1IE9|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Ligand Binding Domain Bound To Mc1288
pdb|3OGT|A Chain A, Design, Chemical Synthesis, Functional Characterization
And Crystal Structure Of The Sidechain Analogue Of
1,25-Dihydroxyvitamin D3.
pdb|3KPZ|A Chain A, Crystal Structure Of A Novel Vitamin D3 Analogue, Zk203278
Showing Dissociated Profile
pdb|3TKC|A Chain A, Design, Synthesis, Evaluation And Structure Of Vitamin D
Analogues With Furan Side Chains
pdb|4G2I|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
Length = 259
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
L++ S+ + FA IPGF DL EDQ +L +S+++E+ +LR
Sbjct: 65 LVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR 106
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
L++ S+ + FA IPGF DL EDQ +L +S+++E+ N
Sbjct: 65 LVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSN 108
>pdb|3A2J|A Chain A, Crystal Structure Of The Human Vitamin D Receptor
(H305fH397F) LIGAND Binding Domain Complexed With
Tei-9647
Length = 263
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
L++ S+ + FA IPGF DL EDQ +L +S+++E+ +LR
Sbjct: 69 LVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLR 110
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
L++ S+ + FA IPGF DL EDQ +L +S+++E+ N
Sbjct: 69 LVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSN 112
>pdb|1QKM|A Chain A, Human Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Partial Agonist Genistein
Length = 255
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P E + L + + +A KIPGF +L DQ L +S +E+ ++ L +R+
Sbjct: 34 PFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRS 93
Query: 278 RAEDTKLIFCNGVVLEKQQ 296
KLIF +VL++ +
Sbjct: 94 IDHPGKLIFAPDLVLDRDE 112
>pdb|2I0G|A Chain A, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0G|B Chain B, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2JJ3|A Chain A, Estrogen Receptor Beta Ligand Binding Domain In Complex
With A Benzopyran Agonist
pdb|2JJ3|B Chain B, Estrogen Receptor Beta Ligand Binding Domain In Complex
With A Benzopyran Agonist
pdb|2Z4B|A Chain A, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2Z4B|B Chain B, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2QTU|A Chain A, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2QTU|B Chain B, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
Length = 257
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P E + L + + +A KIPGF +L DQ L +S +E+ ++ L +R+
Sbjct: 40 PFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRS 99
Query: 278 RAEDTKLIFCNGVVLEKQQ 296
KLIF +VL++ +
Sbjct: 100 IDHPGKLIFAPDLVLDRDE 118
>pdb|1X76|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-697
pdb|1X76|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-697
pdb|1X78|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-244
pdb|1X78|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-244
pdb|1X7B|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Erb-041
pdb|1X7B|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Erb-041
pdb|1X7J|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Genistein
pdb|1X7J|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Genistein
pdb|1U3Q|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|C Chain C, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|D Chain D, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3S|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-797
pdb|1U3S|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-797
pdb|3OLS|A Chain A, Crystal Structure Of Estrogen Receptor Beta Ligand Binding
Domain
pdb|3OLS|B Chain B, Crystal Structure Of Estrogen Receptor Beta Ligand Binding
Domain
pdb|3OMO|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMO|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMP|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMP|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMQ|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMQ|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|2YJD|A Chain A, Stapled Peptide Bound To Estrogen Receptor Beta
pdb|2YJD|B Chain B, Stapled Peptide Bound To Estrogen Receptor Beta
Length = 240
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P E + L + + +A KIPGF +L DQ L +S +E+ ++ L +R+
Sbjct: 28 PFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRS 87
Query: 278 RAEDTKLIFCNGVVLEKQQ 296
KLIF +VL++ +
Sbjct: 88 IDHPGKLIFAPDLVLDRDE 106
>pdb|3OLL|A Chain A, Crystal Structure Of Phosphorylated Estrogen Receptor Beta
Ligand Binding Domain
pdb|3OLL|B Chain B, Crystal Structure Of Phosphorylated Estrogen Receptor Beta
Ligand Binding Domain
Length = 240
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P E + L + + +A KIPGF +L DQ L +S +E+ ++ L +R+
Sbjct: 28 PFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRS 87
Query: 278 RAEDTKLIFCNGVVLEKQQ 296
KLIF +VL++ +
Sbjct: 88 IDHPGKLIFAPDLVLDRDE 106
>pdb|2NV7|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-555
pdb|2NV7|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-555
Length = 238
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ 296
+A KIPGF +L DQ L +S +E+ ++ L +R+ KLIF +VL++ +
Sbjct: 50 WAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 104
>pdb|1U9E|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-397
pdb|1U9E|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-397
pdb|1U3R|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-338
pdb|1U3R|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-338
Length = 241
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P E + L + + +A KIPGF +L DQ L +S +E+ ++ L +R+
Sbjct: 28 PFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRS 87
Query: 278 RAEDTKLIFCNGVVLEKQQ 296
KLIF +VL++ +
Sbjct: 88 IDHPGKLIFAPDLVLDRDE 106
>pdb|2GIU|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With Compound 45
Length = 241
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P E + L + + +A KIPGF +L DQ L +S +E+ ++ L +R+
Sbjct: 29 PFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRS 88
Query: 278 RAEDTKLIFCNGVVLEKQQ 296
KLIF +VL++ +
Sbjct: 89 IDHPGKLIFAPDLVLDRDE 107
>pdb|1ZAF|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
pdb|1ZAF|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
Length = 238
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ 296
+A KIPGF +L DQ L +S +E+ ++ L +R+ KLIF +VL++ +
Sbjct: 50 WAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 104
>pdb|2YLY|A Chain A, Sulfonamides As Selective Estrogen Receptor Beta Agonists.
pdb|2YLY|B Chain B, Sulfonamides As Selective Estrogen Receptor Beta Agonists
Length = 240
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P E + L + + +A KIPGF +L DQ L +S +E+ ++ L +R+
Sbjct: 29 PFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRS 88
Query: 278 RAEDTKLIFCNGVVLEKQQ 296
KLIF +VL++ +
Sbjct: 89 IDHPGKLIFAPDLVLDRDE 107
>pdb|1NDE|A Chain A, Estrogen Receptor Beta With Selective Triazine Modulator
Length = 255
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ 296
+A KIPGF +L DQ L +S +E+ ++ L +R+ KLIF +VL++ +
Sbjct: 66 WAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDE 120
>pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
Length = 258
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC-QRS 300
+A +IP FS L EDQ +L ++ EL + ++R+ ++ +G+ + + Q
Sbjct: 77 WAKRIPHFSSLPLEDQVILLRAGWNELLIASFSHRSIDVKDSILLASGLHVHRHSAHQAG 136
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M +D + CL A+ L
Sbjct: 137 VGPIFDRVLTELVSKMRDMMMDKTELGCLRAVVL 170
>pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Antagonist Raloxifene
pdb|1HJ1|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Pure Antioestrogen Ici164,384
Length = 255
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ 296
+A KIPGF +L DQ L +S +E+ ++ L +R+ KLIF +VL++ +
Sbjct: 58 WAKKIPGFVELSLLDQVRLLESCWMEVLMVGLMWRSIDHPGKLIFAPDLVLDRDE 112
>pdb|2J7X|A Chain A, Structure Of Estradiol-bound Estrogen Receptor Beta Lbd In
Complex With Lxxll Motif From Ncoa5
pdb|2J7Y|A Chain A, Structure Of 17-Epiestriol-Bound Estrogen Receptor Beta
Lbd In Complex With Lxxll Motif From Ncoa5
Length = 255
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ 296
+A KIPGF +L DQ L +S +E+ ++ L +R+ KLIF +VL++ +
Sbjct: 58 WAKKIPGFVELSLLDQVRLLESCWMEVLMVGLMWRSIDHPGKLIFAPDLVLDRDE 112
>pdb|1XIU|A Chain A, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
pdb|1XIU|B Chain B, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
Length = 230
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC-QRS 300
+A +IP F++L EDQ +L ++ EL + ++R+ ++ G+ + + Q
Sbjct: 50 WAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLATGLHVHRSSAHQAG 109
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M++D + CL A+ L
Sbjct: 110 VGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVL 143
>pdb|2HBH|A Chain A, Crystal Structure Of Vitamin D Nuclear Receptor Ligand
Binding Domain Bound To A Locked Side-Chain Analog Of
Calcitriol And Src-1 Peptide
pdb|2HC4|A Chain A, Crystal Structure Of The Lbd Of Vdr Of Danio Rerio In
Complex With Calcitriol
pdb|2HCD|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Vitamin D Nuclear Receptor In Complex With Gemini And A
Coactivator Peptide
pdb|3DR1|A Chain A, Side-Chain Fluorine Atoms Of Non-Steroidal Vitamin D3
Analogs Stabilize Helix 12 Of Vitamin D Receptor
pdb|3O1D|A Chain A, Structure-Function Study Of Gemini Derivatives With Two
Different Side Chains At C-20, Gemini-0072 And
Gemini-0097.
pdb|3O1E|A Chain A, Structure-Function Of Gemini Derivatives With Two
Different Side Chains At C-20, Gemini-0072 And
Gemini-0097
Length = 302
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
L++ S+ + FA IPGF DL EDQ L +S+++E+ +LR
Sbjct: 110 LVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLR 151
>pdb|4FHH|A Chain A, Development Of Synthetically Accessible Non-Secosteroidal
Hybrid Molecules Combining Vitamin D Receptor Agonism
And Histone Deacetylase Inhibition
pdb|4FHI|A Chain A, Development Of Synthetically Accessible Non-Secosteroidal
Hybrid Molecules Combining Vitamin D Receptor Agonism
And Histone Deacetylase Inhibition
pdb|4G1D|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G1Y|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G1Z|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G20|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G21|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G2H|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
Length = 300
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
L++ S+ + FA IPGF DL EDQ L +S+++E+ +LR
Sbjct: 108 LVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLR 149
>pdb|4FNE|A Chain A, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Doc Complex
pdb|4FN9|A Chain A, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Progesterone Complex
pdb|4FN9|B Chain B, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Progesterone Complex
Length = 254
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ L Q + + L + +R+ L F ++
Sbjct: 48 VSVVK-WAKALPGFRNLHLDDQMTLIQYSWMGLMAFAMGWRSYKHTNGQMLYFAPDLIFN 106
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+Q+ Q+S D + + Q +++ F C+ AL L+
Sbjct: 107 EQRMQQSAMYDLCQGMQQISQEFVRLQVTQEEFLCMKALLLL 148
>pdb|2ZL9|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZLA|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZLC|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZMH|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZMI|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZMJ|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZXM|A Chain A, A New Class Of Vitamin D Receptor Ligands That Induce
Structural Rearrangement Of The Ligand-Binding Pocket
pdb|2ZXN|A Chain A, A New Class Of Vitamin D Receptor Ligands That Induce
Structural Rearrangement Of The Ligand-Binding Pocket
pdb|3AFR|A Chain A, Crystal Structure Of
Vdr-Lbd22S-Butyl-1a,24r-Dihydroxyvitamin D3 Complex
pdb|3VJS|A Chain A, Vitamin D Receptor Complex With A Carborane Compound
pdb|3VJT|A Chain A, Vitamin D Receptor Complex With A Carborane Compound
pdb|3VRT|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Mehylidene-19,25,26,27-
Tetranor-1alpha,24-Dihydroxyvitamind3
pdb|3VRU|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Methylidene-19,24-Dinor- 1alpha,25-Dihydroxy Vitamind3
pdb|3VRV|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Methylidene-26,27-
Dimethyl-19,24-Dinor-1alpha,25-Dihydroxyvitamin D3
pdb|3VRW|A Chain A, Vdr Ligand Binding Domain In Complex With
22s-Butyl-2-Methylidene-26,
27-Dimethyl-19,24-Dinor-1alpha,25-Dihydroxyvitamin D3
Length = 271
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
L++ S+ + FA IPGF DL +DQ +L +S+++E+ +LR
Sbjct: 77 LVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLR 118
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
L++ S+ + FA IPGF DL +DQ +L +S+++E+ N
Sbjct: 77 LVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSN 120
>pdb|1RJK|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2md And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|1RK3|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 1,25-Dihydroxyvitamin D3
And A Synthetic Peptide Containing The Nr2 Box Of Drip
205
pdb|1RKG|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2mbisp And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|1RKH|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2am20r And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|2O4J|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Ligand Binding
Domain Complexed With Vitiii 17-20z And The Nr2 Box Of
Drip 205
pdb|2O4R|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Ligand Binding
Domain Complexed With Vitiii 17-20e And The Nr2 Box Of
Drip 205
Length = 292
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
L++ S+ + FA IPGF DL +DQ +L +S+++E+ +LR
Sbjct: 67 LVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLR 108
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
L++ S+ + FA IPGF DL +DQ +L +S+++E+ N
Sbjct: 67 LVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSN 110
>pdb|2ZFX|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Yr301 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|3A2H|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Tei-9647 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|3AUN|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Yr335 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
Length = 265
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 231 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLR 272
L++ S+ + FA IPGF DL +DQ +L +S+++E+ +LR
Sbjct: 71 LVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLR 112
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 170 LLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPN 213
L++ S+ + FA IPGF DL +DQ +L +S+++E+ N
Sbjct: 71 LVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSN 114
>pdb|2Q1H|A Chain A, Ancestral Corticoid Receptor In Complex With Aldosterone
pdb|2Q1V|A Chain A, Ancestral Corticoid Receptor In Complex With Cortisol
Length = 250
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ L Q + + L L +R+ L F ++
Sbjct: 44 VSVVK-WAKALPGFRNLHLDDQMTLIQYSWMSLMAFSLGWRSYKHTNGQMLYFAPDLIFN 102
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+++ Q+S D + + Q +++ F C+ L L+
Sbjct: 103 EERMQQSAMYDLCQGMRQISQEFVRLQVTYEEFLCMKVLLLL 144
>pdb|1NHZ|A Chain A, Crystal Structure Of The Antagonist Form Of Glucocorticoid
Receptor
pdb|1P93|A Chain A, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|B Chain B, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|C Chain C, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|D Chain D, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
Length = 280
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNG--VVLEKQQCQR 299
+A IPGF +L +DQ L Q + + L L +R+ + + + C +++ +Q+
Sbjct: 80 WAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTL 139
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
D +L LH +++ + C+ L L+
Sbjct: 140 PDMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLL 175
>pdb|2Q3Y|A Chain A, Ancestral Corticiod Receptor In Complex With Doc
Length = 249
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ L Q + + L L +R+ L F ++
Sbjct: 44 VSVVK-WAKALPGFRNLHLDDQMTLIQYSWMSLMAFSLGWRSYKHTNGQMLYFAPDLIFN 102
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+++ Q+S D + + Q +++ F C+ L L+
Sbjct: 103 EERMQQSAMYDLCQGMRQISQEFVRLQVTYEEFLCMKVLLLL 144
>pdb|3CLD|A Chain A, Ligand Binding Domain Of The Glucocorticoid Receptor
Complexed With Fluticazone Furoate
pdb|3CLD|B Chain B, Ligand Binding Domain Of The Glucocorticoid Receptor
Complexed With Fluticazone Furoate
pdb|3K23|A Chain A, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K23|B Chain B, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K23|C Chain C, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K22|A Chain A, Glucocorticoid Receptor With Bound Alaninamide 10 With
Tif2 Peptide
pdb|3K22|B Chain B, Glucocorticoid Receptor With Bound Alaninamide 10 With
Tif2 Peptide
Length = 259
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNG--VVLEKQQCQR 299
+A IPGF +L +DQ L Q + + L L +R+ + + + C +++ +Q+
Sbjct: 59 WAKAIPGFRNLHLDDQMTLLQYSWMYLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTL 118
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
D +L LH +++ + C+ L L+
Sbjct: 119 PGMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLL 154
>pdb|3E7C|A Chain A, Glucocorticoid Receptor Lbd Bound To Gsk866
pdb|3E7C|B Chain B, Glucocorticoid Receptor Lbd Bound To Gsk866
Length = 257
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNG--VVLEKQQCQR 299
+A IPGF +L +DQ L Q + + L L +R+ + + + C +++ +Q+
Sbjct: 57 WAKAIPGFRNLHLDDQMTLLQYSWMYLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTL 116
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
D +L LH +++ + C+ L L+
Sbjct: 117 PGMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLL 152
>pdb|2AA6|A Chain A, Mineralocorticoid Receptor S810l Mutant With Bound
Progesterone
pdb|2AA6|B Chain B, Mineralocorticoid Receptor S810l Mutant With Bound
Progesterone
pdb|2AAX|A Chain A, Mineralocorticoid Receptor Double Mutant With Bound
Cortisone
pdb|2AAX|B Chain B, Mineralocorticoid Receptor Double Mutant With Bound
Cortisone
pdb|2AB2|A Chain A, Mineralocorticoid Receptor Double Mutant With Bound
Spironolactone
pdb|2AB2|B Chain B, Mineralocorticoid Receptor Double Mutant With Bound
Spironolactone
Length = 275
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTK--LIFCNGVVLE 293
+ V++ +A +PGF +L EDQ L Q + + L L++R+ L F +V
Sbjct: 69 IQVVK-WAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFN 127
Query: 294 KQQCQRSFGDDWLNAILEFCQSLH 317
+++ +S A+ E CQ +H
Sbjct: 128 EEKMHQS-------AMYELCQGMH 144
>pdb|1M2Z|A Chain A, Crystal Structure Of A Dimer Complex Of The Human
Glucocorticoid Receptor Ligand-Binding Domain Bound To
Dexamethasone And A Tif2 Coactivator Motif
pdb|1M2Z|D Chain D, Crystal Structure Of A Dimer Complex Of The Human
Glucocorticoid Receptor Ligand-Binding Domain Bound To
Dexamethasone And A Tif2 Coactivator Motif
Length = 257
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNG--VVLEKQQCQR 299
+A IPGF +L +DQ L Q + + L L +R+ + + + C +++ +Q+
Sbjct: 57 WAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTL 116
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
D +L LH +++ + C+ L L+
Sbjct: 117 PCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLL 152
>pdb|3VHU|A Chain A, Mineralocorticoid Receptor Ligand-Binding Domain With
Spironolactone
Length = 294
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTK--LIFCNGVVLE 293
+ V++ +A +PGF +L EDQ L Q + + L L++R+ L F +V
Sbjct: 88 IQVVK-WAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFN 146
Query: 294 KQQCQRSFGDDWLNAILEFCQSLH 317
+++ +S A+ E CQ +H
Sbjct: 147 EEKMHQS-------AMYELCQGMH 163
>pdb|3BQD|A Chain A, Doubling The Size Of The Glucocorticoid Receptor Ligand
Binding Pocket By Deacylcortivazol
Length = 255
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNG--VVLEKQQCQR 299
+A IPGF +L +DQ L Q + + L L +R+ + + + C +++ +Q+
Sbjct: 55 WAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTL 114
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
D +L LH +++ + C+ L L+
Sbjct: 115 PCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLL 150
>pdb|3H52|A Chain A, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|B Chain B, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|C Chain C, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|D Chain D, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
Length = 254
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNG--VVLEKQQCQR 299
+A IPGF +L +DQ L Q + + L L +R+ + + + C +++ +Q+
Sbjct: 54 WAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTL 113
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
D +L LH +++ + C+ L L+
Sbjct: 114 PDMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLL 149
>pdb|3VHV|A Chain A, Mineralocorticoid Receptor Ligand-Binding Domain With
Non-Steroidal Antagonist
Length = 260
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTK--LIFCNGVVLE 293
+ V++ +A +PGF +L EDQ L Q + + L L++R+ L F +V
Sbjct: 54 IQVVK-WAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFN 112
Query: 294 KQQCQRSFGDDWLNAILEFCQSLH 317
+++ +S A+ E CQ +H
Sbjct: 113 EEKMHQS-------AMYELCQGMH 129
>pdb|3RY9|A Chain A, Crystal Structure Of The Resurrected Ancestral
Glucocorticoid Receptor 1 In Complex With Doc
pdb|3RY9|B Chain B, Crystal Structure Of The Resurrected Ancestral
Glucocorticoid Receptor 1 In Complex With Doc
Length = 250
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLEKQQCQR 299
+A +PGF +L +DQ L Q + + L L +R+ L F ++ +++ Q+
Sbjct: 49 WAKALPGFRNLHLDDQMTLLQYSWMSLMAFSLGWRSYQHTNGNMLYFAPDLIFNEERMQQ 108
Query: 300 SFGDDWLNAILEFCQSLH-------LMEIDISAFACLCALTLI 335
S ++ E C+ +H +++ + C+ L L+
Sbjct: 109 S-------SMYELCKGMHKISLEFVRLQVSYEEYLCMKVLLLL 144
>pdb|4E2J|A Chain A, X-Ray Crystal Structure Of The Ancestral Glucocorticoid
Receptor 2 Ligand Binding Domain In Complex With
Mometasone Furoate And Tif-2 Coactivator Fragment
pdb|4E2J|B Chain B, X-Ray Crystal Structure Of The Ancestral Glucocorticoid
Receptor 2 Ligand Binding Domain In Complex With
Mometasone Furoate And Tif-2 Coactivator Fragment
Length = 250
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLEKQQCQR 299
+A +PGF +L +DQ L Q + + L L +R+ ++ L F +V+ +++ Q
Sbjct: 51 WAKALPGFRNLHLDDQMTLLQYSWMSLMAFSLGWRSYKQSNGNMLCFAPDLVINEERMQL 110
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ D +L+ +++ + C+ L L+
Sbjct: 111 PYMYDQCQQMLKISSEFVRLQVSYDEYLCMKVLLLL 146
>pdb|3GN8|A Chain A, X-Ray Crystal Structure Of Ancgr2 In Complex With
Dexamethasone
pdb|3GN8|B Chain B, X-Ray Crystal Structure Of Ancgr2 In Complex With
Dexamethasone
Length = 249
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLEKQQCQR 299
+A +PGF +L +DQ L Q + + L L +R+ ++ L F +V+ +++ Q
Sbjct: 49 WAKALPGFRNLHLDDQMTLLQYSWMSLMAFSLGWRSYKQSNGNMLCFAPDLVINEERMQL 108
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ D +L+ +++ + C+ L L+
Sbjct: 109 PYMYDQCQQMLKISSEFVRLQVSYDEYLCMKVLLLL 144
>pdb|2AA2|A Chain A, Mineralocorticoid Receptor With Bound Aldosterone
pdb|2AA5|A Chain A, Mineralocorticoid Receptor With Bound Progesterone
pdb|2AA5|B Chain B, Mineralocorticoid Receptor With Bound Progesterone
pdb|2AA7|A Chain A, Mineralocorticoid Receptor With Bound Deoxycorticosterone
Length = 275
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTK--LIFCNGVVLE 293
+ V++ +A +PGF +L EDQ L Q + + L L++R+ L F +V
Sbjct: 69 IQVVK-WAKVLPGFKNLPLEDQITLIQYSWMSLSSFALSWRSYKHTNSQFLYFAPDLVFN 127
Query: 294 KQQCQRSFGDDWLNAILEFCQSLH 317
+++ +S A+ E CQ +H
Sbjct: 128 EEKMHQS-------AMYELCQGMH 144
>pdb|3MNO|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By (A611v, F608s)
Mutations At 1.55a
Length = 261
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLEKQQCQR 299
+A IPGF +L +DQ L Q + + L V L +R+ +A L F +++ +Q+
Sbjct: 61 WAKAIPGFRNLHLDDQMTLLQYSWMSLMVFALGWRSYRQASGNLLCFAPDLIINEQRMTL 120
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
D +L L +++ + C+ L L+
Sbjct: 121 PCMYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLL 156
>pdb|2A3I|A Chain A, Structural And Biochemical Mechanisms For The Specificity
Of Hormone Binding And Coactivator Assembly By
Mineralocorticoid Receptor
Length = 253
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTK--LIFCNGVVLE 293
+ V++ +A +PGF +L EDQ L Q + + L L++R+ L F +V
Sbjct: 47 IQVVK-WAKVLPGFKNLPLEDQITLIQYSWMSLSSFALSWRSYKHTNSQFLYFAPDLVFN 105
Query: 294 KQQCQRSFGDDWLNAILEFCQSLH 317
+++ +S A+ E CQ +H
Sbjct: 106 EEKMHQS-------AMYELCQGMH 122
>pdb|1UHL|A Chain A, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 236
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS L +DQ +L ++ EL + ++R+ ++ G+ + + +
Sbjct: 56 WAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAG 115
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M +D + CL A+ L
Sbjct: 116 VGAIFDRVLTELVSKMRDMRMDKTELGCLRAIIL 149
>pdb|1H9U|A Chain A, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|B Chain B, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|C Chain C, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|D Chain D, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
Length = 224
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS- 300
+A +IP FS L +DQ +L ++ EL + ++R+ ++ G+ + + +
Sbjct: 55 WAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAG 114
Query: 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
G + + E + M +D + CL A+ L
Sbjct: 115 VGAIFDRVLTELVSKMRDMRMDKTELGCLRAIIL 148
>pdb|2J14|A Chain A, 3,4,5-Trisubstituted Isoxazoles As Novel Ppardelta
Agonists: Part2
pdb|2J14|B Chain B, 3,4,5-Trisubstituted Isoxazoles As Novel Ppardelta
Agonists: Part2
pdb|3OZ0|A Chain A, Ppar Delta In Complex With Azppard02
Length = 285
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 10/148 (6%)
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFS 250
D E L+Q+ ++ + N L PP E + FY T+V+ +R FA IP FS
Sbjct: 58 HDIETLWQAEKGLVWKQLVNGL-PPYKEIS-VHVFYRCQCTTVETVRELTEFAKSIPSFS 115
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG---DDWLN 307
L DQ L + E LA + L+ NG ++ RS D +
Sbjct: 116 SLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANGSGFVTREFLRSLRKPFSDIIE 173
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
EF + +E+D S A A ++
Sbjct: 174 PKFEFAVKFNALELDDSDLALFIAAIIL 201
>pdb|3ET2|A Chain A, Structure Of Ppardelta With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
pdb|3ET2|B Chain B, Structure Of Ppardelta With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 287
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 10/148 (6%)
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFS 250
D E L+Q+ ++ + N L PP E + FY T+V+ +R FA IP FS
Sbjct: 60 HDIETLWQAEKGLVWKQLVNGL-PPYKEIS-VHVFYRCQCTTVETVRELTEFAKSIPSFS 117
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG---DDWLN 307
L DQ L + E LA + L+ NG ++ RS D +
Sbjct: 118 SLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANGSGFVTREFLRSLRKPFSDIIE 175
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
EF + +E+D S A A ++
Sbjct: 176 PKFEFAVKFNALELDDSDLALFIAAIIL 203
>pdb|3SP9|A Chain A, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
pdb|3SP9|B Chain B, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
Length = 281
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 10/148 (6%)
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFS 250
D E L+Q+ ++ + N L PP E + FY T+V+ +R FA IP FS
Sbjct: 54 HDIETLWQAEKGLVWKQLVNGL-PPYKEIS-VHVFYRCQCTTVETVRELTEFAKSIPSFS 111
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG---DDWLN 307
L DQ L + E LA + L+ NG ++ RS D +
Sbjct: 112 SLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANGSGFVTREFLRSLRKPFSDIIE 169
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
EF + +E+D S A A ++
Sbjct: 170 PKFEFAVKFNALELDDSDLALFIAAIIL 197
>pdb|2Q5G|A Chain A, Ligand Binding Domain Of Ppar Delta Receptor In Complex
With A Partial Agonist
pdb|2Q5G|B Chain B, Ligand Binding Domain Of Ppar Delta Receptor In Complex
With A Partial Agonist
Length = 283
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 10/148 (6%)
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFS 250
D E L+Q+ ++ + N L PP E + FY T+V+ +R FA IP FS
Sbjct: 56 HDIETLWQAEKGLVWKQLVNGL-PPYKEIS-VHVFYRCQCTTVETVRELTEFAKSIPSFS 113
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG---DDWLN 307
L DQ L + E LA + L+ NG ++ RS D +
Sbjct: 114 SLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANGSGFVTREFLRSLRKPFSDIIE 171
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
EF + +E+D S A A ++
Sbjct: 172 PKFEFAVKFNALELDDSDLALFIAAIIL 199
>pdb|2ZNP|A Chain A, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp204
pdb|2ZNP|B Chain B, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp204
pdb|2ZNQ|A Chain A, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp401
pdb|2ZNQ|B Chain B, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp401
Length = 276
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 10/148 (6%)
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFS 250
D E L+Q+ ++ + N L PP E + FY T+V+ +R FA IP FS
Sbjct: 49 HDIETLWQAEKGLVWKQLVNGL-PPYKEIS-VHVFYRCQCTTVETVRELTEFAKSIPSFS 106
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG---DDWLN 307
L DQ L + E LA + L+ NG ++ RS D +
Sbjct: 107 SLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANGSGFVTREFLRSLRKPFSDIIE 164
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
EF + +E+D S A A ++
Sbjct: 165 PKFEFAVKFNALELDDSDLALFIAAIIL 192
>pdb|3TKM|A Chain A, Crystal Structure Ppar Delta Binding Gw0742
Length = 275
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 10/148 (6%)
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFS 250
D E L+Q+ ++ + N L PP E + FY T+V+ +R FA IP FS
Sbjct: 48 HDIETLWQAEKGLVWKQLVNGL-PPYKEIS-VHVFYRCQCTTVETVRELTEFAKSIPSFS 105
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG---DDWLN 307
L DQ L + E LA + L+ NG ++ RS D +
Sbjct: 106 SLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANGSGFVTREFLRSLRKPFSDIIE 163
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
EF + +E+D S A A ++
Sbjct: 164 PKFEFAVKFNALELDDSDLALFIAAIIL 191
>pdb|3MNP|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By (A611v, V708a,
E711g) Mutations At 1.50a
Length = 261
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLEKQQCQR 299
+A IPGF +L +DQ L Q + + L V L +R+ +A L F +++ +Q+
Sbjct: 61 WAKAIPGFRNLHLDDQMTLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLIINEQRMTL 120
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
D +L L +++ + C+ L L+
Sbjct: 121 PCMYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLL 156
>pdb|2B50|A Chain A, Human Nuclear Receptor-Ligand Complex 2
pdb|2B50|B Chain B, Human Nuclear Receptor-Ligand Complex 2
Length = 272
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 10/148 (6%)
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFS 250
D E L+Q+ ++ + N L PP E + FY T+V+ +R FA IP FS
Sbjct: 46 HDIETLWQAEKGLVWKQLVNGL-PPYKEIS-VHVFYRCQCTTVETVRELTEFAKSIPSFS 103
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG---DDWLN 307
L DQ L + E LA + L+ NG ++ RS D +
Sbjct: 104 SLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANGSGFVTREFLRSLRKPFSDIIE 161
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
EF + +E+D S A A ++
Sbjct: 162 PKFEFAVKFNALELDDSDLALFIAAIIL 189
>pdb|2XYJ|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYJ|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYW|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYW|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYX|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYX|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
Length = 288
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 10/148 (6%)
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFS 250
D E L+Q+ ++ + N L PP E + FY T+V+ +R FA IP FS
Sbjct: 61 HDIETLWQAEKGLVWKQLVNGL-PPYKEIS-VHVFYRCQCTTVETVRELTEFAKSIPSFS 118
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG---DDWLN 307
L DQ L + E LA + L+ NG ++ RS D +
Sbjct: 119 SLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANGSGFVTREFLRSLRKPFSDIIE 176
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
EF + +E+D S A A ++
Sbjct: 177 PKFEFAVKFNALELDDSDLALFIAAIIL 204
>pdb|1Y0S|A Chain A, Crystal Structure Of Ppar Delta Complexed With Gw2331
pdb|1Y0S|B Chain B, Crystal Structure Of Ppar Delta Complexed With Gw2331
Length = 272
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 10/148 (6%)
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFS 250
D E L+Q+ ++ + N L PP E + FY T+V+ +R FA IP FS
Sbjct: 45 HDIETLWQAEKGLVWKQLVNGL-PPYKEIS-VHVFYRCQCTTVETVRELTEFAKSIPSFS 102
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAI- 309
L DQ L + E LA + L+ NG ++ RS + + I
Sbjct: 103 SLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANGSGFVTREFLRSLRKPFSDIIE 160
Query: 310 --LEFCQSLHLMEIDISAFACLCALTLI 335
EF + +E+D S A A ++
Sbjct: 161 PKFEFAVKFNALELDDSDLALFIAAIIL 188
>pdb|2OAX|A Chain A, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|B Chain B, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|C Chain C, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|D Chain D, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|E Chain E, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|F Chain F, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
Length = 256
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTK--LIFCNGVVLE 293
+ V++ +A +PGF +L EDQ L Q + + L L++R+ L F +V
Sbjct: 50 IQVVK-WAKVLPGFKNLPLEDQITLIQYSWMCLLSFALSWRSYKHTNSQFLYFAPDLVFN 108
Query: 294 KQQCQRSFGDDWLNAILEFCQSLH 317
+++ +S A+ E CQ +H
Sbjct: 109 EEKMHQS-------AMYELCQGMH 125
>pdb|1LV2|A Chain A, Hepatocyte Nuclear Factor 4 Is A Transcription Factor That
Constitutively Binds Fatty Acids
Length = 229
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%)
Query: 238 VIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC 297
V+ +A IP F +L +DQ L ++ + E +L R+ L+ N V+ + C
Sbjct: 50 VLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMYKDILLLGNNYVIHRNSC 109
Query: 298 QRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + E + ++ID + +ACL A+
Sbjct: 110 EVEISRVANRVLDELVRPFQEIQIDDNEYACLKAIVF 146
>pdb|1Y9R|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1Y9R|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|C Chain C, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
Length = 255
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTK--LIFCNGVVLE 293
+ V++ +A +PGF +L EDQ L Q + + L L++R+ L F +V
Sbjct: 49 IQVVK-WAKVLPGFKNLPLEDQITLIQYSWMCLLSFALSWRSYKHTNSQFLYFAPDLVFN 107
Query: 294 KQQCQRSFGDDWLNAILEFCQSLH 317
+++ +S A+ E CQ +H
Sbjct: 108 EEKMHQS-------AMYELCQGMH 124
>pdb|2GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|2GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|2BAW|A Chain A, Human Nuclear Receptor-Ligand Complex 1
pdb|2BAW|B Chain B, Human Nuclear Receptor-Ligand Complex 1
pdb|3D5F|A Chain A, Crystal Structure Of Ppar-Delta Complex
pdb|3D5F|B Chain B, Crystal Structure Of Ppar-Delta Complex
Length = 267
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 10/148 (6%)
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFS 250
D E L+Q+ ++ + N L PP E + FY T+V+ +R FA IP FS
Sbjct: 40 HDIETLWQAEKGLVWKQLVNGL-PPYKEIS-VHVFYRCQCTTVETVRELTEFAKSIPSFS 97
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG---DDWLN 307
L DQ L + E LA + L+ NG ++ RS D +
Sbjct: 98 SLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANGSGFVTREFLRSLRKPFSDIIE 155
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
EF + +E+D S A A ++
Sbjct: 156 PKFEFAVKFNALELDDSDLALFIAAIIL 183
>pdb|1GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|1GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|3GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-activated Receptors
pdb|3GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-activated Receptors
pdb|3DY6|A Chain A, Ppardelta Complexed With An Anthranilic Acid Partial
Agonist
pdb|3DY6|B Chain B, Ppardelta Complexed With An Anthranilic Acid Partial
Agonist
pdb|3PEQ|A Chain A, Ppard Complexed With A Phenoxyacetic Acid Partial Agonist
pdb|3PEQ|B Chain B, Ppard Complexed With A Phenoxyacetic Acid Partial Agonist
Length = 271
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 10/148 (6%)
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFS 250
D E L+Q+ ++ + N L PP E + FY T+V+ +R FA IP FS
Sbjct: 44 HDIETLWQAEKGLVWKQLVNGL-PPYKEIS-VHVFYRCQCTTVETVRELTEFAKSIPSFS 101
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG---DDWLN 307
L DQ L + E LA + L+ NG ++ RS D +
Sbjct: 102 SLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANGSGFVTREFLRSLRKPFSDIIE 159
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
EF + +E+D S A A ++
Sbjct: 160 PKFEFAVKFNALELDDSDLALFIAAIIL 187
>pdb|2AWH|A Chain A, Human Nuclear Receptor-Ligand Complex 1
pdb|2AWH|B Chain B, Human Nuclear Receptor-Ligand Complex 1
Length = 268
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 10/148 (6%)
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFS 250
D E L+Q+ ++ + N L PP E + FY T+V+ +R FA IP FS
Sbjct: 41 HDIETLWQAEKGLVWKQLVNGL-PPYKEIS-VHVFYRCQCTTVETVRELTEFAKSIPSFS 98
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG---DDWLN 307
L DQ L + E LA + L+ NG ++ RS D +
Sbjct: 99 SLFLNDQVTLLKYGVHEAIFAMLA--SIVNKDGLLVANGSGFVTREFLRSLRKPFSDIIE 156
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
EF + +E+D S A A ++
Sbjct: 157 PKFEFAVKFNALELDDSDLALFIAAIIL 184
>pdb|2AM9|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Testosterone
pdb|2AMA|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Dihydrotestosterone
pdb|2AMB|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Tetrahydrogestrinone
pdb|2PNU|A Chain A, Crystal Structure Of Human Androgen Receptor
Ligand-Binding Domain In Complex With Em-5744
pdb|3V49|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 1
Length = 266
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 60 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 118
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 119 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 159
>pdb|1I37|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Dihydrotestosterone
pdb|2IHQ|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domian Complex With An N-Aryl-
Hydroxybicyclohydantoin
pdb|2NW4|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Bms-564929
pdb|3G0W|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With An N-Aryl-Oxazolidin 2-Imine
Inhibitor
Length = 260
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 54 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 112
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 113 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 153
>pdb|1E3G|A Chain A, Human Androgen Receptor Ligand Binding In Complex With The
Ligand Metribolone (R1881)
Length = 263
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 57 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 115
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 116 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 156
>pdb|3MNE|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By F608s Mutation At
1.96a
Length = 261
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLEKQQCQR 299
+A IPGF +L +DQ L Q + + L L +R+ +A L F +++ +Q+
Sbjct: 61 WAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQASGNLLCFAPDLIINEQRMTL 120
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
D +L L +++ + C+ L L+
Sbjct: 121 PCMYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLL 156
>pdb|1I38|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With
Dihydrotestosterone
pdb|1XNN|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With (3a-Alpha-,4-
Alpha
7-Alpha-,7a-Alpha-)-3a,4,7,7a-Tetrahydro-2-(4-Nitro-
1-Naphthalenyl)-4,7-Ethano-1h-Isoindole-1,3(2h)-Dione
Length = 260
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 54 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 112
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 113 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 153
>pdb|2Z4J|A Chain A, Crystal Structure Of Ar Lbd With Shp Peptide Nr Box 2
Length = 248
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 43 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 101
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 102 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 142
>pdb|1XJ7|A Chain A, Complex Androgen Receptor Lbd And Rac3 Peptide
pdb|2Q7I|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And An Ar 20-30 Peptide
pdb|2Q7J|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And A Tif2 Box 3 Coactivator
Peptide 740-753
Length = 257
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 51 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 109
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 110 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 150
>pdb|1T73|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxff Motif
pdb|1T74|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxlf Motif
pdb|1T76|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxvw Motif
pdb|1T79|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlw Motif
pdb|1T7F|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Lxxll Motif
pdb|1T7M|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxyf Motif
pdb|1T7R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlf Motif
pdb|1T7T|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With 5-Alpha Dihydrotestosterone
Length = 269
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 63 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 121
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 122 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 162
>pdb|3L3X|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The First Motif Of Steroid Receptor
Coactivator 3
pdb|3L3Z|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The Third Motif Of Steroid Receptor
Coactivator 3
Length = 250
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 45 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 103
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 104 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 144
>pdb|2Q7K|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And An Ar 20-30
Peptide
pdb|2Q7L|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And A Tif2 Box3
Coactivator Peptide 740-753
Length = 257
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 51 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 109
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 110 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 150
>pdb|2AX9|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With R-3
pdb|2AXA|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With S-1
pdb|2YLO|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLP|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLQ|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|3ZQT|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|4HLW|A Chain A, Targeting The Binding Function 3 (bf3) Site Of The Human
Androgen Receptor Through Virtual Screening. 2.
Development Of 2-((2- Phenoxyethyl)
Thio)-1h-benzoimidazole Derivatives
Length = 256
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 50 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 108
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 109 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 149
>pdb|2HVC|A Chain A, The Crystal Structure Of Ligand-Binding Domain (Lbd) Of
Human Androgen Receptor In Complex With A Selective
Modulator Lgd2226
Length = 250
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 45 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 103
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 104 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 144
>pdb|2AX6|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With Hydroxyflutamide
pdb|2AX7|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With S-1
Length = 256
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 50 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 108
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 109 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 149
>pdb|2OZ7|A Chain A, Crystal Structure Of The Human Androgen Receptor T877a
Mutant Ligand- Binding Domain With Cyproterone Acetate
Length = 249
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 43 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 101
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 102 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 142
>pdb|1T5Z|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain (Lbd) With Dht And A Peptide Derived From Its
Physiological Coactivator Ara70
pdb|1T63|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived From Its
Physiological Coactivator Grip1 Nr Box3
pdb|1T65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived Form Its
Physiological Coactivator Grip1 Nr Box 2 Bound In A Non-
Helical Conformation
pdb|2PIO|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIP|L Chain L, Androgen Receptor Lbd With Small Molecule
pdb|2PIQ|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIR|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIT|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIU|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIV|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIW|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIX|A Chain A, Ar Lbd With Small Molecule
pdb|2PKL|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2QPY|A Chain A, Ar Lbd With Small Molecule
Length = 251
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 45 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 103
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 104 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 144
>pdb|1XOW|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With An Androgen Receptor Nh2-
Terminal Peptide, Ar20-30, And R1881
pdb|1XQ3|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With R1881
pdb|2AO6|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With Tif2(Iii) 740-753 Peptide And
R1881
pdb|3B5R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-31
pdb|3B65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-24
pdb|3B66|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-21
pdb|3B67|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-23
pdb|3B68|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-4
pdb|2YHD|A Chain A, Human Androgen Receptor In Complex With Af2 Small Molecule
Inhibitor
pdb|3V4A|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 2
Length = 249
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 43 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 101
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 102 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 142
>pdb|1GS4|A Chain A, Structural Basis For The Glucocorticoid Response In A
Mutant Human Androgen Receptor (Arccr) Derived From An
Androgen-Independent Prostate Cancer
Length = 248
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 44 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 102
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 103 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 143
>pdb|3RLJ|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-22
Length = 247
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 43 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 101
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 102 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 142
>pdb|3RLL|A Chain A, Crystal Structure Of The T877a Androgen Receptor Ligand
Binding Domain In Complex With
(S)-N-(4-Cyano-3-(Trifluoromethyl)phenyl)-3-(4-
Cyanonaphthalen-1-Yloxy)-2-Hydroxy-2-Methylpropanamide
Length = 247
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 43 VHVVK-WAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 101
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 102 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 142
>pdb|3LTX|A Chain A, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|B Chain B, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|C Chain C, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|D Chain D, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
Length = 243
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 200 FQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFSDLCKED 256
A+L + N +PP K+ SL+ + + H +A +PG++DL D
Sbjct: 14 LNKAALPVLESHHNHGQPPT----KVHLLNSLVKLAERELVHLINWAKNVPGYTDLSLSD 69
Query: 257 QELLFQSASLELFVLRLAYRTRAEDTK-LIFCNGVVLEK 294
Q L + +EL +L A+R+ K L F +VL++
Sbjct: 70 QVHLIECCWMELLLLNCAFRSIEHGGKSLAFAPDLVLDR 108
>pdb|2AX8|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain W741l Mutant In Complex With S-1
Length = 256
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 50 VHVVK-WAKALPGFRNLHVDDQMAVIQYSLMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 108
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 109 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 149
>pdb|3GZ9|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Delta (Ppard) In Complex With A Full Agonist
Length = 269
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 10/148 (6%)
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFS 250
D E L+Q+ ++ + N L PP E + FY T+V+ +R FA IP F
Sbjct: 44 HDIETLWQAEKGLVWKQLVNGL-PPYKEIS-VHVFYRCQCTTVETVRELTEFAKSIPSFG 101
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG---DDWLN 307
L DQ L + E LA + L+ NG ++ RS D +
Sbjct: 102 SLFLNDQVTLLKYGVHEAIFAMLA--SLVNKDGLLVANGSGFVTREFLRSLRKPFSDIIE 159
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
EF + +E+D S A A ++
Sbjct: 160 PKFEFAVKFNALELDDSDLALFIAAIIL 187
>pdb|2ABI|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
pdb|2ABI|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
pdb|2ABI|C Chain C, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
Length = 256
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTK--LIFCNGVVLE 293
+ V++ +A +PGF +L EDQ L Q + + L L++R+ L F +V
Sbjct: 50 IQVVK-WAKVLPGFKNLPLEDQITLIQYSWMCLSSFALSWRSYKHTNSQFLYFAPDLVFN 108
Query: 294 KQQCQRSFGDDWLNAILEFCQSLH 317
+++ +S A+ E CQ +H
Sbjct: 109 EEKMHQS-------AMYELCQGMH 125
>pdb|1Z95|A Chain A, Crystal Structure Of The Androgen Receptor Ligand-Binding
Domain W741l Mutant Complex With R-Bicalutamide
Length = 246
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 236 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLE 293
V V++ +A +PGF +L +DQ + Q + + L V + +R T L F +V
Sbjct: 42 VHVVK-WAKALPGFRNLHVDDQMAVIQYSLMGLMVFAMGWRSFTNVNSRMLYFAPDLVFN 100
Query: 294 KQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
+ + +S + Q ++I F C+ AL L
Sbjct: 101 EYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLL 141
>pdb|1K74|D Chain D, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides
Length = 283
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 92 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 149
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 150 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 199
>pdb|3S9S|A Chain A, Ligand Binding Domain Of Ppargamma Complexed With A
Benzimidazole Partial Agonist
Length = 284
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 93 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 150
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 151 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 200
>pdb|3BC5|A Chain A, X-Ray Crystal Structure Of Human Ppar Gamma With
2-(5-(3-(2-
(5-Methyl-2-Phenyloxazol-4-Yl)ethoxy)benzyl)-2-Phenyl-
2h-1, 2,3-Triazol-4-Yl)acetic Acid
Length = 296
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 105 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 162
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 163 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 212
>pdb|3CS8|A Chain A, Structural And Biochemical Basis For The Binding
Selectivity Of Pparg To Pgc-1a
Length = 275
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 85 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 142
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 143 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 192
>pdb|3LMP|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|3B1M|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator Cerco-A
pdb|3V9T|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|3V9V|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|3V9Y|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|4F9M|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
Length = 283
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 92 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 149
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 150 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 199
>pdb|3ET0|A Chain A, Structure Of Ppargamma With 3-(5-Methoxy-1h-Indol-3-Yl)-
Propionic Acid
pdb|3ET0|B Chain B, Structure Of Ppargamma With 3-(5-Methoxy-1h-Indol-3-Yl)-
Propionic Acid
Length = 292
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 101 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 158
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 159 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 208
>pdb|3ET3|A Chain A, Structure Of Ppargamma With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 292
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 101 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 158
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 159 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 208
>pdb|1SR7|A Chain A, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1SR7|B Chain B, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1ZUC|B Chain B, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
pdb|1ZUC|A Chain A, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
Length = 259
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLEKQQCQR 299
++ +PGF +L +DQ L Q + + L V L +R+ L F ++L +Q+ +
Sbjct: 58 WSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKE 117
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
S + + Q +++ F C+ L L+
Sbjct: 118 SSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLL 153
>pdb|1ZEO|A Chain A, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With An Alpha-Aryloxyphenylacetic Acid
Agonist
pdb|1ZEO|B Chain B, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With An Alpha-Aryloxyphenylacetic Acid
Agonist
pdb|2P4Y|A Chain A, Crystal Structure Of Human Ppar-Gamma-Ligand Binding
Domain Complexed With An Indole-Based Modulator
pdb|2P4Y|B Chain B, Crystal Structure Of Human Ppar-Gamma-Ligand Binding
Domain Complexed With An Indole-Based Modulator
pdb|3TY0|A Chain A, Structure Of Ppargamma Ligand Binding Domain In Complex
With (R)-5-(3-
((3-(6-Methoxybenzo[d]isoxazol-3-Yl)-2-Oxo-2,
3-Dihydro-1h-
Benzo[d]imidazol-1-Yl)methyl)phenyl)-5-
Methyloxazolidine-2,4-Dione
pdb|3TY0|B Chain B, Structure Of Ppargamma Ligand Binding Domain In Complex
With (R)-5-(3-
((3-(6-Methoxybenzo[d]isoxazol-3-Yl)-2-Oxo-2,
3-Dihydro-1h-
Benzo[d]imidazol-1-Yl)methyl)phenyl)-5-
Methyloxazolidine-2,4-Dione
Length = 277
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 86 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 143
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 144 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 193
>pdb|1E3K|A Chain A, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|1E3K|B Chain B, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|3D90|A Chain A, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
pdb|3D90|B Chain B, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
Length = 258
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLEKQQCQR 299
++ +PGF +L +DQ L Q + + L V L +R+ L F ++L +Q+ +
Sbjct: 57 WSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKE 116
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
S + + Q +++ F C+ L L+
Sbjct: 117 SSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLL 152
>pdb|2Q59|B Chain B, Crystal Structure Of Ppargamma Lbd Bound To Full Agonist
Mrl20
pdb|2Q5P|A Chain A, Crystal Structure Of Ppargamma Bound To Partial Agonist
Mrl24
pdb|2Q5P|B Chain B, Crystal Structure Of Ppargamma Bound To Partial Agonist
Mrl24
pdb|2Q5S|A Chain A, Crystal Structure Of Ppargamma Bound To Partial Agonist
Ntzdpa
pdb|2Q5S|B Chain B, Crystal Structure Of Ppargamma Bound To Partial Agonist
Ntzdpa
pdb|2Q61|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain Bound
To Partial Agonist Sr145
pdb|2Q61|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain Bound
To Partial Agonist Sr145
pdb|2Q6R|A Chain A, Crystal Structure Of Ppar Gamma Complexed With Partial
Agonist Sf147
pdb|2Q6R|B Chain B, Crystal Structure Of Ppar Gamma Complexed With Partial
Agonist Sf147
pdb|2Q6S|A Chain A, 2.4 Angstrom Crystal Structure Of Ppar Gamma Complexed To
Bvt.13 Without Co-Activator Peptides
pdb|2Q6S|B Chain B, 2.4 Angstrom Crystal Structure Of Ppar Gamma Complexed To
Bvt.13 Without Co-Activator Peptides
Length = 274
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 83 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 140
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 141 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 190
>pdb|1WM0|X Chain X, Ppargamma In Complex With A 2-Baba Compound
Length = 292
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 101 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 158
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 159 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 208
>pdb|2VSR|A Chain A, Hppargamma Ligand Binding Domain In Complex With
9-(S)-Hode
pdb|2VSR|B Chain B, Hppargamma Ligand Binding Domain In Complex With
9-(S)-Hode
pdb|2VST|A Chain A, Hppargamma Ligand Binding Domain In Complex With 13-(S)-
Hode
pdb|2VST|B Chain B, Hppargamma Ligand Binding Domain In Complex With 13-(S)-
Hode
pdb|2VV0|A Chain A, Hppargamma Ligand Binding Domain In Complex With Dha
pdb|2VV0|B Chain B, Hppargamma Ligand Binding Domain In Complex With Dha
pdb|2VV1|A Chain A, Hppargamma Ligand Binding Domain In Complex With 4-Hdha
pdb|2VV2|A Chain A, Hppargamma Ligand Binding Domain In Complex With 5-Hepa
pdb|2VV2|B Chain B, Hppargamma Ligand Binding Domain In Complex With 5-Hepa
pdb|2VV3|A Chain A, Hppargamma Ligand Binding Domain In Complex With 4-Oxodha
pdb|2VV3|B Chain B, Hppargamma Ligand Binding Domain In Complex With 4-Oxodha
pdb|2VV4|A Chain A, Hppargamma Ligand Binding Domain In Complex With 6-Oxoote
Length = 276
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 85 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 142
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 143 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 192
>pdb|3R8A|A Chain A, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Compound With Dual Ppar
Gamma Agonism And Angiotensin Ii Type I Receptor
Antagonism Activity
pdb|3R8A|B Chain B, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Compound With Dual Ppar
Gamma Agonism And Angiotensin Ii Type I Receptor
Antagonism Activity
Length = 282
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 91 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 148
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 149 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 198
>pdb|1RDT|D Chain D, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
Length = 284
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 93 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 150
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 151 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 200
>pdb|2VV1|B Chain B, Hppargamma Ligand Binding Domain In Complex With 4-Hdha
Length = 276
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 85 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 142
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 143 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 192
>pdb|2I4J|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Agonist Lt160 (Ureidofibrate Derivative)
pdb|2I4J|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Agonist Lt160 (Ureidofibrate Derivative)
pdb|2I4P|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative).
Structure Obtained From Crystals Of The Apo-Form Soaked
For 30 Days.
pdb|2I4P|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative).
Structure Obtained From Crystals Of The Apo-Form Soaked
For 30 Days.
pdb|2I4Z|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative). This
Structure Has Been Obtained From Crystals Soaked For 6
Hours.
pdb|2I4Z|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative). This
Structure Has Been Obtained From Crystals Soaked For 6
Hours.
pdb|3B3K|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Full Agonist Lt175
pdb|3B3K|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Full Agonist Lt175
pdb|3CDS|A Chain A, Crystal Structure Of The Complex Between Ppar-Gamma And
The Agonist Lt248 (Clofibric Acid Analogue)
pdb|3CDS|B Chain B, Crystal Structure Of The Complex Between Ppar-Gamma And
The Agonist Lt248 (Clofibric Acid Analogue)
pdb|3D6D|A Chain A, Crystal Structure Of The Complex Between Ppargamma Lbd And
The Lt175(R-Enantiomer)
pdb|3D6D|B Chain B, Crystal Structure Of The Complex Between Ppargamma Lbd And
The Lt175(R-Enantiomer)
pdb|3CDP|A Chain A, Crystal Structure Of Ppar-Gamma Lbd Complexed With A
Partial Agonist, Analogue Of Clofibric Acid
pdb|3CDP|B Chain B, Crystal Structure Of Ppar-Gamma Lbd Complexed With A
Partial Agonist, Analogue Of Clofibric Acid
pdb|2ZK0|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain
pdb|2ZK0|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain
pdb|2ZK1|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With
15-Deoxy-Delta12,14- Prostaglandin J2
pdb|2ZK1|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With
15-Deoxy-Delta12,14- Prostaglandin J2
pdb|2ZK2|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Glutathion
Conjugated 15-Deoxy-Delta12,14-Prostaglandin J2
pdb|2ZK2|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Glutathion
Conjugated 15-Deoxy-Delta12,14-Prostaglandin J2
pdb|2ZK3|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 8-Oxo-
Eicosatetraenoic Acid
pdb|2ZK3|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 8-Oxo-
Eicosatetraenoic Acid
pdb|2ZK4|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 15-Oxo-
Eicosatetraenoic Acid
pdb|2ZK4|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 15-Oxo-
Eicosatetraenoic Acid
pdb|2ZK5|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Nitro-233
pdb|2ZK5|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Nitro-233
pdb|2ZK6|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With C8-Bodipy
pdb|2ZK6|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With C8-Bodipy
pdb|2ZNO|A Chain A, Human Pprr Gamma Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|2ZNO|B Chain B, Human Pprr Gamma Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|3HO0|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3HO0|B Chain B, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3HOD|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3HOD|B Chain B, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3AN3|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo3s
pdb|3AN3|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo3s
pdb|3AN4|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo4r
pdb|3AN4|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo4r
pdb|3VJH|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl35
pdb|3VJH|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl35
pdb|3VJI|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl53
pdb|3VJI|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl53
Length = 286
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 96 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 153
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 154 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 203
>pdb|2Q59|A Chain A, Crystal Structure Of Ppargamma Lbd Bound To Full Agonist
Mrl20
Length = 274
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA L+
Sbjct: 83 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--------SLMN 132
Query: 287 CNGVVLEKQQ----------CQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+GV++ + Q ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 133 KDGVLISEGQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 190
>pdb|2HFP|A Chain A, Crystal Structure Of Ppar Gamma With N-Sulfonyl-2-Indole
Carboxamide Ligands
Length = 282
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 235 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEK 294
+V I +A IPGF +L DQ L + E+ LA + + G + +
Sbjct: 97 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 156
Query: 295 --QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 157 FLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 198
>pdb|1I7I|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With The Agonist Az 242
pdb|1I7I|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With The Agonist Az 242
Length = 292
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 101 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 158
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 159 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 208
>pdb|1FM6|D Chain D, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM6|X Chain X, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM9|D Chain D, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
pdb|1ZGY|A Chain A, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
pdb|2POB|A Chain A, Ppargamma Ligand Binding Domain Complexed With A
Farglitazar Analogue Gw4709
pdb|2POB|B Chain B, Ppargamma Ligand Binding Domain Complexed With A
Farglitazar Analogue Gw4709
pdb|3FUR|A Chain A, Crystal Structure Of Pparg In Complex With Int131
pdb|3H0A|D Chain D, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
pdb|3K8S|A Chain A, Crystal Structure Of Pparg In Complex With T2384
pdb|3K8S|B Chain B, Crystal Structure Of Pparg In Complex With T2384
pdb|3KMG|A Chain A, The X-Ray Crystal Structure Of Ppar-Gamma In Complex With
An Indole Derivative Modulator, Gsk538, And An Src-1
Peptide
pdb|3KMG|D Chain D, The X-Ray Crystal Structure Of Ppar-Gamma In Complex With
An Indole Derivative Modulator, Gsk538, And An Src-1
Peptide
Length = 272
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 81 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 138
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 139 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 188
>pdb|3ADS|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin
pdb|3ADS|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin
pdb|3ADT|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
5-Hydroxy-Indole Acetate
pdb|3ADT|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
5-Hydroxy-Indole Acetate
pdb|3ADU|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate
pdb|3ADU|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate
pdb|3ADV|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
Serotonin
pdb|3ADV|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
Serotonin
pdb|3ADW|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate And 15-Oxo-Eicosatetraenoic
Acid
pdb|3ADW|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate And 15-Oxo-Eicosatetraenoic
Acid
pdb|3ADX|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin And Nitro-233
pdb|3ADX|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin And Nitro-233
pdb|3R8I|A Chain A, Crystal Structure Of Ppargamma With An Achiral
Ureidofibrate Derivative (Rt86)
pdb|3R8I|B Chain B, Crystal Structure Of Ppargamma With An Achiral
Ureidofibrate Derivative (Rt86)
pdb|2YFE|A Chain A, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 1
pdb|2YFE|B Chain B, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 1
pdb|4A4V|A Chain A, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4A4V|B Chain B, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4A4W|A Chain A, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4A4W|B Chain B, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4E4K|A Chain A, Crystal Structure Of Ppargamma With The Ligand Jo21
pdb|4E4K|B Chain B, Crystal Structure Of Ppargamma With The Ligand Jo21
pdb|4E4Q|A Chain A, Crystal Structure Of Ppargamma With The Ligand Fs214
pdb|4E4Q|B Chain B, Crystal Structure Of Ppargamma With The Ligand Fs214
Length = 287
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 96 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 153
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 154 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 203
>pdb|3G8O|A Chain A, Progesterone Receptor With Bound Pyrrolidine 1
pdb|3G8O|B Chain B, Progesterone Receptor With Bound Pyrrolidine 1
Length = 263
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLEKQQCQR 299
++ +PGF +L +DQ L Q + + L V L +R+ L F ++L +Q+ +
Sbjct: 62 WSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKE 121
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
S + + Q +++ F C+ L L+
Sbjct: 122 SSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLL 157
>pdb|2OM9|A Chain A, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|2OM9|B Chain B, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|2OM9|C Chain C, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|2OM9|D Chain D, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|3SZ1|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Luteolin And Myristic Acid
pdb|3SZ1|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Luteolin And Myristic Acid
Length = 278
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 87 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 144
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 145 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 194
>pdb|3OSI|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrachloro-Bisphenol A (Tcbpa)
pdb|3OSI|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrachloro-Bisphenol A (Tcbpa)
pdb|3OSW|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrabromo-Bisphenol A (Tbbpa)
pdb|3OSW|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrabromo-Bisphenol A (Tbbpa)
Length = 285
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 95 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 152
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 153 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 202
>pdb|1KNU|A Chain A, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With A Synthetic
Agonist
pdb|1KNU|B Chain B, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With A Synthetic
Agonist
pdb|2XKW|A Chain A, Ligand Binding Domain Of Human Ppar-Gamma In Complex With
The Agonist Pioglitazone
pdb|2XKW|B Chain B, Ligand Binding Domain Of Human Ppar-Gamma In Complex With
The Agonist Pioglitazone
pdb|3R5N|A Chain A, Crystal Structure Of Ppargammalbd Complexed With The
Agonist Magnolol
Length = 274
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 83 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 140
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 141 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 190
>pdb|1NYX|A Chain A, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With An Agonist
pdb|1NYX|B Chain B, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With An Agonist
Length = 276
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 85 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 142
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 143 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 192
>pdb|2VV4|B Chain B, Hppargamma Ligand Binding Domain In Complex With 6-Oxoote
Length = 276
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 85 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 142
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 143 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 192
>pdb|1SQN|A Chain A, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
pdb|1SQN|B Chain B, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
Length = 261
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLEKQQCQR 299
++ +PGF +L +DQ L Q + + L V L +R+ L F ++L +Q+ +
Sbjct: 60 WSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKE 119
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
S + + Q +++ F C+ L L+
Sbjct: 120 SSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLL 155
>pdb|3B0Q|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Mcc555
pdb|3B0Q|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Mcc555
pdb|3B0R|A Chain A, Human Ppar Gamma Ligand Binding Dmain Complexed With
Gw9662 In A Covalent Bonded Form
pdb|3B0R|B Chain B, Human Ppar Gamma Ligand Binding Dmain Complexed With
Gw9662 In A Covalent Bonded Form
Length = 274
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 84 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 141
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 142 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 191
>pdb|2W8Y|A Chain A, Ru486 Bound To The Progesterone Receptor In A Destabilized
Agonistic Conformation
pdb|2W8Y|B Chain B, Ru486 Bound To The Progesterone Receptor In A Destabilized
Agonistic Conformation
pdb|3ZR7|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZR7|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|4A2J|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4A2J|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4APU|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
pdb|4APU|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
Length = 260
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLEKQQCQR 299
++ +PGF +L +DQ L Q + + L V L +R+ L F ++L +Q+ +
Sbjct: 59 WSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKE 118
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
S + + Q +++ F C+ L L+
Sbjct: 119 SSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLL 154
>pdb|2ZVT|A Chain A, Cys285ser Mutant Ppargamma Ligand-Binding Domain Complexed
With 15-Deoxy-Delta12,14-Prostaglandin J2
pdb|2ZVT|B Chain B, Cys285ser Mutant Ppargamma Ligand-Binding Domain Complexed
With 15-Deoxy-Delta12,14-Prostaglandin J2
Length = 286
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA L+
Sbjct: 96 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--------SLMN 145
Query: 287 CNGVVLEKQQ----------CQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+GV++ + Q ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 146 KDGVLISEGQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 203
>pdb|3PBA|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Monosulfate Tetrabromo-Bisphenol A
(Monotbbpa)
pdb|3PBA|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Monosulfate Tetrabromo-Bisphenol A
(Monotbbpa)
pdb|3PO9|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tripropyltin
pdb|3PO9|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tripropyltin
Length = 286
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 95 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 152
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 153 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 202
>pdb|3PRG|A Chain A, Ligand Binding Domain Of Human Peroxisome Proliferator
Activated Receptor
Length = 278
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 235 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEK 294
+V I +A IPGF +L DQ L + E+ LA + + G + +
Sbjct: 93 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 152
Query: 295 --QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 153 FLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 194
>pdb|3T03|A Chain A, Crystal Structure Of Ppar Gamma Ligand Binding Domain In
Complex With A Novel Partial Agonist Gq-16
pdb|3T03|B Chain B, Crystal Structure Of Ppar Gamma Ligand Binding Domain In
Complex With A Novel Partial Agonist Gq-16
Length = 284
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 93 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 150
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 151 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 200
>pdb|3VN2|A Chain A, Crystal Structure Of Ppargamma Complexed With Telmisartan
Length = 285
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 94 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 151
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 152 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 201
>pdb|4PRG|A Chain A, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|4PRG|B Chain B, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|4PRG|C Chain C, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|4PRG|D Chain D, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|1PRG|A Chain A, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|1PRG|B Chain B, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|2QMV|A Chain A, High Resolution Structure Of Peroxisone
Proliferation-Activated Receptor Gamma And
Characterisation Of Its Interaction With The Co-
Activator Transcriptional Intermediary Factor 2
Length = 270
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 80 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 137
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 138 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 187
>pdb|1A28|A Chain A, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|1A28|B Chain B, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|2OVH|A Chain A, Progesterone Receptor With Bound Asoprisnil And A Peptide
From The Co-Repressor Smrt
pdb|2OVM|A Chain A, Progesterone Receptor With Bound Asoprisnil And A Peptide
From The Co-Repressor Ncor
pdb|3HQ5|A Chain A, Progesterone Receptor Bound To An Alkylpyrrolidine Ligand.
pdb|3HQ5|B Chain B, Progesterone Receptor Bound To An Alkylpyrrolidine Ligand
Length = 256
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLEKQQCQR 299
++ +PGF +L +DQ L Q + + L V L +R+ L F ++L +Q+ +
Sbjct: 55 WSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKE 114
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
S + + Q +++ F C+ L L+
Sbjct: 115 SSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLL 150
>pdb|3KBA|A Chain A, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
pdb|3KBA|B Chain B, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
Length = 253
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLEKQQCQR 299
++ +PGF +L +DQ L Q + + L V L +R+ L F ++L +Q+ +
Sbjct: 52 WSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKE 111
Query: 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
S + + Q +++ F C+ L L+
Sbjct: 112 SSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLL 147
>pdb|3U9Q|A Chain A, Ligand Binding Domain Of Ppargamma Complexed With Decanoic
Acid And Pgc-1a Peptide
Length = 269
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 79 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 136
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 137 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 186
>pdb|2PRG|A Chain A, Ligand-Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|2PRG|B Chain B, Ligand-Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|2F4B|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With An Agonist
pdb|2F4B|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With An Agonist
pdb|2FVJ|A Chain A, A Novel Anti-adipogenic Partial Agonist Of Peroxisome
Proliferator- Activated Receptor-gamma (pparg) Recruits
Pparg-coactivator-1 Alpha (pgc1a) But Potentiates
Insulin Signaling In Vitro
pdb|2G0G|A Chain A, Structure-based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-ray
Crystallography And In Vitro/in Vivo Biological
Activities
pdb|2G0G|B Chain B, Structure-based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-ray
Crystallography And In Vitro/in Vivo Biological
Activities
pdb|2G0H|A Chain A, Structure-Based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-Ray
Crystallography And In VitroIN VIVO BIOLOGICAL
ACTIVITIES
pdb|2G0H|B Chain B, Structure-Based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-Ray
Crystallography And In VitroIN VIVO BIOLOGICAL
ACTIVITIES
pdb|2ATH|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma Im Complex With An Agonist
pdb|2ATH|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma Im Complex With An Agonist
pdb|2GTK|A Chain A, Structure-Based Design Of Indole Propionic Acids As Novel
Pparag Co-Agonists
pdb|2HWQ|A Chain A, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2HWQ|B Chain B, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2HWR|A Chain A, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2HWR|B Chain B, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2Q8S|A Chain A, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
AGONIST
pdb|2Q8S|B Chain B, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
AGONIST
pdb|3G9E|A Chain A, Aleglitaar. A New. Potent, And Balanced Dual PparaG
AGONIST For The Treatment Of Type Ii Diabetes
pdb|3IA6|A Chain A, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
Agonist
pdb|3IA6|B Chain B, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
Agonist
pdb|3FEJ|A Chain A, Design And Biological Evaluation Of Novel, Balanced Dual
PparaG AGONISTS
pdb|3GBK|A Chain A, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With A Potent And Selective Agonist
pdb|3GBK|B Chain B, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With A Potent And Selective Agonist
pdb|3NOA|A Chain A, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complex With A Potency Improved Agonist
pdb|3NOA|B Chain B, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complex With A Potency Improved Agonist
pdb|3QT0|A Chain A, Revealing A Steroid Receptor Ligand As A Unique Ppargamma
Agonist
Length = 271
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QF S+ +V I +A IPGF +L DQ L + E+ LA + +
Sbjct: 80 QFRSV--EAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISE 137
Query: 287 CNGVVLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G + + + ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 138 GQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 187
>pdb|3CWD|A Chain A, Molecular Recognition Of Nitro-Fatty Acids By Ppar Gamma
pdb|3CWD|B Chain B, Molecular Recognition Of Nitro-Fatty Acids By Ppar Gamma
Length = 270
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 235 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEK 294
+V I +A IPGF +L DQ L + E+ LA + + G + +
Sbjct: 85 AVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTRE 144
Query: 295 --QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ ++ FG D++ EF + +E+D S A A+ ++
Sbjct: 145 FLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 186
>pdb|1R1K|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO PONASTERONE A
pdb|1R20|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO THE SYNTHETIC AGONIST
BYI06830
pdb|2R40|A Chain A, Crystal Structure Of 20e Bound Ecr/usp
pdb|3IXP|A Chain A, Crystal Structure Of The Ecdysone Receptor Bound To
Byi08346
Length = 263
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
+A IP FS L EDQ LL + + EL + +A+R+
Sbjct: 60 WARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRS 95
>pdb|1G2N|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Ultraspiracle Protein Usp, The Ortholog Of Rxrs In
Insects
Length = 264
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 242 FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
+A IP FS L EDQ LL + + EL + +A+R+
Sbjct: 61 WARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRS 96
>pdb|1F61|A Chain A, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F61|B Chain B, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F8M|A Chain A, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|B Chain B, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|C Chain C, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|D Chain D, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
Length = 429
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 189 SDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLL-----TTSVDVIRHFA 243
SD+ + DQ + + E FYR N +EP IA + F L+ T ++ R F+
Sbjct: 240 SDVDERDQPFITGERTREGFYRTKNGIEPCIARAKAYAPFADLIWMETGTPDLEAARQFS 299
Query: 244 DKI 246
+ +
Sbjct: 300 EAV 302
>pdb|3P0U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
pdb|3P0U|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
Length = 249
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 16/106 (15%)
Query: 241 HFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS 300
H+A IP F L ++ L ++ ELF L LA + I V Q S
Sbjct: 52 HWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIV----NHLQNS 107
Query: 301 FGDDWLNA------------ILEFCQSLHLMEIDISAFACLCALTL 334
+D L+ + EFC S+ ++ID +A L A+ L
Sbjct: 108 IQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 153
>pdb|1F8I|A Chain A, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|B Chain B, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|C Chain C, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|D Chain D, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
Length = 429
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 189 SDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLL-----TTSVDVIRHFA 243
SD+ + DQ + + E FYR N +EP IA + F L+ T ++ R F+
Sbjct: 240 SDVDERDQPFITGERTREGFYRTKNGIEPCIARAKAYAPFADLIWMETGTPDLEAARQFS 299
Query: 244 DKI 246
+ +
Sbjct: 300 EAV 302
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated
Protein, Gabarap
Length = 119
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 203 ASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ 262
AS++ Y+E +P E +E EKI++ Y V VI +K P + + D++
Sbjct: 1 ASMKFVYKEEHPFEKRRSEGEKIRKKYP---DRVPVI---VEKAPK-ARIGDLDKKKYLV 53
Query: 263 SASLEL----FVLRLAYRTRAEDTKLIFCNGVV 291
+ L + F++R RAED F N V+
Sbjct: 54 PSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVI 86
>pdb|3ET1|A Chain A, Structure Of Pparalpha With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
pdb|3ET1|B Chain B, Structure Of Pparalpha With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 291
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 234 TSVDVIRH---FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
TSV+ + FA IPGF++L DQ L + E L+ + + + NG
Sbjct: 102 TSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGF 161
Query: 291 VLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
+ + + ++ F D + +F + +E+D S + A
Sbjct: 162 ITREFLKSLRKPFC-DIMEPKFDFAMKFNALELDDSDISLFVA 203
>pdb|3SP6|A Chain A, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
Length = 285
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 234 TSVDVIRH---FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
TSV+ + FA IPGF++L DQ L + E L+ + + + NG
Sbjct: 96 TSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGF 155
Query: 291 VLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
+ + + ++ F D + +F + +E+D S + A
Sbjct: 156 ITREFLKSLRKPFC-DIMEPKFDFAMKFNALELDDSDISLFVA 197
>pdb|3UAK|A Chain A, Crystal Structure Of De Novo Designed Cysteine Esterase
Ech14, Northeast Structural Genomics Consortium Target
Or54
pdb|3UAK|B Chain B, Crystal Structure Of De Novo Designed Cysteine Esterase
Ech14, Northeast Structural Genomics Consortium Target
Or54
Length = 406
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 182 ADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH 241
AD I G +DL + D+ + L L+Y E + P + +K +Q+ LL +
Sbjct: 10 ADPIYGLADLFRADERPGKINLGLALYYDETGKI-PVLTSVKKAEQY--LLENETTKLYL 66
Query: 242 FADKIPGFSDLCKEDQELLFQSAS 265
D IP F QELLF S
Sbjct: 67 GIDGIPEFGRCT---QELLFGKGS 87
>pdb|1I7G|A Chain A, Crystal Structure Of The Ligand Binding Domain From Human
Ppar-Alpha In Complex With The Agonist Az 242
Length = 287
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 234 TSVDVIRH---FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
TSV+ + FA IPGF++L DQ L + E L+ + + + NG
Sbjct: 98 TSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGF 157
Query: 291 VLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
+ + + ++ F D + +F + +E+D S + A
Sbjct: 158 ITREFLKSLRKPFC-DIMEPKFDFAMKFNALELDDSDISLFVA 199
>pdb|2REW|A Chain A, Crystal Structure Of Pparalpha Ligand Binding Domain With
Bms-631707
pdb|3KDT|A Chain A, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-(Methoxycarbonyl)glycine
pdb|3KDT|B Chain B, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-(Methoxycarbonyl)glycine
pdb|3KDU|A Chain A, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-((4-
Methylphenoxy)carbonyl)gl
pdb|3KDU|B Chain B, Crystal Structure Of Peroxisome
Proliferator-Activatedecepto (Pparalpha) Complex With
N-3-((2-(4-Chlorophenyl)-5-Methyl-
Oxazol-4-Yl)methoxy)benzyl)-N-((4-
Methylphenoxy)carbonyl)gl
Length = 277
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 234 TSVDVIRH---FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
TSV+ + FA IPGF++L DQ L + E L+ + + + NG
Sbjct: 88 TSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGF 147
Query: 291 VLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
+ + + ++ F D + +F + +E+D S + A
Sbjct: 148 ITREFLKSLRKPFC-DIMEPKFDFAMKFNALELDDSDISLFVA 189
>pdb|1K7L|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|E Chain E, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide.
pdb|1K7L|G Chain G, The 2.5 Angstrom Resolution Crystal Structure Of The Human
Pparalpha Ligand Binding Domain Bound With Gw409544 And
A Co-Activator Peptide
Length = 288
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 234 TSVDVIRH---FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
TSV+ + FA IPGF++L DQ L + E L+ + + + NG
Sbjct: 99 TSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGF 158
Query: 291 VLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
+ + + ++ F D + +F + +E+D S + A
Sbjct: 159 ITREFLKSLRKPFC-DIMEPKFDFAMKFNALELDDSDISLFVA 200
>pdb|2ZNN|A Chain A, Human Pprr Alpha Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|3VI8|A Chain A, Human Pprr Alpha Ligand Binding Domain In Complex With A
Synthetic Agonist Aphm13
Length = 273
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 234 TSVDVIRH---FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
TSV+ + FA IPGF++L DQ L + E L+ + + + NG
Sbjct: 84 TSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGF 143
Query: 291 VLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
+ + + ++ F D + +F + +E+D S + A
Sbjct: 144 ITREFLKSLRKPFC-DIMEPKFDFAMKFNALELDDSDISLFVA 185
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated
Protein Gabarap
pdb|3D32|A Chain A, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3D32|B Chain B, Complex Of Gaba(a) Receptor-associated Protein (gabarap)
With A Synthetic Peptide
pdb|3DOW|A Chain A, Complex Structure Of Gaba Type A Receptor Associated
Protein And Its Binding Epitope On Calreticulin
Length = 119
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 203 ASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ 262
S++ Y+E +P E +E EKI++ Y V VI +K P + + D++
Sbjct: 1 GSMKFVYKEEHPFEKRRSEGEKIRKKYP---DRVPVI---VEKAPK-ARIGDLDKKKYLV 53
Query: 263 SASLEL----FVLRLAYRTRAEDTKLIFCNGVV 291
+ L + F++R RAED F N V+
Sbjct: 54 PSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVI 86
>pdb|2P54|A Chain A, A Crystal Structure Of Ppar Alpha Bound With Src1 Peptide
And Gw735
pdb|3FEI|A Chain A, Design And Biological Evaluation Of Novel, Balanced Dual
PparaG AGONISTS
Length = 267
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 234 TSVDVIRH---FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
TSV+ + FA IPGF++L DQ L + E L+ + + + NG
Sbjct: 78 TSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGF 137
Query: 291 VLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
+ + + ++ F D + +F + +E+D S + A
Sbjct: 138 ITREFLKSLRKPFC-DIMEPKFDFAMKFNALELDDSDISLFVA 179
>pdb|1KKQ|A Chain A, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|B Chain B, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|C Chain C, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
pdb|1KKQ|D Chain D, Crystal Structure Of The Human Ppar-Alpha Ligand-Binding
Domain In Complex With An Antagonist Gw6471 And A Smrt
Corepressor Motif
Length = 269
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 234 TSVDVIRH---FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
TSV+ + FA IPGF++L DQ L + E L+ + + + NG
Sbjct: 80 TSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGF 139
Query: 291 VLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
+ + + ++ F D + +F + +E+D S + A
Sbjct: 140 ITREFLKSLRKPFC-DIMEPKFDFAMKFNALELDDSDISLFVA 181
>pdb|3G8I|A Chain A, Aleglitazar, A New, Potent, And Balanced Ppar AlphaGAMMA
Agonist For The Treatment Of Type Ii Diabetes
Length = 270
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 234 TSVDVIRH---FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
TSV+ + FA IPGF++L DQ L + E L+ + + + NG
Sbjct: 81 TSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGF 140
Query: 291 VLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
+ + + ++ F D + +F + +E+D S + A
Sbjct: 141 ITREFLKSLRKPFC-DIMEPKFDFAMKFNALELDDSDISLFVA 182
>pdb|2NPA|A Chain A, The Crystal Structure Of The Human Pparaplpha Ligand
Binding Domain In Complex With A A-Hydroxyimino
Phenylpropanoic Acid
pdb|2NPA|C Chain C, The Crystal Structure Of The Human Pparaplpha Ligand
Binding Domain In Complex With A A-Hydroxyimino
Phenylpropanoic Acid
Length = 270
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 234 TSVDVIRH---FADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGV 290
TSV+ + FA IPGF++L DQ L + E L+ + + + NG
Sbjct: 81 TSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGF 140
Query: 291 VLEK--QQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCA 331
+ + + ++ F D + +F + +E+D S + A
Sbjct: 141 ITREFLKSLRKPFC-DIMEPKFDFAMKFNALELDDSDISLFVA 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,266,216
Number of Sequences: 62578
Number of extensions: 291673
Number of successful extensions: 1281
Number of sequences better than 100.0: 344
Number of HSP's better than 100.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 814
Number of HSP's gapped (non-prelim): 585
length of query: 335
length of database: 14,973,337
effective HSP length: 99
effective length of query: 236
effective length of database: 8,778,115
effective search space: 2071635140
effective search space used: 2071635140
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)