Query psy2636
Match_columns 335
No_of_seqs 203 out of 1613
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 21:14:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dzy_A Retinoic acid receptor 100.0 1.1E-56 3.9E-61 412.8 11.9 245 38-335 135-381 (467)
2 3dzy_D Peroxisome proliferator 100.0 3.4E-53 1.2E-57 385.9 18.9 282 33-335 43-335 (419)
3 1cit_A NGFI-B, protein (orphan 100.0 2.9E-41 9.8E-46 235.0 2.3 87 42-128 2-88 (89)
4 2ebl_A COUP transcription fact 100.0 2.3E-40 7.9E-45 230.1 2.2 80 39-118 6-85 (89)
5 2han_A Protein ultraspiracle; 100.0 1.4E-40 4.9E-45 233.5 0.8 82 39-120 9-90 (93)
6 1dsz_B RXR-alpha, retinoic aci 100.0 1.6E-40 5.4E-45 229.2 0.8 81 39-119 4-84 (85)
7 3cbb_A HNF-4-alpha, hepatocyte 100.0 2.2E-40 7.4E-45 225.0 1.2 76 42-117 2-77 (78)
8 1hcq_A Protein (estrogen recep 100.0 3.4E-40 1.2E-44 227.0 2.1 80 38-117 2-81 (84)
9 1lo1_A Steroid hormone recepto 100.0 2.2E-40 7.6E-45 234.5 0.5 87 39-125 3-89 (98)
10 1dsz_A RAR-alpha, retinoic aci 100.0 4.9E-40 1.7E-44 227.6 1.2 81 40-120 4-84 (86)
11 1ynw_B Retinoic acid receptor 100.0 9.6E-40 3.3E-44 231.7 1.7 82 40-121 3-84 (99)
12 1a6y_A Orphan nuclear receptor 100.0 2.6E-39 9.1E-44 227.5 0.9 82 39-120 6-88 (94)
13 2a66_A Orphan nuclear receptor 100.0 3.3E-39 1.1E-43 234.0 1.0 84 39-122 8-91 (113)
14 2han_B Ecdysone receptor; tran 100.0 5.8E-39 2E-43 236.0 0.5 83 36-118 4-86 (119)
15 1kb2_A Vitamin D3 receptor; VD 100.0 3.2E-39 1.1E-43 233.6 -2.4 79 40-118 6-84 (110)
16 4hn5_A Glucocorticoid receptor 100.0 2.2E-38 7.5E-43 230.8 1.2 79 39-117 28-106 (117)
17 2nll_B Protein (thyroid hormon 100.0 3.1E-38 1E-42 226.0 0.9 79 40-118 1-81 (103)
18 1r4i_A Androgen receptor; AR, 100.0 5E-38 1.7E-42 225.1 0.8 80 38-117 5-84 (105)
19 3g9m_A Glucocorticoid receptor 100.0 3.5E-38 1.2E-42 221.2 -0.3 78 40-117 2-79 (90)
20 1lbd_A RXR_LBD, retinoid X rec 99.9 5.9E-27 2E-31 203.5 13.6 111 224-335 84-196 (282)
21 1ovl_A Orphan nuclear receptor 99.9 1.4E-26 4.8E-31 199.9 12.7 115 220-335 71-185 (271)
22 3v3e_B Nuclear receptor subfam 99.9 7.9E-25 2.7E-29 186.6 14.2 116 219-335 48-163 (257)
23 1xdk_B RAR-beta, retinoic acid 99.9 4.2E-24 1.4E-28 186.9 15.4 114 221-335 69-183 (303)
24 2lze_A A primordial catalytic 99.9 4.3E-25 1.5E-29 151.5 2.7 64 49-114 13-76 (87)
25 1pdu_A DHR38, nuclear hormone 99.9 4.3E-23 1.5E-27 174.8 14.1 116 219-335 43-158 (244)
26 3cqv_A Nuclear receptor subfam 99.9 1.1E-22 3.6E-27 167.5 13.4 116 219-335 16-132 (199)
27 1fcy_A RAR-gamma-1, retinoic a 99.9 5E-22 1.7E-26 167.9 14.8 114 221-335 42-156 (236)
28 3k6p_A Steroid hormone recepto 99.9 6E-22 2E-26 168.4 14.7 114 221-335 46-160 (248)
29 2nxx_E Ecdysone receptor (ECR, 99.9 8.7E-22 3E-26 167.5 15.6 113 222-335 51-164 (248)
30 2ocf_A Estrogen receptor; estr 99.9 1.4E-21 4.8E-26 169.9 17.1 115 220-335 41-157 (298)
31 1xpc_A Estrogen receptor; nucl 99.9 9.7E-22 3.3E-26 167.4 15.8 114 221-335 33-148 (248)
32 1z5x_E Ecdysone receptor ligan 99.9 1.2E-21 4E-26 171.2 16.0 115 220-335 113-228 (310)
33 3oll_A Estrogen receptor beta; 99.9 1E-21 3.4E-26 166.5 14.4 115 220-335 30-146 (240)
34 2e2r_A Estrogen-related recept 99.9 1.5E-21 5.1E-26 165.6 15.2 115 220-335 45-160 (244)
35 2r40_D Ecdysone receptor, 20-h 99.9 8.5E-22 2.9E-26 169.1 13.7 112 223-335 68-180 (266)
36 3kmr_A Retinoic acid receptor 99.9 9.8E-22 3.4E-26 168.5 13.6 115 220-335 65-180 (266)
37 1yye_A ER-beta, estrogen recep 99.9 1.3E-21 4.3E-26 168.1 14.2 115 220-335 28-144 (268)
38 1nq7_A Nuclear receptor ROR-be 99.9 1.2E-21 3.9E-26 166.3 13.7 114 220-335 47-161 (244)
39 3n00_A REV-ERBA-alpha; reverba 99.9 5.6E-22 1.9E-26 167.9 11.1 115 220-335 62-177 (245)
40 3vhv_A Mineralocorticoid recep 99.9 2.1E-21 7.1E-26 166.1 14.7 116 219-335 36-154 (260)
41 3ltx_A Estrogen receptor; cons 99.9 2.4E-21 8.2E-26 164.3 14.8 115 220-335 33-149 (243)
42 3l0l_A Nuclear receptor ROR-ga 99.9 2.6E-21 8.9E-26 164.4 14.9 115 220-335 53-167 (248)
43 3ilz_A Thyroid hormone recepto 99.9 1.6E-21 5.6E-26 167.5 13.8 115 220-335 67-182 (267)
44 1l2j_A Estrogen receptor beta; 99.9 8.5E-22 2.9E-26 169.5 12.0 115 220-335 56-172 (271)
45 3ipq_A Oxysterols receptor LXR 99.9 1.7E-21 6E-26 168.7 13.9 116 220-335 85-201 (283)
46 1n83_A Nuclear receptor ROR-al 99.9 4.7E-21 1.6E-25 164.7 15.5 114 220-335 62-176 (270)
47 3b0t_A Vitamin D3 receptor; nu 99.9 1.7E-21 5.8E-26 166.5 12.6 113 223-335 56-170 (254)
48 3vhu_A Mineralocorticoid recep 99.9 4.6E-21 1.6E-25 166.2 15.3 116 219-335 70-188 (294)
49 1t7r_A Androgen receptor; nucl 99.9 6.7E-21 2.3E-25 163.8 16.2 116 220-335 46-163 (269)
50 3vi8_A Peroxisome proliferator 99.9 2.3E-21 8E-26 166.5 12.8 115 220-335 73-189 (273)
51 1g2n_A Ultraspiracle protein; 99.9 1.1E-20 3.8E-25 162.3 16.7 112 223-335 42-173 (264)
52 3mnp_A Glucocorticoid receptor 99.9 5.4E-21 1.8E-25 163.5 14.5 115 220-335 39-156 (261)
53 2o4j_A Vitamin D3 receptor; nu 99.9 2.6E-21 8.9E-26 168.2 12.0 115 221-335 57-173 (292)
54 1ymt_A Steroidogenic factor 1; 99.9 4E-21 1.4E-25 163.4 12.3 111 225-335 47-162 (246)
55 1sqn_A PR, progesterone recept 99.8 5.5E-21 1.9E-25 163.6 11.8 115 220-335 38-155 (261)
56 2iz2_A FTZ-F1 alpha, nuclear h 99.8 2.4E-21 8.1E-26 164.2 9.3 114 221-335 44-160 (243)
57 3plz_A FTZ-F1 related protein; 99.8 6.6E-21 2.3E-25 162.7 12.0 114 222-335 55-173 (257)
58 1xvp_B Orphan nuclear receptor 99.8 1.3E-20 4.4E-25 160.3 13.3 115 220-335 51-166 (246)
59 2nxx_A Ultraspiracle (USP, NR2 99.8 5.5E-21 1.9E-25 161.4 10.4 113 223-335 37-150 (235)
60 2hc4_A Vitamin D receptor; alp 99.8 2.9E-20 9.8E-25 162.2 14.4 115 221-335 100-216 (302)
61 1nrl_A Orphan nuclear receptor 99.8 4.7E-21 1.6E-25 167.5 8.2 113 222-335 119-231 (316)
62 3tx7_B Nuclear receptor subfam 99.8 1.1E-20 3.9E-25 167.2 9.4 114 222-335 150-268 (352)
63 2p1t_A Retinoic acid receptor 99.8 7.6E-20 2.6E-24 155.0 13.3 111 224-335 42-154 (240)
64 3up3_A Acedaf-12; ligand bindi 99.8 2.8E-20 9.6E-25 157.1 8.6 109 227-335 45-160 (243)
65 1hg4_A Ultraspiracle; nuclear 99.8 1.4E-19 4.8E-24 156.8 13.0 113 223-335 47-187 (279)
66 1osh_A BIle acid receptor; nuc 99.8 9.9E-20 3.4E-24 153.5 9.5 111 221-335 40-151 (232)
67 3u9q_A Peroxisome proliferator 99.8 6.5E-19 2.2E-23 151.0 12.7 103 230-335 80-186 (269)
68 3cjw_A COUP transcription fact 99.8 4.3E-19 1.5E-23 150.7 11.0 109 226-335 40-151 (244)
69 3f5c_B Nuclear receptor subfam 99.8 1.9E-19 6.3E-24 154.2 8.8 111 225-335 49-185 (268)
70 1pzl_A Hepatocyte nuclear fact 99.8 4.4E-19 1.5E-23 150.2 10.0 110 225-335 43-154 (237)
71 3p0u_A Nuclear receptor subfam 99.8 1.1E-18 3.8E-23 148.3 10.0 110 226-335 37-154 (249)
72 3gyt_A Nuclear hormone recepto 99.7 6.8E-18 2.3E-22 141.9 8.6 106 227-335 45-159 (244)
73 2lze_A A primordial catalytic 92.8 0.096 3.3E-06 35.6 3.4 19 38-56 15-33 (87)
74 1wfl_A Zinc finger protein 216 90.3 0.59 2E-05 30.3 4.9 24 40-67 25-48 (74)
75 1weu_A Inhibitor of growth fam 83.9 4.4 0.00015 27.6 6.7 22 39-64 35-58 (91)
76 2ku3_A Bromodomain-containing 80.9 1.5 5.2E-05 28.4 3.3 54 38-102 14-67 (71)
77 2yqp_A Probable ATP-dependent 78.6 2.6 8.9E-05 25.6 3.4 16 40-61 19-34 (60)
78 2l43_A N-teminal domain from h 74.6 2.9 9.9E-05 28.4 3.4 54 38-102 23-76 (88)
79 2e6r_A Jumonji/ARID domain-con 73.5 8.1 0.00028 26.3 5.5 55 39-104 15-69 (92)
80 2lri_C Autoimmune regulator; Z 72.8 3.3 0.00011 26.3 3.1 27 39-70 11-37 (66)
81 1weo_A Cellulose synthase, cat 71.8 2.9 0.0001 28.1 2.7 31 32-64 8-42 (93)
82 1wev_A Riken cDNA 1110020M19; 71.5 1.5 5.1E-05 29.8 1.3 57 38-102 14-73 (88)
83 2yql_A PHD finger protein 21A; 65.2 5.5 0.00019 24.2 2.9 26 40-70 9-34 (56)
84 3v3e_B Nuclear receptor subfam 64.3 6.9 0.00024 32.4 4.3 46 160-205 50-95 (257)
85 2rsd_A E3 SUMO-protein ligase 64.0 8.2 0.00028 24.5 3.7 50 41-102 11-66 (68)
86 1we9_A PHD finger family prote 64.0 7.6 0.00026 24.2 3.5 54 39-101 5-58 (64)
87 2vpb_A Hpygo1, pygopus homolog 60.9 3.5 0.00012 26.1 1.4 33 38-71 6-39 (65)
88 1wen_A Inhibitor of growth fam 60.1 12 0.00039 24.1 3.8 23 38-64 14-38 (71)
89 3j21_g 50S ribosomal protein L 59.8 3.3 0.00011 24.8 1.1 22 40-64 14-35 (51)
90 2jmi_A Protein YNG1, ING1 homo 59.4 4.9 0.00017 27.3 2.0 22 39-64 25-46 (90)
91 1fp0_A KAP-1 corepressor; PHD 59.3 9.9 0.00034 25.7 3.5 52 36-101 21-72 (88)
92 1wee_A PHD finger family prote 58.2 7.1 0.00024 25.2 2.6 51 38-101 14-66 (72)
93 2crw_A ARF GAP 3, ADP-ribosyla 57.5 2.4 8.1E-05 31.9 0.2 32 39-70 28-62 (149)
94 1wg2_A Zinc finger (AN1-like) 56.7 12 0.00043 23.4 3.4 23 41-67 16-38 (64)
95 2yt5_A Metal-response element- 56.6 6.5 0.00022 24.7 2.2 55 39-101 5-61 (66)
96 2crr_A Stromal membrane-associ 56.6 2.1 7.1E-05 32.0 -0.3 32 39-70 28-62 (141)
97 2iqj_A Stromal membrane-associ 56.5 1.8 6E-05 32.0 -0.7 32 39-70 26-60 (134)
98 1wem_A Death associated transc 55.9 13 0.00046 24.0 3.7 28 40-70 16-43 (76)
99 2olm_A Nucleoporin-like protei 55.3 2 6.9E-05 32.0 -0.5 32 39-70 24-58 (140)
100 3dfx_A Trans-acting T-cell-spe 55.1 4.7 0.00016 25.3 1.2 31 40-70 7-41 (63)
101 2puy_A PHD finger protein 21A; 54.2 7.5 0.00026 24.0 2.1 49 40-102 5-53 (60)
102 2vut_I AREA, nitrogen regulato 53.8 2.5 8.7E-05 24.3 -0.1 29 42-70 3-35 (43)
103 1wew_A DNA-binding family prot 53.7 14 0.00048 24.1 3.5 28 39-70 15-45 (78)
104 2owa_A Arfgap-like finger doma 53.6 2.1 7.1E-05 31.8 -0.7 32 39-70 35-69 (138)
105 1d4u_A Nucleotide excision rep 53.2 6.3 0.00022 27.9 1.8 24 42-65 7-34 (111)
106 2pv0_B DNA (cytosine-5)-methyl 52.9 3.9 0.00013 36.0 0.8 71 39-111 49-129 (386)
107 2p57_A GTPase-activating prote 52.8 2.3 7.9E-05 31.7 -0.5 32 39-70 36-70 (144)
108 1wfp_A Zinc finger (AN1-like) 52.2 31 0.0011 22.3 4.8 25 39-67 24-48 (74)
109 3dwd_A ADP-ribosylation factor 51.7 3 0.0001 31.1 -0.0 31 39-69 37-70 (147)
110 1xwh_A Autoimmune regulator; P 51.4 9.2 0.00031 24.1 2.2 49 39-101 7-55 (66)
111 3j20_P 30S ribosomal protein S 51.4 5.5 0.00019 24.3 1.1 24 40-63 18-42 (56)
112 1gnf_A Transcription factor GA 50.8 4.6 0.00016 23.6 0.6 30 41-70 5-38 (46)
113 2ro1_A Transcription intermedi 50.7 15 0.00052 28.8 3.9 47 41-101 3-49 (189)
114 3sub_A ADP-ribosylation factor 50.1 2.6 8.8E-05 32.1 -0.7 30 40-69 22-54 (163)
115 1x64_A Alpha-actinin-2 associa 49.4 38 0.0013 22.4 5.3 25 40-64 25-58 (89)
116 1wff_A Riken cDNA 2810002D23 p 49.2 40 0.0014 22.4 5.1 26 39-67 24-49 (85)
117 2e2z_A TIM15; protein import, 47.5 3 0.0001 28.7 -0.6 25 42-66 15-47 (100)
118 1mm2_A MI2-beta; PHD, zinc fin 45.9 14 0.00049 22.8 2.5 27 39-70 8-34 (61)
119 3iz6_N 40S ribosomal protein S 45.3 6.6 0.00023 24.0 0.8 24 40-63 18-42 (56)
120 2k16_A Transcription initiatio 44.1 8.8 0.0003 24.9 1.3 30 39-70 17-46 (75)
121 1f62_A Transcription factor WS 43.3 12 0.00039 22.1 1.7 27 42-70 2-28 (51)
122 3u5n_A E3 ubiquitin-protein li 43.1 15 0.0005 29.3 2.8 26 40-70 7-32 (207)
123 2kae_A GATA-type transcription 42.2 6.6 0.00023 25.3 0.4 31 39-70 7-43 (71)
124 3kv5_D JMJC domain-containing 41.8 8.6 0.00029 35.2 1.3 53 40-102 37-89 (488)
125 1x62_A C-terminal LIM domain p 40.7 37 0.0013 21.8 4.1 25 41-65 16-49 (79)
126 1uw0_A DNA ligase III; DNA rep 40.3 18 0.00061 25.9 2.5 20 244-263 74-93 (117)
127 2ri7_A Nucleosome-remodeling f 40.3 5.3 0.00018 30.9 -0.3 53 39-102 7-60 (174)
128 2l5u_A Chromodomain-helicase-D 40.2 18 0.0006 22.4 2.2 27 39-70 10-36 (61)
129 1v9x_A Poly (ADP-ribose) polym 40.2 15 0.00052 26.1 2.1 21 243-263 69-89 (114)
130 2xb1_A Pygopus homolog 2, B-ce 39.7 13 0.00044 26.0 1.7 31 39-70 2-33 (105)
131 2xzm_N RPS29E; ribosome, trans 39.5 11 0.00037 22.9 1.1 26 38-63 15-41 (55)
132 1lv3_A Hypothetical protein YA 39.3 6.3 0.00021 25.1 -0.0 12 39-50 8-19 (68)
133 1x5v_A PCFK1; inhibitory cysti 38.6 2.1 7.1E-05 22.1 -1.8 21 84-104 8-30 (34)
134 2lbm_A Transcriptional regulat 37.7 4.4 0.00015 30.2 -1.0 31 40-70 14-53 (142)
135 3odc_A Poly [ADP-ribose] polym 37.6 12 0.00041 26.5 1.2 20 244-263 76-95 (111)
136 3u5c_d S36, YS29, 40S ribosoma 37.3 9 0.00031 23.4 0.5 24 40-63 18-42 (56)
137 3o47_A ADP-ribosylation factor 36.3 7.8 0.00027 33.4 0.1 32 39-70 36-70 (329)
138 2l4z_A DNA endonuclease RBBP8, 35.3 63 0.0022 23.0 4.9 27 40-66 61-97 (123)
139 4gat_A Nitrogen regulatory pro 34.8 11 0.00036 24.0 0.5 30 40-69 9-42 (66)
140 3o36_A Transcription intermedi 34.2 20 0.00067 27.9 2.2 48 40-101 4-51 (184)
141 3jyw_9 60S ribosomal protein L 34.2 22 0.00074 22.9 1.9 24 41-64 27-51 (72)
142 3od8_A Poly [ADP-ribose] polym 33.4 15 0.00051 26.2 1.2 19 245-263 90-108 (116)
143 1wfh_A Zinc finger (AN1-like) 33.3 54 0.0018 20.5 3.5 26 38-67 13-38 (64)
144 2vnf_A ING 4, P29ING4, inhibit 32.9 17 0.00058 22.4 1.3 21 40-64 10-32 (60)
145 2od1_A Protein CBFA2T1; zinc f 32.7 22 0.00076 21.8 1.8 20 40-65 13-32 (60)
146 2yqq_A Zinc finger HIT domain- 32.5 49 0.0017 20.1 3.2 19 41-65 13-31 (56)
147 2dar_A PDZ and LIM domain prot 32.2 68 0.0023 21.1 4.4 27 40-66 25-60 (90)
148 2dmj_A Poly (ADP-ribose) polym 32.1 21 0.00072 25.0 1.8 19 245-263 77-95 (106)
149 2dj8_A Protein CBFA2T1; zinc f 32.1 53 0.0018 20.0 3.5 20 40-65 15-34 (60)
150 1x4s_A Protein FON, zinc finge 32.0 22 0.00074 21.9 1.6 12 37-48 8-19 (59)
151 3a1b_A DNA (cytosine-5)-methyl 31.8 9.4 0.00032 28.9 -0.1 33 39-71 35-70 (159)
152 2jne_A Hypothetical protein YF 31.7 20 0.0007 24.4 1.5 29 39-71 31-62 (101)
153 2ll1_A U1-TRTX-SP1A; toxin; NM 31.2 2.9 9.8E-05 21.2 -2.0 8 97-104 24-31 (33)
154 3ql9_A Transcriptional regulat 31.1 10 0.00036 27.6 0.0 31 40-70 8-47 (129)
155 2dip_A Zinc finger SWIM domain 30.5 1.1E+02 0.0037 20.9 5.2 43 44-98 19-61 (98)
156 3o70_A PHD finger protein 13; 29.9 30 0.001 21.9 2.1 26 41-70 20-46 (68)
157 3asl_A E3 ubiquitin-protein li 29.8 21 0.00072 22.8 1.4 27 42-70 20-46 (70)
158 2lv9_A Histone-lysine N-methyl 29.7 84 0.0029 21.4 4.6 45 42-99 30-74 (98)
159 2yrc_A Protein transport prote 29.5 29 0.001 21.3 1.9 17 50-66 2-20 (59)
160 1ei0_A P8MTCP1; helix-turn-hel 29.3 16 0.00053 20.3 0.6 11 96-106 6-16 (38)
161 3jue_A Arfgap with coiled-coil 29.1 11 0.00038 33.0 -0.1 31 39-69 44-77 (368)
162 1dl6_A Transcription factor II 27.6 51 0.0017 20.1 2.8 26 41-66 12-39 (58)
163 2csz_A Synaptotagmin-like prot 26.8 46 0.0016 21.6 2.5 19 53-71 21-39 (76)
164 2fqh_A Hypothetical protein TA 26.7 28 0.00097 23.5 1.5 33 40-72 17-55 (109)
165 3izc_m 60S ribosomal protein R 26.6 25 0.00086 23.8 1.3 24 41-64 37-61 (92)
166 2fiy_A Protein FDHE homolog; F 25.8 21 0.00073 30.4 1.1 20 43-65 211-230 (309)
167 3ask_A E3 ubiquitin-protein li 25.8 54 0.0018 26.4 3.3 29 40-70 174-202 (226)
168 2k4x_A 30S ribosomal protein S 25.6 36 0.0012 20.5 1.8 26 39-64 17-43 (55)
169 2cs2_A Poly [ADP-ribose] polym 25.6 26 0.00088 25.7 1.3 20 244-263 84-103 (134)
170 3iz5_m 60S ribosomal protein L 25.3 27 0.00091 23.7 1.2 24 41-64 37-61 (92)
171 1p22_C Beta-catenin, Pro2286; 25.3 22 0.00075 17.7 0.6 11 50-60 14-24 (26)
172 2luv_A Integrin alpha-X; myris 31.1 15 0.00051 19.9 0.0 7 65-71 3-9 (35)
173 1pdu_A DHR38, nuclear hormone 24.7 54 0.0018 26.6 3.3 45 161-205 46-90 (244)
174 2d8q_A BLU protein, zinc finge 24.4 1E+02 0.0035 19.5 3.9 20 40-65 15-34 (70)
175 2jw6_A Deformed epidermal auto 24.1 31 0.0011 20.2 1.3 20 40-65 9-28 (52)
176 1vp6_A CNBD, cyclic-nucleotide 23.2 62 0.0021 22.8 3.1 30 235-264 5-34 (138)
177 3j21_i 50S ribosomal protein L 23.2 24 0.00083 23.4 0.7 25 41-65 36-61 (83)
178 3lju_X ARF-GAP with dual PH do 23.1 15 0.0005 32.5 -0.5 32 39-70 33-67 (386)
179 3ltx_A Estrogen receptor; cons 23.1 89 0.0031 25.2 4.4 43 163-205 37-79 (243)
180 2h7b_A Core-binding factor, ML 22.5 1.1E+02 0.0038 21.1 3.9 28 301-328 23-50 (105)
181 2d74_B Translation initiation 22.4 50 0.0017 24.7 2.4 31 41-73 105-139 (148)
182 3lqh_A Histone-lysine N-methyl 22.3 36 0.0012 26.5 1.6 30 41-70 3-34 (183)
183 1ffk_W Ribosomal protein L37AE 22.1 25 0.00085 22.7 0.6 26 40-65 27-53 (73)
184 2enz_A NPKC-theta, protein kin 21.7 74 0.0025 19.6 2.8 27 40-66 23-49 (65)
185 3j20_Y 30S ribosomal protein S 21.2 28 0.00097 20.5 0.7 26 39-64 18-44 (50)
186 2yrk_A Zinc finger homeobox pr 21.1 84 0.0029 18.8 2.7 12 40-51 13-24 (55)
187 3vi8_A Peroxisome proliferator 20.9 78 0.0027 26.2 3.6 40 166-205 80-119 (273)
188 1u5k_A Hypothetical protein; O 20.6 33 0.0011 27.9 1.2 9 41-49 151-159 (244)
189 3ocp_A PRKG1 protein; serine/t 20.6 1.1E+02 0.0037 21.6 4.0 26 238-263 20-45 (139)
190 2e6s_A E3 ubiquitin-protein li 20.6 40 0.0014 21.9 1.4 28 40-69 26-53 (77)
191 2p6v_A Transcription initiatio 20.5 1E+02 0.0035 21.6 3.4 27 302-328 39-65 (114)
No 1
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=100.00 E-value=1.1e-56 Score=412.82 Aligned_cols=245 Identities=30% Similarity=0.618 Sum_probs=173.7
Q ss_pred CCCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeeeecc
Q psy2636 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS 117 (335)
Q Consensus 38 ~~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~ 117 (335)
...+.|.||||+|+|+||||.+|+|||+||||+|+++..|.|+++++|.|++..|++||+|||+||++|||++++||.+|
T Consensus 135 ~~~~~C~VCg~~a~g~hygv~sC~~Ck~FFrR~~~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r 214 (467)
T 3dzy_A 135 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 214 (467)
T ss_dssp --CEECTTTSSEECSEETTEECCHHHHHHHHHHHHTTCCCCCSSSSCCCCCSSSSSSCHHHHHHHHHHTTCCGGGCCCCS
T ss_pred CCCCcceeCCCCCCCCcCCCcchhhhhHhccccccCCCceeCCCCCCCCCCcccccccccchhhhhhhccccchhhhccc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCcchhhhhhcCCCCCCCCCCChhHHHHHHHhhcchhhhhhhcccCCCCCCCCCHHHHH
Q psy2636 118 LKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 197 (335)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~p~~~~l~~~~~~ 197 (335)
.+.++.... .. ....... ... ..+ .+...... ..+....+....
T Consensus 215 ~~~k~r~~~----~~-~~~~~~~---------------~~~-~~~---~ll~a~~~----------~e~~~~~~~~~~-- 258 (467)
T 3dzy_A 215 QRGKDRNEN----EV-ESTSSAN---------------EDM-PVE---RILEAELA----------VEPKTETYVEAN-- 258 (467)
T ss_dssp CCCCCCSCS----SC-TTSTTCS---------------CSS-CHH---HHHHHHHC------------------------
T ss_pred ccccccccc----cc-ccccccC---------------CCC-chh---hhhhhhhh----------hcccchhhhhhc--
Confidence 543321100 00 0000000 000 001 11110000 000000000000
Q ss_pred HHHhhhhhccccCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhh
Q psy2636 198 LLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277 (335)
Q Consensus 198 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~ 277 (335)
. . ..+. .....+..+.++....+..+|+|||+||+|.+|+.+||++|||++|+++++|+.|+++
T Consensus 259 --~-----~---~~~~------~~~~~~~~l~e~a~~~L~~vVeWAK~iP~F~~L~~~DQi~LLK~~w~elliL~~a~rs 322 (467)
T 3dzy_A 259 --M-----G---LNPS------SPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRS 322 (467)
T ss_dssp --------------------------CCTTHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --c-----c---CCCC------cccchHHHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 0 0 0000 0000011234445567788999999999999999999999999999999999999999
Q ss_pred ccCCCeEEeeCCeEeeHHhhhh-hhcHHHHHHHH-HHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 278 RAEDTKLIFCNGVVLEKQQCQR-SFGDDWLNAIL-EFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 278 ~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~-~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
....+.+++++|..+..+.... +++ .+.+.++ +|+.+|++|+||++||+||+||+||
T Consensus 323 ~~~~~~~ll~~g~~i~~~~~~~~~~~-~~~~~il~~lv~~l~~L~ld~~E~~lLkAIvLf 381 (467)
T 3dzy_A 323 IAVKDGILLATGLHVHRNSAHSAGVG-AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF 381 (467)
T ss_dssp SSSTTBCCCSSSCCCBTHHHHTTTCH-HHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHS
T ss_pred ccCCCceEecCCceechhhhhhhcch-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 8888888999999998876544 444 5555555 9999999999999999999999997
No 2
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=100.00 E-value=3.4e-53 Score=385.85 Aligned_cols=282 Identities=27% Similarity=0.457 Sum_probs=166.7
Q ss_pred CCCCCCCCCcccccCCCCCccccCCccccccccceecccccCCeee-cCCCCCCcccccccccccchhhHHHHhcCceee
Q psy2636 33 RPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRNRCQFCRFQKCLQVGMVKE 111 (335)
Q Consensus 33 ~~~~~~~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~-C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~ 111 (335)
.++.......|.||||+|+|+||||.+|+|||+||||+|+++..|. | +++|.|++..|++||+|||+||++|||+++
T Consensus 43 ~~~~~~~~~~C~vC~~~~~g~hygv~~C~~C~~FFrR~~~~~~~~~~c--~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~ 120 (419)
T 3dzy_D 43 EPSNSLMAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHN 120 (419)
T ss_dssp -------CCCCSSSCSCCCSBCSSSBCCHHHHHHHHHHHTTTCCCCCC--CSCCCCCTTGGGTCHHHHHHHHHHTTCCGG
T ss_pred CCCCCCCCCcCeECCCcCCCCccCcccchhhhHHHccchhcccccccc--cCCCCcccccCccchhhhHHHHhhcccchh
Confidence 3444456778999999999999999999999999999999999995 7 468999999999999999999999999999
Q ss_pred eeeeccccccCCCCCCCCCCCCCCCCCCCcch----hhhhhcCCCCCCCCCCChhHHHHHHHhhcchhhhhhhcccCCCC
Q psy2636 112 VVRTDSLKGRRGRLPSKPKSPQESPPSPPVSL----ITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 187 (335)
Q Consensus 112 ~Vq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~p~ 187 (335)
+||.+|.+...++..............+.... +..+..++... ........... +.......+.
T Consensus 121 ~vq~~R~~~~~k~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~a~~~~--~~~~~~~~~~~----------l~~~~~~~~p 188 (419)
T 3dzy_D 121 AIRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKS--FPLTKAKARAI----------LTGKTTDKSP 188 (419)
T ss_dssp GCCCSCCTTTTGGGSTTTTTSTTTTSCSTTHHHHHHHHHHHHHHHTT--CSSCHHHHHHH----------HHCCSSSCCC
T ss_pred heecccccccccccccccccccccCCCCchhhHHHHHHHHHHhhhcc--CCccchhcccc----------ccCCCCCCCC
Confidence 99988754332211100000000000111000 00000000000 00000000000 0000000000
Q ss_pred CCCCCHHHHHHHHhhhhhccccCCCCCCCCC--CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhH
Q psy2636 188 FSDLCKEDQELLFQSASLELFYREPNPLEPP--IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 265 (335)
Q Consensus 188 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~ 265 (335)
+.. .+...+... .....+....+.... ......+..+.......+..+|+|||+||+|.+|+.+||++|||++|
T Consensus 189 ~~~---~~~~~l~~a-e~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w 264 (419)
T 3dzy_D 189 FVI---YDMNSLMMG-EDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGV 264 (419)
T ss_dssp EEE---CSHHHHHCC-C----------------CHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTSCHHHHHHHHHHHH
T ss_pred ccc---ccchhhhhc-ccccccccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHH
Confidence 000 000000000 000000000000000 00111222233334456778999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccCCCeEEeeCCeE-eeHHhhh---hhhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 266 LELFVLRLAYRTRAEDTKLIFCNGVV-LEKQQCQ---RSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 266 ~~~~~l~~a~~~~~~~~~~~~~~g~~-~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+|+++|+.|..+.. +.+++.+|.. +..+.+. .+++ ++++.+++|+.+|++|+||++||+|||||+||
T Consensus 265 ~Ell~L~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~i~~f~~~l~~L~ld~~E~alLkAivLf 335 (419)
T 3dzy_D 265 HEIIYTMLASLMNK--DGVLISEGQGFMTREFLKSLRKPFG-DFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 335 (419)
T ss_dssp HHHHHHHHGGGBCS--SEEEEGGGTEEEEHHHHHSSSGGGS-GGGHHHHHHHHHHHHTCCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcC--CCceeecCcccccHHHHHhhhhhHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 99999999966543 4566666654 4555433 3455 78899999999999999999999999999997
No 3
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=100.00 E-value=2.9e-41 Score=235.02 Aligned_cols=87 Identities=90% Similarity=1.586 Sum_probs=82.9
Q ss_pred cccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeeeecccccc
Q psy2636 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGR 121 (335)
Q Consensus 42 ~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~~~~~ 121 (335)
+|.||||+|+|+||||+||+|||+||||+|+.+..|.|..+++|.|++..|+.||+|||+|||+|||++++||.|+...+
T Consensus 2 ~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~~~~~~ 81 (89)
T 1cit_A 2 RCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGR 81 (89)
T ss_dssp CCSSSCCCCCEEETTEEECHHHHHHHHHHHHHTCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHTTCCGGGSCCGGGTTC
T ss_pred CCeEeCCCCcceEeCccchhhhhhhceeeEEecceeeeccCCccccCCCCcccChhhhhHHHhHcCCCHHHeecccccCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CCCCCCC
Q psy2636 122 RGRLPSK 128 (335)
Q Consensus 122 ~~~~~~~ 128 (335)
+++.|++
T Consensus 82 r~r~p~~ 88 (89)
T 1cit_A 82 RGRLPSK 88 (89)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 8777654
No 4
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=100.00 E-value=2.3e-40 Score=230.12 Aligned_cols=80 Identities=50% Similarity=1.091 Sum_probs=76.0
Q ss_pred CCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeeeeccc
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSL 118 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~~ 118 (335)
+..+|.||||+|+|+||||++|+|||+||||+|+.+..|.|+.+++|.|++..|+.||+|||+|||+|||++++||.++.
T Consensus 6 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 85 (89)
T 2ebl_A 6 SGIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGSG 85 (89)
T ss_dssp SSCBCTTTCSBCCSEETTEECCHHHHHHHHHHHTTTCCCCCSSCSCCCCCSSSSSCCSHHHHHHHHHHTCCHHHHSCSCC
T ss_pred CCCCCcEeCCCCcceEeCchhhHHhhhhhheeeeeccceecccCccCCcCccCccccccchHHHhhhccCCHHHcccCCC
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999998764
No 5
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=100.00 E-value=1.4e-40 Score=233.48 Aligned_cols=82 Identities=54% Similarity=1.140 Sum_probs=75.5
Q ss_pred CCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeeeeccc
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSL 118 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~~ 118 (335)
...+|.||||+|+|+||||+||+|||+||||+|+.+..|.|+.+++|.|++..|+.||+|||+|||+|||++++||.++.
T Consensus 9 ~~~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 88 (93)
T 2han_A 9 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQ 88 (93)
T ss_dssp -CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHHTCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHHTCCGGGSCCCC-
T ss_pred CCCCCcEeCCCCcCeecCcchhHHHHHHHHhhhccccCcCcCCCCcCCcCCCCCccCccccHHHHhHhCCCHHHhhhccC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred cc
Q psy2636 119 KG 120 (335)
Q Consensus 119 ~~ 120 (335)
..
T Consensus 89 ~~ 90 (93)
T 2han_A 89 GI 90 (93)
T ss_dssp --
T ss_pred cc
Confidence 43
No 6
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=100.00 E-value=1.6e-40 Score=229.23 Aligned_cols=81 Identities=54% Similarity=1.189 Sum_probs=76.7
Q ss_pred CCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeeeeccc
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSL 118 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~~ 118 (335)
+..+|.||||+|+|+||||+||+|||+||||+|+.+..|.|+.+++|.|++..|+.||+|||+|||+|||++++||.++.
T Consensus 4 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 83 (85)
T 1dsz_B 4 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQ 83 (85)
T ss_dssp CCEECTTTCCEESSEETTEECCHHHHHHHHHHHHHTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCCCC
T ss_pred CCCCCCEeCCCCCceeeCccchHHHHHHHHHhhccccceeecccccccccccccccCcchhHHHHhHcCCCHHHhhcccC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred c
Q psy2636 119 K 119 (335)
Q Consensus 119 ~ 119 (335)
+
T Consensus 84 ~ 84 (85)
T 1dsz_B 84 R 84 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 7
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-40 Score=224.97 Aligned_cols=76 Identities=50% Similarity=1.173 Sum_probs=73.3
Q ss_pred cccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeeeecc
Q psy2636 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS 117 (335)
Q Consensus 42 ~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~ 117 (335)
+|.||||+|+|+||||+||+|||+||||+|+.+..|.|+.+++|.|++..|+.||+|||+|||+|||++++||.++
T Consensus 2 ~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R 77 (78)
T 3cbb_A 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNER 77 (78)
T ss_dssp BCTTTSSBCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTTTTTCHHHHHHHHHHHTCCGGGCCCC-
T ss_pred CCeEeCCCCCceEeCCcchhhhceeeeEEEecccCcccccccccCcCccccccChhhhhHHHhHcCCCHHHccccC
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999875
No 8
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=100.00 E-value=3.4e-40 Score=227.00 Aligned_cols=80 Identities=50% Similarity=1.058 Sum_probs=70.4
Q ss_pred CCCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeeeecc
Q psy2636 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS 117 (335)
Q Consensus 38 ~~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~ 117 (335)
++..+|.||||+|+|+||||+||+|||+||||+|+.+..|.|+.+++|.|++..|+.||+|||+|||+|||++++||.++
T Consensus 2 ~~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R 81 (84)
T 1hcq_A 2 KETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDR 81 (84)
T ss_dssp CCCCBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCC-------
T ss_pred CCCCcCcEECCCCCCeeeCccchHHhhhhhhhccccccccccccCccCCcCCcCcccChhhhhHHHhHcCCCHHHhcccC
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999999999876
No 9
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=100.00 E-value=2.2e-40 Score=234.54 Aligned_cols=87 Identities=55% Similarity=1.071 Sum_probs=81.0
Q ss_pred CCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeeeeccc
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSL 118 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~~ 118 (335)
+..+|.||||+|+|+||||+||+|||+||||+|+.+..|.|..+++|.|++..|+.||+|||+|||+|||++++||.++.
T Consensus 3 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 82 (98)
T 1lo1_A 3 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRV 82 (98)
T ss_dssp CCCEETTTTEECSEESSSSEECHHHHHHHHHHHHTTCCCCCSSCSCCCCCHHHHHHCHHHHHHHHHHHTCCGGGSCSSCC
T ss_pred CCCCCcEeCCCCcCeeeCccchhhhhhhheeeecccCccccCccccccccccccccccchhHHHHhHcCCCHHHeecccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccCCCC
Q psy2636 119 KGRRGRL 125 (335)
Q Consensus 119 ~~~~~~~ 125 (335)
.+.+.+.
T Consensus 83 ~~~r~k~ 89 (98)
T 1lo1_A 83 RGGRQKY 89 (98)
T ss_dssp TTCCCCC
T ss_pred cCccccc
Confidence 6665544
No 10
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=100.00 E-value=4.9e-40 Score=227.60 Aligned_cols=81 Identities=54% Similarity=1.071 Sum_probs=73.7
Q ss_pred CCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeeeecccc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLK 119 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~~~ 119 (335)
..+|.||||+|+|+||||+||+|||+||||+|+.+..|.|..+++|.|++..|+.||+|||+|||+|||++++||.++.+
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 83 (86)
T 1dsz_A 4 YKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK 83 (86)
T ss_dssp --CCTTTCSCCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHTTCCGGGSCCC---
T ss_pred CCCCcEECCCccceeeCchhHHHHHHHHHHHhhcccceeeccCCccccCccccccchhhhHHHHHHhCCCHHHhhhcccc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred c
Q psy2636 120 G 120 (335)
Q Consensus 120 ~ 120 (335)
.
T Consensus 84 ~ 84 (86)
T 1dsz_A 84 K 84 (86)
T ss_dssp -
T ss_pred c
Confidence 3
No 11
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=100.00 E-value=9.6e-40 Score=231.72 Aligned_cols=82 Identities=55% Similarity=1.212 Sum_probs=72.1
Q ss_pred CCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeeeecccc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLK 119 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~~~ 119 (335)
..+|.||||+|+|+||||++|+|||+||||+|+.+..|.|+.+++|.|++..|+.||+|||+|||+|||++++||.++..
T Consensus 3 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 82 (99)
T 1ynw_B 3 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 82 (99)
T ss_dssp --CBTTTBSCCCBCCTTSCBCSHHHHHHHHHHHTTCCCCCSSSSCCCCCSTTSSSCHHHHHHHHHHTTCCSTTCC-----
T ss_pred CCCCceeCCCCcceeeCccchHHHHHHHHhhhccccccccCCCCcccccccCCccCccccHHHHhHcCCCHHHhhhcccc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred cc
Q psy2636 120 GR 121 (335)
Q Consensus 120 ~~ 121 (335)
.+
T Consensus 83 ~~ 84 (99)
T 1ynw_B 83 GK 84 (99)
T ss_dssp --
T ss_pred cc
Confidence 43
No 12
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=100.00 E-value=2.6e-39 Score=227.53 Aligned_cols=82 Identities=50% Similarity=1.074 Sum_probs=74.5
Q ss_pred CCCcccccCCCCCccccCCccccccccceecccccCCee-ecCCCCCCcccccccccccchhhHHHHhcCceeeeeeecc
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKY-VCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS 117 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y-~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~ 117 (335)
+..+|.||||+|+|+||||+||+|||+||||+|+.+..| .|..+++|.|++..|+.||+|||+|||+|||++++||.++
T Consensus 6 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R 85 (94)
T 1a6y_A 6 MVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGR 85 (94)
T ss_dssp --CBCTTTSSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCCSSTTCCCCCTTTTTSCHHHHHHHHTTTTCCSTTCCCCC
T ss_pred CCCcCcEeCCCCcceEeCccchhhhhhehheeeecccceEEccCCCCCccCccccccccchhHHHhhHccCCHHHhccCc
Confidence 346799999999999999999999999999999999999 5999999999999999999999999999999999999876
Q ss_pred ccc
Q psy2636 118 LKG 120 (335)
Q Consensus 118 ~~~ 120 (335)
...
T Consensus 86 ~~~ 88 (94)
T 1a6y_A 86 IPK 88 (94)
T ss_dssp ---
T ss_pred CcC
Confidence 543
No 13
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=100.00 E-value=3.3e-39 Score=234.04 Aligned_cols=84 Identities=55% Similarity=1.167 Sum_probs=77.8
Q ss_pred CCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeeeeccc
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSL 118 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~~ 118 (335)
+..+|.||||+|+|+||||+||+|||+||||+|..+..|.|..+++|.|++..|+.||+|||+|||+|||++++||.++.
T Consensus 8 ~~~~C~VCgd~a~G~HyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~R~~Cr~CR~~KCl~vGM~~~~vq~~R~ 87 (113)
T 2a66_A 8 LEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRM 87 (113)
T ss_dssp --CBCTTTCCBEEEEETTEEEEHHHHHHHHHHHHTTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCTTCC
T ss_pred CCCCCcEeCCCCcceeeCcccHHHHHHHHhhhhhccccccccccccCCcCCCccccccchhHHHHhHhCCCHHHhccccc
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cccC
Q psy2636 119 KGRR 122 (335)
Q Consensus 119 ~~~~ 122 (335)
.+.+
T Consensus 88 ~~~r 91 (113)
T 2a66_A 88 RGGR 91 (113)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 5444
No 14
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=100.00 E-value=5.8e-39 Score=235.99 Aligned_cols=83 Identities=48% Similarity=0.962 Sum_probs=77.8
Q ss_pred CCCCCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeeee
Q psy2636 36 PPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRT 115 (335)
Q Consensus 36 ~~~~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~ 115 (335)
+.....+|.||||+|+|+||||++|+|||+||||+|..+..|.|+.+++|.|++..|+.||+|||+|||+|||++++||.
T Consensus 4 p~~~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~ 83 (119)
T 2han_B 4 PRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVP 83 (119)
T ss_dssp -CCCSCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTGGGTCHHHHHHHHHHTTCCGGGSSC
T ss_pred CCCCCCcCeEeCCcCCcceECchhHHhhHHhhhhheEeccccccccccccccCccccccchhhHHHHHHHhCCCHHHccc
Confidence 33556789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q psy2636 116 DSL 118 (335)
Q Consensus 116 ~~~ 118 (335)
++.
T Consensus 84 ~r~ 86 (119)
T 2han_B 84 ENQ 86 (119)
T ss_dssp SSH
T ss_pred hhh
Confidence 764
No 15
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=100.00 E-value=3.2e-39 Score=233.65 Aligned_cols=79 Identities=41% Similarity=0.981 Sum_probs=75.1
Q ss_pred CCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeeeeccc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSL 118 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~~ 118 (335)
..+|.||||+|+|+||||+||+|||+||||+|..+..|.|..+++|.|++..|+.||+|||+|||+|||++++|+.++.
T Consensus 6 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~v~~~r~ 84 (110)
T 1kb2_A 6 PRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEE 84 (110)
T ss_dssp -CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCHHH
T ss_pred CCCCcEeCCCCCceEeCchhHhhhhhhheeeeecccceeeCCCCCccCCcccceecccccHhhhhhcCCcHHhcccHHH
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999998754
No 16
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=100.00 E-value=2.2e-38 Score=230.80 Aligned_cols=79 Identities=48% Similarity=0.965 Sum_probs=70.8
Q ss_pred CCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeeeecc
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS 117 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~ 117 (335)
+..+|.||||+|+|+||||.+|+|||+||||+|+.+..|.|+++++|.|++..|+.||+|||+|||+|||++++||.++
T Consensus 28 ~~~~C~VCgd~a~G~HyGv~sC~aCk~FFRRsv~~~~~y~C~~~~~C~i~~~~r~~Cr~CRl~KCl~vGM~~~avq~kR 106 (117)
T 4hn5_A 28 PPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKK 106 (117)
T ss_dssp --CBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCTTC-----
T ss_pred CCCcCCcCCCcCcccccCCcccchhhhhhhcceecCCceecCCCCccccCcccccCCcccchHHHhHcCCCHHHhcccc
Confidence 3467999999999999999999999999999999999999999999999999999999999999999999999999865
No 17
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=100.00 E-value=3.1e-38 Score=226.03 Aligned_cols=79 Identities=53% Similarity=1.045 Sum_probs=74.7
Q ss_pred CCcccccCCCCCccccCCccccccccceecccccCC--eeecCCCCCCcccccccccccchhhHHHHhcCceeeeeeecc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGS--KYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS 117 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~--~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~ 117 (335)
+++|.||||+|+|+||||+||+|||+||||+|..+. .|.|..+++|.|++..|+.||+|||+|||+|||++++||.++
T Consensus 1 ~~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~~ 80 (103)
T 2nll_B 1 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDS 80 (103)
T ss_dssp CCBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCGGGCCCSSCTTCCCSTTTTTSCHHHHHHHHHHTTCCGGGSCCHH
T ss_pred CCCCeEeCCcCcCeecCcccHHHhhhhheecccccccchhhhhccCCcCcCccCccccchhhhHhhhHhCCCHHHhhhhh
Confidence 357999999999999999999999999999999876 899999999999999999999999999999999999999875
Q ss_pred c
Q psy2636 118 L 118 (335)
Q Consensus 118 ~ 118 (335)
.
T Consensus 81 ~ 81 (103)
T 2nll_B 81 K 81 (103)
T ss_dssp H
T ss_pred h
Confidence 4
No 18
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=100.00 E-value=5e-38 Score=225.08 Aligned_cols=80 Identities=40% Similarity=0.899 Sum_probs=71.8
Q ss_pred CCCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeeeecc
Q psy2636 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS 117 (335)
Q Consensus 38 ~~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~ 117 (335)
.+..+|.||||+|+|+||||++|+|||+||||+|..+..|.|+.+++|.|++..|+.||+|||+|||+|||++++++..+
T Consensus 5 ~~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~~k~~k 84 (105)
T 1r4i_A 5 PPQKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKK 84 (105)
T ss_dssp -CCCBCSSSCSBEEEEETTEEEEHHHHHHHHHHHTSCCCCCCSSSSCCCCCTTTTTTCHHHHHHHHHHHTCCSCC-----
T ss_pred CCCCCCcEeCCCCCceEeCCcchhhhhhhhceeEEecCceeeccCCccccCccccccchhchHHHHHhhhcccchhhhcc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999987654
No 19
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=100.00 E-value=3.5e-38 Score=221.15 Aligned_cols=78 Identities=47% Similarity=0.946 Sum_probs=75.1
Q ss_pred CCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeeeecc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDS 117 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq~~~ 117 (335)
..+|.||||+|+|+||||.+|+|||+||||+|+.+..|.|..+++|.|++..|+.||+|||+|||+|||++++||.++
T Consensus 2 ~~~C~VCg~~a~g~hyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~avq~~r 79 (90)
T 3g9m_A 2 SHMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKK 79 (90)
T ss_dssp CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHSCCCCCCSSSSCCCCCTTGGGTCHHHHHHHHHHHTCCTTHHHHHC
T ss_pred CCcCccCCCcCcccccCCccchhHhHHhhhhhhcCCceeCCCCCccccCcccccCCcchhhHHHHHcCCCHHHhcccc
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999999875
No 20
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=99.94 E-value=5.9e-27 Score=203.47 Aligned_cols=111 Identities=20% Similarity=0.413 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhhh-hhc
Q psy2636 224 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR-SFG 302 (335)
Q Consensus 224 ~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~-~~~ 302 (335)
.+..+.++....+..+|+|||+||+|.+|+.+||++|||++|+++++|+.||++....+.+++++|..+..+.... +.+
T Consensus 84 ~~~~~~~~a~~~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~il~~a~rs~~~~~~~~~~~g~~~~~~~~~~~~~~ 163 (282)
T 1lbd_A 84 PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVG 163 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHGGGGSSSEEECTTSCEEEHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCceEecCCcccccchhhhcccH
Confidence 4566777788889999999999999999999999999999999999999999998877888999999998876543 444
Q ss_pred HHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 303 DDWLN-AILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 303 ~~~~~-~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.+.+ .+.+++.+|++|+||.+||+|||||+||
T Consensus 164 -~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~ 196 (282)
T 1lbd_A 164 -AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF 196 (282)
T ss_dssp -HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHc
Confidence 4444 4568999999999999999999999997
No 21
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=99.94 E-value=1.4e-26 Score=199.93 Aligned_cols=115 Identities=59% Similarity=1.065 Sum_probs=106.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhhh
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR 299 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 299 (335)
.+.+.+..++++.+..+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++....+.+++++|..++.+....
T Consensus 71 ~~~~~~~~~~~~~~~~l~~~v~waK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~l~~~~g~~~~~~~~~~ 150 (271)
T 1ovl_A 71 DDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQCVR 150 (271)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBTTTTEEECTTSBEEEHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEeeCCeeecHHHHHh
Confidence 34567888999999999999999999999999999999999999999999999999999888899999999998877666
Q ss_pred hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+++ ++++.+++++.+|++|++|.+||+|||||+||
T Consensus 151 ~~~-~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~ 185 (271)
T 1ovl_A 151 GFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 185 (271)
T ss_dssp TTT-THHHHHHHHHHHHHTTCCCHHHHHHHHHHHHS
T ss_pred hHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 666 78889999999999999999999999999987
No 22
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=99.92 E-value=7.9e-25 Score=186.60 Aligned_cols=116 Identities=55% Similarity=1.034 Sum_probs=109.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhh
Q psy2636 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQ 298 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~ 298 (335)
..+.+.++.|+++++..|+.+|+|||++|||.+|+.+||++|||++|+|+++|+.|+++....+.+++.+|..+.+....
T Consensus 48 ~~~~~~~~~~~~l~~~~i~~iV~wAK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~~~~l~~~~~~~~~~~~~~ 127 (257)
T 3v3e_B 48 KEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCA 127 (257)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBGGGTEEECTTSBEEEHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeEeCCCccccHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999988889999999999988877
Q ss_pred hhhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 299 RSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.+++ ++++.+++|+.+|++|++|++||+|||||+||
T Consensus 128 ~~~~-~~~~~l~~~~~~l~~L~ld~~E~a~LkAivLf 163 (257)
T 3v3e_B 128 RGFG-DWIDSILAFSRSLHSLLVDVPAFACLSALVLI 163 (257)
T ss_dssp HHHT-THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHS
T ss_pred hhhH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 7888 88999999999999999999999999999997
No 23
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=99.91 E-value=4.2e-24 Score=186.89 Aligned_cols=114 Identities=29% Similarity=0.517 Sum_probs=104.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhhh-
Q psy2636 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR- 299 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~- 299 (335)
+.+.|..++++....+..+|+|||+||+|.+|+.+||++|||++|+++++|+.|+++....+.+++++|..+.++.+..
T Consensus 69 ~~~~~~~~~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~~~~l~~~~g~~~~~~~~~~~ 148 (303)
T 1xdk_B 69 DLGLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNA 148 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTCBEEEHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCHHHHHHHHHhhHHHHHHHHHHHHhcccCCeEEecCCceecHHHHhhc
Confidence 4567888999999999999999999999999999999999999999999999999999888899999999998876643
Q ss_pred hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+++ ++++.+++|+.+|++|+||.+||+|||||+||
T Consensus 149 g~~-~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~ 183 (303)
T 1xdk_B 149 GFG-PLTDLVFTFANQLLPLEMDDTETGLLSAICLI 183 (303)
T ss_dssp TTG-GGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHS
T ss_pred CcH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 455 67888999999999999999999999999987
No 24
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=99.90 E-value=4.3e-25 Score=151.52 Aligned_cols=64 Identities=22% Similarity=0.301 Sum_probs=55.8
Q ss_pred CCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHHhcCceeeeee
Q psy2636 49 IAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVR 114 (335)
Q Consensus 49 ~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~Vq 114 (335)
++.|.||+++ |.+|++||||++ ++..|+|+.+++|.|++..|++||+|||||||+|||+...+.
T Consensus 13 p~~g~h~c~v-Cgd~asfFRRt~-~~~~y~C~~~~~C~i~~~~R~~C~~CR~qKCl~VgM~~~~~~ 76 (87)
T 2lze_A 13 PRGGKHICAI-CGNNAEDYKHTD-MDLTYTDRDYKNCESYHKCSDLCQYCRYQKDLAIHHQHHHGG 76 (87)
T ss_dssp CSCCSSSCSS-SSSSSSSCTTTT-TSCTTTSCCCCCCCCSSCCSSSCSGGGTSCCHHHHCSSCCCC
T ss_pred CCCCCEEccC-CCCccceECccc-CCCeeEcCCCCccccCCCccCcCCcccChhhccCcCEeccCc
Confidence 4557777776 777999999995 678899999999999999999999999999999999877553
No 25
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.90 E-value=4.3e-23 Score=174.75 Aligned_cols=116 Identities=75% Similarity=1.232 Sum_probs=107.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhh
Q psy2636 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQ 298 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~ 298 (335)
..+.+.|..++++.+..++.+|+|||++|+|.+|+.+||++|||++|+++++|+.||++....+.+++++|..+.++...
T Consensus 43 ~~~~~~~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~ 122 (244)
T 1pdu_A 43 MSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARIDDTKLIFCNGTVLHRTQCL 122 (244)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHCCSSCSEEECTTSBEEEHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEeeCCeeecHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999887788999999999987765
Q ss_pred hhhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 299 RSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.+++ ++++.+++++.+|++|++|++||+|||||+||
T Consensus 123 ~~~~-~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLf 158 (244)
T 1pdu_A 123 RSFG-EWLNDIMEFSRSLHNLEIDISAFACLCALTLI 158 (244)
T ss_dssp HHHT-THHHHHHHHHHHHHHHCCCHHHHHHHHHHHHS
T ss_pred hHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5666 78888999999999999999999999999987
No 26
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=99.89 E-value=1.1e-22 Score=167.47 Aligned_cols=116 Identities=26% Similarity=0.464 Sum_probs=105.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhh
Q psy2636 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQ 298 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~ 298 (335)
....+.|..+.+..+..+..+|+|||++|+|.+|+.+||++|||++|+++++++.|+++....+.+++++|..+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~ 95 (199)
T 3cqv_A 16 KSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLH 95 (199)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTSGGGGGSCHHHHHHHHHHHHHHHHHHHTGGGEETTTTEEECTTSCEEEHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHhCCCCCeEEecCCCeecHHHHH
Confidence 45677888899999999999999999999999999999999999999999999999988888889999999999887654
Q ss_pred h-hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 299 R-SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 299 ~-~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
. +++ ++++.+++++.+|++|++|.+||+|||||+||
T Consensus 96 ~~~~~-~~~~~i~~~~~~~~~L~ld~~E~~lLkaivL~ 132 (199)
T 3cqv_A 96 SMGAG-DLLNSMFEFSEKLNALQLSDEEMSLFTAVVLV 132 (199)
T ss_dssp HTTCC-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hcCcH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3 455 78889999999999999999999999999986
No 27
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=99.88 E-value=5e-22 Score=167.88 Aligned_cols=114 Identities=29% Similarity=0.509 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhhh-
Q psy2636 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR- 299 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~- 299 (335)
+.+.+..+.++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++....+.+++++|..+.++....
T Consensus 42 ~~~~~~~~~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~l~~~~g~~~~~~~~~~~ 121 (236)
T 1fcy_A 42 DLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNA 121 (236)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEECTTCBEEEHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhccCCCeEEeCCCceecHHHHHHc
Confidence 4677888999999999999999999999999999999999999999999999999999888899999999998876543
Q ss_pred hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+++ ++.+.+++++.+|++|++|++||+|||||+||
T Consensus 122 g~~-~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~ 156 (236)
T 1fcy_A 122 GFG-PLTDLVFAFAGQLLPLEMDDTETGLLSAICLI 156 (236)
T ss_dssp TTG-GGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHS
T ss_pred CcH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 455 67888999999999999999999999999986
No 28
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=99.88 E-value=6e-22 Score=168.43 Aligned_cols=114 Identities=26% Similarity=0.439 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhh-h
Q psy2636 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQ-R 299 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~-~ 299 (335)
....+..++++....+..+|+|||+||+|.+|+.+||++|||++|+++++|+.||++...++.+++++|..+.++... .
T Consensus 46 ~~~~~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~~s~~~~~~l~~~~g~~~~~~~~~~~ 125 (248)
T 3k6p_A 46 HLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAA 125 (248)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCEEEETTEEECHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEeCCCcccChhhhhhc
Confidence 445678889999999999999999999999999999999999999999999999999887788999999999886543 3
Q ss_pred hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+++ ++++.+.+++.+|++|++|.+||+|||||+||
T Consensus 126 ~~~-~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~ 160 (248)
T 3k6p_A 126 GLG-ELGAALLQLVRRLQALRLEREEYVLLKALALA 160 (248)
T ss_dssp TTT-THHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred cHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 455 77899999999999999999999999999986
No 29
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.88 E-value=8.7e-22 Score=167.49 Aligned_cols=113 Identities=25% Similarity=0.526 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhhh-h
Q psy2636 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR-S 300 (335)
Q Consensus 222 ~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~-~ 300 (335)
...+..+.++....++.+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++....+.+++++|..+.++.... +
T Consensus 51 ~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~ 130 (248)
T 2nxx_E 51 DVRFRHITEITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQTDSILFVNNQPYSRDSYNLAG 130 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEecCCceecHHHHHhcc
Confidence 455677888888999999999999999999999999999999999999999999998888899999999998776543 4
Q ss_pred hcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
++ ++++.+++++.+|++|++|.+||+|||||+||
T Consensus 131 ~~-~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~ 164 (248)
T 2nxx_E 131 MG-ETIEDLLHFCRTMYSMRVDNAEYALLTAIVIF 164 (248)
T ss_dssp CH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred hH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 55 78899999999999999999999999999987
No 30
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=169.88 Aligned_cols=115 Identities=23% Similarity=0.466 Sum_probs=104.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhh--
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC-- 297 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~-- 297 (335)
.....+..+.++....+..+|+|||+||+|.+|+.+||++|||++|+++++|+.||++....+.+++++|..+.++..
T Consensus 41 ~~~~~~~~l~e~a~~~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~ 120 (298)
T 2ocf_A 41 SEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKC 120 (298)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSTTEEEEETTEEEEHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHHHHHHhhHHHHHHHHHHHhcccCCceeecCCceechhhhhh
Confidence 455677888999999999999999999999999999999999999999999999999998888999999999988753
Q ss_pred hhhhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 298 QRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
..++. ++++.+++++.+|++|+||.+||+|||||+||
T Consensus 121 ~~g~~-~~~~~l~~~~~~l~~L~ld~~Ey~lLkAIvLf 157 (298)
T 2ocf_A 121 VEGMV-EIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 157 (298)
T ss_dssp STTHH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hhhHH-HHHHHHHHHHHhHhhhCcCHHHHHHHHHHHHc
Confidence 23555 77888899999999999999999999999986
No 31
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=99.88 E-value=9.7e-22 Score=167.37 Aligned_cols=114 Identities=24% Similarity=0.466 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhh--h
Q psy2636 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC--Q 298 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~--~ 298 (335)
....+..+.+...+.+..+|+|||++|+|.+|+.+||++|||++|+++++|+.||++....+.+++++|..++.+.. .
T Consensus 33 ~~~~~~~l~~~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~l~~~~g~~~~~~~~~~~ 112 (248)
T 1xpc_A 33 EASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCV 112 (248)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEETTEEEEHHHHTTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHhHHHHHHHHHHHhccccCceeecCCceeCccchhhh
Confidence 34567788888899999999999999999999999999999999999999999999998888999999999887653 2
Q ss_pred hhhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 299 RSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.+++ ++++.+++++.+|++|++|.+||+|||||+||
T Consensus 113 ~~~~-~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~ 148 (248)
T 1xpc_A 113 EGMV-EIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 148 (248)
T ss_dssp TTHH-HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 3454 77888999999999999999999999999986
No 32
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=99.87 E-value=1.2e-21 Score=171.17 Aligned_cols=115 Identities=26% Similarity=0.541 Sum_probs=104.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhhh
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR 299 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 299 (335)
.....+..+.++....+..+|+|||+||+|.+|+.+||++|||++|+++++|+.|+++....+.+++++|..+..+....
T Consensus 113 ~~~~~~~~l~el~~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~ 192 (310)
T 1z5x_E 113 VAEERFRHITEITILTVQLIVEFSKRLPGFDKLIREDQIALLKACSSEVMMFRMARRYDAETDSILFATNQPYTRESYTV 192 (310)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeCCCccccHHHHHh
Confidence 34566778888888999999999999999999999999999999999999999999998888899999999988776433
Q ss_pred -hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 300 -SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 300 -~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+++ ++++.+++|+.+|++|+||.+||+|||||+||
T Consensus 193 ~g~~-~~~~~i~~~~~~l~~L~ld~~E~alLkAIvLf 228 (310)
T 1z5x_E 193 AGMG-DTVEDLLRFCRHMCAMKVDNAEYALLTAIVIF 228 (310)
T ss_dssp TTTH-HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred cchh-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 555 78899999999999999999999999999987
No 33
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=99.87 E-value=1e-21 Score=166.52 Aligned_cols=115 Identities=23% Similarity=0.421 Sum_probs=104.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhh-
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQ- 298 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~- 298 (335)
.....+..++++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.||++....+.+++++|..+.++...
T Consensus 30 ~~~~~~~~~~~~a~~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~l~~~~g~~~~~~~~~~ 109 (240)
T 3oll_A 30 TEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKC 109 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEETBEEEEGGGGGG
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCeeEecCCcccchhhHHH
Confidence 4667788899999999999999999999999999999999999999999999999999988889999999999876543
Q ss_pred -hhhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 299 -RSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 299 -~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.+++ ++++.+++++.+|++|++|.+||+|||||+||
T Consensus 110 ~~~~~-~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~ 146 (240)
T 3oll_A 110 VEGIL-EIFDMLLATTSRFRELKLQHKEYLCVKAMILL 146 (240)
T ss_dssp STTHH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HhhHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 3455 77888999999999999999999999999985
No 34
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=99.87 E-value=1.5e-21 Score=165.65 Aligned_cols=115 Identities=28% Similarity=0.480 Sum_probs=103.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhh-
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQ- 298 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~- 298 (335)
.....+..+.++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.||++...++.+++++|..++.+...
T Consensus 45 ~~~~~~~~~~~~~~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~~~~~~~~~~ 124 (244)
T 2e2r_A 45 SDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKL 124 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCEEEETTEEECHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCeEEecCCEeecHHHhhh
Confidence 4556778889999999999999999999999999999999999999999999999999888888999999988876543
Q ss_pred hhhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 299 RSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.+++ ++++.+++++.+|++|++|.+||+|||||+||
T Consensus 125 ~~~~-~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~ 160 (244)
T 2e2r_A 125 AGLL-DLNNAILQLVKKYKSMKLEKEEFVTLKAIALA 160 (244)
T ss_dssp TTCH-HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444 77888999999999999999999999999986
No 35
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=99.87 E-value=8.5e-22 Score=169.14 Aligned_cols=112 Identities=25% Similarity=0.478 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhhh-hh
Q psy2636 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR-SF 301 (335)
Q Consensus 223 ~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~-~~ 301 (335)
..+..++++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++....+.+++++|..+.++.... ++
T Consensus 68 ~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQi~LLk~~~~el~~L~~a~~~~~~~~~l~~~~g~~~~~~~~~~~g~ 147 (266)
T 2r40_D 68 MPFRQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGM 147 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceecHHHHhhcCH
Confidence 35778889999999999999999999999999999999999999999999999998888899999999998876543 55
Q ss_pred cHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 302 GDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 302 ~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+ ++++.+++++.+|++|++|++||+|||||+||
T Consensus 148 ~-~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~ 180 (266)
T 2r40_D 148 A-YVIEDLLHFCRCMYSMMMDNVHYALLTAIVIF 180 (266)
T ss_dssp H-HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHHHhcccCCHHHHHHHhhheee
Confidence 5 78899999999999999999999999999987
No 36
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=99.87 E-value=9.8e-22 Score=168.55 Aligned_cols=115 Identities=28% Similarity=0.497 Sum_probs=105.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhhh
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR 299 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 299 (335)
.+.+.|..+++.....+..+|+|||+||+|.+|+.+||++|||++|+++++|+.|+++....+.+++++|..+.++....
T Consensus 65 ~~~~~~~~~~e~~~~~l~~~VewaK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~~~~l~~~~g~~~~~~~~~~ 144 (266)
T 3kmr_A 65 LDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN 144 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEECTTSBEEEHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEecCCcccchHHHhh
Confidence 35677889999999999999999999999999999999999999999999999999999888899999999998877653
Q ss_pred -hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 300 -SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 300 -~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+++ .+.+.+++|+.+|++|++|++||+|||||+||
T Consensus 145 ~g~~-~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvL~ 180 (266)
T 3kmr_A 145 AGFG-PLTDLVFAFANQLLPLEMDDAETGLLSAICLI 180 (266)
T ss_dssp HTTG-GGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHS
T ss_pred cchH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 455 67888899999999999999999999999986
No 37
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=99.87 E-value=1.3e-21 Score=168.15 Aligned_cols=115 Identities=23% Similarity=0.421 Sum_probs=103.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhh-
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQ- 298 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~- 298 (335)
.....+..+.++....+..+|+|||+||+|.+|+.+||++|||++|+++++|+.||++....+.+++++|..++.+...
T Consensus 28 ~~~~~~~~l~e~a~~~l~~~VewAK~lp~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~ 107 (268)
T 1yye_A 28 TEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKC 107 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEETTEEEEGGGGGG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEecCCcccChhhHhh
Confidence 3456678889999999999999999999999999999999999999999999999999988889999999998876532
Q ss_pred -hhhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 299 -RSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 299 -~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.+++ ++++.+++++.+|++|++|.+||+|||||+||
T Consensus 108 ~~~~~-~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLf 144 (268)
T 1yye_A 108 VEGIL-EIFDMLLATTSRFRELKLQHKEYLCVKAMILL 144 (268)
T ss_dssp STTHH-HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hccHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 3555 77888999999999999999999999999986
No 38
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=99.87 E-value=1.2e-21 Score=166.34 Aligned_cols=114 Identities=25% Similarity=0.417 Sum_probs=103.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhhh
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR 299 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 299 (335)
...+.|..+.+..+..+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++....+.+++ +|..+..+....
T Consensus 47 ~~~~~~~~~~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~~~~-~g~~~~~~~~~~ 125 (244)
T 1nq7_A 47 SREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLF-EGKYGGMQMFKA 125 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHTSCHHHHHHHHHHHHHHHHHHHHGGGEETTTTEEEE-TTEEEEGGGGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEeE-CCEEecHHHHhh
Confidence 4566788888899999999999999999999999999999999999999999999999888888999 999888776543
Q ss_pred -hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 300 -SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 300 -~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+++ ++++.+++++.+|++|++|++||+|||||+||
T Consensus 126 ~~~~-~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~ 161 (244)
T 1nq7_A 126 LGSD-DLVNEAFDFAKNLCSLQLTEEEIALFSSAVLI 161 (244)
T ss_dssp GSCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHS
T ss_pred cChH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 344 78899999999999999999999999999987
No 39
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=99.87 E-value=5.6e-22 Score=167.89 Aligned_cols=115 Identities=25% Similarity=0.461 Sum_probs=91.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhhh
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR 299 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 299 (335)
+..+.|..+...++..+..+|+|||+||+|.+|+.+||++|||++|+++++|+.|+++....+.+++++|..+..+....
T Consensus 62 s~~~~~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~l~~~~g~~~~~~~~~~ 141 (245)
T 3n00_A 62 TVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGA 141 (245)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCSCC--------------CCGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCCeecHHHHhh
Confidence 44578888999999999999999999999999999999999999999999999999877777889999999988766543
Q ss_pred -hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 300 -SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 300 -~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+++ ++.+.+++|+.+|++|++|.+||+|||||+||
T Consensus 142 ~~~~-~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvL~ 177 (245)
T 3n00_A 142 MGMG-DLLSAMFDFSEKLNSLALTEEELGLFTAVVLV 177 (245)
T ss_dssp GTTH-HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred ccHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444 88999999999999999999999999999986
No 40
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=99.87 E-value=2.1e-21 Score=166.05 Aligned_cols=116 Identities=16% Similarity=0.307 Sum_probs=103.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccC--CCeEEeeCCeEeeHHh
Q psy2636 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE--DTKLIFCNGVVLEKQQ 296 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~--~~~~~~~~g~~~~~~~ 296 (335)
......+..++++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.||++... .+.+++++|..+..+.
T Consensus 36 ~~~~~~~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~l~~~~g~~~~~~~ 115 (260)
T 3vhv_A 36 DTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEK 115 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhChHHhcCCHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCeEEecCCccccHHH
Confidence 35667788999999999999999999999999999999999999999999999999997653 3579999999998876
Q ss_pred hhh-hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 297 CQR-SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 297 ~~~-~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
... +++ ++++.+.+++.+|++|++|.+||+|||||+||
T Consensus 116 ~~~~~~~-~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLf 154 (260)
T 3vhv_A 116 MHQSAMY-ELCQGMHQISLQFVRLQLTFEEYTIMKVLLLL 154 (260)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred hhcccHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 543 444 78889999999999999999999999999987
No 41
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=99.87 E-value=2.4e-21 Score=164.28 Aligned_cols=115 Identities=18% Similarity=0.361 Sum_probs=103.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCC-CeEEeeCCeEeeHHhhh
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED-TKLIFCNGVVLEKQQCQ 298 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~-~~~~~~~g~~~~~~~~~ 298 (335)
.....+..++++....+..+|+|||+||+|.+|+.+||++|||++|+++++|+.||++...+ +.+++++|..+.++...
T Consensus 33 ~~~~~~~~~~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~l~~~~g~~~~~~~~~ 112 (243)
T 3ltx_A 33 TKVHLLNSLVKLAERELVHLINWAKNVPGYTDLSLSDQVHLIECCWMELLLLNCAFRSIEHGGKSLAFAPDLVLDRSSWS 112 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSEEEEETTEEEEHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEecCCcccchhhhc
Confidence 46677888999999999999999999999999999999999999999999999999987654 46999999999887654
Q ss_pred h-hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 299 R-SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 299 ~-~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
. +++ ++.+.+++++.+|++|++|.+||+|||||+||
T Consensus 113 ~~~~~-~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~ 149 (243)
T 3ltx_A 113 TVEMT-EIFEQVAAVSEQMMQNHLHKDELLLLQAMVLV 149 (243)
T ss_dssp HTTCH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccCHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3 444 78888999999999999999999999999986
No 42
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=99.86 E-value=2.6e-21 Score=164.38 Aligned_cols=115 Identities=23% Similarity=0.404 Sum_probs=101.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhhh
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR 299 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 299 (335)
...+.|..+++..+..+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++...++.+.+ +|.++..+....
T Consensus 53 ~~~~~~~~~~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~~~~~-~g~~~~~~~~~~ 131 (248)
T 3l0l_A 53 SMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNRTVFF-EGKYGGMELFRA 131 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGGEETTTTEEEE-TTEEECGGGGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEe-CCCcccHHHHhh
Confidence 4567788899999999999999999999999999999999999999999999999998888888888 777776554433
Q ss_pred hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
....++++.+++++.+|++|++|.+||+|||||+||
T Consensus 132 ~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivLf 167 (248)
T 3l0l_A 132 LGCSELISSIFDFSHSLSALHFSEDEIALYTALVLI 167 (248)
T ss_dssp GSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 223488999999999999999999999999999987
No 43
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=99.86 E-value=1.6e-21 Score=167.47 Aligned_cols=115 Identities=29% Similarity=0.464 Sum_probs=106.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhhh
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR 299 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 299 (335)
.+.+.|..+.+..+..+..+|+|||+||+|.+|+.+||++|||++|+++++|+.|+++....+.+++++|..+.++....
T Consensus 67 ~~~~~~~~~~~~~~~~l~~~VewaK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~l~~~~g~~~~~~~~~~ 146 (267)
T 3ilz_A 67 VDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKN 146 (267)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHTSHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCBTTTTBEEETTTEEECHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhCCHhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCCeeecHHHHhc
Confidence 45678899999999999999999999999999999999999999999999999999999888899999999998877643
Q ss_pred -hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 300 -SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 300 -~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+.+ .+.+.+++|+.+|++|++|.+||+|||||+||
T Consensus 147 ~~~~-~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~ 182 (267)
T 3ilz_A 147 GGLG-VVSDAIFELGKSLSAFNLDDTEVALLQAVLLM 182 (267)
T ss_dssp TTTT-HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHS
T ss_pred cCHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 445 78889999999999999999999999999987
No 44
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=99.86 E-value=8.5e-22 Score=169.51 Aligned_cols=115 Identities=23% Similarity=0.421 Sum_probs=103.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhh-
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQ- 298 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~- 298 (335)
.+...+..+.++....+..+|+|||+||+|.+|+.+||++|||++|+++++|+.||++....+.+++++|..+..+...
T Consensus 56 ~~~~~~~~l~~~a~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~iL~~a~rs~~~~~~l~~~~g~~~~~~~~~~ 135 (271)
T 1l2j_A 56 TEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDLVLDRDEGKC 135 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHTTHHHHHHHHHHHHTSSSTTEECSSSSCCEETGGGGG
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCeeeecCCccccchhhhh
Confidence 3455678889999999999999999999999999999999999999999999999999988889999999988876432
Q ss_pred -hhhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 299 -RSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 299 -~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.+++ ++++.+++++.+|++|++|.+||+|||||+||
T Consensus 136 ~~g~~-~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLf 172 (271)
T 1l2j_A 136 VEGIL-EIFDMLLATTSRFRELKLQHKEYLCVKAMILL 172 (271)
T ss_dssp STTHH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hccHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 3555 77888999999999999999999999999986
No 45
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=99.86 E-value=1.7e-21 Score=168.72 Aligned_cols=116 Identities=24% Similarity=0.497 Sum_probs=106.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhh-
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQ- 298 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~- 298 (335)
.....+..+.++....+..+|+|||+||+|.+|+.+||++|||++|+++++|+.|+++....+.+.+++|..+.++...
T Consensus 85 ~~~~~~~~l~e~~~~~l~~~VewaK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 164 (283)
T 3ipq_A 85 ARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAK 164 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEEETTTEEECHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCceecHHHHHH
Confidence 3466788899999999999999999999999999999999999999999999999999888889999999999887653
Q ss_pred hhhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 299 RSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.+++.++++.+++++.+|++|+||.+||+|||||+||
T Consensus 165 ~g~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~ 201 (283)
T 3ipq_A 165 AGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIF 201 (283)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4666688999999999999999999999999999987
No 46
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=99.86 E-value=4.7e-21 Score=164.65 Aligned_cols=114 Identities=24% Similarity=0.429 Sum_probs=100.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhhh
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR 299 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 299 (335)
...+.|..+++..+..+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++....+.+.+ +|.++..+....
T Consensus 62 ~~~~~~~~~~~~~~~~l~~~VewaK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~~~l~-~g~~~~~~~~~~ 140 (270)
T 1n83_A 62 QREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYF-DGKYASPDVFKS 140 (270)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGGEETTTTEEEE-TTEEECGGGGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEe-CCccccHHHHHh
Confidence 3456788888999999999999999999999999999999999999999999999998887777877 677776554433
Q ss_pred -hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 300 -SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 300 -~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+.+ ++++.+++++.+|++|++|++||+|||||+||
T Consensus 141 ~~~~-~~~~~i~~~~~~l~~L~ld~~E~~lLkAivLf 176 (270)
T 1n83_A 141 LGCE-DFISFVFEFGKSLCSMHLTEDEIALFSAFVLM 176 (270)
T ss_dssp GSCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHS
T ss_pred cCHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344 78999999999999999999999999999987
No 47
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=99.86 E-value=1.7e-21 Score=166.52 Aligned_cols=113 Identities=21% Similarity=0.371 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeC-CeEeeHHhhhh-h
Q psy2636 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCN-GVVLEKQQCQR-S 300 (335)
Q Consensus 223 ~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~-g~~~~~~~~~~-~ 300 (335)
+.+..++++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++....+.+++++ |..+..++... +
T Consensus 56 ~~~~~~~~~~~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (254)
T 3b0t_A 56 SMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAG 135 (254)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEETTTTEEECSSGGGEECHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHhccCCCeEEecCCCeeeeHHHHHHcC
Confidence 347788899999999999999999999999999999999999999999999999888888899986 66677665433 6
Q ss_pred hcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 301 FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
++.++++.+++++.+|++|++|++||+|||||+||
T Consensus 136 ~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~ 170 (254)
T 3b0t_A 136 HSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIV 170 (254)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 66688999999999999999999999999999987
No 48
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=99.86 E-value=4.6e-21 Score=166.18 Aligned_cols=116 Identities=16% Similarity=0.307 Sum_probs=103.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccC--CCeEEeeCCeEeeHHh
Q psy2636 219 IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE--DTKLIFCNGVVLEKQQ 296 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~--~~~~~~~~g~~~~~~~ 296 (335)
......+..++++....+..+|+|||+||+|.+|+.+||++|||++|+++++|+.||++... .+.+++++|..+..+.
T Consensus 70 ~~~~~~~~~l~e~a~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rS~~~~~~~~l~~~~g~~~~~~~ 149 (294)
T 3vhu_A 70 DTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEK 149 (294)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHhHHHHHHHHHHHHhhhcCCCCeEEeCCCccccHHH
Confidence 35667788999999999999999999999999999999999999999999999999997653 3579999999998776
Q ss_pred hhh-hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 297 CQR-SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 297 ~~~-~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
... +++ ++++.+.+++.+|++|++|.+||+|||||+||
T Consensus 150 ~~~~~~~-~~~~~l~~~~~~l~~L~ld~~EyalLkAIvLf 188 (294)
T 3vhu_A 150 MHQSAMY-ELCQGMHQISLQFVRLQLTFEEYTIMKVLLLL 188 (294)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred hhcccHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 543 444 78889999999999999999999999999997
No 49
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=99.86 E-value=6.7e-21 Score=163.84 Aligned_cols=116 Identities=20% Similarity=0.316 Sum_probs=101.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccC--CCeEEeeCCeEeeHHhh
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE--DTKLIFCNGVVLEKQQC 297 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~--~~~~~~~~g~~~~~~~~ 297 (335)
.....+..+.+.....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.||++... +..+++++|.+++.+..
T Consensus 46 ~~~~~~~~l~e~a~~~l~~~VewAK~ip~F~~L~~~DQv~LLk~~w~el~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~ 125 (269)
T 1t7r_A 46 SFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRM 125 (269)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCCCeEEeCCCceecHHhh
Confidence 4556678888899999999999999999999999999999999999999999999997653 33688999999988765
Q ss_pred hhhhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 298 QRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
......++++.+++++.+|++|++|.+||+|||||+||
T Consensus 126 ~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvLf 163 (269)
T 1t7r_A 126 HKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLF 163 (269)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 44333367788899999999999999999999999997
No 50
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=99.86 E-value=2.3e-21 Score=166.47 Aligned_cols=115 Identities=21% Similarity=0.317 Sum_probs=95.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHh-h-
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQ-C- 297 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~-~- 297 (335)
.+...|..+....+..|+.+|+|||++|+|.+|+.+||++|||++|+++++++.|++++.++..+.+.++....... .
T Consensus 73 ~~~~~~~~~~~~~~~~v~~iVewAK~iPgF~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (273)
T 3vi8_A 73 AEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSL 152 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGEETTEEEETTTTEEEEHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCCccchHHHHHh
Confidence 34456788888899999999999999999999999999999999999999999999988766555555444333221 1
Q ss_pred hhhhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 298 QRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
..+++ ++++.+++|+.+|++|++|.+||+|||||+||
T Consensus 153 ~~~~~-~~~~~l~~~~~~~~~L~ld~~E~alLkAivLf 189 (273)
T 3vi8_A 153 RKPFC-DIMEPKFDFAMKFNALELDDSDISLFVAAIIC 189 (273)
T ss_dssp CTTTH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHS
T ss_pred hhhHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 12344 88899999999999999999999999999987
No 51
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=99.86 E-value=1.1e-20 Score=162.27 Aligned_cols=112 Identities=21% Similarity=0.387 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccC----CCe--------------E
Q psy2636 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE----DTK--------------L 284 (335)
Q Consensus 223 ~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~----~~~--------------~ 284 (335)
..+..++++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.||++... .+. +
T Consensus 42 ~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~w~el~lL~~a~~s~~~~~~~~~~~~~~~~~~~~~~~~l 121 (264)
T 1g2n_A 42 APVSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLM 121 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHGGGSCCC----------CCCCCCEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCChhcCCHHHHHHHHHHhhHHHHHHHHHHHccccccccccccccccccccccccce
Confidence 5678888999999999999999999999999999999999999999999999998866 555 9
Q ss_pred EeeCCeEeeHHhhhh-hhcHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 285 IFCNGVVLEKQQCQR-SFGDDWL-NAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 285 ~~~~g~~~~~~~~~~-~~~~~~~-~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
++++|..++++.... +++ ++. +.+.+++.+|++|++|.+||+|||||+||
T Consensus 122 ~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~ 173 (264)
T 1g2n_A 122 CLMPGMTLHRNSALQAGVG-QIFDRVLSELSLKMRTLRVDQAEYVALKAIILL 173 (264)
T ss_dssp EEETTEEEEHHHHHHHTCH-HHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHS
T ss_pred eecCCcccCchhhhhccHH-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 999999999876543 455 455 67789999999999999999999999997
No 52
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=99.86 E-value=5.4e-21 Score=163.48 Aligned_cols=115 Identities=22% Similarity=0.343 Sum_probs=102.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccC--CCeEEeeCCeEeeHHhh
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE--DTKLIFCNGVVLEKQQC 297 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~--~~~~~~~~g~~~~~~~~ 297 (335)
.....+..+.++..+.+..+|+|||++|+|.+|+.+||++|||++|+++++|+.||++... ++.+++++|..+..+..
T Consensus 39 ~~~~~~~~l~~~a~~~l~~~VewaK~iP~F~~L~~~DQ~~LLk~~~~el~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~ 118 (261)
T 3mnp_A 39 SAWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLIINEQRM 118 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCEEEecCCcccchhhh
Confidence 4566778889999999999999999999999999999999999999999999999998753 33589999999988765
Q ss_pred hh-hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 298 QR-SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 298 ~~-~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.. +++ ++++.+++++.+|++|++|.+||+|||||+||
T Consensus 119 ~~~~~~-~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~ 156 (261)
T 3mnp_A 119 TLPCMY-DQCKHMLFISTELQRLQVSYEEYLCMKTLLLL 156 (261)
T ss_dssp TSTTTH-HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred hhhhHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 43 444 77888999999999999999999999999987
No 53
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=99.85 E-value=2.6e-21 Score=168.17 Aligned_cols=115 Identities=19% Similarity=0.342 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeC-CeEeeHHhhhh
Q psy2636 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCN-GVVLEKQQCQR 299 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~-g~~~~~~~~~~ 299 (335)
+.+.|..+.+.....+..+|+|||+||+|.+|+.+||++|||++|+++++|+.|+++...++.+++++ |..+.+++...
T Consensus 57 ~~~~~~~l~~~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~ 136 (292)
T 2o4j_A 57 PLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSK 136 (292)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEETTTTEEECSSGGGEECHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcchhhccHHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEecCCCeEEcHHHHHh
Confidence 34567888889999999999999999999999999999999999999999999999888888899984 87787766543
Q ss_pred -hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 300 -SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 300 -~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+++.++++.+++|+.+|++|+||++||+|||||+||
T Consensus 137 ~g~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLf 173 (292)
T 2o4j_A 137 AGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIV 173 (292)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHS
T ss_pred cCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666688999999999999999999999999999997
No 54
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=99.85 E-value=4e-21 Score=163.37 Aligned_cols=111 Identities=23% Similarity=0.292 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccC--CCeEEeeCCeEeeHHhhhh--h
Q psy2636 225 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE--DTKLIFCNGVVLEKQQCQR--S 300 (335)
Q Consensus 225 ~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~--~~~~~~~~g~~~~~~~~~~--~ 300 (335)
+..+.++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.||++... .+.+++++|..+..+.... +
T Consensus 47 ~~~l~~~a~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~~~ 126 (246)
T 1ymt_A 47 FSLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAG 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTEEECTTSCEEEHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEecCCCccchhhhhhhcc
Confidence 56678888889999999999999999999999999999999999999999998764 6789999999998765432 2
Q ss_pred hc-HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 301 FG-DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 301 ~~-~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.+ .++++.+.+++.+|++|++|.+||+|||||+||
T Consensus 127 ~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~ 162 (246)
T 1ymt_A 127 SLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILF 162 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 22 367888999999999999999999999999987
No 55
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=99.85 E-value=5.5e-21 Score=163.64 Aligned_cols=115 Identities=21% Similarity=0.370 Sum_probs=100.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCC--CeEEeeCCeEeeHHhh
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED--TKLIFCNGVVLEKQQC 297 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~--~~~~~~~g~~~~~~~~ 297 (335)
.....+..++++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.||++.... +.+++++|..++.+..
T Consensus 38 ~~~~~~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~ 117 (261)
T 1sqn_A 38 TSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRM 117 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECGGGC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCeEEeCCCcccchHhh
Confidence 45566788899999999999999999999999999999999999999999999999987543 3588999998887654
Q ss_pred hh-hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 298 QR-SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 298 ~~-~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.. +++ ++++.+++++.+|++|++|.+||+|||||+||
T Consensus 118 ~~~~~~-~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvLf 155 (261)
T 1sqn_A 118 KESSFY-SLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLL 155 (261)
T ss_dssp CSHHHH-HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred hhhhHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 32 444 67788999999999999999999999999997
No 56
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=99.84 E-value=2.4e-21 Score=164.21 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccC--CCeEEeeCCeEeeHHhhh
Q psy2636 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE--DTKLIFCNGVVLEKQQCQ 298 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~--~~~~~~~~g~~~~~~~~~ 298 (335)
..+.+..++++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.||++... .+.+++++|..+..+...
T Consensus 44 ~~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~ 123 (243)
T 2iz2_A 44 EVDLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLG 123 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCCBCSSSCBCCCCTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhChhHhhCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeecCCcccChhhHh
Confidence 345678888999999999999999999999999999999999999999999999998753 456889999988766543
Q ss_pred h-hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 299 R-SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 299 ~-~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
. +.. ++.+.+.+++.+|++|++|.+||+|||||+||
T Consensus 124 ~~~~~-~~~~~~~~~~~~l~~L~ld~~E~~lLkAivL~ 160 (243)
T 2iz2_A 124 LLGVP-QLGDYFNELQNKLQDLKFDMGDYVCMKFLILL 160 (243)
T ss_dssp TSSTT-SSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHC
T ss_pred hcchH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 2 333 56788899999999999999999999999987
No 57
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=99.84 E-value=6.6e-21 Score=162.67 Aligned_cols=114 Identities=19% Similarity=0.278 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccC--CCeEEeeCCeEeeHHhhhh
Q psy2636 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE--DTKLIFCNGVVLEKQQCQR 299 (335)
Q Consensus 222 ~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~--~~~~~~~~g~~~~~~~~~~ 299 (335)
...+..++++....+..+|+|||+||+|.+|+.+||++|||++|+++++|+.||++... .+.+++++|..+..+.+..
T Consensus 55 ~~~~~~l~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~ 134 (257)
T 3plz_A 55 LSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIAS 134 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCBTTEEECTTSCEEEHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcCcChhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCccChHHHhh
Confidence 44577788888899999999999999999999999999999999999999999998753 4789999999998876542
Q ss_pred --hhc-HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 300 --SFG-DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 300 --~~~-~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+.. .++++.+.+++.+|++|++|.+||+|||||+||
T Consensus 135 ~~g~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~ 173 (257)
T 3plz_A 135 QAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLF 173 (257)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHS
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 221 477888999999999999999999999999987
No 58
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=99.84 E-value=1.3e-20 Score=160.27 Aligned_cols=115 Identities=19% Similarity=0.318 Sum_probs=100.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhh-h
Q psy2636 220 AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQC-Q 298 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~-~ 298 (335)
.....+..++++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++....+.+ +.++..+..+.. .
T Consensus 51 ~~~~~~~~~~e~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 129 (246)
T 1xvp_B 51 PVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNF-LCGPLRYTIEDGAR 129 (246)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHSCHHHHHHHHHHHHHHHHHHHHGGGEETTTTEE-ECSSCEECHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHcCcchhhCCHHHHHHHHHhhHHHHHHHHHHHHhccccCeE-eeCCeeecHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999988776665 556666666543 3
Q ss_pred hhhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 299 RSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.+++.++.+.+++|+.+|++|++|++||+|||||+||
T Consensus 130 ~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~ 166 (246)
T 1xvp_B 130 VGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALF 166 (246)
T ss_dssp HTCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 4666688899999999999999999999999999987
No 59
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.84 E-value=5.5e-21 Score=161.44 Aligned_cols=113 Identities=18% Similarity=0.349 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhh-hhh
Q psy2636 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQ-RSF 301 (335)
Q Consensus 223 ~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~-~~~ 301 (335)
..+..+.++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.||++....+.+++++|..+.++... .+.
T Consensus 37 ~~~~~~~~~~~~~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~g~~~~~~~~~~~~~ 116 (235)
T 2nxx_A 37 TTVNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGV 116 (235)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSSSEECSSSCEECSSSCSSSSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHhcccCCCceEecCCcccccchhhhhch
Confidence 3567778888899999999999999999999999999999999999999999999887778999999999876543 244
Q ss_pred cHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 302 GDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 302 ~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+..+.+.+.+++.+|++|++|.+||+|||||+||
T Consensus 117 ~~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~ 150 (235)
T 2nxx_A 117 GNIYDRVLSELVNKMKEMKMDKTELGCLRAIILY 150 (235)
T ss_dssp SSSHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4223344568999999999999999999999987
No 60
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=99.84 E-value=2.9e-20 Score=162.15 Aligned_cols=115 Identities=23% Similarity=0.327 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeC-CeEeeHHhhh-
Q psy2636 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCN-GVVLEKQQCQ- 298 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~-g~~~~~~~~~- 298 (335)
....|..++++....+..+|+|||+||+|.+|+.+||++|||++|+++++|+.|+++...++.+.+++ |..+..+...
T Consensus 100 ~~~~~~~l~e~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~ 179 (302)
T 2hc4_A 100 RLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLRSNQSFSLEDMSWSCGGPDFKYCINDVTK 179 (302)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGTEETTTTEEECSSSTTEECHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEecCCCeeecHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999988777777788875 4556555443
Q ss_pred hhhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 299 RSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 299 ~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.++..++++.+++|+.+|++|+||.+||+|||||+||
T Consensus 180 ~g~~~~~~~~l~~~~~~l~~L~ld~~E~alLkAIvLf 216 (302)
T 2hc4_A 180 AGHTLELLEPLVKFQVGLKKLKLHEEEHVLLMAICLL 216 (302)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT
T ss_pred ccCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3554688999999999999999999999999999997
No 61
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=99.83 E-value=4.7e-21 Score=167.48 Aligned_cols=113 Identities=23% Similarity=0.244 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhhhhh
Q psy2636 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSF 301 (335)
Q Consensus 222 ~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~ 301 (335)
.+.+..+++.....+..+|+|||+||+|.+|+.+||++|||++|+++++|+.|+++....+.+++++ ..+..+....++
T Consensus 119 ~~~~~~l~e~~~~~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~~~~~~~l~~~-~~~~~~~~~~g~ 197 (316)
T 1nrl_A 119 FSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWECGR-LSYCLEDTAGGF 197 (316)
T ss_dssp GTTHHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEEETT-EEEEECCCSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEECC-EeecHHHHhccc
Confidence 4567888999999999999999999999999999999999999999999999999988777888754 666655443355
Q ss_pred cHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 302 GDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 302 ~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+.++++.+++|+.+|++|+||++||+|||||+||
T Consensus 198 ~~~~~~~i~~~~~~l~~L~ld~~E~alLkAIvLf 231 (316)
T 1nrl_A 198 QQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLF 231 (316)
T ss_dssp HHHTTSHHHHHHHHHHHTCCCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 5578889999999999999999999999999997
No 62
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=167.20 Aligned_cols=114 Identities=19% Similarity=0.278 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccC--CCeEEeeCCeEeeHHhhhh
Q psy2636 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAE--DTKLIFCNGVVLEKQQCQR 299 (335)
Q Consensus 222 ~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~--~~~~~~~~g~~~~~~~~~~ 299 (335)
...+..+.++..+.+..+|+|||+||+|.+|+.+||++|||++|+++++|+.||++... .+.+++++|..+..+.+..
T Consensus 150 ~~~~~~l~e~a~~~L~~~VewAK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~rs~~~~~~~~ll~~~G~~i~~~~~~~ 229 (352)
T 3tx7_B 150 LSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIAS 229 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHHHHHHHHTCCSSCCBCTTCCBCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcChhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCCcccHHHHHH
Confidence 45677888888999999999999999999999999999999999999999999998754 3678899999998776532
Q ss_pred --hhc-HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 300 --SFG-DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 300 --~~~-~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+.. .++++.+.+++.+|++|+||.+||+|||||+||
T Consensus 230 ~~g~~~~~l~~~l~~l~~~l~~L~ld~~EyalLkAIvLf 268 (352)
T 3tx7_B 230 QAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLF 268 (352)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHS
T ss_pred hccccHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 221 377888999999999999999999999999997
No 63
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=99.82 E-value=7.6e-20 Score=155.05 Aligned_cols=111 Identities=20% Similarity=0.413 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhhh-hhc
Q psy2636 224 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR-SFG 302 (335)
Q Consensus 224 ~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~-~~~ 302 (335)
.+..+.+++...+..+|+|||++|+|.+|+.+||++|||++|.++++++.|+++....+.+++++|..++.+.... +.+
T Consensus 42 ~~~~l~~~~~~~l~~~vewak~ip~F~~L~~~DQ~~LLk~~w~e~~il~~a~rs~~~~~~~~~~~g~~~~~~~~~~~~~~ 121 (240)
T 2p1t_A 42 PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVG 121 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSSSEEECTTSCEEEHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCcccccchhhhhchH
Confidence 4566777888889999999999999999999999999999999999999999988877788899999998876543 444
Q ss_pred HHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 303 DDWLN-AILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 303 ~~~~~-~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.+.+ .+.+++.+|++|++|.+||++||||+||
T Consensus 122 -~~~~~~~~~~~~~l~~L~ld~~E~~~Lkai~l~ 154 (240)
T 2p1t_A 122 -AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF 154 (240)
T ss_dssp -HHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 4444 4568999999999999999999999987
No 64
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=99.81 E-value=2.8e-20 Score=157.14 Aligned_cols=109 Identities=12% Similarity=0.253 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEE---eeCCeEeeHHhhh---hh
Q psy2636 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLI---FCNGVVLEKQQCQ---RS 300 (335)
Q Consensus 227 ~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~---~~~g~~~~~~~~~---~~ 300 (335)
.+.++.+..++.+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++....+.+. +.+|..+..+... .+
T Consensus 45 ~l~~l~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 124 (243)
T 3up3_A 45 DIMNIMDVTMRRFVKMAKRLPAFNDLSQDGKFALLKGGMIEMLTVRGVRRFDSSSGSWTTPTLGESSEVSINMFDQLNAD 124 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHEETTTTEECCTTSCTTCCEEGGGGGGSCTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCeeeecccCCCccccHHHHhhhccc
Confidence 45677788899999999999999999999999999999999999999999988888763 4577777655433 35
Q ss_pred hcHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHcC
Q psy2636 301 FGDDWLNAILEFCQSLHL-MEIDISAFACLCALTLI 335 (335)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~-l~l~~~E~~ll~ai~l~ 335 (335)
++..+++.+.+++.+|++ |++|.+||+|||||+||
T Consensus 125 ~~~~~~~~l~~~~~~~~~~L~ld~~E~alLkAivLf 160 (243)
T 3up3_A 125 VRSEQKMRFLQFFKIFHEDIRSNDLVISMIMLIVLF 160 (243)
T ss_dssp THHHHHHHHHHHHHTSCHHHHTCHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhc
Confidence 553367889999999997 99999999999999987
No 65
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.81 E-value=1.4e-19 Score=156.77 Aligned_cols=113 Identities=15% Similarity=0.282 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCe--------EEeeCCe----
Q psy2636 223 EKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTK--------LIFCNGV---- 290 (335)
Q Consensus 223 ~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~--------~~~~~g~---- 290 (335)
..+..+.++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.||++....+. ++++||.
T Consensus 47 ~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~~~~~~dGs~~~~ 126 (279)
T 1hg4_A 47 GAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERR 126 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTTC---------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccccCcccccc
Confidence 3577888889999999999999999999999999999999999999999999998764332 4555554
Q ss_pred ---------------EeeHHhhh-hhhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 291 ---------------VLEKQQCQ-RSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 291 ---------------~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.+.++... .+++..+.+.+.+++.+|++|++|.+||+|||||+||
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~ 187 (279)
T 1hg4_A 127 SPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILY 187 (279)
T ss_dssp ----CCCEEESSSSCEEEHHHHHHHTCHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHS
T ss_pred ccccccceeeecCCcccchhhHhhcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 33333322 2445333444568999999999999999999999987
No 66
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=99.80 E-value=9.9e-20 Score=153.49 Aligned_cols=111 Identities=23% Similarity=0.393 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhh-h
Q psy2636 221 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQ-R 299 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~-~ 299 (335)
+.+.+..+.++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++..... .+|..+..+... .
T Consensus 40 ~~~~~~~~~~~~~~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~ 115 (232)
T 1osh_A 40 AEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP----SGHSDLLEERIRNS 115 (232)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC----HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhCCccC----CCCceecHHHHHHc
Confidence 34567888899999999999999999999999999999999999999999999998754321 233444443332 2
Q ss_pred hhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 300 SFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 300 ~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
++..++++.+++++.+|++|++|.+||+|||||+||
T Consensus 116 ~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~ 151 (232)
T 1osh_A 116 GISDEYITPMFSFYKSIGELKMTQEEYALLTAIVIL 151 (232)
T ss_dssp SCCTTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 455578899999999999999999999999999986
No 67
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=99.79 E-value=6.5e-19 Score=151.03 Aligned_cols=103 Identities=24% Similarity=0.405 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeE-eeHHhhh---hhhcHHH
Q psy2636 230 SLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVV-LEKQQCQ---RSFGDDW 305 (335)
Q Consensus 230 ~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~-~~~~~~~---~~~~~~~ 305 (335)
......++.+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++.. +.+++++|.. +..+... .+++ ++
T Consensus 80 ~~~~~~v~~~VewAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~-~~ 156 (269)
T 3u9q_A 80 FRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGVLISEGQGFMTREFLKSLRKPFG-DF 156 (269)
T ss_dssp HHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEET--TEEEETTTTEEEEHHHHHHSCTTGG-GS
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCHHHHHHHHHHhhHHHHHHHHHHhcCC--CCeEEeCCCccccHHHHHHhhhhHH-HH
Confidence 33445577899999999999999999999999999999999999987654 4677777765 5655433 3444 67
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 306 LNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 306 ~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
++.+.+|+.+|++|++|++||+|||||+||
T Consensus 157 ~~~l~~~~~~l~~L~ld~~E~alLkAIvLf 186 (269)
T 3u9q_A 157 MEPKFEFAVKFNALELDDSDLAIFIAVIIL 186 (269)
T ss_dssp SHHHHHHHHHHHTTCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 888899999999999999999999999987
No 68
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=150.66 Aligned_cols=109 Identities=25% Similarity=0.328 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCC-CeEEeeCCeEeeHHhh--hhhhc
Q psy2636 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED-TKLIFCNGVVLEKQQC--QRSFG 302 (335)
Q Consensus 226 ~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~-~~~~~~~g~~~~~~~~--~~~~~ 302 (335)
..+.++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++...+ +.+.+++|........ ...+.
T Consensus 40 ~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 119 (244)
T 3cjw_A 40 ENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFM 119 (244)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCC-----------------CCCS
T ss_pred HHHHHHHHHHHHHHHhHHHhCCChhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccchhhhHHHH
Confidence 44667778889999999999999999999999999999999999999999988644 3466777765422111 12333
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 303 DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 303 ~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
+.++.+.+++.+|++|++|.+||+|||||+||
T Consensus 120 -~~~~~~~~~~~~~~~L~ld~~E~~lLkaivL~ 151 (244)
T 3cjw_A 120 -DHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF 151 (244)
T ss_dssp -HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 45677889999999999999999999999987
No 69
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=99.79 E-value=1.9e-19 Score=154.24 Aligned_cols=111 Identities=19% Similarity=0.159 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeE----EeeCCeEeeHHh----
Q psy2636 225 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKL----IFCNGVVLEKQQ---- 296 (335)
Q Consensus 225 ~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~----~~~~g~~~~~~~---- 296 (335)
.+.++++....+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++...+... .+.+|.......
T Consensus 49 ~~~l~e~a~~~L~~~V~wAK~iP~F~~L~~~DQv~LLk~~w~ElllL~~A~rs~~~~~~~~~~~~~~~~il~~~~~~~~~ 128 (268)
T 3f5c_B 49 PQVVCEAASAGLLKTLRFVKYLPCFQILPLDQQLVLVRSCWAPLLMLELAQDHLHFEMMEIPETNTTQEMLTTRRQETEG 128 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHhccccccccchhhhhhhhhccccccccc
Confidence 466778888999999999999999999999999999999999999999999988654421 111222221111
Q ss_pred ------------------hhhhhcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 297 ------------------CQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 297 ------------------~~~~~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
...+...++++.+++|+.+|++|+||.+||+|||||+||
T Consensus 129 ~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~ 185 (268)
T 3f5c_B 129 PEPAEPQATEQPQMVSAEAGHLLPAAAVQAIKSFFFKCWSLNIDTKEYAYLKGTVLF 185 (268)
T ss_dssp --------------------CCCCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHS
T ss_pred ccccccccccccccccchhccccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 011223467889999999999999999999999999987
No 70
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=99.78 E-value=4.4e-19 Score=150.17 Aligned_cols=110 Identities=20% Similarity=0.263 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeEeeHHhhhh-hhcH
Q psy2636 225 IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQR-SFGD 303 (335)
Q Consensus 225 ~~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~ 303 (335)
+..+..++...+..+|+|||+||+|.+|+.+||++|||++|+++++|+.|+++....+.+++++|..++.+.... +..
T Consensus 43 ~~~~~~~~~~~l~~~v~wak~~p~F~~L~~~DQ~~LLk~~~~~~~~L~~a~~s~~~~~~~~~~~g~~~~~~~~~~~~~~- 121 (237)
T 1pzl_A 43 IADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMS- 121 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHSHHHHHHHHHHHHHTTSSSEEECTTSCEEESSCGGGGGGH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeecCCcccCccchhhhhhH-
Confidence 566777788889999999999999999999999999999999999999999998877889999999887654332 333
Q ss_pred HHHHHH-HHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 304 DWLNAI-LEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 304 ~~~~~~-~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
.+...+ .+++.+|++|++|.+||++|+||+||
T Consensus 122 ~~~~~~~~~l~~~l~~L~ld~~E~~~L~ai~l~ 154 (237)
T 1pzl_A 122 RVSIRILDELVLPFQELQIDDNEYAYLKAIIFF 154 (237)
T ss_dssp HHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 445554 48999999999999999999999987
No 71
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=148.35 Aligned_cols=110 Identities=22% Similarity=0.299 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCC-CeEEeeCCeEe----eHHhhh-h
Q psy2636 226 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAED-TKLIFCNGVVL----EKQQCQ-R 299 (335)
Q Consensus 226 ~~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~-~~~~~~~g~~~----~~~~~~-~ 299 (335)
..++++..+.+..+|+|||++|+|.+|+.+||++|||++|+++++|+.|+++...+ +.+.+++|.+. ..+... .
T Consensus 37 ~~~~e~a~~~L~~~VewaK~iP~F~~L~~~DQ~~LLk~~w~el~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 116 (249)
T 3p0u_A 37 HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGD 116 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCTTTGGGCHHHHHHHHHTTHHHHHHHHHHHTTTSCCCCCCCCC-CC---CC---------
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCcchhhcccccccccccccccchhh
Confidence 34667778889999999999999999999999999999999999999999987643 44555555442 112111 1
Q ss_pred hhc--HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 300 SFG--DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 300 ~~~--~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
..+ .+.++.+.+++.+|++|++|.+||+|||||+||
T Consensus 117 ~~~~~~~~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~ 154 (249)
T 3p0u_A 117 RIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLF 154 (249)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 111 256677889999999999999999999999987
No 72
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=99.73 E-value=6.8e-18 Score=141.92 Aligned_cols=106 Identities=8% Similarity=0.123 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhhhccCCCeEEeeCCeE--eeHHh---hhhh-
Q psy2636 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVV--LEKQQ---CQRS- 300 (335)
Q Consensus 227 ~~~~~~~~~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~~~~~~~l~~a~~~~~~~~~~~~~~g~~--~~~~~---~~~~- 300 (335)
.+.++.+..++.+|+|||++|||.+|+.+||++|||++|+|+++|+.|++++.+.+.+.+++|.. +.... +..+
T Consensus 45 ~i~~l~~~~l~~iVefAK~iPgF~~L~~~DQi~LLK~~~~ElliLr~a~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 124 (244)
T 3gyt_A 45 DILNVMDITMRRLVKMAKRLGAFNEISEAGKFSLLKGGMIEMLTIRGVTVFNADKGVWQTPVDGHSQISFNMFDKLRPDI 124 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEECCTTSTTCCEEGGGGGGSCTTT
T ss_pred HHHHHHHHHHHHHHHHHccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEeecCCcccchhHHHHHHhhhcc
Confidence 45567778899999999999999999999999999999999999999999988888898887632 22211 1111
Q ss_pred ---hcHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC
Q psy2636 301 ---FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335 (335)
Q Consensus 301 ---~~~~~~~~~~~~~~~l~~l~l~~~E~~ll~ai~l~ 335 (335)
....+++.+++|..+|+. ++.||+||+||+||
T Consensus 125 ~~~~~~~~~~~~~~f~~~l~~---~~~E~alLkAivLf 159 (244)
T 3gyt_A 125 KDTQKKGFLHFFNLLHSDVRK---NDLAIDIIVLMVLF 159 (244)
T ss_dssp HHHHHHHHHHHHHHSCHHHHT---CHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHH
Confidence 112456667777777776 45699999999997
No 73
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=92.76 E-value=0.096 Score=35.59 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=15.6
Q ss_pred CCCCcccccCCCCCccccC
Q psy2636 38 SPSQLCAVCGDIAACQHYG 56 (335)
Q Consensus 38 ~~~~~C~VCgd~a~g~HyG 56 (335)
.....|.||||.|+||+.-
T Consensus 15 ~g~h~c~vCgd~asfFRRt 33 (87)
T 2lze_A 15 GGKHICAICGNNAEDYKHT 33 (87)
T ss_dssp CCSSSCSSSSSSSSSCTTT
T ss_pred CCCEEccCCCCccceECcc
Confidence 3457799999999998764
No 74
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=90.31 E-value=0.59 Score=30.32 Aligned_cols=24 Identities=21% Similarity=0.592 Sum_probs=17.3
Q ss_pred CCcccccCCCCCccccCCccccccccce
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKGFF 67 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~FF 67 (335)
..-|..|+.+..-. ...|+ |.++|
T Consensus 25 ~nRC~~CrKkvgL~---gf~Cr-Cg~~F 48 (74)
T 1wfl_A 25 KNRCFMCRKKVGLT---GFDCR-CGNLF 48 (74)
T ss_dssp TTBCSSSCCBCGGG---CEECT-TSCEE
T ss_pred CCcChhhCCccccc---CeecC-CCCEe
Confidence 34699999885322 26799 99888
No 75
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.91 E-value=4.4 Score=27.63 Aligned_cols=22 Identities=18% Similarity=0.723 Sum_probs=16.9
Q ss_pred CCCcccccCCCCCccccCCccccc--cc
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEG--CK 64 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~g--Ck 64 (335)
....| ||++...| -.+.|++ |.
T Consensus 35 e~~yC-iC~~~~~g---~MI~CD~~dC~ 58 (91)
T 1weu_A 35 EPTYC-LCHQVSYG---EMIGCDNPDCS 58 (91)
T ss_dssp CCBCS-TTCCBCCS---CCCCCSCSSCS
T ss_pred CCcEE-ECCCCCCC---CEeEecCCCCC
Confidence 44569 99998766 3778999 86
No 76
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=80.89 E-value=1.5 Score=28.38 Aligned_cols=54 Identities=15% Similarity=0.354 Sum_probs=34.6
Q ss_pred CCCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHH
Q psy2636 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102 (335)
Q Consensus 38 ~~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~K 102 (335)
.....|.||++..+.--=..+.|.+|..-|--. |..-.. .....-.|+.|+.++
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~--------Cl~~~~---vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQE--------CYGVPY---IPEGQWLCRHCLQSR 67 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHH--------HHTCSS---CCSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccc--------cCCCCc---CCCCCcCCccCcCcC
Confidence 445679999987644444678899997666444 432211 233567899998764
No 77
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.55 E-value=2.6 Score=25.58 Aligned_cols=16 Identities=44% Similarity=1.265 Sum_probs=11.0
Q ss_pred CCcccccCCCCCccccCCcccc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCE 61 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~ 61 (335)
...|+||| .||..-|.
T Consensus 19 ePvCvvCG------ryGeYICd 34 (60)
T 2yqp_A 19 EPICVVCG------RYGEYICD 34 (60)
T ss_dssp SCCCSSSS------SCCSEECS
T ss_pred CceEEEec------Cccceeec
Confidence 34499999 47766554
No 78
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=74.61 E-value=2.9 Score=28.35 Aligned_cols=54 Identities=15% Similarity=0.354 Sum_probs=34.4
Q ss_pred CCCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHH
Q psy2636 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102 (335)
Q Consensus 38 ~~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~K 102 (335)
..+..|.|||+..+.---..+.|.+|-.-|--. |..-.. .....-.|+.|+.++
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~--------Cl~p~~---vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQE--------CYGVPY---IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHH--------HHTCSS---CCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcc--------cCCCCc---cCCCceECccccCcc
Confidence 345679999987543334678899997666444 432221 234567899998653
No 79
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.53 E-value=8.1 Score=26.34 Aligned_cols=55 Identities=25% Similarity=0.533 Sum_probs=33.6
Q ss_pred CCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHHHH
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCL 104 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl 104 (335)
....|.||++.... --.+.|.+|..-|--. |..-.-=.+ ....-.|..|+.++|.
T Consensus 15 ~~~~C~vC~~~~~~--~~ll~CD~C~~~~H~~--------Cl~Ppl~~~-P~g~W~C~~C~~~~~~ 69 (92)
T 2e6r_A 15 DSYICQVCSRGDED--DKLLFCDGCDDNYHIF--------CLLPPLPEI-PRGIWRCPKCILAECK 69 (92)
T ss_dssp CCCCCSSSCCSGGG--GGCEECTTTCCEECSS--------SSSSCCSSC-CSSCCCCHHHHHHHHS
T ss_pred CCCCCccCCCcCCC--CCEEEcCCCCchhccc--------cCCCCcccC-CCCCcCCccCcCcccc
Confidence 34569999986421 2377899998766544 432100011 2345689999988863
No 80
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=72.81 E-value=3.3 Score=26.34 Aligned_cols=27 Identities=37% Similarity=0.811 Sum_probs=19.7
Q ss_pred CCCcccccCCCCCccccCCccccccccceecc
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~ 70 (335)
+...|.|||+... .+.|.+|-.-|--.
T Consensus 11 ~~~~C~vC~~~~~-----ll~Cd~C~~~~H~~ 37 (66)
T 2lri_C 11 PGARCGVCGDGTD-----VLRCTHCAAAFHWR 37 (66)
T ss_dssp TTCCCTTTSCCTT-----CEECSSSCCEECHH
T ss_pred CCCCcCCCCCCCe-----EEECCCCCCceecc
Confidence 3456999998643 78899998766444
No 81
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=71.79 E-value=2.9 Score=28.05 Aligned_cols=31 Identities=26% Similarity=0.737 Sum_probs=18.0
Q ss_pred CCCCCCCCCCcccccCCC----CCccccCCccccccc
Q psy2636 32 SRPTPPSPSQLCAVCGDI----AACQHYGVRTCEGCK 64 (335)
Q Consensus 32 ~~~~~~~~~~~C~VCgd~----a~g~HyGv~sC~gCk 64 (335)
++|......++|.||||. ++|--| .+|+-|.
T Consensus 8 ~kp~~~~~~qiCqiCGD~VG~~~~Ge~F--VAC~eC~ 42 (93)
T 1weo_A 8 PKPLKNLDGQFCEICGDQIGLTVEGDLF--VACNECG 42 (93)
T ss_dssp SSCCSCCSSCBCSSSCCBCCBCSSSSBC--CSCSSSC
T ss_pred CCcccccCCCccccccCccccCCCCCEE--EeeeccC
Confidence 344444455789999987 344222 3566664
No 82
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.47 E-value=1.5 Score=29.82 Aligned_cols=57 Identities=19% Similarity=0.463 Sum_probs=33.2
Q ss_pred CCCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCc---ccccccccccchhhHH
Q psy2636 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACP---VDKRRRNRCQFCRFQK 102 (335)
Q Consensus 38 ~~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~---i~~~~r~~Cr~CR~~K 102 (335)
.....|.||++..+.---..+-|.+|-.-|--. |..-.-=. ......-.|+.|+.++
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~--------Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQD--------CHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETT--------TSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCc--------cCCCcccccccCCCCCCeeCccccchh
Confidence 345679999987543223478899996655333 32110000 0234456899998775
No 83
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.23 E-value=5.5 Score=24.21 Aligned_cols=26 Identities=19% Similarity=0.694 Sum_probs=19.8
Q ss_pred CCcccccCCCCCccccCCccccccccceecc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~ 70 (335)
+..|.||++.. ..+.|.+|...|.-.
T Consensus 9 ~~~C~vC~~~g-----~ll~Cd~C~~~~H~~ 34 (56)
T 2yql_A 9 EDFCSVCRKSG-----QLLMCDTCSRVYHLD 34 (56)
T ss_dssp CCSCSSSCCSS-----CCEECSSSSCEECSS
T ss_pred CCCCccCCCCC-----eEEEcCCCCcceECc
Confidence 45599999852 588899998777554
No 84
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=64.32 E-value=6.9 Score=32.43 Aligned_cols=46 Identities=52% Similarity=0.915 Sum_probs=39.7
Q ss_pred ChhHHHHHHHhhcchhhhhhhcccCCCCCCCCCHHHHHHHHhhhhh
Q psy2636 160 EPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 205 (335)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~i~~~~~~~p~~~~l~~~~~~~l~~~~~~ 205 (335)
..+..++++...+.....+..|++.+|.|.+|..+|+..|++.+..
T Consensus 50 ~~~~~~~~~~l~~~~i~~iV~wAK~iP~F~~L~~~DQi~LLk~~w~ 95 (257)
T 3v3e_B 50 DAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFL 95 (257)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHH
Confidence 3467788888888888888899999999999999999999887753
No 85
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=64.03 E-value=8.2 Score=24.52 Aligned_cols=50 Identities=20% Similarity=0.535 Sum_probs=28.6
Q ss_pred CcccccCCCC-CccccCCccccc--cccceecccccCCeeecCCCCCCcc---cccccccccchhhHH
Q psy2636 41 QLCAVCGDIA-ACQHYGVRTCEG--CKGFFKRTVQKGSKYVCLADKACPV---DKRRRNRCQFCRFQK 102 (335)
Q Consensus 41 ~~C~VCgd~a-~g~HyGv~sC~g--Ck~FFRR~v~~~~~y~C~~~~~C~i---~~~~r~~Cr~CR~~K 102 (335)
.-| |||... .|. .+.|++ |+..|--. |.+-..=.. .......|..||..|
T Consensus 11 v~C-~C~~~~~~g~---mI~CD~~~C~~W~H~~--------Cvgi~~~~~~~~~~p~~~~C~~Cr~~r 66 (68)
T 2rsd_A 11 VRC-ICSSTMVNDS---MIQCEDQRCQVWQHLN--------CVLIPDKPGESAEVPPVFYCELCRLSR 66 (68)
T ss_dssp ECC-TTCCCSCCSC---EEECSCTTTCEEEETT--------TSCCCSSTTSCCCCCSSCCCHHHHHHH
T ss_pred EEe-ECCCCcCCCC---EEEECCCCCCCeEchh--------hCCCCcccccccCCCCcEECcCccCcc
Confidence 348 899764 332 578986 98877544 432211111 111246799999875
No 86
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=63.97 E-value=7.6 Score=24.24 Aligned_cols=54 Identities=20% Similarity=0.509 Sum_probs=31.3
Q ss_pred CCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhH
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~ 101 (335)
....|.||+.+.... --.+.|+.|...|--. |..-..=.........|..|+-+
T Consensus 5 e~~~C~~C~~~~~~~-~~mI~Cd~C~~WfH~~--------Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAAD-EFWICCDLCEMWFHGK--------CVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSS-SCEEECSSSCCEEETT--------TTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCC-CCEEEccCCCCCCCcc--------ccCcChhHhcCCCcEECCCCcCc
Confidence 345699999875311 1256899999887554 43322111112245678888754
No 87
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=60.89 E-value=3.5 Score=26.12 Aligned_cols=33 Identities=24% Similarity=0.638 Sum_probs=22.8
Q ss_pred CCCCcccccCCCCCccccCCcccc-ccccceeccc
Q psy2636 38 SPSQLCAVCGDIAACQHYGVRTCE-GCKGFFKRTV 71 (335)
Q Consensus 38 ~~~~~C~VCgd~a~g~HyGv~sC~-gCk~FFRR~v 71 (335)
.+..+|.+|+.+...- -..+.|+ +|+-.|-+..
T Consensus 6 ~~~~~C~~C~~p~~~~-~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDD-QDAILCEASCQKWFHRIC 39 (65)
T ss_dssp ---CBCTTTCSBCCTT-SCEEEBTTTTCCEEEHHH
T ss_pred CCcCcCccCCCccCCC-CCeEecccCccccCchhc
Confidence 3456799999885432 2457899 9999998863
No 88
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=60.08 E-value=12 Score=24.13 Aligned_cols=23 Identities=17% Similarity=0.704 Sum_probs=17.1
Q ss_pred CCCCcccccCCCCCccccCCccccc--cc
Q psy2636 38 SPSQLCAVCGDIAACQHYGVRTCEG--CK 64 (335)
Q Consensus 38 ~~~~~C~VCgd~a~g~HyGv~sC~g--Ck 64 (335)
.....| ||++...| -.+.|++ |.
T Consensus 14 ~~~~~C-~C~~~~~g---~MI~CD~~~C~ 38 (71)
T 1wen_A 14 NEPTYC-LCHQVSYG---EMIGCDNPDCS 38 (71)
T ss_dssp TSCCCS-TTCCCSCS---SEECCSCSSCS
T ss_pred CCCCEE-ECCCCCCC---CEeEeeCCCCC
Confidence 345569 89998766 3678999 86
No 89
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=59.83 E-value=3.3 Score=24.77 Aligned_cols=22 Identities=27% Similarity=0.910 Sum_probs=18.4
Q ss_pred CCcccccCCCCCccccCCccccccc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCK 64 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk 64 (335)
..+|..||.. .+-|+..|+-|-
T Consensus 14 k~iCpkC~a~---~~~gaw~CrKCG 35 (51)
T 3j21_g 14 KYVCLRCGAT---NPWGAKKCRKCG 35 (51)
T ss_dssp EEECTTTCCE---ECTTCSSCSSSS
T ss_pred CccCCCCCCc---CCCCceecCCCC
Confidence 4579999987 788999999884
No 90
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=59.35 E-value=4.9 Score=27.33 Aligned_cols=22 Identities=14% Similarity=0.489 Sum_probs=16.4
Q ss_pred CCCcccccCCCCCccccCCccccccc
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCK 64 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk 64 (335)
....| ||+++..| -.+.|++|.
T Consensus 25 ~~~yC-iC~~~~~g---~MI~CD~c~ 46 (90)
T 2jmi_A 25 EEVYC-FCRNVSYG---PMVACDNPA 46 (90)
T ss_dssp CSCCS-TTTCCCSS---SEECCCSSS
T ss_pred CCcEE-EeCCCCCC---CEEEecCCC
Confidence 34569 99988776 377899964
No 91
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=59.34 E-value=9.9 Score=25.67 Aligned_cols=52 Identities=17% Similarity=0.434 Sum_probs=31.3
Q ss_pred CCCCCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhH
Q psy2636 36 PPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101 (335)
Q Consensus 36 ~~~~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~ 101 (335)
.......|.|||+.. ..+.|.+|-.-|--. |..-.- .......-.|+.|+.+
T Consensus 21 ~d~n~~~C~vC~~~g-----~LL~CD~C~~~fH~~--------Cl~PpL-~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKPG-----DLVMCNQCEFCFHLD--------CHLPAL-QDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSSS-----CCEECTTSSCEECTT--------SSSTTC-CCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCCC-----CEEECCCCCCceecc--------cCCCCC-CCCcCCCcCCccccCC
Confidence 334556799999864 588999997666443 321111 0112345678888743
No 92
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=58.25 E-value=7.1 Score=25.15 Aligned_cols=51 Identities=20% Similarity=0.434 Sum_probs=29.6
Q ss_pred CCCCcccccCCCCCccccC--CccccccccceecccccCCeeecCCCCCCcccccccccccchhhH
Q psy2636 38 SPSQLCAVCGDIAACQHYG--VRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101 (335)
Q Consensus 38 ~~~~~C~VCgd~a~g~HyG--v~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~ 101 (335)
.....| |||.+. -+| .+.|+.|...|--. |..-..=. .......|..|+-+
T Consensus 14 ~~~~~C-~C~~~~---~~g~~mI~Cd~C~~W~H~~--------Cvg~~~~~-~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKD---DDGERMLACDGCGVWHHTR--------CIGINNAD-ALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCS---CCSSCEEECSSSCEEEETT--------TTTCCTTS-CCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCcc---CCCCcEEECCCCCCccCCe--------eeccCccc-cCCCcEECCCccCC
Confidence 344569 799874 234 57899998887554 43221100 01245678888754
No 93
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.46 E-value=2.4 Score=31.91 Aligned_cols=32 Identities=28% Similarity=0.655 Sum_probs=26.5
Q ss_pred CCCcccccCCCCC---ccccCCccccccccceecc
Q psy2636 39 PSQLCAVCGDIAA---CQHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 39 ~~~~C~VCgd~a~---g~HyGv~sC~gCk~FFRR~ 70 (335)
.+..|.-||.+.- ...||+.-|-.|.|..|..
T Consensus 28 ~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 62 (149)
T 2crw_A 28 TNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSL 62 (149)
T ss_dssp TTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHH
T ss_pred CCCcCCCCcCCCCCcEEeccCEEEchhcchhhccC
Confidence 4678999997763 4789999999999988763
No 94
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=56.70 E-value=12 Score=23.40 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=15.1
Q ss_pred CcccccCCCCCccccCCccccccccce
Q psy2636 41 QLCAVCGDIAACQHYGVRTCEGCKGFF 67 (335)
Q Consensus 41 ~~C~VCgd~a~g~HyGv~sC~gCk~FF 67 (335)
.-|..|+.+..-. ...| -|.+-|
T Consensus 16 ~rC~~C~kkvgl~---~f~C-rCg~~F 38 (64)
T 1wg2_A 16 NRCFSCNKKVGVM---GFKC-KCGSTF 38 (64)
T ss_dssp CSCTTTCCCCTTS---CEEC-TTSCEE
T ss_pred CcChhhCCccccc---CeEe-ecCCEe
Confidence 4599999885322 3567 487766
No 95
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=56.59 E-value=6.5 Score=24.74 Aligned_cols=55 Identities=18% Similarity=0.497 Sum_probs=32.1
Q ss_pred CCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCc--ccccccccccchhhH
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACP--VDKRRRNRCQFCRFQ 101 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~--i~~~~r~~Cr~CR~~ 101 (335)
....|.|||+..+.---..+.|.+|-.-|--. |..-.-=. |.....-.|+.|+.+
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~--------C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQL--------CHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETT--------TSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhh--------hCCCcccccccCCCCCEECCCCcCc
Confidence 34569999986443333677899997665443 42211000 123345688888765
No 96
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.59 E-value=2.1 Score=31.97 Aligned_cols=32 Identities=25% Similarity=0.563 Sum_probs=26.0
Q ss_pred CCCcccccCCCCC---ccccCCccccccccceecc
Q psy2636 39 PSQLCAVCGDIAA---CQHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 39 ~~~~C~VCgd~a~---g~HyGv~sC~gCk~FFRR~ 70 (335)
.+..|.-||.+.- ...||+..|-.|.|..|..
T Consensus 28 ~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 62 (141)
T 2crr_A 28 DNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNL 62 (141)
T ss_dssp GGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHH
T ss_pred cCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcC
Confidence 3568999997753 3789999999999987663
No 97
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=56.49 E-value=1.8 Score=32.05 Aligned_cols=32 Identities=25% Similarity=0.590 Sum_probs=26.2
Q ss_pred CCCcccccCCCCC---ccccCCccccccccceecc
Q psy2636 39 PSQLCAVCGDIAA---CQHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 39 ~~~~C~VCgd~a~---g~HyGv~sC~gCk~FFRR~ 70 (335)
.+..|.-||.+.- ...||+..|-.|.|..|.-
T Consensus 26 ~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~l 60 (134)
T 2iqj_A 26 DNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNL 60 (134)
T ss_dssp GGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH
T ss_pred CCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcC
Confidence 4578999998763 4789999999999987663
No 98
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.86 E-value=13 Score=24.05 Aligned_cols=28 Identities=18% Similarity=0.599 Sum_probs=20.1
Q ss_pred CCcccccCCCCCccccCCccccccccceecc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~ 70 (335)
...| |||.+..+- -.+.|+.|...|--.
T Consensus 16 ~~~C-~C~~~~~~~--~MI~Cd~C~~WfH~~ 43 (76)
T 1wem_A 16 ALYC-ICRQPHNNR--FMICCDRCEEWFHGD 43 (76)
T ss_dssp CCCS-TTCCCCCSS--CEEECSSSCCEEEHH
T ss_pred CCEE-ECCCccCCC--CEEEeCCCCCcEeCe
Confidence 3558 899886531 257899999887654
No 99
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=55.30 E-value=2 Score=31.97 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=25.8
Q ss_pred CCCcccccCCCCC---ccccCCccccccccceecc
Q psy2636 39 PSQLCAVCGDIAA---CQHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 39 ~~~~C~VCgd~a~---g~HyGv~sC~gCk~FFRR~ 70 (335)
.+..|.-||.+.- ...||+..|-.|.|..|..
T Consensus 24 ~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~L 58 (140)
T 2olm_A 24 HNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGL 58 (140)
T ss_dssp GGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTS
T ss_pred CCCcCCCCCCCCCCceeeccCEEEchhccchhccC
Confidence 3567999997754 3789999999999987653
No 100
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=55.06 E-value=4.7 Score=25.33 Aligned_cols=31 Identities=23% Similarity=0.557 Sum_probs=22.8
Q ss_pred CCcccccCCCCCc----cccCCccccccccceecc
Q psy2636 40 SQLCAVCGDIAAC----QHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 40 ~~~C~VCgd~a~g----~HyGv~sC~gCk~FFRR~ 70 (335)
...|..||-..+- --+|...|++|-.+|+..
T Consensus 7 ~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~ 41 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLH 41 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHH
T ss_pred CCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHc
Confidence 3459999977653 236778899999888754
No 101
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=54.22 E-value=7.5 Score=23.97 Aligned_cols=49 Identities=20% Similarity=0.518 Sum_probs=30.9
Q ss_pred CCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHH
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~K 102 (335)
+..|.|||+. | ..+.|.+|...|--. |..-.-=.+ ....-.|+.|+.+.
T Consensus 5 ~~~C~vC~~~--g---~ll~Cd~C~~~fH~~--------Cl~ppl~~~-p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKS--G---QLLMCDTCSRVYHLD--------CLDPPLKTI-PKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCC--S---SCEECSSSSCEECGG--------GSSSCCSSC-CCSCCCCHHHHHHH
T ss_pred CCCCcCCCCC--C---cEEEcCCCCcCEECC--------cCCCCcCCC-CCCceEChhccChh
Confidence 4569999985 2 588899998877665 432110011 23456788887553
No 102
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=53.75 E-value=2.5 Score=24.28 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=20.7
Q ss_pred cccccCCCCCc----cccCCccccccccceecc
Q psy2636 42 LCAVCGDIAAC----QHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 42 ~C~VCgd~a~g----~HyGv~sC~gCk~FFRR~ 70 (335)
.|..||-..+- --+|..-|+||-.+||..
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 35 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLH 35 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHHHHHh
Confidence 58888866543 125777899999887653
No 103
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=53.65 E-value=14 Score=24.15 Aligned_cols=28 Identities=25% Similarity=0.544 Sum_probs=20.1
Q ss_pred CCCcccccCCC-CCccccCCcccc--ccccceecc
Q psy2636 39 PSQLCAVCGDI-AACQHYGVRTCE--GCKGFFKRT 70 (335)
Q Consensus 39 ~~~~C~VCgd~-a~g~HyGv~sC~--gCk~FFRR~ 70 (335)
....| |||.. ..| -.+.|+ .|...|--.
T Consensus 15 ~~~~C-iC~~~~~~g---~MI~CD~~~C~~W~H~~ 45 (78)
T 1wew_A 15 IKVRC-VCGNSLETD---SMIQCEDPRCHVWQHVG 45 (78)
T ss_dssp CCCCC-SSCCCCCCS---CEEECSSTTTCCEEEHH
T ss_pred CCEEe-ECCCcCCCC---CEEEECCccCCccccCE
Confidence 34569 89998 443 357899 999887554
No 104
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=53.64 E-value=2.1 Score=31.79 Aligned_cols=32 Identities=16% Similarity=0.423 Sum_probs=26.0
Q ss_pred CCCcccccCCCCC---ccccCCccccccccceecc
Q psy2636 39 PSQLCAVCGDIAA---CQHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 39 ~~~~C~VCgd~a~---g~HyGv~sC~gCk~FFRR~ 70 (335)
.+..|.-||.+.- ...||+.-|-.|.|..|.-
T Consensus 35 ~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 69 (138)
T 2owa_A 35 ENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKM 69 (138)
T ss_dssp GGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTT
T ss_pred CCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCC
Confidence 3578999997764 3789999999999987653
No 105
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=53.20 E-value=6.3 Score=27.92 Aligned_cols=24 Identities=29% Similarity=0.944 Sum_probs=18.5
Q ss_pred cccccCCCC----CccccCCcccccccc
Q psy2636 42 LCAVCGDIA----ACQHYGVRTCEGCKG 65 (335)
Q Consensus 42 ~C~VCgd~a----~g~HyGv~sC~gCk~ 65 (335)
.|.-||..- ---|||+..|++|+.
T Consensus 7 ~C~eC~~~~~d~~l~~~F~~~VC~~Cr~ 34 (111)
T 1d4u_A 7 ICEECGKEFMDSYLMDHFDLPTCDDCRD 34 (111)
T ss_dssp ECTTTCCEESCSSSTTTTSCCCCTTTCS
T ss_pred ccccCCChhhHHHHHHhCCeeechhhcc
Confidence 499999553 225999999999975
No 106
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=52.93 E-value=3.9 Score=35.97 Aligned_cols=71 Identities=20% Similarity=0.473 Sum_probs=41.5
Q ss_pred CCCcccccCCCC-Cccc--cCCccccccccceecccccC-----Cee--ecCCCCCCcccccccccccchhhHHHHhcCc
Q psy2636 39 PSQLCAVCGDIA-ACQH--YGVRTCEGCKGFFKRTVQKG-----SKY--VCLADKACPVDKRRRNRCQFCRFQKCLQVGM 108 (335)
Q Consensus 39 ~~~~C~VCgd~a-~g~H--yGv~sC~gCk~FFRR~v~~~-----~~y--~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM 108 (335)
....|..||... .-.| |.|.-|..||.||....-.. ..| -|-.+++... =....|..|==++|+..-+
T Consensus 49 ~e~~C~~CG~~~~~~~HPl~~v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~Gg~l~~--Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 49 IEDICICCGSLQVHTQHPLFEGGICAPCKDKFLDALFLYDDDGYQSYCSICCSGETLLI--CGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp GGGSBTTTCCSCCCSBCSSBSSBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCCSSCEE--CCSTTCCCEECHHHHHHHT
T ss_pred ccceeCCCCCcCccccCCCcCcchhhHHHHHHhccCcccCCCCCcccceEcCCCCeEEE--eCCCCCCcchHHHHHHHhc
Confidence 456799999764 3344 99999999999988866422 122 1333332111 0122555333388988655
Q ss_pred eee
Q psy2636 109 VKE 111 (335)
Q Consensus 109 ~~~ 111 (335)
-+.
T Consensus 127 g~~ 129 (386)
T 2pv0_B 127 GPG 129 (386)
T ss_dssp CTT
T ss_pred Chh
Confidence 444
No 107
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=52.82 E-value=2.3 Score=31.72 Aligned_cols=32 Identities=28% Similarity=0.654 Sum_probs=26.2
Q ss_pred CCCcccccCCCCC---ccccCCccccccccceecc
Q psy2636 39 PSQLCAVCGDIAA---CQHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 39 ~~~~C~VCgd~a~---g~HyGv~sC~gCk~FFRR~ 70 (335)
.+..|.-||.+.- ...||+..|-.|.|..|.-
T Consensus 36 ~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 70 (144)
T 2p57_A 36 TNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSL 70 (144)
T ss_dssp GGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHH
T ss_pred CCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCC
Confidence 4578999997764 3789999999999987753
No 108
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=52.19 E-value=31 Score=22.27 Aligned_cols=25 Identities=20% Similarity=0.538 Sum_probs=16.3
Q ss_pred CCCcccccCCCCCccccCCccccccccce
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFF 67 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FF 67 (335)
...-|..|+.+..-. ...|+ |..-|
T Consensus 24 ~~~RC~~C~kkvgL~---~f~Cr-Cg~~F 48 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT---GFKCR-CGSTF 48 (74)
T ss_dssp CCCBCSSSCCBCTTT---CEECT-TSCEE
T ss_pred cCccchhhcCccccc---ceEec-cCCEe
Confidence 345699999876333 35674 87766
No 109
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=51.74 E-value=3 Score=31.13 Aligned_cols=31 Identities=26% Similarity=0.722 Sum_probs=25.8
Q ss_pred CCCcccccCCCCC---ccccCCccccccccceec
Q psy2636 39 PSQLCAVCGDIAA---CQHYGVRTCEGCKGFFKR 69 (335)
Q Consensus 39 ~~~~C~VCgd~a~---g~HyGv~sC~gCk~FFRR 69 (335)
.+..|.-||.+.- ..-|||.-|-.|.|..|-
T Consensus 37 ~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~ 70 (147)
T 3dwd_A 37 ENNVCFECGAFNPQWVSVTYGIWICLECSGRHRG 70 (147)
T ss_dssp TTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CCCccCCCCCCCCCeEEecccEeEhHhhChHHhc
Confidence 3578999998764 378999999999998764
No 110
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=51.39 E-value=9.2 Score=24.13 Aligned_cols=49 Identities=29% Similarity=0.595 Sum_probs=30.2
Q ss_pred CCCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhH
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~ 101 (335)
.+..|.||++.. ..+.|.+|...|.-. |..-.-=.+ ....-.|..|+.+
T Consensus 7 ~~~~C~vC~~~g-----~ll~CD~C~~~fH~~--------Cl~ppl~~~-P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDGG-----ELICCDGCPRAFHLA--------CLSPPLREI-PSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCCS-----SCEECSSCCCEECTT--------TSSSCCSSC-CSSCCCCHHHHHT
T ss_pred CCCCCccCCCCC-----CEEEcCCCChhhccc--------ccCCCcCcC-CCCCeECccccCc
Confidence 455799999853 588899998776554 432110011 2345678888744
No 111
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.37 E-value=5.5 Score=24.31 Aligned_cols=24 Identities=25% Similarity=0.724 Sum_probs=18.3
Q ss_pred CCcccccCCCCCc-cccCCcccccc
Q psy2636 40 SQLCAVCGDIAAC-QHYGVRTCEGC 63 (335)
Q Consensus 40 ~~~C~VCgd~a~g-~HyGv~sC~gC 63 (335)
..-|.|||.+-.- -.||...|+-|
T Consensus 18 ~~rC~vcGr~~g~iRkfGL~~cR~c 42 (56)
T 3j20_P 18 ARRCIRCGQYGPIIRIQGLMLCRHC 42 (56)
T ss_dssp TCCCSSSCCSSSCCCTTTCCCCHHH
T ss_pred ceEeecCCCCcccccccCChHHHHH
Confidence 3569999988633 55999889777
No 112
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=50.78 E-value=4.6 Score=23.56 Aligned_cols=30 Identities=27% Similarity=0.580 Sum_probs=20.8
Q ss_pred CcccccCCCCCc----cccCCccccccccceecc
Q psy2636 41 QLCAVCGDIAAC----QHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 41 ~~C~VCgd~a~g----~HyGv~sC~gCk~FFRR~ 70 (335)
..|..||-..+- --.|...|++|-.+|+..
T Consensus 5 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 38 (46)
T 1gnf_A 5 RECVNCGATATPLWRRDRTGHYLCNACGLYHKMN 38 (46)
T ss_dssp CCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHT
T ss_pred CCCCCcCCCCCCcCccCCCCCccchHHHHHHHHc
Confidence 458889866543 124677899999887654
No 113
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=50.70 E-value=15 Score=28.75 Aligned_cols=47 Identities=19% Similarity=0.487 Sum_probs=28.9
Q ss_pred CcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhH
Q psy2636 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101 (335)
Q Consensus 41 ~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~ 101 (335)
..|.|||+.. ..+.|.+|-.-|... |..-.-=. .....-.|+.|+.+
T Consensus 3 ~~C~~C~~~g-----~ll~Cd~C~~~~H~~--------Cl~p~l~~-~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPG-----DLVMCNQCEFCFHLD--------CHLPALQD-VPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCS-----SCCCCTTTCCBCCST--------TSTTCCSS-CCCTTCCTTTTSCS
T ss_pred CcCccCCCCC-----ceeECCCCCchhccc--------cCCCCccc-CCCCCCCCcCccCC
Confidence 4599999764 488999997766544 32110001 12344679999754
No 114
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=50.08 E-value=2.6 Score=32.07 Aligned_cols=30 Identities=23% Similarity=0.531 Sum_probs=25.4
Q ss_pred CCcccccCCCCCc---cccCCccccccccceec
Q psy2636 40 SQLCAVCGDIAAC---QHYGVRTCEGCKGFFKR 69 (335)
Q Consensus 40 ~~~C~VCgd~a~g---~HyGv~sC~gCk~FFRR 69 (335)
+..|.-||.+.-. .-|||.-|-.|.|..|-
T Consensus 22 N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~ 54 (163)
T 3sub_A 22 NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRS 54 (163)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CCccccCCCCCCCeEEecCCeeEHHhhhHHhcC
Confidence 5679999987643 78999999999998874
No 115
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=49.39 E-value=38 Score=22.41 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=16.8
Q ss_pred CCcccccCCCCCc---------cccCCccccccc
Q psy2636 40 SQLCAVCGDIAAC---------QHYGVRTCEGCK 64 (335)
Q Consensus 40 ~~~C~VCgd~a~g---------~HyGv~sC~gCk 64 (335)
...|..|+..-.+ +|-....|..|+
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~ 58 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPECFVCADCN 58 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTTCCCSSSC
T ss_pred CCCcccCCCEecccEEEECCceECccCCEecCCC
Confidence 3469999975432 676667777775
No 116
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=49.16 E-value=40 Score=22.43 Aligned_cols=26 Identities=23% Similarity=0.552 Sum_probs=17.1
Q ss_pred CCCcccccCCCCCccccCCccccccccce
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFF 67 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FF 67 (335)
...-|.+|+.+-. .. ....|+ |.+-|
T Consensus 24 ~~~rC~~C~kkvg-l~-~~f~Cr-Cg~~F 49 (85)
T 1wff_A 24 IMKHCFLCGKKTG-LA-TSFECR-CGNNF 49 (85)
T ss_dssp CCCBCSSSCCBCS-SS-SCEECT-TCCEE
T ss_pred cCccchhhCCeec-cc-CCeEcC-CCCEe
Confidence 3456999998752 22 335686 88776
No 117
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=47.49 E-value=3 Score=28.73 Aligned_cols=25 Identities=24% Similarity=0.545 Sum_probs=19.0
Q ss_pred cccccCCCCC------ccccCCc--cccccccc
Q psy2636 42 LCAVCGDIAA------CQHYGVR--TCEGCKGF 66 (335)
Q Consensus 42 ~C~VCgd~a~------g~HyGv~--sC~gCk~F 66 (335)
.|.+|+-+++ .||-|+. .|.||+..
T Consensus 15 TC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 15 TCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEEEECTTTCCE
T ss_pred EccCCCCcchhhcCHHHhhCCEEEEEcCCCccc
Confidence 5999997763 3888875 49999863
No 118
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=45.94 E-value=14 Score=22.79 Aligned_cols=27 Identities=22% Similarity=0.612 Sum_probs=19.6
Q ss_pred CCCcccccCCCCCccccCCccccccccceecc
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~ 70 (335)
....|.||++.. ..+.|.+|-.-|.-.
T Consensus 8 ~~~~C~vC~~~g-----~ll~Cd~C~~~fH~~ 34 (61)
T 1mm2_A 8 HMEFCRVCKDGG-----ELLCCDTCPSSYHIH 34 (61)
T ss_dssp SCSSCTTTCCCS-----SCBCCSSSCCCBCSS
T ss_pred CCCcCCCCCCCC-----CEEEcCCCCHHHccc
Confidence 345699999742 588999997666444
No 119
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=45.30 E-value=6.6 Score=23.97 Aligned_cols=24 Identities=38% Similarity=1.041 Sum_probs=18.5
Q ss_pred CCcccccCCCCCc-cccCCcccccc
Q psy2636 40 SQLCAVCGDIAAC-QHYGVRTCEGC 63 (335)
Q Consensus 40 ~~~C~VCgd~a~g-~HyGv~sC~gC 63 (335)
..-|.|||.+..- --||...|+-|
T Consensus 18 ~~rC~vcGr~~g~iRkfGL~~cR~c 42 (56)
T 3iz6_N 18 SRVCRVCGNSHGLIRKYGLMCCRQC 42 (56)
T ss_dssp CCCCSSCCCSCCCTTTTSCTTHHHH
T ss_pred cceeecCCCCcccccccCCcHHHHH
Confidence 3569999988533 56999999877
No 120
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=44.11 E-value=8.8 Score=24.86 Aligned_cols=30 Identities=13% Similarity=0.498 Sum_probs=21.4
Q ss_pred CCCcccccCCCCCccccCCccccccccceecc
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~ 70 (335)
....|.|||....|- ..+.|++|...|--.
T Consensus 17 ~~~~C~~C~~~~~~~--~mi~CD~C~~wfH~~ 46 (75)
T 2k16_A 17 QIWICPGCNKPDDGS--PMIGCDDCDDWYHWP 46 (75)
T ss_dssp EEECBTTTTBCCSSC--CEEECSSSSSEEEHH
T ss_pred CCcCCCCCCCCCCCC--CEEEcCCCCcccccc
Confidence 345699999886431 258899998887554
No 121
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=43.25 E-value=12 Score=22.11 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=18.8
Q ss_pred cccccCCCCCccccCCccccccccceecc
Q psy2636 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 42 ~C~VCgd~a~g~HyGv~sC~gCk~FFRR~ 70 (335)
.|.|||+...+- -.+.|.+|...|.-.
T Consensus 2 ~C~vC~~~~~~~--~ll~Cd~C~~~~H~~ 28 (51)
T 1f62_A 2 RCKVCRKKGEDD--KLILCDECNKAFHLF 28 (51)
T ss_dssp CCTTTCCSSCCS--CCEECTTTCCEECHH
T ss_pred CCCCCCCCCCCC--CEEECCCCChhhCcc
Confidence 499999875321 367899997766544
No 122
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=43.09 E-value=15 Score=29.25 Aligned_cols=26 Identities=35% Similarity=0.736 Sum_probs=19.0
Q ss_pred CCcccccCCCCCccccCCccccccccceecc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~ 70 (335)
...|.|||+.. ..+.|.+|..-|--.
T Consensus 7 ~~~C~~C~~~g-----~ll~Cd~C~~~~H~~ 32 (207)
T 3u5n_A 7 EDWCAVCQNGG-----DLLCCEKCPKVFHLT 32 (207)
T ss_dssp CSSBTTTCCCE-----EEEECSSSSCEECTT
T ss_pred CCCCCCCCCCC-----ceEEcCCCCCccCCc
Confidence 45699999764 388999997655433
No 123
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=42.17 E-value=6.6 Score=25.31 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=20.6
Q ss_pred CCCcccccCCCCCc-cc-----cCCccccccccceecc
Q psy2636 39 PSQLCAVCGDIAAC-QH-----YGVRTCEGCKGFFKRT 70 (335)
Q Consensus 39 ~~~~C~VCgd~a~g-~H-----yGv~sC~gCk~FFRR~ 70 (335)
....|..||-..+- .. -| ..|+||-.+||..
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~ 43 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKY 43 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHH
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHh
Confidence 34569999966542 22 24 7799999888653
No 124
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=41.82 E-value=8.6 Score=35.16 Aligned_cols=53 Identities=19% Similarity=0.450 Sum_probs=30.6
Q ss_pred CCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhHH
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~K 102 (335)
..-| |||.+..... -.+.|+.|...|--. |.+-..=.........|..|+-++
T Consensus 37 ~~yC-~C~~~~d~~~-~MIqCd~C~~WfH~~--------Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNR-FMIECDICKDWFHGS--------CVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CEET-TTTEECCTTS-CEEEBTTTCCEEEHH--------HHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CeEE-eCCCcCCCCC-CeEEccCCCCceeee--------ecCcCcccccCCCEEECCCCcCCc
Confidence 3458 9998753211 256799999887554 543221111222457899998653
No 125
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.72 E-value=37 Score=21.81 Aligned_cols=25 Identities=24% Similarity=0.608 Sum_probs=16.6
Q ss_pred CcccccCCCCCc---------cccCCcccccccc
Q psy2636 41 QLCAVCGDIAAC---------QHYGVRTCEGCKG 65 (335)
Q Consensus 41 ~~C~VCgd~a~g---------~HyGv~sC~gCk~ 65 (335)
..|..|+..-.+ +|-....|..|+.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~ 49 (79)
T 1x62_A 16 PMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGT 49 (79)
T ss_dssp CCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCC
T ss_pred CccccCCCCccCcEEEECcceeCcCcCeeCCCCC
Confidence 458999876443 6666677777753
No 126
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=40.31 E-value=18 Score=25.87 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=16.9
Q ss_pred hcCCCCCCCCHHHHHHHHHH
Q psy2636 244 DKIPGFSDLCKEDQELLFQS 263 (335)
Q Consensus 244 k~~P~F~~L~~~DQ~~LLk~ 263 (335)
..|+||.+|..+||..|.+.
T Consensus 74 ~~i~G~~~L~~eDQ~~I~~~ 93 (117)
T 1uw0_A 74 TELEGWEELEDNEKEQITQH 93 (117)
T ss_dssp SSSBSTTTSCHHHHHHHHHH
T ss_pred HHCcChHHCCHHHHHHHHHH
Confidence 45899999999999988654
No 127
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=40.27 E-value=5.3 Score=30.86 Aligned_cols=53 Identities=13% Similarity=0.424 Sum_probs=31.8
Q ss_pred CCCcccccCCCCCccccC-CccccccccceecccccCCeeecCCCCCCcccccccccccchhhHH
Q psy2636 39 PSQLCAVCGDIAACQHYG-VRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyG-v~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~K 102 (335)
....| |||..... +| .+.|++|...|--. |.+-..=.........|..|+-.+
T Consensus 7 ~~~~C-~C~~~~~~--~~~mi~Cd~C~~WfH~~--------Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 7 TKLYC-ICKTPEDE--SKFYIGCDRCQNWYHGR--------CVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CCEET-TTTEECCT--TSCEEECTTTCCEEEHH--------HHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCcEe-eCCCCCCC--CCCEeECCCCCchhChh--------hcCCchhhccCccCeecCCCcchh
Confidence 34569 99987421 22 68899998887655 432111111123457899999765
No 128
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=40.17 E-value=18 Score=22.35 Aligned_cols=27 Identities=19% Similarity=0.533 Sum_probs=19.7
Q ss_pred CCCcccccCCCCCccccCCccccccccceecc
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~ 70 (335)
....|.||++. | ..+.|.+|..-|--.
T Consensus 10 ~~~~C~vC~~~--g---~ll~CD~C~~~fH~~ 36 (61)
T 2l5u_A 10 HQDYCEVCQQG--G---EIILCDTCPRAYHMV 36 (61)
T ss_dssp CCSSCTTTSCC--S---SEEECSSSSCEEEHH
T ss_pred CCCCCccCCCC--C---cEEECCCCChhhhhh
Confidence 34679999984 2 578899998766444
No 129
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=40.16 E-value=15 Score=26.11 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=17.2
Q ss_pred hhcCCCCCCCCHHHHHHHHHH
Q psy2636 243 ADKIPGFSDLCKEDQELLFQS 263 (335)
Q Consensus 243 Ak~~P~F~~L~~~DQ~~LLk~ 263 (335)
+..|++|.+|..+||..+.+.
T Consensus 69 ~~~I~G~~~L~~eDQ~~I~~~ 89 (114)
T 1v9x_A 69 VDDVEGIESLRWEDQQKIRKY 89 (114)
T ss_dssp GGGEETTTTSCHHHHHHHHHH
T ss_pred hHHCCChHHCCHHHHHHHHHH
Confidence 445899999999999988553
No 130
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=39.68 E-value=13 Score=26.02 Aligned_cols=31 Identities=23% Similarity=0.554 Sum_probs=22.0
Q ss_pred CCCcccccCCCCCccccCCcccc-ccccceecc
Q psy2636 39 PSQLCAVCGDIAACQHYGVRTCE-GCKGFFKRT 70 (335)
Q Consensus 39 ~~~~C~VCgd~a~g~HyGv~sC~-gCk~FFRR~ 70 (335)
+..+|.||+.+-.... ..+.|+ +|+-.|-..
T Consensus 2 ~~~~C~iC~~p~~~~~-~mi~Cdd~C~~WfH~~ 33 (105)
T 2xb1_A 2 LVYPCGACRSEVNDDQ-DAILCEASCQKWFHRE 33 (105)
T ss_dssp CCCBCTTTCSBCCTTS-CEEECTTTTCCEEEGG
T ss_pred CcCCCCCCCCccCCCC-CEEEecCCcccccccc
Confidence 3457999998843222 256687 999999776
No 131
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=39.51 E-value=11 Score=22.91 Aligned_cols=26 Identities=35% Similarity=0.784 Sum_probs=19.2
Q ss_pred CCCCcccccCCCCCc-cccCCcccccc
Q psy2636 38 SPSQLCAVCGDIAAC-QHYGVRTCEGC 63 (335)
Q Consensus 38 ~~~~~C~VCgd~a~g-~HyGv~sC~gC 63 (335)
....-|.|||.+-.- --||..-|+-|
T Consensus 15 r~~nrC~~cGr~rg~iRkfgl~lcR~c 41 (55)
T 2xzm_N 15 KDSKECRVCGARQGLITKYEMMTCRRC 41 (55)
T ss_dssp GGGCCCTTTCCSSTTCCCSSSCCCHHH
T ss_pred CCceEeecCCCCcchHHHhCCchhhHH
Confidence 345569999987533 55898888877
No 132
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=39.25 E-value=6.3 Score=25.11 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=9.0
Q ss_pred CCCcccccCCCC
Q psy2636 39 PSQLCAVCGDIA 50 (335)
Q Consensus 39 ~~~~C~VCgd~a 50 (335)
+...|.|||.+.
T Consensus 8 ~~~~CP~Cgkp~ 19 (68)
T 1lv3_A 8 ITVNCPTCGKTV 19 (68)
T ss_dssp CEEECTTTCCEE
T ss_pred CcCcCCCCCCcc
Confidence 456799999764
No 133
>1x5v_A PCFK1; inhibitory cystine knot, toxin; HET: HSL; NMR {Psalmopoeus cambridgei}
Probab=38.62 E-value=2.1 Score=22.06 Aligned_cols=21 Identities=33% Similarity=0.830 Sum_probs=13.3
Q ss_pred CCccccccccccc--chhhHHHH
Q psy2636 84 ACPVDKRRRNRCQ--FCRFQKCL 104 (335)
Q Consensus 84 ~C~i~~~~r~~Cr--~CR~~KCl 104 (335)
+|.-...+|.-|+ .|||-|||
T Consensus 8 ~c~~~p~~~~cc~glqcryg~cl 30 (34)
T 1x5v_A 8 NCVYVPAQNPCCRGLQCRYGKCL 30 (34)
T ss_dssp EECSCGGGCCBCTTEEEETEEEE
T ss_pred CCCCCCCCCccceeeeeccCcEE
Confidence 3555555555565 48888886
No 134
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=37.75 E-value=4.4 Score=30.17 Aligned_cols=31 Identities=23% Similarity=0.636 Sum_probs=24.3
Q ss_pred CCcccccCCCCC-------ccc--cCCccccccccceecc
Q psy2636 40 SQLCAVCGDIAA-------CQH--YGVRTCEGCKGFFKRT 70 (335)
Q Consensus 40 ~~~C~VCgd~a~-------g~H--yGv~sC~gCk~FFRR~ 70 (335)
.-.|..||...+ -.| +++..|..|+.||.-.
T Consensus 14 ~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~ 53 (142)
T 2lbm_A 14 IVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSD 53 (142)
T ss_dssp CCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHS
T ss_pred CCEecCCCCccccccccchhcCCCccccccHHHHHHHhcC
Confidence 346999998874 247 9999999999887544
No 135
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=37.64 E-value=12 Score=26.53 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=17.0
Q ss_pred hcCCCCCCCCHHHHHHHHHH
Q psy2636 244 DKIPGFSDLCKEDQELLFQS 263 (335)
Q Consensus 244 k~~P~F~~L~~~DQ~~LLk~ 263 (335)
..|+||.+|..+||..|.+.
T Consensus 76 ~~I~Gf~~L~~eDQe~Ikk~ 95 (111)
T 3odc_A 76 SQLKGFSLLATEDKEALKKQ 95 (111)
T ss_dssp GGEETGGGSCHHHHHHHHHH
T ss_pred HhCCChHHCCHHHHHHHHHH
Confidence 45899999999999988663
No 136
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=37.34 E-value=9 Score=23.36 Aligned_cols=24 Identities=33% Similarity=0.924 Sum_probs=17.6
Q ss_pred CCcccccCCCCCc-cccCCcccccc
Q psy2636 40 SQLCAVCGDIAAC-QHYGVRTCEGC 63 (335)
Q Consensus 40 ~~~C~VCgd~a~g-~HyGv~sC~gC 63 (335)
..-|.|||.+..- --||...|+-|
T Consensus 18 s~rC~vcGr~~g~iRkfGl~lcR~c 42 (56)
T 3u5c_d 18 SRQCRVCSSHTGLIRKYGLNICRQC 42 (56)
T ss_dssp GCCCTTTCCCSSEECGGGCCEEHHH
T ss_pred cceeecCCCCcccccccCcchhHHH
Confidence 3569999987533 45888888776
No 137
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=36.34 E-value=7.8 Score=33.38 Aligned_cols=32 Identities=25% Similarity=0.660 Sum_probs=26.9
Q ss_pred CCCcccccCCCCCc---cccCCccccccccceecc
Q psy2636 39 PSQLCAVCGDIAAC---QHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 39 ~~~~C~VCgd~a~g---~HyGv~sC~gCk~FFRR~ 70 (335)
.+..|.-||.+.-. ..|||.-|-.|.|..|..
T Consensus 36 ~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~ 70 (329)
T 3o47_A 36 ENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGL 70 (329)
T ss_dssp TTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHH
T ss_pred CCCcCCCCCCCCCCeEEecCCEEEChhhhhhhccc
Confidence 35789999987654 689999999999998873
No 138
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=35.28 E-value=63 Score=23.02 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=18.3
Q ss_pred CCcccccCCCCCc----------cccCCccccccccc
Q psy2636 40 SQLCAVCGDIAAC----------QHYGVRTCEGCKGF 66 (335)
Q Consensus 40 ~~~C~VCgd~a~g----------~HyGv~sC~gCk~F 66 (335)
...|..||..-.+ +|-....|..|+.-
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~ 97 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQ 97 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCB
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCc
Confidence 4569999965322 67777778877643
No 139
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=34.84 E-value=11 Score=23.95 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=20.9
Q ss_pred CCcccccCCCCCcc----ccCCccccccccceec
Q psy2636 40 SQLCAVCGDIAACQ----HYGVRTCEGCKGFFKR 69 (335)
Q Consensus 40 ~~~C~VCgd~a~g~----HyGv~sC~gCk~FFRR 69 (335)
...|..||-..+-. -.|..-|++|-.+|+.
T Consensus 9 ~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~ 42 (66)
T 4gat_A 9 PTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKL 42 (66)
T ss_dssp SCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHH
T ss_pred CCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHH
Confidence 34599999776531 1466789999887764
No 140
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=34.22 E-value=20 Score=27.86 Aligned_cols=48 Identities=27% Similarity=0.548 Sum_probs=28.3
Q ss_pred CCcccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchhhH
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~ 101 (335)
+..|.|||+... .+.|.+|..-|--. |..-.- .-.....-.|..|+-.
T Consensus 4 ~~~C~~C~~~g~-----ll~Cd~C~~~~H~~--------C~~p~l-~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 4 EDWCAVCQNGGE-----LLCCEKCPKVFHLS--------CHVPTL-TNFPSGEWICTFCRDL 51 (184)
T ss_dssp CSSCTTTCCCSS-----CEECSSSSCEECTT--------TSSSCC-SSCCSSCCCCTTTSCS
T ss_pred CCccccCCCCCe-----eeecCCCCcccCcc--------ccCCCC-CCCCCCCEECccccCc
Confidence 346999997642 88999997655433 321100 0112344678888743
No 141
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=34.18 E-value=22 Score=22.92 Aligned_cols=24 Identities=33% Similarity=0.728 Sum_probs=18.9
Q ss_pred CcccccCCCCCc-cccCCccccccc
Q psy2636 41 QLCAVCGDIAAC-QHYGVRTCEGCK 64 (335)
Q Consensus 41 ~~C~VCgd~a~g-~HyGv~sC~gCk 64 (335)
-.|..||..+-. .--|+..|..|.
T Consensus 27 y~C~fCgk~~vkR~a~GIW~C~~C~ 51 (72)
T 3jyw_9 27 YDCSFCGKKTVKRGAAGIWTCSCCK 51 (72)
T ss_dssp BCCSSCCSSCBSBCSSSCBCCSSSC
T ss_pred ccCCCCCCceeEecCCCeEECCCCC
Confidence 469999977644 357999999996
No 142
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=33.36 E-value=15 Score=26.21 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=16.6
Q ss_pred cCCCCCCCCHHHHHHHHHH
Q psy2636 245 KIPGFSDLCKEDQELLFQS 263 (335)
Q Consensus 245 ~~P~F~~L~~~DQ~~LLk~ 263 (335)
.|+||.+|..+||..+.+.
T Consensus 90 ~I~Gfd~L~~eDQekIkk~ 108 (116)
T 3od8_A 90 EVDGFSELRWDDQQKVKKT 108 (116)
T ss_dssp HEETGGGSCHHHHHHHHHH
T ss_pred hCcChHHCCHHHHHHHHHH
Confidence 4799999999999998764
No 143
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.28 E-value=54 Score=20.50 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=16.4
Q ss_pred CCCCcccccCCCCCccccCCccccccccce
Q psy2636 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFF 67 (335)
Q Consensus 38 ~~~~~C~VCgd~a~g~HyGv~sC~gCk~FF 67 (335)
....-|..|+.+..-. ...|+ |..-|
T Consensus 13 ~~~~rC~~C~kkvgl~---~f~Cr-Cg~~F 38 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLT---GFMCR-CGTTF 38 (64)
T ss_dssp SSCCCCTTTCCCCCTT---CEECS-SSCEE
T ss_pred CcCCcChhhCCccCcc---CEEee-cCCEe
Confidence 3345699999875322 34675 87666
No 144
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=32.94 E-value=17 Score=22.37 Aligned_cols=21 Identities=19% Similarity=0.765 Sum_probs=15.6
Q ss_pred CCcccccCCCCCccccCCccccc--cc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEG--CK 64 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~g--Ck 64 (335)
...| ||++...| ..+.|++ |.
T Consensus 10 ~~~C-~C~~~~~g---~mi~CD~cdC~ 32 (60)
T 2vnf_A 10 PTYC-LCHQVSYG---EMIGCDNPDCS 32 (60)
T ss_dssp CEET-TTTEECCS---EEEECSCTTCS
T ss_pred CCEE-ECCCcCCC---CEEEeCCCCCC
Confidence 4458 89998765 3678999 76
No 145
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=32.67 E-value=22 Score=21.77 Aligned_cols=20 Identities=45% Similarity=0.949 Sum_probs=14.5
Q ss_pred CCcccccCCCCCccccCCcccccccc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKG 65 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~ 65 (335)
...|.+||..+ ...|.+|+.
T Consensus 13 ~~~C~~C~~~~------~~~Cs~C~~ 32 (60)
T 2od1_A 13 SESCWNCGRKA------SETCSGCNT 32 (60)
T ss_dssp SSCCTTTSSCC------CEECTTTSC
T ss_pred CCccccCCCcc------cccCCCCCC
Confidence 34699999853 467888864
No 146
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.53 E-value=49 Score=20.06 Aligned_cols=19 Identities=26% Similarity=0.969 Sum_probs=12.3
Q ss_pred CcccccCCCCCccccCCcccccccc
Q psy2636 41 QLCAVCGDIAACQHYGVRTCEGCKG 65 (335)
Q Consensus 41 ~~C~VCgd~a~g~HyGv~sC~gCk~ 65 (335)
..|.||+. .+ .| .|-.|..
T Consensus 13 ~~C~vC~~-~~--kY---~CPrC~~ 31 (56)
T 2yqq_A 13 VVCVICLE-KP--KY---RCPACRV 31 (56)
T ss_dssp CCCTTTCS-CC--SE---ECTTTCC
T ss_pred CccCcCcC-CC--ee---eCCCCCC
Confidence 46999998 33 33 5666654
No 147
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.24 E-value=68 Score=21.13 Aligned_cols=27 Identities=26% Similarity=0.572 Sum_probs=18.8
Q ss_pred CCcccccCCCCCc---------cccCCccccccccc
Q psy2636 40 SQLCAVCGDIAAC---------QHYGVRTCEGCKGF 66 (335)
Q Consensus 40 ~~~C~VCgd~a~g---------~HyGv~sC~gCk~F 66 (335)
...|..|+..-.+ +|-....|..|+.-
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~ 60 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNT 60 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCB
T ss_pred CCCCccCCCEecceEEEECCccccccCCccCCCCCC
Confidence 3569999975332 77777888888643
No 148
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=32.06 E-value=21 Score=24.95 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=16.0
Q ss_pred cCCCCCCCCHHHHHHHHHH
Q psy2636 245 KIPGFSDLCKEDQELLFQS 263 (335)
Q Consensus 245 ~~P~F~~L~~~DQ~~LLk~ 263 (335)
.|++|.+|..+||..|.+.
T Consensus 77 ~i~G~~~L~~eDq~~i~~~ 95 (106)
T 2dmj_A 77 EVDGFSELRWDDQQKVKKT 95 (106)
T ss_dssp SEETTTTSCHHHHHHHHHH
T ss_pred hCCChHHCCHHHHHHHHHH
Confidence 4799999999999887543
No 149
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=32.06 E-value=53 Score=19.97 Aligned_cols=20 Identities=45% Similarity=0.949 Sum_probs=14.7
Q ss_pred CCcccccCCCCCccccCCcccccccc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKG 65 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~ 65 (335)
...|.+||..+ ...|.+|+.
T Consensus 15 ~~~C~~C~~~~------~~~Cs~C~~ 34 (60)
T 2dj8_A 15 SESCWNCGRKA------SETCSGCNT 34 (60)
T ss_dssp SCCCSSSCSCC------CEECTTTSC
T ss_pred CcccccCCCCC------cccCCCCCC
Confidence 45699999853 467888874
No 150
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=32.04 E-value=22 Score=21.91 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=8.6
Q ss_pred CCCCCcccccCC
Q psy2636 37 PSPSQLCAVCGD 48 (335)
Q Consensus 37 ~~~~~~C~VCgd 48 (335)
+.+..+|.||+.
T Consensus 8 m~~~~~C~vC~~ 19 (59)
T 1x4s_A 8 MEPAGPCGFCPA 19 (59)
T ss_dssp CCCCEEECSSCT
T ss_pred CCCCCcCcCCCC
Confidence 344568999985
No 151
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=31.83 E-value=9.4 Score=28.91 Aligned_cols=33 Identities=24% Similarity=0.693 Sum_probs=25.8
Q ss_pred CCCcccccCCCC-Cccc--cCCccccccccceeccc
Q psy2636 39 PSQLCAVCGDIA-ACQH--YGVRTCEGCKGFFKRTV 71 (335)
Q Consensus 39 ~~~~C~VCgd~a-~g~H--yGv~sC~gCk~FFRR~v 71 (335)
....|..||... .-.| +.|.-|..|+-||....
T Consensus 35 ~e~~Ct~CG~~~~~~~HPlf~v~lC~~Ck~~y~e~~ 70 (159)
T 3a1b_A 35 IEDICISCGSLNVTLEHPLFVGGMCQNCKNCFLECA 70 (159)
T ss_dssp GGGSBTTTCCSCCCEECSSBSSEECHHHHHHHHHHT
T ss_pred ccCcccCCCCcCccccCCCccchhhHHHHHHHhhcc
Confidence 356799999854 3455 99999999998887654
No 152
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=31.70 E-value=20 Score=24.45 Aligned_cols=29 Identities=17% Similarity=0.517 Sum_probs=20.4
Q ss_pred CCCcccccCCCC---CccccCCccccccccceeccc
Q psy2636 39 PSQLCAVCGDIA---ACQHYGVRTCEGCKGFFKRTV 71 (335)
Q Consensus 39 ~~~~C~VCgd~a---~g~HyGv~sC~gCk~FFRR~v 71 (335)
+...|.+|+..- .|++ -|++|...|++-.
T Consensus 31 M~~~CP~Cq~eL~~~g~~~----hC~~C~~~f~~~a 62 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHA----RCRSCGEFIEMKA 62 (101)
T ss_dssp CCCBCSSSCSBEEEETTEE----EETTTCCEEEEEE
T ss_pred ccccCccCCCcceecCCEE----ECccccchhhccc
Confidence 457899999663 3322 4999998887653
No 153
>2ll1_A U1-TRTX-SP1A; toxin; NMR {Theraphosidae}
Probab=31.20 E-value=2.9 Score=21.19 Aligned_cols=8 Identities=63% Similarity=1.514 Sum_probs=6.1
Q ss_pred chhhHHHH
Q psy2636 97 FCRFQKCL 104 (335)
Q Consensus 97 ~CR~~KCl 104 (335)
.|||-|||
T Consensus 24 qcrygkcl 31 (33)
T 2ll1_A 24 QCRYGKCL 31 (33)
T ss_dssp EEETTEEE
T ss_pred EeecceEe
Confidence 48888876
No 154
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=31.12 E-value=10 Score=27.63 Aligned_cols=31 Identities=19% Similarity=0.569 Sum_probs=24.5
Q ss_pred CCcccccCCCCC-------cc--ccCCccccccccceecc
Q psy2636 40 SQLCAVCGDIAA-------CQ--HYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 40 ~~~C~VCgd~a~-------g~--HyGv~sC~gCk~FFRR~ 70 (335)
.-.|..||.... -. ++.|..|..|+.||...
T Consensus 8 ~~~Ct~Cg~~~~~~~~~~~~~HPll~v~~C~~C~~~y~~~ 47 (129)
T 3ql9_A 8 IVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSD 47 (129)
T ss_dssp SCBCTTTCCBCCCCBTTTEEECTTTCCEEEHHHHHHHHHS
T ss_pred ceEeccCCCCCcccCCCccccCCCcCceeCHhHHhhhhcc
Confidence 346999998873 23 49999999999988665
No 155
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=30.53 E-value=1.1e+02 Score=20.92 Aligned_cols=43 Identities=30% Similarity=0.580 Sum_probs=25.7
Q ss_pred cccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccch
Q psy2636 44 AVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98 (335)
Q Consensus 44 ~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~C 98 (335)
.+......-.|.| ..|.+|.. .-.....|+|. .|.- -.-|..|
T Consensus 19 ~~~e~~~~~~H~g-v~Cd~C~~----~pI~G~RykC~---~C~d----~DLC~~C 61 (98)
T 2dip_A 19 AAAEKERLDKHLG-IPCNNCKQ----FPIEGKCYKCT---ECIE----YHLCQEC 61 (98)
T ss_dssp CCCCSSCCSSCCC-CCCSSSCC----SSCCSCEEEES---SSSS----CEEEHHH
T ss_pred hhhccccccccCC-CCCcCCCC----CCcccCeEECC---CCCC----ccHHHHH
Confidence 3444445568998 78999974 21234678884 3431 2456666
No 156
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=29.90 E-value=30 Score=21.92 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=18.8
Q ss_pred CcccccCCCCCccccC-Cccccccccceecc
Q psy2636 41 QLCAVCGDIAACQHYG-VRTCEGCKGFFKRT 70 (335)
Q Consensus 41 ~~C~VCgd~a~g~HyG-v~sC~gCk~FFRR~ 70 (335)
.-| |||.+..| + .+.|+.|...|--.
T Consensus 20 ~~C-iC~~~~~~---~~MIqCd~C~~WfH~~ 46 (68)
T 3o70_A 20 VTC-FCMKPFAG---RPMIECNECHTWIHLS 46 (68)
T ss_dssp CCS-TTCCCCTT---CCEEECTTTCCEEETT
T ss_pred eEe-ECCCcCCC---CCEEECCCCCcccccc
Confidence 459 99986542 2 57899999887554
No 157
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=29.84 E-value=21 Score=22.77 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=18.3
Q ss_pred cccccCCCCCccccCCccccccccceecc
Q psy2636 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 42 ~C~VCgd~a~g~HyGv~sC~gCk~FFRR~ 70 (335)
.|.|||....+- ..+.|.+|...|-=.
T Consensus 20 ~C~~C~~~~~~~--~ll~CD~C~~~yH~~ 46 (70)
T 3asl_A 20 ACHLCGGRQDPD--KQLMCDECDMAFHIY 46 (70)
T ss_dssp SBTTTCCCSCGG--GEEECTTTCCEEEGG
T ss_pred CCcCCCCcCCCC--CEEEcCCCCCceecc
Confidence 578999765442 467899997666433
No 158
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=29.75 E-value=84 Score=21.40 Aligned_cols=45 Identities=18% Similarity=0.476 Sum_probs=26.2
Q ss_pred cccccCCCCCccccCCccccccccceecccccCCeeecCCCCCCcccccccccccchh
Q psy2636 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99 (335)
Q Consensus 42 ~C~VCgd~a~g~HyGv~sC~gCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR 99 (335)
-| |||....+- -.+.|++|...|--. |..-..=.+. ....|..||
T Consensus 30 rC-iC~~~~~~~--~mi~Cd~C~~w~H~~--------C~~~~~~~~p--~~w~C~~C~ 74 (98)
T 2lv9_A 30 RC-ICGFTHDDG--YMICCDKCSVWQHID--------CMGIDRQHIP--DTYLCERCQ 74 (98)
T ss_dssp CC-TTSCCSCSS--CEEEBTTTCBEEETT--------TTTCCTTSCC--SSBCCTTTS
T ss_pred Ee-ECCCccCCC--cEEEcCCCCCcCcCc--------CCCCCccCCC--CCEECCCCc
Confidence 48 888765321 257899998877554 4322111111 246888886
No 159
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=29.52 E-value=29 Score=21.31 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=14.5
Q ss_pred CCccccCCccccc--cccc
Q psy2636 50 AACQHYGVRTCEG--CKGF 66 (335)
Q Consensus 50 a~g~HyGv~sC~g--Ck~F 66 (335)
++|.-||.+-|+. |+++
T Consensus 2 ~~~~~~~pvRC~r~~Cray 20 (59)
T 2yrc_A 2 SSGSSGEPVLCSRTTCRAV 20 (59)
T ss_dssp CCSSCCCCCBCSCTTTCCB
T ss_pred CccCCCCCcccCCCCCCeE
Confidence 4688899999998 9875
No 160
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=29.32 E-value=16 Score=20.26 Aligned_cols=11 Identities=55% Similarity=0.803 Sum_probs=9.2
Q ss_pred cchhhHHHHhc
Q psy2636 96 QFCRFQKCLQV 106 (335)
Q Consensus 96 r~CR~~KCl~v 106 (335)
++|+|++||+.
T Consensus 6 ~a~a~q~CL~~ 16 (38)
T 1ei0_A 6 QAAEIQKCLQA 16 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46999999985
No 161
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=29.13 E-value=11 Score=33.01 Aligned_cols=31 Identities=26% Similarity=0.615 Sum_probs=25.7
Q ss_pred CCCcccccCCCCC---ccccCCccccccccceec
Q psy2636 39 PSQLCAVCGDIAA---CQHYGVRTCEGCKGFFKR 69 (335)
Q Consensus 39 ~~~~C~VCgd~a~---g~HyGv~sC~gCk~FFRR 69 (335)
.+..|.-||.+.- ...|||..|--|.|..|-
T Consensus 44 ~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~ 77 (368)
T 3jue_A 44 GNAQCCDCREPAPEWASINLGVTLCIQCSGIHRS 77 (368)
T ss_dssp TTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhc
Confidence 3678999998763 378999999999998764
No 162
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=27.57 E-value=51 Score=20.05 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=17.4
Q ss_pred CcccccCCCCCc--cccCCccccccccc
Q psy2636 41 QLCAVCGDIAAC--QHYGVRTCEGCKGF 66 (335)
Q Consensus 41 ~~C~VCgd~a~g--~HyGv~sC~gCk~F 66 (335)
..|..||...-- +.=|...|..|-.-
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCE
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCE
Confidence 359999874433 33478889988543
No 163
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.82 E-value=46 Score=21.63 Aligned_cols=19 Identities=42% Similarity=0.779 Sum_probs=12.2
Q ss_pred cccCCccccccccceeccc
Q psy2636 53 QHYGVRTCEGCKGFFKRTV 71 (335)
Q Consensus 53 ~HyGv~sC~gCk~FFRR~v 71 (335)
.+||.-+|--|..-|-+..
T Consensus 21 ~~~~~r~CarC~~~LG~l~ 39 (76)
T 2csz_A 21 QHYSDRTCARCQESLGRLS 39 (76)
T ss_dssp TTCCCCBCSSSCCBCSSSC
T ss_pred cCCCccchhhhCccccccc
Confidence 4677777777776555443
No 164
>2fqh_A Hypothetical protein TA0938; structural genomics, Zn-binding,, ontario centre for structural proteomics, OCSP, unknown function; NMR {Thermoplasma acidophilum}
Probab=26.66 E-value=28 Score=23.53 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=26.0
Q ss_pred CCcccccCCCCCccccCC------ccccccccceecccc
Q psy2636 40 SQLCAVCGDIAACQHYGV------RTCEGCKGFFKRTVQ 72 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv------~sC~gCk~FFRR~v~ 72 (335)
..-|..||..=.+||=-+ .+|.-|+.=||+.+.
T Consensus 17 ~tGCALCG~tWg~yY~ev~GekLfFCCd~ca~EF~nmi~ 55 (109)
T 2fqh_A 17 SKGCALCGATWGDYHADFLGEDLFFCCDICAAEFMNMMD 55 (109)
T ss_dssp GGSCSSCCCSCCCSSCBCTTCCBSSSCCSSSSCTTSCTH
T ss_pred ccceeeeCCchHHHHHhccCCeEEEEcHHHHHHHHHHHH
Confidence 345999999888888665 378888888888774
No 165
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=26.64 E-value=25 Score=23.80 Aligned_cols=24 Identities=33% Similarity=0.728 Sum_probs=18.9
Q ss_pred CcccccCCCCCc-cccCCccccccc
Q psy2636 41 QLCAVCGDIAAC-QHYGVRTCEGCK 64 (335)
Q Consensus 41 ~~C~VCgd~a~g-~HyGv~sC~gCk 64 (335)
-.|..||..+-. .--|+..|..|.
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~~C~ 61 (92)
T 3izc_m 37 YDCSFCGKKTVKRGAAGIWTCSCCK 61 (92)
T ss_dssp CCCSSSCSSCCEEEETTEEECTTTC
T ss_pred CcCCCCCCceeeecccceEEcCCCC
Confidence 469999977644 357999999995
No 166
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.82 E-value=21 Score=30.35 Aligned_cols=20 Identities=30% Similarity=0.826 Sum_probs=13.6
Q ss_pred ccccCCCCCccccCCcccccccc
Q psy2636 43 CAVCGDIAACQHYGVRTCEGCKG 65 (335)
Q Consensus 43 C~VCgd~a~g~HyGv~sC~gCk~ 65 (335)
|..|| +..||.=..|-.|-.
T Consensus 211 Cs~C~---t~W~~~R~~C~~Cg~ 230 (309)
T 2fiy_A 211 CSLCA---CEWHYVRIKCSHCEE 230 (309)
T ss_dssp ETTTC---CEEECCTTSCSSSCC
T ss_pred eCCCC---CEEeecCcCCcCCCC
Confidence 44444 446888888888865
No 167
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=25.76 E-value=54 Score=26.42 Aligned_cols=29 Identities=21% Similarity=0.443 Sum_probs=19.3
Q ss_pred CCcccccCCCCCccccCCccccccccceecc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR~ 70 (335)
...|.|||+...+- ..+.|.+|..-|.-.
T Consensus 174 ~c~C~vC~~~~~~~--~lL~CD~C~~~yH~~ 202 (226)
T 3ask_A 174 VCACHLCGGRQDPD--KQLMCDECDMAFHIY 202 (226)
T ss_dssp TTSCSSSCCCCC----CCEECSSSCCEECSC
T ss_pred CCCCcCCCCCCCCC--CeEEcCCCCcceeCc
Confidence 34699999865442 467899997666444
No 168
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=25.63 E-value=36 Score=20.52 Aligned_cols=26 Identities=23% Similarity=0.618 Sum_probs=19.0
Q ss_pred CCCcccccCCCC-CccccCCccccccc
Q psy2636 39 PSQLCAVCGDIA-ACQHYGVRTCEGCK 64 (335)
Q Consensus 39 ~~~~C~VCgd~a-~g~HyGv~sC~gCk 64 (335)
....|.-||.-- -..|++...|..|-
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCg 43 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCG 43 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTC
T ss_pred ccccCcCCCCceeEeccCCEEECCCCC
Confidence 456799999733 34788888888874
No 169
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.60 E-value=26 Score=25.74 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=16.6
Q ss_pred hcCCCCCCCCHHHHHHHHHH
Q psy2636 244 DKIPGFSDLCKEDQELLFQS 263 (335)
Q Consensus 244 k~~P~F~~L~~~DQ~~LLk~ 263 (335)
..|++|.+|..+||..|.+.
T Consensus 84 ~~I~Gf~~L~~eDQe~I~~~ 103 (134)
T 2cs2_A 84 SQLKGFSLLATEDKEALKKQ 103 (134)
T ss_dssp GGEETTTTSCHHHHHHHHTT
T ss_pred HhCCChHHCCHHHHHHHHHH
Confidence 34899999999999988554
No 170
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=25.32 E-value=27 Score=23.69 Aligned_cols=24 Identities=29% Similarity=0.847 Sum_probs=18.9
Q ss_pred CcccccCCCCCc-cccCCccccccc
Q psy2636 41 QLCAVCGDIAAC-QHYGVRTCEGCK 64 (335)
Q Consensus 41 ~~C~VCgd~a~g-~HyGv~sC~gCk 64 (335)
-.|..||..+-. .--|+..|..|.
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~~Cg 61 (92)
T 3iz5_m 37 YFCEFCGKFAVKRKAVGIWGCKDCG 61 (92)
T ss_dssp BCCTTTCSSCBEEEETTEEECSSSC
T ss_pred ccCcccCCCeeEecCcceEEcCCCC
Confidence 469999988644 357899999995
No 171
>1p22_C Beta-catenin, Pro2286; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} PDB: 2g57_A*
Probab=25.30 E-value=22 Score=17.72 Aligned_cols=11 Identities=27% Similarity=0.290 Sum_probs=8.8
Q ss_pred CCccccCCccc
Q psy2636 50 AACQHYGVRTC 60 (335)
Q Consensus 50 a~g~HyGv~sC 60 (335)
.+|+|-|+.++
T Consensus 14 DSGI~SGatT~ 24 (26)
T 1p22_C 14 DSGIHSGATTT 24 (26)
T ss_pred ccccccCcccc
Confidence 57889998775
No 172
>2luv_A Integrin alpha-X; myristoylated, DPC micelles, cell adhesion; NMR {Homo sapiens}
Probab=31.11 E-value=15 Score=19.94 Aligned_cols=7 Identities=71% Similarity=1.303 Sum_probs=3.8
Q ss_pred cceeccc
Q psy2636 65 GFFKRTV 71 (335)
Q Consensus 65 ~FFRR~v 71 (335)
|||+|-.
T Consensus 3 GFFKR~~ 9 (35)
T 2luv_A 3 GFFKRQY 9 (35)
Confidence 5665544
No 173
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=24.67 E-value=54 Score=26.61 Aligned_cols=45 Identities=73% Similarity=1.101 Sum_probs=34.7
Q ss_pred hhHHHHHHHhhcchhhhhhhcccCCCCCCCCCHHHHHHHHhhhhh
Q psy2636 161 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 205 (335)
Q Consensus 161 ~~~~~~~~~~l~~~~~~i~~~~~~~p~~~~l~~~~~~~l~~~~~~ 205 (335)
.+....+..........+-.|.+.+|.|..|..+|+..+++....
T Consensus 46 ~~~~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~~~ 90 (244)
T 1pdu_A 46 ADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASL 90 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHH
Confidence 345566666666555666778999999999999999999887753
No 174
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=24.44 E-value=1e+02 Score=19.49 Aligned_cols=20 Identities=25% Similarity=0.753 Sum_probs=14.7
Q ss_pred CCcccccCCCCCccccCCcccccccc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKG 65 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~ 65 (335)
...|.+||.+ +...|.+|+.
T Consensus 15 ~~~C~~C~~~------~~~~Cs~Ck~ 34 (70)
T 2d8q_A 15 RPRCAYCSAE------ASKRCSRCQN 34 (70)
T ss_dssp CCBCSSSCCB------CCCBCTTTSC
T ss_pred CCcCCCCCCc------ccccCCCCCC
Confidence 4579999985 3567888864
No 175
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=24.06 E-value=31 Score=20.16 Aligned_cols=20 Identities=35% Similarity=0.934 Sum_probs=13.8
Q ss_pred CCcccccCCCCCccccCCcccccccc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKG 65 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~ 65 (335)
...|.+||.. +...|.+|+.
T Consensus 9 ~~~C~~C~~~------~~~~C~~C~~ 28 (52)
T 2jw6_A 9 EQSCVNCGRE------AMSECTGCHK 28 (52)
T ss_dssp --CCSSSSSS------CSEECTTTCS
T ss_pred CCcCCCCCCC------CcCcCCCCCC
Confidence 3469999985 3567888864
No 176
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=23.19 E-value=62 Score=22.76 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHh
Q psy2636 235 SVDVIRHFADKIPGFSDLCKEDQELLFQSA 264 (335)
Q Consensus 235 ~i~~vvefAk~~P~F~~L~~~DQ~~LLk~~ 264 (335)
.+....++.+.+|.|..|+.++...|+...
T Consensus 5 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~ 34 (138)
T 1vp6_A 5 DFVRNWQLVAAVPLFQKLGPAVLVEIVRAL 34 (138)
T ss_dssp HHHHHHHHHTTCGGGGGCCHHHHHHHHHHC
T ss_pred hHHHHHHHHHhChhhhcCCHHHHHHHHHhh
Confidence 344566899999999999999888877654
No 177
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.16 E-value=24 Score=23.38 Aligned_cols=25 Identities=32% Similarity=0.768 Sum_probs=18.9
Q ss_pred CcccccCCCCCc-cccCCcccccccc
Q psy2636 41 QLCAVCGDIAAC-QHYGVRTCEGCKG 65 (335)
Q Consensus 41 ~~C~VCgd~a~g-~HyGv~sC~gCk~ 65 (335)
-.|..||..+-. .--|+..|..|.-
T Consensus 36 y~CpfCGk~~vkR~a~GIW~C~kCg~ 61 (83)
T 3j21_i 36 HTCPVCGRKAVKRISTGIWQCQKCGA 61 (83)
T ss_dssp BCCSSSCSSCEEEEETTEEEETTTCC
T ss_pred cCCCCCCCceeEecCcCeEEcCCCCC
Confidence 469999988644 3478899999963
No 178
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=23.11 E-value=15 Score=32.53 Aligned_cols=32 Identities=28% Similarity=0.570 Sum_probs=26.3
Q ss_pred CCCcccccCCCCCc---cccCCccccccccceecc
Q psy2636 39 PSQLCAVCGDIAAC---QHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 39 ~~~~C~VCgd~a~g---~HyGv~sC~gCk~FFRR~ 70 (335)
.+..|.-||.+.-. .-|||.-|-.|.|..|--
T Consensus 33 ~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l 67 (386)
T 3lju_X 33 GNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI 67 (386)
T ss_dssp GGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC
T ss_pred CCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC
Confidence 35679999987643 689999999999987765
No 179
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=23.10 E-value=89 Score=25.18 Aligned_cols=43 Identities=21% Similarity=0.406 Sum_probs=31.5
Q ss_pred HHHHHHHhhcchhhhhhhcccCCCCCCCCCHHHHHHHHhhhhh
Q psy2636 163 KIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 205 (335)
Q Consensus 163 ~~~~~~~~l~~~~~~i~~~~~~~p~~~~l~~~~~~~l~~~~~~ 205 (335)
.+..+..........+-.|...+|.|..|..+|+..+++....
T Consensus 37 ~~~~~~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~ 79 (243)
T 3ltx_A 37 LLNSLVKLAERELVHLINWAKNVPGYTDLSLSDQVHLIECCWM 79 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHH
Confidence 4444555444444556678899999999999999999887653
No 180
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=22.46 E-value=1.1e+02 Score=21.13 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=24.6
Q ss_pred hcHHHHHHHHHHHHHhhcCCCCHHHHHH
Q psy2636 301 FGDDWLNAILEFCQSLHLMEIDISAFAC 328 (335)
Q Consensus 301 ~~~~~~~~~~~~~~~l~~l~l~~~E~~l 328 (335)
..++..+.+.+++..|..-+|+.|||..
T Consensus 23 ~~pev~~~Vr~LVq~Ll~~~i~~EeFt~ 50 (105)
T 2h7b_A 23 ISPEIGERVRTLVLGLVNSTLTIEEFHS 50 (105)
T ss_dssp HCHHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3578889999999999999999999953
No 181
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=22.39 E-value=50 Score=24.65 Aligned_cols=31 Identities=26% Similarity=0.586 Sum_probs=19.4
Q ss_pred CcccccCCCCCcccc----CCccccccccceeccccc
Q psy2636 41 QLCAVCGDIAACQHY----GVRTCEGCKGFFKRTVQK 73 (335)
Q Consensus 41 ~~C~VCgd~a~g~Hy----Gv~sC~gCk~FFRR~v~~ 73 (335)
-.|..||.+.+-..= =...|+||.+ +|.|..
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa--~~~V~~ 139 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGA--ETPIQH 139 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCC--CCCCCC
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCC--Cccccc
Confidence 468888887765432 1346888865 556543
No 182
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=22.28 E-value=36 Score=26.46 Aligned_cols=30 Identities=13% Similarity=0.468 Sum_probs=22.2
Q ss_pred CcccccCCCCCc--cccCCccccccccceecc
Q psy2636 41 QLCAVCGDIAAC--QHYGVRTCEGCKGFFKRT 70 (335)
Q Consensus 41 ~~C~VCgd~a~g--~HyGv~sC~gCk~FFRR~ 70 (335)
..|.||+..-.. ++-..+-|.+|.-.|--.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~ 34 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSK 34 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGG
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchh
Confidence 469999976433 344578999999988665
No 183
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=22.09 E-value=25 Score=22.71 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=19.3
Q ss_pred CCcccccCCCCCc-cccCCcccccccc
Q psy2636 40 SQLCAVCGDIAAC-QHYGVRTCEGCKG 65 (335)
Q Consensus 40 ~~~C~VCgd~a~g-~HyGv~sC~gCk~ 65 (335)
.-.|..||..+-. .--|+..|..|.-
T Consensus 27 ky~C~fCgk~~vkR~a~GIW~C~~C~~ 53 (73)
T 1ffk_W 27 KYKCPVCGFPKLKRASTSIWVCGHCGY 53 (73)
T ss_pred CccCCCCCCceeEEEEeEEEECCCCCc
Confidence 3469999976544 4478899999964
No 184
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=21.71 E-value=74 Score=19.62 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=20.8
Q ss_pred CCcccccCCCCCccccCCccccccccc
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKGF 66 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~F 66 (335)
...|.+|++.--|.-.-..-|+.|+.-
T Consensus 23 pt~C~~C~~~l~Gl~~qg~~C~~C~~~ 49 (65)
T 2enz_A 23 PTFCEHCGTLLWGLARQGLKCDACGMN 49 (65)
T ss_dssp CCBCSSSCCBCCCSSSCSEEESSSCCE
T ss_pred CcCchhcChhheecCCcccccCCCCCc
Confidence 346999999888766677789999743
No 185
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.23 E-value=28 Score=20.53 Aligned_cols=26 Identities=23% Similarity=0.595 Sum_probs=17.7
Q ss_pred CCCcccccCCCC-CccccCCccccccc
Q psy2636 39 PSQLCAVCGDIA-ACQHYGVRTCEGCK 64 (335)
Q Consensus 39 ~~~~C~VCgd~a-~g~HyGv~sC~gCk 64 (335)
..+.|..||... ...|.+-..|..|-
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred ecccCCCCCCceEEecCCCeEECCCCC
Confidence 456799998642 44677777777774
No 186
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=21.13 E-value=84 Score=18.84 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=8.1
Q ss_pred CCcccccCCCCC
Q psy2636 40 SQLCAVCGDIAA 51 (335)
Q Consensus 40 ~~~C~VCgd~a~ 51 (335)
..-|..||-+-+
T Consensus 13 ~~eC~lC~vkYs 24 (55)
T 2yrk_A 13 KPECTLCGVKYS 24 (55)
T ss_dssp CSCCTTTTCCCC
T ss_pred CccccccCcccc
Confidence 345999986643
No 187
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=20.86 E-value=78 Score=26.18 Aligned_cols=40 Identities=28% Similarity=0.373 Sum_probs=30.7
Q ss_pred HHHHhhcchhhhhhhcccCCCCCCCCCHHHHHHHHhhhhh
Q psy2636 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASL 205 (335)
Q Consensus 166 ~~~~~l~~~~~~i~~~~~~~p~~~~l~~~~~~~l~~~~~~ 205 (335)
.+..........+-.|++.+|.|.+|..+|+..|++.+..
T Consensus 80 ~~~~~~~~~v~~iVewAK~iPgF~~L~~~DQi~LLk~~w~ 119 (273)
T 3vi8_A 80 CCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVY 119 (273)
T ss_dssp HHHHHHHHHHHHHHHHGGGSTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCcCcccCCHHHHHHHHHHHHH
Confidence 3334444445567789999999999999999999987753
No 188
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=20.64 E-value=33 Score=27.89 Aligned_cols=9 Identities=44% Similarity=0.914 Sum_probs=7.4
Q ss_pred CcccccCCC
Q psy2636 41 QLCAVCGDI 49 (335)
Q Consensus 41 ~~C~VCgd~ 49 (335)
..|.+||.+
T Consensus 151 ~~C~~cg~~ 159 (244)
T 1u5k_A 151 ARCARCGAP 159 (244)
T ss_dssp SBCTTTCCB
T ss_pred CccccCCCC
Confidence 459999987
No 189
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=20.63 E-value=1.1e+02 Score=21.55 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=20.9
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHHH
Q psy2636 238 VIRHFADKIPGFSDLCKEDQELLFQS 263 (335)
Q Consensus 238 ~vvefAk~~P~F~~L~~~DQ~~LLk~ 263 (335)
.+.++.+.+|.|..|+.++...|+..
T Consensus 20 ~~~~~l~~~~~f~~l~~~~~~~l~~~ 45 (139)
T 3ocp_A 20 LIKEAILDNDFMKNLELSQIQEIVDC 45 (139)
T ss_dssp HHHHHHHHCTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCHhhhcCCHHHHHHHHHh
Confidence 44578889999999999888777654
No 190
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.61 E-value=40 Score=21.92 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=18.5
Q ss_pred CCcccccCCCCCccccCCccccccccceec
Q psy2636 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKR 69 (335)
Q Consensus 40 ~~~C~VCgd~a~g~HyGv~sC~gCk~FFRR 69 (335)
.-.|.|||....+ -..+.|.+|...|-=
T Consensus 26 ~c~C~vC~~~~~~--~~ll~CD~C~~~yH~ 53 (77)
T 2e6s_A 26 SCSCRVCGGKHEP--NMQLLCDECNVAYHI 53 (77)
T ss_dssp SSSCSSSCCCCCS--TTEEECSSSCCEEET
T ss_pred CCCCcCcCCcCCC--CCEEEcCCCCccccc
Confidence 3468999976533 246679999766533
No 191
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=20.54 E-value=1e+02 Score=21.58 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHHhhcCCCCHHHHHH
Q psy2636 302 GDDWLNAILEFCQSLHLMEIDISAFAC 328 (335)
Q Consensus 302 ~~~~~~~~~~~~~~l~~l~l~~~E~~l 328 (335)
.++..+.+.+++..|..-+|+.|||..
T Consensus 39 spev~~~Vr~LVq~Ll~~~i~~EeFt~ 65 (114)
T 2p6v_A 39 STETAANVXELVQNLLDGXIEAEDFTS 65 (114)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 457788999999999999999999953
Done!