RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2636
(335 letters)
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 232 bits (592), Expect = 5e-73
Identities = 76/333 (22%), Positives = 130/333 (39%), Gaps = 53/333 (15%)
Query: 4 GRSSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGC 63
+ S + + S +CA+CGD ++ +HYGV +CEGC
Sbjct: 101 SPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGC 160
Query: 64 KGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRG 123
KGFFKRTV+K Y C +K C +DKR+RNRCQ+CR+QKCL +GM +E V+ + +G+
Sbjct: 161 KGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDR 220
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
+ + P ++ A E
Sbjct: 221 NENEVESTSSANEDMPVERILEAELAVEPKTET--------------------------- 253
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
Y E N P + + + + + +A
Sbjct: 254 -------------------------YVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWA 288
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
+IP FS+L +DQ +L ++ EL + ++R+ A ++ G+ + + +
Sbjct: 289 KRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVG 348
Query: 304 DWLNAIL-EFCQSLHLMEIDISAFACLCALTLI 335
+ +L E + M++D + CL A+ L
Sbjct: 349 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLF 381
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 216 bits (551), Expect = 2e-67
Identities = 78/333 (23%), Positives = 127/333 (38%), Gaps = 16/333 (4%)
Query: 6 SSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKG 65
S+ + S + P+ + C VCGD A+ HYGV CEGCKG
Sbjct: 16 YQSAIKVEPASPPYYSEKTQLYNKPHEEPSNSLMAIECRVCGDKASGFHYGVHACEGCKG 75
Query: 66 FFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSL-KGRRGR 124
FF+RT++ Y D C + K+ RN+CQ+CRFQKCL VGM +R + + + +
Sbjct: 76 FFRRTIRLKLIYDR-CDLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEK 134
Query: 125 LPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 184
L ++ S + + L + + + + DK
Sbjct: 135 LLAEISSDIDQLNPES--------ADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDK 186
Query: 185 IPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 244
P + + L+ ++ + P + Q +V I +A
Sbjct: 187 SPF---VIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAK 243
Query: 245 KIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVL--EKQQCQRSFG 302
IPGF +L DQ L + E+ LA +D LI + E + R
Sbjct: 244 SIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLM-NKDGVLISEGQGFMTREFLKSLRKPF 302
Query: 303 DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
D++ EF + +E+D S A A+ ++
Sbjct: 303 GDFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 335
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate
response gene product, transcription factor, monomeric
protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus}
SCOP: g.39.1.2
Length = 89
Score = 161 bits (409), Expect = 3e-50
Identities = 79/87 (90%), Positives = 83/87 (95%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQK
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 62
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKP 129
CL VGMVKEVVRTDSLKGRRGRLPSKP
Sbjct: 63 CLAVGMVKEVVRTDSLKGRRGRLPSKP 89
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD,
transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Length = 271
Score = 166 bits (422), Expect = 7e-50
Identities = 109/229 (47%), Positives = 139/229 (60%), Gaps = 45/229 (19%)
Query: 108 MVKEVVRTDSLKGRRGRLPSKPKSPQE-SPPSPPVSLITALYREPNPLEPPIAEPEKIQQ 166
MVKEVVRTDSLKGRRGRLPSKPKSPQE SPPSPPVSLI+AL R P + + +
Sbjct: 1 MVKEVVRTDSLKGRRGRLPSKPKSPQEPSPPSPPVSLISALVRAHVDSNPAMTSLDYSR- 59
Query: 167 FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQ 226
++ + + + IQ
Sbjct: 60 ------------------------------------------FQANPDYQMSGDDTQHIQ 77
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
QFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LELFVLRLAYR+ + KLIF
Sbjct: 78 QFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIF 137
Query: 287 CNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
CNGVVL + QC R FG +W+++I+EF +L M IDISAF+C+ AL ++
Sbjct: 138 CNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 185
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger,
DNA- binding domain, transcription factor, FTZ-F1,
C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Length = 113
Score = 159 bits (403), Expect = 5e-49
Identities = 47/104 (45%), Positives = 61/104 (58%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
+LC VCGD + HYG+ TCE CKGFFKRTVQ +Y C+ ++ C +DK +R
Sbjct: 3 FGDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRK 62
Query: 94 RCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPP 137
RC +CRFQKCL VGM E VR D ++G R + K +
Sbjct: 63 RCPYCRFQKCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQ 106
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA
binding domain, HERR2, hormone nuclear receptor; NMR
{Homo sapiens} SCOP: g.39.1.2
Length = 98
Score = 158 bits (401), Expect = 5e-49
Identities = 49/95 (51%), Positives = 61/95 (64%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 3 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 62
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQ 133
RF K L+VGM+KE VR D ++G R + + S
Sbjct: 63 RFMKALKVGMLKEGVRLDRVRGGRQKYKRRLDSEN 97
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor,
protein-DNA, transcription/DNA complex; HET: DNA; 1.70A
{Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Length = 86
Score = 154 bits (391), Expect = 1e-47
Identities = 45/86 (52%), Positives = 57/86 (66%)
Query: 37 PSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQ 96
P + C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ
Sbjct: 1 PRIYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQ 60
Query: 97 FCRFQKCLQVGMVKEVVRTDSLKGRR 122
+CR QKC +VGM KE VR D K ++
Sbjct: 61 YCRLQKCFEVGMSKESVRNDRNKKKK 86
>2han_A Protein ultraspiracle; transcription regulation, transcription
factor, DNA-binding, nuclear protein, nuclear receptor,
zinc finger; 1.95A {Drosophila melanogaster} SCOP:
g.39.1.2
Length = 93
Score = 154 bits (391), Expect = 2e-47
Identities = 46/91 (50%), Positives = 61/91 (67%)
Query: 32 SRPTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRR 91
S LC++CGD A+ +HYGV +CEGCKGFFKRTV+K Y C ++ C +DKR+
Sbjct: 2 SNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQ 61
Query: 92 RNRCQFCRFQKCLQVGMVKEVVRTDSLKGRR 122
RNRCQ+CR+QKCL GM +E V+ + R
Sbjct: 62 RNRCQYCRYQKCLTCGMKREAVQEERQGIHR 92
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex,
transcription/DNA complex; 2.70A {Homo sapiens} SCOP:
g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Length = 110
Score = 152 bits (386), Expect = 1e-46
Identities = 37/106 (34%), Positives = 59/106 (55%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+ ++C VCGD A H+ TCEGCKGFF+R++++ + + C + C + K R CQ
Sbjct: 4 NVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQA 63
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSL 143
CR ++C+ +GM+KE + TD R+ + K K + S L
Sbjct: 64 CRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEEEALKDSLRPKL 109
>2han_B Ecdysone receptor; transcription regulation, transcription factor,
DNA-binding, nuclear protein, nuclear receptor, zinc
finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
PDB: 1r0o_B 1r0n_B
Length = 119
Score = 151 bits (384), Expect = 4e-46
Identities = 44/107 (41%), Positives = 57/107 (53%)
Query: 34 PTPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRN 93
P +LC VCGD A+ HY TCEGCKGFF+R+V K + Y C +AC +D R
Sbjct: 2 SAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRR 61
Query: 94 RCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPP 140
+CQ CR +KCL VGM E V ++ + R K + SP
Sbjct: 62 KCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPS 108
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor,
protein-DNA, transcription/DNA complex; HET: DNA; 1.70A
{Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A
1r0o_A 2nll_A*
Length = 85
Score = 150 bits (380), Expect = 5e-46
Identities = 45/83 (54%), Positives = 62/83 (74%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+
Sbjct: 3 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQY 62
Query: 98 CRFQKCLQVGMVKEVVRTDSLKG 120
CR+QKCL +GM +E V+ + +G
Sbjct: 63 CRYQKCLAMGMKREAVQEERQRG 85
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear
receptor, protein-DNA complex, transcripti complex;
3.00A {Homo sapiens} SCOP: g.39.1.2
Length = 99
Score = 149 bits (379), Expect = 1e-45
Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 7/104 (6%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+C
Sbjct: 2 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYC 61
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVS 142
R+QKCL +GM +E V+ + R K ++ E + +
Sbjct: 62 RYQKCLAMGMKREAVQEE-------RQRGKDRNENEVESTSSAN 98
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with
drug, transcription/DNA complex; HET: DNA; 2.40A {Homo
sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Length = 84
Score = 148 bits (375), Expect = 3e-45
Identities = 41/83 (49%), Positives = 54/83 (65%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ
Sbjct: 2 KETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQA 61
Query: 98 CRFQKCLQVGMVKEVVRTDSLKG 120
CR +KC +VGM+K +R D G
Sbjct: 62 CRLRKCYEVGMMKGGIRKDRRGG 84
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery,
lever ARM, transcription, hormone; HET: DNA; 1.61A
{Rattus norvegicus} PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A*
3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A*
3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A
2gda_A 1rgd_A ...
Length = 90
Score = 148 bits (375), Expect = 4e-45
Identities = 37/88 (42%), Positives = 47/88 (53%)
Query: 40 SQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCR 99
S +C VC D A+ HYGV TC CK FFKR V+ Y+C C +DK RR C CR
Sbjct: 2 SHMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACR 61
Query: 100 FQKCLQVGMVKEVVRTDSLKGRRGRLPS 127
++KCLQ GM E +T + +
Sbjct: 62 YRKCLQAGMNLEARKTKKKIKGIQQATA 89
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear
protein, receptor, transcription regulation, zinc, EAR3,
erbal3 tfcoup1; NMR {Homo sapiens}
Length = 89
Score = 148 bits (375), Expect = 4e-45
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 7/93 (7%)
Query: 35 TPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNR 94
+ S C VCGD ++ +HYG TCEGCK FFKR+V++ Y C A++ CP+D+ RN+
Sbjct: 2 SSGSSGIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQ 61
Query: 95 CQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPS 127
CQ+CR +KCL+VGM +E V +RG PS
Sbjct: 62 CQYCRLKKCLKVGMRREAV-------QRGSGPS 87
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex,
transcription/DNA complex; 3.10A {Rattus norvegicus}
SCOP: g.39.1.2
Length = 105
Score = 148 bits (374), Expect = 8e-45
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 38 SPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQF 97
P + C +CGD A+ HYG TC CK FFKR + KY+C + C +DK RR C
Sbjct: 5 PPQKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPS 64
Query: 98 CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPS 138
CR +KC + GM + L + + + ++ P+
Sbjct: 65 CRLRKCYEAGMTLGARKLKKLGNLKLQ--EEGENSSAGSPT 103
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain,
nuclear; zinc finger; 2.00A {Homo sapiens}
Length = 78
Score = 143 bits (363), Expect = 1e-43
Identities = 38/75 (50%), Positives = 54/75 (72%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQ 101
LCA+CGD A +HYG +C+GCKGFF+R+V+K Y C + C VDK +RN+C++CR +
Sbjct: 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLK 61
Query: 102 KCLQVGMVKEVVRTD 116
KC + GM KE V+ +
Sbjct: 62 KCFRAGMKKEAVQNE 76
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding,
reverb, REV- ERB, transcription regulation,
transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo
sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Length = 94
Score = 144 bits (364), Expect = 2e-43
Identities = 45/97 (46%), Positives = 61/97 (62%), Gaps = 8/97 (8%)
Query: 35 TPPSPSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV-CLADKACPVDKRRRN 93
LC VCGD+A+ HYGV CEGCKGFF+R++Q+ +Y CL ++ C + + RN
Sbjct: 2 KLNGMVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRN 61
Query: 94 RCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPK 130
RCQ CRF+KCL VGM ++ V R GR+P + K
Sbjct: 62 RCQQCRFKKCLSVGMSRDAV-------RFGRIPKREK 91
>2nll_B Protein (thyroid hormone receptor); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, zinc-
finger, multigene family; HET: DNA 5IU; 1.90A {Homo
sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Length = 103
Score = 142 bits (361), Expect = 7e-43
Identities = 43/96 (44%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQK--GSKYVCLADKACPVDKRRRNRCQFC 98
+LC VCGD A HY TCEGCKGFF+RT+QK Y C + C +DK RN+CQ C
Sbjct: 2 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQEC 61
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQE 134
RF+KC+ VGM ++V DS + + +L + + +
Sbjct: 62 RFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRR 97
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor,
coactivator, ligand, hormone/growth factor receptor
complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Length = 303
Score = 144 bits (364), Expect = 6e-41
Identities = 43/229 (18%), Positives = 79/229 (34%), Gaps = 47/229 (20%)
Query: 108 MVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVS-LITALYREPNPLEPPIAEPEKIQQ 166
M KE VR D + ++ + PSK + + + + L + + P + + K
Sbjct: 1 MSKESVRND--RNKKKKEPSKQECTESYEMTAELDDLTEKIRKAHQETFPSLCQLGKYTT 58
Query: 167 FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQ 226
+ +
Sbjct: 59 --------------------------------------------NSSADHRVRLDLGLWD 74
Query: 227 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
+F L T + I FA ++PGF+ L DQ L ++A L++ +LR+ R E + F
Sbjct: 75 KFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTF 134
Query: 287 CNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+G+ L + Q + + + F L +E+D + L A+ LI
Sbjct: 135 SDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLI 183
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear
receptor, ECR, USP, hormone/growth factor receptor
complex; HET: P1A; 3.07A {Bemisia tabaci}
Length = 310
Score = 142 bits (360), Expect = 3e-40
Identities = 47/258 (18%), Positives = 90/258 (34%), Gaps = 47/258 (18%)
Query: 79 CLADKACPVDKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPS 138
+ + C V KR+ + Q + + + ++ + R P +
Sbjct: 17 VVPEFQCAV-KRKEKKAQKDKDKPNSTTSCSPDGIKQEIDPQRLDTDSQLLSVNGVKPIT 75
Query: 139 PP-VSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 197
P LI L V + P D+
Sbjct: 76 PEQEELIHRL-----------------------------VYFQNEYEHPSPEDI------ 100
Query: 198 LLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 257
P E +AE E+ + + +V +I F+ ++PGF L +EDQ
Sbjct: 101 ---------KRIVNAAPEEENVAE-ERFRHITEITILTVQLIVEFSKRLPGFDKLIREDQ 150
Query: 258 ELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLH 317
L ++ S E+ + R+A R AE ++F ++ + D + +L FC+ +
Sbjct: 151 IALLKACSSEVMMFRMARRYDAETDSILFATNQPYTRESYTVAGMGDTVEDLLRFCRHMC 210
Query: 318 LMEIDISAFACLCALTLI 335
M++D + +A L A+ +
Sbjct: 211 AMKVDNAEYALLTAIVIF 228
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor,
ligand-binding domain, hormone/growth factor receptor
complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Length = 244
Score = 133 bits (336), Expect = 2e-37
Identities = 88/120 (73%), Positives = 102/120 (85%), Gaps = 1/120 (0%)
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
E ++E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRLAY
Sbjct: 40 EQSMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAY 99
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R R +DTKLIFCNG VL + QC RSFG +WLN I+EF +SLH +EIDISAFACLCALTLI
Sbjct: 100 RARIDDTKLIFCNGTVLHRTQCLRSFG-EWLNDIMEFSRSLHNLEIDISAFACLCALTLI 158
Score = 70.9 bits (174), Expect = 2e-14
Identities = 47/84 (55%), Positives = 57/84 (67%), Gaps = 13/84 (15%)
Query: 138 SPPVSLITALYR-----EPNP--------LEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 184
+SLITAL R P+P E ++E +K+QQFY LLT+SVDVI+ FA+K
Sbjct: 10 HGAISLITALVRSHVDTTPDPSCLDYSHYEEQSMSEADKVQQFYQLLTSSVDVIKQFAEK 69
Query: 185 IPGFSDLCKEDQELLFQSASLELF 208
IPG+ DL EDQELLFQSASLELF
Sbjct: 70 IPGYFDLLPEDQELLFQSASLELF 93
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo
ligand binding pocket, hormone/growth factor complex;
HET: P1A; 2.75A {Tribolium castaneum}
Length = 248
Score = 130 bits (329), Expect = 2e-36
Identities = 29/142 (20%), Positives = 64/142 (45%)
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 253
Q + ++ P++ + + + +V +I FA ++PGF L
Sbjct: 23 YFQNEYEHPSEEDVKRIINQPMDGEDQCDVRFRHITEITILTVQLIVEFAKRLPGFDKLL 82
Query: 254 KEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFC 313
+EDQ L ++ S E+ + R+A R + ++F N + + + + +L FC
Sbjct: 83 REDQIALLKACSSEVMMFRMARRYDVQTDSILFVNNQPYSRDSYNLAGMGETIEDLLHFC 142
Query: 314 QSLHLMEIDISAFACLCALTLI 335
++++ M +D + +A L A+ +
Sbjct: 143 RTMYSMRVDNAEYALLTAIVIF 164
Score = 65.4 bits (160), Expect = 2e-12
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 151 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P++ + + + +V +I FA ++PGF L +EDQ L ++ S E+
Sbjct: 41 NQPMDGEDQCDVRFRHITEITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVM 98
>1yje_A Orphan nuclear receptor NR4A1; NGFI-B, NUR77, ligand-binding
domain, novel coregulator interface, cell-specific;
2.40A {Rattus norvegicus} PDB: 2qw4_A
Length = 264
Score = 130 bits (329), Expect = 4e-36
Identities = 76/211 (36%), Positives = 106/211 (50%), Gaps = 45/211 (21%)
Query: 126 PSKPKSPQESPPSP-PVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 184
P+ PP P +L+T+L R A + L +
Sbjct: 12 GLVPRGSHMQPPDASPTNLLTSLIR---------AHLDSGPNTAKLDYSK---------- 52
Query: 185 IPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 244
++E + +QQFY LL+ S+DVIR +A+
Sbjct: 53 ------------------------FQELVLPRFGKEDAGDVQQFYDLLSGSLDVIRKWAE 88
Query: 245 KIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDD 304
KIPGF +L DQ+LL +SA LELF+LRLAYR++ + KLIFC+G+VL + QC R FG D
Sbjct: 89 KIPGFIELSPGDQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-D 147
Query: 305 WLNAILEFCQSLHLMEIDISAFACLCALTLI 335
W++ IL F +SLH + +D+ AFACL AL LI
Sbjct: 148 WIDNILAFSRSLHSLGVDVPAFACLSALVLI 178
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity,
retinoid ligand complexes, drug design, antiparallel
alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A*
1exa_A* 1exx_A* 1dkf_B*
Length = 236
Score = 127 bits (320), Expect = 3e-35
Identities = 35/145 (24%), Positives = 61/145 (42%)
Query: 191 LCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 250
+ K QE L + + + +F L T + I FA ++PGF+
Sbjct: 12 VSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFT 71
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAIL 310
L DQ L ++A L++ +LR+ R E + F +G+ L + Q + + +
Sbjct: 72 GLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVF 131
Query: 311 EFCQSLHLMEIDISAFACLCALTLI 335
F L +E+D + L A+ LI
Sbjct: 132 AFAGQLLPLEMDDTETGLLSAICLI 156
Score = 66.2 bits (162), Expect = 8e-13
Identities = 16/75 (21%), Positives = 29/75 (38%)
Query: 134 ESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 193
P + + + + +F L T + I FA ++PGF+ L
Sbjct: 16 HQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSI 75
Query: 194 EDQELLFQSASLELF 208
DQ L ++A L++
Sbjct: 76 ADQITLLKAACLDIL 90
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear
receptor, structural proteomic europe, spine, structural
genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB:
1z5x_U* 2q60_A
Length = 282
Score = 128 bits (323), Expect = 3e-35
Identities = 32/245 (13%), Positives = 72/245 (29%), Gaps = 56/245 (22%)
Query: 92 RNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREP 151
+ + +E V+ + +G+ + + P ++ A
Sbjct: 7 HHHHSSGLVPR---GSHKREAVQEERQRGKDRNENEVESTSSANEDMPVERILEAELAVE 63
Query: 152 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYRE 211
E Y E
Sbjct: 64 PKTET----------------------------------------------------YVE 71
Query: 212 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVL 271
N P + + + + + +A +IP FS+L +DQ +L ++ EL +
Sbjct: 72 ANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIA 131
Query: 272 RLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAIL-EFCQSLHLMEIDISAFACLC 330
++R+ A ++ G+ + + + + +L E + M++D + CL
Sbjct: 132 SFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLR 191
Query: 331 ALTLI 335
A+ L
Sbjct: 192 AIVLF 196
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme,
NR1D2, DNA-binding, metal-binding, nucleus, repressor,
transcription; HET: HEM; 1.90A {Homo sapiens} PDB:
2v7c_A 2v0v_A
Length = 199
Score = 125 bits (317), Expect = 4e-35
Identities = 30/122 (24%), Positives = 59/122 (48%)
Query: 214 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
++P + E ++F T +V + FA +IPGF DL + DQ L ++ + E+ ++R
Sbjct: 11 YVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRF 70
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALT 333
A A++ + F +G D LN++ EF + L+ +++ + A+
Sbjct: 71 ASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVV 130
Query: 334 LI 335
L+
Sbjct: 131 LV 132
Score = 65.5 bits (160), Expect = 7e-13
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 153 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
++P + E ++F T +V + FA +IPGF DL + DQ L ++ + E+
Sbjct: 11 YVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVL 66
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor
ligand-binding domain, anti-parallel alpha- sandwich,
ecdysone receptor, ECR, gene regulation; HET: FLC 20E
EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB:
1r1k_D* 3ixp_D* 1r20_D*
Length = 266
Score = 125 bits (317), Expect = 2e-34
Identities = 30/131 (22%), Positives = 60/131 (45%)
Query: 205 LELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSA 264
L+ + E +Q + +V +I FA +PGF+ + + DQ L ++
Sbjct: 50 LKRVTQTWQSDEDDEDSDMPFRQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKAC 109
Query: 265 SLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDIS 324
S E+ +LR+A R A ++F N + +++ + +L FC+ ++ M +D
Sbjct: 110 SSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYSMMMDNV 169
Query: 325 AFACLCALTLI 335
+A L A+ +
Sbjct: 170 HYALLTAIVIF 180
Score = 72.1 bits (177), Expect = 1e-14
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 15/104 (14%)
Query: 120 GRRGRLPSKPKSPQESPPSPPVSLITALYRE---------------PNPLEPPIAEPEKI 164
+ GR P K P + ++ + E
Sbjct: 11 QQMGRDPLKNVPPLTANQKSLIARLVWYQEGYEQPSEEDLKRVTQTWQSDEDDEDSDMPF 70
Query: 165 QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+Q + +V +I FA +PGF+ + + DQ L ++ S E+
Sbjct: 71 RQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVM 114
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET:
VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A*
3o1d_A* 3o1e_A*
Length = 302
Score = 125 bits (316), Expect = 7e-34
Identities = 40/246 (16%), Positives = 72/246 (29%), Gaps = 57/246 (23%)
Query: 92 RNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREP 151
+ F RF+ ++ G V R L S + +S P S+ T L
Sbjct: 26 DSYSDFVRFRPPVREGPVTRSAS------RAASLHSLSDASSDSFNHSPESVDTKLNFSN 79
Query: 152 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYRE 211
+ +
Sbjct: 80 LLMMYQDSGSP------------------------------------------------- 90
Query: 212 PNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVL 271
+ E + + L++ S+ + FA IPGF DL EDQ L +S+++E+ +L
Sbjct: 91 DSSEEDQQSRLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIML 150
Query: 272 RLAYRTRAEDTKLIFCNGVV--LEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACL 329
R ED + + L +++F L +++ L
Sbjct: 151 RSNQSFSLEDMSWSCGGPDFKYCINDVTKAGHTLELLEPLVKFQVGLKKLKLHEEEHVLL 210
Query: 330 CALTLI 335
A+ L+
Sbjct: 211 MAICLL 216
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear
receptor, signaling protein; HET: B72; 1.85A {Homo
sapiens} PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A*
3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A*
1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X*
2j4a_A* ...
Length = 267
Score = 123 bits (309), Expect = 3e-33
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 1/148 (0%)
Query: 188 FSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP 247
+ Q F + + + + E +F ++T ++ + FA K+P
Sbjct: 36 NAQGSHWKQRRKFLPDDI-GQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLP 94
Query: 248 GFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLN 307
FS+L EDQ +L + +E+ LR A R E L + ++++Q + +
Sbjct: 95 MFSELPXEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSD 154
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
AI E +SL +D + A L A+ L+
Sbjct: 155 AIFELGKSLSAFNLDDTEVALLQAVLLM 182
Score = 59.5 bits (144), Expect = 2e-10
Identities = 15/80 (18%), Positives = 32/80 (40%)
Query: 129 PKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGF 188
+ + + + + E +F ++T ++ + FA K+P F
Sbjct: 37 AQGSHWKQRRKFLPDDIGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMF 96
Query: 189 SDLCKEDQELLFQSASLELF 208
S+L EDQ +L + +E+
Sbjct: 97 SELPXEDQIILLKGCCMEIM 116
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet,
transcription regula; 2.60A {Homo sapiens}
Length = 245
Score = 122 bits (307), Expect = 3e-33
Identities = 36/185 (19%), Positives = 64/185 (34%), Gaps = 14/185 (7%)
Query: 152 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYRE 211
+ P E DVI A + + +
Sbjct: 6 HHHHGPEPTVE-------------DVISQVARAHREIFTYAHDKLGSSPGNFNANHASGS 52
Query: 212 PNP-LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFV 270
P P E + F T +V + FA IPGF DL + DQ L ++ + E+ +
Sbjct: 53 PYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLM 112
Query: 271 LRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLC 330
+R A +D ++F + Q+ D L+A+ +F + L+ + +
Sbjct: 113 VRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEEELGLFT 172
Query: 331 ALTLI 335
A+ L+
Sbjct: 173 AVVLV 177
Score = 64.1 bits (156), Expect = 5e-12
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 129 PKSPQESPPSPPVSLITALYREPNP-LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 187
+ + SP P P E + F T +V + FA IPG
Sbjct: 31 TYAHDKLGSSPGNFNANHASGSPYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPG 90
Query: 188 FSDLCKEDQELLFQSASLELF 208
F DL + DQ L ++ + E+
Sbjct: 91 FRDLSQHDQVTLLKAGTFEVL 111
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor
ligand binding domain, binding, metal-binding, nucleus,
phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB:
3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A*
4lbd_A*
Length = 266
Score = 121 bits (305), Expect = 1e-32
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 200 FQSASLELFYREPNPLEPPI-AEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 258
F + Y N E + + + +F L T + FA ++PGF+ L DQ
Sbjct: 44 FPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQI 103
Query: 259 LLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHL 318
L ++A L++ +LR+ R E + F +G+ L + Q + + + F L
Sbjct: 104 TLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLP 163
Query: 319 MEIDISAFACLCALTLI 335
+E+D + L A+ LI
Sbjct: 164 LEMDDAETGLLSAICLI 180
Score = 65.1 bits (159), Expect = 2e-12
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 19/102 (18%)
Query: 126 PSKPKSPQESPPSPPV--SLITALYR-----------------EPNPLEPPIAEPEKIQQ 166
P+ ES P LI + + + + + + +
Sbjct: 13 GLVPRGSHESYTLTPEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDK 72
Query: 167 FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
F L T + FA ++PGF+ L DQ L ++A L++
Sbjct: 73 FSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDIL 114
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling,
alternative DNA-binding, metal-binding, nucleus,
polymorphism, receptor transcription; HET: 965; 2.00A
{Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B*
1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A*
1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Length = 283
Score = 120 bits (303), Expect = 3e-32
Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 48/247 (19%)
Query: 90 RRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYR 149
+ +++ Q + L+ + SPP L
Sbjct: 2 KHQHQHQHQHQHQQ-------------PLQEEEQAHATSLPPRASSPPQILPQL------ 42
Query: 150 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY 209
+ L + FSD + +
Sbjct: 43 -----------SPEQLGMIEKLVAA-----QQQCNRRSFSDRLRVTP------------W 74
Query: 210 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 269
A ++ F L SV I FA ++PGF L +EDQ L +++++E+
Sbjct: 75 PMAPDPHSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVM 134
Query: 270 VLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFAC 328
+L + R + F ++ ++ +++N I EF ++++ ++++ + FA
Sbjct: 135 LLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFAL 194
Query: 329 LCALTLI 335
L A+++
Sbjct: 195 LIAISIF 201
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain,
transcription; HET: FEX; 1.80A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A*
3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A*
3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A*
3p88_A* ...
Length = 232
Score = 118 bits (299), Expect = 4e-32
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 8/152 (5%)
Query: 189 SDLCKEDQELLFQSASLELFYREPNP-----LEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
+L + Q LL R P L+ + E + T V V+ F
Sbjct: 3 GELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFT 62
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
K+PGF L EDQ L + +++E LR A + KL + +LE++ D
Sbjct: 63 KKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEI---FNKKLPSGHSDLLEERIRNSGISD 119
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+++ + F +S+ +++ +A L A+ ++
Sbjct: 120 EYITPMFSFYKSIGELKMTQEEYALLTAIVIL 151
Score = 60.4 bits (147), Expect = 7e-11
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 153 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
L+ + E + T V V+ F K+PGF L EDQ L + +++E
Sbjct: 33 ILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAM 88
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor,
transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A*
1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A*
2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Length = 244
Score = 117 bits (294), Expect = 3e-31
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 201 QSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL 260
A E Y P+P P ++ + + L + VI +A IPGFS L DQ L
Sbjct: 27 LVAEPEKIYAMPDPTVPD-SDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSL 85
Query: 261 FQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLME 320
QSA +E+ +L + YR+ + + +L++ + ++++ Q + + D NAIL+ + M+
Sbjct: 86 LQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMK 145
Query: 321 IDISAFACLCALTLI 335
++ F L A+ L
Sbjct: 146 LEKEEFVTLKAIALA 160
Score = 65.1 bits (159), Expect = 2e-12
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 126 PSKPKSPQESPP--SPPVSLITALYR-EPNPLEP------PIAEPEKIQQFYSLLTTSVD 176
+ +PQ P P +++ L EP + P ++ + + L +
Sbjct: 3 SPEFLNPQLVQPAKKPYNKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELV 62
Query: 177 VIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
VI +A IPGFS L DQ L QSA +E+
Sbjct: 63 VIIGWAKHIPGFSTLSLADQMSLLQSAWMEIL 94
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding
protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP:
a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Length = 246
Score = 114 bits (288), Expect = 2e-30
Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 2/142 (1%)
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 253
+Q + F+ + + +P P P + F + T V + F +P F L
Sbjct: 27 FEQFVQFRPPAHLFIHHQPLPTLAP--VLPLVTHFADINTFMVLQVIKFTKDLPVFRSLP 84
Query: 254 KEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFC 313
EDQ L + A++E+ + L + + + + F ++L + F
Sbjct: 85 IEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVGFQVEFLELLFHFH 144
Query: 314 QSLHLMEIDISAFACLCALTLI 335
+L +++ + L A+ L
Sbjct: 145 GTLRKLQLQEPEYVLLAAMALF 166
Score = 59.7 bits (145), Expect = 1e-10
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 129 PKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGF 188
Q PP L ++ +P P P + F + T V + F +P F
Sbjct: 25 TMFEQFVQFRPPAHLF--IHHQPLPTLAP--VLPLVTHFADINTFMVLQVIKFTKDLPVF 80
Query: 189 SDLCKEDQELLFQSASLELF 208
L EDQ L + A++E+
Sbjct: 81 RSLPIEDQISLLKGAAVEIC 100
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor,
ER-alpha, antagonist hormone-growth factor receptor
complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1
PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A*
3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A*
1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A*
...
Length = 248
Score = 114 bits (286), Expect = 4e-30
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Query: 201 QSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL 260
A + Y E +P P +E + +L + + ++A ++PGF DL DQ L
Sbjct: 14 LDAEPPILYSEYDP-TRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHL 72
Query: 261 FQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLM 319
+ A LE+ ++ L +R+ KL+F ++L++ Q + G + + +L +M
Sbjct: 73 LECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMM 132
Query: 320 EIDISAFACLCALTLI 335
+ F CL ++ L+
Sbjct: 133 NLQGEEFVCLKSIILL 148
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone
receptor-activator; HET: PTR EST; 1.50A {Homo sapiens}
PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A*
2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A*
1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A*
...
Length = 240
Score = 112 bits (282), Expect = 1e-29
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P E + L + + +A KIPGF +L DQ L +S +E+ ++ L +R+
Sbjct: 28 PFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRS 87
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
KLIF +VL++ + + G + + +L +++ + C+ A+ L
Sbjct: 88 IDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMIL 145
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha,
DNA-binding, isopeptide BON binding, nucleus,
phosphoprotein, transcription; HET: 5FB; 2.00A {Homo
sapiens} PDB: 1xb7_A 2pjl_A* 3d24_A
Length = 248
Score = 112 bits (282), Expect = 1e-29
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Query: 209 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 268
Y P+P P + L + V +A IPGFS L DQ + QS +E+
Sbjct: 35 YAMPDPAGPD-GHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEV 93
Query: 269 FVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFAC 328
VL +A R+ +L F +VL+++ + + + A+L+ + L + ++ +
Sbjct: 94 LVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVL 153
Query: 329 LCALTLI 335
L AL L
Sbjct: 154 LKALALA 160
Score = 61.7 bits (150), Expect = 3e-11
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 132 PQESPPSPPVSLITALYR-EPNPLEP------PIAEPEKIQQFYSLLTTSVDVIRHFADK 184
+ P +L++ L EP L P + L + V +A
Sbjct: 11 LEVLFQGPVNALVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKS 70
Query: 185 IPGFSDLCKEDQELLFQSASLELF 208
IPGFS L DQ + QS +E+
Sbjct: 71 IPGFSSLSLSDQMSVLQSVWMEVL 94
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 298
Score = 112 bits (282), Expect = 5e-29
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Query: 201 QSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL 260
A + Y E +P P +E + +L + + ++A ++PGF DL DQ L
Sbjct: 23 LDAEPPILYSEYDP-TRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHL 81
Query: 261 FQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLM 319
+ A LE+ ++ L +R+ KL+F ++L++ Q + G + + +L +M
Sbjct: 82 LECAWLEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMM 141
Query: 320 EIDISAFACLCALTLI 335
+ F CL ++ L+
Sbjct: 142 NLQGEEFVCLKSIILL 157
Score = 63.7 bits (155), Expect = 9e-12
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 26/145 (17%)
Query: 127 SKPKSPQESPPSPPVSLITALYR-EPNPLEP------PIAEPEKIQQFYSLLTTSVDVIR 179
SK S S + +++AL EP L P +E + +L + +
Sbjct: 4 SKKNSLALSLTAD--QMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMI 61
Query: 180 HFADKIPGFSDLCKEDQELLFQSASLELF-----YREPNPLEPPIAEPEKIQQFYSLLTT 234
++A ++PGF DL DQ L + A LE+ +R + P K+ L
Sbjct: 62 NWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWR-------SMEHPGKL-----LFAP 109
Query: 235 SVDVIRHFADKIPGFSDLCKEDQEL 259
++ + R+ + G ++
Sbjct: 110 NLLLDRNQGKCVEGMVEIFDMLLAT 134
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding
domain, transcription; HET: SRL; 2.00A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A*
3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Length = 316
Score = 112 bits (282), Expect = 5e-29
Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 1/147 (0%)
Query: 189 SDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 248
DLC L + ++ +P + + T I FA I
Sbjct: 86 KDLCSLKVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISY 145
Query: 249 FSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNA 308
F DL EDQ L + A+ EL LR A +T C + + F L
Sbjct: 146 FRDLPIEDQISLLKGAAFELCQLRFNTVFNA-ETGTWECGRLSYCLEDTAGGFQQLLLEP 204
Query: 309 ILEFCQSLHLMEIDISAFACLCALTLI 335
+L+F L +++ + + A++L
Sbjct: 205 MLKFHYMLKKLQLHEEEYVLMQAISLF 231
Score = 64.9 bits (158), Expect = 5e-12
Identities = 23/117 (19%), Positives = 34/117 (29%), Gaps = 8/117 (6%)
Query: 92 RNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREP 151
C + LQ +E + ++ L + E Y+ P
Sbjct: 58 GVLSSGCELPESLQAPSREEAAKWSQVRKDLCSLKVSLQLRGEDGSVW-------NYKPP 110
Query: 152 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + T I FA I F DL EDQ L + A+ EL
Sbjct: 111 ADSGGKEIF-SLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELC 166
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene
regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X*
1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A*
2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A*
3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Length = 254
Score = 110 bits (277), Expect = 8e-29
Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
Query: 211 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFV 270
+ +++ + L++ S+ + FA IPGF DL EDQ +L +S+++E+ +
Sbjct: 44 GGGSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIM 103
Query: 271 LRLAYRTRAEDTKLIFCNGVVLEKQQCQRS--FGDDWLNAILEFCQSLHLMEIDISAFAC 328
LR +D N + + + +++F L + +
Sbjct: 104 LRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVL 163
Query: 329 LCALTLI 335
L A+ ++
Sbjct: 164 LMAICIV 170
Score = 61.8 bits (150), Expect = 3e-11
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 126 PSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
P+ Q PP + +++ + L++ S+ + FA I
Sbjct: 27 PTYSDFCQFRPPVRVND-------GGGSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMI 79
Query: 186 PGFSDLCKEDQELLFQSASLELF 208
PGF DL EDQ +L +S+++E+
Sbjct: 80 PGFRDLTSEDQIVLLKSSAIEVI 102
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich,
transcription regulation, nuclear protein, DNA binding,
lipid binding protein; HET: CLR; 1.63A {Homo sapiens}
SCOP: a.123.1.1 PDB: 1s0x_A*
Length = 270
Score = 110 bits (276), Expect = 2e-28
Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 1/136 (0%)
Query: 200 FQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQEL 259
Q + + F +E Q +T ++ + FA +I GF +LC+ DQ +
Sbjct: 42 LQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIV 101
Query: 260 LFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLM 319
L ++ SLE+ +R+ +++ + F D+++ + EF +SL M
Sbjct: 102 LLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCE-DFISFVFEFGKSLCSM 160
Query: 320 EIDISAFACLCALTLI 335
+ A A L+
Sbjct: 161 HLTEDEIALFSAFVLM 176
Score = 58.7 bits (142), Expect = 3e-10
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 142 SLITALYREPNPLEPPIAEPEKI-QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLF 200
+ + + + E + Q +T ++ + FA +I GF +LC+ DQ +L
Sbjct: 44 QITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLL 103
Query: 201 QSASLELF 208
++ SLE+
Sbjct: 104 KAGSLEVV 111
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative
splicing, DNA-bindin binding, nucleus, receptor,
zinc-finger, acetylation, activator; HET: HC3; 1.74A
{Homo sapiens} PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Length = 248
Score = 109 bits (274), Expect = 2e-28
Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 200 FQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQEL 259
+F RE + E ++ LT ++ + FA ++ GF +LC+ DQ +
Sbjct: 33 LLRQRSNIFSREEVTGYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIV 92
Query: 260 LFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLM 319
L ++ ++E+ ++R+ R D + +F G + + + +++I +F SL +
Sbjct: 93 LLKAGAMEVVLVRMC-RAYNADNRTVFFEGKYGGMELFRALGCSELISSIFDFSHSLSAL 151
Query: 320 EIDISAFACLCALTLI 335
A AL LI
Sbjct: 152 HFSEDEIALYTALVLI 167
Score = 58.4 bits (141), Expect = 3e-10
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
RE + E ++ LT ++ + FA ++ GF +LC+ DQ +L ++ ++E+
Sbjct: 43 REEVTGYQRKSMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVV 102
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids,
retinoic acid, synthetic ligand, antagonist,
transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP:
a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Length = 244
Score = 109 bits (273), Expect = 2e-28
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 1/125 (0%)
Query: 211 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFV 270
E + QQ +T ++ + FA +I GF +LC+ DQ LL +S LE+ +
Sbjct: 38 EEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVL 97
Query: 271 LRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLC 330
+R+ + ++F + D +N +F ++L +++ A
Sbjct: 98 VRMCRAFNPLNNTVLFEGKYGGMQMFKALGSD-DLVNEAFDFAKNLCSLQLTEEEIALFS 156
Query: 331 ALTLI 335
+ LI
Sbjct: 157 SAVLI 161
Score = 58.7 bits (142), Expect = 3e-10
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 150 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
E + QQ +T ++ + FA +I GF +LC+ DQ LL +S LE+
Sbjct: 38 EEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVV 96
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex,
hormone/growth factor receptor complex; HET: VD4; 1.74A
{Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A*
1rkh_A* 1rkg_A* 2o4r_A*
Length = 292
Score = 110 bits (276), Expect = 2e-28
Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
Query: 211 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFV 270
+ ++ + L++ S+ + FA IPGF DL +DQ +L +S+++E+ +
Sbjct: 47 STGSVTLDLSPLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIM 106
Query: 271 LRLAYRTRAEDTKLIFCNGVVL--EKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFAC 328
LR +D + + + + +++F L + +
Sbjct: 107 LRSNQSFTMDDMSWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVL 166
Query: 329 LCALTLI 335
L A+ ++
Sbjct: 167 LMAICIV 173
Score = 61.8 bits (150), Expect = 5e-11
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 126 PSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
P+ PP ++ + +PL + L++ S+ + FA I
Sbjct: 30 PTYADFRDFRPPVRMDGSTGSVTLDLSPLSM-------LPHLADLVSYSIQKVIGFAKMI 82
Query: 186 PGFSDLCKEDQELLFQSASLELF 208
PGF DL +DQ +L +S+++E+
Sbjct: 83 PGFRDLTSDDQIVLLKSSAIEVI 105
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor,
adipogenesis, RXRA, nucleus, transcription; HET: DKA;
1.52A {Homo sapiens} PDB: 1i7i_A* 3ty0_A* 1zeo_A*
2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A*
2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A*
3g9e_A* 3gbk_A* 3ia6_A* ...
Length = 269
Score = 109 bits (274), Expect = 3e-28
Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 3/142 (2%)
Query: 196 QELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE 255
L+ ++ + P + Q +V I +A IPGF +L
Sbjct: 46 NSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLN 105
Query: 256 DQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG--DDWLNAILEFC 313
DQ L + E+ LA +D LI + ++ + D++ EF
Sbjct: 106 DQVTLLKYGVHEIIYTMLASLMN-KDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFA 164
Query: 314 QSLHLMEIDISAFACLCALTLI 335
+ +E+D S A A+ ++
Sbjct: 165 VKFNALELDDSDLAIFIAVIIL 186
Score = 65.2 bits (159), Expect = 3e-12
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 8/116 (6%)
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESP------PSPPVSLITALYREPNPL 154
+ L + +++ L + R K+ +SP S + ++ PL
Sbjct: 4 LRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPL 63
Query: 155 EPPIAEPEK--IQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ E Q +V I +A IPGF +L DQ L + E+
Sbjct: 64 QEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEII 119
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN
factor, transcription-receptor-agonist comple; HET: 470;
1.75A {Homo sapiens} PDB: 1yok_A* 1yuc_A* 4dor_A*
1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Length = 257
Score = 107 bits (268), Expect = 2e-27
Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 5/139 (3%)
Query: 202 SASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLF 261
A + + ++ + + ++ I +A F +L +DQ L
Sbjct: 35 QAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLL 94
Query: 262 QSASLELFVLRLAYR--TRAEDTKLIFCNGVVLEKQQCQRSFG---DDWLNAILEFCQSL 316
Q+ EL +L YR ++ + G ++ G ++ ++ E L
Sbjct: 95 QNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKL 154
Query: 317 HLMEIDISAFACLCALTLI 335
++ D F CL L L
Sbjct: 155 RSLQFDQREFVCLKFLVLF 173
Score = 63.3 bits (154), Expect = 9e-12
Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 28/167 (16%)
Query: 121 RRGRLPSKPKSPQESPPSPPVSLITA-------------LYREPNPLEPPIAEPEKIQQF 167
++G P+ S P + L+ ++ +
Sbjct: 2 KKGHHHHHHLVPRGSIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLM 61
Query: 168 YSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF-----YRE-PNPLEPPIAE 221
+ ++ I +A F +L +DQ L Q+ EL YR+ + E I
Sbjct: 62 CKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-- 119
Query: 222 PEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 268
+ + VD + ++L QEL+ + SL+
Sbjct: 120 -------FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQF 159
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone
receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1
PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A*
2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A*
3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A*
...
Length = 240
Score = 106 bits (267), Expect = 2e-27
Identities = 27/140 (19%), Positives = 56/140 (40%), Gaps = 1/140 (0%)
Query: 197 ELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 256
E Y E N P + + + + + +A +IP FS+L +D
Sbjct: 15 EAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDD 74
Query: 257 QELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAIL-EFCQS 315
Q +L ++ EL + ++R+ A ++ G+ + + + + +L E
Sbjct: 75 QVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSK 134
Query: 316 LHLMEIDISAFACLCALTLI 335
+ M++D + CL A+ L
Sbjct: 135 MRDMQMDKTELGCLRAIVLF 154
Score = 56.7 bits (137), Expect = 2e-09
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 135 SPPSPPVSLITAL---------YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
+ P ++ A Y E N P + + + + + +A +I
Sbjct: 5 NEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRI 64
Query: 186 PGFSDLCKEDQELLFQSASLELF 208
P FS+L +DQ +L ++ EL
Sbjct: 65 PHFSELPLDDQVILLRAGWNELL 87
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor,
transcription factor, agonist; HET: 196; 2.03A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Length = 268
Score = 107 bits (268), Expect = 2e-27
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P E + L + + +A KIPGF +L DQ L +S +E+ ++ L +R+
Sbjct: 26 PFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRS 85
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KLIF +VL++ + + G + + +L +++ + C+ A+ L+
Sbjct: 86 IDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILL 144
Score = 53.8 bits (129), Expect = 2e-08
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 136 PPSPPVSLITALYREPNPLEP----PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDL 191
P V + P+ L P E + L + + +A KIPGF +L
Sbjct: 2 SPEQLVLTLLE-AEPPHVLISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVEL 60
Query: 192 CKEDQELLFQSASLELF 208
DQ L +S +E+
Sbjct: 61 SLFDQVRLLESCWMEVL 77
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, non-steroidal
antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} PDB:
2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A*
1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A*
3ry9_A*
Length = 260
Score = 103 bits (259), Expect = 3e-26
Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 3/137 (2%)
Query: 201 QSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL 260
++ E+ Y + P + L + + +A +PGF +L EDQ L
Sbjct: 19 ENIEPEIVYAGYDS-SKPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITL 77
Query: 261 FQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHL 318
Q + + L L++R L F +V +++ +S + + +
Sbjct: 78 IQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFVR 137
Query: 319 MEIDISAFACLCALTLI 335
+++ + + L L+
Sbjct: 138 LQLTFEEYTIMKVLLLL 154
Score = 56.1 bits (135), Expect = 3e-09
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 128 KPKSPQESPPSPPVSLITA-----LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 182
+ + PV ++ +Y + P + L + + +A
Sbjct: 2 SLSTISRALTPSPVMVLENIEPEIVYAGYDS-SKPDTAENLLSTLNRLAGKQMIQVVKWA 60
Query: 183 DKIPGFSDLCKEDQELLFQSASLELF 208
+PGF +L EDQ L Q + + L
Sbjct: 61 KVLPGFKNLPLEDQITLIQYSWMSLL 86
>2p54_A PPAR-alpha, peroxisome proliferator-activated receptor alpha; PPAR
alpha GW735 SRC1 agonist HDLC, transcription; HET: 735;
1.79A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fei_A*
1i7g_A* 3kdu_A* 3kdt_A* 2rew_A* 1kkq_A* 3g8i_A* 3et1_A*
2znn_A* 3sp6_A* 1k7l_A* 2npa_A* 2xyj_A* 2xyw_A* 2xyx_A*
2q5g_A* 3gwx_A* 3dy6_A* 1gwx_A* 3peq_A* ...
Length = 267
Score = 103 bits (258), Expect = 5e-26
Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 8/141 (5%)
Query: 200 FQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIR---HFADKIPGFSDLCKED 256
A L + + +++ F+ TSV+ + FA IPGF++L D
Sbjct: 46 LCMAEKTLVAKLVAN--GIQNKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLND 103
Query: 257 QELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQ--QCQRSFGDDWLNAILEFCQ 314
Q L + E L+ + + + NG + + ++ F D + +F
Sbjct: 104 QVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFC-DIMEPKFDFAM 162
Query: 315 SLHLMEIDISAFACLCALTLI 335
+ +E+D S + A +
Sbjct: 163 KFNALELDDSDISLFVAAIIC 183
Score = 63.4 bits (154), Expect = 9e-12
Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 11/124 (8%)
Query: 88 DKRRRNRCQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITAL 147
D + + + + K M K R L G+ P E+ +L
Sbjct: 1 DLKSLAKRIYEAYLKNFN--MNKVKARVI-LSGKASNNPPFVIHDMETLCMAEKTL--VA 55
Query: 148 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIR---HFADKIPGFSDLCKEDQELLFQSAS 204
N ++ +++ F+ TSV+ + FA IPGF++L DQ L +
Sbjct: 56 KLVANGIQNK---EAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGV 112
Query: 205 LELF 208
E
Sbjct: 113 YEAI 116
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor,
antagonist transcription receptor; HET: ETC; 2.95A {Homo
sapiens} SCOP: a.123.1.1
Length = 271
Score = 102 bits (256), Expect = 1e-25
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P E + L + + +A KIPGF +L DQ L +S +E+ ++ L +R+
Sbjct: 54 PFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRS 113
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KLIF +VL++ + + G + + +L +++ + C+ A+ L+
Sbjct: 114 IDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILL 172
Score = 64.2 bits (156), Expect = 5e-12
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 7/102 (6%)
Query: 114 RTDSLKGRRGRLPSKPKSPQESPPS-PPVSLITALYR-EP-----NPLEPPIAEPEKIQQ 166
G +P + + P L+ L EP + P E +
Sbjct: 4 SHHHHHHSSGLVPRGSHMRELLLDALSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMS 63
Query: 167 FYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
L + + +A KIPGF +L DQ L +S +E+
Sbjct: 64 LTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVL 105
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor,
activating mutation, hypertension, antagonist,
spironolactone; HET: SNL; 2.11A {Homo sapiens}
Length = 294
Score = 103 bits (257), Expect = 1e-25
Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 3/137 (2%)
Query: 201 QSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL 260
++ E+ Y + P + L + + +A +PGF +L EDQ L
Sbjct: 53 ENIEPEIVYAGYDS-SKPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITL 111
Query: 261 FQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHL 318
Q + + L L++R L F +V +++ +S + + +
Sbjct: 112 IQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFVR 171
Query: 319 MEIDISAFACLCALTLI 335
+++ + + L L+
Sbjct: 172 LQLTFEEYTIMKVLLLL 188
Score = 58.4 bits (141), Expect = 5e-10
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 15/103 (14%)
Query: 121 RRGRLPSKPKSPQESPPSPPVSLITALYREPNPL----EPPI-----------AEPEKIQ 165
+G P+K S + ++ AL P + EP I +
Sbjct: 18 FQGSAPAKEPSVNTALVPQLSTISRALTPSPVMVLENIEPEIVYAGYDSSKPDTAENLLS 77
Query: 166 QFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
L + + +A +PGF +L EDQ L Q + + L
Sbjct: 78 TLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLL 120
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear
receptor, mouse GR, hormone receptor; HET: DEX; 1.50A
{Mus musculus} PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A*
3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A*
3gn8_A* 4e2j_A*
Length = 261
Score = 101 bits (253), Expect = 3e-25
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 2/128 (1%)
Query: 210 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 269
P + + L V +A IPGF +L +DQ L Q + + L
Sbjct: 29 YAGYDSSVPDSAWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLM 88
Query: 270 VLRLAYR--TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFA 327
V L +R +A L F +++ +Q+ D +L L +++ +
Sbjct: 89 VFALGWRSYRQASGNLLCFAPDLIINEQRMTLPCMYDQCKHMLFISTELQRLQVSYEEYL 148
Query: 328 CLCALTLI 335
C+ L L+
Sbjct: 149 CMKTLLLL 156
Score = 56.9 bits (137), Expect = 1e-09
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 135 SPPSPPVSLITALYR-EPNPL------EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 187
+ P +L++ L EP L P + + L V +A IPG
Sbjct: 8 ALPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSAWRIMTTLNMLGGRQVIAAVKWAKAIPG 67
Query: 188 FSDLCKEDQELLFQSASLELF 208
F +L +DQ L Q + + L
Sbjct: 68 FRNLHLDDQMTLLQYSWMFLM 88
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand
binding pocket, hormone/growth factor complex; HET: P1A;
2.75A {Tribolium castaneum}
Length = 235
Score = 97.9 bits (244), Expect = 3e-24
Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 1/134 (0%)
Query: 203 ASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ 262
A + +P + + + +A +P F+ L DQ L +
Sbjct: 17 AEKRVECNDPLVALVVNENNTTVNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLR 76
Query: 263 SASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAIL-EFCQSLHLMEI 321
+ EL + ++R+ ++ G+ + K + + +L E + M++
Sbjct: 77 AGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKM 136
Query: 322 DISAFACLCALTLI 335
D + CL A+ L
Sbjct: 137 DKTELGCLRAIILY 150
Score = 47.0 bits (112), Expect = 2e-06
Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 5/79 (6%)
Query: 135 SPPSPPVSLI-----TALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 189
P+ I +P + + + +A +P F+
Sbjct: 5 LQADMPLERIIEAEKRVECNDPLVALVVNENNTTVNNICQATHKQLFQLVQWAKLVPHFT 64
Query: 190 DLCKEDQELLFQSASLELF 208
L DQ L ++ EL
Sbjct: 65 SLPLTDQVQLLRAGWNELL 83
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 100 bits (249), Expect = 4e-24
Identities = 33/224 (14%), Positives = 67/224 (29%), Gaps = 25/224 (11%)
Query: 117 SLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVD 176
SL+G + ++ + P P S ++ + P I L
Sbjct: 65 SLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKC-- 122
Query: 177 VIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSV 236
+ + A + + ++ + + ++
Sbjct: 123 ------------------EPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTL 164
Query: 237 DVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLEK 294
I +A F +L +DQ L Q+ EL +L YR ++ + G ++
Sbjct: 165 FSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDY 224
Query: 295 QQCQRSFG---DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
G ++ ++ E L ++ D F CL L L
Sbjct: 225 SIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLF 268
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand
binding domain, orphan receptor, three-layered helical
sandwich, DNA-binding; 1.48A {Homo sapiens}
Length = 244
Score = 97.1 bits (242), Expect = 8e-24
Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 3/129 (2%)
Query: 209 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 268
R + P I+ L + +A IP F DL DQ L + EL
Sbjct: 24 SRFGSQCMQP-NNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSEL 82
Query: 269 FVLRLAYRT-RAEDTKLIFCNGVVLEKQQCQRSFGD-DWLNAILEFCQSLHLMEIDISAF 326
FVL A + L+ G+ R D + E + L + +D + +
Sbjct: 83 FVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEY 142
Query: 327 ACLCALTLI 335
+CL A+ L
Sbjct: 143 SCLKAIVLF 151
Score = 52.8 bits (127), Expect = 3e-08
Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Query: 131 SPQESPPSPPVSLITA-----LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
S S S +SL+ R + P I+ L + +A I
Sbjct: 2 SNSHSYLSGYISLLLRAEPYPTSRFGSQCMQP-NNIMGIENICELAARMLFSAVEWARNI 60
Query: 186 PGFSDLCKEDQELLFQSASLELF 208
P F DL DQ L + ELF
Sbjct: 61 PFFPDLQITDQVALLRLTWSELF 83
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor,
norethindrone, birth control, hormone/growth factor
receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A*
1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A*
1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Length = 261
Score = 95.7 bits (238), Expect = 3e-23
Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 3/137 (2%)
Query: 201 QSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL 260
S ++ Y + +P + L + + ++ +PGF +L +DQ L
Sbjct: 20 MSIEPDVIYAGHDNTKPD-TSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITL 78
Query: 261 FQSASLELFVLRLAYR--TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHL 318
Q + + L V L +R L F ++L +Q+ + S + + Q
Sbjct: 79 IQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVK 138
Query: 319 MEIDISAFACLCALTLI 335
+++ F C+ L L+
Sbjct: 139 LQVSQEEFLCMKVLLLL 155
Score = 54.9 bits (132), Expect = 6e-09
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 131 SPQESPPSPPVSLITALYR-EPNPLEP------PIAEPEKIQQFYSLLTTSVDVIRHFAD 183
SP + P LI L EP+ + P + L + + ++
Sbjct: 4 SPGQDIQLIP-PLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSK 62
Query: 184 KIPGFSDLCKEDQELLFQSASLELF 208
+PGF +L +DQ L Q + + L
Sbjct: 63 SLPGFRNLHIDDQITLIQYSWMSLM 87
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand,
phosphatidyl glycerol, CO-repressor peptide,
transcription; HET: DR9; 1.20A {Mus musculus} PDB:
3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Length = 246
Score = 94.5 bits (235), Expect = 6e-23
Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 5/144 (3%)
Query: 197 ELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 256
E + P + +P + + I +A + F +L D
Sbjct: 19 EPEEDQVRARIVGCLQEPAKSRSDQPAPFSLLCRMADQTFISIVDWARRCMVFKELEVAD 78
Query: 257 QELLFQSASLELFVLRLAYRTRAEDTK--LIFCNGVVLEKQQCQRSFG---DDWLNAILE 311
Q L Q++ EL VL YR + ++ G +E G + E
Sbjct: 79 QMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQAGSLLHSLVLRAQE 138
Query: 312 FCQSLHLMEIDISAFACLCALTLI 335
LH +++D F CL L L
Sbjct: 139 LVLQLHALQLDRQEFVCLKFLILF 162
Score = 55.6 bits (134), Expect = 3e-09
Identities = 13/72 (18%), Positives = 23/72 (31%)
Query: 137 PSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQ 196
P + P + +P + + I +A + F +L DQ
Sbjct: 20 PEEDQVRARIVGCLQEPAKSRSDQPAPFSLLCRMADQTFISIVDWARRCMVFKELEVADQ 79
Query: 197 ELLFQSASLELF 208
L Q++ EL
Sbjct: 80 MTLLQNSWSELL 91
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand
binding domain, AF-2, androgen, testosterone, DHT,
alpha-helical sandwich; HET: DHT; 1.40A {Pan
troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A*
1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A*
2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A*
2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Length = 269
Score = 94.6 bits (235), Expect = 1e-22
Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 3/132 (2%)
Query: 206 ELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 265
+ + +P + + L + + +A +PGF +L +DQ + Q +
Sbjct: 33 GVVCAGHDNNQPD-SFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSW 91
Query: 266 LELFVLRLAYRTRAEDTK--LIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDI 323
+ L V + +R+ L F +V + + +S + Q ++I
Sbjct: 92 MGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITP 151
Query: 324 SAFACLCALTLI 335
F C+ AL L
Sbjct: 152 QEFLCMKALLLF 163
Score = 51.8 bits (124), Expect = 8e-08
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 120 GRRGRLPSKPKSPQESPPSPPVSLITALYREPNPL------EPPIAEPEKIQQFYSLLTT 173
G G S E P+ L EP + P + + L
Sbjct: 1 GSPGISGGGGGSHIEGYECQPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGER 60
Query: 174 SVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + +A +PGF +L +DQ + Q + + L
Sbjct: 61 QLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLM 95
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding,
metal-binding, nucleus, transcription, transcription
regulation, zinc-finger; 2.60A {Crassostrea gigas}
Length = 243
Score = 91.7 bits (228), Expect = 7e-22
Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 2/136 (1%)
Query: 201 QSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL 260
A+L + N +PP + + L + + ++A +PG++DL DQ L
Sbjct: 15 NKAALPVLESHHNHGQPP-TKVHLLNSLVKLAERELVHLINWAKNVPGYTDLSLSDQVHL 73
Query: 261 FQSASLELFVLRLAYR-TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLM 319
+ +EL +L A+R L F +VL++ + + + +
Sbjct: 74 IECCWMELLLLNCAFRSIEHGGKSLAFAPDLVLDRSSWSTVEMTEIFEQVAAVSEQMMQN 133
Query: 320 EIDISAFACLCALTLI 335
+ L A+ L+
Sbjct: 134 HLHKDELLLLQAMVLV 149
Score = 48.2 bits (115), Expect = 9e-07
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 131 SPQESPPSPPVSLITA-----LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKI 185
S +S + + L N +PP + + L + + ++A +
Sbjct: 1 SNAKSQTVTILQALNKAALPVLESHHNHGQPP-TKVHLLNSLVKLAERELVHLINWAKNV 59
Query: 186 PGFSDLCKEDQELLFQSASLELF 208
PG++DL DQ L + +EL
Sbjct: 60 PGYTDLSLSDQVHLIECCWMELL 82
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding
domain, orphan nuclear receptor, testicular R 4,
signaling protein; 3.00A {Homo sapiens}
Length = 249
Score = 90.0 bits (223), Expect = 4e-21
Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 12/150 (8%)
Query: 194 EDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 253
E + L + P+P+ + + LL S+ H+A IP F L
Sbjct: 9 EVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSM----HWARSIPAFQALG 64
Query: 254 KEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD--------DW 305
++ L ++ ELF L LA + I V + Q +
Sbjct: 65 QDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEH 124
Query: 306 LNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ + EFC S+ ++ID +A L A+ L
Sbjct: 125 IWKLQEFCNSMAKLDIDGYEYAYLKAIVLF 154
Score = 49.2 bits (117), Expect = 5e-07
Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 15/150 (10%)
Query: 124 RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFAD 183
R S P E P + L + P+ E + + + + H+A
Sbjct: 1 RDQSTPIIEVEGPLLSDTHVTFKL-----TMPSPMPEYLNVHYICESASRLLFLSMHWAR 55
Query: 184 KIPGFSDLCKEDQELLFQSASLELF-----YREPNPLEPPIAEPEKIQQFYSLLTTSVDV 238
IP F L ++ L ++ ELF + + L S+
Sbjct: 56 SIPAFQALGQDCNTSLVRACWNELFTLGLAQC-AQVMSLSTILAAIVN----HLQNSIQE 110
Query: 239 IRHFADKIPGFSDLCKEDQELLFQSASLEL 268
+ D+I + + QE A L++
Sbjct: 111 DKLSGDRIKQVMEHIWKLQEFCNSMAKLDI 140
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein,
phosphorylation, PAIR-RULE protein; 2.8A {Drosophila
melanogaster} PDB: 2xhs_A
Length = 243
Score = 87.9 bits (218), Expect = 1e-20
Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 2/132 (1%)
Query: 206 ELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 265
+ E + + +L ++ +A F DL +DQ L Q +
Sbjct: 29 TQLFALLQKQTYNQVEVDLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSW 88
Query: 266 LELFVLRLAYR--TRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDI 323
++ VL + + NG V + E L ++ D+
Sbjct: 89 SDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLLGVPQLGDYFNELQNKLQDLKFDM 148
Query: 324 SAFACLCALTLI 335
+ C+ L L+
Sbjct: 149 GDYVCMKFLILL 160
Score = 46.3 bits (110), Expect = 4e-06
Identities = 12/64 (18%), Positives = 23/64 (35%)
Query: 145 TALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 204
T L+ E + + +L ++ +A F DL +DQ L Q +
Sbjct: 29 TQLFALLQKQTYNQVEVDLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSW 88
Query: 205 LELF 208
++
Sbjct: 89 SDML 92
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding
protein- transcription complex; HET: XCA; 1.25A
{Ancylostoma ceylanicum} PDB: 3up0_A*
Length = 243
Score = 88.0 bits (218), Expect = 2e-20
Identities = 16/147 (10%), Positives = 47/147 (31%), Gaps = 7/147 (4%)
Query: 196 QELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE 255
+ + + + + +++ ++ A ++P F+DL ++
Sbjct: 14 DLIQEAFKGMNDPMEQGRQATSFLKNEKSPADIMNIMDVTMRRFVKMAKRLPAFNDLSQD 73
Query: 256 DQELLFQSASLELFVLRLAYRTRAEDT-----KLIFCNGVVLEK-QQCQRSFGDDWLNAI 309
+ L + +E+ +R R + L + V + Q +
Sbjct: 74 GKFALLKGGMIEMLTVRGVRRFDSSSGSWTTPTLGESSEVSINMFDQLNADVRSEQKMRF 133
Query: 310 LEFCQSLH-LMEIDISAFACLCALTLI 335
L+F + H + + + + + L
Sbjct: 134 LQFFKIFHEDIRSNDLVISMIMLIVLF 160
Score = 53.3 bits (128), Expect = 2e-08
Identities = 7/61 (11%), Positives = 24/61 (39%)
Query: 148 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
+ + + +++ ++ A ++P F+DL ++ + L + +E+
Sbjct: 27 MEQGRQATSFLKNEKSPADIMNIMDVTMRRFVKMAKRLPAFNDLSQDGKFALLKGGMIEM 86
Query: 208 F 208
Sbjct: 87 L 87
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A
{Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A*
1lv2_A*
Length = 237
Score = 85.5 bits (212), Expect = 1e-19
Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
+ + I + + V+ +A IP F +L +DQ L ++ + E +L
Sbjct: 34 DIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATK 93
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
R+ L+ N ++ + + + + + E ++ID + +A L A+
Sbjct: 94 RSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIF 153
Query: 335 I 335
Sbjct: 154 F 154
Score = 44.3 bits (105), Expect = 2e-05
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 131 SPQESPPSPPVSLITALYREPNPLEPPIAEPEK---------IQQFYSLLTTSVDVIRHF 181
S E P ++ + + P++ I + + V+ +
Sbjct: 1 SSYELASLPSINALLQAEVLSRQITSPVSGINGDIRAKKIASIADVCESMKEQLLVLVEW 60
Query: 182 ADKIPGFSDLCKEDQELLFQSASLELF 208
A IP F +L +DQ L ++ + E
Sbjct: 61 AKYIPAFCELPLDDQVALLRAHAGEHL 87
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor,
ligand binding; HET: LPP; 2.4A {Drosophila melanogaster}
SCOP: a.123.1.1
Length = 279
Score = 78.5 bits (193), Expect = 8e-17
Identities = 23/169 (13%), Positives = 52/169 (30%), Gaps = 29/169 (17%)
Query: 195 DQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 254
E +L P P + ++ + + +A +P F+ +
Sbjct: 20 RAETQCGDRALTFLRVGPYSTVQP-DYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPL 78
Query: 255 EDQELLFQSASLELFVLRLAYR---------------------------TRAEDTKLIFC 287
+DQ +L ++A +EL + +A+ + +L
Sbjct: 79 DDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLN 138
Query: 288 NGVVLEKQQCQRSFGDDWLNAIL-EFCQSLHLMEIDISAFACLCALTLI 335
+ ++ + IL E + + +D +CL A+ L
Sbjct: 139 QSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILY 187
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors
superfamily; nuclear receptor, ligand binding domain,
dafachronic acid, nematode, DNA-binding, metal-binding,
nucleus, receptor; HET: DL4; 2.40A {Strongyloides
stercoralis} PDB: 3gyu_A*
Length = 244
Score = 76.2 bits (187), Expect = 3e-16
Identities = 13/146 (8%), Positives = 42/146 (28%), Gaps = 6/146 (4%)
Query: 196 QELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE 255
+ + + +++ ++ + A ++ F+++ +
Sbjct: 14 DSIRDSFQCMNEPLDNDQQASTLAKKEHNPTDILNVMDITMRRLVKMAKRLGAFNEISEA 73
Query: 256 DQELLFQSASLELFVLRLAYR----TRAEDTKLIFCNGVVLEK-QQCQRSFGDDWLNAIL 310
+ L + +E+ +R T + + + + + D L
Sbjct: 74 GKFSLLKGGMIEMLTIRGVTVFNADKGVWQTPVDGHSQISFNMFDKLRPDIKDTQKKGFL 133
Query: 311 EFCQSLH-LMEIDISAFACLCALTLI 335
F LH + + A + + L
Sbjct: 134 HFFNLLHSDVRKNDLAIDIIVLMVLF 159
Score = 50.0 bits (119), Expect = 2e-07
Identities = 12/129 (9%), Positives = 35/129 (27%), Gaps = 10/129 (7%)
Query: 142 SLITALYREPNPLEPP------IAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 195
S+ + PL+ + +++ ++ + A ++ F+++ +
Sbjct: 15 SIRDSFQCMNEPLDNDQQASTLAKKEHNPTDILNVMDITMRRLVKMAKRLGAFNEISEAG 74
Query: 196 QELLFQSASLELFY----REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 251
+ L + +E+ N + P S + GF
Sbjct: 75 KFSLLKGGMIEMLTIRGVTVFNADKGVWQTPVDGHSQISFNMFDKLRPDIKDTQKKGFLH 134
Query: 252 LCKEDQELL 260
+
Sbjct: 135 FFNLLHSDV 143
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich,
structural proteomics in europe, spine, structural
genomics, gene regulation; HET: EPH; 1.65A {Heliothis
virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A*
3ixp_A*
Length = 264
Score = 73.3 bits (180), Expect = 3e-15
Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 20/154 (12%)
Query: 201 QSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL 260
S + P+ PP + + + + +A IP FS L EDQ LL
Sbjct: 21 PSEEFQFLRVGPDSNVPP-KFRAPVSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQILL 79
Query: 261 FQSASLELFVLRLAYR------------------TRAEDTKLIFCNGVVLEKQQCQRSFG 302
+ + EL + +A+R T + + G+ L + ++
Sbjct: 80 IKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQAGV 139
Query: 303 DDWLNAIL-EFCQSLHLMEIDISAFACLCALTLI 335
+ +L E + + +D + + L A+ L+
Sbjct: 140 GQIFDRVLSELSLKMRTLRVDQAEYVALKAIILL 173
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional
corepressor, regulatory complex, DNA-binding,
lipid-binding, metal-binding; 3.00A {Mus musculus}
Length = 268
Score = 60.2 bits (145), Expect = 1e-10
Identities = 29/169 (17%), Positives = 44/169 (26%), Gaps = 35/169 (20%)
Query: 202 SASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVD---------VIRHFADKIPGFSDL 252
SA + P P +Q+ +L V F +P F L
Sbjct: 17 SADQTPATPQEQPRAPWWDASPGVQRLITLKDPQVVCEAASAGLLKTLRFVKYLPCFQIL 76
Query: 253 CKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD--------- 303
+ Q +L +S L +L LA + I E +R +
Sbjct: 77 PLDQQLVLVRSCWAPLLMLELAQDHLHFEMMEIPETNTTQEMLTTRRQETEGPEPAEPQA 136
Query: 304 -----------------DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ AI F + ID +A L L
Sbjct: 137 TEQPQMVSAEAGHLLPAAAVQAIKSFFFKCWSLNIDTKEYAYLKGTVLF 185
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 1e-08
Identities = 63/379 (16%), Positives = 102/379 (26%), Gaps = 139/379 (36%)
Query: 2 QLGRSSSSESPKLRHSAP----LSSASSSPGCDTSRPTPPS-P----SQLCAVCGDIAAC 52
+L R++ L + S++P D P S P QL
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV---VTA 253
Query: 53 QHYGVRTCEGCKGFFKR-----TVQKG---------SK----YVCLADKACPVDKRRRNR 94
+ G E +G + + KA
Sbjct: 254 KLLGFTPGE----LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI--------T 301
Query: 95 CQF---CRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREP 151
F R + + + DSL+ G PSP +S I+ L +E
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEG------------VPSPMLS-ISNLTQE- 347
Query: 152 NPLEPPIAE-----PEKIQQFYSLLTTSVDVIRHFADKIPGF-SDLCKEDQELLFQSASL 205
++ + + P Q SL+ + ++ + G L + L A
Sbjct: 348 -QVQDYVNKTNSHLPAGKQVEISLVNGA----KNLV--VSGPPQSLYGLNLTLRKAKAPS 400
Query: 206 EL------FY-REPNP----LEPPIAEPEKIQQFYS-LLTTSVDVIRHFADKIPGFSDLC 253
L F R+ L P+A P F+S LL + D+I DL
Sbjct: 401 GLDQSRIPFSERKLKFSNRFL--PVASP-----FHSHLLVPASDLI---------NKDL- 443
Query: 254 KEDQELLFQSASLELFVLRLAYRT------RAEDTKL-------IFCNGVVLEKQQCQRS 300
+ F + +++ V Y T R + I V
Sbjct: 444 -VKNNVSFNAKDIQIPV----YDTFDGSDLRVLSGSISERIVDCIIRLPV---------- 488
Query: 301 FGDDWLNA-------ILEF 312
W IL+F
Sbjct: 489 ---KWETTTQFKATHILDF 504
Score = 39.3 bits (91), Expect = 0.002
Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 25/115 (21%)
Query: 215 LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLA 274
LE + P S L F +P ++ D E + EL V +
Sbjct: 16 LEHVLLVPTASFFIASQLQEQ------FNKILPEPTEGFAADDE---PTTPAEL-VGKF- 64
Query: 275 YRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAIL-EFCQSLHLMEIDISAFAC 328
L + + +V + Q D LN L EF ++ +L DI A A
Sbjct: 65 ---------LGYVSSLVEPSKVGQF---DQVLNLCLTEF-ENCYLEGNDIHALAA 106
Score = 36.2 bits (83), Expect = 0.016
Identities = 25/176 (14%), Positives = 47/176 (26%), Gaps = 49/176 (27%)
Query: 131 SPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVD--VIRHFADKIPG- 187
++ LI + P + S L +V + A I G
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSN-----SALFRAVGEGNAQLVA--IFGG 162
Query: 188 -------FSDLCKEDQEL--LFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDV 238
F +L ++L + +L L I ++ + T +++
Sbjct: 163 QGNTDDYFEEL----RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF---TQGLNI 215
Query: 239 IR--HFADKIPGFSDLCKEDQELLFQSA--SLEL-FVLRLA-YRTRAEDTKLIFCN 288
+ P L S S L V++LA Y ++
Sbjct: 216 LEWLENPSNTPDKDYLL---------SIPISCPLIGVIQLAHY--------VVTAK 254
Score = 30.8 bits (69), Expect = 0.80
Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 37/131 (28%)
Query: 171 LTTSVDV--IRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQF 228
L + V F S L +E F L + P E + +F
Sbjct: 16 LEHVLLVPTASFFI-----ASQL-QEQ----FN-KILPEPTEGFAADDEPTTPAELVGKF 64
Query: 229 YSLLTTSVD-------------VIRHFADKIPGFSD-------LCKEDQELLFQSASLEL 268
+++ V+ + F + +D L +E+ L ++
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE--- 121
Query: 269 FVLRLAYRTRA 279
+++ R
Sbjct: 122 -LIKNYITARI 131
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 2e-07
Identities = 32/194 (16%), Positives = 63/194 (32%), Gaps = 57/194 (29%)
Query: 176 DVIRHFADKIPGFSDL-CKEDQELL---FQSASLELFYREPNPLEPP-------IAEPEK 224
D++ F D + CK+ Q++ ++ + + +++ E+
Sbjct: 20 DILSVFEDAF--VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 225 I-QQF--------YSLLTTSVDVIRHFADKIP-GFSDLCKEDQELLFQSASL--ELFVLR 272
+ Q+F Y L + + + P + + E ++ L+ + + V R
Sbjct: 78 MVQKFVEEVLRINYKFLMSPI----KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 273 ----LAYRT---RAEDTKLIFCNGV------VL-------EKQQCQRSFGDDWLN----- 307
L R K + +GV + K QC+ F WLN
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 308 ---AILEFCQSLHL 318
+LE Q L
Sbjct: 194 SPETVLEMLQKLLY 207
Score = 35.6 bits (81), Expect = 0.027
Identities = 29/263 (11%), Positives = 64/263 (24%), Gaps = 85/263 (32%)
Query: 76 KYVCLADKAC----PVDKRRRNRCQ-FCRFQKCLQ----------VGM--------VKEV 112
Y+ D+ K +R Q + + ++ L G+ +V
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 113 VRTDSLKGRRGRLPSKPKSPQESPPSPPVSLIT-ALYREPNPLEPPIAEPEKIQQFYSLL 171
+ ++ + + + P + E +Q+ +
Sbjct: 171 CLSYKVQCKMDF---------------KIFWLNLKNCNSPETV------LEMLQKLLYQI 209
Query: 172 TTSVDVIRHFADKIP-GFSDLCKEDQELLFQSA---SLELFYREPNPLEPPIAEPEKIQQ 227
+ + I + E + LL L L + +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLN-------VQNAKAWNA 261
Query: 228 F----YSLLTT---SVDVIRHFADKIPG--FSDLCKEDQELLF-QSASLELFVLRLAYRT 277
F LLTT V D + + + + + L + L
Sbjct: 262 FNLSCKILLTTRFKQV------TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DC 313
Query: 278 RAEDTKLIFCNGVVLEKQQCQRS 300
R +D L ++ +
Sbjct: 314 RPQD----------LPREVLTTN 326
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc
finger, DNA binding protein-D complex; 2.40A {Homo
sapiens} PDB: 3oda_A
Length = 116
Score = 29.9 bits (67), Expect = 0.48
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 178 IRHFADKIPGFSDLCKEDQELL 199
IRH ++ GFS+L +DQ+ +
Sbjct: 84 IRHPDVEVDGFSELRWDDQQKV 105
Score = 29.9 bits (67), Expect = 0.48
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 239 IRHFADKIPGFSDLCKEDQELL 260
IRH ++ GFS+L +DQ+ +
Sbjct: 84 IRHPDVEVDGFSELRWDDQQKV 105
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1,
ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose)
synthetase 1; NMR {Homo sapiens}
Length = 106
Score = 29.5 bits (66), Expect = 0.50
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 171 LTTSVDVIRHFADKIPGFSDLCKEDQELL 199
IRH ++ GFS+L +DQ+ +
Sbjct: 64 FWKVGHSIRHPDVEVDGFSELRWDDQQKV 92
Score = 29.5 bits (66), Expect = 0.50
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 232 LTTSVDVIRHFADKIPGFSDLCKEDQELL 260
IRH ++ GFS+L +DQ+ +
Sbjct: 64 FWKVGHSIRHPDVEVDGFSELRWDDQQKV 92
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 30.6 bits (68), Expect = 0.74
Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 110 KEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPE-KIQQFY 168
EV++ G+ G S + PP PP S L ++ P E K F+
Sbjct: 24 AEVLKACRNLGKNGLSNSSILLDKCPPPRPPSSPYPPLPKDKLNPPTPSIYLENKRDAFF 83
Query: 169 SLLTTSVDVIRHFADKIPGFSDLCKEDQEL 198
L + I G + K D L
Sbjct: 84 PPLHQFCTNPNNPVTVIRGLAGALKLDLGL 113
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc
finger, DNA binding protein-D complex; 2.80A {Homo
sapiens} PDB: 3ode_A 2l31_A
Length = 111
Score = 28.4 bits (63), Expect = 1.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 182 ADKIPGFSDLCKEDQELL 199
A ++ GFS L ED+E L
Sbjct: 75 ASQLKGFSLLATEDKEAL 92
Score = 28.4 bits (63), Expect = 1.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 243 ADKIPGFSDLCKEDQELL 260
A ++ GFS L ED+E L
Sbjct: 75 ASQLKGFSLLATEDKEAL 92
>2i0q_B Telomere-binding protein beta subunit; single strand DNA-protein
complex, structural protein/DNA complex; 1.91A
{Sterkiella nova} SCOP: b.40.4.3
Length = 385
Score = 29.6 bits (65), Expect = 1.5
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 5 RSSSSESPKLRHSAPLSSASSSPGCDTSRPTPPSPS 40
+ S ++P+ + +S+ G + P+ PSPS
Sbjct: 286 KGSRKDTPQKSQAPAAGKSSAKKGGKKAVPSAPSPS 321
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan
biosynthesis, glutamine amidotransferase, allosteric
interaction, lyase; 2.50A {Sulfolobus solfataricus}
SCOP: c.23.16.1
Length = 195
Score = 29.0 bits (66), Expect = 1.5
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 174 SVDVIRHFADKIP 186
S+DVI++ + P
Sbjct: 67 SLDVIKYLGKRTP 79
Score = 29.0 bits (66), Expect = 1.5
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 235 SVDVIRHFADKIP 247
S+DVI++ + P
Sbjct: 67 SLDVIKYLGKRTP 79
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1
PDB: 1i7q_B 1i7s_B*
Length = 192
Score = 29.0 bits (66), Expect = 1.8
Identities = 2/13 (15%), Positives = 6/13 (46%)
Query: 174 SVDVIRHFADKIP 186
+++ K+P
Sbjct: 66 MPELLTRLRGKLP 78
Score = 29.0 bits (66), Expect = 1.8
Identities = 2/13 (15%), Positives = 6/13 (46%)
Query: 235 SVDVIRHFADKIP 247
+++ K+P
Sbjct: 66 MPELLTRLRGKLP 78
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding
domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation;
3.10A {Homo sapiens} PDB: 2l30_A
Length = 223
Score = 29.0 bits (64), Expect = 2.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 182 ADKIPGFSDLCKEDQELL 199
A ++ GFS L ED+E L
Sbjct: 199 ASQLKGFSLLATEDKEAL 216
Score = 29.0 bits (64), Expect = 2.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 243 ADKIPGFSDLCKEDQELL 260
A ++ GFS L ED+E L
Sbjct: 199 ASQLKGFSLLATEDKEAL 216
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis,
apoptosis, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 134
Score = 27.8 bits (61), Expect = 2.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 182 ADKIPGFSDLCKEDQELL 199
A ++ GFS L ED+E L
Sbjct: 83 ASQLKGFSLLATEDKEAL 100
Score = 27.8 bits (61), Expect = 2.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 243 ADKIPGFSDLCKEDQELL 260
A ++ GFS L ED+E L
Sbjct: 83 ASQLKGFSLLATEDKEAL 100
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ
domain containing guanine nucleotide exchange factor 2,
PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Length = 134
Score = 27.7 bits (62), Expect = 2.6
Identities = 8/67 (11%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 175 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTT 234
++ + F ++P F+++ + L E+ + + + + +++ +Y +L
Sbjct: 11 IEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAII---LEDGQELDSWYVILNG 67
Query: 235 SVDVIRH 241
+V++
Sbjct: 68 TVEISHP 74
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell
division, DNA replication, nuclear protein; HET: DNA;
NMR {Homo sapiens} SCOP: g.39.1.12
Length = 117
Score = 27.3 bits (60), Expect = 3.6
Identities = 3/18 (16%), Positives = 10/18 (55%)
Query: 182 ADKIPGFSDLCKEDQELL 199
++ G+ +L ++E +
Sbjct: 73 LTELEGWEELEDNEKEQI 90
Score = 27.3 bits (60), Expect = 3.6
Identities = 3/18 (16%), Positives = 10/18 (55%)
Query: 243 ADKIPGFSDLCKEDQELL 260
++ G+ +L ++E +
Sbjct: 73 LTELEGWEELEDNEKEQI 90
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2)
tetramer, riken structural genomics/proteomi initiative,
RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP:
c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Length = 474
Score = 28.3 bits (64), Expect = 3.6
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 22/66 (33%)
Query: 117 SLKGRRG-RLPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSV 175
S KGRRG +L ++ P RE P P + E
Sbjct: 10 SRKGRRGLKLVKAVPKAEDLIPK-------EHLREVPPRLPEVDELT------------- 49
Query: 176 DVIRHF 181
++RH+
Sbjct: 50 -LVRHY 54
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell
death, structural genomics; NMR {Arabidopsis thaliana}
Length = 114
Score = 27.2 bits (60), Expect = 3.8
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 2/43 (4%)
Query: 182 ADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEK 224
D + G L EDQ+ + +E +
Sbjct: 69 VDDVEGIESLRWEDQQKI--RKYVESGAGSNTSTSTGTSTSSS 109
Score = 26.9 bits (59), Expect = 5.4
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 243 ADKIPGFSDLCKEDQELL 260
D + G L EDQ+ +
Sbjct: 69 VDDVEGIESLRWEDQQKI 86
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 27.1 bits (60), Expect = 4.1
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 134 ESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDV 177
S S + T E P P + F + + +VD+
Sbjct: 2 SSGSSGWILASTT---E----GAPSVAPLNVTVFLNESSDNVDI 38
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 26.2 bits (58), Expect = 4.2
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 122 RGRLPSKPKSPQESPPSPPVSLITALY----REPNPL 154
+ LP P+ + S P +L+ ALY +P L
Sbjct: 1 KKPLPPTPEDNRRSFQEPEETLVIALYDYQTNDPQEL 37
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease,
double strand DNA repair, protein-DNA CO hydrolase-DNA
complex; HET: DNA; 2.80A {Bacillus subtilis} PDB:
3u44_A*
Length = 1232
Score = 28.4 bits (63), Expect = 4.3
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 7/118 (5%)
Query: 175 VDVIRHFADKI---PGFSDLCKEDQELLFQSASLELF---YREPNPLEPPIAEPEKIQQF 228
+ V++ + I PGF + + EL+ ELF Y + + + +
Sbjct: 114 LQVLKKYYYLIDLDPGFRIADQTEGELIGDEVLDELFEDEYAKGEKAFFELVDRYTTDRH 173
Query: 229 YSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIF 286
L V + ++ P + L+ + Y+ ED ++
Sbjct: 174 DLDLQFLVKQVYEYSRSHPNPEAWLESFVH-LYDVSEKSAIEELPFYQYVKEDIAMVL 230
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 27.8 bits (61), Expect = 6.5
Identities = 8/36 (22%), Positives = 11/36 (30%)
Query: 126 PSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEP 161
S P S+ +A L PP+ P
Sbjct: 11 SSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVP 46
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 6.8
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 13/35 (37%)
Query: 293 EKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFA 327
EKQ ++ L+ SL L D SA A
Sbjct: 18 EKQALKK----------LQ--ASLKLYADD-SAPA 39
Score = 26.8 bits (58), Expect = 7.7
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 7/29 (24%)
Query: 194 EDQEL--LFQSASLELFYREPNPLEPPIA 220
E Q L L ASL+L+ + P +A
Sbjct: 18 EKQALKKL--QASLKLYA--DDS-APALA 41
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics,
ring-finger, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
g.44.1.1
Length = 93
Score = 25.8 bits (56), Expect = 7.6
Identities = 13/48 (27%), Positives = 15/48 (31%), Gaps = 10/48 (20%)
Query: 26 SPGCDTSRPTPPSPSQLCAVCGD----------IAACQHYGVRTCEGC 63
S G +P Q C +CGD AC G C C
Sbjct: 2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPC 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.416
Gapped
Lambda K H
0.267 0.0475 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,887,342
Number of extensions: 286002
Number of successful extensions: 1038
Number of sequences better than 10.0: 1
Number of HSP's gapped: 967
Number of HSP's successfully gapped: 172
Length of query: 335
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 241
Effective length of database: 4,077,219
Effective search space: 982609779
Effective search space used: 982609779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.4 bits)