RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2636
(335 letters)
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 115 bits (289), Expect = 5e-33
Identities = 79/87 (90%), Positives = 83/87 (95%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
CAVCGD A+CQHYGVRTCEGCKGFFKRTVQK +KY+CLA+K CPVDKRRRNRCQFCRFQK
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 62
Query: 103 CLQVGMVKEVVRTDSLKGRRGRLPSKP 129
CL VGMVKEVVRTDSLKGRRGRLPSKP
Sbjct: 63 CLAVGMVKEVVRTDSLKGRRGRLPSKP 89
>d1pdua_ a.123.1.1 (A:) Nuclear hormone receptor HR38 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 230
Score = 118 bits (297), Expect = 2e-32
Identities = 88/120 (73%), Positives = 102/120 (85%), Gaps = 1/120 (0%)
Query: 216 EPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAY 275
E ++E +K+QQFY LLT+SVDVI+ FA+KIPG+ DL EDQELLFQSASLELFVLRLAY
Sbjct: 29 EQSMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAY 88
Query: 276 RTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
R R +DTKLIFCNG VL + QC RSFG +WLN I+EF +SLH +EIDISAFACLCALTLI
Sbjct: 89 RARIDDTKLIFCNGTVLHRTQCLRSFG-EWLNDIMEFSRSLHNLEIDISAFACLCALTLI 147
Score = 70.0 bits (171), Expect = 1e-14
Identities = 55/205 (26%), Positives = 83/205 (40%), Gaps = 26/205 (12%)
Query: 141 VSLITALYR-----EPNP--------LEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPG 187
+SLITAL R P+P E ++E +K+QQFY LLT+SVDVI+ FA+KIPG
Sbjct: 2 ISLITALVRSHVDTTPDPSCLDYSHYEEQSMSEADKVQQFYQLLTSSVDVIKQFAEKIPG 61
Query: 188 FSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP 247
+ DL EDQELLFQSASLELF + K+ + +R F + +
Sbjct: 62 YFDLLPEDQELLFQSASLELFVLRLAYRARI--DDTKLIFCNGTVLHRTQCLRSFGEWLN 119
Query: 248 GFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLN 307
+ + L + L + L + + +
Sbjct: 120 DIMEFSRSLHNLEIDIS--AFACLCAL---------TLITERHGLREPKKVEQLQMKIIG 168
Query: 308 AILEFCQSLHLMEIDISAFACLCAL 332
++ + + F+ L
Sbjct: 169 SLRDHVTYNAEAQKKQHYFSRLLGK 193
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 116 bits (291), Expect = 2e-31
Identities = 68/127 (53%), Positives = 94/127 (74%), Gaps = 1/127 (0%)
Query: 209 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 268
++ + + + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LEL
Sbjct: 25 FQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLEL 84
Query: 269 FVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFAC 328
FVLRLAYR+ + KLIFCNGVVL + QC R FG +W+++I+EF +L M IDISAF+C
Sbjct: 85 FVLRLAYRSNPVEGKLIFCNGVVLHRLQCVRGFG-EWIDSIVEFSSNLQNMNIDISAFSC 143
Query: 329 LCALTLI 335
+ AL ++
Sbjct: 144 IAALAMV 150
Score = 70.0 bits (171), Expect = 1e-14
Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 29/193 (15%)
Query: 148 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
++ + + + IQQFY LLT S+++IR +A+KIPGF+DL K DQ+LLF+SA LEL
Sbjct: 25 FQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLEL 84
Query: 208 ----FYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQS 263
NP+E L V+ H + GF + E
Sbjct: 85 FVLRLAYRSNPVEGK-------------LIFCNGVVLHRLQCVRGFGEWIDSIVEFSSNL 131
Query: 264 ASLEL----FVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLM 319
++ + F A + L++ + + +N + + +
Sbjct: 132 QNMNIDISAFSCIAAL--------AMVTERHGLKEPKRVEELQNKIVNCLKDHVTFNNGG 183
Query: 320 EIDISAFACLCAL 332
+ + L
Sbjct: 184 LNRPNYLSKLLGK 196
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 109 bits (274), Expect = 9e-31
Identities = 34/88 (38%), Positives = 54/88 (61%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
++C VCGD A H+ TCEGCKGFF+R++++ + + C + C + K R CQ CR
Sbjct: 1 RICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRL 60
Query: 101 QKCLQVGMVKEVVRTDSLKGRRGRLPSK 128
++C+ +GM+KE + TD R+ + K
Sbjct: 61 KRCVDIGMMKEFILTDEEVQRKREMILK 88
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 107 bits (268), Expect = 6e-30
Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
+CA+CGD ++ +HYGV +CEGCKGFFKRTV+K Y C +K C +DKR+RNRCQ+C
Sbjct: 4 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYC 63
Query: 99 RFQKCLQVGMVKEVVRTD 116
R+QKCL +GM +E V+ +
Sbjct: 64 RYQKCLAMGMKREAVQEE 81
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 111 bits (279), Expect = 9e-30
Identities = 63/124 (50%), Positives = 90/124 (72%), Gaps = 1/124 (0%)
Query: 209 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 268
++E + +QQFY LL+ S++VIR +A+KIPGF++L DQ+LL +SA LEL
Sbjct: 25 FQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLEL 84
Query: 269 FVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFAC 328
F+LRLAYR++ + KLIFC+G+VL + QC R FG DW+++IL F +SLH + +D+ AFAC
Sbjct: 85 FILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFG-DWIDSILAFSRSLHSLLVDVPAFAC 143
Query: 329 LCAL 332
L AL
Sbjct: 144 LSAL 147
Score = 66.6 bits (162), Expect = 2e-13
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 148 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
++E + +QQFY LL+ S++VIR +A+KIPGF++L DQ+LL +SA LEL
Sbjct: 25 FQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLEL 84
Query: 208 F 208
F
Sbjct: 85 F 85
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 106 bits (265), Expect = 2e-29
Identities = 48/84 (57%), Positives = 58/84 (69%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P +LC VCGDIA+ HYGV +CE CK FFKRT+Q +Y C A C + KRRR CQ C
Sbjct: 3 PKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQAC 62
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRR 122
RF K L+VGM+KE VR D ++G R
Sbjct: 63 RFMKALKVGMLKEGVRLDRVRGGR 86
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 103 bits (257), Expect = 3e-28
Identities = 39/82 (47%), Positives = 51/82 (62%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRF 100
+LC VCGD A+ HY TCEGCKGFF+R+V K + Y C +AC +D R +CQ CR
Sbjct: 1 ELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRL 60
Query: 101 QKCLQVGMVKEVVRTDSLKGRR 122
+KCL VGM E V ++ +
Sbjct: 61 KKCLAVGMRPECVVPENQCAMK 82
>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 103 bits (258), Expect = 9e-27
Identities = 35/145 (24%), Positives = 61/145 (42%)
Query: 191 LCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFS 250
+ K QE L + + + +F L T + I FA ++PGF+
Sbjct: 12 VSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFT 71
Query: 251 DLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAIL 310
L DQ L ++A L++ +LR+ R E + F +G+ L + Q + + +
Sbjct: 72 GLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVF 131
Query: 311 EFCQSLHLMEIDISAFACLCALTLI 335
F L +E+D + L A+ LI
Sbjct: 132 AFAGQLLPLEMDDTETGLLSAICLI 156
Score = 52.3 bits (125), Expect = 2e-08
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
+ + +F L T + I FA ++PGF+ L DQ L ++A L++
Sbjct: 31 TNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDIL 90
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 97.8 bits (243), Expect = 2e-26
Identities = 43/74 (58%), Positives = 52/74 (70%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D ++ HYGV CEGCKGFF+R++QK Y C DK C ++K RNRCQ+CR QK
Sbjct: 2 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 61
Query: 103 CLQVGMVKEVVRTD 116
C +VGM KE VR D
Sbjct: 62 CFEVGMSKESVRND 75
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 97.4 bits (242), Expect = 4e-26
Identities = 41/76 (53%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 42 LCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKY-VCLADKACPVDKRRRNRCQFCRF 100
LC VCGD+A+ HYGV CEGCKGFF+R++Q+ +Y CL ++ C + + RNRCQ CRF
Sbjct: 2 LCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRF 61
Query: 101 QKCLQVGMVKEVVRTD 116
+KCL VGM ++ VR
Sbjct: 62 KKCLSVGMSRDAVRFG 77
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 96.3 bits (239), Expect = 7e-26
Identities = 32/73 (43%), Positives = 41/73 (56%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
P + C +CGD A+ HYG TC CK FFKR + KY+C + C +DK RR C C
Sbjct: 1 PQKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSC 60
Query: 99 RFQKCLQVGMVKE 111
R +KC + GM
Sbjct: 61 RLRKCYEAGMTLG 73
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human
and chicken (Homo sapiens) and (Gallus gallus) [TaxId:
9606]}
Length = 74
Score = 95.6 bits (237), Expect = 1e-25
Identities = 38/72 (52%), Positives = 50/72 (69%)
Query: 39 PSQLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFC 98
++ CAVC D A+ HYGV +CEGCK FFKR++Q + Y+C A C +DK RR CQ C
Sbjct: 3 ETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQAC 62
Query: 99 RFQKCLQVGMVK 110
R +KC +VGM+K
Sbjct: 63 RLRKCYEVGMMK 74
>d1lata_ g.39.1.2 (A:) Glucocorticoid receptor DNA-binding domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 92.4 bits (229), Expect = 2e-24
Identities = 37/69 (53%), Positives = 44/69 (63%)
Query: 43 CAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 102
C VC D A+ HYGV TCEGCK FFKR V+ Y+C + C +DK RR C CR++K
Sbjct: 3 CLVCSDEASGCHYGVLTCEGCKAFFKRAVEGQHNYLCKYEGKCIIDKIRRKNCPACRYRK 62
Query: 103 CLQVGMVKE 111
CLQ GM E
Sbjct: 63 CLQAGMNLE 71
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 97.4 bits (242), Expect = 3e-24
Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 1/148 (0%)
Query: 188 FSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIP 247
+ Q+ F + N E + E F ++T ++ + FA K+P
Sbjct: 23 NAQGSHWKQKRKFLPEDIG-QAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLP 81
Query: 248 GFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLN 307
F +L EDQ +L + +E+ LR A R E L + + + Q + +
Sbjct: 82 MFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSD 141
Query: 308 AILEFCQSLHLMEIDISAFACLCALTLI 335
AI + SL +D + A L A+ L+
Sbjct: 142 AIFDLGMSLSSFNLDDTEVALLQAVLLM 169
Score = 52.7 bits (126), Expect = 1e-08
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 133 QESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 192
Q+ P + P E + E F ++T ++ + FA K+P F +L
Sbjct: 31 QKRKFLPEDIGQAPIVNAP---EGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELP 87
Query: 193 KEDQELLFQSASLELF 208
EDQ +L + +E+
Sbjct: 88 CEDQIILLKGCCMEIM 103
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth
(Heliothis virescens) [TaxId: 7102]}
Length = 243
Score = 96.6 bits (240), Expect = 4e-24
Identities = 32/157 (20%), Positives = 68/157 (43%), Gaps = 12/157 (7%)
Query: 191 LCKEDQELL---------FQSASLELF--YREPNPLEPPIAEPE-KIQQFYSLLTTSVDV 238
L + L+ ++ S E + + + + +Q + +V +
Sbjct: 4 LTANQKSLIARLVWYQEGYEQPSEEDLKRVTQTWQSDEDDEDSDMPFRQITEMTILTVQL 63
Query: 239 IRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQ 298
I FA +PGF+ + + DQ L ++ S E+ +LR+A R A ++F N + +
Sbjct: 64 IVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYR 123
Query: 299 RSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
++ + +L FC+ ++ M +D +A L A+ +
Sbjct: 124 KAGMAYVIEDLLHFCRCMYSMMMDNVHYALLTAIVIF 160
Score = 49.2 bits (117), Expect = 1e-07
Identities = 17/77 (22%), Positives = 31/77 (40%)
Query: 133 QESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLC 192
QE P + + + E +Q + +V +I FA +PGF+ +
Sbjct: 19 QEGYEQPSEEDLKRVTQTWQSDEDDEDSDMPFRQITEMTILTVQLIVEFAKGLPGFAKIS 78
Query: 193 KEDQELLFQSASLELFY 209
+ DQ L ++ S E+
Sbjct: 79 QSDQITLLKACSSEVMM 95
>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 239
Score = 92.4 bits (229), Expect = 1e-22
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 209 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 268
+ + A ++ F L SV I FA ++PGF L +EDQ L +++++E+
Sbjct: 33 WPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEI 92
Query: 269 FVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFA 327
+L A R E + F K R+ +++N I EF +++ + +D + +A
Sbjct: 93 MLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYA 152
Query: 328 CLCALTLI 335
L A+ +
Sbjct: 153 LLIAINIF 160
Score = 50.0 bits (119), Expect = 9e-08
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 136 PPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 195
S + + A ++ F L SV I FA ++PGF L +ED
Sbjct: 21 KRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGRED 80
Query: 196 QELLFQSASLELF 208
Q L +++++E+
Sbjct: 81 QIALLKASTIEIM 93
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 88.3 bits (218), Expect = 2e-22
Identities = 42/98 (42%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 41 QLCAVCGDIAACQHYGVRTCEGCKGFFKRTVQKGSKYV--CLADKACPVDKRRRNRCQFC 98
+LC VCGD A HY TCEGCKGFF+RT+QK C + C +DK RN+CQ C
Sbjct: 2 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQEC 61
Query: 99 RFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESP 136
RF+KC+ VGM ++V DS + + +L + + +
Sbjct: 62 RFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRRE 99
>d1osha_ a.123.1.1 (A:) Bile acid receptor FXR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 231
Score = 91.2 bits (226), Expect = 3e-22
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 8/152 (5%)
Query: 189 SDLCKEDQELLFQSASLELFYREPN-----PLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
+L + Q LL R P L+ + E + T V V+ F
Sbjct: 3 GELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFT 62
Query: 244 DKIPGFSDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGD 303
K+PGF L EDQ L + +++E LR A + KL + +LE++ D
Sbjct: 63 KKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIF---NKKLPSGHSDLLEERIRNSGISD 119
Query: 304 DWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+++ + F +S+ +++ +A L A+ ++
Sbjct: 120 EYITPMFSFYKSIGELKMTQEEYALLTAIVIL 151
Score = 55.0 bits (132), Expect = 2e-09
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 11/116 (9%)
Query: 153 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREP 212
L+ + E + T V V+ F K+PGF L EDQ L + +++E +
Sbjct: 33 ILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRS 92
Query: 213 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 268
+ L + D++ + L++
Sbjct: 93 AEIFNKK-----------LPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKM 137
>d1xnxa_ a.123.1.1 (A:) Orphan nuclear receptor NR1I3 (CAR) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 232
Score = 89.3 bits (221), Expect = 2e-21
Identities = 25/122 (20%), Positives = 45/122 (36%)
Query: 214 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
P +P + F + T V I F +P F L EDQ L + A++E+ + L
Sbjct: 44 PFQPRGPVLPLLTHFADINTFMVQQIIKFTKDLPLFRSLTMEDQISLLKGAAVEILHISL 103
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALT 333
+ + F ++L +IL F ++L + + + + A
Sbjct: 104 NTTFCLQTENFFCGPLCYKMEDAVHAGFQYEFLESILHFHKNLKGLHLQEPEYVLMAATA 163
Query: 334 LI 335
L
Sbjct: 164 LF 165
Score = 50.4 bits (120), Expect = 6e-08
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 153 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P +P + F + T V I F +P F L EDQ L + A++E+
Sbjct: 44 PFQPRGPVLPLLTHFADINTFMVQQIIKFTKDLPLFRSLTMEDQISLLKGAAVEIL 99
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 89.6 bits (222), Expect = 2e-21
Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 5/140 (3%)
Query: 200 FQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFSDLCKED 256
A L +++ PP E + FY T+V+ +R FA IP FS L D
Sbjct: 45 LWQAEKGLVWKQLVNGLPPYKEIS-VHVFYRCQCTTVETVRELTEFAKSIPSFSSLFLND 103
Query: 257 QELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVL-EKQQCQRSFGDDWLNAILEFCQS 315
Q L + E LA + + +G V E + R D + EF
Sbjct: 104 QVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFLRSLRKPFSDIIEPKFEFAVK 163
Query: 316 LHLMEIDISAFACLCALTLI 335
+ +E+D S A A ++
Sbjct: 164 FNALELDDSDLALFIAAIIL 183
Score = 50.0 bits (119), Expect = 1e-07
Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 11/130 (8%)
Query: 145 TALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFSDLCKEDQELLFQ 201
++++ PP E + FY T+V+ +R FA IP FS L DQ L +
Sbjct: 51 GLVWKQLVNGLPPYKEIS-VHVFYRCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLK 109
Query: 202 SASLELF-------YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 254
E + L + + SL D+I + F+ L
Sbjct: 110 YGVHEAIFAMLASIVNKDGLLVANGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALEL 169
Query: 255 EDQELLFQSA 264
+D +L A
Sbjct: 170 DDSDLALFIA 179
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 88.6 bits (219), Expect = 3e-21
Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 200 FQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQEL 259
Q + + F +E Q +T ++ + FA +I GF +LC+ DQ +
Sbjct: 35 LQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIV 94
Query: 260 LFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLM 319
L ++ SLE+ +R+ +++ ++ +G + +D+++ + EF +SL M
Sbjct: 95 LLKAGSLEVVFIRMCRAFDSQN-NTVYFDGKYASPDVFKSLGCEDFISFVFEFGKSLCSM 153
Query: 320 EIDISAFACLCALTLI 335
+ A A L+
Sbjct: 154 HLTEDEIALFSAFVLM 169
Score = 50.5 bits (120), Expect = 7e-08
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 142 SLITALYREPNPLEPPIAEPEKI-QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLF 200
+ + + + E + Q +T ++ + FA +I GF +LC+ DQ +L
Sbjct: 37 QITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLL 96
Query: 201 QSASLELF 208
++ SLE+
Sbjct: 97 KAGSLEVV 104
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 87.5 bits (216), Expect = 2e-20
Identities = 39/188 (20%), Positives = 62/188 (32%), Gaps = 10/188 (5%)
Query: 148 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 207
+R P L PE +Q +R DLC L + +
Sbjct: 31 FRLPGVLSSGCELPESLQAPSREEAAKWSQVRK---------DLCSLKVSLQLRGEDGSV 81
Query: 208 FYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 267
+ +P + + T I FA I F DL EDQ L + A+ E
Sbjct: 82 WNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFE 141
Query: 268 LFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFA 327
L LR A +T C + + F L +L+F L +++ +
Sbjct: 142 LCQLRFNTVFNA-ETGTWECGRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYV 200
Query: 328 CLCALTLI 335
+ A++L
Sbjct: 201 LMQAISLF 208
Score = 50.5 bits (120), Expect = 9e-08
Identities = 27/120 (22%), Positives = 38/120 (31%), Gaps = 8/120 (6%)
Query: 95 CQFCRFQKCLQVGMVKEVVRTDSLKGRRGRLPSKPKSPQESPPSPPVSLITALYREPNPL 154
F F+ + E +SL+ +K ++ S VSL
Sbjct: 26 SHFKNFRLPGVLSSGCE--LPESLQAPSREEAAKWSQVRKDLCSLKVSLQLRGEDGSVWN 83
Query: 155 EPPIAEPEKI------QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELF 208
P A+ + T I FA I F DL EDQ L + A+ EL
Sbjct: 84 YKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELC 143
>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 85.9 bits (212), Expect = 3e-20
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 206 ELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 265
E Y P+P P + L + V +A IPGFS L DQ + QS
Sbjct: 14 EKLYAMPDP-AGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVW 72
Query: 266 LELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISA 325
+E+ VL +A R+ +L F +VL+++ + + + A+L+ + L + ++
Sbjct: 73 MEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREE 132
Query: 326 FACLCALTLI 335
+ L AL L
Sbjct: 133 YVLLKALALA 142
Score = 42.0 bits (98), Expect = 4e-05
Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 7/124 (5%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
LY P+P P + L + V +A IPGFS L DQ + QS +E
Sbjct: 16 LYAMPDP-AGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWME 74
Query: 207 LF------YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL 260
+ P E AE + + + ++ + L E +E +
Sbjct: 75 VLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYV 134
Query: 261 FQSA 264
A
Sbjct: 135 LLKA 138
>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 244
Score = 85.6 bits (211), Expect = 5e-20
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 2/146 (1%)
Query: 190 DLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGF 249
+ C+ E L Q A Y E + E QQ +T ++ + FA +I GF
Sbjct: 18 ETCQYTMEELHQLAWQTHTYEEIKAYQSKSRE-ALWQQCAIQITHAIQYVVEFAKRITGF 76
Query: 250 SDLCKEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAI 309
+LC+ DQ LL +S LE+ ++R+ + ++F + D +N
Sbjct: 77 MELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGSD-DLVNEA 135
Query: 310 LEFCQSLHLMEIDISAFACLCALTLI 335
+F ++L +++ A + LI
Sbjct: 136 FDFAKNLCSLQLTEEEIALFSSAVLI 161
Score = 45.5 bits (107), Expect = 3e-06
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 140 PVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL 199
++ T Y E + E QQ +T ++ + FA +I GF +LC+ DQ LL
Sbjct: 29 QLAWQTHTYEEIKAYQSKSRE-ALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILL 87
Query: 200 FQSASLELFY 209
+S LE+
Sbjct: 88 LKSGCLEVVL 97
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 83.9 bits (207), Expect = 1e-19
Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Query: 209 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 268
Y P+P P ++ + + L + VI +A IPGFS L DQ L QSA +E+
Sbjct: 17 YAMPDPTVPD-SDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEI 75
Query: 269 FVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFAC 328
+L + YR+ + + +L++ + ++++ Q + + D NAIL+ + M+++ F
Sbjct: 76 LILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVT 135
Query: 329 LCALTLI 335
L A+ L
Sbjct: 136 LKAIALA 142
Score = 40.0 bits (93), Expect = 2e-04
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 7/124 (5%)
Query: 147 LYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLE 206
+Y P+P P ++ + + L + VI +A IPGFS L DQ L QSA +E
Sbjct: 16 IYAMPDPTVPD-SDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWME 74
Query: 207 LF------YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELL 260
+ E A+ + + S L +D+ + + + E +E +
Sbjct: 75 ILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFV 134
Query: 261 FQSA 264
A
Sbjct: 135 TLKA 138
>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 246
Score = 83.2 bits (205), Expect = 3e-19
Identities = 23/122 (18%), Positives = 45/122 (36%)
Query: 214 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRL 273
PL + F + T V + F +P F L EDQ L + A++E+ + L
Sbjct: 45 PLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVL 104
Query: 274 AYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALT 333
+ + + + F ++L + F +L +++ + L A+
Sbjct: 105 NTTFCLQTQNFLCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMA 164
Query: 334 LI 335
L
Sbjct: 165 LF 166
Score = 48.1 bits (114), Expect = 4e-07
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 8/116 (6%)
Query: 153 PLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREP 212
PL + F + T V + F +P F L EDQ L + A++E+ +
Sbjct: 45 PLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVL 104
Query: 213 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 268
N + + L + ++ + + L+L
Sbjct: 105 NTTFCLQTQ--------NFLCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRKLQL 152
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 83.1 bits (205), Expect = 4e-19
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 5/126 (3%)
Query: 215 LEPPIAEPE-KIQQFYSLLTTSVDVIRH---FADKIPGFSDLCKEDQELLFQSASLELFV 270
+ I E +++ F+ TSV+ + FA IPGF++L DQ L + E
Sbjct: 58 VANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIF 117
Query: 271 LRLAYRTRAEDTKLIFCNGVVL-EKQQCQRSFGDDWLNAILEFCQSLHLMEIDISAFACL 329
L+ + + + NG + E + R D + +F + +E+D S +
Sbjct: 118 AMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLF 177
Query: 330 CALTLI 335
A +
Sbjct: 178 VAAIIC 183
Score = 44.6 bits (105), Expect = 6e-06
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 11/122 (9%)
Query: 154 LEPPIAEPE-KIQQFYSLLTTSVDVIRH---FADKIPGFSDLCKEDQELLFQSASLELF- 208
+ I E +++ F+ TSV+ + FA IPGF++L DQ L + E
Sbjct: 58 VANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIF 117
Query: 209 ------YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQ 262
+ L + SL D++ D F+ L +D ++
Sbjct: 118 AMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLF 177
Query: 263 SA 264
A
Sbjct: 178 VA 179
>d2fvja1 a.123.1.1 (A:207-477) Peroxisome proliferator activated
receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 81.6 bits (201), Expect = 2e-18
Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 5/140 (3%)
Query: 200 FQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFSDLCKED 256
++ ++ PL+ E I+ F SV+ ++ +A IPGF +L D
Sbjct: 49 LMMGEDKIKFKHITPLQEQSKEVA-IRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLND 107
Query: 257 QELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVL-EKQQCQRSFGDDWLNAILEFCQS 315
Q L + E+ LA + + G + E + R D++ EF
Sbjct: 108 QVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVK 167
Query: 316 LHLMEIDISAFACLCALTLI 335
+ +E+D S A A+ ++
Sbjct: 168 FNALELDDSDLAIFIAVIIL 187
Score = 44.2 bits (104), Expect = 9e-06
Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 15/147 (10%)
Query: 149 REPNPLEPPIAEPEKIQQFYSLLTTSVDVIRH---FADKIPGFSDLCKEDQELLFQSASL 205
+ PL+ E I+ F SV+ ++ +A IPGF +L DQ L +
Sbjct: 59 KHITPLQEQSKEVA-IRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVH 117
Query: 206 EL----FYREPNPLEPPIAEPEKI---QQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQE 258
E+ N I+E + + SL D + + F+ L +D +
Sbjct: 118 EIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSD 177
Query: 259 LLFQSASLELFVLRLAYRTRAEDTKLI 285
L A ++ R + K I
Sbjct: 178 L----AIFIAVIILSGDRPGLLNVKPI 200
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 255
Score = 81.3 bits (200), Expect = 2e-18
Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
Query: 211 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFV 270
+ +++ + L++ S+ + FA IPGF DL EDQ +L +S+++E+ +
Sbjct: 45 GGGSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIM 104
Query: 271 LRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG--DDWLNAILEFCQSLHLMEIDISAFAC 328
LR +D N + G + + +++F L + +
Sbjct: 105 LRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVL 164
Query: 329 LCALTLI 335
L A+ ++
Sbjct: 165 LMAICIV 171
Score = 45.5 bits (107), Expect = 3e-06
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 150 EPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY 209
+ +++ + L++ S+ + FA IPGF DL EDQ +L +S+++E+
Sbjct: 45 GGGSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIM 104
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 80.5 bits (198), Expect = 3e-18
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 218 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFVLRLAYRT 277
P +E + +L + + ++A ++PGF DL DQ L + A LE+ ++ L +R+
Sbjct: 30 PFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRS 89
Query: 278 RAEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
KL+F ++L++ Q + G + + +L +M + F CL ++ L+
Sbjct: 90 MEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILL 148
Score = 43.1 bits (101), Expect = 2e-05
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 139 PPVSLITALYR-EPNPLEP------PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDL 191
+++AL EP L P +E + +L + + ++A ++PGF DL
Sbjct: 5 TADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDL 64
Query: 192 CKEDQELLFQSASLELFY 209
DQ L + A LE+
Sbjct: 65 TLHDQVHLLECAWLEILM 82
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 80.1 bits (197), Expect = 4e-18
Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 4/131 (3%)
Query: 206 ELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 265
+ P+ P E + L + + +A KIPGF +L DQ L +S
Sbjct: 18 NVLVSRPSM---PFTEASMMMSLTKLADKELVHMIGWAKKIPGFVELSLLDQVRLLESCW 74
Query: 266 LELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFG-DDWLNAILEFCQSLHLMEIDIS 324
+E+ ++ L +R+ KLIF +VL++ + + G + + +L +++
Sbjct: 75 MEVLMVGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHK 134
Query: 325 AFACLCALTLI 335
+ C+ A+ L+
Sbjct: 135 EYLCVKAMILL 145
Score = 37.8 bits (87), Expect = 0.001
Identities = 22/170 (12%), Positives = 48/170 (28%), Gaps = 19/170 (11%)
Query: 157 PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLELFY----REP 212
P E + L + + +A KIPGF +L DQ L +S +E+
Sbjct: 27 PFTEASMMMSLTKLADKELVHMIGWAKKIPGFVELSLLDQVRLLESCWMEVLMVGLMWRS 86
Query: 213 NPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL---- 268
+ + + + R + G ++ + L+L
Sbjct: 87 IDHPGKL-----------IFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKE 135
Query: 269 FVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHL 318
++ A + E + + +A++ +
Sbjct: 136 YLCVKAMILLNSSMYPLASANQEAESSRKLTHLLNAVTDALVWVIAKSGI 185
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 242
Score = 77.4 bits (190), Expect = 4e-17
Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 7/148 (4%)
Query: 192 CKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSD 251
C+ D+ + L + N + + ++ I +A F +
Sbjct: 13 CEPDEPQVQAKIMAYLQQEQSNRNRQE--KLSAFGLLCKMADQTLFSIVEWARSSIFFRE 70
Query: 252 LCKEDQELLFQSASLELFVLRLAYRT--RAEDTKLIFCNGVVLEKQQCQRSFG---DDWL 306
L +DQ L Q+ EL +L YR ++ + G ++ ++ L
Sbjct: 71 LKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFNNLL 130
Query: 307 NAILEFCQSLHLMEIDISAFACLCALTL 334
+ E L ++ D F CL L L
Sbjct: 131 SLAQELVVRLRSLQFDQREFVCLKFLVL 158
Score = 41.2 bits (96), Expect = 7e-05
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 136 PPSPPV--SLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCK 193
P P V ++ L +E + + + ++ I +A F +L
Sbjct: 15 PDEPQVQAKIMAYLQQEQSNRNRQ-EKLSAFGLLCKMADQTLFSIVEWARSSIFFRELKV 73
Query: 194 EDQELLFQSASLELF 208
+DQ L Q+ EL
Sbjct: 74 DDQMKLLQNCWSELL 88
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 75.5 bits (185), Expect = 1e-16
Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 4/143 (2%)
Query: 197 ELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSL---LTTSVDVIRHFADKIPGFSDLC 253
L Q+ L P +KI + + + V+ +A IP F +L
Sbjct: 8 NALLQAEVLSRQITSPVSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELP 67
Query: 254 KEDQELLFQSASLELFVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEF 312
+DQ L ++ + E +L R+ L+ N ++ + + + + + E
Sbjct: 68 LDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPELAEMSRVSIRILDEL 127
Query: 313 CQSLHLMEIDISAFACLCALTLI 335
++ID + +A L A+
Sbjct: 128 VLPFQELQIDDNEYAYLKAIIFF 150
Score = 38.1 bits (88), Expect = 8e-04
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 125 LPSKPKSPQESPPSPPVSLITALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADK 184
L ++ S Q + P ++ + IA + + + + V+ +A
Sbjct: 11 LQAEVLSRQITSPVSGIN--------GDIRAKKIASIADVCE---SMKEQLLVLVEWAKY 59
Query: 185 IPGFSDLCKEDQELLFQSASLELF 208
IP F +L +DQ L ++ + E
Sbjct: 60 IPAFCELPLDDQVALLRAHAGEHL 83
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 73.6 bits (180), Expect = 6e-16
Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
Query: 209 YREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSASLEL 268
Y E N P + + + + + +A +IP FS+L +DQ +L ++ EL
Sbjct: 21 YVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNEL 80
Query: 269 FVLRLAYRTRAEDTKLIFCNGVVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFA 327
+ ++R+ A ++ G+ + + + G + + E + M++D +
Sbjct: 81 LIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELG 140
Query: 328 CLCALTLI 335
CL A+ L
Sbjct: 141 CLRAIVLF 148
Score = 35.4 bits (81), Expect = 0.006
Identities = 16/64 (25%), Positives = 28/64 (43%)
Query: 145 TALYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKEDQELLFQSAS 204
T Y E N P + + + + + +A +IP FS+L +DQ +L ++
Sbjct: 18 TETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGW 77
Query: 205 LELF 208
EL
Sbjct: 78 NELL 81
>d1g2na_ a.123.1.1 (A:) Ultraspiracle protein, usp {Heliothis
virescens [TaxId: 7102]}
Length = 256
Score = 70.5 bits (172), Expect = 1e-14
Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 20/158 (12%)
Query: 197 ELLFQSASLELFYREPNPLEP-PIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKE 255
E L S E + P P + + + + +A IP FS L E
Sbjct: 15 ESLVADPSEEFQFLRVGPDSNVPPKFRAPVSSLCQIGNKQIAALVVWARDIPHFSQLEME 74
Query: 256 DQELLFQSASLELFVLRLAYRT------------------RAEDTKLIFCNGVVLEKQQ- 296
DQ LL + + EL + +A+R+ + + G+ L +
Sbjct: 75 DQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLMPGMTLHRNSA 134
Query: 297 CQRSFGDDWLNAILEFCQSLHLMEIDISAFACLCALTL 334
Q G + + E + + +D + + L A+ L
Sbjct: 135 LQAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIIL 172
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 69.8 bits (170), Expect = 2e-14
Identities = 21/167 (12%), Positives = 52/167 (31%), Gaps = 29/167 (17%)
Query: 197 ELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFADKIPGFSDLCKED 256
E +L P P + ++ + + +A +P F+ + +D
Sbjct: 14 ETQCGDRALTFLRVGPYSTVQP-DYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDD 72
Query: 257 QELLFQSASLELFVLRLAYRT---------------------------RAEDTKLIFCNG 289
Q +L ++A +EL + +A+ + + +L
Sbjct: 73 QVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQS 132
Query: 290 VVLEKQQCQRS-FGDDWLNAILEFCQSLHLMEIDISAFACLCALTLI 335
+ ++ + + E + + +D +CL A+ L
Sbjct: 133 FSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILY 179
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 68.2 bits (166), Expect = 6e-14
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 8/133 (6%)
Query: 211 EPNPLE--PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSA 264
EP L + P+ + + L +A IPGF +L +DQ L Q +
Sbjct: 11 EPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYS 70
Query: 265 SLELFVLRLAYRTRA--EDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEID 322
+ L L +R+ L F +++ +Q+ D +L LH +++
Sbjct: 71 WMSLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPDMYDQCKHMLYVSSELHRLQVS 130
Query: 323 ISAFACLCALTLI 335
+ C+ L L+
Sbjct: 131 YEEYLCMKTLLLL 143
Score = 32.4 bits (73), Expect = 0.061
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 142 SLITALYR-EPNPLE--PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKE 194
+L++ L EP L + P+ + + L +A IPGF +L +
Sbjct: 2 TLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLD 61
Query: 195 DQELLFQSASLELF 208
DQ L Q + + L
Sbjct: 62 DQMTLLQYSWMSLM 75
>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 251
Score = 67.8 bits (165), Expect = 9e-14
Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 211 EPNPLE--PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSA 264
EP+ + +P+ + L + + ++ +PGF +L +DQ L Q +
Sbjct: 14 EPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYS 73
Query: 265 SLELFVLRLAYRT--RAEDTKLIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEID 322
+ L V L +R+ L F ++L +Q+ + S + + Q +++
Sbjct: 74 WMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVKLQVS 133
Query: 323 ISAFACLCALTLI 335
F C+ L L+
Sbjct: 134 QEEFLCMKVLLLL 146
Score = 32.3 bits (73), Expect = 0.068
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 142 SLITALYR-EPNPLE--PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKE 194
LI L EP+ + +P+ + L + + ++ +PGF +L +
Sbjct: 5 PLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHID 64
Query: 195 DQELLFQSASLELF 208
DQ L Q + + L
Sbjct: 65 DQITLIQYSWMSLM 78
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
troglodytes) [TaxId: 9598]}
Length = 250
Score = 64.0 bits (155), Expect = 2e-12
Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 8/133 (6%)
Query: 211 EPNPLE--PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCKEDQELLFQSA 264
EP + +P+ S L + + +A +PGF +L +DQ + Q +
Sbjct: 13 EPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYS 72
Query: 265 SLELFVLRLAYRTRAEDTK--LIFCNGVVLEKQQCQRSFGDDWLNAILEFCQSLHLMEID 322
+ L V + +R+ L F +V + + +S + Q ++I
Sbjct: 73 WMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQIT 132
Query: 323 ISAFACLCALTLI 335
F C+ AL L
Sbjct: 133 PQEFLCMKALLLF 145
Score = 29.7 bits (66), Expect = 0.44
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 140 PVSLITALYREPNPLE--PPIAEPEKIQQFYSLLTTSVD----VIRHFADKIPGFSDLCK 193
P+ L EP + +P+ S L + + +A +PGF +L
Sbjct: 3 PIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHV 62
Query: 194 EDQELLFQSASLELF 208
+DQ + Q + + L
Sbjct: 63 DDQMAVIQYSWMGLM 77
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300,
N-terminal domain {Bacteroides thetaiotaomicron [TaxId:
818]}
Length = 147
Score = 27.6 bits (60), Expect = 1.4
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 184 KIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTTSVDVIRHFA 243
++P F LC ED + L + E I Q LL + ++ +
Sbjct: 10 QLPLFQGLCHEDFTSILDKVKLHFIKHKAG--ETIIKSGNPCTQLCFLLKGEISIVTNAK 67
Query: 244 D 244
+
Sbjct: 68 E 68
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 26.5 bits (58), Expect = 2.1
Identities = 3/18 (16%), Positives = 10/18 (55%)
Query: 182 ADKIPGFSDLCKEDQELL 199
++ G+ +L ++E +
Sbjct: 73 LTELEGWEELEDNEKEQI 90
Score = 26.5 bits (58), Expect = 2.1
Identities = 3/18 (16%), Positives = 10/18 (55%)
Query: 243 ADKIPGFSDLCKEDQELL 260
++ G+ +L ++E +
Sbjct: 73 LTELEGWEELEDNEKEQI 90
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 26.2 bits (57), Expect = 3.0
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 175 VDVIRHFADKIPGFSDLCKEDQELLFQSASLELFYREPNPLEPPIAEPEKIQQFYSLLTT 234
+++I I S L + L E + + E+ +Y +L
Sbjct: 5 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAK---GGTVLFNQGEEGTSWYIILKG 61
Query: 235 SVDVIRHF 242
SV+V+ +
Sbjct: 62 SVNVVIYG 69
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7,
IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 93
Score = 25.2 bits (55), Expect = 5.2
Identities = 13/48 (27%), Positives = 15/48 (31%), Gaps = 10/48 (20%)
Query: 26 SPGCDTSRPTPPSPSQLCAVCGD----------IAACQHYGVRTCEGC 63
S G +P Q C +CGD AC G C C
Sbjct: 2 SSGSSGPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPC 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.416
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,215,404
Number of extensions: 58122
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 80
Length of query: 335
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 249
Effective length of database: 1,226,816
Effective search space: 305477184
Effective search space used: 305477184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)