BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2637
(502 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/298 (69%), Positives = 254/298 (85%)
Query: 205 SVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGL 264
+VDS LA ++++EI++ G+ V++ DIAGQ++AKQAL E+VILPSLRPELFTGLR P+RGL
Sbjct: 92 NVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGL 151
Query: 265 LLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSII 324
LLFGPPGNGKTMLA+AVA NATFF+ISAASLTSKYVG+GEKLVRALFA+ARELQPSII
Sbjct: 152 LLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSII 211
Query: 325 FIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR 384
FID+VDS+L ER+EGEH+ASRRLKTEFL+EFDG+ S + R+LVMGATNRPQELDEAVLR
Sbjct: 212 FIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR 271
Query: 385 RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAAL 444
RF KR+YV+LP+ +TR LL+ LL K G+PL+Q EL +A++T+GYSGSDLT LAKDAAL
Sbjct: 272 RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAAL 331
Query: 445 GPIRELNADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYGDVSL 502
GPIREL +QV + +RNI DF ESLK+I+RSVSP +L Y WN+D+GD ++
Sbjct: 332 GPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDTTV 389
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/295 (70%), Positives = 251/295 (85%), Gaps = 1/295 (0%)
Query: 209 KLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFG 268
KL Q++LDEI+EGG+ V+W DIAGQ+VAKQAL EMVILPS+RPELFTGLR P++GLLLFG
Sbjct: 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFG 61
Query: 269 PPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDE 328
PPGNGKT+LARAVAT C+ATF +ISAASLTSKYVG GEKLVRALFA+AR +QPSIIFIDE
Sbjct: 62 PPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDE 121
Query: 329 VDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSE-HRLLVMGATNRPQELDEAVLRRFS 387
VDS+LSER EHEASRRLKTEFL+EFDGL N + R++V+ ATNRPQELDEA LRRF+
Sbjct: 122 VDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFT 181
Query: 388 KRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPI 447
KR+YV+LPD +TR+ LL +LL K G+PL L +AK+T+GYSGSDLT LAKDAAL PI
Sbjct: 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 241
Query: 448 RELNADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYGDVSL 502
RELN +QV +D+ ++R I+ +DF SLKRIRRSV+P SL YE W++DYGD+++
Sbjct: 242 RELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDITI 296
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 340 bits (872), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 157/325 (48%), Positives = 233/325 (71%), Gaps = 14/325 (4%)
Query: 174 YGSGEKWERAQRLQEKMKNNLKMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQ 233
YG+G E A + E++KN ++ K+ +++++EI++ G PV W+DIAG
Sbjct: 44 YGAGPT-EPAHPVDERLKN-------------LEPKMIELIMNEIMDHGPPVNWEDIAGV 89
Query: 234 EVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSIS 293
E AK + E+V+ P LRP++FTGLR P +G+LLFGPPG GKT++ + +A+ ATFFSIS
Sbjct: 90 EFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSIS 149
Query: 294 AASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLL 353
A+SLTSK+VG+GEK+VRALFA+AR QP++IFIDE+DS+LS+R +GEHE+SRR+KTEFL+
Sbjct: 150 ASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLV 209
Query: 354 EFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGN 413
+ DG ++SE R+LV+GATNRPQE+DEA RR KR+Y+ LP++ RK ++ L++K
Sbjct: 210 QLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC 269
Query: 414 PLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLE 473
LS+ E++ + + ++ +SG+D+T L ++A+LGPIR L + + VR I+Y DF
Sbjct: 270 CLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFEN 329
Query: 474 SLKRIRRSVSPSSLIQYEAWNRDYG 498
+ + +R SVSP L YE WN+ +G
Sbjct: 330 AFRTVRPSVSPKDLELYENWNKTFG 354
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 254 bits (649), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 130/305 (42%), Positives = 196/305 (64%), Gaps = 32/305 (10%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATA 284
V+W+D+AG E AK+AL E VILP P LF G R P+ G+LL+GPPG GK+ LA+AVAT
Sbjct: 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107
Query: 285 CNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEAS 344
N+TFFS+S++ L SK++G+ EKLV+ LFAMARE +PSIIFID+VD++ R EGE EAS
Sbjct: 108 ANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEAS 167
Query: 345 RRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLL 404
RR+KTE L++ +G+ ++S+ +LV+GATN P +LD A+ RRF +RIY+ LPD R ++
Sbjct: 168 RRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMF 226
Query: 405 EKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNA------------ 452
E + + L++ + + +TEGYSGSD+ + KDA + PIR++ +
Sbjct: 227 EINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDD 286
Query: 453 ------------DQVIKVDLKSVR-------NISYRDFLESLKRIRRSVSPSSLIQYEAW 493
D I++ + +++ +DFL+++K R +V+ L++ E +
Sbjct: 287 ETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQF 346
Query: 494 NRDYG 498
RD+G
Sbjct: 347 TRDFG 351
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 131/305 (42%), Positives = 195/305 (63%), Gaps = 32/305 (10%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATA 284
V+W+D+AG E AK+AL E VILP P LF G R P+ G+LL+GPPG GK+ LA+AVAT
Sbjct: 24 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 83
Query: 285 CNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEAS 344
N+TFFS+S++ L SK++G+ EKLV+ LFAMARE +PSIIFIDEVD++ R EGE EAS
Sbjct: 84 ANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEAS 143
Query: 345 RRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLL 404
RR+KTE L++ +G+ ++S+ +LV+GATN P +LD A+ RRF +RIY+ LPD R ++
Sbjct: 144 RRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMF 202
Query: 405 EKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNA------------ 452
E + L++ + + +TEGYSGSD+ + KDA + PIR++ +
Sbjct: 203 EINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDD 262
Query: 453 ------------DQVIKVDLKSVR-------NISYRDFLESLKRIRRSVSPSSLIQYEAW 493
D I++ + +++ +DFL+++K R +V+ L++ E +
Sbjct: 263 ETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQF 322
Query: 494 NRDYG 498
RD+G
Sbjct: 323 TRDFG 327
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 130/305 (42%), Positives = 195/305 (63%), Gaps = 32/305 (10%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATA 284
V+W+D+AG E AK+AL E VILP P LF G R P+ G+LL+GPPG GK+ LA+AVAT
Sbjct: 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74
Query: 285 CNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEAS 344
N+TFFS+S++ L SK++G+ EKLV+ LFAMARE +PSIIFID+VD++ R EGE EAS
Sbjct: 75 ANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEAS 134
Query: 345 RRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLL 404
RR+KTE L++ +G+ ++S+ +LV+GATN P +LD A+ RRF +RIY+ LPD R ++
Sbjct: 135 RRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMF 193
Query: 405 EKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNA------------ 452
E + L++ + + +TEGYSGSD+ + KDA + PIR++ +
Sbjct: 194 EINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDD 253
Query: 453 ------------DQVIKVDLKSVR-------NISYRDFLESLKRIRRSVSPSSLIQYEAW 493
D I++ + +++ +DFL+++K R +V+ L++ E +
Sbjct: 254 ETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQF 313
Query: 494 NRDYG 498
RD+G
Sbjct: 314 TRDFG 318
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 130/305 (42%), Positives = 195/305 (63%), Gaps = 32/305 (10%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATA 284
V+W+D+AG E AK+AL E VILP P LF G R P+ G+LL+GPPG GK+ LA+AVAT
Sbjct: 33 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 92
Query: 285 CNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEAS 344
N+TFFS+S++ L SK++G+ EKLV+ LFAMARE +PSIIFID+VD++ R EGE EAS
Sbjct: 93 ANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEAS 152
Query: 345 RRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLL 404
RR+KTE L++ +G+ ++S+ +LV+GATN P +LD A+ RRF +RIY+ LPD R ++
Sbjct: 153 RRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMF 211
Query: 405 EKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNA------------ 452
E + L++ + + +TEGYSGSD+ + KDA + PIR++ +
Sbjct: 212 EINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDD 271
Query: 453 ------------DQVIKVDLKSVR-------NISYRDFLESLKRIRRSVSPSSLIQYEAW 493
D I++ + +++ +DFL+++K R +V+ L++ E +
Sbjct: 272 ETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQF 331
Query: 494 NRDYG 498
RD+G
Sbjct: 332 TRDFG 336
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 240 bits (612), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/247 (49%), Positives = 171/247 (69%), Gaps = 6/247 (2%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT- 283
V+W D+AG E AK+AL E VILP P LFTG RTP RG+LLFGPPG GK+ LA+AVAT
Sbjct: 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA 343
A N+TFFSIS++ L SK++G+ EKLV+ LF +ARE +PSIIFIDE+DS+ R E E EA
Sbjct: 191 ANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEA 250
Query: 344 SRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSL 403
+RR+KTEFL++ G+ +++ +LV+GATN P LD A+ RRF KRIY+ LP++ R ++
Sbjct: 251 ARRIKTEFLVQMQGVGVDNDG-ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAM 309
Query: 404 LEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSV 463
L N L++ + + + T+GYSG+D++ + +DA + P+R++ + K V
Sbjct: 310 FRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQS----ATHFKKV 365
Query: 464 RNISYRD 470
R S D
Sbjct: 366 RGPSRAD 372
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 238 bits (606), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 122/247 (49%), Positives = 171/247 (69%), Gaps = 6/247 (2%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT- 283
V+W D+AG E AK+AL E VILP P LFTG RTP RG+LLFGPPG GK+ LA+AVAT
Sbjct: 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA 343
A N+TFFSIS++ L SK++G+ EKLV+ LF +ARE +PSIIFIDE+DS+ R E E EA
Sbjct: 69 ANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEA 128
Query: 344 SRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSL 403
+RR+KTEFL++ G+ +++ +LV+GATN P LD A+ RRF KRIY+ LP+ R ++
Sbjct: 129 ARRIKTEFLVQMQGVGVDNDG-ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAM 187
Query: 404 LEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSV 463
+ L N L++ + + + T+GYSG+D++ + +DA + P+R++ + K V
Sbjct: 188 FKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQS----ATHFKKV 243
Query: 464 RNISYRD 470
R S D
Sbjct: 244 RGPSRAD 250
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/233 (41%), Positives = 144/233 (61%), Gaps = 11/233 (4%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRT-PSRGLLLFGPPGNGKTMLARAVAT 283
V+++DI G E Q + E+V LP PELF + P +G+LL+GPPG GKT+LA+AVAT
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE----G 339
NATF + + L K++G+G LV+ +F +A+E PSIIFIDE+D++ ++R + G
Sbjct: 74 ETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGG 133
Query: 340 EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDS 397
+ E R L + L E DG + + + ++GATNRP LD A+LR RF + I V PD
Sbjct: 134 DREVQRTL-MQLLAEMDGFDARGDVK--IIGATNRPDILDPAILRPGRFDRIIEVPAPDE 190
Query: 398 KTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIREL 450
K R +L K+ + N + L+ +AK+TEG G++L + +A + IREL
Sbjct: 191 KGRLEIL-KIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 161/289 (55%), Gaps = 24/289 (8%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGL-RTPSRGLLLFGPPGNGKTMLARAVAT 283
V W+DI G E K+ L E+V P P+ F TPS+G+L +GPPG GKT+LA+A+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSER---KEGE 340
C A F SI L + + G+ E VR +F AR+ P ++F DE+DS+ R
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 341 HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSK 398
A+ R+ + L E DG+ +++ + ++GATNRP +D A+LR R + IY+ LPD K
Sbjct: 594 GGAADRVINQILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651
Query: 399 TRKSLLEKLLNKHGNPLSQ-LELDAVAKLTEGYSGSDLTNLAKDAA-------------L 444
+R ++L+ L K +P+++ ++L+ +AK+T G+SG+DLT + + A
Sbjct: 652 SRVAILKANLRK--SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 709
Query: 445 GPIRELNADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAW 493
R+ N + + V I F E+++ RRSVS + + +YE +
Sbjct: 710 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMF 758
Score = 151 bits (382), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 130/228 (57%), Gaps = 6/228 (2%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRT-PSRGLLLFGPPGNGKTMLARAVAT 283
V + DI G + EMV LP P LF + P RG+LL+GPPG GKT++ARAVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA 343
A FF I+ + SK G+ E +R F A + P+IIFIDE+D++ +R++ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 344 SRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTRK 401
RR+ ++ L DGL + ++VM ATNRP +D A+ R RF + + + +PD+ R
Sbjct: 321 ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 402 SLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRE 449
+L+ + K+ ++L+ VA T G+ G+DL L +AAL IR+
Sbjct: 379 EILQ-IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 161/289 (55%), Gaps = 24/289 (8%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGL-RTPSRGLLLFGPPGNGKTMLARAVAT 283
V W+DI G E K+ L E+V P P+ F TPS+G+L +GPPG GKT+LA+A+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSER---KEGE 340
C A F SI L + + G+ E VR +F AR+ P ++F DE+DS+ R
Sbjct: 534 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593
Query: 341 HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSK 398
A+ R+ + L E DG+ +++ + ++GATNRP +D A+LR R + IY+ LPD K
Sbjct: 594 GGAADRVINQILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651
Query: 399 TRKSLLEKLLNKHGNPLSQ-LELDAVAKLTEGYSGSDLTNLAKDAA-------------L 444
+R ++L+ L K +P+++ ++L+ +AK+T G+SG+DLT + + A
Sbjct: 652 SRVAILKANLRK--SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 709
Query: 445 GPIRELNADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAW 493
R+ N + + V I F E+++ RRSVS + + +YE +
Sbjct: 710 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMF 758
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 130/228 (57%), Gaps = 6/228 (2%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRT-PSRGLLLFGPPGNGKTMLARAVAT 283
V + D+ G + EMV LP P LF + P RG+LL+GPPG GKT++ARAVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA 343
A FF I+ + SK G+ E +R F A + P+IIFIDE+D++ +R++ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 344 SRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTRK 401
RR+ ++ L DGL + ++VM ATNRP +D A+ R RF + + + +PD+ R
Sbjct: 321 ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 402 SLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRE 449
+L+ + K+ ++L+ VA T G+ G+DL L +AAL IR+
Sbjct: 379 EILQ-IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 161/289 (55%), Gaps = 24/289 (8%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGL-RTPSRGLLLFGPPGNGKTMLARAVAT 283
V W+DI G E K+ L E+V P P+ F TPS+G+L +GPPG GKT+LA+A+A
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSER---KEGE 340
C A F SI L + + G+ E VR +F AR+ P ++F DE+DS+ R
Sbjct: 72 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 131
Query: 341 HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSK 398
A+ R+ + L E DG+ +++ + ++GATNRP +D A+LR R + IY+ LPD K
Sbjct: 132 GGAADRVINQILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 189
Query: 399 TRKSLLEKLLNKHGNPLSQ-LELDAVAKLTEGYSGSDLTNLAKDAA-------------L 444
+R ++L+ L K +P+++ ++L+ +AK+T G+SG+DLT + + A
Sbjct: 190 SRVAILKANLRK--SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247
Query: 445 GPIRELNADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAW 493
R+ N + + V I F E+++ RRSVS + + +YE +
Sbjct: 248 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMF 296
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 151/283 (53%), Gaps = 26/283 (9%)
Query: 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFT--GLRTPSRGLLLFGPPGNGKTMLA 278
G V ++D+ G E A + L E+V P F G R P +G+LL GPPG GKT+LA
Sbjct: 9 GNKRVTFKDVGGAEEAIEELKEVVEFLK-DPSKFNRIGARMP-KGILLVGPPGTGKTLLA 66
Query: 279 RAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE 338
RAVA N FF IS + +VG G VR LFA A+ P I+FIDE+D+V R
Sbjct: 67 RAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126
Query: 339 ---GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVT 393
G H+ + + L+E DG +S+ ++VM ATNRP LD A+LR RF K+I V
Sbjct: 127 GLGGGHDEREQTLNQLLVEMDGF--DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVD 184
Query: 394 LPDSKTRKSLLEKLLNKHGNPLSQ-LELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNA 452
PD RK +LE ++ PL++ + L+ +AK T G+ G+DL NL +AAL RE
Sbjct: 185 PPDMLGRKKILE--IHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE--- 239
Query: 453 DQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNR 495
I+ +DF E++ R+ + SL+ A R
Sbjct: 240 ---------GRDKITMKDFEEAIDRVIAGPARKSLLISPAEKR 273
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 157 bits (398), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 150/283 (53%), Gaps = 26/283 (9%)
Query: 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFT--GLRTPSRGLLLFGPPGNGKTMLA 278
G V ++D+ G E A + L E+V P F G R P +G+LL GPPG G T+LA
Sbjct: 9 GNKRVTFKDVGGAEEAIEELKEVVEFLK-DPSKFNRIGARMP-KGILLVGPPGTGATLLA 66
Query: 279 RAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE 338
RAVA N FF IS + +VG G VR LFA A+ P I+FIDE+D+V R
Sbjct: 67 RAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126
Query: 339 ---GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVT 393
G H+ + + L+E DG +S+ ++VM ATNRP LD A+LR RF K+I V
Sbjct: 127 GLGGGHDEREQTLNQLLVEMDGF--DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVD 184
Query: 394 LPDSKTRKSLLEKLLNKHGNPLSQ-LELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNA 452
PD RK +LE ++ PL++ + L+ +AK T G+ G+DL NL +AAL RE
Sbjct: 185 PPDMLGRKKILE--IHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE--- 239
Query: 453 DQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNR 495
I+ +DF E++ R+ + SL+ A R
Sbjct: 240 ---------GRDKITMKDFEEAIDRVIAGPARKSLLISPAEKR 273
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 153/268 (57%), Gaps = 14/268 (5%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFT--GLRTPSRGLLLFGPPGNGKTMLARAVA 282
V W DI E ++ L ++ P P+ F GL TP+ G+LL GPPG GKT+LA+AVA
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKAVA 65
Query: 283 TACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHE 342
F S+ L + YVG+ E+ VR +F A+ P +IF DEVD++ R + E
Sbjct: 66 NESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETG 125
Query: 343 ASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTR 400
AS R+ + L E DGL + ++ +M ATNRP +D A+LR R K ++V LP R
Sbjct: 126 ASVRVVNQLLTEMDGLE--ARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183
Query: 401 KSLLEKLLNKHGN--PL-SQLELDAVAK--LTEGYSGSDLTNLAKDAALGPIRELNADQV 455
++L K + K+G PL + + L+A+A + Y+G+DL+ L ++A++ +R+ A Q
Sbjct: 184 LAIL-KTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQK 242
Query: 456 IKVDLKSVRNISYRDFLESLKRIRRSVS 483
+ K +S++ F E+ K++R S+S
Sbjct: 243 -SGNEKGELKVSHKHFEEAFKKVRSSIS 269
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 152 bits (383), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 130/228 (57%), Gaps = 6/228 (2%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRT-PSRGLLLFGPPGNGKTMLARAVAT 283
V + DI G + EMV LP P LF + P RG+LL+GPPG GKT++ARAVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA 343
A FF I+ + SK G+ E +R F A + P+IIFIDE+D++ +R++ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 344 SRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTRK 401
RR+ ++ L DGL + ++VM ATNRP +D A+ R RF + + + +PD+ R
Sbjct: 321 ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 402 SLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRE 449
+L+ + K+ ++L+ VA T G+ G+DL L +AAL IR+
Sbjct: 379 EILQ-IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 130/228 (57%), Gaps = 6/228 (2%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRT-PSRGLLLFGPPGNGKTMLARAVAT 283
V + DI G + EMV LP P LF + P RG+LL+GPPG GKT++ARAVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA 343
A FF I+ + SK G+ E +R F A + P+IIFIDE+D++ +R++ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 344 SRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTRK 401
RR+ ++ L DGL + ++VM ATNRP +D A+ R RF + + + +PD+ R
Sbjct: 321 ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 402 SLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRE 449
+L+ + K+ ++L+ VA T G+ G+DL L +AAL IR+
Sbjct: 379 EILQ-IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 130/228 (57%), Gaps = 6/228 (2%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRT-PSRGLLLFGPPGNGKTMLARAVAT 283
V + DI G + EMV LP P LF + P RG+LL+GPPG GKT++ARAVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA 343
A FF I+ + SK G+ E +R F A + P+IIFIDE+D++ +R++ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 344 SRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTRK 401
RR+ ++ L DGL + ++VM ATNRP +D A+ R RF + + + +PD+ R
Sbjct: 321 ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 402 SLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRE 449
+L+ + K+ ++L+ VA T G+ G+DL L +AAL IR+
Sbjct: 379 EILQ-IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 151 bits (381), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 130/228 (57%), Gaps = 6/228 (2%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRT-PSRGLLLFGPPGNGKTMLARAVAT 283
V + D+ G + EMV LP P LF + P RG+LL+GPPG GKT++ARAVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA 343
A FF I+ + SK G+ E +R F A + P+IIFIDE+D++ +R++ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 344 SRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTRK 401
RR+ ++ L DGL + ++VM ATNRP +D A+ R RF + + + +PD+ R
Sbjct: 321 ERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 402 SLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRE 449
+L+ + K+ ++L+ VA T G+ G+DL L +AAL IR+
Sbjct: 379 EILQ-IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 145 bits (365), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 144/252 (57%), Gaps = 15/252 (5%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELF--TGLRTPSRGLLLFGPPGNGKTMLARAVA 282
+ + I G + L E++ LP PE+F G++ P +G+LL+GPPG GKT+LA+AVA
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK-PPKGVLLYGPPGTGKTLLAKAVA 236
Query: 283 TACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSV----LSERKE 338
A F A+ + KY+G+ +++R +FA A+E +P IIF+DEVD++ SE
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 339 GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPD 396
+ E R L E L + DG + + ++++ ATNRP LD A+LR R +++ + LP+
Sbjct: 297 ADREIQRTL-MELLTQMDGFDNLGQTKIIM--ATNRPDTLDPALLRPGRLDRKVEIPLPN 353
Query: 397 SKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVI 456
R + K+ + + +A K+++G++G+D+ N A +A IR+ + D +
Sbjct: 354 EAGRLEIF-KIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD-DRDHIN 411
Query: 457 KVDL-KSVRNIS 467
DL K+VR ++
Sbjct: 412 PDDLMKAVRKVA 423
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 136/228 (59%), Gaps = 18/228 (7%)
Query: 227 WQDIAGQEVAKQALHEMVILPSLR-PELFT--GLRTPSRGLLLFGPPGNGKTMLARAVAT 283
+ D+AG + AK+ + E+V LR P F G + P +G+L+ GPPG GKT+LA+A+A
Sbjct: 11 FADVAGCDEAKEEVAELV--EYLREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAKAIAG 67
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE---GE 340
FF+IS + +VG G VR +F A++ P IIFIDE+D+V +R G
Sbjct: 68 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG 127
Query: 341 HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSK 398
H+ + + L+E DG N ++V+ ATNRP LD A+LR RF +++ V LPD +
Sbjct: 128 HDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 185
Query: 399 TRKSLLEKLLNKHGNPLSQLELDA--VAKLTEGYSGSDLTNLAKDAAL 444
R+ +L+ + + PL+ ++DA +A+ T G+SG+DL NL +AAL
Sbjct: 186 GREQILKVHMRRV--PLAP-DIDAAIIARGTPGFSGADLANLVNEAAL 230
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 157/288 (54%), Gaps = 31/288 (10%)
Query: 207 DSKLAQVVLDEILEGGSPVQ-WQDIAGQEVAKQALHEMVILPSLRPELF--TGLRTPSRG 263
DS++ + +DE P + + D+ G + + L E ++LP R + F G+R P +G
Sbjct: 164 DSRVKAMEVDE-----KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KG 217
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSI 323
L++GPPG GKT+LARA A NATF ++A L Y+G+G KLVR FA+A+E P+I
Sbjct: 218 ALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTI 277
Query: 324 IFIDEVDSVLSER----KEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELD 379
IFIDE+D++ ++R K G+ E R + E L + DG +S+ R+ V+ ATNR LD
Sbjct: 278 IFIDELDAIGTKRFDSEKSGDREVQRTM-LELLNQLDGF--SSDDRVKVLAATNRVDVLD 334
Query: 380 EAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTN 437
A+LR R ++I LP +R +L+ + ++ + +A+ T+ ++G+ L
Sbjct: 335 PALLRSGRLDRKIEFPLPSEDSRAQILQ-IHSRKMTTDDDINWQELARSTDEFNGAQLKA 393
Query: 438 LAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPS 485
+ +A + +R N +K + DF+E + ++ S S
Sbjct: 394 VTVEAGMIALR--NGQSSVK----------HEDFVEGISEVQARKSKS 429
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 142/256 (55%), Gaps = 13/256 (5%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRT-PSRGLLLFGPPGNGKTMLARAVAT 283
V + D+ G + + L E+V LP L PE F L P +G+LL+GPPG GKT+ ARAVA
Sbjct: 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE----G 339
+ATF + + L KYVG+G ++VR LF MAR + IIF DE+D+V R + G
Sbjct: 266 RTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGG 325
Query: 340 EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDS 397
++E R + E + + DG + + VM ATNRP LD A+LR R +++ +LPD
Sbjct: 326 DNEVQRTM-LELITQLDGF--DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDL 382
Query: 398 KTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIK 457
+ R ++ ++ +K + + + +++L +G++L ++ +A + IR K
Sbjct: 383 EGRANIF-RIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEK 441
Query: 458 VDLKSVRNI--SYRDF 471
LK+V + Y+ F
Sbjct: 442 DFLKAVDKVISGYKKF 457
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 133/228 (58%), Gaps = 12/228 (5%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFT--GLRTPSRGLLLFGPPGNGKTMLARAVA 282
V+++D+AG E AK+ + E+V PE + G + P +G+LL GPPG GKT+LA+AVA
Sbjct: 8 VRFKDMAGNEEAKEEVVEIVDFLKY-PERYANLGAKIP-KGVLLVGPPGTGKTLLAKAVA 65
Query: 283 TACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG--- 339
+ FFS+ +S +VG G VR LF A++ PSIIFIDE+D++ R G
Sbjct: 66 GEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV 125
Query: 340 -EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPD 396
++ + + L E DG S + ++V+ ATNRP+ LD A++R RF +++ V PD
Sbjct: 126 SGNDEREQTLNQLLAEMDGFGSENAP-VIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184
Query: 397 SKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAAL 444
R +L K+ K + + L VAKLT G +G+DL N+ +AAL
Sbjct: 185 FNGRVEIL-KVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAAL 231
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 125/217 (57%), Gaps = 11/217 (5%)
Query: 240 LHEMVILPSLRPELFT--GLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297
+ E++ LP PELF G+ P +G++L+GPPG GKT+LARAVA + F +S A L
Sbjct: 160 IKEVIELPVKHPELFESLGIAQP-KGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL 218
Query: 298 TSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEAS---RRLKTEFLLE 354
KY+G+G ++VR LF MARE PSIIF+DE+DS+ S R EG +R E L +
Sbjct: 219 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQ 278
Query: 355 FDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHG 412
DG ++ ++++ ATNR LD A+LR R ++I P R +L ++ ++
Sbjct: 279 LDGFETSKNIKIIM--ATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEIL-RIHSRKM 335
Query: 413 NPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRE 449
N + L VA+ G SG+D+ + +A + +RE
Sbjct: 336 NLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 146/244 (59%), Gaps = 11/244 (4%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRT-PSRGLLLFGPPGNGKTMLARAVAT 283
V + D+ G ++ KQ + E V LP ++ +L+ + P RG+LL+GPPG GKTML +AVA
Sbjct: 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA 343
+ A F ++ + KY+G+G ++VR +F +ARE PSIIFIDEVDS+ ++R + + +
Sbjct: 229 STKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGS 288
Query: 344 SR---RLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRI-YVTLPDS 397
R R+ E L + DG ++ ++++ ATNR LD A+LR R ++I + +L D
Sbjct: 289 DREVQRILIELLTQMDGFDQSTNVKVIM--ATNRADTLDPALLRPGRLDRKIEFPSLRDR 346
Query: 398 KTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIK 457
+ R+ + + +K + + +LD++ + SG+ + + ++A L +R+ N +++
Sbjct: 347 RERRLIFGTIASKM-SLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK-NRYVILQ 404
Query: 458 VDLK 461
DL+
Sbjct: 405 SDLE 408
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 141/254 (55%), Gaps = 21/254 (8%)
Query: 223 SPVQ-WQDIAGQEVAKQALHEMVILPSLRPELF--TGLRTPSRGLLLFGPPGNGKTMLAR 279
SP + + DI G E Q + E V LP PEL+ G++ P +G++L+G PG GKT+LA+
Sbjct: 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK-PPKGVILYGAPGTGKTLLAK 234
Query: 280 AVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE- 338
AVA +ATF I + L KY+G G +L R +F +A E PSI+FIDE+D++ ++R +
Sbjct: 235 AVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDS 294
Query: 339 ---GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVT 393
GE E R + E L + DG + ++++ ATN+ + LD A++R R ++I
Sbjct: 295 NSGGEREIQRTM-LELLNQLDGFDDRGDVKVIM--ATNKIETLDPALIRPGRIDRKILFE 351
Query: 394 LPDSKTRKSLLEKLLNKHGNPLS---QLELDAVAKLTEGYSGSDLTNLAKDAALGPIREL 450
PD T+K K+L H + ++ + L+ + + SG+D+ + +A L +RE
Sbjct: 352 NPDLSTKK----KILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER 407
Query: 451 NADQVIKVDLKSVR 464
QV D K +
Sbjct: 408 RM-QVTAEDFKQAK 420
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 129/229 (56%), Gaps = 16/229 (6%)
Query: 215 LDEILEGGSPVQWQDIAGQEVAKQALHEMVIL---PSLRPELFTGLRTPSRGLLLFGPPG 271
L +L V ++D+AG E AK+ L E+V PS E+ G R P +G+LL GPPG
Sbjct: 3 LGSVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEM--GARIP-KGVLLVGPPG 59
Query: 272 NGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDS 331
GKT LARAVA F + S + +VG G VR LF A+ P I+FIDE+D+
Sbjct: 60 VGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA 119
Query: 332 VLSERKE---GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RF 386
V +R G ++ + + L+E DG ++ ++VM ATNRP LD A+LR RF
Sbjct: 120 VGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRF 177
Query: 387 SKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQ-LELDAVAKLTEGYSGSD 434
++I + PD K R+ +L ++ G PL++ ++L +AK T G+ G+D
Sbjct: 178 DRQIAIDAPDVKGREQILR--IHARGKPLAEDVDLALLAKRTPGFVGAD 224
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 126/219 (57%), Gaps = 16/219 (7%)
Query: 225 VQWQDIAGQEVAKQALHEMVIL---PSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAV 281
V ++D+AG E AK+ L E+V PS E+ G R P +G+LL GPPG GKT LARAV
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEM--GARIP-KGVLLVGPPGVGKTHLARAV 93
Query: 282 ATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE--- 338
A F + S + +VG G VR LF A+ P I+FIDE+D+V +R
Sbjct: 94 AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 153
Query: 339 GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPD 396
G ++ + + L+E DG ++ ++VM ATNRP LD A+LR RF ++I + PD
Sbjct: 154 GGNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 211
Query: 397 SKTRKSLLEKLLNKHGNPLSQ-LELDAVAKLTEGYSGSD 434
K R+ +L ++ G PL++ ++L +AK T G+ G+D
Sbjct: 212 VKGREQILR--IHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 126/219 (57%), Gaps = 16/219 (7%)
Query: 225 VQWQDIAGQEVAKQALHEMVIL---PSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAV 281
V ++D+AG E AK+ L E+V PS E+ G R P +G+LL GPPG GKT LARAV
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEM--GARIP-KGVLLVGPPGVGKTHLARAV 93
Query: 282 ATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE--- 338
A F + S + +VG G VR LF A+ P I+FIDE+D+V +R
Sbjct: 94 AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 153
Query: 339 GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPD 396
G ++ + + L+E DG ++ ++VM ATNRP LD A+LR RF ++I + PD
Sbjct: 154 GGNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 211
Query: 397 SKTRKSLLEKLLNKHGNPLSQ-LELDAVAKLTEGYSGSD 434
K R+ +L ++ G PL++ ++L +AK T G+ G+D
Sbjct: 212 VKGREQILR--IHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 126/219 (57%), Gaps = 16/219 (7%)
Query: 225 VQWQDIAGQEVAKQALHEMVIL---PSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAV 281
V ++D+AG E AK+ L E+V PS E+ G R P +G+LL GPPG GKT LARAV
Sbjct: 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEM--GARIP-KGVLLVGPPGVGKTHLARAV 84
Query: 282 ATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE--- 338
A F + S + +VG G VR LF A+ P I+FIDE+D+V +R
Sbjct: 85 AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 144
Query: 339 GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPD 396
G ++ + + L+E DG ++ ++VM ATNRP LD A+LR RF ++I + PD
Sbjct: 145 GGNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 202
Query: 397 SKTRKSLLEKLLNKHGNPLSQ-LELDAVAKLTEGYSGSD 434
K R+ +L ++ G PL++ ++L +AK T G+ G+D
Sbjct: 203 VKGREQILR--IHARGKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 127/235 (54%), Gaps = 15/235 (6%)
Query: 225 VQWQDIAGQEVAKQALHEMV-ILPSLRPELFT--GLRTPSRGLLLFGPPGNGKTMLARAV 281
V ++D+AG AK + E V L S PE F G + P +G LL GPPG GKT+LA+AV
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDYLKS--PERFLQLGAKVP-KGALLLGPPGCGKTLLAKAV 59
Query: 282 ATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG-- 339
AT F +++ A G G VR+LF AR P I++IDE+D+V +R
Sbjct: 60 ATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMS 119
Query: 340 --EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLP 395
+ + + L+E DG+ ++H ++V+ +TNR LD A++R R + +++ LP
Sbjct: 120 GFSNTEEEQTLNQLLVEMDGM-GTTDH-VIVLASTNRADILDGALMRPGRLDRHVFIDLP 177
Query: 396 DSKTRKSLLEKLLNKHG-NPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRE 449
+ R+ + E+ L S +A+LT G+SG+D+ N+ +AAL RE
Sbjct: 178 TLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232
>pdb|3EAB|A Chain A, Crystal Structure Of Spastin Mit In Complex With Escrt Iii
pdb|3EAB|B Chain B, Crystal Structure Of Spastin Mit In Complex With Escrt Iii
pdb|3EAB|C Chain C, Crystal Structure Of Spastin Mit In Complex With Escrt Iii
pdb|3EAB|D Chain D, Crystal Structure Of Spastin Mit In Complex With Escrt Iii
pdb|3EAB|E Chain E, Crystal Structure Of Spastin Mit In Complex With Escrt Iii
pdb|3EAB|F Chain F, Crystal Structure Of Spastin Mit In Complex With Escrt Iii
Length = 89
Score = 81.3 bits (199), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/77 (59%), Positives = 58/77 (75%), Gaps = 2/77 (2%)
Query: 129 HRKAFDLISKALKIDE-ENTGNKDVAIEFYKKGISELDKGIAVNCYYGSGEKWERAQRLQ 187
H++AF+ IS AL+IDE E G K+ A+E+YKKGI EL+KGIAV G GE+ ERA+RLQ
Sbjct: 13 HKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAV-IVTGQGEQCERARRLQ 71
Query: 188 EKMKNNLKMAKERLSIL 204
KM NL MAK+RL +L
Sbjct: 72 AKMMTNLVMAKDRLQLL 88
>pdb|2DL1|A Chain A, Solution Structure Of The Mit Domain From Human Spartin
Length = 116
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 126 KEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNCYYG--SGEKWERA 183
+E ++KAF ++K L DE G K+ A +YK+GI L +GI+++ +G WE A
Sbjct: 16 REAYKKAFLFVNKGLNTDE--LGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESA 73
Query: 184 QRLQEKMKNNLKMAKERLSIL 204
+++Q+KMK L+ + RL IL
Sbjct: 74 RQMQQKMKETLQNVRTRLEIL 94
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 24/132 (18%)
Query: 228 QDIAGQEVAKQAL--------HEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLAR 279
Q I GQ AK+A+ M + LR E+ TP + +L+ GP G GKT +AR
Sbjct: 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEV-----TP-KNILMIGPTGVGKTEIAR 68
Query: 280 AVATACNATFFSISAASLTS-KYVG-QGEKLVRALF-----AMARELQPSIIFIDEVDSV 332
+A NA F + A T YVG + + ++R L A+ Q I+FIDE+D +
Sbjct: 69 RLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128
Query: 333 LSERKEGEHEAS 344
K+GE+ +
Sbjct: 129 C---KKGEYSGA 137
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 46/178 (25%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARE----L 319
++L+GPPG GKT LA +A NA ISA V G K +R AR+
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAG 105
Query: 320 QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGAT--NRPQE 377
+ +I+F+DEV H ++ + FL + + + +GAT N E
Sbjct: 106 RRTILFVDEV-----------HRFNKSQQDAFLPHIE------DGTITFIGATTENPSFE 148
Query: 378 LDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDL 435
L+ A+L R R+Y LL+ L + + Q+ A+ T GY G D+
Sbjct: 149 LNSALLSR--ARVY-----------LLKSLSTED---IEQVLTQAMEDKTRGYGGQDI 190
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 230 IAGQEVAKQALHEMVI--LPSLR-PELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN 286
+ GQE AK+ L V LR + G+ +LL GP G+GKT+LA +A +
Sbjct: 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76
Query: 287 ATFFSISAASLT-SKYVGQG-----EKLVRALFAMARELQPSIIFIDEVDSV 332
F A +LT + YVG+ +KL++ ++ Q I++ID++D +
Sbjct: 77 VPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 230 IAGQEVAKQALHEMVI--LPSLR-PELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN 286
+ GQE AK+ L V LR + G+ +LL GP G+GKT+LA +A +
Sbjct: 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76
Query: 287 ATFFSISAASLT-SKYVGQG-----EKLVRALFAMARELQPSIIFIDEVDSV 332
F A +LT + YVG+ +KL++ ++ Q I++ID++D +
Sbjct: 77 VPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLT-SKYVGQG-----EKLVRALFAMAR 317
+LL GP G+GKT++A+ +A + A SLT + YVG+ +L++A +
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 318 ELQPSIIFIDEVDSV--LSERK 337
+ Q I+FIDE+D + LSE +
Sbjct: 135 KAQKGIVFIDEIDKISRLSENR 156
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 258 RTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGE----KLVRALF 313
RTP +LL GPP +GKT LA +A N F I + K +G E + ++ +F
Sbjct: 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIF 117
Query: 314 AMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATN 373
A + Q S + +D+++ +L G ++ L+ +L +LL++G T+
Sbjct: 118 DDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQG--RKLLIIGTTS 175
Query: 374 RPQELDEA-VLRRFSKRIYV 392
R L E +L FS I+V
Sbjct: 176 RKDVLQEMEMLNAFSTTIHV 195
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 258 RTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGE----KLVRALF 313
RTP +LL GPP +GKT LA +A N F I + K +G E + ++ +F
Sbjct: 60 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIF 116
Query: 314 AMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATN 373
A + Q S + +D+++ +L G ++ L+ +L +LL++G T+
Sbjct: 117 DDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQG--RKLLIIGTTS 174
Query: 374 RPQELDEA-VLRRFSKRIYV 392
R L E +L FS I+V
Sbjct: 175 RKDVLQEMEMLNAFSTTIHV 194
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 30/150 (20%)
Query: 265 LLFGPPGNGKTMLARAVA----------TACNATFFSISAASL--TSKYVGQGEKLVRAL 312
LL G G GKT +A +A + T +S+ SL +KY G EK +AL
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 313 FAMARELQPSIIFIDEVDSVLSERKE--GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMG 370
+ SI+FIDE+ +++ G+ +A+ +K LL S ++ V+G
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKP--LL--------SSGKIRVIG 320
Query: 371 ATNRPQ-----ELDEAVLRRFSKRIYVTLP 395
+T + E D A+ RRF K I +T P
Sbjct: 321 STTYQEFSNIFEKDRALARRFQK-IDITEP 349
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P + GQE KQ L + R E P LLLFGPPG GKT LA +A
Sbjct: 8 PKTLDEYIGQERLKQKLRVYLEAAKARKE-------PLEHLLLFGPPGLGKTTLAHVIAH 60
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE----- 338
S ++ G+ + A+ A + E + I+FIDE+ + + +E
Sbjct: 61 ELGVNLRVTSGPAIEKP----GD--LAAILANSLE-EGDILFIDEIHRLSRQAEEHLYPA 113
Query: 339 ----------GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFS 387
G+ A+R ++ E R ++GAT RP + +L RF
Sbjct: 114 MEDFVMDIVIGQGPAARTIRLEL------------PRFTLIGATTRPGLITAPLLSRFG 160
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 257 LRTPSRGLLLFGPPGNGKTMLARAVATAC----------NATFFSISAASL--TSKYVGQ 304
LR +L G PG GKT + +A S+ SL +KY G+
Sbjct: 50 LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGE 109
Query: 305 GEKLVRALFAMARELQPSII-FIDEVDSVLSERK-EGEHEASRRLKTEFLLEFDGLHSNS 362
E+ ++A+ + Q +I FIDE+ +V+ K EG +A LK +
Sbjct: 110 FEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL--------ARG 161
Query: 363 EHRLLVMGATN----RPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK----HGNP 414
E RL+ GAT R E D A+ RRF +YV P + S+L L K HG
Sbjct: 162 ELRLI--GATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVR 218
Query: 415 LSQLELDAVAKLTEGY 430
+S + A A L+ Y
Sbjct: 219 ISDSAIIAAATLSHRY 234
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P + GQE KQ L + R E P LLLFGPPG GKT LA +A
Sbjct: 8 PKTLDEYIGQERLKQKLRVYLEAAKARKE-------PLEHLLLFGPPGLGKTTLAHVIAH 60
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE----- 338
S ++ G+ + A+ A + E + I+FIDE+ + + +E
Sbjct: 61 ELGVNLRVTSGPAIEKP----GD--LAAILANSLE-EGDILFIDEIHRLSRQAEEHLYPA 113
Query: 339 ----------GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFS 387
G+ A+R ++ E R ++GAT RP + +L RF
Sbjct: 114 MEDFVMDIVIGQGPAARTIRLEL------------PRFTLIGATTRPGLITAPLLSRFG 160
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P + GQE KQ L + E + P LLLFGPPG GKT LA +A
Sbjct: 8 PKTLDEYIGQERLKQKLRVYL-------EAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE----- 338
S ++ G+ + A+ A + E + I+FIDE+ + + +E
Sbjct: 61 ELGVNLRVTSGPAIEKP----GD--LAAILANSLE-EGDILFIDEIHRLSRQAEEHLYPA 113
Query: 339 ----------GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFS 387
G+ A+R ++ E R ++GAT RP + +L RF
Sbjct: 114 MEDFVMDIVIGQGPAARTIRLEL------------PRFTLIGATTRPGLITAPLLSRFG 160
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 257 LRTPSRGLLLFGPPGNGKTMLARAVATAC----------NATFFSISAASLT--SKYVGQ 304
LR +L G PG GKT + +A S+ SL +KY G+
Sbjct: 187 LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGE 246
Query: 305 GEKLVRALFAMARELQPSII-FIDEVDSVLSERK-EGEHEASRRLKTEFLLEFDGLHSNS 362
E+ ++A+ + Q +I FIDE+ +V+ K EG +A LK +
Sbjct: 247 FEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL--------ARG 298
Query: 363 EHRLLVMGATN----RPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK----HGNP 414
E RL+ GAT R E D A+ RRF +YV P + S+L L K HG
Sbjct: 299 ELRLI--GATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVR 355
Query: 415 LSQLELDAVAKLTEGY 430
+S + A A L+ Y
Sbjct: 356 ISDSAIIAAATLSHRY 371
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 255 TGLRTPSRGL---LLFGPPGNGKTMLARAVATACNATFFSISAASL 297
GL+ P+R + L GP G GKT LA+ +A AT F A +
Sbjct: 579 AGLKDPNRPIGSFLFLGPTGVGKTELAKTLA----ATLFDTEEAMI 620
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 228 QDIAGQEVAKQAL--------HEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLAR 279
Q I GQ AK+A+ M + LR E+ TP + +L+ GP G GKT +AR
Sbjct: 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEV-----TP-KNILMIGPTGVGKTEIAR 68
Query: 280 AVATACNATFFSISAASLTS-KYVGQ 304
+A NA F + A T YVG+
Sbjct: 69 RLAKLANAPFIKVEATKFTEVGYVGK 94
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 230 IAGQEVAKQALHEMVILPSLRPELFTGLR---TPSRGLLLFGPPGNGKTMLARAVATACN 286
I GQ+ AK+++ + R +L LR TP + +L+ GP G GKT +AR +A N
Sbjct: 16 IIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTP-KNILMIGPTGVGKTEIARRLAKLAN 74
Query: 287 ATFFSISAASLTS-KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASR 345
A F + A T YVG + + ++ R+L + + + V ++ R E A
Sbjct: 75 APFIKVEATKFTEVGYVG------KEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEE 128
Query: 346 RL 347
R+
Sbjct: 129 RI 130
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 230 IAGQEVAKQALHEMVILPSLRPELFTGLR---TPSRGLLLFGPPGNGKTMLARAVATACN 286
I GQ+ AK+++ + R +L LR TP + +L+ GP G GKT +AR +A N
Sbjct: 23 IIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTP-KNILMIGPTGVGKTEIARRLAKLAN 81
Query: 287 ATFFSISAASLTS-KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASR 345
A F + A T YVG + + ++ R+L + + + V ++ R E A
Sbjct: 82 APFIKVEATKFTEVGYVG------KEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEE 135
Query: 346 RL 347
R+
Sbjct: 136 RI 137
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 230 IAGQEVAKQALHEMVILPSLRPELFTGLR---TPSRGLLLFGPPGNGKTMLARAVATACN 286
I GQ+ AK+++ + R +L LR TP + +L+ GP G GKT +AR +A N
Sbjct: 17 IIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTP-KNILMIGPTGVGKTEIARRLAKLAN 75
Query: 287 ATFFSISAASLTS-KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASR 345
A F + A T YVG + + ++ R+L + + + V ++ R E A
Sbjct: 76 APFIKVEATKFTEVGYVG------KEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELAEE 129
Query: 346 RL 347
R+
Sbjct: 130 RI 131
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLR---TPSRGLLLFGPPGNGKTMLARAVATA 284
Q I GQ AK+A+ + R +L LR TP + +L GP G GKT +AR +A
Sbjct: 15 QHIIGQADAKRAVAIALRNRWRRXQLQEPLRHEVTP-KNILXIGPTGVGKTEIARRLAKL 73
Query: 285 CNATFFSISAASLTS-KYVGQG-EKLVRALFAMAREL 319
NA F + A T YVG+ + ++R L A +L
Sbjct: 74 ANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAXKL 110
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 230 IAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT--ACNA 287
+ GQE A++A +V EL + R +LL GPPG GKT LA A+A
Sbjct: 53 LVGQENAREACGVIV-------ELIKSKKXAGRAVLLAGPPGTGKTALALAIAQELGSKV 105
Query: 288 TFFSISAASLTSKYVGQGEKLV----RALFAMARELQPSII 324
F + + S + + E L RA+ +E P II
Sbjct: 106 PFCPXVGSEVYSTEIKKTEVLXENFRRAIGLRIKEGPPGII 146
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 395 PDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNA 452
PD R ++ E + L++ + + +TEGYSGSD+ + KDA + PIR++ +
Sbjct: 3 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 60
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 230 IAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVA 282
+ GQE A++A +V EL + R +LL GPPG GKT LA A+A
Sbjct: 39 LVGQENAREACGVIV-------ELIKSKKMAGRAVLLAGPPGTGKTALALAIA 84
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 107/266 (40%), Gaps = 63/266 (23%)
Query: 169 AVNCYYGSGEKWERAQRLQEKMKNNLKMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQ 228
+N Y+G +Q L + + + +A ++LS S S++ V L+
Sbjct: 1197 TINTYFGHD-----SQELSDY--STIVIANDKLSFSSFCSEIPSVSLE------------ 1237
Query: 229 DIAGQEVAKQALHEMVILPSL----RPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATA 284
A + + +++P++ ++F L RG++L GPPG+GKTM+
Sbjct: 1238 -------AHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALR- 1289
Query: 285 CNATFFSI---------------SAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEV 329
N++ + + SA + YV + L +++ ++F DE+
Sbjct: 1290 -NSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT---LLPKSDIKNLVLFCDEI 1345
Query: 330 DSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEH------RLLVMGATNRPQELDEAVL 383
+ + K G L+ L+E G E+ R+ ++GA N P + +
Sbjct: 1346 N-LPKLDKYGSQNVVLFLRQ--LMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPM 1402
Query: 384 -RRFSKR---IYVTLPDSKTRKSLLE 405
RF++ +Y+ P K+ + E
Sbjct: 1403 SERFTRHAAILYLGYPSGKSLSQIYE 1428
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK---------YVGQGEKLVRALFA 314
L L GPPG GKT LA+++A + F IS + + YVG +
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 170
Query: 315 MARELQPSIIFIDEVDSVLSE 335
A +L P + +DE+D + S+
Sbjct: 171 KAGKLNP-VFLLDEIDKMSSD 190
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 107/266 (40%), Gaps = 63/266 (23%)
Query: 169 AVNCYYGSGEKWERAQRLQEKMKNNLKMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQ 228
+N Y+G +Q L + + + +A ++LS S S++ V L+
Sbjct: 978 TINTYFGHD-----SQELSDY--STIVIANDKLSFSSFCSEIPSVSLE------------ 1018
Query: 229 DIAGQEVAKQALHEMVILPSL----RPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATA 284
A + + +++P++ ++F L RG++L GPPG+GKTM+
Sbjct: 1019 -------AHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALR- 1070
Query: 285 CNATFFSI---------------SAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEV 329
N++ + + SA + YV + L +++ ++F DE+
Sbjct: 1071 -NSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT---LLPKSDIKNLVLFCDEI 1126
Query: 330 DSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEH------RLLVMGATNRPQELDEAVL 383
+ + K G L+ L+E G E+ R+ ++GA N P + +
Sbjct: 1127 N-LPKLDKYGSQNVVLFLRQ--LMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPM 1183
Query: 384 -RRFSKR---IYVTLPDSKTRKSLLE 405
RF++ +Y+ P K+ + E
Sbjct: 1184 SERFTRHAAILYLGYPSGKSLSQIYE 1209
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 200 RLSILSVDSKLAQVVLDEILEGGSPVQW-QDIAGQEVAKQALHEMVILPSLRPELFTGLR 258
R+ + S + + LD+ LE P Q Q + GQ A++A V+L +R G
Sbjct: 18 RIERIGAHSHIRGLGLDDALE---PRQASQGMVGQLAARRAAG--VVLEMIREGKIAG-- 70
Query: 259 TPSRGLLLFGPPGNGKTMLARAVATAC--NATFFSISAASLTSKYVGQGEKLVRAL 312
R +L+ G PG GKT +A +A A + F +I+ + + S + + E L +A
Sbjct: 71 ---RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAF 123
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 21/150 (14%)
Query: 200 RLSILSVDSKLAQVVLDEILEGGSPVQW-QDIAGQEVAKQALHEMVILPSLRPELFTGLR 258
R+ + S + + LD+ LE P Q Q GQ A++A V+L +R G
Sbjct: 33 RIERIGAHSHIRGLGLDDALE---PRQASQGXVGQLAARRAAG--VVLEXIREGKIAG-- 85
Query: 259 TPSRGLLLFGPPGNGKTMLARAVATAC--NATFFSISAASLTSKYVGQGEKLV----RAL 312
R +L+ G PG GKT +A A A + F +I+ + + S + E L R++
Sbjct: 86 ---RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRRSI 142
Query: 313 FAMARELQPSIIF---IDEVDSVLSERKEG 339
+E P ++ + E+D V++ R +G
Sbjct: 143 GVRIKEGPPGVVHTVSLHEID-VINSRTQG 171
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P + GQE K+ L + +R E+ + LL GPPG GKT LA +A+
Sbjct: 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV-------LLAGPPGLGKTTLAHIIAS 73
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEV 329
S L V QG+ + L ++ R ++FIDE+
Sbjct: 74 ELQTNIHVTSGPVL----VKQGD-MAAILTSLER---GDVLFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P + GQE K+ L + +R E+ + LL GPPG GKT LA +A+
Sbjct: 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV-------LLAGPPGLGKTTLAHIIAS 73
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEV 329
S L V QG+ + L ++ R ++FIDE+
Sbjct: 74 ELQTNIHVTSGPVL----VKQGD-MAAILTSLER---GDVLFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P + GQE K+ L + +R E+ + LL GPPG GKT LA +A+
Sbjct: 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV-------LLAGPPGLGKTTLAHIIAS 73
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEV 329
S L V QG+ + L ++ R ++FIDE+
Sbjct: 74 ELQTNIHVTSGPVL----VKQGD-MAAILTSLER---GDVLFIDEI 111
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 35/206 (16%)
Query: 264 LLLFGPPGNGKTMLARAVATACNA-----TFFSISAASLTSKYVGQGEKLVRALFAMARE 318
LL GPPG GKT A A+A F ++A+ +G +VR
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD------ERGIDVVRHKIKEFAR 94
Query: 319 LQP------SIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGAT 372
P IIF+DE D++ + + +A+ R E ++S S +L +
Sbjct: 95 TAPIGGAPFKIIFLDEADALTA-----DAQAALRRTME-------MYSKSCRFIL---SC 139
Query: 373 NRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSG 432
N + E + R + + +P +K LLE + K G +++ L+A+ ++ G
Sbjct: 140 NYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLE-ICEKEGVKITEDGLEALIYISGGDFR 198
Query: 433 SDLTNLAKDAALGPIRELNADQVIKV 458
+ L AA+G + ++AD + ++
Sbjct: 199 KAINALQGAAAIGEV--VDADTIYQI 222
>pdb|2Z4R|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|B Chain B, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|C Chain C, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4S|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
Length = 440
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 33/178 (18%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARE----- 318
L ++G G GKT L +++ + +TS EK + L +E
Sbjct: 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEGKLNE 186
Query: 319 ------LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGAT 372
+ I+ ID+V ++ K G ++TE F+ LH + + +V+ +
Sbjct: 187 FREKYRKKVDILLIDDVQFLIG--KTG-------VQTELFHTFNELHDSGKQ--IVICSD 235
Query: 373 NRPQELDE---AVLRRFSKRIYVTL--PDSKTRKSLLEKLLNKHGNPLSQLELDAVAK 425
PQ+L E ++ RF + L PD +TRKS+ K+L L + L+ VA+
Sbjct: 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAE 293
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P + GQE K+ L + +R E+ + LL GPPG GKT LA +A+
Sbjct: 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV-------LLAGPPGLGKTTLAHIIAS 73
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEV 329
S L V QG+ + L ++ R ++FIDE+
Sbjct: 74 ELQTNIHVTSGPVL----VKQGD-MAAILTSLER---GDVLFIDEI 111
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 244 VILPSLRPELFTGLRTPSR--GLLLFGP-PGNGKTMLARAVATACNATFFSISAASLTSK 300
ILP+ E F + + + ++L P PG GKT +A+A+ NA ++ +
Sbjct: 28 CILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKID 87
Query: 301 YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKT 349
+V +G L A + + + +I IDE D + G E+ R L++
Sbjct: 88 FV-RG-PLTNFASAASFDGRQKVIVIDEFD------RSGLAESQRHLRS 128
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P + GQE K+ L + +R E+ + LL GPPG GKT LA +A+
Sbjct: 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV-------LLAGPPGLGKTTLAHIIAS 73
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEV 329
S L V QG+ + L ++ R ++FIDE+
Sbjct: 74 ELQTNIHVTSGPVL----VKQGD-MAAILTSLER---GDVLFIDEI 111
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 35/206 (16%)
Query: 264 LLLFGPPGNGKTMLARAVATACNA-----TFFSISAASLTSKYVGQGEKLVRALFAMARE 318
LL GPPG GKT A A+A F ++A+ +G +VR
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD------ERGIDVVRHKIKEFAR 94
Query: 319 LQP------SIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGAT 372
P IIF+DE D++ + + +A+ R E ++S S +L +
Sbjct: 95 TAPIGGAPFKIIFLDEADALTA-----DAQAALRRTME-------MYSKSCRFIL---SC 139
Query: 373 NRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSG 432
N + E + R + + +P +K LLE + K G +++ L+A+ ++ G
Sbjct: 140 NYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLE-ICEKEGVKITEDGLEALIYISGGDFR 198
Query: 433 SDLTNLAKDAALGPIRELNADQVIKV 458
+ L AA+G + ++AD + ++
Sbjct: 199 KAINALQGAAAIGEV--VDADTIYQI 222
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 29/166 (17%)
Query: 262 RGLLLFGPPGNGKTM-LARAVATACNATFFSISAASLTS--------------KYVGQGE 306
R L+L GPPG+GKTM L + + S++ +S T+ K GE
Sbjct: 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGE 1364
Query: 307 KLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEH-- 364
++R + + L ++F DE++ + S K G ++ ++E G S+H
Sbjct: 1365 TVLRPT-QLGKWL---VVFCDEIN-LPSTDKYGTQRVITFIRQ--MVEKGGFWRTSDHTW 1417
Query: 365 ----RLLVMGATNRPQELDEAVL-RRFSKRIYVTLPDSKTRKSLLE 405
++ +GA N P + L RF + + L D + SL +
Sbjct: 1418 IKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQ 1463
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P + GQE K+ L + +R E+ + LL GPPG G+T LA +A+
Sbjct: 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV-------LLAGPPGLGRTTLAHIIAS 73
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEV 329
S L V QG+ + L ++ R ++FIDE+
Sbjct: 74 ELQTNIHVTSGPVL----VKQGD-MAAILTSLER---GDVLFIDEI 111
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 29/166 (17%)
Query: 262 RGLLLFGPPGNGKTM-LARAVATACNATFFSISAASLTS--------------KYVGQGE 306
R L+L GPPG+GKTM L + + S++ +S T+ K GE
Sbjct: 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGE 1364
Query: 307 KLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEH-- 364
++R + + L ++F DE++ + S K G ++ ++E G S+H
Sbjct: 1365 TVLRPT-QLGKWL---VVFCDEIN-LPSTDKYGTQRVITFIRQ--MVEKGGFWRTSDHTW 1417
Query: 365 ----RLLVMGATNRPQELDEAVL-RRFSKRIYVTLPDSKTRKSLLE 405
++ +GA N P + L RF + + L D + SL +
Sbjct: 1418 IKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQ 1463
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 27/149 (18%)
Query: 265 LLFGPPGNGKTMLARAVATAC----------NATFFSISAASLT--SKYVGQGEKLVRAL 312
+L G PG GKT + +A S+ +SL +KY G E+ ++++
Sbjct: 47 ILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSI 106
Query: 313 FAMARELQPSII-FIDEVDSVLSER--KEGEHEASRRLKTEFL---LEFDGLHSNSEHRL 366
++ + ++ FIDE+ +V+ EG +A LK L G + SE+R
Sbjct: 107 LKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSEYRQ 166
Query: 367 LVMGATNRPQELDEAVLRRFSKRIYVTLP 395
+ E D+A+ RRF ++I V P
Sbjct: 167 FI--------EKDKALERRF-QQILVEQP 186
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 256 GLRTPSR---GLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQGEKLV 309
GL+ P R + GP G GKT LARA+A + + I + K+ G +L
Sbjct: 513 GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLT 572
Query: 310 RALFAMARELQPSIIFIDEVD 330
+ R S++ +D ++
Sbjct: 573 EKV----RRKPYSVVLLDAIE 589
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 26/148 (17%)
Query: 265 LLFGPPGNGKTMLARAVATAC------------NATFFSISAASLTSKYVGQGEKLVRAL 312
+L G PG GKT + +A + A +KY G+ E+ ++ +
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 313 FA-MARELQPSIIFIDEVDSVLSERK-EGEHEASRRLKTEFL---LEFDGLHSNSEHRLL 367
+A++ I+FIDE+ +++ K +G +A LK L G + E+R
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQY 166
Query: 368 VMGATNRPQELDEAVLRRFSKRIYVTLP 395
+ E D A+ RRF K ++V P
Sbjct: 167 I--------EKDAALERRFQK-VFVAEP 185
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 264 LLLFGPPGNGKT----MLARAVATACNATFFSISAASLTSKYV---GQGEKLVRA-LFAM 315
+L+ G PG K+ ++R A T +AA LT+ V G GE + A +
Sbjct: 330 ILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVL 389
Query: 316 ARELQPSIIFIDEVDSVLSERKEGEHEA 343
A I IDE+D + E + HEA
Sbjct: 390 A---DGGIAVIDEIDKMRDEDRVAIHEA 414
>pdb|2WAA|A Chain A, Structure Of A Family Two Carbohydrate Esterase From
Cellvibrio Japonicus
Length = 347
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 116 TVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVA--IEFYKKGISEL 164
T+GDT A Q +HHR DLI A+ ++ + G D A I Y + + L
Sbjct: 209 TLGDTGQAPQWDHHRYQPDLIISAIGTNDFSPGIPDRATYINTYTRFVRTL 259
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300
R +L+GPPG GKT A VA +A+ + SK
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 262 RGLLLFGPPGNGKTMLARAVA 282
R +LL G PG GK+ML +A+A
Sbjct: 61 RHVLLIGEPGTGKSMLGQAMA 81
>pdb|2JQH|A Chain A, Vps4b Mit
pdb|2JQK|A Chain A, Vps4b Mit-Chmp2b Complex
Length = 89
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 17/81 (20%)
Query: 130 RKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNCYYGSGEK---------- 179
+KA DL SKA + E+ GN + A++ Y+ + + V Y G+K
Sbjct: 12 QKAIDLASKAAQ--EDKAGNYEEALQLYQHAVQYF---LHVVKYEAQGDKAKQSIRAKCT 66
Query: 180 --WERAQRLQEKMKNNLKMAK 198
+RA++L+E +KN K A+
Sbjct: 67 EYLDRAEKLKEYLKNKEKKAQ 87
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 255 TGLRTPSRGL---LLFGPPGNGKTMLARAVATACNATFFSISAASL 297
GL+ P+R + L GP G GKT LA+ +A AT F A +
Sbjct: 38 AGLKDPNRPIGSFLFLGPTGVGKTELAKTLA----ATLFDTEEAXI 79
>pdb|2CPT|A Chain A, Solution Structure Of Mit Domain From Human Skd1
Length = 117
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 17/81 (20%)
Query: 130 RKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNCYYGSGEK---------- 179
+KA DL SKA + E+ GN + A++ Y+ + + V Y G+K
Sbjct: 16 QKAIDLASKAAQ--EDKAGNYEEALQLYQHAVQYF---LHVVKYEAQGDKAKQSIRAKCT 70
Query: 180 --WERAQRLQEKMKNNLKMAK 198
+RA++L+E +KN K A+
Sbjct: 71 EYLDRAEKLKEYLKNKEKKAQ 91
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 14/65 (21%)
Query: 219 LEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLF-GPPGNGKTML 277
+E P + DI GQE + L V +T S LLF GPPG GKT
Sbjct: 16 VEKYRPQRLDDIVGQEHIVKRLKHYV-------------KTGSMPHLLFAGPPGVGKTTA 62
Query: 278 ARAVA 282
A A+A
Sbjct: 63 ALALA 67
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 243 MVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN-------ATFFSISAA 295
++++ R +L TP+ + G PG GKT +A +A + S++
Sbjct: 42 LLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 101
Query: 296 SLTSKYVGQGEKLVRALFAMARELQPSIIFIDEV 329
L +Y+G + + A ++FIDE
Sbjct: 102 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEA 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,972,208
Number of Sequences: 62578
Number of extensions: 493847
Number of successful extensions: 1844
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1657
Number of HSP's gapped (non-prelim): 134
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)