Query psy2637
Match_columns 502
No_of_seqs 463 out of 3661
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 21:15:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0739|consensus 100.0 8.5E-53 1.8E-57 401.7 26.4 370 128-500 6-438 (439)
2 KOG0738|consensus 100.0 5.6E-49 1.2E-53 387.6 26.7 294 206-500 190-491 (491)
3 COG1222 RPT1 ATP-dependent 26S 100.0 8.1E-45 1.8E-49 356.4 24.5 247 219-480 142-394 (406)
4 KOG0730|consensus 100.0 8.1E-44 1.8E-48 372.2 24.2 267 217-496 423-692 (693)
5 KOG0733|consensus 100.0 1.3E-42 2.7E-47 358.3 25.8 275 222-498 505-789 (802)
6 KOG0736|consensus 100.0 2.4E-41 5.1E-46 356.5 26.4 277 221-498 665-952 (953)
7 KOG0740|consensus 100.0 7.6E-41 1.6E-45 341.5 22.3 299 203-501 128-427 (428)
8 KOG0737|consensus 100.0 2.8E-39 6.1E-44 319.2 27.3 278 221-499 85-382 (386)
9 KOG0733|consensus 100.0 9.7E-39 2.1E-43 329.6 20.2 277 221-499 183-516 (802)
10 COG2204 AtoC Response regulato 100.0 4.4E-40 9.5E-45 340.7 2.9 300 111-473 56-386 (464)
11 TIGR01243 CDC48 AAA family ATP 100.0 8.3E-36 1.8E-40 334.0 28.5 278 221-501 446-733 (733)
12 KOG0734|consensus 100.0 7.1E-36 1.5E-40 304.2 20.1 239 223-477 299-540 (752)
13 KOG0727|consensus 100.0 3.4E-35 7.3E-40 275.5 20.5 246 220-480 147-398 (408)
14 COG1223 Predicted ATPase (AAA+ 100.0 4.9E-35 1.1E-39 275.6 19.8 241 222-480 115-357 (368)
15 KOG0728|consensus 100.0 1.1E-33 2.3E-38 265.2 27.5 253 219-486 138-396 (404)
16 COG0464 SpoVK ATPases of the A 100.0 2.5E-34 5.5E-39 309.2 24.8 256 219-493 233-492 (494)
17 PTZ00454 26S protease regulato 100.0 2E-33 4.2E-38 291.6 25.4 247 220-481 137-389 (398)
18 CHL00195 ycf46 Ycf46; Provisio 100.0 4E-33 8.6E-38 295.1 26.5 256 222-497 222-484 (489)
19 KOG0729|consensus 100.0 1.2E-33 2.6E-38 267.0 18.2 244 220-478 169-418 (435)
20 KOG0652|consensus 100.0 1.6E-33 3.4E-38 265.4 18.4 256 210-480 153-414 (424)
21 KOG0726|consensus 100.0 4.8E-34 1E-38 272.5 15.1 244 220-478 177-426 (440)
22 KOG0731|consensus 100.0 5.7E-33 1.2E-37 299.0 23.5 246 221-481 304-556 (774)
23 PRK03992 proteasome-activating 100.0 9.7E-33 2.1E-37 287.3 24.4 249 221-484 124-378 (389)
24 KOG0735|consensus 100.0 1.9E-32 4.2E-37 286.9 24.5 226 223-451 662-890 (952)
25 PTZ00361 26 proteosome regulat 100.0 8.4E-32 1.8E-36 281.1 22.4 246 219-479 174-425 (438)
26 TIGR01241 FtsH_fam ATP-depende 100.0 1.5E-30 3.2E-35 279.6 25.2 245 220-480 47-297 (495)
27 COG0465 HflB ATP-dependent Zn 100.0 1.3E-30 2.7E-35 276.7 20.1 241 222-478 144-390 (596)
28 TIGR01242 26Sp45 26S proteasom 100.0 6E-30 1.3E-34 264.9 24.3 244 220-478 114-363 (364)
29 TIGR03689 pup_AAA proteasome A 100.0 7.3E-29 1.6E-33 262.4 24.5 271 219-500 173-501 (512)
30 CHL00176 ftsH cell division pr 100.0 6.4E-29 1.4E-33 270.8 24.4 241 222-478 177-423 (638)
31 KOG0730|consensus 100.0 4.6E-29 9.9E-34 261.7 19.8 254 223-498 180-438 (693)
32 KOG0732|consensus 100.0 1.6E-28 3.4E-33 271.0 19.4 259 222-483 259-530 (1080)
33 TIGR01243 CDC48 AAA family ATP 100.0 5.4E-28 1.2E-32 271.1 24.1 259 222-483 172-440 (733)
34 KOG0651|consensus 100.0 9E-29 2E-33 238.7 13.0 247 218-479 122-374 (388)
35 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.2E-27 2.7E-32 273.7 21.2 202 259-478 1628-1877(2281)
36 PRK10733 hflB ATP-dependent me 100.0 7.4E-27 1.6E-31 257.1 24.4 242 224-481 148-395 (644)
37 COG3829 RocR Transcriptional r 99.9 1.8E-28 4E-33 253.7 7.7 227 222-477 239-497 (560)
38 KOG0741|consensus 99.9 1.7E-26 3.6E-31 235.7 14.2 268 222-491 213-505 (744)
39 PLN00020 ribulose bisphosphate 99.9 8.6E-25 1.9E-29 218.8 23.5 187 259-449 146-354 (413)
40 COG3604 FhlA Transcriptional r 99.9 5.2E-26 1.1E-30 232.5 6.4 217 224-471 219-465 (550)
41 TIGR02915 PEP_resp_reg putativ 99.9 8.5E-26 1.9E-30 240.1 2.8 296 112-472 49-383 (445)
42 PRK10923 glnG nitrogen regulat 99.9 6.4E-25 1.4E-29 235.0 4.0 297 112-476 56-386 (469)
43 PRK11361 acetoacetate metaboli 99.9 1.1E-24 2.5E-29 232.2 2.8 302 111-476 56-391 (457)
44 CHL00181 cbbX CbbX; Provisiona 99.9 5.7E-22 1.2E-26 198.1 20.3 235 228-472 23-280 (287)
45 PRK15115 response regulator Gl 99.9 1.6E-23 3.5E-28 222.6 6.6 291 112-476 58-382 (444)
46 TIGR02880 cbbX_cfxQ probable R 99.9 2E-21 4.2E-26 194.3 19.5 212 229-450 23-257 (284)
47 TIGR01818 ntrC nitrogen regula 99.9 4.9E-23 1.1E-27 220.0 8.5 298 112-476 51-382 (463)
48 PRK10365 transcriptional regul 99.9 5.9E-23 1.3E-27 218.0 7.4 297 111-476 57-387 (441)
49 TIGR02881 spore_V_K stage V sp 99.9 8.9E-21 1.9E-25 187.6 19.0 213 227-449 5-241 (261)
50 TIGR02974 phageshock_pspF psp 99.8 1.7E-21 3.6E-26 198.5 9.3 209 230-471 1-243 (329)
51 PF05496 RuvB_N: Holliday junc 99.8 3.4E-20 7.4E-25 175.0 16.8 194 222-442 18-225 (233)
52 TIGR02329 propionate_PrpR prop 99.8 1.6E-20 3.5E-25 201.4 13.7 217 225-474 209-466 (526)
53 COG1221 PspF Transcriptional r 99.8 2.3E-21 5E-26 198.2 5.6 213 225-471 75-319 (403)
54 KOG0742|consensus 99.8 4.3E-19 9.4E-24 177.0 20.2 209 224-441 351-587 (630)
55 PRK11608 pspF phage shock prot 99.8 4.3E-20 9.3E-25 188.2 13.0 213 226-471 4-250 (326)
56 PF00004 AAA: ATPase family as 99.8 1.6E-19 3.5E-24 158.7 14.3 130 264-394 1-132 (132)
57 PRK15424 propionate catabolism 99.8 7.9E-21 1.7E-25 203.6 6.9 215 225-472 216-479 (538)
58 PRK05022 anaerobic nitric oxid 99.8 8.5E-20 1.8E-24 196.9 13.6 216 226-474 185-439 (509)
59 COG3283 TyrR Transcriptional r 99.8 1.7E-20 3.8E-25 184.4 6.8 224 222-474 198-445 (511)
60 TIGR01817 nifA Nif-specific re 99.8 1.5E-19 3.3E-24 196.3 14.4 218 223-473 191-440 (534)
61 KOG0744|consensus 99.8 2.1E-19 4.5E-24 174.9 13.6 236 226-477 140-413 (423)
62 PRK10820 DNA-binding transcrip 99.8 4.1E-20 8.9E-25 199.5 9.4 217 222-471 198-447 (520)
63 PRK00080 ruvB Holliday junctio 99.8 9.4E-18 2E-22 171.5 25.5 227 221-479 18-251 (328)
64 PRK11388 DNA-binding transcrip 99.8 2.4E-19 5.2E-24 198.8 13.9 220 224-476 321-569 (638)
65 KOG0735|consensus 99.8 1.5E-18 3.3E-23 183.1 18.6 214 260-481 430-651 (952)
66 TIGR02902 spore_lonB ATP-depen 99.8 1.5E-18 3.2E-23 187.5 19.0 218 220-478 57-332 (531)
67 PRK15429 formate hydrogenlyase 99.8 7.7E-19 1.7E-23 196.1 17.4 212 225-469 373-617 (686)
68 COG0466 Lon ATP-dependent Lon 99.8 6.5E-18 1.4E-22 179.7 22.5 172 229-408 324-508 (782)
69 COG2255 RuvB Holliday junction 99.8 2.4E-18 5.2E-23 165.4 16.2 200 221-441 19-226 (332)
70 TIGR00635 ruvB Holliday juncti 99.8 1.3E-17 2.9E-22 168.5 22.4 201 226-446 2-209 (305)
71 TIGR00763 lon ATP-dependent pr 99.8 2.8E-17 6.1E-22 185.3 26.5 233 229-476 321-584 (775)
72 KOG0736|consensus 99.8 5E-18 1.1E-22 180.8 17.0 235 260-499 430-677 (953)
73 PRK12323 DNA polymerase III su 99.8 2.7E-17 5.8E-22 176.3 22.0 190 220-443 8-230 (700)
74 COG2256 MGS1 ATPase related to 99.8 2.4E-17 5.2E-22 165.6 20.1 180 222-438 18-213 (436)
75 PRK14956 DNA polymerase III su 99.8 5.8E-17 1.3E-21 169.9 23.8 186 220-438 10-223 (484)
76 TIGR02639 ClpA ATP-dependent C 99.8 4.4E-17 9.6E-22 182.8 24.0 237 213-479 167-430 (731)
77 PRK07003 DNA polymerase III su 99.8 6.9E-17 1.5E-21 175.2 23.5 186 220-438 8-221 (830)
78 KOG2004|consensus 99.7 3.3E-16 7.2E-21 165.9 24.8 215 228-450 411-653 (906)
79 PRK14962 DNA polymerase III su 99.7 1.1E-16 2.3E-21 170.0 21.4 187 220-439 6-220 (472)
80 KOG0989|consensus 99.7 2.1E-16 4.6E-21 153.5 21.1 195 218-443 26-236 (346)
81 PRK14960 DNA polymerase III su 99.7 3.7E-16 8.1E-21 168.0 23.5 190 220-443 7-224 (702)
82 PRK14949 DNA polymerase III su 99.7 5.3E-16 1.2E-20 171.3 24.5 196 220-443 8-225 (944)
83 PRK14958 DNA polymerase III su 99.7 3.4E-16 7.3E-21 167.8 22.1 190 220-443 8-225 (509)
84 PLN03025 replication factor C 99.7 8.7E-16 1.9E-20 156.4 23.1 187 219-439 4-202 (319)
85 PRK14961 DNA polymerase III su 99.7 4E-16 8.8E-21 161.5 20.7 196 220-443 8-225 (363)
86 PRK04195 replication factor C 99.7 3.7E-16 8E-21 167.7 19.9 195 218-440 4-205 (482)
87 PRK07994 DNA polymerase III su 99.7 1.6E-15 3.6E-20 165.0 24.9 188 221-442 9-224 (647)
88 PRK06645 DNA polymerase III su 99.7 1E-15 2.2E-20 163.3 21.8 195 221-443 14-234 (507)
89 COG0542 clpA ATP-binding subun 99.7 4.2E-15 9.1E-20 162.6 25.9 202 228-448 491-756 (786)
90 TIGR03345 VI_ClpV1 type VI sec 99.7 1.4E-15 3.1E-20 172.1 22.6 197 212-430 171-389 (852)
91 PRK14964 DNA polymerase III su 99.7 3.1E-15 6.6E-20 158.5 22.9 190 221-444 6-223 (491)
92 PRK13342 recombination factor 99.7 2.9E-15 6.3E-20 157.7 22.6 184 221-442 5-200 (413)
93 TIGR02903 spore_lon_C ATP-depe 99.7 1.1E-14 2.4E-19 159.8 27.8 231 219-479 145-431 (615)
94 PRK14951 DNA polymerase III su 99.7 3.6E-15 7.7E-20 162.0 23.0 190 220-443 8-230 (618)
95 KOG0743|consensus 99.7 8.4E-16 1.8E-20 156.9 16.7 203 224-437 197-411 (457)
96 PRK12402 replication factor C 99.7 3.6E-15 7.8E-20 152.6 21.7 184 219-430 6-219 (337)
97 PRK14959 DNA polymerase III su 99.7 2.4E-15 5.1E-20 162.5 21.1 187 220-439 8-222 (624)
98 PRK08691 DNA polymerase III su 99.7 4.9E-15 1.1E-19 160.7 23.4 196 220-443 8-225 (709)
99 PHA02544 44 clamp loader, smal 99.7 1.4E-15 3.1E-20 154.5 18.3 191 219-438 12-210 (316)
100 PRK11034 clpA ATP-dependent Cl 99.7 1.6E-15 3.5E-20 168.8 20.2 237 213-478 171-433 (758)
101 PRK14963 DNA polymerase III su 99.7 3E-15 6.5E-20 160.2 21.3 186 220-438 6-218 (504)
102 COG3284 AcoR Transcriptional a 99.7 1.8E-17 3.8E-22 175.3 3.9 215 232-481 317-560 (606)
103 KOG2028|consensus 99.7 1.7E-15 3.7E-20 149.7 17.3 212 222-479 132-369 (554)
104 PRK14957 DNA polymerase III su 99.7 6.7E-15 1.5E-19 158.0 22.2 188 220-441 8-223 (546)
105 PRK05342 clpX ATP-dependent pr 99.7 4.3E-15 9.3E-20 155.1 19.1 223 229-451 72-383 (412)
106 PRK11034 clpA ATP-dependent Cl 99.7 9.3E-15 2E-19 162.7 22.7 205 228-449 458-718 (758)
107 PRK14969 DNA polymerase III su 99.6 6.3E-15 1.4E-19 159.0 20.3 196 220-443 8-225 (527)
108 PRK14952 DNA polymerase III su 99.6 2.5E-14 5.5E-19 154.9 24.9 188 221-442 6-223 (584)
109 PRK00149 dnaA chromosomal repl 99.6 1.2E-14 2.6E-19 154.9 21.9 198 222-442 116-326 (450)
110 PRK05563 DNA polymerase III su 99.6 9.2E-15 2E-19 158.7 21.4 188 221-442 9-224 (559)
111 PRK07133 DNA polymerase III su 99.6 2.5E-14 5.4E-19 156.7 24.5 192 220-438 10-220 (725)
112 TIGR00362 DnaA chromosomal rep 99.6 2.1E-14 4.5E-19 151.1 23.0 197 223-443 105-315 (405)
113 PRK05896 DNA polymerase III su 99.6 1.5E-14 3.3E-19 155.5 22.2 186 220-438 8-221 (605)
114 PRK10865 protein disaggregatio 99.6 4E-15 8.8E-20 168.9 18.4 194 213-428 163-378 (857)
115 PRK10787 DNA-binding ATP-depen 99.6 3.1E-14 6.6E-19 159.7 24.5 228 229-477 323-581 (784)
116 PRK14965 DNA polymerase III su 99.6 2.4E-14 5.3E-19 156.1 22.9 184 220-436 8-219 (576)
117 TIGR02397 dnaX_nterm DNA polym 99.6 1.7E-14 3.6E-19 148.9 20.4 189 220-442 6-222 (355)
118 CHL00095 clpC Clp protease ATP 99.6 4.7E-15 1E-19 168.4 17.5 199 212-432 163-382 (821)
119 PRK07764 DNA polymerase III su 99.6 3.9E-14 8.4E-19 158.9 24.6 189 220-442 7-225 (824)
120 PRK00440 rfc replication facto 99.6 2.5E-14 5.4E-19 145.2 21.0 188 219-439 8-205 (319)
121 PRK08451 DNA polymerase III su 99.6 3.9E-14 8.4E-19 151.4 22.9 192 220-445 6-225 (535)
122 PRK06647 DNA polymerase III su 99.6 2.5E-14 5.3E-19 155.0 21.5 194 221-442 9-224 (563)
123 TIGR02928 orc1/cdc6 family rep 99.6 3.5E-14 7.6E-19 147.1 21.9 205 227-449 14-257 (365)
124 TIGR02639 ClpA ATP-dependent C 99.6 5.3E-14 1.1E-18 158.1 23.8 202 228-448 454-713 (731)
125 TIGR03345 VI_ClpV1 type VI sec 99.6 2.1E-13 4.5E-18 154.7 28.5 202 228-449 566-833 (852)
126 TIGR00390 hslU ATP-dependent p 99.6 8.4E-15 1.8E-19 150.4 15.6 176 229-404 13-342 (441)
127 COG2812 DnaX DNA polymerase II 99.6 1.3E-14 2.8E-19 153.3 17.3 197 221-445 9-227 (515)
128 TIGR03346 chaperone_ClpB ATP-d 99.6 1.7E-14 3.7E-19 164.3 19.4 196 213-430 158-375 (852)
129 PF00158 Sigma54_activat: Sigm 99.6 1.2E-15 2.5E-20 140.8 8.1 138 230-392 1-167 (168)
130 TIGR03346 chaperone_ClpB ATP-d 99.6 4E-13 8.6E-18 153.2 30.2 163 228-409 565-777 (852)
131 PRK13341 recombination factor 99.6 5.3E-14 1.2E-18 156.0 22.1 185 221-443 21-222 (725)
132 PF05673 DUF815: Protein of un 99.6 7.1E-14 1.5E-18 133.9 20.0 192 222-440 21-243 (249)
133 PRK00411 cdc6 cell division co 99.6 7.7E-14 1.7E-18 146.1 22.1 224 226-479 28-283 (394)
134 PRK06305 DNA polymerase III su 99.6 3.5E-14 7.6E-19 150.5 19.6 188 220-441 9-225 (451)
135 PRK14953 DNA polymerase III su 99.6 6.8E-14 1.5E-18 149.4 21.3 195 220-442 8-224 (486)
136 PRK05201 hslU ATP-dependent pr 99.6 1.2E-14 2.6E-19 149.3 14.7 176 229-404 16-344 (443)
137 PRK12422 chromosomal replicati 99.6 1.6E-13 3.5E-18 145.1 23.7 228 222-478 105-343 (445)
138 PRK07940 DNA polymerase III su 99.6 3.9E-14 8.4E-19 147.3 18.5 191 226-440 3-216 (394)
139 TIGR03420 DnaA_homol_Hda DnaA 99.6 8.6E-14 1.9E-18 134.4 19.7 184 224-442 11-205 (226)
140 PTZ00112 origin recognition co 99.6 6.8E-14 1.5E-18 152.7 20.5 219 228-481 755-1009(1164)
141 PRK14955 DNA polymerase III su 99.6 5.9E-14 1.3E-18 147.0 19.5 186 220-432 8-223 (397)
142 PRK06893 DNA replication initi 99.6 1E-13 2.2E-18 134.5 19.7 211 221-475 9-227 (229)
143 PRK09111 DNA polymerase III su 99.6 1E-13 2.3E-18 150.8 21.9 195 220-442 16-237 (598)
144 KOG0991|consensus 99.6 1.4E-14 2.9E-19 135.8 12.8 193 218-441 17-218 (333)
145 PRK14970 DNA polymerase III su 99.6 6.2E-14 1.4E-18 145.6 19.2 192 220-440 9-211 (367)
146 PRK14948 DNA polymerase III su 99.6 2.4E-13 5.3E-18 148.9 24.6 192 220-438 8-223 (620)
147 PRK08903 DnaA regulatory inact 99.6 1.7E-13 3.8E-18 132.6 20.7 203 222-476 12-224 (227)
148 TIGR00382 clpX endopeptidase C 99.6 6E-14 1.3E-18 145.9 18.0 222 229-450 78-388 (413)
149 CHL00095 clpC Clp protease ATP 99.6 9.5E-13 2.1E-17 149.6 28.9 203 228-449 509-784 (821)
150 PRK14088 dnaA chromosomal repl 99.6 1.8E-13 4E-18 144.8 20.8 197 222-441 99-308 (440)
151 PRK10865 protein disaggregatio 99.6 1.8E-12 4E-17 147.3 29.9 204 228-448 568-830 (857)
152 PRK08084 DNA replication initi 99.6 3.7E-13 8.1E-18 131.1 20.7 207 222-475 16-233 (235)
153 PRK14954 DNA polymerase III su 99.6 6.7E-13 1.5E-17 144.8 24.7 189 220-435 8-226 (620)
154 PRK14086 dnaA chromosomal repl 99.6 5.3E-13 1.1E-17 143.8 23.2 167 261-441 314-491 (617)
155 PRK13407 bchI magnesium chelat 99.5 9.4E-14 2E-18 141.1 15.9 160 223-408 3-216 (334)
156 COG0464 SpoVK ATPases of the A 99.5 1.5E-13 3.2E-18 148.3 18.4 221 250-481 6-229 (494)
157 PF00308 Bac_DnaA: Bacterial d 99.5 5.3E-13 1.1E-17 128.6 19.6 195 223-441 3-211 (219)
158 CHL00081 chlI Mg-protoporyphyr 99.5 2E-13 4.3E-18 139.1 17.1 160 223-408 12-232 (350)
159 PRK14950 DNA polymerase III su 99.5 9.7E-13 2.1E-17 144.2 23.6 193 220-440 8-223 (585)
160 PRK14087 dnaA chromosomal repl 99.5 1.3E-12 2.9E-17 138.5 23.4 173 261-447 141-328 (450)
161 TIGR02640 gas_vesic_GvpN gas v 99.5 3.4E-13 7.4E-18 133.5 17.7 135 261-408 21-198 (262)
162 COG1224 TIP49 DNA helicase TIP 99.5 2.4E-12 5.2E-17 127.5 22.6 145 320-495 291-447 (450)
163 PRK14971 DNA polymerase III su 99.5 1.2E-12 2.6E-17 143.4 20.1 183 221-436 10-221 (614)
164 TIGR02030 BchI-ChlI magnesium 99.5 8.1E-13 1.8E-17 134.6 17.4 156 226-407 2-218 (337)
165 PRK08727 hypothetical protein; 99.5 2.5E-12 5.3E-17 125.2 20.1 180 262-477 42-230 (233)
166 TIGR02442 Cob-chelat-sub cobal 99.5 5.7E-13 1.2E-17 147.2 17.3 158 226-409 2-215 (633)
167 PRK06620 hypothetical protein; 99.5 2.1E-12 4.5E-17 124.0 18.5 173 222-440 10-191 (214)
168 PRK05642 DNA replication initi 99.5 5E-12 1.1E-16 123.1 20.5 160 261-442 45-212 (234)
169 PRK04132 replication factor C 99.5 6.9E-12 1.5E-16 140.1 22.8 164 257-442 560-736 (846)
170 COG0593 DnaA ATPase involved i 99.4 1.2E-11 2.5E-16 127.6 21.2 166 260-439 112-287 (408)
171 COG2607 Predicted ATPase (AAA+ 99.4 1.4E-11 3E-16 116.4 19.4 193 222-441 54-276 (287)
172 COG1474 CDC6 Cdc6-related prot 99.4 8.3E-12 1.8E-16 128.7 19.4 222 228-481 17-268 (366)
173 PHA02244 ATPase-like protein 99.4 5.7E-12 1.2E-16 127.9 16.0 128 259-399 117-265 (383)
174 PRK09087 hypothetical protein; 99.4 2.5E-11 5.4E-16 117.5 18.6 174 261-478 44-222 (226)
175 TIGR01650 PD_CobS cobaltochela 99.4 5.4E-12 1.2E-16 126.8 14.1 139 261-408 64-233 (327)
176 COG0542 clpA ATP-binding subun 99.4 7E-12 1.5E-16 137.5 15.9 196 214-430 156-372 (786)
177 TIGR00368 Mg chelatase-related 99.4 1E-11 2.2E-16 132.8 16.6 146 225-398 189-394 (499)
178 PF01078 Mg_chelatase: Magnesi 99.4 4.1E-13 8.8E-18 126.2 5.0 121 226-374 1-158 (206)
179 cd00009 AAA The AAA+ (ATPases 99.4 1.4E-11 3.1E-16 108.7 14.8 139 232-393 2-150 (151)
180 PRK09112 DNA polymerase III su 99.4 3.5E-11 7.7E-16 123.6 18.8 188 222-438 17-241 (351)
181 PRK05564 DNA polymerase III su 99.4 3.7E-11 7.9E-16 122.2 18.4 176 226-436 2-189 (313)
182 COG1220 HslU ATP-dependent pro 99.3 3.8E-11 8.2E-16 118.3 17.1 210 229-446 16-385 (444)
183 PF14532 Sigma54_activ_2: Sigm 99.3 1.4E-12 3E-17 116.5 6.3 128 231-397 1-138 (138)
184 TIGR02031 BchD-ChlD magnesium 99.3 1.2E-11 2.7E-16 135.2 15.1 203 261-477 16-257 (589)
185 PF06068 TIP49: TIP49 C-termin 99.3 5.1E-11 1.1E-15 120.0 18.1 91 321-428 279-381 (398)
186 PRK07471 DNA polymerase III su 99.3 2E-10 4.4E-15 118.6 22.5 186 222-438 13-239 (365)
187 KOG1969|consensus 99.3 4.1E-11 8.8E-16 128.1 17.4 210 217-438 260-511 (877)
188 smart00350 MCM minichromosome 99.3 2.6E-11 5.6E-16 131.0 16.1 165 229-409 204-401 (509)
189 COG4650 RtcR Sigma54-dependent 99.3 5.4E-12 1.2E-16 122.1 7.5 201 260-477 207-442 (531)
190 TIGR03015 pepcterm_ATPase puta 99.3 7.4E-10 1.6E-14 109.7 23.1 194 261-479 43-267 (269)
191 KOG2035|consensus 99.3 2.1E-10 4.5E-15 110.5 17.1 190 219-436 4-227 (351)
192 COG0470 HolB ATPase involved i 99.3 6.1E-11 1.3E-15 120.5 14.5 148 229-404 2-177 (325)
193 TIGR00678 holB DNA polymerase 99.3 1.5E-10 3.2E-15 108.9 15.2 144 261-431 14-185 (188)
194 PF07724 AAA_2: AAA domain (Cd 99.2 1.9E-11 4E-16 113.2 8.6 114 260-375 2-130 (171)
195 COG1219 ClpX ATP-dependent pro 99.2 8.4E-11 1.8E-15 115.2 13.1 128 229-358 62-203 (408)
196 COG0714 MoxR-like ATPases [Gen 99.2 2.9E-11 6.2E-16 123.8 10.5 154 229-407 25-202 (329)
197 PRK07399 DNA polymerase III su 99.2 2.8E-10 6E-15 115.4 16.4 182 226-438 2-222 (314)
198 TIGR00764 lon_rel lon-related 99.2 6.8E-11 1.5E-15 129.7 12.3 51 223-287 13-63 (608)
199 PF07728 AAA_5: AAA domain (dy 99.2 4.4E-11 9.5E-16 106.6 8.8 112 263-386 1-139 (139)
200 PTZ00111 DNA replication licen 99.2 4.8E-10 1E-14 125.0 18.8 165 229-408 451-657 (915)
201 PRK13531 regulatory ATPase Rav 99.2 3.1E-10 6.7E-15 119.2 16.4 174 229-428 21-220 (498)
202 PRK09862 putative ATP-dependen 99.2 3.7E-10 8E-15 120.5 16.9 146 225-398 188-391 (506)
203 COG1239 ChlI Mg-chelatase subu 99.2 1.2E-10 2.5E-15 118.9 12.0 159 226-410 15-234 (423)
204 COG0606 Predicted ATPase with 99.2 6.7E-11 1.5E-15 122.3 9.9 47 225-285 176-222 (490)
205 KOG0745|consensus 99.2 4.3E-10 9.4E-15 114.1 14.9 191 260-450 225-512 (564)
206 PRK08058 DNA polymerase III su 99.2 1.2E-09 2.6E-14 111.7 17.2 153 226-405 3-179 (329)
207 PRK11331 5-methylcytosine-spec 99.1 5.8E-10 1.3E-14 116.3 14.6 143 227-394 174-357 (459)
208 smart00382 AAA ATPases associa 99.1 2.3E-10 4.9E-15 100.0 9.9 128 261-395 2-147 (148)
209 PRK05707 DNA polymerase III su 99.1 1.2E-09 2.5E-14 111.5 16.2 157 259-435 20-201 (328)
210 KOG0990|consensus 99.1 5E-10 1.1E-14 110.0 12.8 192 218-440 31-235 (360)
211 KOG1942|consensus 99.1 5.9E-09 1.3E-13 101.2 19.2 130 320-478 296-438 (456)
212 TIGR00602 rad24 checkpoint pro 99.1 2E-09 4.4E-14 117.7 17.1 202 218-441 74-327 (637)
213 PRK13765 ATP-dependent proteas 99.1 9.8E-10 2.1E-14 120.4 13.2 50 222-285 25-74 (637)
214 PF05621 TniB: Bacterial TniB 99.0 1.5E-08 3.3E-13 100.4 18.1 213 229-472 35-283 (302)
215 PRK06871 DNA polymerase III su 99.0 1.2E-08 2.6E-13 103.5 17.6 171 234-436 8-202 (325)
216 PF07726 AAA_3: ATPase family 99.0 4E-10 8.7E-15 97.8 4.5 113 263-386 1-129 (131)
217 PRK07993 DNA polymerase III su 99.0 1.6E-08 3.5E-13 103.3 16.9 157 260-437 23-204 (334)
218 smart00763 AAA_PrkA PrkA AAA d 99.0 9.2E-09 2E-13 104.7 14.7 62 227-294 49-118 (361)
219 KOG2680|consensus 99.0 5E-08 1.1E-12 95.1 18.9 132 320-480 288-431 (454)
220 PF13177 DNA_pol3_delta2: DNA 99.0 7.1E-09 1.5E-13 95.2 12.2 134 232-395 1-161 (162)
221 KOG1514|consensus 98.9 2.4E-08 5.3E-13 107.1 17.2 245 228-497 396-674 (767)
222 PRK08769 DNA polymerase III su 98.9 3.1E-08 6.7E-13 100.4 17.3 173 233-438 9-209 (319)
223 PRK13406 bchD magnesium chelat 98.9 1.2E-08 2.5E-13 111.2 15.1 189 262-476 26-248 (584)
224 KOG1051|consensus 98.9 4.6E-08 9.9E-13 109.3 18.6 128 228-374 562-710 (898)
225 KOG2227|consensus 98.9 7E-08 1.5E-12 99.4 18.2 236 228-484 150-421 (529)
226 PRK08116 hypothetical protein; 98.9 2.4E-08 5.2E-13 99.2 13.0 123 261-397 114-251 (268)
227 PLN03210 Resistant to P. syrin 98.9 9.3E-08 2E-12 113.2 20.2 222 181-432 134-390 (1153)
228 KOG0741|consensus 98.9 5.1E-08 1.1E-12 101.4 15.4 145 259-405 536-683 (744)
229 PRK12377 putative replication 98.9 4.6E-08 9.9E-13 95.8 14.3 98 223-332 69-175 (248)
230 PRK07952 DNA replication prote 98.8 1.8E-07 3.8E-12 91.4 17.5 69 262-332 100-174 (244)
231 PRK06090 DNA polymerase III su 98.8 1.8E-07 3.9E-12 94.7 17.9 166 233-436 8-200 (319)
232 PRK06964 DNA polymerase III su 98.8 3.6E-08 7.9E-13 100.7 12.2 131 260-406 20-202 (342)
233 COG1241 MCM2 Predicted ATPase 98.7 2.4E-08 5.3E-13 109.1 8.5 175 229-410 287-485 (682)
234 PF01637 Arch_ATPase: Archaeal 98.7 9.6E-08 2.1E-12 91.7 11.5 182 231-432 2-229 (234)
235 PF03215 Rad17: Rad17 cell cyc 98.7 5.3E-07 1.1E-11 97.1 17.4 206 218-443 9-269 (519)
236 PRK08181 transposase; Validate 98.7 1.2E-07 2.5E-12 94.0 10.3 71 261-333 106-180 (269)
237 PRK06835 DNA replication prote 98.6 1.7E-07 3.6E-12 95.6 11.3 71 260-332 182-258 (329)
238 PRK08699 DNA polymerase III su 98.6 2.4E-07 5.2E-12 94.4 12.1 130 260-405 20-182 (325)
239 KOG1970|consensus 98.6 2.3E-06 5.1E-11 89.9 19.0 203 222-441 76-319 (634)
240 KOG0478|consensus 98.6 3.8E-07 8.2E-12 97.6 12.4 176 229-408 430-626 (804)
241 PF13173 AAA_14: AAA domain 98.6 1.8E-07 4E-12 82.2 8.5 118 262-399 3-126 (128)
242 KOG0480|consensus 98.6 2.5E-07 5.4E-12 98.2 10.3 178 227-410 344-544 (764)
243 PF12775 AAA_7: P-loop contain 98.6 1.5E-07 3.3E-12 93.6 8.0 138 261-411 33-196 (272)
244 COG4566 TtrR Response regulato 98.5 3.9E-08 8.4E-13 90.0 2.6 54 111-171 56-110 (202)
245 PRK05917 DNA polymerase III su 98.5 3.5E-06 7.5E-11 84.0 15.0 119 261-395 19-154 (290)
246 PRK06526 transposase; Provisio 98.5 3.2E-07 6.9E-12 90.3 7.0 72 260-333 97-172 (254)
247 PF13401 AAA_22: AAA domain; P 98.4 1E-06 2.2E-11 77.1 9.4 73 261-333 4-100 (131)
248 COG5271 MDN1 AAA ATPase contai 98.4 3.8E-07 8.3E-12 104.3 8.0 146 261-409 1543-1704(4600)
249 PF00493 MCM: MCM2/3/5 family 98.4 3.9E-08 8.5E-13 100.6 -0.3 166 229-410 25-223 (331)
250 COG1484 DnaC DNA replication p 98.4 1.4E-06 2.9E-11 85.9 10.1 71 260-332 104-179 (254)
251 PF01695 IstB_IS21: IstB-like 98.4 3E-07 6.5E-12 85.7 4.8 71 260-332 46-120 (178)
252 KOG2228|consensus 98.4 5.4E-06 1.2E-10 82.5 13.5 163 228-409 24-220 (408)
253 PRK09183 transposase/IS protei 98.4 1.1E-06 2.3E-11 87.0 8.4 72 260-332 101-176 (259)
254 PRK08939 primosomal protein Dn 98.4 1.8E-06 3.9E-11 87.3 10.1 71 260-332 155-229 (306)
255 PF00931 NB-ARC: NB-ARC domain 98.4 7.7E-06 1.7E-10 81.6 14.6 176 234-440 2-204 (287)
256 KOG2170|consensus 98.4 9.3E-06 2E-10 79.8 14.4 187 229-428 83-320 (344)
257 KOG0482|consensus 98.3 1.4E-06 3E-11 90.4 8.8 242 229-478 343-638 (721)
258 PF12774 AAA_6: Hydrolytic ATP 98.3 7.2E-06 1.6E-10 79.5 12.6 131 262-404 33-176 (231)
259 PRK06921 hypothetical protein; 98.3 1.7E-06 3.6E-11 85.9 8.4 68 261-331 117-188 (266)
260 PRK07132 DNA polymerase III su 98.3 3.5E-05 7.5E-10 77.6 16.8 142 261-429 18-177 (299)
261 KOG0477|consensus 98.3 5.7E-07 1.2E-11 95.2 3.8 158 229-393 450-630 (854)
262 PF05729 NACHT: NACHT domain 98.2 1.2E-05 2.5E-10 72.9 11.8 139 263-409 2-164 (166)
263 PRK07276 DNA polymerase III su 98.2 8.4E-05 1.8E-09 74.3 17.5 169 233-439 7-198 (290)
264 PRK05818 DNA polymerase III su 98.2 3.8E-05 8.3E-10 75.1 13.7 121 259-395 5-147 (261)
265 COG3267 ExeA Type II secretory 98.1 0.00019 4.1E-09 69.4 17.7 179 261-450 51-257 (269)
266 KOG1968|consensus 98.1 1.2E-05 2.6E-10 90.8 9.3 202 222-437 314-531 (871)
267 cd01120 RecA-like_NTPases RecA 98.0 2.4E-05 5.2E-10 70.4 8.6 72 264-335 2-100 (165)
268 KOG0481|consensus 98.0 6.4E-05 1.4E-09 78.5 12.4 166 229-400 332-519 (729)
269 KOG1051|consensus 98.0 5.5E-05 1.2E-09 85.1 12.8 162 227-410 185-365 (898)
270 PF03969 AFG1_ATPase: AFG1-lik 98.0 3.3E-05 7.1E-10 79.9 10.2 126 259-400 60-207 (362)
271 cd02679 MIT_spastin MIT: domai 98.0 3.7E-05 8E-10 61.3 8.2 75 125-201 1-76 (79)
272 PHA00729 NTP-binding motif con 98.0 2E-05 4.4E-10 75.6 8.0 25 262-286 18-42 (226)
273 PF09336 Vps4_C: Vps4 C termin 98.0 7.8E-06 1.7E-10 62.2 3.9 35 464-498 28-62 (62)
274 COG1618 Predicted nucleotide k 98.0 0.0002 4.2E-09 64.6 13.2 25 261-285 5-29 (179)
275 KOG2543|consensus 97.9 0.00023 5E-09 72.3 14.9 196 229-449 7-237 (438)
276 COG5271 MDN1 AAA ATPase contai 97.9 5.5E-05 1.2E-09 87.5 11.5 138 259-409 886-1048(4600)
277 TIGR02237 recomb_radB DNA repa 97.9 5.7E-05 1.2E-09 72.0 9.7 76 259-334 10-111 (209)
278 PRK00771 signal recognition pa 97.9 0.0022 4.7E-08 68.0 22.2 37 259-295 93-132 (437)
279 PF14516 AAA_35: AAA-like doma 97.9 0.0023 5E-08 65.6 21.8 187 230-443 13-244 (331)
280 PRK12723 flagellar biosynthesi 97.9 0.00094 2E-08 69.7 19.0 141 261-414 174-341 (388)
281 TIGR01618 phage_P_loop phage n 97.9 3E-05 6.5E-10 74.5 6.9 25 259-283 10-34 (220)
282 PF00910 RNA_helicase: RNA hel 97.9 5E-05 1.1E-09 64.6 7.4 23 264-286 1-23 (107)
283 cd01124 KaiC KaiC is a circadi 97.8 0.00022 4.9E-09 66.3 11.2 31 264-294 2-35 (187)
284 PF13191 AAA_16: AAA ATPase do 97.8 8.9E-05 1.9E-09 68.6 8.4 59 230-297 2-63 (185)
285 PF13207 AAA_17: AAA domain; P 97.7 2.9E-05 6.2E-10 67.0 3.7 30 264-293 2-31 (121)
286 PF03266 NTPase_1: NTPase; In 97.7 3.9E-05 8.4E-10 70.8 4.4 23 263-285 1-23 (168)
287 COG1373 Predicted ATPase (AAA+ 97.7 0.0013 2.8E-08 69.2 16.1 122 263-403 39-162 (398)
288 PRK14974 cell division protein 97.7 0.0012 2.7E-08 67.5 15.5 36 260-295 139-177 (336)
289 PF06309 Torsin: Torsin; Inte 97.7 0.00022 4.8E-09 62.0 8.5 50 229-285 26-77 (127)
290 COG4565 CitB Response regulato 97.7 4E-06 8.7E-11 78.4 -2.6 52 113-171 56-108 (224)
291 TIGR02688 conserved hypothetic 97.7 0.00044 9.5E-09 72.0 12.0 63 260-333 208-273 (449)
292 PRK14722 flhF flagellar biosyn 97.6 0.0012 2.6E-08 68.4 15.0 140 260-413 136-309 (374)
293 PHA02624 large T antigen; Prov 97.6 0.00028 6.2E-09 76.2 10.3 120 261-394 431-561 (647)
294 PRK11889 flhF flagellar biosyn 97.6 0.0015 3.3E-08 67.6 15.1 128 199-332 185-332 (436)
295 PRK15455 PrkA family serine pr 97.6 8.9E-05 1.9E-09 79.7 6.1 63 226-294 74-137 (644)
296 PRK08118 topology modulation p 97.6 0.00016 3.4E-09 66.7 6.6 33 262-294 2-34 (167)
297 PRK12724 flagellar biosynthesi 97.6 0.0036 7.8E-08 65.6 17.0 204 199-414 162-388 (432)
298 PRK07261 topology modulation p 97.5 0.00019 4E-09 66.5 6.8 33 263-295 2-34 (171)
299 KOG0479|consensus 97.5 0.00034 7.4E-09 74.2 9.1 152 229-390 302-479 (818)
300 TIGR02012 tigrfam_recA protein 97.5 0.0005 1.1E-08 69.8 10.2 77 259-335 53-148 (321)
301 PF05707 Zot: Zonular occluden 97.5 0.0002 4.3E-09 67.6 6.6 123 264-395 3-146 (193)
302 PRK00131 aroK shikimate kinase 97.5 0.00012 2.6E-09 67.2 4.4 33 260-292 3-35 (175)
303 PRK04841 transcriptional regul 97.5 0.0026 5.5E-08 73.9 16.2 154 261-432 32-220 (903)
304 COG4753 Response regulator con 97.5 1.5E-05 3.2E-10 83.9 -2.1 63 100-171 47-110 (475)
305 PRK09361 radB DNA repair and r 97.4 0.00074 1.6E-08 65.1 9.8 37 259-295 21-60 (225)
306 COG4567 Response regulator con 97.4 1.4E-05 3E-10 70.6 -2.4 53 112-171 62-115 (182)
307 PRK11823 DNA repair protein Ra 97.4 0.001 2.2E-08 71.0 11.1 77 259-335 78-171 (446)
308 PRK08533 flagellar accessory p 97.4 0.00099 2.1E-08 64.7 10.1 75 259-333 22-130 (230)
309 cd00983 recA RecA is a bacter 97.4 0.00079 1.7E-08 68.4 9.6 76 260-335 54-148 (325)
310 cd01121 Sms Sms (bacterial rad 97.4 0.0008 1.7E-08 69.9 9.9 77 259-335 80-173 (372)
311 TIGR00064 ftsY signal recognit 97.4 0.01 2.2E-07 59.2 17.3 36 260-295 71-109 (272)
312 COG3854 SpoIIIAA ncharacterize 97.4 0.00046 1E-08 65.7 7.2 73 260-332 136-230 (308)
313 PRK12726 flagellar biosynthesi 97.4 0.0096 2.1E-07 61.6 17.2 80 201-285 151-230 (407)
314 PF13671 AAA_33: AAA domain; P 97.4 0.00056 1.2E-08 60.6 7.3 33 264-298 2-34 (143)
315 PRK06581 DNA polymerase III su 97.4 0.031 6.8E-07 54.1 19.5 147 261-426 15-176 (263)
316 COG4619 ABC-type uncharacteriz 97.4 0.0012 2.7E-08 60.0 9.2 27 259-285 27-53 (223)
317 PRK05703 flhF flagellar biosyn 97.4 0.0084 1.8E-07 63.5 17.2 89 199-296 168-261 (424)
318 KOG3347|consensus 97.4 0.00017 3.6E-09 64.1 3.6 32 261-292 7-38 (176)
319 COG1485 Predicted ATPase [Gene 97.3 0.0027 5.8E-08 64.3 11.7 34 253-286 57-90 (367)
320 PRK10867 signal recognition pa 97.3 0.056 1.2E-06 57.3 22.1 73 260-332 99-195 (433)
321 PRK13947 shikimate kinase; Pro 97.3 0.00027 5.8E-09 65.0 4.1 31 263-293 3-33 (171)
322 PRK03839 putative kinase; Prov 97.3 0.00024 5.2E-09 66.0 3.8 31 263-293 2-32 (180)
323 cd01131 PilT Pilus retraction 97.3 0.0005 1.1E-08 65.2 6.0 68 263-330 3-84 (198)
324 TIGR00959 ffh signal recogniti 97.3 0.059 1.3E-06 57.1 22.0 73 260-332 98-194 (428)
325 PF07693 KAP_NTPase: KAP famil 97.2 0.015 3.3E-07 59.0 17.2 28 259-286 18-45 (325)
326 PRK00625 shikimate kinase; Pro 97.2 0.00028 6.1E-09 65.4 3.9 31 263-293 2-32 (173)
327 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0011 2.4E-08 65.8 8.3 93 225-330 57-159 (264)
328 PRK10536 hypothetical protein; 97.2 0.0031 6.8E-08 61.8 11.2 44 227-284 54-97 (262)
329 PRK10416 signal recognition pa 97.2 0.023 5E-07 57.9 17.8 26 260-285 113-138 (318)
330 PRK13695 putative NTPase; Prov 97.2 0.0056 1.2E-07 56.6 12.1 23 263-285 2-24 (174)
331 cd00464 SK Shikimate kinase (S 97.2 0.00036 7.8E-09 62.7 4.0 31 263-293 1-31 (154)
332 TIGR03499 FlhF flagellar biosy 97.2 0.011 2.5E-07 59.2 15.2 36 260-295 193-233 (282)
333 PRK04296 thymidine kinase; Pro 97.2 0.0037 7.9E-08 58.9 10.8 31 262-292 3-36 (190)
334 PRK06762 hypothetical protein; 97.2 0.0013 2.8E-08 60.2 7.5 37 262-298 3-39 (166)
335 PRK05800 cobU adenosylcobinami 97.2 0.0032 7E-08 58.2 10.1 34 263-296 3-36 (170)
336 PF00437 T2SE: Type II/IV secr 97.1 0.00051 1.1E-08 68.2 5.1 97 224-330 100-207 (270)
337 cd00046 DEXDc DEAD-like helica 97.1 0.0018 4E-08 55.8 8.0 23 263-285 2-24 (144)
338 cd00227 CPT Chloramphenicol (C 97.1 0.00041 8.8E-09 64.3 3.9 36 261-296 2-37 (175)
339 PF13604 AAA_30: AAA domain; P 97.1 0.001 2.2E-08 63.0 6.6 34 261-294 18-54 (196)
340 PRK05973 replicative DNA helic 97.1 0.0049 1.1E-07 60.0 11.2 37 259-295 62-101 (237)
341 PRK13900 type IV secretion sys 97.1 0.0015 3.2E-08 67.0 7.9 70 261-330 160-245 (332)
342 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00049 1.1E-08 64.0 4.0 34 264-299 2-35 (183)
343 PRK06217 hypothetical protein; 97.1 0.0005 1.1E-08 64.2 4.1 31 263-293 3-33 (183)
344 PRK13949 shikimate kinase; Pro 97.1 0.00049 1.1E-08 63.6 3.9 32 262-293 2-33 (169)
345 PRK14532 adenylate kinase; Pro 97.1 0.00051 1.1E-08 64.3 3.9 36 263-300 2-37 (188)
346 COG2804 PulE Type II secretory 97.1 0.0016 3.4E-08 68.9 7.8 95 224-331 234-338 (500)
347 PF00448 SRP54: SRP54-type pro 97.0 0.0067 1.5E-07 57.4 11.2 25 261-285 1-25 (196)
348 cd02020 CMPK Cytidine monophos 97.0 0.00059 1.3E-08 60.7 3.8 30 264-293 2-31 (147)
349 COG0563 Adk Adenylate kinase a 97.0 0.00072 1.6E-08 63.0 4.5 34 263-298 2-35 (178)
350 PRK13948 shikimate kinase; Pro 97.0 0.00077 1.7E-08 63.0 4.6 35 259-293 8-42 (182)
351 PHA02774 E1; Provisional 97.0 0.0031 6.8E-08 68.1 9.7 34 261-294 434-468 (613)
352 cd02021 GntK Gluconate kinase 97.0 0.00063 1.4E-08 61.1 3.8 28 264-291 2-29 (150)
353 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0051 1.1E-07 59.9 10.3 36 259-294 19-57 (237)
354 cd01393 recA_like RecA is a b 97.0 0.0046 1E-07 59.4 9.9 38 259-296 17-63 (226)
355 PRK14530 adenylate kinase; Pro 97.0 0.00071 1.5E-08 64.9 4.2 31 262-292 4-34 (215)
356 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0043 9.2E-08 60.1 9.5 38 259-296 17-63 (235)
357 cd01394 radB RadB. The archaea 97.0 0.0045 9.7E-08 59.3 9.5 35 260-294 18-55 (218)
358 PRK06067 flagellar accessory p 96.9 0.0027 5.9E-08 61.6 8.0 36 259-294 23-61 (234)
359 PRK09354 recA recombinase A; P 96.9 0.0039 8.5E-08 63.9 9.4 75 260-334 59-152 (349)
360 cd01128 rho_factor Transcripti 96.9 0.0025 5.5E-08 62.6 7.8 28 260-287 15-42 (249)
361 TIGR01420 pilT_fam pilus retra 96.9 0.0014 3E-08 67.7 6.2 70 261-330 122-205 (343)
362 TIGR02525 plasmid_TraJ plasmid 96.9 0.0013 2.7E-08 68.3 5.9 70 261-330 149-235 (372)
363 COG0703 AroK Shikimate kinase 96.9 0.00075 1.6E-08 62.0 3.7 32 262-293 3-34 (172)
364 TIGR01313 therm_gnt_kin carboh 96.9 0.00072 1.6E-08 61.7 3.6 27 264-290 1-27 (163)
365 cd01428 ADK Adenylate kinase ( 96.9 0.00079 1.7E-08 63.0 4.0 28 264-291 2-29 (194)
366 COG1102 Cmk Cytidylate kinase 96.9 0.00073 1.6E-08 61.0 3.5 28 264-291 3-30 (179)
367 PRK14531 adenylate kinase; Pro 96.9 0.00085 1.8E-08 62.7 4.1 35 262-298 3-37 (183)
368 COG4178 ABC-type uncharacteriz 96.9 0.0039 8.5E-08 67.8 9.7 27 259-285 417-443 (604)
369 cd03283 ABC_MutS-like MutS-lik 96.9 0.007 1.5E-07 57.4 10.4 24 261-284 25-48 (199)
370 PRK09376 rho transcription ter 96.9 0.0017 3.7E-08 67.2 6.5 26 261-286 169-194 (416)
371 cd01130 VirB11-like_ATPase Typ 96.9 0.0018 3.8E-08 60.7 6.1 71 260-330 24-110 (186)
372 PRK06547 hypothetical protein; 96.9 0.00097 2.1E-08 61.8 4.2 34 260-293 14-47 (172)
373 TIGR02858 spore_III_AA stage I 96.9 0.0013 2.8E-08 65.4 5.3 69 262-330 112-204 (270)
374 COG5245 DYN1 Dynein, heavy cha 96.9 0.0045 9.7E-08 72.1 9.7 139 259-410 1492-1660(3164)
375 PF10443 RNA12: RNA12 protein; 96.9 0.047 1E-06 57.1 16.5 49 236-298 4-54 (431)
376 cd00544 CobU Adenosylcobinamid 96.9 0.0077 1.7E-07 55.6 9.8 71 264-337 2-90 (169)
377 PF04665 Pox_A32: Poxvirus A32 96.9 0.016 3.5E-07 56.4 12.3 129 260-404 12-166 (241)
378 PRK03731 aroL shikimate kinase 96.9 0.0011 2.4E-08 60.9 4.2 32 262-293 3-34 (171)
379 PF08303 tRNA_lig_kinase: tRNA 96.9 0.041 9E-07 50.1 14.1 130 267-412 5-147 (168)
380 COG4088 Predicted nucleotide k 96.8 0.0056 1.2E-07 57.5 8.6 24 263-286 3-26 (261)
381 TIGR00416 sms DNA repair prote 96.8 0.0068 1.5E-07 64.8 10.5 76 259-334 92-184 (454)
382 cd00984 DnaB_C DnaB helicase C 96.8 0.0064 1.4E-07 59.1 9.6 35 260-294 12-50 (242)
383 PRK05057 aroK shikimate kinase 96.8 0.0012 2.7E-08 61.0 4.3 34 261-294 4-37 (172)
384 TIGR02782 TrbB_P P-type conjug 96.8 0.003 6.4E-08 63.9 7.4 70 261-330 132-214 (299)
385 PF05272 VirE: Virulence-assoc 96.8 0.001 2.2E-08 63.1 3.7 113 261-394 52-169 (198)
386 PRK13946 shikimate kinase; Pro 96.8 0.0011 2.4E-08 62.0 4.0 33 261-293 10-42 (184)
387 COG1936 Predicted nucleotide k 96.8 0.00089 1.9E-08 61.1 3.1 30 263-293 2-31 (180)
388 PF13238 AAA_18: AAA domain; P 96.8 0.00087 1.9E-08 57.9 3.0 22 264-285 1-22 (129)
389 cd03216 ABC_Carb_Monos_I This 96.8 0.012 2.7E-07 53.8 10.8 72 259-330 24-110 (163)
390 PF13479 AAA_24: AAA domain 96.8 0.0043 9.3E-08 59.5 8.0 21 261-281 3-23 (213)
391 TIGR01613 primase_Cterm phage/ 96.8 0.01 2.2E-07 60.1 11.2 135 234-394 55-203 (304)
392 PF06745 KaiC: KaiC; InterPro 96.8 0.007 1.5E-07 58.4 9.3 74 259-332 17-127 (226)
393 PTZ00088 adenylate kinase 1; P 96.8 0.0014 3E-08 63.6 4.4 31 262-292 7-37 (229)
394 PRK10436 hypothetical protein; 96.8 0.0043 9.3E-08 66.3 8.4 93 225-330 195-297 (462)
395 PRK13833 conjugal transfer pro 96.8 0.0043 9.2E-08 63.2 7.9 70 261-330 144-225 (323)
396 TIGR03574 selen_PSTK L-seryl-t 96.8 0.0041 8.8E-08 61.1 7.6 34 264-297 2-38 (249)
397 PLN02674 adenylate kinase 96.8 0.0015 3.3E-08 63.8 4.5 37 261-299 31-67 (244)
398 PRK14528 adenylate kinase; Pro 96.7 0.0015 3.2E-08 61.3 4.0 30 262-291 2-31 (186)
399 TIGR02533 type_II_gspE general 96.7 0.0045 9.8E-08 66.7 8.2 93 225-330 219-321 (486)
400 PF09848 DUF2075: Uncharacteri 96.7 0.0037 8.1E-08 64.6 7.4 23 263-285 3-25 (352)
401 CHL00195 ycf46 Ycf46; Provisio 96.7 0.066 1.4E-06 57.8 17.0 109 321-443 82-190 (489)
402 cd03281 ABC_MSH5_euk MutS5 hom 96.7 0.017 3.7E-07 55.4 11.3 22 262-283 30-51 (213)
403 COG1066 Sms Predicted ATP-depe 96.7 0.01 2.2E-07 61.2 10.1 78 259-336 91-184 (456)
404 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0016 3.4E-08 60.6 4.0 34 262-297 4-37 (188)
405 PRK13894 conjugal transfer ATP 96.7 0.0051 1.1E-07 62.7 7.9 70 261-330 148-229 (319)
406 TIGR01448 recD_rel helicase, p 96.7 0.0067 1.5E-07 68.6 9.6 25 261-285 338-362 (720)
407 PRK13764 ATPase; Provisional 96.7 0.002 4.3E-08 70.6 5.2 71 260-331 256-335 (602)
408 PTZ00202 tuzin; Provisional 96.7 0.1 2.2E-06 55.0 17.3 60 226-295 260-320 (550)
409 PRK06696 uridine kinase; Valid 96.7 0.0036 7.9E-08 60.4 6.5 38 260-297 21-61 (223)
410 TIGR01425 SRP54_euk signal rec 96.7 0.081 1.8E-06 55.9 16.9 36 260-295 99-137 (429)
411 PRK12727 flagellar biosynthesi 96.7 0.19 4.2E-06 54.3 19.8 26 260-285 349-374 (559)
412 cd01122 GP4d_helicase GP4d_hel 96.7 0.012 2.5E-07 58.4 10.2 35 260-294 29-67 (271)
413 PF13245 AAA_19: Part of AAA d 96.7 0.0025 5.4E-08 50.7 4.3 24 262-285 11-35 (76)
414 cd03243 ABC_MutS_homologs The 96.7 0.014 2.9E-07 55.4 10.2 23 261-283 29-51 (202)
415 PRK13851 type IV secretion sys 96.7 0.0026 5.6E-08 65.4 5.5 71 260-330 161-246 (344)
416 cd02027 APSK Adenosine 5'-phos 96.7 0.0065 1.4E-07 54.8 7.5 34 264-297 2-38 (149)
417 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.0087 1.9E-07 53.6 8.3 70 259-330 24-98 (144)
418 PRK14721 flhF flagellar biosyn 96.6 0.058 1.3E-06 56.9 15.6 26 260-285 190-215 (420)
419 COG2805 PilT Tfp pilus assembl 96.6 0.0031 6.7E-08 62.5 5.7 72 261-332 125-210 (353)
420 PRK04328 hypothetical protein; 96.6 0.025 5.3E-07 55.6 12.1 36 259-294 21-59 (249)
421 PF13086 AAA_11: AAA domain; P 96.6 0.0024 5.3E-08 60.9 4.9 23 263-285 19-41 (236)
422 PRK02496 adk adenylate kinase; 96.6 0.0017 3.7E-08 60.5 3.7 29 263-291 3-31 (184)
423 TIGR03878 thermo_KaiC_2 KaiC d 96.6 0.01 2.3E-07 58.6 9.4 36 259-294 34-72 (259)
424 PLN02200 adenylate kinase fami 96.6 0.0021 4.5E-08 62.6 4.4 37 261-299 43-79 (234)
425 TIGR01351 adk adenylate kinase 96.6 0.0018 4E-08 61.8 3.9 33 264-298 2-34 (210)
426 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0075 1.6E-07 56.1 7.8 70 260-330 24-99 (177)
427 smart00487 DEXDc DEAD-like hel 96.6 0.02 4.3E-07 52.5 10.7 24 262-285 25-49 (201)
428 PRK00279 adk adenylate kinase; 96.6 0.002 4.4E-08 61.7 4.0 29 263-291 2-30 (215)
429 TIGR02788 VirB11 P-type DNA tr 96.6 0.0034 7.3E-08 63.8 5.8 71 260-330 143-228 (308)
430 PRK04040 adenylate kinase; Pro 96.6 0.0021 4.6E-08 60.4 4.0 29 261-289 2-32 (188)
431 PF01583 APS_kinase: Adenylyls 96.6 0.0037 7.9E-08 56.8 5.2 39 261-299 2-43 (156)
432 TIGR00767 rho transcription te 96.6 0.007 1.5E-07 63.0 7.9 26 260-285 167-192 (415)
433 cd03228 ABCC_MRP_Like The MRP 96.6 0.019 4.1E-07 52.9 10.1 27 259-285 26-52 (171)
434 PRK06731 flhF flagellar biosyn 96.5 0.041 8.9E-07 54.7 13.0 26 260-285 74-99 (270)
435 PRK14527 adenylate kinase; Pro 96.5 0.0022 4.7E-08 60.3 3.8 30 261-290 6-35 (191)
436 smart00534 MUTSac ATPase domai 96.5 0.026 5.5E-07 52.8 10.8 20 264-283 2-21 (185)
437 cd03247 ABCC_cytochrome_bd The 96.5 0.021 4.5E-07 53.0 10.1 27 259-285 26-52 (178)
438 TIGR02538 type_IV_pilB type IV 96.5 0.0075 1.6E-07 66.3 8.2 93 226-331 294-396 (564)
439 COG4608 AppF ABC-type oligopep 96.5 0.012 2.6E-07 57.8 8.6 27 259-285 37-63 (268)
440 cd02019 NK Nucleoside/nucleoti 96.5 0.0025 5.5E-08 49.5 3.2 22 264-285 2-23 (69)
441 PF00406 ADK: Adenylate kinase 96.5 0.0043 9.2E-08 55.9 5.2 34 266-301 1-34 (151)
442 cd03115 SRP The signal recogni 96.5 0.0092 2E-07 54.9 7.5 32 264-295 3-37 (173)
443 COG0552 FtsY Signal recognitio 96.5 0.18 3.9E-06 51.0 17.0 148 260-414 138-313 (340)
444 PRK06995 flhF flagellar biosyn 96.5 0.17 3.6E-06 54.4 17.9 25 261-285 256-280 (484)
445 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0058 1.3E-07 54.0 5.7 29 259-287 20-48 (133)
446 PF06414 Zeta_toxin: Zeta toxi 96.5 0.01 2.2E-07 56.2 7.9 41 260-300 14-55 (199)
447 PRK04182 cytidylate kinase; Pr 96.5 0.0028 6E-08 58.4 3.9 29 263-291 2-30 (180)
448 PHA02530 pseT polynucleotide k 96.5 0.0079 1.7E-07 60.5 7.5 35 262-297 3-37 (300)
449 KOG2383|consensus 96.4 0.036 7.8E-07 57.1 11.9 27 259-285 112-138 (467)
450 cd00267 ABC_ATPase ABC (ATP-bi 96.4 0.017 3.8E-07 52.2 9.0 27 259-285 23-49 (157)
451 cd03280 ABC_MutS2 MutS2 homolo 96.4 0.032 6.9E-07 52.8 11.0 21 262-282 29-49 (200)
452 PF05970 PIF1: PIF1-like helic 96.4 0.018 3.9E-07 59.9 10.2 27 260-286 21-47 (364)
453 TIGR02238 recomb_DMC1 meiotic 96.4 0.039 8.4E-07 56.1 12.2 38 259-296 94-140 (313)
454 TIGR02173 cyt_kin_arch cytidyl 96.4 0.003 6.6E-08 57.7 3.9 29 263-291 2-30 (171)
455 PF12780 AAA_8: P-loop contain 96.4 0.021 4.6E-07 56.7 10.0 90 229-330 9-99 (268)
456 PRK08154 anaerobic benzoate ca 96.4 0.0054 1.2E-07 62.3 6.0 35 259-293 131-165 (309)
457 PRK08233 hypothetical protein; 96.4 0.0035 7.5E-08 57.9 4.2 33 262-294 4-37 (182)
458 TIGR01526 nadR_NMN_Atrans nico 96.4 0.008 1.7E-07 61.5 7.2 35 261-295 162-196 (325)
459 TIGR03880 KaiC_arch_3 KaiC dom 96.4 0.04 8.7E-07 53.0 11.7 37 259-295 14-53 (224)
460 cd03238 ABC_UvrA The excision 96.4 0.028 6E-07 52.3 10.1 26 259-284 19-44 (176)
461 PRK14730 coaE dephospho-CoA ki 96.4 0.014 3E-07 55.2 8.2 36 263-300 3-38 (195)
462 PF13521 AAA_28: AAA domain; P 96.4 0.0028 6.1E-08 57.8 3.3 26 264-290 2-27 (163)
463 PRK14526 adenylate kinase; Pro 96.3 0.004 8.6E-08 59.7 4.3 33 263-297 2-34 (211)
464 PRK01184 hypothetical protein; 96.3 0.0034 7.4E-08 58.5 3.8 29 263-292 3-31 (184)
465 PRK10263 DNA translocase FtsK; 96.3 0.03 6.6E-07 65.5 12.0 75 322-406 1142-1218(1355)
466 PRK09519 recA DNA recombinatio 96.3 0.02 4.4E-07 64.4 10.4 76 259-334 58-152 (790)
467 COG1126 GlnQ ABC-type polar am 96.3 0.02 4.3E-07 54.4 8.6 24 260-283 27-50 (240)
468 KOG3928|consensus 96.3 0.15 3.2E-06 52.8 15.5 115 321-440 316-458 (461)
469 cd02681 MIT_calpain7_1 MIT: do 96.3 0.011 2.4E-07 46.9 5.9 40 130-171 4-43 (76)
470 PF08433 KTI12: Chromatin asso 96.3 0.012 2.6E-07 58.5 7.6 68 264-332 4-82 (270)
471 PF10236 DAP3: Mitochondrial r 96.3 0.23 5.1E-06 50.4 17.0 127 309-436 142-307 (309)
472 COG2274 SunT ABC-type bacterio 96.3 0.03 6.5E-07 63.0 11.4 27 259-285 497-523 (709)
473 PF01745 IPT: Isopentenyl tran 96.3 0.0041 8.9E-08 58.9 3.8 36 263-298 3-38 (233)
474 cd03246 ABCC_Protease_Secretio 96.3 0.054 1.2E-06 49.9 11.3 27 259-285 26-52 (173)
475 PF13481 AAA_25: AAA domain; P 96.3 0.012 2.7E-07 54.9 7.1 26 260-285 31-56 (193)
476 PRK10875 recD exonuclease V su 96.3 0.027 5.9E-07 62.3 10.8 25 261-285 167-191 (615)
477 PF02562 PhoH: PhoH-like prote 96.2 0.0054 1.2E-07 58.3 4.6 24 262-285 20-43 (205)
478 PRK10078 ribose 1,5-bisphospho 96.2 0.004 8.7E-08 58.2 3.7 29 262-290 3-31 (186)
479 PF10662 PduV-EutP: Ethanolami 96.2 0.033 7.2E-07 49.7 9.3 23 262-284 2-24 (143)
480 cd03214 ABC_Iron-Siderophores_ 96.2 0.024 5.2E-07 52.7 8.8 27 259-285 23-49 (180)
481 COG0745 OmpR Response regulato 96.2 0.00017 3.6E-09 70.0 -5.9 53 112-171 52-106 (229)
482 PRK14529 adenylate kinase; Pro 96.2 0.0048 1E-07 59.6 4.0 28 263-290 2-29 (223)
483 KOG0060|consensus 96.2 0.02 4.4E-07 61.4 8.9 27 259-285 459-485 (659)
484 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.074 1.6E-06 48.5 11.5 23 263-285 4-26 (159)
485 PLN03187 meiotic recombination 96.2 0.086 1.9E-06 54.3 13.3 38 259-296 124-170 (344)
486 TIGR02655 circ_KaiC circadian 96.2 0.02 4.4E-07 61.8 9.2 76 259-334 261-367 (484)
487 COG0541 Ffh Signal recognition 96.2 2.1 4.6E-05 44.9 24.0 203 259-477 98-338 (451)
488 PLN02199 shikimate kinase 96.2 0.0053 1.1E-07 61.3 4.2 34 260-293 101-134 (303)
489 cd03282 ABC_MSH4_euk MutS4 hom 96.2 0.056 1.2E-06 51.5 11.1 22 262-283 30-51 (204)
490 cd03223 ABCD_peroxisomal_ALDP 96.2 0.054 1.2E-06 49.6 10.7 27 259-285 25-51 (166)
491 PRK13889 conjugal transfer rel 96.1 0.023 5E-07 65.9 9.9 102 262-378 363-476 (988)
492 TIGR02768 TraA_Ti Ti-type conj 96.1 0.025 5.4E-07 64.3 9.9 72 261-332 368-451 (744)
493 COG1124 DppF ABC-type dipeptid 96.1 0.021 4.6E-07 55.1 7.9 27 259-285 31-57 (252)
494 COG1116 TauB ABC-type nitrate/ 96.1 0.026 5.6E-07 54.8 8.5 26 260-285 28-53 (248)
495 PRK12608 transcription termina 96.1 0.016 3.5E-07 59.8 7.5 25 261-285 133-157 (380)
496 PRK05541 adenylylsulfate kinas 96.1 0.0051 1.1E-07 56.9 3.6 27 260-286 6-32 (176)
497 KOG0058|consensus 96.1 0.025 5.4E-07 62.2 9.3 27 259-285 492-518 (716)
498 TIGR02236 recomb_radA DNA repa 96.1 0.037 8.1E-07 56.1 10.1 37 260-296 94-139 (310)
499 COG1119 ModF ABC-type molybden 96.1 0.027 5.9E-07 54.5 8.3 27 259-285 55-81 (257)
500 PLN02165 adenylate isopentenyl 96.1 0.0063 1.4E-07 61.9 4.2 35 260-294 42-76 (334)
No 1
>KOG0739|consensus
Probab=100.00 E-value=8.5e-53 Score=401.75 Aligned_cols=370 Identities=41% Similarity=0.665 Sum_probs=325.2
Q ss_pred HHHHHHHHHHHHhhhchhccCCchHHHHHHHHHHHHHHHHhHhhh---------ccCChhHHHHHHHHHHHHHHHHHHHH
Q psy2637 128 HHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNC---------YYGSGEKWERAQRLQEKMKNNLKMAK 198 (502)
Q Consensus 128 ~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~d~l~k~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (502)
...+|++++.+|. ++|++++|++|+.+|+.|.+|+.-.++.+. ...+.+|++|+++++..+++....+.
T Consensus 6 ~l~kaI~lv~kA~--~eD~a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK~yL~~~~~~~~ 83 (439)
T KOG0739|consen 6 FLQKAIDLVKKAI--DEDNAKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLKAYLKEKEKGAG 83 (439)
T ss_pred HHHHHHHHHHHHh--hhcchhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 4567999999999 999999999999999999999987777762 23456788888888887765432211
Q ss_pred HHhhh--------------------hhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC
Q psy2637 199 ERLSI--------------------LSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR 258 (502)
Q Consensus 199 ~~~~~--------------------~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~ 258 (502)
..... .....++...+...++...|.+.|+|+.|++.++++|+++|.+|...|++|.+-+
T Consensus 84 k~~~~a~a~~~~~k~~ds~~eg~d~~pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR 163 (439)
T KOG0739|consen 84 KKGDEAVATVPKGKKKDSDGEGEDDEPEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKR 163 (439)
T ss_pred CCCccccCCCCCCCCCCccccccCCChhHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCC
Confidence 11000 0123456667778888899999999999999999999999999999999999999
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhccccc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE 338 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~ 338 (502)
.|.+++||+|||||||++||+++|.+.+..|+.|+.+++.++|.|+.++.+..+|++|+.++|+||||||||.+++.+..
T Consensus 164 ~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e 243 (439)
T KOG0739|consen 164 KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE 243 (439)
T ss_pred CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHH
Q psy2637 339 GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQL 418 (502)
Q Consensus 339 ~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~ 418 (502)
+..++.+|+..+||.+|+|...+. ..|+|++|||.||.||.+++|||.+.|+|++|+...|..+++.++......+++.
T Consensus 244 nEseasRRIKTEfLVQMqGVG~d~-~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~ 322 (439)
T KOG0739|consen 244 NESEASRRIKTEFLVQMQGVGNDN-DGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQ 322 (439)
T ss_pred CchHHHHHHHHHHHHhhhccccCC-CceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchh
Confidence 999999999999999999876654 5699999999999999999999999999999999999999999999988889999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhh----------hhh----ccc--------------------CCC
Q psy2637 419 ELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQV----------IKV----DLK--------------------SVR 464 (502)
Q Consensus 419 ~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~----------~~v----~~~--------------------~~~ 464 (502)
++..|++.++||+++||..+++.|.+..+|....... ..+ ..+ -.+
T Consensus 323 d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP 402 (439)
T KOG0739|consen 323 DFKELARKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEP 402 (439)
T ss_pred hHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCC
Confidence 9999999999999999999999999999998643211 000 000 135
Q ss_pred cccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q psy2637 465 NISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYGDV 500 (502)
Q Consensus 465 ~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g~~ 500 (502)
.||+.||..++...+|+++.+++.+.+++++.||..
T Consensus 403 ~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGqE 438 (439)
T KOG0739|consen 403 PVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQE 438 (439)
T ss_pred CccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhccC
Confidence 799999999999999999999999999999999975
No 2
>KOG0738|consensus
Probab=100.00 E-value=5.6e-49 Score=387.61 Aligned_cols=294 Identities=44% Similarity=0.754 Sum_probs=264.3
Q ss_pred hchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 206 VDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 206 ~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.+..+.+.+..+++..++.+.|+||.|++++++-|+++|.+|...|++|.++..|+++||++||||||||+||+|+|.++
T Consensus 190 ~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 190 YDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred chHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 44567777888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhccccc-ChhHHHHHHHHHHHHHhccCCCCCC-
Q psy2637 286 NATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE-GEHEASRRLKTEFLLEFDGLHSNSE- 363 (502)
Q Consensus 286 ~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~-~~~~~~~~~~~~ll~~l~g~~~~~~- 363 (502)
+..|+.|+.+.+.++|-|+.++.++-+|++|+.+.|++|||||||+|+..+.. +++++++|+..+||.+|+|......
T Consensus 270 ~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~ 349 (491)
T KOG0738|consen 270 GTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLEN 349 (491)
T ss_pred cCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccccc
Confidence 99999999999999999999999999999999999999999999999988864 6789999999999999998765543
Q ss_pred -CcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2637 364 -HRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDA 442 (502)
Q Consensus 364 -~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a 442 (502)
..|+|+|+||-||+||++++|||.+.|+|++|+.+.|..+|+..+..... .++.+++.++..++||||+||.++|++|
T Consensus 350 ~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~-~~~~~~~~lae~~eGySGaDI~nvCreA 428 (491)
T KOG0738|consen 350 SKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL-DDPVNLEDLAERSEGYSGADITNVCREA 428 (491)
T ss_pred ceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC-CCCccHHHHHHHhcCCChHHHHHHHHHH
Confidence 23889999999999999999999999999999999999999999876533 3567899999999999999999999999
Q ss_pred HhhhHHhhhhhhh----hhhcc-cCCCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q psy2637 443 ALGPIRELNADQV----IKVDL-KSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYGDV 500 (502)
Q Consensus 443 ~~~airel~~~~~----~~v~~-~~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g~~ 500 (502)
.+.++|+.-.-.. ..... +....++..||..|++.++|+++..++++|++|.++||+.
T Consensus 429 sm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS~ 491 (491)
T KOG0738|consen 429 SMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGSC 491 (491)
T ss_pred HHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcCC
Confidence 9999996532211 11111 1125799999999999999999999999999999999974
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-45 Score=356.43 Aligned_cols=247 Identities=40% Similarity=0.701 Sum_probs=228.0
Q ss_pred hcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccch
Q psy2637 219 LEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297 (502)
Q Consensus 219 ~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l 297 (502)
++..|.+++++|+|++++++++++.+.+|+.+|++|..++ .||++||||||||||||+||||+|++.++.|+.+.++++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 4467899999999999999999999999999999999998 789999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccCh---hHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCC
Q psy2637 298 TSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGE---HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR 374 (502)
Q Consensus 298 ~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~---~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~ 374 (502)
..+|+|+..+.++.+|+.|+.+.||||||||||++...+.... .....|.+.+||.+|+|+... .+|.||+|||+
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR 299 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNR 299 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCC
Confidence 9999999999999999999999999999999999998876543 334566777889999999764 57999999999
Q ss_pred CCCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhh
Q psy2637 375 PQELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNA 452 (502)
Q Consensus 375 ~~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~ 452 (502)
++.|||+++| ||++.|+|++|+.+.|.+|++.+.++.... .+.+++.+++.++|+||+||+++|.+|.+.|+|+-
T Consensus 300 ~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~-- 376 (406)
T COG1222 300 PDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEAGMFAIRER-- 376 (406)
T ss_pred ccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc--
Confidence 9999999999 999999999999999999999999987653 66899999999999999999999999999999986
Q ss_pred hhhhhhcccCCCcccHHHHHHHHHhhcC
Q psy2637 453 DQVIKVDLKSVRNISYRDFLESLKRIRR 480 (502)
Q Consensus 453 ~~~~~v~~~~~~~It~~d~~~al~~~~~ 480 (502)
...+|++||..|+.++..
T Consensus 377 ----------R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 377 ----------RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred ----------cCeecHHHHHHHHHHHHh
Confidence 467999999999988754
No 4
>KOG0730|consensus
Probab=100.00 E-value=8.1e-44 Score=372.17 Aligned_cols=267 Identities=38% Similarity=0.670 Sum_probs=249.9
Q ss_pred HHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeecc
Q psy2637 217 EILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAA 295 (502)
Q Consensus 217 ~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s 295 (502)
+.+...++++|+||+|++++|+++++.|.+|..+++.|.+++ .++++||||||||||||++||++|++++.+|+.+.+.
T Consensus 423 e~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgp 502 (693)
T KOG0730|consen 423 EILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGP 502 (693)
T ss_pred heeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCH
Confidence 334567899999999999999999999999999999999998 8899999999999999999999999999999999999
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 296 SLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 296 ~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
++.++|+|++++.++.+|+.|+...|+|||+||||++...++........|++++||.+|+|+... .+|+||||||+|
T Consensus 503 EL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~--k~V~ViAATNRp 580 (693)
T KOG0730|consen 503 ELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEAL--KNVLVIAATNRP 580 (693)
T ss_pred HHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccccc--CcEEEEeccCCh
Confidence 999999999999999999999999999999999999999998777788999999999999999776 459999999999
Q ss_pred CCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 376 QELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 376 ~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
+.||++++| ||++.|+|++|+.+.|.+|++.++++.... .+.+++.|++.|+||||+||..+|++|+..++++.-+
T Consensus 581 d~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~-~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~- 658 (693)
T KOG0730|consen 581 DMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFS-EDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE- 658 (693)
T ss_pred hhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCC-ccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc-
Confidence 999999999 999999999999999999999999987654 3479999999999999999999999999999998622
Q ss_pred hhhhhcccCCCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy2637 454 QVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRD 496 (502)
Q Consensus 454 ~~~~v~~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~ 496 (502)
...|+.+||.+|++.++++++..+++.|+.|.+.
T Consensus 659 ---------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 659 ---------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred ---------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 4679999999999999999999999999998764
No 5
>KOG0733|consensus
Probab=100.00 E-value=1.3e-42 Score=358.28 Aligned_cols=275 Identities=36% Similarity=0.645 Sum_probs=249.7
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~ 300 (502)
-|.++|+||+|+++++.++..+|.+|..+|++|+.++ ..+.+|||+||||||||++|+|+|++.+.+|+.|-+.++.++
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 4789999999999999999999999999999999987 568999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcH
Q psy2637 301 YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDE 380 (502)
Q Consensus 301 ~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~ 380 (502)
|+|+.++.++.+|..|+...|||||+||+|+|.+.+.........|+.++||.+|+|+....+ |.||||||+|+.+|+
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~g--V~viaATNRPDiIDp 662 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRG--VYVIAATNRPDIIDP 662 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccc--eEEEeecCCCcccch
Confidence 999999999999999999999999999999999999988889999999999999999977654 999999999999999
Q ss_pred HHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCC-CHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhhHHhhhhhhh
Q psy2637 381 AVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPL-SQLELDAVAKLTE--GYSGSDLTNLAKDAALGPIRELNADQV 455 (502)
Q Consensus 381 ~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l-~~~~l~~la~~t~--g~s~~dL~~L~~~a~~~airel~~~~~ 455 (502)
+++| ||++.+++++|+.++|.+|++.+.+..+.++ ++.+++.|+..+. ||||+||..||++|...++++.-..+.
T Consensus 663 AiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~ 742 (802)
T KOG0733|consen 663 AILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEID 742 (802)
T ss_pred hhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 9999 9999999999999999999999998655555 4679999998876 999999999999999999998644332
Q ss_pred hhh-cccC---CCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q psy2637 456 IKV-DLKS---VRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYG 498 (502)
Q Consensus 456 ~~v-~~~~---~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g 498 (502)
... .... ...+|+.||.+|++.++||+++.+-+.|...+..+|
T Consensus 743 ~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 743 SSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred ccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 211 1111 346889999999999999999999999998777666
No 6
>KOG0736|consensus
Probab=100.00 E-value=2.4e-41 Score=356.55 Aligned_cols=277 Identities=38% Similarity=0.603 Sum_probs=251.6
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~ 300 (502)
+-|.++|+||+|.+++|..|.+.+..|+.++++|..-..+..+||||||||||||++|||+|.++...|+.|.+.++.+.
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 45888999999999999999999999999999999777778999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhccccc--ChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCC
Q psy2637 301 YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE--GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQEL 378 (502)
Q Consensus 301 ~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~--~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l 378 (502)
|+|+.+++++.+|+.|+...|||||+||+|++.|+|+. +....+.|+..+++.+++|+......+|.||||||+|+.|
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLL 824 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLL 824 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcccc
Confidence 99999999999999999999999999999999999864 4566789999999999999998777789999999999999
Q ss_pred cHHHHc--cccceeeecCC-CHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhhHHhhhhhh
Q psy2637 379 DEAVLR--RFSKRIYVTLP-DSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTE-GYSGSDLTNLAKDAALGPIRELNADQ 454 (502)
Q Consensus 379 ~~~l~r--Rf~~~I~i~~P-~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~-g~s~~dL~~L~~~a~~~airel~~~~ 454 (502)
|++++| ||++.+++.++ +.+.+..+++.+-+++... .+.++.++|+.+. .+||+|+-.||..||+.|+++.-+.+
T Consensus 825 DpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-edVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~i 903 (953)
T KOG0736|consen 825 DPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-EDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDI 903 (953)
T ss_pred ChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-CCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999 99999999998 5666778888888887654 5688999999986 69999999999999999999887766
Q ss_pred hhhhc-----ccCCCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q psy2637 455 VIKVD-----LKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYG 498 (502)
Q Consensus 455 ~~~v~-----~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g 498 (502)
+..+. .+....|+++||.++.++..||++..++..|+--..+|-
T Consensus 904 e~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 904 ESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred hhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 65422 234467999999999999999999999999998887773
No 7
>KOG0740|consensus
Probab=100.00 E-value=7.6e-41 Score=341.48 Aligned_cols=299 Identities=58% Similarity=0.922 Sum_probs=282.5
Q ss_pred hhhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHH
Q psy2637 203 ILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVA 282 (502)
Q Consensus 203 ~~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia 282 (502)
...++......+.+++....+++.|+++.|.+.+++.+.+++++|..++++|.+++.+..++||.||||||||+|+++||
T Consensus 128 ~~~~~~~~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiA 207 (428)
T KOG0740|consen 128 VKEVDETLIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIA 207 (428)
T ss_pred hccccchhhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHH
Confidence 34566777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCC
Q psy2637 283 TACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNS 362 (502)
Q Consensus 283 ~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~ 362 (502)
.+++..|+.++++.+.++|+|+.++.++.+|..|+..+|+|+||||||.++..+.+..++...+++.+++..+++.....
T Consensus 208 sE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~ 287 (428)
T KOG0740|consen 208 TESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAP 287 (428)
T ss_pred hhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999998888
Q ss_pred CCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2637 363 EHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDA 442 (502)
Q Consensus 363 ~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a 442 (502)
.++|+||||||.||.+|++++|||..++++++|+.+.|..++..++.+.+..+.+.+++.+++.++||++.||..+|..|
T Consensus 288 ~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea 367 (428)
T KOG0740|consen 288 DDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEA 367 (428)
T ss_pred CCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HhhhHHhhhhh-hhhhhcccCCCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC
Q psy2637 443 ALGPIRELNAD-QVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYGDVS 501 (502)
Q Consensus 443 ~~~airel~~~-~~~~v~~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g~~~ 501 (502)
.++.++++... ..........+.++..||..+++.++++++...+++|++|...||...
T Consensus 368 ~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 368 AMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSSE 427 (428)
T ss_pred hcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhcccc
Confidence 99999988664 334455566789999999999999999999999999999999999864
No 8
>KOG0737|consensus
Probab=100.00 E-value=2.8e-39 Score=319.23 Aligned_cols=278 Identities=46% Similarity=0.788 Sum_probs=249.8
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcC--CCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGL--RTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~--~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
..-.++|+||.|.+.+++++++.|.+|.++|++|... -.++.+|||+||||||||++|+++|++.+.+|+.|..+.+.
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt 164 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLT 164 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccc
Confidence 3456789999999999999999999999999999743 47889999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCC
Q psy2637 299 SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQEL 378 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l 378 (502)
++|.|+.++.+..+|..|...+|++|||||+|.+...+..+++++...+.++|...++|+.+....+|+|+||||+|.++
T Consensus 165 ~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~Dl 244 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDL 244 (386)
T ss_pred hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccH
Confidence 99999999999999999999999999999999999999889999999999999999999999988889999999999999
Q ss_pred cHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhh----
Q psy2637 379 DEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQ---- 454 (502)
Q Consensus 379 ~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~---- 454 (502)
|+++.||++++++|++|+..+|.+|++.++...... ++.++..+|+.++||||.||.++|+.|...++|++-...
T Consensus 245 DeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~ 323 (386)
T KOG0737|consen 245 DEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLL 323 (386)
T ss_pred HHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccch
Confidence 999999999999999999999999999999877654 678999999999999999999999999999999974432
Q ss_pred -hhh-hc----------ccCCCcccHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHhCC
Q psy2637 455 -VIK-VD----------LKSVRNISYRDFLESLKRIRRSVS--PSSLIQYEAWNRDYGD 499 (502)
Q Consensus 455 -~~~-v~----------~~~~~~It~~d~~~al~~~~~s~~--~~~l~~~~~w~~~~g~ 499 (502)
... .. -+..+.++++||..++..+.+++. .....+.++|.+.||.
T Consensus 324 d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 324 DLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred hhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 111 00 112588999999999998777654 3457778899998874
No 9
>KOG0733|consensus
Probab=100.00 E-value=9.7e-39 Score=329.59 Aligned_cols=277 Identities=34% Similarity=0.575 Sum_probs=241.2
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
..+.++|.+|+|.+....+|.+++.. ..+|+.|..++ .|+++|||+||||||||+||++||.+++.||+.|++.++.+
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS 261 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS 261 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence 44567899999999999999999988 78899999887 78899999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCC--CCcEEEEEEcCCCCC
Q psy2637 300 KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNS--EHRLLVMGATNRPQE 377 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~--~~~v~vIaaTN~~~~ 377 (502)
.+.|++++.++.+|+.|....|||+||||||++.+++...+.++.+|+..+|+..|+++.... +.+|+||||||+|+.
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs 341 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS 341 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999876553 367999999999999
Q ss_pred CcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhh
Q psy2637 378 LDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQV 455 (502)
Q Consensus 378 l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~ 455 (502)
||++++| ||++.|.+..|+..+|.+|++.+++...... +.++..||+.|.||.|+||.+||..|..-+++++-+..+
T Consensus 342 lDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 342 LDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred cCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 9999999 9999999999999999999999999776653 678999999999999999999999999999988643211
Q ss_pred ----------h---------h--h----------c-------------------ccCCCcccHHHHHHHHHhhcCCCCHH
Q psy2637 456 ----------I---------K--V----------D-------------------LKSVRNISYRDFLESLKRIRRSVSPS 485 (502)
Q Consensus 456 ----------~---------~--v----------~-------------------~~~~~~It~~d~~~al~~~~~s~~~~ 485 (502)
. . + . ..+...|+++||.+|+..++|+...+
T Consensus 421 ~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakRE 500 (802)
T KOG0733|consen 421 SPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKRE 500 (802)
T ss_pred CccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcc
Confidence 0 0 0 0 01234688999999999999986544
Q ss_pred HHHHHH--HHHHHhCC
Q psy2637 486 SLIQYE--AWNRDYGD 499 (502)
Q Consensus 486 ~l~~~~--~w~~~~g~ 499 (502)
-+.-.. .|.+.+|.
T Consensus 501 GF~tVPdVtW~dIGaL 516 (802)
T KOG0733|consen 501 GFATVPDVTWDDIGAL 516 (802)
T ss_pred cceecCCCChhhcccH
Confidence 443333 46665553
No 10
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-40 Score=340.69 Aligned_cols=300 Identities=22% Similarity=0.298 Sum_probs=232.6
Q ss_pred cccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhhhccCChhHHHHHHHHHHH
Q psy2637 111 VEMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVNCYYGSGEKWERAQRLQEK 189 (502)
Q Consensus 111 ~~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~~~~~~~~~~~~~~~~~~~ 189 (502)
.-||+++|+++|+++++.+|+.++|++||+ +++++||++|+.|| ||+.|||+.+. +....+++.+.++.
T Consensus 56 i~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~-------g~i~~AV~A~k~GA~Dfl~KP~~~~~---L~~~v~ral~~~~~ 125 (464)
T COG2204 56 IRMPGMDGLELLKEIKSRDPDLPVIVMTGH-------GDIDTAVEALRLGAFDFLEKPFDLDR---LLAIVERALELREL 125 (464)
T ss_pred cCCCCCchHHHHHHHHhhCCCCCEEEEeCC-------CCHHHHHHHHhcCcceeeeCCCCHHH---HHHHHHHHHHHhhh
Confidence 349999999999999999999999999999 99999999999999 99999999842 11222222211111
Q ss_pred HHHHHHHHHHHhhhhhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecC
Q psy2637 190 MKNNLKMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGP 269 (502)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~Gp 269 (502)
..++.. ..........+++|.+++|+++.+.+ .+++....+|||+|+
T Consensus 126 ~~e~~~-----------------------~~~~~~~~~~~liG~S~am~~l~~~i----------~kvA~s~a~VLI~GE 172 (464)
T COG2204 126 QRENRR-----------------------SLKRAKSLGGELVGESPAMQQLRRLI----------AKVAPSDASVLITGE 172 (464)
T ss_pred hhhhhh-----------------------hhhccccccCCceecCHHHHHHHHHH----------HHHhCCCCCEEEECC
Confidence 111000 00112234678999999999999998 778888999999999
Q ss_pred CCCcHHHHHHHHHHHc---cCceEEeeccchhhh-------------hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchh
Q psy2637 270 PGNGKTMLARAVATAC---NATFFSISAASLTSK-------------YVGQGEKLVRALFAMARELQPSIIFIDEVDSVL 333 (502)
Q Consensus 270 pGtGKT~lAraia~~~---~~~fv~i~~s~l~~~-------------~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~ 333 (502)
+||||.++|++||+.+ +.||+.+||+.++.. |.|+..+ ..+.|+.|.+ |+||||||..|
T Consensus 173 SGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~-r~G~fE~A~G---GTLfLDEI~~m- 247 (464)
T COG2204 173 SGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITR-RIGRFEQANG---GTLFLDEIGEM- 247 (464)
T ss_pred CCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccc-cCcceeEcCC---ceEEeeccccC-
Confidence 9999999999999988 579999999998754 2333333 2567888877 99999999877
Q ss_pred cccccChhHHHHHHHHHHHHHhc-------cCCCCCCCcEEEEEEcCCC--CC-----CcHHHHccccceeeecCCCHHH
Q psy2637 334 SERKEGEHEASRRLKTEFLLEFD-------GLHSNSEHRLLVMGATNRP--QE-----LDEAVLRRFSKRIYVTLPDSKT 399 (502)
Q Consensus 334 ~~~~~~~~~~~~~~~~~ll~~l~-------g~~~~~~~~v~vIaaTN~~--~~-----l~~~l~rRf~~~I~i~~P~~~e 399 (502)
...+|..|++.++ |.....+.+|+||+|||.. +. +-+.++-|++ ++.+..|+++|
T Consensus 248 ----------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLn-V~~i~iPpLRE 316 (464)
T COG2204 248 ----------PLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLN-VVPLRLPPLRE 316 (464)
T ss_pred ----------CHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhc-cceecCCcccc
Confidence 3445666666664 5555666889999999985 33 4445555996 99999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHH
Q psy2637 400 RKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLE 473 (502)
Q Consensus 400 r~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~ 473 (502)
|.+++..++..+-.. .-.+......+++++++..|+.|.||||+||+.|..++++.++....|+.+|+..
T Consensus 317 R~EDIp~L~~hfl~~----~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~~~i~~~~l~~ 386 (464)
T COG2204 317 RKEDIPLLAEHFLKR----FAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILSEGPEIEVEDLPL 386 (464)
T ss_pred cchhHHHHHHHHHHH----HHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCccccchhhccc
Confidence 999998887654211 1122333456899999999999999999999999999999999999999999774
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=8.3e-36 Score=334.02 Aligned_cols=278 Identities=36% Similarity=0.664 Sum_probs=243.4
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
..+.++|++++|++.+++.+.+.+.++..+++++..++ .++.++||+||||||||++|+++|++++.+|+.++++++.+
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 35677999999999999999999999999999998876 56789999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC-hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCC
Q psy2637 300 KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG-EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQEL 378 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~-~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l 378 (502)
+|+|+.+..++.+|..|+...|+||||||||.+++.+... ......++.++|+..++|.... .+++||+|||+++.+
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~--~~v~vI~aTn~~~~l 603 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL--SNVVVIAATNRPDIL 603 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC--CCEEEEEeCCChhhC
Confidence 9999999999999999999999999999999999877543 3345678899999999987654 469999999999999
Q ss_pred cHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhh
Q psy2637 379 DEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVI 456 (502)
Q Consensus 379 ~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~ 456 (502)
|++++| ||+..+++++|+.++|.+|++.+..+.... .+.++..+|..++||+++||..+|+.|...++++.......
T Consensus 604 d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~ 682 (733)
T TIGR01243 604 DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAK 682 (733)
T ss_pred CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999998 999999999999999999999887655432 45689999999999999999999999999999875322110
Q ss_pred h-h-----cccCCCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC
Q psy2637 457 K-V-----DLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYGDVS 501 (502)
Q Consensus 457 ~-v-----~~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g~~~ 501 (502)
. . .......|+.+||..|++.++|++++++++.|++|.+.||..|
T Consensus 683 ~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~~~ 733 (733)
T TIGR01243 683 EKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKRLT 733 (733)
T ss_pred hhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCC
Confidence 0 0 1112357999999999999999999999999999999999764
No 12
>KOG0734|consensus
Probab=100.00 E-value=7.1e-36 Score=304.18 Aligned_cols=239 Identities=37% Similarity=0.608 Sum_probs=215.2
Q ss_pred CCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhh
Q psy2637 223 SPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKY 301 (502)
Q Consensus 223 ~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~ 301 (502)
..++|+|+-|.++++++|.+.+.+. ..|.-|..++ .-|++|||+||||||||+|||++|.+.+.||+..+.+++..-|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVefL-kdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEFL-KDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHHHh-cCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 3668999999999999999987654 5566677775 5689999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHH
Q psy2637 302 VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEA 381 (502)
Q Consensus 302 ~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~ 381 (502)
+|...++++.+|..|+...||||||||||++.+++...........+++||.+|+|+..+. .|+||+|||.|+.||++
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNe--GiIvigATNfpe~LD~A 455 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNE--GIIVIGATNFPEALDKA 455 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCC--ceEEEeccCChhhhhHH
Confidence 9999999999999999999999999999999999988777788899999999999998775 49999999999999999
Q ss_pred HHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhc
Q psy2637 382 VLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVD 459 (502)
Q Consensus 382 l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~ 459 (502)
+.| ||+++|.++.|+.+-|.+|+..++.+... -.+.|+..||+-+.||+|+||.+|++.|+..+....
T Consensus 456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~-~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg--------- 525 (752)
T KOG0734|consen 456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPL-DEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG--------- 525 (752)
T ss_pred hcCCCccceeEecCCCCcccHHHHHHHHHhcCCc-ccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC---------
Confidence 999 99999999999999999999999987532 246789999999999999999999999998877654
Q ss_pred ccCCCcccHHHHHHHHHh
Q psy2637 460 LKSVRNISYRDFLESLKR 477 (502)
Q Consensus 460 ~~~~~~It~~d~~~al~~ 477 (502)
...+++.||..|-.+
T Consensus 526 ---a~~VtM~~LE~akDr 540 (752)
T KOG0734|consen 526 ---AEMVTMKHLEFAKDR 540 (752)
T ss_pred ---cccccHHHHhhhhhh
Confidence 356889999887654
No 13
>KOG0727|consensus
Probab=100.00 E-value=3.4e-35 Score=275.54 Aligned_cols=246 Identities=33% Similarity=0.628 Sum_probs=222.8
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
+..|.+++.|++|.+-.++++++++.+|+.+.+++.+++ .|+++||+|||||||||+||+++|+.....|++++++++.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 356788999999999999999999999999999999997 7889999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccCh---hHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 299 SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGE---HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~---~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
.+|.|+..+.++.+|..|+...|+||||||||++..++-..+ .....+++.+++..|+|+... .++-||.+||+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnra 304 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNRA 304 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCcc
Confidence 999999999999999999999999999999999988775433 334567777888999998765 569999999999
Q ss_pred CCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 376 QELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 376 ~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
+.++|+++| |+++.|+|++|+.++++-++.....+.... .+.+++.+..+.+..|+++|..+|++|.+.++|+.
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-~~vdle~~v~rpdkis~adi~aicqeagm~avr~n--- 380 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-DEVDLEDLVARPDKISGADINAICQEAGMLAVREN--- 380 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-cccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc---
Confidence 999999999 999999999999999999999998887553 56789999999999999999999999999999986
Q ss_pred hhhhhcccCCCcccHHHHHHHHHhhcC
Q psy2637 454 QVIKVDLKSVRNISYRDFLESLKRIRR 480 (502)
Q Consensus 454 ~~~~v~~~~~~~It~~d~~~al~~~~~ 480 (502)
...|...||.++.+....
T Consensus 381 ---------ryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 381 ---------RYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred ---------ceeeeHHHHHHHHHhhcC
Confidence 356889999999886543
No 14
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.9e-35 Score=275.61 Aligned_cols=241 Identities=32% Similarity=0.517 Sum_probs=208.5
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKY 301 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~ 301 (502)
.+..+++|++||+.+++..+-.+ .-+.+|+.|..|+ |++||+|||||||||++|+++|++.+.||+.+...++.+.+
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~-~yLenPe~Fg~WA--PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIM-EYLENPERFGDWA--PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHH-HHhhChHHhcccC--cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 35568999999999999876443 3346677777775 58999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhccccc-ChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcH
Q psy2637 302 VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE-GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDE 380 (502)
Q Consensus 302 ~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~-~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~ 380 (502)
+|...+.++.+++.|+...|||+||||+|.+.-++.- ........+.+.||.+|+|+.+. ..|+.||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~en--eGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKEN--EGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccC--CceEEEeecCChhhcCH
Confidence 9999999999999999999999999999999766532 12223456788999999999755 45999999999999999
Q ss_pred HHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHH-HHHHHHHhhhHHhhhhhhhhhhc
Q psy2637 381 AVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLT-NLAKDAALGPIRELNADQVIKVD 459 (502)
Q Consensus 381 ~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~-~L~~~a~~~airel~~~~~~~v~ 459 (502)
++++||...|+|.+|+.+||.+|++.++..+..+++ ..++.++..+.|+|++||. .++..|...++.+-
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~-~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed--------- 339 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD-ADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED--------- 339 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc-cCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc---------
Confidence 999999999999999999999999999999988764 4589999999999999996 57888888888875
Q ss_pred ccCCCcccHHHHHHHHHhhcC
Q psy2637 460 LKSVRNISYRDFLESLKRIRR 480 (502)
Q Consensus 460 ~~~~~~It~~d~~~al~~~~~ 480 (502)
...|+.+|+..|+++.++
T Consensus 340 ---~e~v~~edie~al~k~r~ 357 (368)
T COG1223 340 ---REKVEREDIEKALKKERK 357 (368)
T ss_pred ---hhhhhHHHHHHHHHhhcc
Confidence 356889999999987544
No 15
>KOG0728|consensus
Probab=100.00 E-value=1.1e-33 Score=265.20 Aligned_cols=253 Identities=34% Similarity=0.572 Sum_probs=224.2
Q ss_pred hcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccch
Q psy2637 219 LEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297 (502)
Q Consensus 219 ~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l 297 (502)
++.-|..+++-++|.+..++++++.+.+|..+|++|..++ ..|.++|||||||||||++|+++|....+.|++++.+++
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 4456777888899999999999999999999999999887 567999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC---hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCC
Q psy2637 298 TSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG---EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR 374 (502)
Q Consensus 298 ~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~ 374 (502)
..+|+|+..+.++.+|-+|+.+.|+|||.||||++.+.+..+ ......+..-+++..++|+.... ++-||.|||+
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk--nikvimatnr 295 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK--NIKVIMATNR 295 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc--ceEEEEeccc
Confidence 999999999999999999999999999999999998877543 33455667778899999997764 5899999999
Q ss_pred CCCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhh
Q psy2637 375 PQELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNA 452 (502)
Q Consensus 375 ~~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~ 452 (502)
.+-+|++++| |+++.|+|++|+.+.|.+|++.+.++.+. ....++..+|....|.+++++..+|.+|.+.++|+-
T Consensus 296 idild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl-~rgi~l~kiaekm~gasgaevk~vcteagm~alrer-- 372 (404)
T KOG0728|consen 296 IDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL-TRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER-- 372 (404)
T ss_pred cccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch-hcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh--
Confidence 9999999999 99999999999999999999999887654 345678999999999999999999999999999986
Q ss_pred hhhhhhcccCCCcccHHHHHHHHHhhcCCCCHHH
Q psy2637 453 DQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSS 486 (502)
Q Consensus 453 ~~~~~v~~~~~~~It~~d~~~al~~~~~s~~~~~ 486 (502)
...+|.+||.-|+.++-..-+...
T Consensus 373 ----------rvhvtqedfemav~kvm~k~~e~n 396 (404)
T KOG0728|consen 373 ----------RVHVTQEDFEMAVAKVMQKDSEKN 396 (404)
T ss_pred ----------hccccHHHHHHHHHHHHhcccccc
Confidence 357999999999887654443333
No 16
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-34 Score=309.22 Aligned_cols=256 Identities=46% Similarity=0.781 Sum_probs=235.5
Q ss_pred hcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccch
Q psy2637 219 LEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297 (502)
Q Consensus 219 ~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l 297 (502)
....+.+.|.+++|.+.+++.+.+.+.++..+++.+...+ .++.++||+||||||||++|+++|.+++.+|+.+..+++
T Consensus 233 ~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l 312 (494)
T COG0464 233 LFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSEL 312 (494)
T ss_pred ccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHH
Confidence 3457788999999999999999999999999999988744 566799999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCC
Q psy2637 298 TSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQE 377 (502)
Q Consensus 298 ~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~ 377 (502)
.++|+|++++.++.+|..|+...||||||||+|++.+.++.+......++.++++..++|..... +|+||+|||+|+.
T Consensus 313 ~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~--~v~vi~aTN~p~~ 390 (494)
T COG0464 313 LSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE--GVLVIAATNRPDD 390 (494)
T ss_pred hccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC--ceEEEecCCCccc
Confidence 99999999999999999999999999999999999999887776667899999999999887654 4999999999999
Q ss_pred CcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhh
Q psy2637 378 LDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNP-LSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQ 454 (502)
Q Consensus 378 l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~-l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~ 454 (502)
+|++++| ||+..++|++|+..+|.++++.++.+.... ..+.+++.+++.++||+++||..+|++|...++++..
T Consensus 391 ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~--- 467 (494)
T COG0464 391 LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR--- 467 (494)
T ss_pred cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc---
Confidence 9999999 999999999999999999999999876654 4578999999999999999999999999999999863
Q ss_pred hhhhcccCCCcccHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy2637 455 VIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAW 493 (502)
Q Consensus 455 ~~~v~~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w 493 (502)
...|+.+||..|++.++|+++ |++|
T Consensus 468 --------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 468 --------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred --------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 457999999999999999987 8887
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2e-33 Score=291.59 Aligned_cols=247 Identities=36% Similarity=0.629 Sum_probs=218.5
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
...|.++|++|+|.+.+++++.+.+.+|..+++++..++ .++.++||+||||||||++|+++|++++.+|+.+.++.+.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 457889999999999999999999999999999999876 6789999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC---hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 299 SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG---EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
..|.|.....+..+|..+....|+||||||+|.++..+... ......+.+.+++..+++.... .++.||+|||++
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~ 294 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRA 294 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCc
Confidence 99999999899999999999999999999999998765322 2233456677788888876544 458999999999
Q ss_pred CCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 376 QELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 376 ~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
+.+|++++| ||+..|+|++|+.++|.+|++.++.+.+.. .+.++..++..++||+++||.++|++|.+.++++.
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~--- 370 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN--- 370 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 999999998 999999999999999999999998876543 46788999999999999999999999999999875
Q ss_pred hhhhhcccCCCcccHHHHHHHHHhhcCC
Q psy2637 454 QVIKVDLKSVRNISYRDFLESLKRIRRS 481 (502)
Q Consensus 454 ~~~~v~~~~~~~It~~d~~~al~~~~~s 481 (502)
...|+.+||..|++.+...
T Consensus 371 ---------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 ---------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred ---------CCccCHHHHHHHHHHHHhc
Confidence 3579999999999987543
No 18
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=4e-33 Score=295.14 Aligned_cols=256 Identities=23% Similarity=0.396 Sum_probs=217.6
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~ 300 (502)
.+..+|++++|++.+++.+.+...... ......+ .+++++||+||||||||++|+++|++++.+|+.++++.+.+.
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGG 298 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccc
Confidence 456789999999999999887542211 1112222 567899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccc-cChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCc
Q psy2637 301 YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERK-EGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELD 379 (502)
Q Consensus 301 ~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~-~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~ 379 (502)
+.|..+..++.+|..+....||||||||||.++.... .+......+++..++..++.. ..+++||+|||.++.+|
T Consensus 299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----KSPVFVVATANNIDLLP 374 (489)
T ss_pred ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----CCceEEEEecCChhhCC
Confidence 9999999999999999999999999999999987543 234456677888888877642 34699999999999999
Q ss_pred HHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhh
Q psy2637 380 EAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNP-LSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVI 456 (502)
Q Consensus 380 ~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~-l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~ 456 (502)
++++| ||+..+++++|+.++|.+|++.++.+.... ..+.+++.+++.++||||+||+.+|..|...+..+.
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~------ 448 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK------ 448 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99998 999999999999999999999999886543 357789999999999999999999999998776543
Q ss_pred hhcccCCCcccHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHh
Q psy2637 457 KVDLKSVRNISYRDFLESLKRIRRS--VSPSSLIQYEAWNRDY 497 (502)
Q Consensus 457 ~v~~~~~~~It~~d~~~al~~~~~s--~~~~~l~~~~~w~~~~ 497 (502)
+.++.+||..|++.+.|. +..+.++++++|....
T Consensus 449 -------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 449 -------REFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred -------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 569999999999999996 4678999999998764
No 19
>KOG0729|consensus
Probab=100.00 E-value=1.2e-33 Score=266.96 Aligned_cols=244 Identities=33% Similarity=0.607 Sum_probs=219.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
+..|.++++|+.|..+.++.+++.+..|+.+|+-|-.++ .|+++||+|||||||||++||++|+..+..|+++-.+++.
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 456788999999999999999999999999999998887 7889999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC---hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 299 SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG---EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
.+|+|+....++.+|++|+..+.|+||+||||.+.+.+-.+ ......+..-+++..++|+... .++-|+.+||+|
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrp 326 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRP 326 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCC
Confidence 99999999999999999999999999999999998877443 3344566667788889998654 569999999999
Q ss_pred CCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 376 QELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 376 ~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
+.++++++| |+++.++|.+|+++.|.+|++.+....... .+.-++.+|..+..-++++|+.+|.+|.+.++|.-
T Consensus 327 dtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsve-rdir~ellarlcpnstgaeirsvcteagmfairar--- 402 (435)
T KOG0729|consen 327 DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR--- 402 (435)
T ss_pred CCcCHhhcCCcccccceeccCCcccccceeEEEeccccccc-cchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH---
Confidence 999999999 999999999999999999999988776543 45678999999999999999999999999999865
Q ss_pred hhhhhcccCCCcccHHHHHHHHHhh
Q psy2637 454 QVIKVDLKSVRNISYRDFLESLKRI 478 (502)
Q Consensus 454 ~~~~v~~~~~~~It~~d~~~al~~~ 478 (502)
....|..||.+|+.++
T Consensus 403 ---------rk~atekdfl~av~kv 418 (435)
T KOG0729|consen 403 ---------RKVATEKDFLDAVNKV 418 (435)
T ss_pred ---------hhhhhHHHHHHHHHHH
Confidence 2457889999998876
No 20
>KOG0652|consensus
Probab=100.00 E-value=1.6e-33 Score=265.44 Aligned_cols=256 Identities=32% Similarity=0.578 Sum_probs=226.1
Q ss_pred HHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCc
Q psy2637 210 LAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNAT 288 (502)
Q Consensus 210 ~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~ 288 (502)
....+..-.++..|..+++||+|.+..++++.+++.+|..+++-|..++ .||+++|+|||||||||++||+.|...+..
T Consensus 153 yDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT 232 (424)
T KOG0652|consen 153 YDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT 232 (424)
T ss_pred hhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch
Confidence 3333333344567788899999999999999999999999999999887 788999999999999999999999999999
Q ss_pred eEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHH---HHHHHHHHHHHhccCCCCCCCc
Q psy2637 289 FFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA---SRRLKTEFLLEFDGLHSNSEHR 365 (502)
Q Consensus 289 fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~---~~~~~~~ll~~l~g~~~~~~~~ 365 (502)
|..+.+..+...|+|...+.++..|..|....|+||||||+|.+..++..+.... ..+..-+|+..++|+.+. .+
T Consensus 233 FLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~--~~ 310 (424)
T KOG0652|consen 233 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD--DR 310 (424)
T ss_pred HHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--cc
Confidence 9999999999999999999999999999999999999999999988876554333 345556778888998765 56
Q ss_pred EEEEEEcCCCCCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy2637 366 LLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAA 443 (502)
Q Consensus 366 v~vIaaTN~~~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~ 443 (502)
+-||++||+.+-++|+++| |+++.|+|+.|+.+.|..|++.+.++.... .+.+++++++.+++|+|+..+++|-+|.
T Consensus 311 vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTddFNGAQcKAVcVEAG 389 (424)
T KOG0652|consen 311 VKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTDDFNGAQCKAVCVEAG 389 (424)
T ss_pred eEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcccccCchhheeeehhhh
Confidence 9999999999999999999 999999999999999999999999887654 6789999999999999999999999999
Q ss_pred hhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhcC
Q psy2637 444 LGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIRR 480 (502)
Q Consensus 444 ~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~~ 480 (502)
+.++|+- ...|+.+||.+.+..++.
T Consensus 390 MiALRr~------------atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 390 MIALRRG------------ATEVTHEDFMEGILEVQA 414 (424)
T ss_pred HHHHhcc------------cccccHHHHHHHHHHHHH
Confidence 9999986 356899999999877654
No 21
>KOG0726|consensus
Probab=100.00 E-value=4.8e-34 Score=272.51 Aligned_cols=244 Identities=34% Similarity=0.598 Sum_probs=216.9
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
+..|..++.||.|.+..++++++.+.+|+.+|++++..+ .||.+|+|||+||||||+||+|+|+...+.|+++-.+++.
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 456777899999999999999999999999999999886 7889999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhH---HHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 299 SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHE---ASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~---~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
.+|.|...+.++.+|..|..+.|+|+||||||++..++-+..+. ...+..-+|++.++|+.+. .+|-||.|||+.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr--gDvKvimATnri 334 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMATNRI 334 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc--CCeEEEEecccc
Confidence 99999999999999999999999999999999998877543332 2344555778888888764 569999999999
Q ss_pred CCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 376 QELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 376 ~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
+.+||++.| |+++.|.|+.|+...++.|+..+..+.... .+..++.+...-+.+|++||.++|.+|.+.|+|+.
T Consensus 335 e~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~-~dVnle~li~~kddlSGAdIkAictEaGllAlRer--- 410 (440)
T KOG0726|consen 335 ETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA-EDVNLEELIMTKDDLSGADIKAICTEAGLLALRER--- 410 (440)
T ss_pred cccCHhhcCCCccccccccCCCchhhhceeEEEeecccchh-ccccHHHHhhcccccccccHHHHHHHHhHHHHHHH---
Confidence 999999999 999999999999999999998887765442 46778888888888999999999999999999986
Q ss_pred hhhhhcccCCCcccHHHHHHHHHhh
Q psy2637 454 QVIKVDLKSVRNISYRDFLESLKRI 478 (502)
Q Consensus 454 ~~~~v~~~~~~~It~~d~~~al~~~ 478 (502)
.-.++++||..|..++
T Consensus 411 ---------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 411 ---------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred ---------HhhccHHHHHHHHHHH
Confidence 3469999999988765
No 22
>KOG0731|consensus
Probab=100.00 E-value=5.7e-33 Score=299.04 Aligned_cols=246 Identities=40% Similarity=0.668 Sum_probs=220.5
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
....+.|.|+.|.++++++|.+.|... .+|+.+..++ ..|+++||+||||||||+||||+|.+.+.||+.++++++..
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~fL-KNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKFL-KNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHHh-cCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 456689999999999999999998654 5677777765 77899999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccc----cChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 300 KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERK----EGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~----~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
.+.|....+++.+|..|+...||++|+||||.+...+. .+.+......+++++.+|||.... ..|+|+|+||++
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNRP 460 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCCc
Confidence 99999899999999999999999999999999988873 234455667889999999999766 469999999999
Q ss_pred CCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 376 QELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 376 ~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
+-+|++++| ||++.|.+++|+...|.+|+..++.......++.++..+|..|.||+|+||.++|++|+..+.|+.
T Consensus 461 d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~--- 537 (774)
T KOG0731|consen 461 DILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG--- 537 (774)
T ss_pred cccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc---
Confidence 999999999 999999999999999999999999987766677888899999999999999999999999999975
Q ss_pred hhhhhcccCCCcccHHHHHHHHHhhcCC
Q psy2637 454 QVIKVDLKSVRNISYRDFLESLKRIRRS 481 (502)
Q Consensus 454 ~~~~v~~~~~~~It~~d~~~al~~~~~s 481 (502)
...|+..||..|++.+...
T Consensus 538 ---------~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 538 ---------LREIGTKDLEYAIERVIAG 556 (774)
T ss_pred ---------cCccchhhHHHHHHHHhcc
Confidence 4679999999999855443
No 23
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=9.7e-33 Score=287.34 Aligned_cols=249 Identities=38% Similarity=0.662 Sum_probs=216.7
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
..+.+.|++|+|.+.+++.+.+.+..+..+++++..++ .++.++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 45788999999999999999999999999999999886 67789999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccCh---hHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC
Q psy2637 300 KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGE---HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ 376 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~---~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~ 376 (502)
.|.|.....++.+|+.+....|+||||||+|.+++.+.... .....+.+..++..+++.... .+++||+|||.++
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~--~~v~VI~aTn~~~ 281 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR--GNVKIIAATNRID 281 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC--CCEEEEEecCChh
Confidence 99999999999999999999999999999999987654322 122344555667677765433 4699999999999
Q ss_pred CCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhh
Q psy2637 377 ELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQ 454 (502)
Q Consensus 377 ~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~ 454 (502)
.++++++| ||+..|+|++|+.++|.+|++.++...... .+.++..++..++||+++||..+|++|...++++.
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~---- 356 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAGMFAIRDD---- 356 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 99999998 999999999999999999999988765443 34678999999999999999999999999998874
Q ss_pred hhhhcccCCCcccHHHHHHHHHhhcCCCCH
Q psy2637 455 VIKVDLKSVRNISYRDFLESLKRIRRSVSP 484 (502)
Q Consensus 455 ~~~v~~~~~~~It~~d~~~al~~~~~s~~~ 484 (502)
...|+.+||.+|+..++++...
T Consensus 357 --------~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 357 --------RTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred --------CCCcCHHHHHHHHHHHhccccc
Confidence 3579999999999999886543
No 24
>KOG0735|consensus
Probab=100.00 E-value=1.9e-32 Score=286.89 Aligned_cols=226 Identities=36% Similarity=0.651 Sum_probs=211.2
Q ss_pred CCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhh
Q psy2637 223 SPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKY 301 (502)
Q Consensus 223 ~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~ 301 (502)
....|++|.|..++++.+.+.+.+|..+|.+|.... .-+.+||||||||||||++|.++|..++..|+.+.+.++.++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 347899999999999999999999999999999876 4468999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHH
Q psy2637 302 VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEA 381 (502)
Q Consensus 302 ~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~ 381 (502)
+|+.+..++.+|+.|+..+|||||+||+|++.|+++-+......|+.++++.+|+|...- ..|.|+|||.+|+.+|++
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl--~GV~i~aaTsRpdliDpA 819 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL--DGVYILAATSRPDLIDPA 819 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc--ceEEEEEecCCccccCHh
Confidence 999999999999999999999999999999999999888888999999999999997664 459999999999999999
Q ss_pred HHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhh
Q psy2637 382 VLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELN 451 (502)
Q Consensus 382 l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~ 451 (502)
++| |+++.++.++|+..+|.+|++.+....... ++.+++.+|..|+||+|+||..|+..|.+.++.++-
T Consensus 820 LLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l 890 (952)
T KOG0735|consen 820 LLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEIL 890 (952)
T ss_pred hcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 999 999999999999999999999888765443 678999999999999999999999999999999874
No 25
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=8.4e-32 Score=281.14 Aligned_cols=246 Identities=35% Similarity=0.595 Sum_probs=215.0
Q ss_pred hcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccch
Q psy2637 219 LEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297 (502)
Q Consensus 219 ~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l 297 (502)
++..|..+|+||+|++.+++.+.+++..+..+++++..++ .++.++||+||||||||++|+++|++++.+|+.+.++++
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 3456778999999999999999999999999999998876 567899999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC---hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCC
Q psy2637 298 TSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG---EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR 374 (502)
Q Consensus 298 ~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~ 374 (502)
.+.|.|.....+..+|..+....|+||||||||.++..+... ......+.+..++..+++.... .++.||+|||+
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr 331 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNR 331 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCC
Confidence 999999999989999999999999999999999998765432 1223345556778888876543 45899999999
Q ss_pred CCCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhh
Q psy2637 375 PQELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNA 452 (502)
Q Consensus 375 ~~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~ 452 (502)
++.++++++| ||+..|+|++|+.++|.+|++.++.+.... .+.++..++..++|++++||..+|++|...|+++.
T Consensus 332 ~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~-- 408 (438)
T PTZ00361 332 IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEAGLLALRER-- 408 (438)
T ss_pred hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc--
Confidence 9999999997 999999999999999999999998876432 45688999999999999999999999999999875
Q ss_pred hhhhhhcccCCCcccHHHHHHHHHhhc
Q psy2637 453 DQVIKVDLKSVRNISYRDFLESLKRIR 479 (502)
Q Consensus 453 ~~~~~v~~~~~~~It~~d~~~al~~~~ 479 (502)
...|+.+||..|+..+.
T Consensus 409 ----------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 409 ----------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred ----------CCccCHHHHHHHHHHHH
Confidence 35799999999998864
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=1.5e-30 Score=279.64 Aligned_cols=245 Identities=40% Similarity=0.645 Sum_probs=210.4
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
...+.++|++++|++.+++++.+++.. ..+++.+...+ .++.++||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 346788999999999999999988765 45666666543 5678999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC---hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 299 SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG---EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
+.+.|...+.++.+|+.+....|+||||||||.+...+..+ ......+.++.++..+++.... .+++||+|||.+
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~~ 203 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNRP 203 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCCh
Confidence 99999988899999999999999999999999998776542 2334457788899999887554 359999999999
Q ss_pred CCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 376 QELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 376 ~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
+.++++++| ||+..+++++|+.++|.+|++.++...... .+.++..++..+.||+++||..+|++|...+.++.
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~--- 279 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAALLAARKN--- 279 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 999999998 999999999999999999999998865443 46788999999999999999999999988777653
Q ss_pred hhhhhcccCCCcccHHHHHHHHHhhcC
Q psy2637 454 QVIKVDLKSVRNISYRDFLESLKRIRR 480 (502)
Q Consensus 454 ~~~~v~~~~~~~It~~d~~~al~~~~~ 480 (502)
...|+.+||..|+..+..
T Consensus 280 ---------~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 280 ---------KTEITMNDIEEAIDRVIA 297 (495)
T ss_pred ---------CCCCCHHHHHHHHHHHhc
Confidence 357999999999987643
No 27
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=276.75 Aligned_cols=241 Identities=39% Similarity=0.653 Sum_probs=212.1
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcC-CCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGL-RTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~-~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~ 300 (502)
...++|.|+.|.+++++++.+.|..... |.-+..+ +.-|+++|++||||||||+||+++|.+.+.||+.++.+++..-
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~-p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKN-PKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhC-chhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 5678999999999999999998865543 4434444 3678999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhccccc---ChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCC
Q psy2637 301 YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE---GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQE 377 (502)
Q Consensus 301 ~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~ 377 (502)
|+|-....++.+|+.|+...|||+||||||++...+.. +....-...+++++.+|||.... ..|++|++||+|+-
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~--~gviviaaTNRpdV 300 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN--EGVIVIAATNRPDV 300 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC--CceEEEecCCCccc
Confidence 99999999999999999999999999999999887753 33445566889999999999754 45999999999999
Q ss_pred CcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhh
Q psy2637 378 LDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQV 455 (502)
Q Consensus 378 l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~ 455 (502)
+|++++| ||++.|.++.|+...|.+|++.++...... .+.++..+|+.+.|++++|+.+++++|...+.|+.
T Consensus 301 lD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n----- 374 (596)
T COG0465 301 LDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNEAALLAARRN----- 374 (596)
T ss_pred chHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc-----
Confidence 9999999 999999999999999999999888765443 46788889999999999999999999999999986
Q ss_pred hhhcccCCCcccHHHHHHHHHhh
Q psy2637 456 IKVDLKSVRNISYRDFLESLKRI 478 (502)
Q Consensus 456 ~~v~~~~~~~It~~d~~~al~~~ 478 (502)
...|++.||.+|+..+
T Consensus 375 -------~~~i~~~~i~ea~drv 390 (596)
T COG0465 375 -------KKEITMRDIEEAIDRV 390 (596)
T ss_pred -------CeeEeccchHHHHHHH
Confidence 4679999999998754
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=6e-30 Score=264.88 Aligned_cols=244 Identities=40% Similarity=0.691 Sum_probs=209.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
...+.+.|++++|.+.+++.+.+++..+..+++++..++ .++.++||+||||||||++|+++|+.++.+|+.+.++.+.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 356788999999999999999999999999999988776 5678999999999999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccCh---hHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 299 SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGE---HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~---~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
..+.|.....+..+|..+....|+||||||+|.+...+.... .....+.+..++..+++.... .+++||+|||.+
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~--~~v~vI~ttn~~ 271 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR--GNVKVIAATNRP 271 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEecCCh
Confidence 889999888889999999999999999999999976654322 122334455666667765433 469999999999
Q ss_pred CCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 376 QELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 376 ~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
+.++++++| ||+..++|+.|+.++|.+|++.++...... .+.++..++..+.||+++||..+|+.|...++++.
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~--- 347 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE--- 347 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC---
Confidence 999999998 999999999999999999999988765432 34578999999999999999999999999998874
Q ss_pred hhhhhcccCCCcccHHHHHHHHHhh
Q psy2637 454 QVIKVDLKSVRNISYRDFLESLKRI 478 (502)
Q Consensus 454 ~~~~v~~~~~~~It~~d~~~al~~~ 478 (502)
...|+.+||..|+..+
T Consensus 348 ---------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 ---------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred ---------CCccCHHHHHHHHHHh
Confidence 3579999999999764
No 29
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=7.3e-29 Score=262.40 Aligned_cols=271 Identities=31% Similarity=0.536 Sum_probs=206.5
Q ss_pred hcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCc---------
Q psy2637 219 LEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNAT--------- 288 (502)
Q Consensus 219 ~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~--------- 288 (502)
.+..|+++|++|+|++..++.+++.+..|..+++++...+ .+++++||+||||||||++|+++|++++.+
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 4567889999999999999999999999999999998765 567899999999999999999999998543
Q ss_pred -eEEeeccchhhhhhhhhHHHHHHHHHHHHhc----CCeEEEEcCCcchhcccccC-hhHHHHHHHHHHHHHhccCCCCC
Q psy2637 289 -FFSISAASLTSKYVGQGEKLVRALFAMAREL----QPSIIFIDEVDSVLSERKEG-EHEASRRLKTEFLLEFDGLHSNS 362 (502)
Q Consensus 289 -fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~-~~~~~~~~~~~ll~~l~g~~~~~ 362 (502)
|+.+..+++.++|.|..+..++.+|..++.. .|+||||||+|.++..+..+ ..+...++..+|+..+++....
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~- 331 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL- 331 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC-
Confidence 6667777888899999999999999888764 68999999999998876543 2344566788899999987654
Q ss_pred CCcEEEEEEcCCCCCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCC----------HHHHHHHHHh----
Q psy2637 363 EHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLS----------QLELDAVAKL---- 426 (502)
Q Consensus 363 ~~~v~vIaaTN~~~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~----------~~~l~~la~~---- 426 (502)
.+++||+|||+++.||++++| ||+..|+|++|+.++|.+|++.++... .+++ ..++..+++.
T Consensus 332 -~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~l~~~~g~~~a~~~al~~~av~~ 409 (512)
T TIGR03689 332 -DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLDADLAEFDGDREATAAALIQRAVDH 409 (512)
T ss_pred -CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCchHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 459999999999999999999 999999999999999999999998652 2221 1122222221
Q ss_pred -------------------------cCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhc-C
Q psy2637 427 -------------------------TEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIR-R 480 (502)
Q Consensus 427 -------------------------t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~-~ 480 (502)
.+.+||+.|.+++.+|...++.+.- ......|+.+|+..|+..-. .
T Consensus 410 ~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~--------~~~~~~~~~~~l~~a~~~e~~~ 481 (512)
T TIGR03689 410 LYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHI--------TGGQVGLRIEHLLAAVLDEFRE 481 (512)
T ss_pred HhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHH--------hcCCcCcCHHHHHHHHHHhhcc
Confidence 2345677777777777776665431 11235799999999987422 1
Q ss_pred CCCHHHHHHHHHHHHHhCCC
Q psy2637 481 SVSPSSLIQYEAWNRDYGDV 500 (502)
Q Consensus 481 s~~~~~l~~~~~w~~~~g~~ 500 (502)
+-....-..-++|.+.-|..
T Consensus 482 ~~~~~~~~~~~~w~~~~~~~ 501 (512)
T TIGR03689 482 SEDLPNTTNPDDWARISGKK 501 (512)
T ss_pred cccCCCCCCHHHHhhhhCCC
Confidence 11111222345788876653
No 30
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=6.4e-29 Score=270.81 Aligned_cols=241 Identities=37% Similarity=0.632 Sum_probs=205.4
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~ 300 (502)
...++|+|++|.+++++.+.+.+.. ...++.+..++ ..+.++||+||||||||++|+++|.+++.||+.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 4567899999999999999988755 34555555543 567899999999999999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhccccc---ChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCC
Q psy2637 301 YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE---GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQE 377 (502)
Q Consensus 301 ~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~ 377 (502)
+.|.....++.+|..+....|+||||||||.+...+.. +........++.++..+++.... .+++||+|||+++.
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~--~~ViVIaaTN~~~~ 333 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN--KGVIVIAATNRVDI 333 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC--CCeeEEEecCchHh
Confidence 88888888899999999999999999999999866532 22334456777888888887544 45999999999999
Q ss_pred CcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhh
Q psy2637 378 LDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQV 455 (502)
Q Consensus 378 l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~ 455 (502)
++++++| ||+..+.+++|+.++|.+|++.++..... ..+.++..++..+.||+++||.+++++|...+.++.
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~----- 407 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAILTARRK----- 407 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 9999998 89999999999999999999999987432 356789999999999999999999999998877664
Q ss_pred hhhcccCCCcccHHHHHHHHHhh
Q psy2637 456 IKVDLKSVRNISYRDFLESLKRI 478 (502)
Q Consensus 456 ~~v~~~~~~~It~~d~~~al~~~ 478 (502)
...|+.+||..|+..+
T Consensus 408 -------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 -------KATITMKEIDTAIDRV 423 (638)
T ss_pred -------CCCcCHHHHHHHHHHH
Confidence 3579999999999876
No 31
>KOG0730|consensus
Probab=99.96 E-value=4.6e-29 Score=261.72 Aligned_cols=254 Identities=38% Similarity=0.638 Sum_probs=222.4
Q ss_pred CCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhh
Q psy2637 223 SPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKY 301 (502)
Q Consensus 223 ~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~ 301 (502)
+++. .+++|.......+.+.+..++.++..+...+ .+++++|+|||||||||.+++++|++.+..++.+++.++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4445 7899999999999999999999999988776 6789999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhcC-CeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcH
Q psy2637 302 VGQGEKLVRALFAMARELQ-PSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDE 380 (502)
Q Consensus 302 ~g~~~~~~~~lf~~a~~~~-p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~ 380 (502)
.|+.+..++..|+.+...+ |+++||||+|.+++++..... ...++..+++..++|.... .+++||++||+|..|++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~--~~vivl~atnrp~sld~ 335 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPD--AKVIVLAATNRPDSLDP 335 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCc--CcEEEEEecCCccccCh
Confidence 9999999999999999999 999999999999998766554 6788999999999988643 46999999999999999
Q ss_pred HHHc-cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhc
Q psy2637 381 AVLR-RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVD 459 (502)
Q Consensus 381 ~l~r-Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~ 459 (502)
+++| ||++.+.+..|+..+|.+|++.+....+.. ++.++..++..+.||.++||..+|..|...++|+
T Consensus 336 alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 336 ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 9998 999999999999999999999999988766 7889999999999999999999999999999987
Q ss_pred ccCCCcccHHHHHHHHHhhcCCCCHHHHHHHH--HHHHHhC
Q psy2637 460 LKSVRNISYRDFLESLKRIRRSVSPSSLIQYE--AWNRDYG 498 (502)
Q Consensus 460 ~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~--~w~~~~g 498 (502)
++++|..|+..++|+...+.+-+.. .|++.+|
T Consensus 405 -------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGG 438 (693)
T KOG0730|consen 405 -------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGG 438 (693)
T ss_pred -------hHHHHHHHHhcCCchhhhheeccCCCCChhhccC
Confidence 4667777777666664433332222 3555554
No 32
>KOG0732|consensus
Probab=99.96 E-value=1.6e-28 Score=271.04 Aligned_cols=259 Identities=39% Similarity=0.653 Sum_probs=229.9
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHc-----cCceEEeecc
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATAC-----NATFFSISAA 295 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~i~~s 295 (502)
...+.|++++|.+.++..++++|..|+.+|+.|...+ .|+++||++||||||||+.|+++|..+ ...|+.-..+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 4567899999999999999999999999999999886 778999999999999999999999988 3567777788
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 296 SLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 296 ~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
+..++|+|+.++.++.+|+.|+.+.|+|+|+||||-|.+.+...+......+...|+..|+|+.... .|+||+|||++
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRg--qVvvigATnRp 416 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRG--QVVVIGATNRP 416 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCC--ceEEEcccCCc
Confidence 8999999999999999999999999999999999999999877777777888999999999997764 59999999999
Q ss_pred CCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 376 QELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 376 ~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
+.++++++| ||++.++|++|+.+.|.+|+..+-.++..++....+..+|+.+.||.++||+.||..|++.++++-...
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq 496 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQ 496 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCe
Confidence 999999999 999999999999999999999999998888899999999999999999999999999999999875443
Q ss_pred hhhh-----hcccCCCcccHHHHHHHHHhhcCCCC
Q psy2637 454 QVIK-----VDLKSVRNISYRDFLESLKRIRRSVS 483 (502)
Q Consensus 454 ~~~~-----v~~~~~~~It~~d~~~al~~~~~s~~ 483 (502)
+... ++.. ...+...||..|+..+.|+..
T Consensus 497 ~y~s~~kl~~d~~-~ikV~~~~f~~A~~~i~ps~~ 530 (1080)
T KOG0732|consen 497 IYSSSDKLLIDVA-LIKVEVRDFVEAMSRITPSSR 530 (1080)
T ss_pred eecccccccccch-hhhhhhHhhhhhhhccCCCCC
Confidence 3322 2222 233888999999988777644
No 33
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=5.4e-28 Score=271.06 Aligned_cols=259 Identities=40% Similarity=0.688 Sum_probs=221.2
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~ 300 (502)
.+.++|++|+|.+.+++.+.+++..+..+++++..++ .++.++||+||||||||++|+++|++++.+|+.+++.++.+.
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4678999999999999999999999999999998876 567899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcH
Q psy2637 301 YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDE 380 (502)
Q Consensus 301 ~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~ 380 (502)
+.|.....+..+|+.+....|++|||||||.+.+.+.....+...+++..|+..+++.... ..++||++||.++.+++
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~--~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR--GRVIVIGATNRPDALDP 329 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC--CCEEEEeecCChhhcCH
Confidence 9999988899999999999999999999999988876555555677888899999887543 45899999999999999
Q ss_pred HHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhh--
Q psy2637 381 AVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVI-- 456 (502)
Q Consensus 381 ~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~-- 456 (502)
+++| ||+..+.+++|+.++|.+|++.+...... ..+.++..++..+.||+++++..+++.|...++++.......
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9998 99999999999999999999977765433 245678999999999999999999999999998875321110
Q ss_pred ---hh--cccCCCcccHHHHHHHHHhhcCCCC
Q psy2637 457 ---KV--DLKSVRNISYRDFLESLKRIRRSVS 483 (502)
Q Consensus 457 ---~v--~~~~~~~It~~d~~~al~~~~~s~~ 483 (502)
.+ .......++.+||..|++.++|+..
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~ 440 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSAI 440 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhcccccc
Confidence 00 1122346899999999999988753
No 34
>KOG0651|consensus
Probab=99.96 E-value=9e-29 Score=238.69 Aligned_cols=247 Identities=33% Similarity=0.618 Sum_probs=211.8
Q ss_pred HhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccc
Q psy2637 218 ILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAAS 296 (502)
Q Consensus 218 ~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~ 296 (502)
..+.....+|+++.|.-.+..++.+.+..|..+++++..++ .+|.+++||||||||||++|+++|..++..|+.+..++
T Consensus 122 ~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~ 201 (388)
T KOG0651|consen 122 SHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSA 201 (388)
T ss_pred hhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhh
Confidence 33456677999999999999999999999999999999986 78899999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccCh---hHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcC
Q psy2637 297 LTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGE---HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATN 373 (502)
Q Consensus 297 l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~---~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN 373 (502)
+.++|.|+..+.+++.|..|+.+.||+||+||||+..+.+.... .....+.+.+|+..|+|.... .+|-+|+|||
T Consensus 202 lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l--~rVk~ImatN 279 (388)
T KOG0651|consen 202 LVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL--HRVKTIMATN 279 (388)
T ss_pred hhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc--ccccEEEecC
Confidence 99999999999999999999999999999999999988774332 233445556677777777554 4589999999
Q ss_pred CCCCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhh
Q psy2637 374 RPQELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELN 451 (502)
Q Consensus 374 ~~~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~ 451 (502)
+|+.|+++++| |+++.+.+++|+...|..+++.+...... ..+.+.+.+.+.++|+.++|+++.|++|-..++++.+
T Consensus 280 rpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~-~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~ 358 (388)
T KOG0651|consen 280 RPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF-HGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER 358 (388)
T ss_pred CccccchhhcCCccccceeccCCcchhhceeeEeeccccccc-cccccHHHHHHHHhccChHHHhhhcccccccccchhh
Confidence 99999999999 99999999999999999988776654221 2334578889999999999999999999998888753
Q ss_pred hhhhhhhcccCCCcccHHHHHHHHHhhc
Q psy2637 452 ADQVIKVDLKSVRNISYRDFLESLKRIR 479 (502)
Q Consensus 452 ~~~~~~v~~~~~~~It~~d~~~al~~~~ 479 (502)
..+-.+||..++.+..
T Consensus 359 ------------~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 359 ------------DEVLHEDFMKLVRKQA 374 (388)
T ss_pred ------------HHHhHHHHHHHHHHHH
Confidence 4567889988887664
No 35
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=1.2e-27 Score=273.69 Aligned_cols=202 Identities=20% Similarity=0.298 Sum_probs=166.0
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhh-------------------------------------
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKY------------------------------------- 301 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~------------------------------------- 301 (502)
.+++||||+||||||||+||+++|.+++.||+.++++++.+.+
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 6789999999999999999999999999999999999987543
Q ss_pred ----hhhh--HHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCC-CCCCcEEEEEEcCC
Q psy2637 302 ----VGQG--EKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHS-NSEHRLLVMGATNR 374 (502)
Q Consensus 302 ----~g~~--~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~-~~~~~v~vIaaTN~ 374 (502)
.+.. ...++.+|+.|+.++||||||||||++..+.. ....+..|+..|+|... ....+|+||||||+
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~~s~~~VIVIAATNR 1781 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCERCSTRNILVIASTHI 1781 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccccccCCCCCEEEEEeCCC
Confidence 1111 12367899999999999999999999976521 11135677888887642 22356999999999
Q ss_pred CCCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCH--HHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhh
Q psy2637 375 PQELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQ--LELDAVAKLTEGYSGSDLTNLAKDAALGPIREL 450 (502)
Q Consensus 375 ~~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~--~~l~~la~~t~g~s~~dL~~L~~~a~~~airel 450 (502)
|+.|||+++| ||++.|.++.|+..+|.+++..++...+..+.+ .+++.+|..|.||+|+||.+||++|+..++++.
T Consensus 1782 PD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1782 PQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred cccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999 999999999999999999988765444444432 468999999999999999999999999999975
Q ss_pred hhhhhhhhcccCCCcccHHHHHHHHHhh
Q psy2637 451 NADQVIKVDLKSVRNISYRDFLESLKRI 478 (502)
Q Consensus 451 ~~~~~~~v~~~~~~~It~~d~~~al~~~ 478 (502)
...|+.+|+..|+...
T Consensus 1862 ------------ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1862 ------------KSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred ------------CCccCHHHHHHHHHHH
Confidence 3568888888888754
No 36
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=7.4e-27 Score=257.07 Aligned_cols=242 Identities=36% Similarity=0.624 Sum_probs=204.9
Q ss_pred CCCcccccChHHHHHHHHHHHhCcCCChhhhhcC-CCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhh
Q psy2637 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGL-RTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYV 302 (502)
Q Consensus 224 ~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~-~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~ 302 (502)
...|.++.|.+.+++++.+.+.... .+..+..+ ...++++||+||||||||++|++++.+++.+|+.++++++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~~~-~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYLR-EPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHHhh-CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 4578999999999999998886643 33333333 245678999999999999999999999999999999999999888
Q ss_pred hhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC---hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCc
Q psy2637 303 GQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG---EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELD 379 (502)
Q Consensus 303 g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~ 379 (502)
+.....++.+|..+....|+||||||+|.+...+..+ ......+.++.++..+++.... ..++||+|||+++.+|
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~--~~vivIaaTN~p~~lD 304 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPDVLD 304 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC--CCeeEEEecCChhhcC
Confidence 9888889999999999999999999999998776532 2334456788899999987654 4599999999999999
Q ss_pred HHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhh
Q psy2637 380 EAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIK 457 (502)
Q Consensus 380 ~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~ 457 (502)
++++| ||++.+.|++|+.++|.+|++.++.+.... .+.++..+++.+.||+++||.++|++|...+.++.
T Consensus 305 ~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~------- 376 (644)
T PRK10733 305 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARGN------- 376 (644)
T ss_pred HHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 99998 999999999999999999999999875432 35678899999999999999999999999888764
Q ss_pred hcccCCCcccHHHHHHHHHhhcCC
Q psy2637 458 VDLKSVRNISYRDFLESLKRIRRS 481 (502)
Q Consensus 458 v~~~~~~~It~~d~~~al~~~~~s 481 (502)
...|+.+||..|+..+.+.
T Consensus 377 -----~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 377 -----KRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred -----CCcccHHHHHHHHHHHhcc
Confidence 4579999999998866543
No 37
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.95 E-value=1.8e-28 Score=253.68 Aligned_cols=227 Identities=23% Similarity=0.340 Sum_probs=183.0
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLT 298 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~ 298 (502)
....+|++|+|.++++..+.+.+ ...+..+.+|||.|++||||+.+|++||+.+ +.||+.+||++++
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~a----------kr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELA----------KRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHH----------HhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 44568999999999999999988 6677888999999999999999999999988 6899999999987
Q ss_pred hh-------------hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc-------cC
Q psy2637 299 SK-------------YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD-------GL 358 (502)
Q Consensus 299 ~~-------------~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~-------g~ 358 (502)
.. |.|+...-..++|+.|.+ |+||||||..| +..+|..||+.++ |.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----------CHHHHHHHHHHHhhceEEecCC
Confidence 43 445544334688998888 99999999877 3345566666654 56
Q ss_pred CCCCCCcEEEEEEcCCC--CCCcHHHHc-----cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCC
Q psy2637 359 HSNSEHRLLVMGATNRP--QELDEAVLR-----RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYS 431 (502)
Q Consensus 359 ~~~~~~~v~vIaaTN~~--~~l~~~l~r-----Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s 431 (502)
....+.+|+||||||+. +.+..+-|| |++ ++.+.+|++++|.+++..++..+-. ..-..+.+...|++
T Consensus 375 t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLN-V~~i~iPPLReR~eDI~~L~~~Fl~----k~s~~~~~~v~~ls 449 (560)
T COG3829 375 TKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLN-VIPITIPPLRERKEDIPLLAEYFLD----KFSRRYGRNVKGLS 449 (560)
T ss_pred CCceeeEEEEEeccCcCHHHHHhcCcchhhheeeec-eeeecCCCcccCcchHHHHHHHHHH----HHHHHcCCCcccCC
Confidence 66667899999999985 455555455 997 9999999999999999888765421 11244555667899
Q ss_pred HHHHHHHHHHHHhhhHHhhhhhhhhhhc-ccCCCcccHHHHH-HHHHh
Q psy2637 432 GSDLTNLAKDAALGPIRELNADQVIKVD-LKSVRNISYRDFL-ESLKR 477 (502)
Q Consensus 432 ~~dL~~L~~~a~~~airel~~~~~~~v~-~~~~~~It~~d~~-~al~~ 477 (502)
++.+..|.+|+||||+||+.|.+++++. ......|+.+|++ .++..
T Consensus 450 ~~a~~~L~~y~WPGNVRELeNviER~v~~~~~~~~I~~~~lp~~~l~~ 497 (560)
T COG3829 450 PDALALLLRYDWPGNVRELENVIERAVNLVESDGLIDADDLPAFALEE 497 (560)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhccCCcceeehhhcchhhhcc
Confidence 9999999999999999999999999986 5556679999998 56554
No 38
>KOG0741|consensus
Probab=99.94 E-value=1.7e-26 Score=235.75 Aligned_cols=268 Identities=29% Similarity=0.491 Sum_probs=216.2
Q ss_pred CCCCCccc--ccChHHHHHHHH-HHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccC-ceEEeeccc
Q psy2637 222 GSPVQWQD--IAGQEVAKQALH-EMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNA-TFFSISAAS 296 (502)
Q Consensus 222 ~~~~~~~~--iiG~~~~~~~l~-~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~-~fv~i~~s~ 296 (502)
.|...|++ |+|.+..-..+. ++.......|+..++++ ..-+++|||||||||||++||.|.+-+++ +--.+|..+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 45555554 778876655554 45555556688888887 45689999999999999999999999953 445689999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhc--------CCeEEEEcCCcchhccccc--ChhHHHHHHHHHHHHHhccCCCCCCCcE
Q psy2637 297 LTSKYVGQGEKLVRALFAMAREL--------QPSIIFIDEVDSVLSERKE--GEHEASRRLKTEFLLEFDGLHSNSEHRL 366 (502)
Q Consensus 297 l~~~~~g~~~~~~~~lf~~a~~~--------~p~iLfLDEId~L~~~~~~--~~~~~~~~~~~~ll~~l~g~~~~~~~~v 366 (502)
+.++|+|+++..++.+|..|... .--||++||||+++..+.. +.......+.++||..++|...- .++
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNI 370 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNI 370 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcE
Confidence 99999999999999999877531 1249999999999988765 33456788999999999998665 469
Q ss_pred EEEEEcCCCCCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhh---cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2637 367 LVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNK---HGNPLSQLELDAVAKLTEGYSGSDLTNLAKD 441 (502)
Q Consensus 367 ~vIaaTN~~~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~---~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~ 441 (502)
+||+-||+.+.+|++++| ||...+++.+|+..-|.+|++.+..+ ++..-++.++++||..|..|||++|+-|++.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 999999999999999999 99989999999999999999988765 3333467899999999999999999999999
Q ss_pred HHhhhHHhhhhhh-hhhhc--ccCCCcccHHHHHHHHHhhcCC--CCHHHHHHHH
Q psy2637 442 AALGPIRELNADQ-VIKVD--LKSVRNISYRDFLESLKRIRRS--VSPSSLIQYE 491 (502)
Q Consensus 442 a~~~airel~~~~-~~~v~--~~~~~~It~~d~~~al~~~~~s--~~~~~l~~~~ 491 (502)
|...|+.+.-... ...+. -...-.|+.+||..|+..++|. ++.++++.|.
T Consensus 451 A~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred HHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 9999987763332 11111 1234579999999999999997 5788888887
No 39
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=8.6e-25 Score=218.80 Aligned_cols=187 Identities=19% Similarity=0.246 Sum_probs=153.2
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhc-----CCeEEEEcCCcchh
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMAREL-----QPSIIFIDEVDSVL 333 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~-----~p~iLfLDEId~L~ 333 (502)
.+|.+++|+||||||||++|+++|++++.+|+.++++++.++|.|+.++.++.+|..|... +||||||||||.++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence 5678999999999999999999999999999999999999999999999999999999753 69999999999999
Q ss_pred cccccChhHHHHHHH-HHHHHHhccC----------CCCCCCcEEEEEEcCCCCCCcHHHHc--cccceeeecCCCHHHH
Q psy2637 334 SERKEGEHEASRRLK-TEFLLEFDGL----------HSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTR 400 (502)
Q Consensus 334 ~~~~~~~~~~~~~~~-~~ll~~l~g~----------~~~~~~~v~vIaaTN~~~~l~~~l~r--Rf~~~I~i~~P~~~er 400 (502)
+.+...+.....++. .+|+..+++. ......+|.||+|||+|+.|+++++| ||++. +..|+.++|
T Consensus 226 g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~--i~lPd~e~R 303 (413)
T PLN00020 226 GRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDR 303 (413)
T ss_pred CCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce--eCCCCHHHH
Confidence 988655555544554 6888887753 12334579999999999999999999 99974 468999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHhhhHHh
Q psy2637 401 KSLLEKLLNKHGNPLSQLELDAVAKLTEG----YSGSDLTNLAKDAALGPIRE 449 (502)
Q Consensus 401 ~~il~~~l~~~~~~l~~~~l~~la~~t~g----~s~~dL~~L~~~a~~~aire 449 (502)
.+|++.+++..+ ++..++..|+....| |.++--..+..++...-+.+
T Consensus 304 ~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 304 IGVVHGIFRDDG--VSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE 354 (413)
T ss_pred HHHHHHHhccCC--CCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 999999998764 457889999988876 45544444555544444443
No 40
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.92 E-value=5.2e-26 Score=232.51 Aligned_cols=217 Identities=22% Similarity=0.270 Sum_probs=167.7
Q ss_pred CCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhh
Q psy2637 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSK 300 (502)
Q Consensus 224 ~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~ 300 (502)
......|||+++++.++.+.| +.++..+.+|||.|++||||+.+||+||+.+ +.|||.+||+.++..
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i----------~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEI----------EVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHH----------HHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 446778999999999999998 6777888999999999999999999999988 689999999999854
Q ss_pred -------------hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc-------cCCC
Q psy2637 301 -------------YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD-------GLHS 360 (502)
Q Consensus 301 -------------~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~-------g~~~ 360 (502)
|.|+.... .+.|+.|.+ |+||||||..|. ..+|.+|++.++ |...
T Consensus 289 LlESELFGHeKGAFTGA~~~r-~GrFElAdG---GTLFLDEIGelP-----------L~lQaKLLRvLQegEieRvG~~r 353 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTR-RGRFELADG---GTLFLDEIGELP-----------LALQAKLLRVLQEGEIERVGGDR 353 (550)
T ss_pred HHHHHHhcccccccccchhcc-CcceeecCC---CeEechhhccCC-----------HHHHHHHHHHHhhcceeecCCCc
Confidence 33333322 567777777 999999998773 334455555543 5556
Q ss_pred CCCCcEEEEEEcCCC--CCCc-----HHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHH
Q psy2637 361 NSEHRLLVMGATNRP--QELD-----EAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGS 433 (502)
Q Consensus 361 ~~~~~v~vIaaTN~~--~~l~-----~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~ 433 (502)
..+.+|+||||||+. +.+. ..+.-|++ ++.+..|+++||.+++..++..+- +..-.++......++++
T Consensus 354 ~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLs-V~Pl~lPPLRER~~DIplLA~~Fl----e~~~~~~gr~~l~ls~~ 428 (550)
T COG3604 354 TIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLS-VFPLELPPLRERPEDIPLLAGYFL----EKFRRRLGRAILSLSAE 428 (550)
T ss_pred eeEEEEEEEeccchhHHHHHHcCcchhhhhhccc-ccccCCCCcccCCccHHHHHHHHH----HHHHHhcCCcccccCHH
Confidence 666889999999984 2333 33333886 999999999999999987776541 12223333334579999
Q ss_pred HHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHH
Q psy2637 434 DLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDF 471 (502)
Q Consensus 434 dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~ 471 (502)
.++.|.++.|+||+||+.|.+++++.+. +..++.+|+
T Consensus 429 Al~~L~~y~wPGNVRELen~veRavlla-~~~~~~~d~ 465 (550)
T COG3604 429 ALELLSSYEWPGNVRELENVVERAVLLA-GRLTRRGDL 465 (550)
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHh-cccCCCcce
Confidence 9999999999999999999999999877 556665664
No 41
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.91 E-value=8.5e-26 Score=240.11 Aligned_cols=296 Identities=19% Similarity=0.251 Sum_probs=209.3
Q ss_pred cccc-----CcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhhhccCChhHHHHHHH
Q psy2637 112 EMAS-----TVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVNCYYGSGEKWERAQR 185 (502)
Q Consensus 112 ~~~~-----~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~~~~~~~~~~~~~~~ 185 (502)
.||+ ++|+++++++++.+|..++++.++. ++.+.++++++.|+ +|+.||++.+.... ...++..
T Consensus 49 ~mp~~~~~~~~g~~~l~~i~~~~~~~piI~lt~~-------~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~---~i~~~~~ 118 (445)
T TIGR02915 49 GLPPDADGASEGLAALQQILAIAPDTKVIVITGN-------DDRENAVKAIGLGAYDFYQKPIDPDVLKL---IVDRAFH 118 (445)
T ss_pred CCCCCcCCCCCHHHHHHHHHhhCCCCCEEEEecC-------CCHHHHHHHHHCCccEEEeCCCCHHHHHH---HHhhhhh
Confidence 4774 8999999999999999999999998 89999999999999 99999998743211 1111111
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceE
Q psy2637 186 LQEKMKNNLKMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLL 265 (502)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vL 265 (502)
... + ..+. ..+... .....+..++|.+..++.+.+.+ ..+.....+++
T Consensus 119 ~~~-l------~~~~-------~~l~~~--------~~~~~~~~lig~s~~~~~l~~~i----------~~~a~~~~~vl 166 (445)
T TIGR02915 119 LYT-L------ETEN-------RRLQSA--------LGGTALRGLITSSPGMQKICRTI----------EKIAPSDITVL 166 (445)
T ss_pred hhh-h------HHHH-------HHhhhh--------hhcccccceeecCHHHHHHHHHH----------HHHhCCCCCEE
Confidence 000 0 0000 000000 01113456889888888888776 33344568899
Q ss_pred EecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhh-----hH-------HHHHHHHHHHHhcCCeEEEEcCCc
Q psy2637 266 LFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQ-----GE-------KLVRALFAMARELQPSIIFIDEVD 330 (502)
Q Consensus 266 L~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~-----~~-------~~~~~lf~~a~~~~p~iLfLDEId 330 (502)
|+|++||||+++|+++|..+ +.||+.++|+.+.....+. .. ....+.++.+ ..++||||||+
T Consensus 167 i~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~ 243 (445)
T TIGR02915 167 LLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIG 243 (445)
T ss_pred EECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechh
Confidence 99999999999999999987 4799999999875432211 00 0012233333 34899999999
Q ss_pred chhcccccChhHHHHHHHHHHHHHhcc-------CCCCCCCcEEEEEEcCCC-------CCCcHHHHccccceeeecCCC
Q psy2637 331 SVLSERKEGEHEASRRLKTEFLLEFDG-------LHSNSEHRLLVMGATNRP-------QELDEAVLRRFSKRIYVTLPD 396 (502)
Q Consensus 331 ~L~~~~~~~~~~~~~~~~~~ll~~l~g-------~~~~~~~~v~vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~ 396 (502)
.|.. ..+..++..++. .....+.++++|++|+.. ..+.+.++.|+. .+.+.+|+
T Consensus 244 ~l~~-----------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~lPp 311 (445)
T TIGR02915 244 DLPL-----------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIA-EISITIPP 311 (445)
T ss_pred hCCH-----------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhc-cceecCCC
Confidence 8843 244455555432 222233578999999875 356677778886 89999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHH----hcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHH
Q psy2637 397 SKTRKSLLEKLLNKHGNPLSQLELDAVAK----LTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFL 472 (502)
Q Consensus 397 ~~er~~il~~~l~~~~~~l~~~~l~~la~----~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~ 472 (502)
+++|.+++..++..+ +..++. ...+++++.+..|..+.|++|++|+++..++++..+.+..|+.+|++
T Consensus 312 Lr~R~~Di~~l~~~~--------l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~~~~i~~~~l~ 383 (445)
T TIGR02915 312 LRSRDGDAVLLANAF--------LERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQITAEDLG 383 (445)
T ss_pred chhchhhHHHHHHHH--------HHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCcccHHHcC
Confidence 999999888776543 333333 23579999999999999999999999999999998888899999885
No 42
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.90 E-value=6.4e-25 Score=234.98 Aligned_cols=297 Identities=21% Similarity=0.280 Sum_probs=212.3
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhhhccCChhHHHHHHHHHHHH
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVNCYYGSGEKWERAQRLQEKM 190 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~~~~~~~~~~~~~~~~~~~~ 190 (502)
.||+++|+++++++++.++..++++.++. ++.+.+.++++.|+ +|+.||++.+.. .....++ +
T Consensus 56 ~lp~~dgl~~l~~ir~~~~~~pvIvlt~~-------~~~~~~~~a~~~Ga~~~l~KP~~~~~L---~~~i~~~------l 119 (469)
T PRK10923 56 RMPGMDGLALLKQIKQRHPMLPVIIMTAH-------SDLDAAVSAYQQGAFDYLPKPFDIDEA---VALVERA------I 119 (469)
T ss_pred CCCCCCHHHHHHHHHhhCCCCeEEEEECC-------CCHHHHHHHHhcCcceEEecCCcHHHH---HHHHHHH------H
Confidence 48999999999999998888899999988 88899999999999 999999887421 1111111 1
Q ss_pred HHHHHHHHHHhhhhhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCC
Q psy2637 191 KNNLKMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPP 270 (502)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~Gpp 270 (502)
.. ....... . .......+.+++|.+..++.+.+.+ ........+++|+|++
T Consensus 120 ~~-~~~~~~~----------~--------~~~~~~~~~~lig~s~~~~~l~~~~----------~~~~~~~~~vli~Ge~ 170 (469)
T PRK10923 120 SH-YQEQQQP----------R--------NIQVNGPTTDIIGEAPAMQDVFRII----------GRLSRSSISVLINGES 170 (469)
T ss_pred HH-HHHHHhh----------h--------hhhhccccccceecCHHHHHHHHHH----------HHHhccCCeEEEEeCC
Confidence 00 0000000 0 0011124567999999988888776 3344556889999999
Q ss_pred CCcHHHHHHHHHHHc---cCceEEeeccchhhhhh-----hhhHH-------HHHHHHHHHHhcCCeEEEEcCCcchhcc
Q psy2637 271 GNGKTMLARAVATAC---NATFFSISAASLTSKYV-----GQGEK-------LVRALFAMARELQPSIIFIDEVDSVLSE 335 (502)
Q Consensus 271 GtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~-----g~~~~-------~~~~lf~~a~~~~p~iLfLDEId~L~~~ 335 (502)
||||+++|+++|..+ +.||+.++|+.+..... |.... ...+.++.+ ..|+||||||+.|...
T Consensus 171 GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~~ 247 (469)
T PRK10923 171 GTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLD 247 (469)
T ss_pred CCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCHH
Confidence 999999999999987 57999999988754321 11000 001223333 3489999999988432
Q ss_pred cccChhHHHHHHHHHHHHHhccC-------CCCCCCcEEEEEEcCCC-------CCCcHHHHccccceeeecCCCHHHHH
Q psy2637 336 RKEGEHEASRRLKTEFLLEFDGL-------HSNSEHRLLVMGATNRP-------QELDEAVLRRFSKRIYVTLPDSKTRK 401 (502)
Q Consensus 336 ~~~~~~~~~~~~~~~ll~~l~g~-------~~~~~~~v~vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~~~er~ 401 (502)
.+..++..++.. ......+++||+||+.. ..+.+.++.|++ .+.+..|++++|.
T Consensus 248 -----------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~~PpLreR~ 315 (469)
T PRK10923 248 -----------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN-VIRVHLPPLRERR 315 (469)
T ss_pred -----------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhc-ceeecCCCcccch
Confidence 344555554321 11223568999999864 256678888996 8999999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHH----hcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHH
Q psy2637 402 SLLEKLLNKHGNPLSQLELDAVAK----LTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLK 476 (502)
Q Consensus 402 ~il~~~l~~~~~~l~~~~l~~la~----~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~ 476 (502)
+++..++..+ +..++. ...+++++.+..|..+.|++|++|+++.+++++..+.+..|+.+|++..+.
T Consensus 316 ~Di~~l~~~~--------l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~~~~i~~~~l~~~~~ 386 (469)
T PRK10923 316 EDIPRLARHF--------LQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELF 386 (469)
T ss_pred hhHHHHHHHH--------HHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCcccHHHCcHhhh
Confidence 9988777654 233333 234799999999999999999999999999999999899999999976553
No 43
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.89 E-value=1.1e-24 Score=232.17 Aligned_cols=302 Identities=20% Similarity=0.276 Sum_probs=211.4
Q ss_pred cccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhhhccCChhHHHHHHHHHHH
Q psy2637 111 VEMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVNCYYGSGEKWERAQRLQEK 189 (502)
Q Consensus 111 ~~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~~~~~~~~~~~~~~~~~~~ 189 (502)
..||+++|++++++++...+..++++.++. ++.+.++++++.|+ +|+.||++.+.. .. .
T Consensus 56 ~~~p~~~g~~ll~~i~~~~~~~pvI~lt~~-------~~~~~~~~a~~~Ga~d~l~KP~~~~~L----------~~---~ 115 (457)
T PRK11361 56 IRMPEMDGIKALKEMRSHETRTPVILMTAY-------AEVETAVEALRCGAFDYVIKPFDLDEL----------NL---I 115 (457)
T ss_pred CCCCCCCHHHHHHHHHhcCCCCCEEEEeCC-------CCHHHHHHHHHCCccEEEecccCHHHH----------HH---H
Confidence 358999999999999998888899999888 88999999999999 999999876321 11 1
Q ss_pred HHHHHHHHHHHhhhhhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecC
Q psy2637 190 MKNNLKMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGP 269 (502)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~Gp 269 (502)
+........ .......+. ..+ .....+..++|.+..+..+.+.+ ..++....+++++|+
T Consensus 116 i~~~l~~~~----l~~~~~~l~----~~l---~~~~~~~~ii~~S~~~~~~~~~~----------~~~a~~~~~vli~Ge 174 (457)
T PRK11361 116 VQRALQLQS----MKKEIRHLH----QAL---STSWQWGHILTNSPAMMDICKDT----------AKIALSQASVLISGE 174 (457)
T ss_pred Hhhhccccc----cchhhhhhh----hhh---hccccccceecccHHHhHHHHHH----------HHHcCCCcEEEEEcC
Confidence 110000000 000000000 000 11123456889888888887766 444555688999999
Q ss_pred CCCcHHHHHHHHHHHc---cCceEEeeccchhhhhh-----hhhH-------HHHHHHHHHHHhcCCeEEEEcCCcchhc
Q psy2637 270 PGNGKTMLARAVATAC---NATFFSISAASLTSKYV-----GQGE-------KLVRALFAMARELQPSIIFIDEVDSVLS 334 (502)
Q Consensus 270 pGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~-----g~~~-------~~~~~lf~~a~~~~p~iLfLDEId~L~~ 334 (502)
+||||+++|+++|..+ +.+|+.++|..+..... |... ....+.++.+. .++||||||+.|..
T Consensus 175 ~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~ld~i~~l~~ 251 (457)
T PRK11361 175 SGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERAN---EGTLLLDEIGEMPL 251 (457)
T ss_pred CCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECC---CCEEEEechhhCCH
Confidence 9999999999999976 57999999998754321 1100 00012333333 48999999998843
Q ss_pred ccccChhHHHHHHHHHHHHHhcc-------CCCCCCCcEEEEEEcCCC-------CCCcHHHHccccceeeecCCCHHHH
Q psy2637 335 ERKEGEHEASRRLKTEFLLEFDG-------LHSNSEHRLLVMGATNRP-------QELDEAVLRRFSKRIYVTLPDSKTR 400 (502)
Q Consensus 335 ~~~~~~~~~~~~~~~~ll~~l~g-------~~~~~~~~v~vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~~~er 400 (502)
. .+..++..++. .......+++||+||+.. ..+.+.++.|+. .+.+..|++++|
T Consensus 252 ~-----------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~-~~~i~~ppLreR 319 (457)
T PRK11361 252 V-----------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN-VIHLILPPLRDR 319 (457)
T ss_pred H-----------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-cceecCCChhhc
Confidence 2 34445554432 222223568999999864 246667777886 799999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHh----cCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHH
Q psy2637 401 KSLLEKLLNKHGNPLSQLELDAVAKL----TEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLK 476 (502)
Q Consensus 401 ~~il~~~l~~~~~~l~~~~l~~la~~----t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~ 476 (502)
.+.+..++..+ +..++.. ..+++++.+..|..+.|++|++|+++..++++..+.+..|+.+|++..+.
T Consensus 320 ~~di~~l~~~~--------l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~~~~i~~~~l~~~~~ 391 (457)
T PRK11361 320 REDISLLANHF--------LQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIR 391 (457)
T ss_pred hhhHHHHHHHH--------HHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCCCcccHHHChHhhh
Confidence 99887666543 3344432 35799999999999999999999999999999888888999999986653
No 44
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=5.7e-22 Score=198.09 Aligned_cols=235 Identities=16% Similarity=0.237 Sum_probs=168.6
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCC----CCCcceEEecCCCCcHHHHHHHHHHHc-------cCceEEeeccc
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLR----TPSRGLLLFGPPGNGKTMLARAVATAC-------NATFFSISAAS 296 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~----~~~~~vLL~GppGtGKT~lAraia~~~-------~~~fv~i~~s~ 296 (502)
.+++|++.+|+++.+++.+.. .+.+....+ .++.+++|+||||||||++|+++|+.+ ..+++.+++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 479999999999998875532 223333222 234569999999999999999999875 24699999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC
Q psy2637 297 LTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ 376 (502)
Q Consensus 297 l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~ 376 (502)
+.+.+.|........+++.+.+ +||||||++.+...+. ........+..|+..++.. ..+++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~ 172 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDR 172 (287)
T ss_pred HHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 9998888877666777777654 8999999999864322 1223455666777777642 24588888886432
Q ss_pred -----CCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh----c--CCCC-HHHHHHHHHHHHh
Q psy2637 377 -----ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKL----T--EGYS-GSDLTNLAKDAAL 444 (502)
Q Consensus 377 -----~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~----t--~g~s-~~dL~~L~~~a~~ 444 (502)
.+++++.+||+.+|.|++|+.+++.+|+..++.+.+..+++.....+... . ..+. +++++++++.+..
T Consensus 173 ~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 173 MDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999998888887766555443 1 2334 7999999998887
Q ss_pred hhHHhhhhhhhhhhcccCCCcccHHHHH
Q psy2637 445 GPIRELNADQVIKVDLKSVRNISYRDFL 472 (502)
Q Consensus 445 ~airel~~~~~~~v~~~~~~~It~~d~~ 472 (502)
....++.......+...+...|+.+|+.
T Consensus 253 ~~~~r~~~~~~~~~~~~~l~~~~~~d~~ 280 (287)
T CHL00181 253 RQANRIFESGGRVLTKADLVTIEAEDIL 280 (287)
T ss_pred HHHHHHHcCCCCCCCHHHHhCCCHHHHh
Confidence 7766664332222222233455555554
No 45
>PRK15115 response regulator GlrR; Provisional
Probab=99.88 E-value=1.6e-23 Score=222.57 Aligned_cols=291 Identities=20% Similarity=0.263 Sum_probs=204.1
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhhhccCChhHHHHHHHHHHHH
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVNCYYGSGEKWERAQRLQEKM 190 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~~~~~~~~~~~~~~~~~~~~ 190 (502)
.||+++|++++++++...+..++++.++. ++.+.++++++.|+ +|+.||++.+. +. ..+
T Consensus 58 ~lp~~~g~~ll~~l~~~~~~~pvIvlt~~-------~~~~~~~~a~~~Ga~~~l~KP~~~~~----------L~---~~l 117 (444)
T PRK15115 58 RMDEMDGMQLFAEIQKVQPGMPVIILTAH-------GSIPDAVAATQQGVFSFLTKPVDRDA----------LY---KAI 117 (444)
T ss_pred CCCCCCHHHHHHHHHhcCCCCcEEEEECC-------CCHHHHHHHHhcChhhhccCCCCHHH----------HH---HHH
Confidence 48999999999999998888899998887 88999999999999 99999987731 11 111
Q ss_pred HHHHHHHHHHhhhhhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCC
Q psy2637 191 KNNLKMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPP 270 (502)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~Gpp 270 (502)
.......... . . ......++|.+..++.+.+.+ ..+.....+++|+|++
T Consensus 118 ~~~~~~~~~~----~----------------~-~~~~~~lig~s~~~~~~~~~~----------~~~a~~~~~vli~Ge~ 166 (444)
T PRK15115 118 DDALEQSAPA----T----------------D-ERWREAIVTRSPLMLRLLEQA----------RMVAQSDVSVLINGQS 166 (444)
T ss_pred HHHHHhhhcc----c----------------c-cchhhcccccCHHHHHHHHHH----------HhhccCCCeEEEEcCC
Confidence 1111100000 0 0 000124677777777666655 3333446789999999
Q ss_pred CCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhh-----hH-------HHHHHHHHHHHhcCCeEEEEcCCcchhcc
Q psy2637 271 GNGKTMLARAVATAC---NATFFSISAASLTSKYVGQ-----GE-------KLVRALFAMARELQPSIIFIDEVDSVLSE 335 (502)
Q Consensus 271 GtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~-----~~-------~~~~~lf~~a~~~~p~iLfLDEId~L~~~ 335 (502)
|||||++|+++|+.+ +.+|+.++|..+.....+. .. ....++++.+ ..++|||||||.|...
T Consensus 167 GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~ 243 (444)
T PRK15115 167 GTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDMPAP 243 (444)
T ss_pred cchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccCCHH
Confidence 999999999999987 5799999999875432211 00 0001223333 3489999999988433
Q ss_pred cccChhHHHHHHHHHHHHHhcc-------CCCCCCCcEEEEEEcCCC-------CCCcHHHHccccceeeecCCCHHHHH
Q psy2637 336 RKEGEHEASRRLKTEFLLEFDG-------LHSNSEHRLLVMGATNRP-------QELDEAVLRRFSKRIYVTLPDSKTRK 401 (502)
Q Consensus 336 ~~~~~~~~~~~~~~~ll~~l~g-------~~~~~~~~v~vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~~~er~ 401 (502)
.+..++..++. .......++++|+||+.+ ..+.+.++.|++ .+.+..|++++|.
T Consensus 244 -----------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~-~~~i~lPpLr~R~ 311 (444)
T PRK15115 244 -----------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLN-VVSLKIPALAERT 311 (444)
T ss_pred -----------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhc-eeeecCCChHhcc
Confidence 34445554432 112223478999999864 145566666886 8999999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHH----hcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHH
Q psy2637 402 SLLEKLLNKHGNPLSQLELDAVAK----LTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLK 476 (502)
Q Consensus 402 ~il~~~l~~~~~~l~~~~l~~la~----~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~ 476 (502)
+.+..++..+ +..++. ...+++++.+..|..+.|++|++|+++.+++++..+.+..|+.++++..+.
T Consensus 312 eDi~~l~~~~--------l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~~i~~~~l~~~~~ 382 (444)
T PRK15115 312 EDIPLLANHL--------LRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALE 382 (444)
T ss_pred ccHHHHHHHH--------HHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCccChhhhhhhhc
Confidence 9887766543 233332 234799999999999999999999999999999888888999999876653
No 46
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.88 E-value=2e-21 Score=194.25 Aligned_cols=212 Identities=19% Similarity=0.258 Sum_probs=154.0
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCC----CCCcceEEecCCCCcHHHHHHHHHHHc-------cCceEEeeccch
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLR----TPSRGLLLFGPPGNGKTMLARAVATAC-------NATFFSISAASL 297 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~----~~~~~vLL~GppGtGKT~lAraia~~~-------~~~fv~i~~s~l 297 (502)
+++|++.+|+++.+++.+. ..++.....+ .+..+++|+||||||||++|+++|+.+ ..+|+.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~-~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALL-LVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHHH-HHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 5899999999999877653 2333333222 245689999999999999999988876 247999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC--
Q psy2637 298 TSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP-- 375 (502)
Q Consensus 298 ~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~-- 375 (502)
.+.+.|.....+..+|+.+.+ ++|||||++.|.+.+. ........+..|+..++.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~~ 172 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQ----RDDLVVILAGYKDRM 172 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHH
Confidence 888888877777788887755 8999999999854322 1223445666777777642 2468888887653
Q ss_pred C---CCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcC-----C--CCHHHHHHHHHHHHhh
Q psy2637 376 Q---ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTE-----G--YSGSDLTNLAKDAALG 445 (502)
Q Consensus 376 ~---~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~-----g--~s~~dL~~L~~~a~~~ 445 (502)
+ .+++++.+||...|.|++++.+++.+|+..++.+.+..+++..+..+..... . -+.+++++++..+...
T Consensus 173 ~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 173 DSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 2 3589999999989999999999999999999998877777766665554321 1 1345566666555554
Q ss_pred hHHhh
Q psy2637 446 PIREL 450 (502)
Q Consensus 446 airel 450 (502)
...++
T Consensus 253 ~~~r~ 257 (284)
T TIGR02880 253 QANRL 257 (284)
T ss_pred HHHHH
Confidence 44444
No 47
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.88 E-value=4.9e-23 Score=220.02 Aligned_cols=298 Identities=20% Similarity=0.285 Sum_probs=209.2
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhhhccCChhHHHHHHHHHHHH
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVNCYYGSGEKWERAQRLQEKM 190 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~~~~~~~~~~~~~~~~~~~~ 190 (502)
.||+++|++++++++...+..++++.++. .+.+.++++++.|+ +|+.||+..+.. .....++.
T Consensus 51 ~~p~~~g~~ll~~l~~~~~~~~vIvlt~~-------~~~~~~~~a~~~Ga~~~l~KP~~~~~L---~~~i~~~l------ 114 (463)
T TIGR01818 51 RMPGEDGLDLLPQIKKRHPQLPVIVMTAH-------SDLDTAVAAYQRGAFEYLPKPFDLDEA---VTLVERAL------ 114 (463)
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEEeCC-------CCHHHHHHHHHcCcceeecCCCCHHHH---HHHHHHHH------
Confidence 58999999999999998888889998888 78889999999999 999999876321 11111110
Q ss_pred HHHHHHHHHHhhhhhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCC
Q psy2637 191 KNNLKMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPP 270 (502)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~Gpp 270 (502)
........ ... ..........++|.+..++.+.+.+ ........++++.|++
T Consensus 115 ----~~~~~~~~-------~~~-------~~~~~~~~~~lig~s~~~~~v~~~i----------~~~a~~~~~vli~Ge~ 166 (463)
T TIGR01818 115 ----AHAQEQVA-------LPA-------DAGEAEDSAELIGEAPAMQEVFRAI----------GRLSRSDITVLINGES 166 (463)
T ss_pred ----HHHHHHHh-------hhh-------hhhccccccceeecCHHHHHHHHHH----------HHHhCcCCeEEEECCC
Confidence 00000000 000 0000112346889988888888776 2333446789999999
Q ss_pred CCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhh-----hHH-------HHHHHHHHHHhcCCeEEEEcCCcchhcc
Q psy2637 271 GNGKTMLARAVATAC---NATFFSISAASLTSKYVGQ-----GEK-------LVRALFAMARELQPSIIFIDEVDSVLSE 335 (502)
Q Consensus 271 GtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~-----~~~-------~~~~lf~~a~~~~p~iLfLDEId~L~~~ 335 (502)
||||+++|+++|... +.||+.+||+.+....... ... ...+.++.+ .+++||||||+.|...
T Consensus 167 GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~ei~~l~~~ 243 (463)
T TIGR01818 167 GTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQA---DGGTLFLDEIGDMPLD 243 (463)
T ss_pred CCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEEC---CCCeEEEEchhhCCHH
Confidence 999999999999986 5799999999875432211 000 001122222 3489999999988432
Q ss_pred cccChhHHHHHHHHHHHHHhccC-------CCCCCCcEEEEEEcCCC-------CCCcHHHHccccceeeecCCCHHHHH
Q psy2637 336 RKEGEHEASRRLKTEFLLEFDGL-------HSNSEHRLLVMGATNRP-------QELDEAVLRRFSKRIYVTLPDSKTRK 401 (502)
Q Consensus 336 ~~~~~~~~~~~~~~~ll~~l~g~-------~~~~~~~v~vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~~~er~ 401 (502)
.+..++..++.. ......+++||++|+.. ..+.+.++.|+. .+.+.+|++++|.
T Consensus 244 -----------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLr~R~ 311 (463)
T TIGR01818 244 -----------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLN-VIRIHLPPLRERR 311 (463)
T ss_pred -----------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhC-cceecCCCcccch
Confidence 344455544321 12223468999999864 245567777886 7899999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHh----cCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHH
Q psy2637 402 SLLEKLLNKHGNPLSQLELDAVAKL----TEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLK 476 (502)
Q Consensus 402 ~il~~~l~~~~~~l~~~~l~~la~~----t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~ 476 (502)
+.+..++..+ +..++.. ..+++++.+..|..+.|++|+||+++..++++..+.+..|+.+|++..+.
T Consensus 312 ~Di~~l~~~~--------l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~~~i~~~~l~~~~~ 382 (463)
T TIGR01818 312 EDIPRLARHF--------LALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGDEVLVSDLPAELA 382 (463)
T ss_pred hhHHHHHHHH--------HHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCcccHHhchHHHh
Confidence 9988777644 2333332 35799999999999999999999999999999988888999999987663
No 48
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.87 E-value=5.9e-23 Score=217.97 Aligned_cols=297 Identities=19% Similarity=0.254 Sum_probs=205.9
Q ss_pred cccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhhhccCChhHHHHHHHHHHH
Q psy2637 111 VEMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVNCYYGSGEKWERAQRLQEK 189 (502)
Q Consensus 111 ~~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~~~~~~~~~~~~~~~~~~~ 189 (502)
..||+++|+++++++++..+.+++++.+++ ++.+.++++++.|+ +|+.||++.+.. .. .
T Consensus 57 ~~m~~~~G~~~~~~ir~~~~~~~vi~lt~~-------~~~~~~~~a~~~ga~~~l~Kp~~~~~L---~~----------~ 116 (441)
T PRK10365 57 VRMAEMDGIATLKEIKALNPAIPVLIMTAY-------SSVETAVEALKTGALDYLIKPLDFDNL---QA----------T 116 (441)
T ss_pred CCCCCCCHHHHHHHHHhhCCCCeEEEEECC-------CCHHHHHHHHHhhhHHHhcCCCCHHHH---HH----------H
Confidence 358999999999999999899999999988 88899999999999 999999876321 11 1
Q ss_pred HHHHHHHHHHHhhhhhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecC
Q psy2637 190 MKNNLKMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGP 269 (502)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~Gp 269 (502)
+........... .... . ... ....++|.+..++.+...+ ..+.....+++++|+
T Consensus 117 l~~~l~~~~~~~------~~~~-----~----~~~-~~~~lig~s~~~~~~~~~i----------~~~~~~~~~vli~ge 170 (441)
T PRK10365 117 LEKALAHTHSID------AETP-----A----VTA-SQFGMVGKSPAMQHLLSEI----------ALVAPSEATVLIHGD 170 (441)
T ss_pred HHHHHHHHHHHH------Hhhh-----h----hhc-cccceEecCHHHHHHHHHH----------hhccCCCCeEEEEec
Confidence 111110000000 0000 0 000 1124677777777776665 333455688999999
Q ss_pred CCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhh-----hHH-------HHHHHHHHHHhcCCeEEEEcCCcchhc
Q psy2637 270 PGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQ-----GEK-------LVRALFAMARELQPSIIFIDEVDSVLS 334 (502)
Q Consensus 270 pGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~-----~~~-------~~~~lf~~a~~~~p~iLfLDEId~L~~ 334 (502)
+||||+++|+++|..+ +.||+.++|+.+.....+. ... ...+++..+ .+|+||||||+.|.+
T Consensus 171 ~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ldei~~l~~ 247 (441)
T PRK10365 171 SGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISP 247 (441)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeEC---CCCEEEEeccccCCH
Confidence 9999999999999876 5799999999875432211 000 001222333 358999999999843
Q ss_pred ccccChhHHHHHHHHHHHHHhcc-------CCCCCCCcEEEEEEcCCC-------CCCcHHHHccccceeeecCCCHHHH
Q psy2637 335 ERKEGEHEASRRLKTEFLLEFDG-------LHSNSEHRLLVMGATNRP-------QELDEAVLRRFSKRIYVTLPDSKTR 400 (502)
Q Consensus 335 ~~~~~~~~~~~~~~~~ll~~l~g-------~~~~~~~~v~vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~~~er 400 (502)
. .+..++..++. .......++++|+||+.+ ..+.+.++.|+. .+.+..|++++|
T Consensus 248 ~-----------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~-~~~i~~ppLreR 315 (441)
T PRK10365 248 M-----------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN-VVAIEVPSLRQR 315 (441)
T ss_pred H-----------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-cceecCCChhhc
Confidence 3 33445554432 122223468899998764 235556666785 799999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHH----hcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHH
Q psy2637 401 KSLLEKLLNKHGNPLSQLELDAVAK----LTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLK 476 (502)
Q Consensus 401 ~~il~~~l~~~~~~l~~~~l~~la~----~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~ 476 (502)
.+.+..++..+ +..++. ...+++++.+..|+.+.|++|+|++.+..++++....+..|+.+|++..+.
T Consensus 316 ~~Di~~l~~~~--------l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~~~i~~~~l~~~~~ 387 (441)
T PRK10365 316 REDIPLLAGHF--------LQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIA 387 (441)
T ss_pred chhHHHHHHHH--------HHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCccchHhCchhhc
Confidence 99888776544 333333 234699999999999999999999999999999888888999999986653
No 49
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=8.9e-21 Score=187.63 Aligned_cols=213 Identities=16% Similarity=0.230 Sum_probs=156.1
Q ss_pred cccccChHHHHHHHHHHHhCcCCChhhhh-cC--CCCCcceEEecCCCCcHHHHHHHHHHHc-------cCceEEeeccc
Q psy2637 227 WQDIAGQEVAKQALHEMVILPSLRPELFT-GL--RTPSRGLLLFGPPGNGKTMLARAVATAC-------NATFFSISAAS 296 (502)
Q Consensus 227 ~~~iiG~~~~~~~l~~~v~~~~~~~~l~~-~~--~~~~~~vLL~GppGtGKT~lAraia~~~-------~~~fv~i~~s~ 296 (502)
+++++|++.+|+.|.+.+.+......... +. .....+++|+||||||||++|+++|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 46799999999999988766644322111 22 2344689999999999999999999874 35788999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC
Q psy2637 297 LTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ 376 (502)
Q Consensus 297 l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~ 376 (502)
+.+.+.|+....+..+|+.+.. +||||||+|.|.... ........+..++..++.. ..++++|+++...+
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~~---~VL~IDE~~~L~~~~---~~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~~~ 154 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKALG---GVLFIDEAYSLARGG---EKDFGKEAIDTLVKGMEDN----RNEFVLILAGYSDE 154 (261)
T ss_pred hhhhhccchHHHHHHHHHhccC---CEEEEechhhhccCC---ccchHHHHHHHHHHHHhcc----CCCEEEEecCCcch
Confidence 9999999988888888887754 899999999996321 1122344556677766543 23466666654432
Q ss_pred -----CCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcC---------CCCHHHHHHHHHHH
Q psy2637 377 -----ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTE---------GYSGSDLTNLAKDA 442 (502)
Q Consensus 377 -----~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~---------g~s~~dL~~L~~~a 442 (502)
.+++++.+||+..+.|+.++.+++.++++.++...+..+++..+..++.... .-+++.+++++..|
T Consensus 155 ~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a 234 (261)
T TIGR02881 155 MDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKA 234 (261)
T ss_pred hHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 4778999999878999999999999999999998877788887777654321 13457777777776
Q ss_pred HhhhHHh
Q psy2637 443 ALGPIRE 449 (502)
Q Consensus 443 ~~~aire 449 (502)
......+
T Consensus 235 ~~~~~~r 241 (261)
T TIGR02881 235 IRRQAVR 241 (261)
T ss_pred HHHHHHH
Confidence 6544433
No 50
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.85 E-value=1.7e-21 Score=198.49 Aligned_cols=209 Identities=19% Similarity=0.246 Sum_probs=154.5
Q ss_pred ccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhh---
Q psy2637 230 IAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVG--- 303 (502)
Q Consensus 230 iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g--- 303 (502)
++|.+.+++.+.+.+ ..++....+|||+|++||||+++|++||..+ +.||+.+||+.+.....+
T Consensus 1 liG~S~~m~~~~~~~----------~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQV----------SRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHH----------HHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 578888999988887 5556667899999999999999999999877 479999999987543221
Q ss_pred --hh-------HHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc-------CCCCCCCcEE
Q psy2637 304 --QG-------EKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG-------LHSNSEHRLL 367 (502)
Q Consensus 304 --~~-------~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g-------~~~~~~~~v~ 367 (502)
.. .....++++.+.+ ++||||||+.|.. .++..|+..++. .......+++
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~g---GtL~Ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERADG---GTLFLDELATASL-----------LVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhCCC---CEEEeCChHhCCH-----------HHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 10 0011234555544 8999999998833 344455555532 2223346789
Q ss_pred EEEEcCCC-------CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHH----hc-CCCCHHHH
Q psy2637 368 VMGATNRP-------QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAK----LT-EGYSGSDL 435 (502)
Q Consensus 368 vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~----~t-~g~s~~dL 435 (502)
+|++|+.. ..+.+.++.|++ ++.+..|++++|.+++..++..+ +..++. .. .+++++.+
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLReR~eDI~~L~~~f--------l~~~~~~~~~~~~~~ls~~a~ 207 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLRERQEDIMLLAEHF--------AIRMARELGLPLFPGFTPQAR 207 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchhhhhhhHHHHHHHH--------HHHHHHHhCCCCCCCcCHHHH
Confidence 99999864 245677788996 78999999999999998877644 223332 23 57999999
Q ss_pred HHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHH
Q psy2637 436 TNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDF 471 (502)
Q Consensus 436 ~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~ 471 (502)
..|.++.|++|+||+++.+++++..+....++.+|+
T Consensus 208 ~~L~~y~WPGNvrEL~n~i~~~~~~~~~~~~~~~~~ 243 (329)
T TIGR02974 208 EQLLEYHWPGNVRELKNVVERSVYRHGLEEAPIDEI 243 (329)
T ss_pred HHHHhCCCCchHHHHHHHHHHHHHhCCCCccchhhc
Confidence 999999999999999999999888776556666653
No 51
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.85 E-value=3.4e-20 Score=174.96 Aligned_cols=194 Identities=20% Similarity=0.300 Sum_probs=128.1
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKY 301 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~ 301 (502)
-.|.++++++||+..+..+.-++..... -..+..++|||||||+|||++|+.||++++.+|..+++..+...
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~-------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~- 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKK-------RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA- 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHC-------TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC-
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHh-------cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH-
Confidence 5677999999999999998776632211 12345789999999999999999999999999988877544321
Q ss_pred hhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCC------CCC--------CCcEE
Q psy2637 302 VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLH------SNS--------EHRLL 367 (502)
Q Consensus 302 ~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~------~~~--------~~~v~ 367 (502)
+. +..++... ....|||||||+.+. ...+..|+..|+... ..+ -.++.
T Consensus 90 -~d----l~~il~~l--~~~~ILFIDEIHRln-----------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 90 -GD----LAAILTNL--KEGDILFIDEIHRLN-----------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp -HH----HHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred -HH----HHHHHHhc--CCCcEEEEechhhcc-----------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 11 12233222 234799999999883 223444555554221 010 13578
Q ss_pred EEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2637 368 VMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDA 442 (502)
Q Consensus 368 vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a 442 (502)
+|+||++...+.+++++||..+..+..++.++..+|+...+...+..+++....++|..+.| +|+-..+|+++.
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 99999999999999999998777899999999999999999999999999999999999998 565555565543
No 52
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.84 E-value=1.6e-20 Score=201.36 Aligned_cols=217 Identities=18% Similarity=0.215 Sum_probs=160.0
Q ss_pred CCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh
Q psy2637 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY 301 (502)
Q Consensus 225 ~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~ 301 (502)
..|++++|.++.++.+.+.+ ..++..+.+|||+|++||||+++|++||..+ +.||+.+||+.+....
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i----------~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALV----------RLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHH----------HHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 46889999999999999888 5556667899999999999999999999876 5799999999886432
Q ss_pred h-----h--------hhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc-------CCCC
Q psy2637 302 V-----G--------QGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG-------LHSN 361 (502)
Q Consensus 302 ~-----g--------~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g-------~~~~ 361 (502)
. | .......++|+.+.+ ++||||||+.|.. .++..|+..++. ....
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~-----------~~Q~~Ll~~L~~~~~~r~g~~~~ 344 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPL-----------PLQTRLLRVLEEREVVRVGGTEP 344 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCH-----------HHHHHHHHHHhcCcEEecCCCce
Confidence 2 1 111112456666655 8999999998833 344555555532 2222
Q ss_pred CCCcEEEEEEcCCC--C-----CCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh-cCCCCHH
Q psy2637 362 SEHRLLVMGATNRP--Q-----ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKL-TEGYSGS 433 (502)
Q Consensus 362 ~~~~v~vIaaTN~~--~-----~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~-t~g~s~~ 433 (502)
.+.++++|++|+.+ + .+.+.++.|++ .+.+.+|++++|.+++..++..+ +..++.. .-+++++
T Consensus 345 ~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~f--------l~~~~~~~~~~~~~~ 415 (526)
T TIGR02329 345 VPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEY--------LVQAAAALRLPDSEA 415 (526)
T ss_pred eeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHH--------HHHHHHHcCCCCCHH
Confidence 34568999999875 2 34445556886 79999999999999988776543 2222221 2358888
Q ss_pred HHHH-------HHHHHHhhhHHhhhhhhhhhhccc---CCCcccHHHHHHH
Q psy2637 434 DLTN-------LAKDAALGPIRELNADQVIKVDLK---SVRNISYRDFLES 474 (502)
Q Consensus 434 dL~~-------L~~~a~~~airel~~~~~~~v~~~---~~~~It~~d~~~a 474 (502)
.+.. |.++.|++|+||+++..++.+... ....|+.+|+...
T Consensus 416 a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 416 AAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 8888 999999999999999999988754 3467999987543
No 53
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.83 E-value=2.3e-21 Score=198.25 Aligned_cols=213 Identities=23% Similarity=0.297 Sum_probs=159.9
Q ss_pred CCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc----cCceEEeeccchhhh
Q psy2637 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC----NATFFSISAASLTSK 300 (502)
Q Consensus 225 ~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~i~~s~l~~~ 300 (502)
..+++++|.+...+++.+.+ ...++.+.+|||+|++||||+.+|+.||..+ +.||+.+||+.+...
T Consensus 75 ~~~~~LIG~~~~~~~~~eqi----------k~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en 144 (403)
T COG1221 75 EALDDLIGESPSLQELREQI----------KAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSEN 144 (403)
T ss_pred hhhhhhhccCHHHHHHHHHH----------HhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcC
Confidence 35789999999999999888 4456678899999999999999999999765 579999999988743
Q ss_pred -------------hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc-------cCCC
Q psy2637 301 -------------YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD-------GLHS 360 (502)
Q Consensus 301 -------------~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~-------g~~~ 360 (502)
|.|.. ....++|+.|.+ |+||||||+.|.+. .+..+++.++ |...
T Consensus 145 ~~~~eLFG~~kGaftGa~-~~k~Glfe~A~G---GtLfLDEI~~LP~~-----------~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 145 LQEAELFGHEKGAFTGAQ-GGKAGLFEQANG---GTLFLDEIHRLPPE-----------GQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred HHHHHHhccccceeeccc-CCcCchheecCC---CEEehhhhhhCCHh-----------HHHHHHHHHHcCceEecCCCC
Confidence 34422 223678888887 99999999988443 3445555554 3344
Q ss_pred CCCCcEEEEEEcCCC--CCCcH--HHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHH----hcCCCCH
Q psy2637 361 NSEHRLLVMGATNRP--QELDE--AVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAK----LTEGYSG 432 (502)
Q Consensus 361 ~~~~~v~vIaaTN~~--~~l~~--~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~----~t~g~s~ 432 (502)
....+|++|+||+.. +.+-. .+.+|.. .+.+++|+++||.+.+..++..+ +...++ .....++
T Consensus 210 ~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~-~~~I~LPpLrER~~Di~~L~e~F--------l~~~~~~l~~~~~~~~~ 280 (403)
T COG1221 210 PRPVDVRLICATTEDLEEAVLAGADLTRRLN-ILTITLPPLRERKEDILLLAEHF--------LKSEARRLGLPLSVDSP 280 (403)
T ss_pred CcCCCceeeeccccCHHHHHHhhcchhhhhc-CceecCCChhhchhhHHHHHHHH--------HHHHHHHcCCCCCCCCH
Confidence 556789999999863 44444 6666664 78999999999998887766543 233332 2234567
Q ss_pred HHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHH
Q psy2637 433 SDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDF 471 (502)
Q Consensus 433 ~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~ 471 (502)
+.++.|..|.|+||+||++|.+++.+.......+..+|.
T Consensus 281 ~a~~~L~~y~~pGNirELkN~Ve~~~~~~~~~~~~~~~~ 319 (403)
T COG1221 281 EALRALLAYDWPGNIRELKNLVERAVAQASGEGQDLEDL 319 (403)
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHhccccCCcccc
Confidence 899999999999999999999999887765544544433
No 54
>KOG0742|consensus
Probab=99.83 E-value=4.3e-19 Score=177.01 Aligned_cols=209 Identities=27% Similarity=0.425 Sum_probs=154.0
Q ss_pred CCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhh
Q psy2637 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVG 303 (502)
Q Consensus 224 ~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g 303 (502)
...++++|-.....+.|.++....... ..-..+-++||+|||||||||++|+.||..++..+-.+.++++. ....
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~aTaNT----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~ 425 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIATANT----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGA 425 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHHhccc----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccch
Confidence 334666666666666666654322110 01113457899999999999999999999999887666665543 2223
Q ss_pred hhHHHHHHHHHHHHhcCCe-EEEEcCCcchhccccc-ChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHH
Q psy2637 304 QGEKLVRALFAMARELQPS-IIFIDEVDSVLSERKE-GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEA 381 (502)
Q Consensus 304 ~~~~~~~~lf~~a~~~~p~-iLfLDEId~L~~~~~~-~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~ 381 (502)
..-..+..+|+++..++.| +|||||+|.++..+.. ..++..+..++.||..-. ....+++++.+||+|..+|.+
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG----dqSrdivLvlAtNrpgdlDsA 501 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----DQSRDIVLVLATNRPGDLDSA 501 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc----ccccceEEEeccCCccchhHH
Confidence 3445678999999887655 7899999999877653 455666666776665332 223468999999999999999
Q ss_pred HHccccceeeecCCCHHHHHHHHHHHHhhcCCC--------------------------CCHHHHHHHHHhcCCCCHHHH
Q psy2637 382 VLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNP--------------------------LSQLELDAVAKLTEGYSGSDL 435 (502)
Q Consensus 382 l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~--------------------------l~~~~l~~la~~t~g~s~~dL 435 (502)
+-+|++.+++|++|..+||..++..++.++-.. ..+.-+.+.|+.++||||++|
T Consensus 502 V~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREi 581 (630)
T KOG0742|consen 502 VNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREI 581 (630)
T ss_pred HHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHH
Confidence 999999999999999999999999999874211 223456788999999999999
Q ss_pred HHHHHH
Q psy2637 436 TNLAKD 441 (502)
Q Consensus 436 ~~L~~~ 441 (502)
..|+.-
T Consensus 582 akLva~ 587 (630)
T KOG0742|consen 582 AKLVAS 587 (630)
T ss_pred HHHHHH
Confidence 988763
No 55
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.82 E-value=4.3e-20 Score=188.23 Aligned_cols=213 Identities=19% Similarity=0.236 Sum_probs=156.7
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh-
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY- 301 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~- 301 (502)
.+++++|.+..++.+.+.+ ..++..+.+|||+|++||||+++|++||..+ +.||+.+||+.+....
T Consensus 4 ~~~~liG~S~~~~~~~~~i----------~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQV----------SRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHH----------HHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 4578999999999999888 5556667899999999999999999999877 4799999999875321
Q ss_pred ----hhhhH-------HHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc-------CCCCCC
Q psy2637 302 ----VGQGE-------KLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG-------LHSNSE 363 (502)
Q Consensus 302 ----~g~~~-------~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g-------~~~~~~ 363 (502)
.|... ....+.++.+. .++|||||||.|.. ..+..++..++. ......
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPM-----------LVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceee
Confidence 11110 00123444444 38999999998843 244455555532 112223
Q ss_pred CcEEEEEEcCCC-------CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh-----cCCCC
Q psy2637 364 HRLLVMGATNRP-------QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKL-----TEGYS 431 (502)
Q Consensus 364 ~~v~vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~-----t~g~s 431 (502)
.+++||++|+.. ..+.+.++.||. .+.+..|++++|.+++..++..+ +..++.. ..+++
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~f--------l~~~~~~~~~~~~~~~s 210 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHF--------AIQMCRELGLPLFPGFT 210 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHH--------HHHHHHHhCCCCCCCCC
Confidence 468999999864 356677888996 78999999999999988777543 2223322 25799
Q ss_pred HHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHH
Q psy2637 432 GSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDF 471 (502)
Q Consensus 432 ~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~ 471 (502)
++.+..|.++.|++|++|+++..++++..+.+..++.+++
T Consensus 211 ~~al~~L~~y~WPGNvrEL~~vl~~a~~~~~~~~~~~~~l 250 (326)
T PRK11608 211 ERARETLLNYRWPGNIRELKNVVERSVYRHGTSEYPLDNI 250 (326)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCCCCchhhc
Confidence 9999999999999999999999999887766656655554
No 56
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=1.6e-19 Score=158.69 Aligned_cols=130 Identities=37% Similarity=0.663 Sum_probs=114.0
Q ss_pred eEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcC-CeEEEEcCCcchhcccccChhH
Q psy2637 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQ-PSIIFIDEVDSVLSERKEGEHE 342 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~-p~iLfLDEId~L~~~~~~~~~~ 342 (502)
|||+||||||||++|+.+|+.++.+++.+++..+.+.+.+.....+..+|..+.... |+||||||+|.+.+..+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999998888999999999999998887 9999999999999887444556
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHH-ccccceeeecC
Q psy2637 343 ASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVL-RRFSKRIYVTL 394 (502)
Q Consensus 343 ~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~-rRf~~~I~i~~ 394 (502)
....+...++..++..... ..+++||+|||.++.+++.+. +||+..+++++
T Consensus 81 ~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 6677788888888876554 346999999999999999999 99998888764
No 57
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.82 E-value=7.9e-21 Score=203.56 Aligned_cols=215 Identities=20% Similarity=0.254 Sum_probs=154.0
Q ss_pred CCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHH--------c---cCceEEee
Q psy2637 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATA--------C---NATFFSIS 293 (502)
Q Consensus 225 ~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~--------~---~~~fv~i~ 293 (502)
..|++++|.+..++.+.+.+ ..++..+.+|||+||+||||+++|++||.. + +.||+.+|
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i----------~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTI----------LLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHH----------HHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 36889999999999999987 555566789999999999999999999998 4 67999999
Q ss_pred ccchhhhhh-----h--------hhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc---
Q psy2637 294 AASLTSKYV-----G--------QGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG--- 357 (502)
Q Consensus 294 ~s~l~~~~~-----g--------~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g--- 357 (502)
|+.+..... | .......++|+.+.+ |+||||||+.|.. .++..|+..++.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~-----------~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPL-----------PLQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCH-----------HHHHHHHhhhhcCeE
Confidence 998864322 1 111112356776665 8999999998833 345555555532
Q ss_pred ----CCCCCCCcEEEEEEcCCC--C-----CCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHH-
Q psy2637 358 ----LHSNSEHRLLVMGATNRP--Q-----ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAK- 425 (502)
Q Consensus 358 ----~~~~~~~~v~vIaaTN~~--~-----~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~- 425 (502)
.....+.++++|++||.. . .+.+.++.|++ ++.+.+|++++|.+++..++..+ +...+.
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~-~~~I~lPPLReR~eDI~~L~~~f--------l~~~~~~ 422 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLS-ILRLQLPPLRERVADILPLAESF--------LKQSLAA 422 (538)
T ss_pred EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhc-CCeecCCChhhchhHHHHHHHHH--------HHHHHHH
Confidence 223334678999999875 2 24445666886 89999999999999887776543 122111
Q ss_pred hcCCCCH-------HHHHHHHHHHHhhhHHhhhhhhhhhhcccC---CCcccHHHHH
Q psy2637 426 LTEGYSG-------SDLTNLAKDAALGPIRELNADQVIKVDLKS---VRNISYRDFL 472 (502)
Q Consensus 426 ~t~g~s~-------~dL~~L~~~a~~~airel~~~~~~~v~~~~---~~~It~~d~~ 472 (502)
....+++ +.+..|..|.|++|+||++|.+++.+.... ...|+.+++.
T Consensus 423 ~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 423 LSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred cCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 1112344 445789999999999999999999876543 2467777764
No 58
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.82 E-value=8.5e-20 Score=196.87 Aligned_cols=216 Identities=20% Similarity=0.249 Sum_probs=161.9
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhh
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYV 302 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~ 302 (502)
.+.+++|.+..++.+.+.+ ..++..+.+|||+|++||||+++|++||..+ +.||+.+||+.+.....
T Consensus 185 ~~~~iig~s~~~~~~~~~i----------~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEI----------EVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHH----------HHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 4678999999999999988 5666778999999999999999999999987 57999999998864321
Q ss_pred -----hhhH-------HHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc-------CCCCCC
Q psy2637 303 -----GQGE-------KLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG-------LHSNSE 363 (502)
Q Consensus 303 -----g~~~-------~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g-------~~~~~~ 363 (502)
|... ....+.|+.+.+ ++|||||||.|.. ..+..|+..++. ......
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~g---GtL~ldeI~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELADG---GTLFLDEIGELPL-----------ALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcCC---CEEEecChhhCCH-----------HHHHHHHHHHhcCCEeeCCCCccee
Confidence 1110 001234555544 8999999998843 244455555532 122233
Q ss_pred CcEEEEEEcCCC-------CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHH----hcCCCCH
Q psy2637 364 HRLLVMGATNRP-------QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAK----LTEGYSG 432 (502)
Q Consensus 364 ~~v~vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~----~t~g~s~ 432 (502)
.+++||++|+.. ..+.+.++.|++ ++.+.+|++++|.+++..++..+ +..++. ...++++
T Consensus 321 ~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~-~~~i~lPpLreR~eDI~~L~~~f--------l~~~~~~~~~~~~~~s~ 391 (509)
T PRK05022 321 VDVRVIAATNRDLREEVRAGRFRADLYHRLS-VFPLSVPPLRERGDDVLLLAGYF--------LEQNRARLGLRSLRLSP 391 (509)
T ss_pred cceEEEEecCCCHHHHHHcCCccHHHHhccc-ccEeeCCCchhchhhHHHHHHHH--------HHHHHHHcCCCCCCCCH
Confidence 578999999874 246677777986 89999999999999987776543 333433 3347999
Q ss_pred HHHHHHHHHHHhhhHHhhhhhhhhhhcccCCC------cccHHHHHHH
Q psy2637 433 SDLTNLAKDAALGPIRELNADQVIKVDLKSVR------NISYRDFLES 474 (502)
Q Consensus 433 ~dL~~L~~~a~~~airel~~~~~~~v~~~~~~------~It~~d~~~a 474 (502)
+.+..|.++.|++|+||+++.+++++..+... .|+.+|++..
T Consensus 392 ~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~~~ 439 (509)
T PRK05022 392 AAQAALLAYDWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLDLP 439 (509)
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcCcc
Confidence 99999999999999999999999988776654 5777777643
No 59
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.81 E-value=1.7e-20 Score=184.38 Aligned_cols=224 Identities=21% Similarity=0.265 Sum_probs=173.7
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLT 298 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~ 298 (502)
.....|+.+++.+..++.+.+.. .+++.-..++||.|++||||.++|++.|..+ ..||+.+||+.++
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA----------~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQA----------QKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHH----------HHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 34557899999999999888776 5556667899999999999999999999987 6899999999998
Q ss_pred hhhh-----hhhH--HHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC-------CCCCCC
Q psy2637 299 SKYV-----GQGE--KLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL-------HSNSEH 364 (502)
Q Consensus 299 ~~~~-----g~~~--~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~-------~~~~~~ 364 (502)
.... |... .-..++|+.|.+ |++|||||..| +.+++.++++.+... ......
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm-----------Sp~lQaKLLRFL~DGtFRRVGee~Ev~v 333 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM-----------SPRLQAKLLRFLNDGTFRRVGEDHEVHV 333 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc-----------CHHHHHHHHHHhcCCceeecCCcceEEE
Confidence 6432 2221 223678998887 99999999766 455777888877532 222236
Q ss_pred cEEEEEEcCCC--C-----CCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHH
Q psy2637 365 RLLVMGATNRP--Q-----ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTN 437 (502)
Q Consensus 365 ~v~vIaaTN~~--~-----~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~ 437 (502)
+|+||+||..+ + .+.+.++-|++ +..+..|+++||.+.+.-+++.+- +..-+++.-....+++.-+..
T Consensus 334 dVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~PpLRer~~di~pL~e~Fv----~q~s~elg~p~pkl~~~~~~~ 408 (511)
T COG3283 334 DVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPPLRERPQDIMPLAELFV----QQFSDELGVPRPKLAADLLTV 408 (511)
T ss_pred EEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCccccCcccchHHHHHHH----HHHHHHhCCCCCccCHHHHHH
Confidence 79999999765 2 34455556996 999999999999998876665431 112234444445789999999
Q ss_pred HHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHH
Q psy2637 438 LAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLES 474 (502)
Q Consensus 438 L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~a 474 (502)
|.+|.|++|+|++.|.+.++....++..++.+|+.-+
T Consensus 409 L~~y~WpGNVRqL~N~iyRA~s~~Eg~~l~i~~i~Lp 445 (511)
T COG3283 409 LTRYAWPGNVRQLKNAIYRALTLLEGYELRIEDILLP 445 (511)
T ss_pred HHHcCCCccHHHHHHHHHHHHHHhccCccchhhcccC
Confidence 9999999999999999999999999999999888644
No 60
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.81 E-value=1.5e-19 Score=196.33 Aligned_cols=218 Identities=19% Similarity=0.269 Sum_probs=162.9
Q ss_pred CCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhh
Q psy2637 223 SPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTS 299 (502)
Q Consensus 223 ~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~ 299 (502)
+...+++++|.+..++.+.+.+ ..++....+|||+||+||||+++|++||..+ +.||+.+||+.+..
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~----------~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQA----------RVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred ccCccCceEECCHHHHHHHHHH----------HHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 3457889999999999999887 5555667899999999999999999999987 57999999988754
Q ss_pred hhhh-----hhH-------HHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC-------CC
Q psy2637 300 KYVG-----QGE-------KLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL-------HS 360 (502)
Q Consensus 300 ~~~g-----~~~-------~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~-------~~ 360 (502)
.... ... ....+.++.+. .++||||||+.|.. ..+..|+..++.. ..
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~GtL~ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~~~~~ 326 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELAD---GGTLFLDEIGEISP-----------AFQAKLLRVLQEGEFERVGGNR 326 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCcccccC---CCeEEEechhhCCH-----------HHHHHHHHHHhcCcEEECCCCc
Confidence 3221 110 00112344443 48999999998843 2445556555421 11
Q ss_pred CCCCcEEEEEEcCCC-------CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhc---CCC
Q psy2637 361 NSEHRLLVMGATNRP-------QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLT---EGY 430 (502)
Q Consensus 361 ~~~~~v~vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t---~g~ 430 (502)
....++++|++|+.. ..+.+.++.|++ .+.+.+|++++|.+++..++..+ +..++... .++
T Consensus 327 ~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~--------l~~~~~~~~~~~~~ 397 (534)
T TIGR01817 327 TLKVDVRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAF--------LEKFNRENGRPLTI 397 (534)
T ss_pred eEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHH--------HHHHHHHcCCCCCC
Confidence 222468999999864 245667777886 88999999999999887776543 23333221 479
Q ss_pred CHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHH
Q psy2637 431 SGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLE 473 (502)
Q Consensus 431 s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~ 473 (502)
+++.+..|.++.|++|+||+++..++++..+.+..|+.+|++.
T Consensus 398 s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~~~~~I~~~~l~~ 440 (534)
T TIGR01817 398 TPSAIRVLMSCKWPGNVRELENCLERTATLSRSGTITRSDFSC 440 (534)
T ss_pred CHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCcccHHHCch
Confidence 9999999999999999999999999999888888999999874
No 61
>KOG0744|consensus
Probab=99.81 E-value=2.1e-19 Score=174.90 Aligned_cols=236 Identities=28% Similarity=0.390 Sum_probs=171.2
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhh--hcCCCCCcceEEecCCCCcHHHHHHHHHHHc---------cCceEEeec
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELF--TGLRTPSRGLLLFGPPGNGKTMLARAVATAC---------NATFFSISA 294 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~--~~~~~~~~~vLL~GppGtGKT~lAraia~~~---------~~~fv~i~~ 294 (502)
-|+.++--...|+.+..++.......+.- ..+-.-.+-+|++||||||||+|++++|+.+ ...++++|+
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 36777777788898888775443322200 1111234668999999999999999999988 246789999
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHhc---CC--eEEEEcCCcchhccccc----ChhHHHHHHHHHHHHHhccCCCCCCCc
Q psy2637 295 ASLTSKYVGQGEKLVRALFAMAREL---QP--SIIFIDEVDSVLSERKE----GEHEASRRLKTEFLLEFDGLHSNSEHR 365 (502)
Q Consensus 295 s~l~~~~~g~~~~~~~~lf~~a~~~---~p--~iLfLDEId~L~~~~~~----~~~~~~~~~~~~ll~~l~g~~~~~~~~ 365 (502)
..+.++|.++..+.+..+|...... .. ..++|||+++|...|.. +.....-|+.+.++.+++.+... ++
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~--~N 297 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY--PN 297 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC--CC
Confidence 9999999999999999999876543 11 35679999999877632 33344568899999999988655 46
Q ss_pred EEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhc---CCCC--------------CHHHHHHHHHh-c
Q psy2637 366 LLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKH---GNPL--------------SQLELDAVAKL-T 427 (502)
Q Consensus 366 v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~---~~~l--------------~~~~l~~la~~-t 427 (502)
|++++|+|..+.+|.++.+|-+.+.++.+|+...+.+|++..+.+. |.-+ .+.....+... +
T Consensus 298 vliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 298 VLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999888762 1110 11112223332 3
Q ss_pred CCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHh
Q psy2637 428 EGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKR 477 (502)
Q Consensus 428 ~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~ 477 (502)
.|+||+.|+.|=--|...-.+ ..+++.++|..|+..
T Consensus 378 ~gLSGRtlrkLP~Laha~y~~--------------~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 378 VGLSGRTLRKLPLLAHAEYFR--------------TFTVDLSNFLLALLE 413 (423)
T ss_pred cCCccchHhhhhHHHHHhccC--------------CCccChHHHHHHHHH
Confidence 688888888764433322222 247888888877643
No 62
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.81 E-value=4.1e-20 Score=199.47 Aligned_cols=217 Identities=18% Similarity=0.242 Sum_probs=163.2
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLT 298 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~ 298 (502)
.....|++++|.+..++.+.+.+ ..++....+|||+|++||||+++|+++|..+ +.||+.+||+.+.
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~----------~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQA----------RKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccccceeECCHHHHHHHHHH----------HHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 34568999999999999888877 4445567889999999999999999999877 4799999999886
Q ss_pred hhhh-----hhhH-------HHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC-------C
Q psy2637 299 SKYV-----GQGE-------KLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL-------H 359 (502)
Q Consensus 299 ~~~~-----g~~~-------~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~-------~ 359 (502)
.... |... ....++|+.+.+ ++||||||+.|.+. ++..++..++.. .
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEMSPR-----------MQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhCCHH-----------HHHHHHHHHhcCCcccCCCC
Confidence 5322 2110 111345666554 89999999988432 344555555321 1
Q ss_pred CCCCCcEEEEEEcCCC-------CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh----cC
Q psy2637 360 SNSEHRLLVMGATNRP-------QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKL----TE 428 (502)
Q Consensus 360 ~~~~~~v~vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~----t~ 428 (502)
.....+++||+||+.+ ..+.+.++.|++ ++.+..|++++|.+.+..++..+ +..++.. ..
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~f--------l~~~~~~~g~~~~ 404 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELF--------VARFADEQGVPRP 404 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHH--------HHHHHHHcCCCCC
Confidence 1223578999999764 235567788986 79999999999998887766433 3334333 34
Q ss_pred CCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHH
Q psy2637 429 GYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDF 471 (502)
Q Consensus 429 g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~ 471 (502)
+++++.+..|.++.|++|++++++..++++...++..|+.+|+
T Consensus 405 ~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~~~~~~i~~~~~ 447 (520)
T PRK10820 405 KLAADLNTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDI 447 (520)
T ss_pred CcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCcccHHHc
Confidence 7999999999999999999999999999999888889999995
No 63
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.80 E-value=9.4e-18 Score=171.51 Aligned_cols=227 Identities=18% Similarity=0.188 Sum_probs=155.8
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~ 300 (502)
...|.+|++++|++..++.+..++... .....++.++||+||||||||++|+++|++++..+..+++..+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~-------~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~- 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAA-------KKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK- 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHH-------HhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC-
Confidence 356779999999999999998877322 111345678999999999999999999999998877665543321
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHH--HhccCCCC-----CCCcEEEEEEcC
Q psy2637 301 YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLL--EFDGLHSN-----SEHRLLVMGATN 373 (502)
Q Consensus 301 ~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~--~l~g~~~~-----~~~~v~vIaaTN 373 (502)
...+..++... ..+++|||||||.+... ..+........... .++..... ...++.+|++||
T Consensus 90 -----~~~l~~~l~~l--~~~~vl~IDEi~~l~~~----~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~ 158 (328)
T PRK00080 90 -----PGDLAAILTNL--EEGDVLFIDEIHRLSPV----VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATT 158 (328)
T ss_pred -----hHHHHHHHHhc--ccCCEEEEecHhhcchH----HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecC
Confidence 11123333322 24579999999988432 11111111111100 00100000 113478899999
Q ss_pred CCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 374 RPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 374 ~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
.+..+++++++||...+.++.|+.+++.++++..+...+..++++.+..++..+.|.. +.+..++..++..+..+
T Consensus 159 ~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a~~~---- 233 (328)
T PRK00080 159 RAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDFAQVK---- 233 (328)
T ss_pred CcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHc----
Confidence 9999999999999878999999999999999999999999999999999999999866 55666666655444332
Q ss_pred hhhhhcccCCCcccHHHHHHHHHhhc
Q psy2637 454 QVIKVDLKSVRNISYRDFLESLKRIR 479 (502)
Q Consensus 454 ~~~~v~~~~~~~It~~d~~~al~~~~ 479 (502)
....|+.+++..++....
T Consensus 234 --------~~~~I~~~~v~~~l~~~~ 251 (328)
T PRK00080 234 --------GDGVITKEIADKALDMLG 251 (328)
T ss_pred --------CCCCCCHHHHHHHHHHhC
Confidence 123566677766666543
No 64
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.80 E-value=2.4e-19 Score=198.84 Aligned_cols=220 Identities=17% Similarity=0.213 Sum_probs=163.6
Q ss_pred CCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhh
Q psy2637 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSK 300 (502)
Q Consensus 224 ~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~ 300 (502)
...|++++|.+..++.+.+.+ ..++....+|||+|++||||+++|++||+.+ +.||+.+||+.+...
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~----------~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFG----------RQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHH----------HHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 446899999999999988887 4455567889999999999999999999987 479999999987642
Q ss_pred -----hhhhh----HHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCC-------CCCCC
Q psy2637 301 -----YVGQG----EKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLH-------SNSEH 364 (502)
Q Consensus 301 -----~~g~~----~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~-------~~~~~ 364 (502)
++|.. .....+.|+.+. .++||||||+.|.. .++..|+..++... ...+.
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~---~GtL~ldei~~l~~-----------~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAH---GGTLFLEKVEYLSP-----------ELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECC---CCEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 22211 000112344443 48999999998843 34455555554211 11224
Q ss_pred cEEEEEEcCCC-------CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh---cCCCCHHH
Q psy2637 365 RLLVMGATNRP-------QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKL---TEGYSGSD 434 (502)
Q Consensus 365 ~v~vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~---t~g~s~~d 434 (502)
+++||+||+.. ..+.+.++-|++ .+.+.+|++++|.+++..++..+ +..++.. ..+++++.
T Consensus 457 ~~riI~~t~~~l~~~~~~~~f~~dL~~~l~-~~~i~lPpLreR~~Di~~L~~~~--------l~~~~~~~~~~~~~s~~a 527 (638)
T PRK11388 457 DVRVIATTTADLAMLVEQNRFSRQLYYALH-AFEITIPPLRMRREDIPALVNNK--------LRSLEKRFSTRLKIDDDA 527 (638)
T ss_pred eEEEEEeccCCHHHHHhcCCChHHHhhhhc-eeEEeCCChhhhhhHHHHHHHHH--------HHHHHHHhCCCCCcCHHH
Confidence 68999999864 245566666886 89999999999999888777644 2333322 23689999
Q ss_pred HHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHH
Q psy2637 435 LTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLK 476 (502)
Q Consensus 435 L~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~ 476 (502)
+..|.++.|++|+||+.+..++++..+....|+.+|++..+.
T Consensus 528 ~~~L~~y~WPGNvreL~~~l~~~~~~~~~~~i~~~~lp~~~~ 569 (638)
T PRK11388 528 LARLVSYRWPGNDFELRSVIENLALSSDNGRIRLSDLPEHLF 569 (638)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHHHhCCCCeecHHHCchhhh
Confidence 999999999999999999999998888888999999987764
No 65
>KOG0735|consensus
Probab=99.80 E-value=1.5e-18 Score=183.09 Aligned_cols=214 Identities=23% Similarity=0.318 Sum_probs=171.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc----CceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN----ATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSE 335 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~----~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~ 335 (502)
...++||+||+|+|||.|+++++++.. ..+..++|+.+.+.......+.+..+|..+.++.|+||+||++|.+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~ 509 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA 509 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc
Confidence 357899999999999999999999883 5667899999998888888999999999999999999999999999873
Q ss_pred cc--cChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhc
Q psy2637 336 RK--EGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKH 411 (502)
Q Consensus 336 ~~--~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~ 411 (502)
.. .++.......+..++..+.......+..+.+||+.+..+.+++.+.+ +|+.++.++.|+..+|.+|++..+.+.
T Consensus 510 s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~ 589 (952)
T KOG0735|consen 510 SSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKN 589 (952)
T ss_pred CcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhh
Confidence 22 12222333334445544332333344568999999999999998887 899899999999999999999999887
Q ss_pred CCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhcCC
Q psy2637 412 GNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIRRS 481 (502)
Q Consensus 412 ~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~~s 481 (502)
.......+++.++..|+||.+.|+..++.+|...++.+.-.. ....+|-++|.++++.+.|.
T Consensus 590 ~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~--------~~klltke~f~ksL~~F~P~ 651 (952)
T KOG0735|consen 590 LSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN--------GPKLLTKELFEKSLKDFVPL 651 (952)
T ss_pred hhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc--------CcccchHHHHHHHHHhcChH
Confidence 655566777889999999999999999999999998543111 12378999999999877663
No 66
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.80 E-value=1.5e-18 Score=187.52 Aligned_cols=218 Identities=23% Similarity=0.323 Sum_probs=155.4
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc----------cCce
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC----------NATF 289 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~f 289 (502)
+..+|.+|++++|++..++.+...+. +..+.++||+||||||||++|+++++.+ +.+|
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 44678899999999999999987652 2235789999999999999999999753 3689
Q ss_pred EEeeccch-------hhhhhhhhH----------------HHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHH
Q psy2637 290 FSISAASL-------TSKYVGQGE----------------KLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRR 346 (502)
Q Consensus 290 v~i~~s~l-------~~~~~g~~~----------------~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~ 346 (502)
+.++|+.. .....+... ....+.+..+ ..++||||||+.|.+.
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~~----------- 190 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHPV----------- 190 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCHH-----------
Confidence 99998642 111111100 0011223333 3489999999988433
Q ss_pred HHHHHHHHhccC------------------------CCCCCCcEEEEEEc-CCCCCCcHHHHccccceeeecCCCHHHHH
Q psy2637 347 LKTEFLLEFDGL------------------------HSNSEHRLLVMGAT-NRPQELDEAVLRRFSKRIYVTLPDSKTRK 401 (502)
Q Consensus 347 ~~~~ll~~l~g~------------------------~~~~~~~v~vIaaT-N~~~~l~~~l~rRf~~~I~i~~P~~~er~ 401 (502)
.++.|+..++.. ....+.++++|++| +.++.+++++++|+. .+.|++++.+++.
T Consensus 191 ~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~-~I~f~pL~~eei~ 269 (531)
T TIGR02902 191 QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCV-EIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhh-eeeCCCCCHHHHH
Confidence 333444433210 01123456666555 678999999999995 8899999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhh
Q psy2637 402 SLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRI 478 (502)
Q Consensus 402 ~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~ 478 (502)
++++..+++.+..+++..++.++..+. +++++.++++.|...+..+. ...|+.+|+.+++...
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~------------~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEG------------RKRILAEDIEWVAENG 332 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCC------------CcEEcHHHHHHHhCCc
Confidence 999999999888889988888877653 78899999988876554332 2479999999998743
No 67
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.80 E-value=7.7e-19 Score=196.08 Aligned_cols=212 Identities=20% Similarity=0.298 Sum_probs=157.4
Q ss_pred CCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh
Q psy2637 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY 301 (502)
Q Consensus 225 ~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~ 301 (502)
..|++++|.+..++.+.+.+ ..++....+|||+||+|||||++|++||..+ +.||+.++|..+....
T Consensus 373 ~~~~~liG~S~~~~~~~~~~----------~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQV----------EMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHH----------HHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 36789999999999998887 4455567899999999999999999999976 5799999999875421
Q ss_pred -----hhhh-------HHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc-------CCCCC
Q psy2637 302 -----VGQG-------EKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG-------LHSNS 362 (502)
Q Consensus 302 -----~g~~-------~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g-------~~~~~ 362 (502)
.|.. .....+.++.+.+ |+||||||+.|.. .++..++..++. .....
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le~a~~---GtL~Ldei~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~~~ 508 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFELADK---SSLFLDEVGDMPL-----------ELQPKLLRVLQEQEFERLGSNKII 508 (686)
T ss_pred hhhhhcCcccccccccccchhhHHHhcCC---CeEEEechhhCCH-----------HHHHHHHHHHHhCCEEeCCCCCcc
Confidence 1210 0112344555544 8999999998833 344455555532 12222
Q ss_pred CCcEEEEEEcCCC-------CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHH----hcCCCC
Q psy2637 363 EHRLLVMGATNRP-------QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAK----LTEGYS 431 (502)
Q Consensus 363 ~~~v~vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~----~t~g~s 431 (502)
..++++|++|+.+ ..+...++.|++ .+.+..|++++|.+++..++..+ +..++. ...+++
T Consensus 509 ~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~--------l~~~~~~~~~~~~~~s 579 (686)
T PRK15429 509 QTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAF--------TFKIARRMGRNIDSIP 579 (686)
T ss_pred cceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHH--------HHHHHHHcCCCCCCcC
Confidence 3578999999874 244556677886 88999999999999988777543 233333 334799
Q ss_pred HHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHH
Q psy2637 432 GSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYR 469 (502)
Q Consensus 432 ~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~ 469 (502)
++.++.|.++.|++|++|+++.+++++..+.+..|+.+
T Consensus 580 ~~al~~L~~y~WPGNvrEL~~~i~~a~~~~~~~~i~~~ 617 (686)
T PRK15429 580 AETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLS 617 (686)
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCCCccccc
Confidence 99999999999999999999999999988777777764
No 68
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.5e-18 Score=179.73 Aligned_cols=172 Identities=21% Similarity=0.267 Sum_probs=132.8
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh---------
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS--------- 299 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~--------- 299 (502)
|-.|++++++++.+++......++ ..++-++|+||||+|||+|++.||+.++..|++++.+.+.+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKK------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhcc------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 578999999999998855433222 23466889999999999999999999999999999877653
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHH--HhccCCC--CCCCcEEEEEEcCCC
Q psy2637 300 KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLL--EFDGLHS--NSEHRLLVMGATNRP 375 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~--~l~g~~~--~~~~~v~vIaaTN~~ 375 (502)
.|+|+....+-+-+..+...+| +++|||||.|..+-.++...++..++.--.+ ..+.... -.-++|++|+|+|..
T Consensus 398 TYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl 476 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSL 476 (782)
T ss_pred cccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcc
Confidence 5889988887777888888888 9999999999877665555554433321110 0111100 011579999999999
Q ss_pred CCCcHHHHccccceeeecCCCHHHHHHHHHHHH
Q psy2637 376 QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLL 408 (502)
Q Consensus 376 ~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l 408 (502)
+.++.++++|+. +|.+.-++..|..+|.+.++
T Consensus 477 ~tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 477 DTIPAPLLDRME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ccCChHHhccee-eeeecCCChHHHHHHHHHhc
Confidence 999999999995 99999999999999988775
No 69
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.79 E-value=2.4e-18 Score=165.40 Aligned_cols=200 Identities=22% Similarity=0.298 Sum_probs=144.6
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~ 300 (502)
.-.|..|++++||+++++++.-++.....+ .....|+||+||||.||||||..+|++++..+...++..+...
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~ 91 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP 91 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh
Confidence 346789999999999999999887544322 2345799999999999999999999999988776665544321
Q ss_pred hhhhhHHHHHHHHHHHHhc-CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHH-hccCCCC------CCCcEEEEEEc
Q psy2637 301 YVGQGEKLVRALFAMAREL-QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLE-FDGLHSN------SEHRLLVMGAT 372 (502)
Q Consensus 301 ~~g~~~~~~~~lf~~a~~~-~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~-l~g~~~~------~~~~v~vIaaT 372 (502)
.++....... ..+|+|||||+.+.+.. .+.+...+..+... +-|.... .-.++-+|+||
T Consensus 92 ---------gDlaaiLt~Le~~DVLFIDEIHrl~~~v----EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 92 ---------GDLAAILTNLEEGDVLFIDEIHRLSPAV----EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred ---------hhHHHHHhcCCcCCeEEEehhhhcChhH----HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 2222222222 33799999999995432 12222222222111 1111110 11467899999
Q ss_pred CCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2637 373 NRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKD 441 (502)
Q Consensus 373 N~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~ 441 (502)
.+...+..+++.||..+..+..++.++..+|+......++..++++...++|+++.|-+. --..|+++
T Consensus 159 Tr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR-IAnRLLrR 226 (332)
T COG2255 159 TRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR-IANRLLRR 226 (332)
T ss_pred cccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH-HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998554 33344443
No 70
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.79 E-value=1.3e-17 Score=168.52 Aligned_cols=201 Identities=19% Similarity=0.237 Sum_probs=139.4
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhh
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQG 305 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~ 305 (502)
+|++++|++..++.+..++.... .....+.+++|+||||||||++|+++|++++.++..+++..... .+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~-------~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~~- 71 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAK-------MRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PGD- 71 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHH-------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--chh-
Confidence 68999999999999998874321 11233567999999999999999999999988776665433221 111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHH--hccC-C----CCCCCcEEEEEEcCCCCCC
Q psy2637 306 EKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLE--FDGL-H----SNSEHRLLVMGATNRPQEL 378 (502)
Q Consensus 306 ~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~--l~g~-~----~~~~~~v~vIaaTN~~~~l 378 (502)
+...+... ..+.+|||||++.+.+.. .+....+.+..... +... . .....++.+|++||.+..+
T Consensus 72 ---l~~~l~~~--~~~~vl~iDEi~~l~~~~----~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l 142 (305)
T TIGR00635 72 ---LAAILTNL--EEGDVLFIDEIHRLSPAV----EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGML 142 (305)
T ss_pred ---HHHHHHhc--ccCCEEEEehHhhhCHHH----HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCcccc
Confidence 11222221 245799999999885331 11111111111000 0000 0 0112347899999999999
Q ss_pred cHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhh
Q psy2637 379 DEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGP 446 (502)
Q Consensus 379 ~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~a 446 (502)
++++++||...+.+++|+.+++.++++..+...+..++++.++.+++.+.|+.. .+..++..+|..+
T Consensus 143 ~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR-~~~~ll~~~~~~a 209 (305)
T TIGR00635 143 TSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPR-IANRLLRRVRDFA 209 (305)
T ss_pred CHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHH
Confidence 999999998788999999999999999999988888999999999999998764 5567777666443
No 71
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.78 E-value=2.8e-17 Score=185.33 Aligned_cols=233 Identities=20% Similarity=0.253 Sum_probs=153.5
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh---------h
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT---------S 299 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~---------~ 299 (502)
+++|++.+++.+.+++....... ...+.+++|+||||||||++|+++|+.++.+|+.++++... .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 58899999999998775432111 12335799999999999999999999999999999876543 2
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc-----CC------CCCCCcEEE
Q psy2637 300 KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG-----LH------SNSEHRLLV 368 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g-----~~------~~~~~~v~v 368 (502)
.|.|.....+...+..+....| ||||||||.+.+....+... .|+..++. +. .....++++
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~~~~-------aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGDPAS-------ALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCCHHH-------HHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 3556655556666777666565 89999999997643322222 23333321 00 001146899
Q ss_pred EEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHh-----hcC-----CCCCHHHHHHHHHhcC-CCCHHHHHH
Q psy2637 369 MGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLN-----KHG-----NPLSQLELDAVAKLTE-GYSGSDLTN 437 (502)
Q Consensus 369 IaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~-----~~~-----~~l~~~~l~~la~~t~-g~s~~dL~~ 437 (502)
|+|||..+.+++++++||. +|.|+.|+.+++.+|++.++. ..+ ..+++..+..+++... ....+.|+.
T Consensus 467 I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r 545 (775)
T TIGR00763 467 IATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLER 545 (775)
T ss_pred EEecCCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHH
Confidence 9999999999999999995 899999999999999987762 222 3467788888876332 344466666
Q ss_pred HHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHH
Q psy2637 438 LAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLK 476 (502)
Q Consensus 438 L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~ 476 (502)
.+...+....+++...............|+.+++...+.
T Consensus 546 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 546 QIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred HHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 665555444443311000000000013677777766554
No 72
>KOG0736|consensus
Probab=99.77 E-value=5e-18 Score=180.78 Aligned_cols=235 Identities=23% Similarity=0.320 Sum_probs=179.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG 339 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~ 339 (502)
....+||+|+||||||++++++|++++.+++.++|.++.....+..+..+..+|..|+...|+||||-++|.+.-+..++
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgg 509 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGG 509 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCc
Confidence 34679999999999999999999999999999999999998888888899999999999999999999999997554443
Q ss_pred hhHHHHHHHHHHHHHhc-cCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHH
Q psy2637 340 EHEASRRLKTEFLLEFD-GLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQL 418 (502)
Q Consensus 340 ~~~~~~~~~~~ll~~l~-g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~ 418 (502)
.. .+++..+-..+. .........++||++|+..+.+++.+.+-|...|.++.|+.++|.++++.++...... .+.
T Consensus 510 ed---~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v 585 (953)
T KOG0736|consen 510 ED---ARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN-QDV 585 (953)
T ss_pred hh---HHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc-hHH
Confidence 32 233332222222 1222234579999999999999999999887899999999999999999999876432 467
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhh--------hhhhcccCCCcccHHHHHHHHHhhcCCCCHHHHHH-
Q psy2637 419 ELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQ--------VIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQ- 489 (502)
Q Consensus 419 ~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~--------~~~v~~~~~~~It~~d~~~al~~~~~s~~~~~l~~- 489 (502)
....++.++.||+.+++..++...-..+..+..+.. ........+..|+.+||..++.+++..-+ +.+-+
T Consensus 586 ~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs-~aiGAP 664 (953)
T KOG0736|consen 586 NLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFS-DAIGAP 664 (953)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhh-hhcCCC
Confidence 889999999999999999999888555544443332 11122334578999999999987654321 11211
Q ss_pred ---HHHHHHHhCC
Q psy2637 490 ---YEAWNRDYGD 499 (502)
Q Consensus 490 ---~~~w~~~~g~ 499 (502)
...|.+.+|-
T Consensus 665 KIPnV~WdDVGGL 677 (953)
T KOG0736|consen 665 KIPNVSWDDVGGL 677 (953)
T ss_pred CCCccchhcccCH
Confidence 1257777764
No 73
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=2.7e-17 Score=176.34 Aligned_cols=190 Identities=23% Similarity=0.278 Sum_probs=140.8
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC------------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA------------ 287 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~------------ 287 (502)
.++.|.+|++++|++.+++.|..++... ..+..+||+||+|||||++|+.+++.+++
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 3578889999999999999999998433 12456799999999999999999998864
Q ss_pred -----------------ceEEeeccchhhhhhhhhHHHHHHHHHHHH----hcCCeEEEEcCCcchhcccccChhHHHHH
Q psy2637 288 -----------------TFFSISAASLTSKYVGQGEKLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEGEHEASRR 346 (502)
Q Consensus 288 -----------------~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~~~~~~ 346 (502)
.++.++.+. ....+.++.+.+.+. ..+..|+||||+|.|.. .
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~ 139 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------H 139 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------H
Confidence 122222211 011222344444432 22347999999998832 2
Q ss_pred HHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Q psy2637 347 LKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKL 426 (502)
Q Consensus 347 ~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~ 426 (502)
..+.||..|+. ++.++++|.+||.++.|.+.+++||. .+.|..++.++..+.+...+...+..+++..+..|++.
T Consensus 140 AaNALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRCq-~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHHH-hcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 35567776653 44568899999999999999999995 89999999999999999999888888888889999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy2637 427 TEGYSGSDLTNLAKDAA 443 (502)
Q Consensus 427 t~g~s~~dL~~L~~~a~ 443 (502)
++|..+.. .+++..++
T Consensus 215 A~Gs~RdA-LsLLdQai 230 (700)
T PRK12323 215 AQGSMRDA-LSLTDQAI 230 (700)
T ss_pred cCCCHHHH-HHHHHHHH
Confidence 98855544 44544443
No 74
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.77 E-value=2.4e-17 Score=165.55 Aligned_cols=180 Identities=31% Similarity=0.447 Sum_probs=135.0
Q ss_pred CCCCCcccccChHHHH---HHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 222 GSPVQWQDIAGQEVAK---QALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~---~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
-.|.++++++||+... .-|.+++.. ..-.+++||||||||||++|+.||...+.+|..+|...
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 4577899999998765 345555522 23478999999999999999999999999999998743
Q ss_pred hhhhhhhHHHHHHHHHHHHhcC----CeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEc--
Q psy2637 299 SKYVGQGEKLVRALFAMARELQ----PSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGAT-- 372 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~~----p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaT-- 372 (502)
...+.++.+++.++... ..|||||||+.+-. ..|..||..++ ...+++|+||
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK-----------~QQD~lLp~vE------~G~iilIGATTE 141 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK-----------AQQDALLPHVE------NGTIILIGATTE 141 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh-----------hhhhhhhhhhc------CCeEEEEeccCC
Confidence 23345678888885432 36999999998822 22334555554 2458888877
Q ss_pred CCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhh--cCCC-----CCHHHHHHHHHhcCCCCHHHHHHH
Q psy2637 373 NRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK--HGNP-----LSQLELDAVAKLTEGYSGSDLTNL 438 (502)
Q Consensus 373 N~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~--~~~~-----l~~~~l~~la~~t~g~s~~dL~~L 438 (502)
|+.-.+++++++|+. ++.+.+.+.++...++...+.. .+.. ++++.++.++..+.|...+.|+.|
T Consensus 142 NPsF~ln~ALlSR~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~L 213 (436)
T COG2256 142 NPSFELNPALLSRAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLL 213 (436)
T ss_pred CCCeeecHHHhhhhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHH
Confidence 445699999999995 9999999999999999984432 3333 678889999999999877777655
No 75
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=5.8e-17 Score=169.88 Aligned_cols=186 Identities=23% Similarity=0.267 Sum_probs=140.0
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc-----------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT----------- 288 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~----------- 288 (502)
..+.|.+|++++|++.+.+.|..++... ..+..+||+||+|||||++|+.+|+.++..
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 3478889999999999999999888432 123568999999999999999999988642
Q ss_pred -------------eEEeeccchhhhhhhhhHHHHHHHHHHHH----hcCCeEEEEcCCcchhcccccChhHHHHHHHHHH
Q psy2637 289 -------------FFSISAASLTSKYVGQGEKLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEF 351 (502)
Q Consensus 289 -------------fv~i~~s~l~~~~~g~~~~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~l 351 (502)
++.++++.- .....++.+.+.+. .....|+||||+|.|.. ..++.|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NAL 141 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNAL 141 (484)
T ss_pred cHHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHHH
Confidence 222222110 11122333333332 22446999999998832 245566
Q ss_pred HHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCC
Q psy2637 352 LLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYS 431 (502)
Q Consensus 352 l~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s 431 (502)
+..++ .++..+++|.+|+.++.+.+++++|+. .+.|..++.++..+.++..+...+..++++.+..+++.++|..
T Consensus 142 LKtLE----EPp~~viFILaTte~~kI~~TI~SRCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 142 LKTLE----EPPAHIVFILATTEFHKIPETILSRCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSV 216 (484)
T ss_pred HHHhh----cCCCceEEEeecCChhhccHHHHhhhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChH
Confidence 66664 344678999999999999999999995 8999999999999999999999999999999999999999876
Q ss_pred HHHHHHH
Q psy2637 432 GSDLTNL 438 (502)
Q Consensus 432 ~~dL~~L 438 (502)
+..+..|
T Consensus 217 RdAL~lL 223 (484)
T PRK14956 217 RDMLSFM 223 (484)
T ss_pred HHHHHHH
Confidence 6555544
No 76
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.77 E-value=4.4e-17 Score=182.77 Aligned_cols=237 Identities=23% Similarity=0.325 Sum_probs=170.7
Q ss_pred HHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-------
Q psy2637 213 VVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC------- 285 (502)
Q Consensus 213 ~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~------- 285 (502)
.+...+.....+..+++++|++.....+.+.+... ...+++|+||||||||++|+.+|+.+
T Consensus 167 ~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~ 234 (731)
T TIGR02639 167 KYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRR------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPE 234 (731)
T ss_pred HHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCch
Confidence 34444444456668899999999999888776322 24689999999999999999999987
Q ss_pred ---cCceEEeeccchh--hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCC
Q psy2637 286 ---NATFFSISAASLT--SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHS 360 (502)
Q Consensus 286 ---~~~fv~i~~s~l~--~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 360 (502)
+..++.++++.+. ..|.|+.+..++.+++.+....++||||||+|.+.+........ ....+.|...+.
T Consensus 235 ~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~---- 308 (731)
T TIGR02639 235 NLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPALS---- 308 (731)
T ss_pred hhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHh----
Confidence 6778899988887 46889999999999999987788999999999998654322111 112223333332
Q ss_pred CCCCcEEEEEEcCCC-----CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHhcCCCC
Q psy2637 361 NSEHRLLVMGATNRP-----QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK----HGNPLSQLELDAVAKLTEGYS 431 (502)
Q Consensus 361 ~~~~~v~vIaaTN~~-----~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~----~~~~l~~~~l~~la~~t~g~s 431 (502)
...+.+|++||.. ...++++.|||+ .|.++.|+.+++.+|++..... ++..++++.+..++..+..|-
T Consensus 309 --~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 309 --SGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred --CCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 2458999999963 367999999997 8999999999999999977654 456688999999988887653
Q ss_pred ------HHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhc
Q psy2637 432 ------GSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIR 479 (502)
Q Consensus 432 ------~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~ 479 (502)
...|. |+.+|+... ++... ......|+.+|+..++....
T Consensus 386 ~~r~~P~kai~-lld~a~a~~--~~~~~------~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 386 NDRFLPDKAID-VIDEAGASF--RLRPK------AKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred ccccCCHHHHH-HHHHhhhhh--hcCcc------cccccccCHHHHHHHHHHHh
Confidence 33343 344443211 11000 01134688999998887653
No 77
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=6.9e-17 Score=175.20 Aligned_cols=186 Identities=24% Similarity=0.274 Sum_probs=140.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc-----------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT----------- 288 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~----------- 288 (502)
+++.|.+|++++|++.+++.|..++... ..+..+||+||+|||||++|+.+++.+++.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~g-----------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDGG-----------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 4578899999999999999999987432 224567999999999999999999988542
Q ss_pred -------------eEEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHH
Q psy2637 289 -------------FFSISAASLTSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEF 351 (502)
Q Consensus 289 -------------fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~l 351 (502)
+++++.+. ......++.+++.+.. ....|+||||+|.|.. ..++.|
T Consensus 77 ~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NAL 139 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAM 139 (830)
T ss_pred HHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHH
Confidence 22222211 0112234455554432 2347999999998832 234556
Q ss_pred HHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCC
Q psy2637 352 LLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYS 431 (502)
Q Consensus 352 l~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s 431 (502)
+..|+. +..+++||.+||.++.|.+.+++||. .+.|..++.++..+.++..+...+..++++.+..|++.++|..
T Consensus 140 LKtLEE----PP~~v~FILaTtd~~KIp~TIrSRCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 140 LKTLEE----PPPHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSM 214 (830)
T ss_pred HHHHHh----cCCCeEEEEEECChhhccchhhhheE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 666653 34468999999999999999999995 8999999999999999999999888999999999999999876
Q ss_pred HHHHHHH
Q psy2637 432 GSDLTNL 438 (502)
Q Consensus 432 ~~dL~~L 438 (502)
+..|..+
T Consensus 215 RdALsLL 221 (830)
T PRK07003 215 RDALSLT 221 (830)
T ss_pred HHHHHHH
Confidence 6555543
No 78
>KOG2004|consensus
Probab=99.74 E-value=3.3e-16 Score=165.91 Aligned_cols=215 Identities=24% Similarity=0.297 Sum_probs=151.6
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh--------
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS-------- 299 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~-------- 299 (502)
+|-.|++++|+++.+++.....+. ...+.-++|+||||+|||+++++||+.++..|++++.+.+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrg------s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRG------SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcc------cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 357899999999999885432211 134567889999999999999999999999999998876653
Q ss_pred -hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHH--HHhccCCCCC--CCcEEEEEEcCC
Q psy2637 300 -KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFL--LEFDGLHSNS--EHRLLVMGATNR 374 (502)
Q Consensus 300 -~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll--~~l~g~~~~~--~~~v~vIaaTN~ 374 (502)
.|+|+....+-+.+......+| +++|||||.+...-+++...++..++.--. ..++.....+ -+.|++|||+|.
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~ 563 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANV 563 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccc
Confidence 5889988888888888888888 999999999985444444444332221100 0111111111 156899999999
Q ss_pred CCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhh-----cC-----CCCCHHHHHHHHHhcC---C--CCHHHHHHHH
Q psy2637 375 PQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK-----HG-----NPLSQLELDAVAKLTE---G--YSGSDLTNLA 439 (502)
Q Consensus 375 ~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~-----~~-----~~l~~~~l~~la~~t~---g--~s~~dL~~L~ 439 (502)
.+.+++++++|+. +|.++-+..+|..+|.+.++-. .+ ..+++..+..+.+..- | --...|..+|
T Consensus 564 idtIP~pLlDRME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~ 642 (906)
T KOG2004|consen 564 IDTIPPPLLDRME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKIC 642 (906)
T ss_pred cccCChhhhhhhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999995 9999999999999999888632 22 3345555444433221 1 1114566777
Q ss_pred HHHHhhhHHhh
Q psy2637 440 KDAALGPIREL 450 (502)
Q Consensus 440 ~~a~~~airel 450 (502)
+.++..-++..
T Consensus 643 Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 643 RKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHhh
Confidence 77777666655
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=1.1e-16 Score=170.00 Aligned_cols=187 Identities=20% Similarity=0.257 Sum_probs=136.8
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC------------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA------------ 287 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~------------ 287 (502)
..++|.+|++++|++.+++.+..++... ..+.++||+||||||||++|+++|+.++.
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 3578889999999999999998887432 23456899999999999999999998753
Q ss_pred ------------ceEEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHH
Q psy2637 288 ------------TFFSISAASLTSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEF 351 (502)
Q Consensus 288 ------------~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~l 351 (502)
.++.++++.- .....++.+.+.+.. ....+|||||+|.+.. ..+..|
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~L 137 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNAL 137 (472)
T ss_pred HHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHHH
Confidence 2444443211 111223344443332 2346999999998832 123455
Q ss_pred HHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCC
Q psy2637 352 LLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYS 431 (502)
Q Consensus 352 l~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s 431 (502)
+..++. ++..+++|++|+.+..+++++.+|+. .+.|.+|+.++...+++..+...+..+++..+..|+..+.|..
T Consensus 138 Lk~LE~----p~~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~Gdl 212 (472)
T PRK14962 138 LKTLEE----PPSHVVFVLATTNLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGL 212 (472)
T ss_pred HHHHHh----CCCcEEEEEEeCChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 555543 23457777777777899999999995 8999999999999999999988888999999999999988765
Q ss_pred HHHHHHHH
Q psy2637 432 GSDLTNLA 439 (502)
Q Consensus 432 ~~dL~~L~ 439 (502)
+..+..|.
T Consensus 213 R~aln~Le 220 (472)
T PRK14962 213 RDALTMLE 220 (472)
T ss_pred HHHHHHHH
Confidence 55544443
No 80
>KOG0989|consensus
Probab=99.74 E-value=2.1e-16 Score=153.51 Aligned_cols=195 Identities=24% Similarity=0.312 Sum_probs=146.9
Q ss_pred HhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc------eEE
Q psy2637 218 ILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT------FFS 291 (502)
Q Consensus 218 ~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~------fv~ 291 (502)
+.+.+.|.+|+++.|++.+++.|...+.. ....++|||||||||||+.|+++|++++.+ +..
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 34557888999999999999999998832 224789999999999999999999998652 233
Q ss_pred eeccchhhhhhhhhHHHHHHHHHHHHhc---------CC-eEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCC
Q psy2637 292 ISAASLTSKYVGQGEKLVRALFAMAREL---------QP-SIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSN 361 (502)
Q Consensus 292 i~~s~l~~~~~g~~~~~~~~lf~~a~~~---------~p-~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 361 (502)
.|.++..+..+... .+ .-|+..... +| .|++|||.|.|..+ .+..|.+.++..
T Consensus 94 lnaSderGisvvr~--Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-----------aq~aLrr~mE~~--- 156 (346)
T KOG0989|consen 94 LNASDERGISVVRE--KI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-----------AQAALRRTMEDF--- 156 (346)
T ss_pred hcccccccccchhh--hh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHH-----------HHHHHHHHHhcc---
Confidence 44444444322111 11 112222211 22 69999999988432 344566666643
Q ss_pred CCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2637 362 SEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKD 441 (502)
Q Consensus 362 ~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~ 441 (502)
...+++|..||..+.+...+.+|+. .+.|+....+.....++..+.+.+..+++..++.+++.++|.-.+++..|..-
T Consensus 157 -s~~trFiLIcnylsrii~pi~SRC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsl 234 (346)
T KOG0989|consen 157 -SRTTRFILICNYLSRIIRPLVSRCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSL 234 (346)
T ss_pred -ccceEEEEEcCChhhCChHHHhhHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 2347888899999999999999997 78999999999999999999999999999999999999999888777766665
Q ss_pred HH
Q psy2637 442 AA 443 (502)
Q Consensus 442 a~ 443 (502)
+.
T Consensus 235 s~ 236 (346)
T KOG0989|consen 235 SL 236 (346)
T ss_pred hc
Confidence 44
No 81
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=3.7e-16 Score=168.01 Aligned_cols=190 Identities=22% Similarity=0.240 Sum_probs=139.4
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC------------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA------------ 287 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~------------ 287 (502)
.+++|.+|++++|++.+++.|..++... ..+..+||+||+|+|||++|+++|+.+++
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 3478889999999999999999988422 22467899999999999999999998854
Q ss_pred ------------ceEEeeccchhhhhhhhhHHHHHHHHHHHH----hcCCeEEEEcCCcchhcccccChhHHHHHHHHHH
Q psy2637 288 ------------TFFSISAASLTSKYVGQGEKLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEF 351 (502)
Q Consensus 288 ------------~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~l 351 (502)
.++.++.+.- .....++.+.+.+. ..+..|++|||+|.|... ..+.|
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-----------A~NAL 138 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-----------SFNAL 138 (702)
T ss_pred HHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-----------HHHHH
Confidence 2233333211 01122344444332 124469999999988321 34456
Q ss_pred HHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCC
Q psy2637 352 LLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYS 431 (502)
Q Consensus 352 l~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s 431 (502)
+..++. ++..+.+|.+|+.+..+...+++|+. .+.|..++.++....+...+.+.+..+++..+..++..+.|.
T Consensus 139 LKtLEE----PP~~v~FILaTtd~~kIp~TIlSRCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~Gd- 212 (702)
T PRK14960 139 LKTLEE----PPEHVKFLFATTDPQKLPITVISRCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGS- 212 (702)
T ss_pred HHHHhc----CCCCcEEEEEECChHhhhHHHHHhhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 666653 33457888888888889899999995 899999999999999999999999999999999999999874
Q ss_pred HHHHHHHHHHHH
Q psy2637 432 GSDLTNLAKDAA 443 (502)
Q Consensus 432 ~~dL~~L~~~a~ 443 (502)
.+++.+++..+.
T Consensus 213 LRdALnLLDQaI 224 (702)
T PRK14960 213 LRDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHHHH
Confidence 444444544443
No 82
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=5.3e-16 Score=171.29 Aligned_cols=196 Identities=21% Similarity=0.248 Sum_probs=139.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceE-E-eecc--
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFF-S-ISAA-- 295 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv-~-i~~s-- 295 (502)
.+++|.+|++|+|++.+++.|+.++... ..+..+||+||+|||||++|+++|+.+++.-. . ..|.
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 3478889999999999999999888432 12455699999999999999999999865310 0 0111
Q ss_pred ----chhhh-------hhh---hhHHHHHHHHHHHH----hcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc
Q psy2637 296 ----SLTSK-------YVG---QGEKLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG 357 (502)
Q Consensus 296 ----~l~~~-------~~g---~~~~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g 357 (502)
.+... +-+ .....++.+.+.+. ..+..|+||||+|.|. ...++.|+..++
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNALLKtLE- 144 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNALLKTLE- 144 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHHHh-
Confidence 11100 000 11122344443332 2234699999999883 234566777665
Q ss_pred CCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHH
Q psy2637 358 LHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTN 437 (502)
Q Consensus 358 ~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~ 437 (502)
.++..+++|.+|+.+..|.+.+++|+. .+.|..++.++....++..+...+..+++..+..|+..+.|..+ ++.+
T Consensus 145 ---EPP~~vrFILaTTe~~kLl~TIlSRCq-~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R-~ALn 219 (944)
T PRK14949 145 ---EPPEHVKFLLATTDPQKLPVTVLSRCL-QFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMR-DALS 219 (944)
T ss_pred ---ccCCCeEEEEECCCchhchHHHHHhhe-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHH
Confidence 345568888889988899999999995 89999999999999999999888888899999999999988555 4445
Q ss_pred HHHHHH
Q psy2637 438 LAKDAA 443 (502)
Q Consensus 438 L~~~a~ 443 (502)
++..+.
T Consensus 220 LLdQal 225 (944)
T PRK14949 220 LTDQAI 225 (944)
T ss_pred HHHHHH
Confidence 554443
No 83
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=3.4e-16 Score=167.83 Aligned_cols=190 Identities=22% Similarity=0.239 Sum_probs=140.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc-----------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT----------- 288 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~----------- 288 (502)
.++.|.+|++++|++.+++.|..++... ..+..+||+||+|||||++|+.+|+.++..
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 3578899999999999999999998432 224568999999999999999999988542
Q ss_pred -------------eEEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHH
Q psy2637 289 -------------FFSISAASLTSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEF 351 (502)
Q Consensus 289 -------------fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~l 351 (502)
++.++.+.- ..-..++.+.+.+.. .+..|++|||+|.|... ..+.|
T Consensus 77 ~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-----------a~naL 139 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-----------SFNAL 139 (509)
T ss_pred HHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-----------HHHHH
Confidence 333333211 111223444443321 23469999999988422 34456
Q ss_pred HHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCC
Q psy2637 352 LLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYS 431 (502)
Q Consensus 352 l~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s 431 (502)
+..++. ++..+.+|.+|+.+..+.+.+++|+. .+.|..++..+....+...+.+.+..+++..+..++..+.| +
T Consensus 140 Lk~LEe----pp~~~~fIlattd~~kl~~tI~SRc~-~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 140 LKTLEE----PPSHVKFILATTDHHKLPVTVLSRCL-QFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred HHHHhc----cCCCeEEEEEECChHhchHHHHHHhh-hhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 666653 34568888888888889889999995 89999999999999999999999999999999999999887 5
Q ss_pred HHHHHHHHHHHH
Q psy2637 432 GSDLTNLAKDAA 443 (502)
Q Consensus 432 ~~dL~~L~~~a~ 443 (502)
.+++.+++..++
T Consensus 214 lR~al~lLdq~i 225 (509)
T PRK14958 214 VRDALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHHHH
Confidence 556666665544
No 84
>PLN03025 replication factor C subunit; Provisional
Probab=99.72 E-value=8.7e-16 Score=156.38 Aligned_cols=187 Identities=22% Similarity=0.246 Sum_probs=137.6
Q ss_pred hcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc-----CceEEee
Q psy2637 219 LEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN-----ATFFSIS 293 (502)
Q Consensus 219 ~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~i~ 293 (502)
.+++.|.++++++|++.+++.+..++... ..+++||+||||||||++|+++|+++. ..++.++
T Consensus 4 ~~kyrP~~l~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAVSRLQVIARDG------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhhcCCCCHHHhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 45688999999999999999998887322 125699999999999999999999872 2356666
Q ss_pred ccchhhhhhhhhHHHHHHHHHHH-H------hcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcE
Q psy2637 294 AASLTSKYVGQGEKLVRALFAMA-R------ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRL 366 (502)
Q Consensus 294 ~s~l~~~~~g~~~~~~~~lf~~a-~------~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v 366 (502)
.++..+. ..++..+... . ...+.+++|||+|.|... .++.|+..++. .+..+
T Consensus 72 ~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-----------aq~aL~~~lE~----~~~~t 130 (319)
T PLN03025 72 ASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-----------AQQALRRTMEI----YSNTT 130 (319)
T ss_pred ccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-----------HHHHHHHHHhc----ccCCc
Confidence 6543221 1122222211 1 123579999999988432 23334444442 22335
Q ss_pred EEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHH
Q psy2637 367 LVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLA 439 (502)
Q Consensus 367 ~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~ 439 (502)
++|.+||....+.+++++|+. .+.|+.|+.++....+...+.+.+..+++..++.++..+.|..+..+..|.
T Consensus 131 ~~il~~n~~~~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq 202 (319)
T PLN03025 131 RFALACNTSSKIIEPIQSRCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQ 202 (319)
T ss_pred eEEEEeCCccccchhHHHhhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 677788888889999999995 899999999999999999999999999999999999999886665555553
No 85
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=4e-16 Score=161.49 Aligned_cols=196 Identities=20% Similarity=0.201 Sum_probs=136.5
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceE--Ee-----
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFF--SI----- 292 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv--~i----- 292 (502)
+++.|.+|++++|++.+++.+...+... ..+..+||+||+|+|||++|+++|+.++.... .-
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 3578889999999999999999887432 22456799999999999999999998853210 00
Q ss_pred -eccchhhh----h---h---hhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc
Q psy2637 293 -SAASLTSK----Y---V---GQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG 357 (502)
Q Consensus 293 -~~s~l~~~----~---~---g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g 357 (502)
+|..+... + . ......++.+.+.+.. ....+++|||+|.+.. ..++.++..++.
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naLLk~lEe 145 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNALLKTLEE 145 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHHHHHHhc
Confidence 11111000 0 0 0111223444444332 1336999999998832 123445655543
Q ss_pred CCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHH
Q psy2637 358 LHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTN 437 (502)
Q Consensus 358 ~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~ 437 (502)
++..+.+|.+|+.++.+.+++.+|+. .+.|++|+.++..+++...+...+..+++..+..++..+.|. ++++.+
T Consensus 146 ----~~~~~~fIl~t~~~~~l~~tI~SRc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~-~R~al~ 219 (363)
T PRK14961 146 ----PPQHIKFILATTDVEKIPKTILSRCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGS-MRDALN 219 (363)
T ss_pred ----CCCCeEEEEEcCChHhhhHHHHhhce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHH
Confidence 34457778788888889999999995 899999999999999999999988889999999999999874 444445
Q ss_pred HHHHHH
Q psy2637 438 LAKDAA 443 (502)
Q Consensus 438 L~~~a~ 443 (502)
++..++
T Consensus 220 ~l~~~~ 225 (363)
T PRK14961 220 LLEHAI 225 (363)
T ss_pred HHHHHH
Confidence 555443
No 86
>PRK04195 replication factor C large subunit; Provisional
Probab=99.71 E-value=3.7e-16 Score=167.68 Aligned_cols=195 Identities=22% Similarity=0.302 Sum_probs=144.7
Q ss_pred HhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccch
Q psy2637 218 ILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297 (502)
Q Consensus 218 ~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l 297 (502)
+++.+.|.++++++|++.+++.+..++.... -+.++.++||+||||||||++|+++|++++.+++.+|+++.
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~--------~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWL--------KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 3456889999999999999999999984321 12346889999999999999999999999999999998765
Q ss_pred hhhhhhhhHHHHHHHHHHHHh------cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEE
Q psy2637 298 TSKYVGQGEKLVRALFAMARE------LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGA 371 (502)
Q Consensus 298 ~~~~~g~~~~~~~~lf~~a~~------~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaa 371 (502)
... ..+..+...+.. ..+.+|+|||+|.+...... .....++..+.. .+..+|++
T Consensus 76 r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~-------~~~~aL~~~l~~------~~~~iIli 136 (482)
T PRK04195 76 RTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDR-------GGARAILELIKK------AKQPIILT 136 (482)
T ss_pred ccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccch-------hHHHHHHHHHHc------CCCCEEEe
Confidence 431 112222222221 24579999999998542111 122334444431 12356667
Q ss_pred cCCCCCCcH-HHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy2637 372 TNRPQELDE-AVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAK 440 (502)
Q Consensus 372 TN~~~~l~~-~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~ 440 (502)
+|.+..+.. .+++|+ ..|.|+.|+.++...++...+...+..+++..++.|+..+.|.-...+..|..
T Consensus 137 ~n~~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~ 205 (482)
T PRK04195 137 ANDPYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQA 205 (482)
T ss_pred ccCccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 888888777 677777 48999999999999999999999999999999999999998876666666655
No 87
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=1.6e-15 Score=164.98 Aligned_cols=188 Identities=24% Similarity=0.314 Sum_probs=139.3
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc------------
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT------------ 288 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~------------ 288 (502)
++.|.+|++++|++.+++.|...+... ..+..+||+||+|+|||++|+.+|+.+++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 467889999999999999999888432 123557999999999999999999988542
Q ss_pred ------------eEEeeccchhhhhhhhhHHHHHHHHHHHH----hcCCeEEEEcCCcchhcccccChhHHHHHHHHHHH
Q psy2637 289 ------------FFSISAASLTSKYVGQGEKLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFL 352 (502)
Q Consensus 289 ------------fv~i~~s~l~~~~~g~~~~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll 352 (502)
++.++.+.- .....++.+.+.+. .....|+||||+|.|.. ..++.|+
T Consensus 78 ~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NALL 140 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL 140 (647)
T ss_pred HHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHHH
Confidence 222222210 01122344443332 22446999999998832 2455677
Q ss_pred HHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCH
Q psy2637 353 LEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSG 432 (502)
Q Consensus 353 ~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~ 432 (502)
..++ .++..+++|.+|+.++.|.+.+++|+ ..+.|..++.++....+...+...+..+++..+..++..+.|..+
T Consensus 141 KtLE----EPp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 141 KTLE----EPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMR 215 (647)
T ss_pred HHHH----cCCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 7665 34556888888999999999999998 489999999999999999999888888899999999999998666
Q ss_pred HHHHHHHHHH
Q psy2637 433 SDLTNLAKDA 442 (502)
Q Consensus 433 ~dL~~L~~~a 442 (502)
..+. ++..+
T Consensus 216 ~Al~-lldqa 224 (647)
T PRK07994 216 DALS-LTDQA 224 (647)
T ss_pred HHHH-HHHHH
Confidence 5554 44433
No 88
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=1e-15 Score=163.27 Aligned_cols=195 Identities=23% Similarity=0.269 Sum_probs=140.3
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceE----------
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFF---------- 290 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv---------- 290 (502)
.+.|.+|++++|++.+.+.+...+... ..+.++||+||+|||||++|+++|+.++...-
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 478889999999999999998876332 23578999999999999999999998854210
Q ss_pred --Eeeccchhhh----h------hhhhHHHHHHHHHHHHhc----CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHH
Q psy2637 291 --SISAASLTSK----Y------VGQGEKLVRALFAMAREL----QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLE 354 (502)
Q Consensus 291 --~i~~s~l~~~----~------~g~~~~~~~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~ 354 (502)
.-+|..+... + .......++.+++.+... ...|++|||+|.|.. ..++.|+..
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLLk~ 151 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALLKT 151 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHHHH
Confidence 0111111110 0 011223455666655432 346999999998832 234455655
Q ss_pred hccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHH
Q psy2637 355 FDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSD 434 (502)
Q Consensus 355 l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~d 434 (502)
++ .++..+++|.+|+.++.+.+.+.+|+. .+.|..++.++...++...+.+.+..+++..+..++..++| +.++
T Consensus 152 LE----epp~~~vfI~aTte~~kI~~tI~SRc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~ 225 (507)
T PRK06645 152 LE----EPPPHIIFIFATTEVQKIPATIISRCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARD 225 (507)
T ss_pred Hh----hcCCCEEEEEEeCChHHhhHHHHhcce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 55 234567888888888899999999995 89999999999999999999999998999999999999987 4445
Q ss_pred HHHHHHHHH
Q psy2637 435 LTNLAKDAA 443 (502)
Q Consensus 435 L~~L~~~a~ 443 (502)
+.+++..+.
T Consensus 226 al~~Ldkai 234 (507)
T PRK06645 226 AVSILDQAA 234 (507)
T ss_pred HHHHHHHHH
Confidence 545544443
No 89
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.2e-15 Score=162.57 Aligned_cols=202 Identities=23% Similarity=0.328 Sum_probs=148.3
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCC---CCCcceEEecCCCCcHHHHHHHHHHHcc---CceEEeeccchhhh-
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLR---TPSRGLLLFGPPGNGKTMLARAVATACN---ATFFSISAASLTSK- 300 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~---~~~~~vLL~GppGtGKT~lAraia~~~~---~~fv~i~~s~l~~~- 300 (502)
..++||+.+...+.+.+.... .++. .|..++||.||+|+|||.+|+++|..+. ..++++|+++++.+
T Consensus 491 ~rViGQd~AV~avs~aIrraR------aGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRAR------AGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHh------cCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH
Confidence 359999999999999985432 3443 3445689999999999999999999994 78999999999753
Q ss_pred -----------hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCC-CCCC-----
Q psy2637 301 -----------YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLH-SNSE----- 363 (502)
Q Consensus 301 -----------~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~-~~~~----- 363 (502)
|+|..+. ..+.+..++..++||+||||++. +.++++.|++.++... .+..
T Consensus 565 sVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKA-----------HpdV~nilLQVlDdGrLTD~~Gr~Vd 631 (786)
T COG0542 565 SVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKA-----------HPDVFNLLLQVLDDGRLTDGQGRTVD 631 (786)
T ss_pred HHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhc-----------CHHHHHHHHHHhcCCeeecCCCCEEe
Confidence 5555442 45667777777899999999866 4558888999987332 1111
Q ss_pred -CcEEEEEEcCCCC----------------------------CCcHHHHccccceeeecCCCHHHHHHHHHHHHhhc---
Q psy2637 364 -HRLLVMGATNRPQ----------------------------ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKH--- 411 (502)
Q Consensus 364 -~~v~vIaaTN~~~----------------------------~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~--- 411 (502)
.+++||+|||.-. .+.|+++.|++.+|.|.+.+.+...+|+...+.+.
T Consensus 632 FrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~ 711 (786)
T COG0542 632 FRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKR 711 (786)
T ss_pred cceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence 3578999998421 23577788999999999999999999998887652
Q ss_pred ------CCCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhhHH
Q psy2637 412 ------GNPLSQLELDAVAKLTE--GYSGSDLTNLAKDAALGPIR 448 (502)
Q Consensus 412 ------~~~l~~~~l~~la~~t~--g~s~~dL~~L~~~a~~~air 448 (502)
...+++...+.++...- .|-++-|+.+++.-....+.
T Consensus 712 L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La 756 (786)
T COG0542 712 LAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLA 756 (786)
T ss_pred HHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHH
Confidence 22356677777776653 45566677666655544443
No 90
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.69 E-value=1.4e-15 Score=172.05 Aligned_cols=197 Identities=20% Similarity=0.298 Sum_probs=147.5
Q ss_pred HHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc------
Q psy2637 212 QVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC------ 285 (502)
Q Consensus 212 ~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~------ 285 (502)
+.+...+.....+..++.++|++.....+.+.+... ...+++|+||||||||++|+.+|+.+
T Consensus 171 ~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~------------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~ 238 (852)
T TIGR03345 171 DQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRR------------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVP 238 (852)
T ss_pred HHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcC------------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 344455555566778999999999877777665322 23688999999999999999999976
Q ss_pred ----cCceEEeeccchh--hhhhhhhHHHHHHHHHHHHh-cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC
Q psy2637 286 ----NATFFSISAASLT--SKYVGQGEKLVRALFAMARE-LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL 358 (502)
Q Consensus 286 ----~~~fv~i~~s~l~--~~~~g~~~~~~~~lf~~a~~-~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~ 358 (502)
+..++.++.+.+. ..+.|+.+..++.+++.+.. ..+.|||||||+.+.+.+....+.. ..+.|...+.
T Consensus 239 ~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d---~~n~Lkp~l~-- 313 (852)
T TIGR03345 239 PALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGD---AANLLKPALA-- 313 (852)
T ss_pred ccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccccc---HHHHhhHHhh--
Confidence 2457777777765 35788888999999998865 3568999999999986543211111 1122333332
Q ss_pred CCCCCCcEEEEEEcCCC-----CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHhcCC
Q psy2637 359 HSNSEHRLLVMGATNRP-----QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK----HGNPLSQLELDAVAKLTEG 429 (502)
Q Consensus 359 ~~~~~~~v~vIaaTN~~-----~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~----~~~~l~~~~l~~la~~t~g 429 (502)
.+.+.+|+||+.. -.+++++.|||. .|.++.|+.+++..|++.+... +++.+++..+..++..+.+
T Consensus 314 ----~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 314 ----RGELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred ----CCCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 2458999999864 358999999996 8999999999999997766543 4567899999999998886
Q ss_pred C
Q psy2637 430 Y 430 (502)
Q Consensus 430 ~ 430 (502)
|
T Consensus 389 y 389 (852)
T TIGR03345 389 Y 389 (852)
T ss_pred c
Confidence 6
No 91
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=3.1e-15 Score=158.49 Aligned_cols=190 Identities=21% Similarity=0.260 Sum_probs=142.4
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC-------------
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA------------- 287 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~------------- 287 (502)
++.|.+|++++|++.+++.+..++... ..+.++||+||+|+|||++|+.+|+.+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~-----------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLN-----------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 478889999999999999998887332 23568999999999999999999996532
Q ss_pred -----------ceEEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHH
Q psy2637 288 -----------TFFSISAASLTSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFL 352 (502)
Q Consensus 288 -----------~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll 352 (502)
.++.+++++-. ..+.++.+.+.+.. ....+++|||+|.|.. ..++.|+
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaLL 137 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNALL 137 (491)
T ss_pred HHHHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHHH
Confidence 23444443211 12334555555432 2346999999998832 2345566
Q ss_pred HHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCH
Q psy2637 353 LEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSG 432 (502)
Q Consensus 353 ~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~ 432 (502)
..++. ++..+.+|.+|+.+..+.+.+.+|+. .+.|..++.++..+.+...+.+.+..+++..++.+++.+.| +.
T Consensus 138 K~LEe----Pp~~v~fIlatte~~Kl~~tI~SRc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 138 KTLEE----PAPHVKFILATTEVKKIPVTIISRCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred HHHhC----CCCCeEEEEEeCChHHHHHHHHHhhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 66653 34567888888888889999999995 89999999999999999999999999999999999999987 55
Q ss_pred HHHHHHHHHHHh
Q psy2637 433 SDLTNLAKDAAL 444 (502)
Q Consensus 433 ~dL~~L~~~a~~ 444 (502)
+++.+++..+..
T Consensus 212 R~alslLdqli~ 223 (491)
T PRK14964 212 RNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 92
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.69 E-value=2.9e-15 Score=157.75 Aligned_cols=184 Identities=29% Similarity=0.411 Sum_probs=131.2
Q ss_pred CCCCCCcccccChHHHHHH---HHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccch
Q psy2637 221 GGSPVQWQDIAGQEVAKQA---LHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~---l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l 297 (502)
...|.++++++|++..... +..++... ...+++|+||||||||++|+++++.++.+|+.+++...
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~------------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIEAG------------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHHcC------------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 4677899999999998666 77777321 23589999999999999999999999999999987643
Q ss_pred hhhhhhhhHHHHHHHHHHHH----hcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcC
Q psy2637 298 TSKYVGQGEKLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATN 373 (502)
Q Consensus 298 ~~~~~g~~~~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN 373 (502)
. ...++.+++.+. .....+|||||+|.+... .+..|+..++. ..+++|++|+
T Consensus 73 ~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-----------~q~~LL~~le~------~~iilI~att 128 (413)
T PRK13342 73 G-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-----------QQDALLPHVED------GTITLIGATT 128 (413)
T ss_pred c-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-----------HHHHHHHHhhc------CcEEEEEeCC
Confidence 2 122344444442 224579999999987321 23344544442 2366776653
Q ss_pred --CCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhc--CC-CCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2637 374 --RPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKH--GN-PLSQLELDAVAKLTEGYSGSDLTNLAKDA 442 (502)
Q Consensus 374 --~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~--~~-~l~~~~l~~la~~t~g~s~~dL~~L~~~a 442 (502)
....+++++++|+ .++.+++|+.++...++...+... +. .+++..++.++..+.|.... +.++++.+
T Consensus 129 ~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~-aln~Le~~ 200 (413)
T PRK13342 129 ENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARR-ALNLLELA 200 (413)
T ss_pred CChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHH-HHHHHHHH
Confidence 3458899999999 489999999999999999887653 33 67788888888888664443 33444443
No 93
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.69 E-value=1.1e-14 Score=159.76 Aligned_cols=231 Identities=20% Similarity=0.288 Sum_probs=146.4
Q ss_pred hcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc----------cCc
Q psy2637 219 LEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC----------NAT 288 (502)
Q Consensus 219 ~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~ 288 (502)
.....+.+|++++|++.+++.+...+.. ..+.+++|+||||||||++|+.+++.. +.+
T Consensus 145 ~~~~rp~~~~~iiGqs~~~~~l~~~ia~------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~ 212 (615)
T TIGR02903 145 QSLLRPRAFSEIVGQERAIKALLAKVAS------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAP 212 (615)
T ss_pred hhhcCcCcHHhceeCcHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCC
Confidence 3445678999999999999988766522 224679999999999999999998765 357
Q ss_pred eEEeeccchhh-------hhhhhhHHHH----HHHHH----------HHHhcCCeEEEEcCCcchhcccccChhHHHHHH
Q psy2637 289 FFSISAASLTS-------KYVGQGEKLV----RALFA----------MARELQPSIIFIDEVDSVLSERKEGEHEASRRL 347 (502)
Q Consensus 289 fv~i~~s~l~~-------~~~g~~~~~~----~~lf~----------~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~ 347 (502)
|+.++|..+.. .+.+...... ...++ .......++|||||++.|... .
T Consensus 213 fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-----------~ 281 (615)
T TIGR02903 213 FVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-----------L 281 (615)
T ss_pred eEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-----------H
Confidence 99999876521 1112111000 00000 011223479999999988332 2
Q ss_pred HHHHHHHhccC------------------------CCCCCCcEEEEEEc-CCCCCCcHHHHccccceeeecCCCHHHHHH
Q psy2637 348 KTEFLLEFDGL------------------------HSNSEHRLLVMGAT-NRPQELDEAVLRRFSKRIYVTLPDSKTRKS 402 (502)
Q Consensus 348 ~~~ll~~l~g~------------------------~~~~~~~v~vIaaT-N~~~~l~~~l~rRf~~~I~i~~P~~~er~~ 402 (502)
+..++..++.. ....+.++++|++| +.++.+++++++||. .+.+++++.++..+
T Consensus 282 Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~ 360 (615)
T TIGR02903 282 QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHH
Confidence 23333333211 01122346666655 567889999999996 78999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhc
Q psy2637 403 LLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIR 479 (502)
Q Consensus 403 il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~ 479 (502)
+++..+.+.+..+++..++.++..+.. .+..+. ++..+...+..+.... ........|+.+|+.+++...+
T Consensus 361 Il~~~a~~~~v~ls~eal~~L~~ys~~-gRraln-~L~~~~~~~~~~~~~~----~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 361 IVLNAAEKINVHLAAGVEELIARYTIE-GRKAVN-ILADVYGYALYRAAEA----GKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHCCCc-HHHHHH-HHHHHHHHHHHHHHHh----ccCCCCeeECHHHHHHHhCCCc
Confidence 999999887777888888888776541 133443 3333433322221100 0011234799999999987654
No 94
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=3.6e-15 Score=162.02 Aligned_cols=190 Identities=25% Similarity=0.304 Sum_probs=138.6
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc-----------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT----------- 288 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~----------- 288 (502)
.++.|.+|++++|++.+++.|..++... ..+..+||+||+|||||++|+.+|+.+++.
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 3578889999999999999999988432 224567999999999999999999988531
Q ss_pred ------------------eEEeeccchhhhhhhhhHHHHHHHHHHHHhc----CCeEEEEcCCcchhcccccChhHHHHH
Q psy2637 289 ------------------FFSISAASLTSKYVGQGEKLVRALFAMAREL----QPSIIFIDEVDSVLSERKEGEHEASRR 346 (502)
Q Consensus 289 ------------------fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~~~~~~~~ 346 (502)
++.++.+. ...-..++.+.+.+... +..|++|||+|.|...
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~----------- 139 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT----------- 139 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-----------
Confidence 12222111 01122345555544321 2369999999988322
Q ss_pred HHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Q psy2637 347 LKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKL 426 (502)
Q Consensus 347 ~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~ 426 (502)
.++.|+..++ .++..+.+|.+|+.+..+...+++|+. .+.|..++.++..+.++..+.+.+..+++..+..|+..
T Consensus 140 a~NaLLKtLE----EPP~~~~fIL~Ttd~~kil~TIlSRc~-~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~ 214 (618)
T PRK14951 140 AFNAMLKTLE----EPPEYLKFVLATTDPQKVPVTVLSRCL-QFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARA 214 (618)
T ss_pred HHHHHHHhcc----cCCCCeEEEEEECCchhhhHHHHHhce-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 2445666554 244567888888888888889999995 89999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy2637 427 TEGYSGSDLTNLAKDAA 443 (502)
Q Consensus 427 t~g~s~~dL~~L~~~a~ 443 (502)
+.| +.+++.+++..+.
T Consensus 215 s~G-slR~al~lLdq~i 230 (618)
T PRK14951 215 ARG-SMRDALSLTDQAI 230 (618)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 987 4445555554443
No 95
>KOG0743|consensus
Probab=99.68 E-value=8.4e-16 Score=156.94 Aligned_cols=203 Identities=23% Similarity=0.372 Sum_probs=154.0
Q ss_pred CCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCC-CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhh
Q psy2637 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTP-SRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYV 302 (502)
Q Consensus 224 ~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~-~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~ 302 (502)
|.+|+.++-....++.|.+-+......++++.+++.+ .++.|||||||||||+++.|+|+.++..++-++.++....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 4688899999999999998888888889999998866 4789999999999999999999999999988887765443
Q ss_pred hhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChh-----H--HHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 303 GQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEH-----E--ASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 303 g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~-----~--~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
.. ++.++-.. .+.+||+|.+||.-+.-+..... + ...-.+.-||..++|+.+..+..-+||.|||..
T Consensus 275 ---~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 ---SD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred ---HH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 11 34443322 23489999999987643222111 0 122345668999999988876667888999999
Q ss_pred CCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCC--CCHHHHHH
Q psy2637 376 QELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEG--YSGSDLTN 437 (502)
Q Consensus 376 ~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g--~s~~dL~~ 437 (502)
+.|||+++| |++..|++..-+...-..++..++.... +..-+.++.+..++ .||+++..
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---CcchhHHHHHHhhcCccCHHHHHH
Confidence 999999999 9999999999999999999999886432 22223344433333 68888753
No 96
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.68 E-value=3.6e-15 Score=152.64 Aligned_cols=184 Identities=21% Similarity=0.282 Sum_probs=130.3
Q ss_pred hcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc-----CceEEee
Q psy2637 219 LEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN-----ATFFSIS 293 (502)
Q Consensus 219 ~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~i~ 293 (502)
.+++.|.+|++++|++.+++.+..++..+ ..++++|+||||||||++|+++++.+. .+++.++
T Consensus 6 ~~ky~P~~~~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~ 73 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVVERLSRAVDSP------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN 73 (337)
T ss_pred HHhhCCCcHHHhcCCHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec
Confidence 34578889999999999999999887322 124799999999999999999999873 3577888
Q ss_pred ccchhhhh-------------hhh-------hHHHHHHHHHHHHh-----cCCeEEEEcCCcchhcccccChhHHHHHHH
Q psy2637 294 AASLTSKY-------------VGQ-------GEKLVRALFAMARE-----LQPSIIFIDEVDSVLSERKEGEHEASRRLK 348 (502)
Q Consensus 294 ~s~l~~~~-------------~g~-------~~~~~~~lf~~a~~-----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~ 348 (502)
+.++.... .+. ....++.+...... ..+.+|+|||+|.+... .+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-----------~~ 142 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-----------AQ 142 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-----------HH
Confidence 87653211 000 01122333323222 23469999999988321 12
Q ss_pred HHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcC
Q psy2637 349 TEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTE 428 (502)
Q Consensus 349 ~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~ 428 (502)
..+...++.. +..+++|.+++.+..+.+.+.+|+. .+.+.+|+.++..+++...+.+.+..+++..++.++..+.
T Consensus 143 ~~L~~~le~~----~~~~~~Il~~~~~~~~~~~L~sr~~-~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~ 217 (337)
T PRK12402 143 QALRRIMEQY----SRTCRFIIATRQPSKLIPPIRSRCL-PLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG 217 (337)
T ss_pred HHHHHHHHhc----cCCCeEEEEeCChhhCchhhcCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 2333344322 1234566677666677788889984 8999999999999999999999998899999999999886
Q ss_pred CC
Q psy2637 429 GY 430 (502)
Q Consensus 429 g~ 430 (502)
|.
T Consensus 218 gd 219 (337)
T PRK12402 218 GD 219 (337)
T ss_pred CC
Confidence 53
No 97
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=2.4e-15 Score=162.45 Aligned_cols=187 Identities=21% Similarity=0.265 Sum_probs=137.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc-----------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT----------- 288 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~----------- 288 (502)
..+.|.+|++|+|++.+++.|..++... .....+||+||+|||||++|+.+|+.+...
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 4578889999999999999999988432 124678999999999999999999988542
Q ss_pred -------------eEEeeccchhhhhhhhhHHHHHHHHHHHH----hcCCeEEEEcCCcchhcccccChhHHHHHHHHHH
Q psy2637 289 -------------FFSISAASLTSKYVGQGEKLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEF 351 (502)
Q Consensus 289 -------------fv~i~~s~l~~~~~g~~~~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~l 351 (502)
++.++.+.- ..+ ..++.+.+.+. .....||||||+|.|.. ..++.|
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~--~~I----d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~naL 139 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASN--RGI----DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNAL 139 (624)
T ss_pred HHHHHHhcCCCCceEEEecccc--cCH----HHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHHH
Confidence 233332110 011 11222222222 22447999999998832 234556
Q ss_pred HHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCC
Q psy2637 352 LLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYS 431 (502)
Q Consensus 352 l~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s 431 (502)
+..++. +...+++|.+|+.+..+...+++|+. .+.|+.++.++...++...+.+.+..+++..++.++..+.|..
T Consensus 140 Lk~LEE----P~~~~ifILaTt~~~kll~TI~SRcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gdl 214 (624)
T PRK14959 140 LKTLEE----PPARVTFVLATTEPHKFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSV 214 (624)
T ss_pred HHHhhc----cCCCEEEEEecCChhhhhHHHHhhhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 666653 23457888889888888889999995 8999999999999999999998888899999999999998866
Q ss_pred HHHHHHHH
Q psy2637 432 GSDLTNLA 439 (502)
Q Consensus 432 ~~dL~~L~ 439 (502)
+..+..|-
T Consensus 215 R~Al~lLe 222 (624)
T PRK14959 215 RDSMSLLG 222 (624)
T ss_pred HHHHHHHH
Confidence 66665554
No 98
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=4.9e-15 Score=160.75 Aligned_cols=196 Identities=20% Similarity=0.251 Sum_probs=140.5
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceE--Eeecc--
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFF--SISAA-- 295 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv--~i~~s-- 295 (502)
.++.|.+|++|+|++.+++.|..++... ..+..+||+||+|+|||++|+.+++.++++-. ...|.
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 3578899999999999999999988432 23567899999999999999999998753210 01111
Q ss_pred ----chhh-hh---------hhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc
Q psy2637 296 ----SLTS-KY---------VGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG 357 (502)
Q Consensus 296 ----~l~~-~~---------~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g 357 (502)
.+.. .+ .+.....++.+++.+.. ....|+||||+|.|.. ..++.|+..++.
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NALLKtLEE 145 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAMLKTLEE 145 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHHHHHHHh
Confidence 0000 00 01112334555554321 2347999999998732 234456666653
Q ss_pred CCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHH
Q psy2637 358 LHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTN 437 (502)
Q Consensus 358 ~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~ 437 (502)
++..+.+|.+|+.+..+...+++||. .+.|..++.++....+...+...+..+++..+..|++.+.|- .+++.+
T Consensus 146 ----Pp~~v~fILaTtd~~kL~~TIrSRC~-~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~Gs-lRdAln 219 (709)
T PRK08691 146 ----PPEHVKFILATTDPHKVPVTVLSRCL-QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGS-MRDALS 219 (709)
T ss_pred ----CCCCcEEEEEeCCccccchHHHHHHh-hhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCC-HHHHHH
Confidence 33457888888989999999999994 899999999999999999999999999999999999999874 455555
Q ss_pred HHHHHH
Q psy2637 438 LAKDAA 443 (502)
Q Consensus 438 L~~~a~ 443 (502)
++..+.
T Consensus 220 LLDqai 225 (709)
T PRK08691 220 LLDQAI 225 (709)
T ss_pred HHHHHH
Confidence 555444
No 99
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.68 E-value=1.4e-15 Score=154.48 Aligned_cols=191 Identities=15% Similarity=0.166 Sum_probs=131.0
Q ss_pred hcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 219 LEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 219 ~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
.+++.|.++++++|++.+.+.+..++.. +..+..+||+||||+|||++|+++++..+.+++.++++.
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-- 78 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-- 78 (316)
T ss_pred eeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--
Confidence 3567889999999999999999988832 223456667999999999999999999998999999876
Q ss_pred hhhhhhhHHHHHHHHHHHH-hcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCC
Q psy2637 299 SKYVGQGEKLVRALFAMAR-ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQE 377 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~-~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~ 377 (502)
.. .......+........ ...+.+|+|||+|.+... . .+..+...++. ...++++|.+||.+..
T Consensus 79 ~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------~----~~~~L~~~le~----~~~~~~~Ilt~n~~~~ 143 (316)
T PHA02544 79 CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------D----AQRHLRSFMEA----YSKNCSFIITANNKNG 143 (316)
T ss_pred cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------H----HHHHHHHHHHh----cCCCceEEEEcCChhh
Confidence 22 2222222222211111 124689999999987211 1 11222223332 2245788889999999
Q ss_pred CcHHHHccccceeeecCCCHHHHHHHHHHHHh-------hcCCCCCHHHHHHHHHhcCCCCHHHHHHH
Q psy2637 378 LDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLN-------KHGNPLSQLELDAVAKLTEGYSGSDLTNL 438 (502)
Q Consensus 378 l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~-------~~~~~l~~~~l~~la~~t~g~s~~dL~~L 438 (502)
+.+++++||. .+.++.|+.+++.+++..++. ..+..+++..+..++....|-....+..+
T Consensus 144 l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l 210 (316)
T PHA02544 144 IIEPLRSRCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINEL 210 (316)
T ss_pred chHHHHhhce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999996 899999999999877665433 34666777777777776665444433333
No 100
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.68 E-value=1.6e-15 Score=168.77 Aligned_cols=237 Identities=22% Similarity=0.285 Sum_probs=161.6
Q ss_pred HHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-------
Q psy2637 213 VVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC------- 285 (502)
Q Consensus 213 ~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~------- 285 (502)
.+...+......-.++.++|.+..++.+.+.+... ...++||+||||||||++|+.+|...
T Consensus 171 ~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~ 238 (758)
T PRK11034 171 NFTTNLNQLARVGGIDPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPE 238 (758)
T ss_pred HHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 33334444334446788999999999998877321 24778999999999999999999875
Q ss_pred ---cCceEEeeccchh--hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCC
Q psy2637 286 ---NATFFSISAASLT--SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHS 360 (502)
Q Consensus 286 ---~~~fv~i~~s~l~--~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 360 (502)
+..++.++.+.+. ..|.|+.+..+..++..+....++||||||||.+.+.+...... ....+.+...+.
T Consensus 239 ~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~--~d~~nlLkp~L~---- 312 (758)
T PRK11034 239 VMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VDAANLIKPLLS---- 312 (758)
T ss_pred hhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcH--HHHHHHHHHHHh----
Confidence 3455566655554 35678888888999998887788999999999998765421111 112222222221
Q ss_pred CCCCcEEEEEEcCCCC-----CCcHHHHccccceeeecCCCHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHhcCC--
Q psy2637 361 NSEHRLLVMGATNRPQ-----ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK----HGNPLSQLELDAVAKLTEG-- 429 (502)
Q Consensus 361 ~~~~~v~vIaaTN~~~-----~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~----~~~~l~~~~l~~la~~t~g-- 429 (502)
...+.+|++|+.++ ..|+++.|||+ .|.++.|+.+++.+|++.+... +++.+++..+...+..+..
T Consensus 313 --~g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 313 --SGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred --CCCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccc
Confidence 24589999999864 57999999996 8999999999999999976644 5667888888777765543
Q ss_pred ---CCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhh
Q psy2637 430 ---YSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRI 478 (502)
Q Consensus 430 ---~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~ 478 (502)
+-|...-.++.+|+... + +.... .....|+.+|+...+...
T Consensus 390 ~~r~lPdKaidlldea~a~~-~-~~~~~------~~~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 390 NDRHLPDKAIDVIDEAGARA-R-LMPVS------KRKKTVNVADIESVVARI 433 (758)
T ss_pred cCccChHHHHHHHHHHHHhh-c-cCccc------ccccccChhhHHHHHHHH
Confidence 34445556666665321 1 10000 012346777777666543
No 101
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=3e-15 Score=160.23 Aligned_cols=186 Identities=23% Similarity=0.312 Sum_probs=136.6
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC--c---------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA--T--------- 288 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~--~--------- 288 (502)
..+.|.+|++++|++.+++.|..++... ..+..+||+||||||||++|+++|+.+.. +
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 4578899999999999999999988432 22355699999999999999999998742 1
Q ss_pred ------------eEEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHH
Q psy2637 289 ------------FFSISAASLTSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFL 352 (502)
Q Consensus 289 ------------fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll 352 (502)
++.++.+. ......++.+.+.+.. ..+.+|+|||+|.+. ...++.|+
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLL 137 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALL 137 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHH
Confidence 33333321 1112223444333322 245799999998772 22344566
Q ss_pred HHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCH
Q psy2637 353 LEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSG 432 (502)
Q Consensus 353 ~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~ 432 (502)
..++. ++..+++|.+|+.+..+.+.+.+|+. .+.|..|+.++....+...+.+.+..+++..+..++..+.|..+
T Consensus 138 k~LEe----p~~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR 212 (504)
T PRK14963 138 KTLEE----PPEHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMR 212 (504)
T ss_pred HHHHh----CCCCEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 66553 23457777788888999999999996 89999999999999999999999998999999999999988655
Q ss_pred HHHHHH
Q psy2637 433 SDLTNL 438 (502)
Q Consensus 433 ~dL~~L 438 (502)
..+..|
T Consensus 213 ~aln~L 218 (504)
T PRK14963 213 DAESLL 218 (504)
T ss_pred HHHHHH
Confidence 444433
No 102
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.67 E-value=1.8e-17 Score=175.26 Aligned_cols=215 Identities=21% Similarity=0.270 Sum_probs=155.0
Q ss_pred ChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc--cCceEEeeccchhhhhh-------
Q psy2637 232 GQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC--NATFFSISAASLTSKYV------- 302 (502)
Q Consensus 232 G~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~--~~~fv~i~~s~l~~~~~------- 302 (502)
+.+...+.+...+ .++.....++|+.|+|||||..+|+++|+.+ ..||+.+||+.++....
T Consensus 317 ~~d~s~a~l~rk~----------~rv~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy 386 (606)
T COG3284 317 LLDPSRATLLRKA----------ERVAATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGY 386 (606)
T ss_pred ccCHHHHHHHHHH----------HHHhhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhcc
Confidence 5555555555444 4445567899999999999999999999988 58999999999875422
Q ss_pred ------hhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc-------cCCCCCCCcEEEE
Q psy2637 303 ------GQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD-------GLHSNSEHRLLVM 369 (502)
Q Consensus 303 ------g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~-------g~~~~~~~~v~vI 369 (502)
|...+-..+.++.+.+ +++|||||..|. ..++..||+.+. |... .+.+|+||
T Consensus 387 ~~GafTga~~kG~~g~~~~A~g---GtlFldeIgd~p-----------~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi 451 (606)
T COG3284 387 VAGAFTGARRKGYKGKLEQADG---GTLFLDEIGDMP-----------LALQSRLLRVLQEGVVTPLGGTR-IKVDIRVI 451 (606)
T ss_pred CccccccchhccccccceecCC---CccHHHHhhhch-----------HHHHHHHHHHHhhCceeccCCcc-eeEEEEEE
Confidence 2222333445555555 899999998772 334444555443 4444 56789999
Q ss_pred EEcCCC--CCCcHHHHc-----cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2637 370 GATNRP--QELDEAVLR-----RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDA 442 (502)
Q Consensus 370 aaTN~~--~~l~~~l~r-----Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a 442 (502)
+||+++ ..+..+.|| |++ .+.|.+|++++|.+.+..+...+... ...--.++++.+..|..+.
T Consensus 452 ~ath~dl~~lv~~g~fredLyyrL~-~~~i~lP~lr~R~d~~~~l~~~~~~~---------~~~~~~l~~~~~~~l~~~~ 521 (606)
T COG3284 452 AATHRDLAQLVEQGRFREDLYYRLN-AFVITLPPLRERSDRIPLLDRILKRE---------NDWRLQLDDDALARLLAYR 521 (606)
T ss_pred eccCcCHHHHHHcCCchHHHHHHhc-CeeeccCchhcccccHHHHHHHHHHc---------cCCCccCCHHHHHHHHhCC
Confidence 999986 333344344 886 89999999999998765544321111 0011237888999999999
Q ss_pred HhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhcCC
Q psy2637 443 ALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIRRS 481 (502)
Q Consensus 443 ~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~~s 481 (502)
||+|+||+.|.++....+++...|...|++..+.....+
T Consensus 522 WPGNirel~~v~~~~~~l~~~g~~~~~dlp~~l~~~~~~ 560 (606)
T COG3284 522 WPGNIRELDNVIERLAALSDGGRIRVSDLPPELLEEQAT 560 (606)
T ss_pred CCCcHHHHHHHHHHHHHcCCCCeeEcccCCHHHHhhhcc
Confidence 999999999999999999999999999999888764443
No 103
>KOG2028|consensus
Probab=99.67 E-value=1.7e-15 Score=149.69 Aligned_cols=212 Identities=25% Similarity=0.359 Sum_probs=147.9
Q ss_pred CCCCCcccccChHHHHHH---HHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc---eEEeecc
Q psy2637 222 GSPVQWQDIAGQEVAKQA---LHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT---FFSISAA 295 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~---l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~---fv~i~~s 295 (502)
..|.+++|.+||+...-+ |+.++.. ..-.+++|+||||||||+||+.|+.....+ |+.++..
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQ------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHc------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 456678888888765433 3333321 123679999999999999999999988655 7766653
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhc-----CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEE
Q psy2637 296 SLTSKYVGQGEKLVRALFAMAREL-----QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMG 370 (502)
Q Consensus 296 ~l~~~~~g~~~~~~~~lf~~a~~~-----~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIa 370 (502)
. .....++++|+.+... ...|||||||+.+-. ..+..|+-..+ ...|.+|+
T Consensus 200 ~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk-----------sQQD~fLP~VE------~G~I~lIG 255 (554)
T KOG2028|consen 200 N-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK-----------SQQDTFLPHVE------NGDITLIG 255 (554)
T ss_pred c-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh-----------hhhhcccceec------cCceEEEe
Confidence 2 2233467788877642 447999999987721 12233443332 34588888
Q ss_pred Ec--CCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhc----------CC---CCCHHHHHHHHHhcCCCCHHHH
Q psy2637 371 AT--NRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKH----------GN---PLSQLELDAVAKLTEGYSGSDL 435 (502)
Q Consensus 371 aT--N~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~----------~~---~l~~~~l~~la~~t~g~s~~dL 435 (502)
|| |+.-.++.++++|+. ++.+...+.++...|+.+-+.-. .. .+++..++.++..++|.....|
T Consensus 256 ATTENPSFqln~aLlSRC~-VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL 334 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLSRCR-VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL 334 (554)
T ss_pred cccCCCccchhHHHHhccc-eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH
Confidence 87 344689999999994 99999999999999998755421 11 2456678999999999999999
Q ss_pred HHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhc
Q psy2637 436 TNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIR 479 (502)
Q Consensus 436 ~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~ 479 (502)
+.|.-.+.+...|+-.. ....|+.+|+.+.+..-.
T Consensus 335 N~Lems~~m~~tr~g~~---------~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 335 NALEMSLSMFCTRSGQS---------SRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred HHHHHHHHHHHhhcCCc---------ccceecHHHHHHHHhhcc
Confidence 88877666666665421 235688899988887543
No 104
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=6.7e-15 Score=157.96 Aligned_cols=188 Identities=21% Similarity=0.245 Sum_probs=135.0
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC------------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA------------ 287 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~------------ 287 (502)
..+.|.+|++++|++.+++.+...+... ..+..+||+||+|+|||++|+.+|+.++.
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 3467889999999999999999888432 22456899999999999999999997753
Q ss_pred ------------ceEEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHH
Q psy2637 288 ------------TFFSISAASLTSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEF 351 (502)
Q Consensus 288 ------------~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~l 351 (502)
.++.++.+.- . ....++.+.+.+.. ....|++|||+|.+.. ..++.|
T Consensus 77 ~sC~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naL 139 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNAL 139 (546)
T ss_pred HHHHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHH
Confidence 1222222110 0 11122344433322 2346999999998832 244566
Q ss_pred HHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCC
Q psy2637 352 LLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYS 431 (502)
Q Consensus 352 l~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s 431 (502)
+..++. ++..+.+|.+|+.+..+.+.+++|+. .++|..++.++....+...+.+.+..+++..+..++..+.|..
T Consensus 140 LK~LEe----pp~~v~fIL~Ttd~~kil~tI~SRc~-~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~Gdl 214 (546)
T PRK14957 140 LKTLEE----PPEYVKFILATTDYHKIPVTILSRCI-QLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSL 214 (546)
T ss_pred HHHHhc----CCCCceEEEEECChhhhhhhHHHhee-eEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 666653 34457777777778888888999995 9999999999999999999998888899999999999998755
Q ss_pred HHHHHHHHHH
Q psy2637 432 GSDLTNLAKD 441 (502)
Q Consensus 432 ~~dL~~L~~~ 441 (502)
+..+ +++..
T Consensus 215 R~al-nlLek 223 (546)
T PRK14957 215 RDAL-SLLDQ 223 (546)
T ss_pred HHHH-HHHHH
Confidence 4444 44443
No 105
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.65 E-value=4.3e-15 Score=155.13 Aligned_cols=223 Identities=24% Similarity=0.342 Sum_probs=148.6
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhh----hcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh-hhhh
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELF----TGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS-KYVG 303 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~----~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~-~~~g 303 (502)
.++||+.+++.+..++.....+-... .....+..++||+||||||||++|+++|+.++.||+.++++.+.. .|.|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 38999999999977764321111000 022235678999999999999999999999999999999988764 5666
Q ss_pred hh-HHHHHHHHHHH----HhcCCeEEEEcCCcchhcccccC---hhHHHHHHHHHHHHHhccCC---------CCCCCcE
Q psy2637 304 QG-EKLVRALFAMA----RELQPSIIFIDEVDSVLSERKEG---EHEASRRLKTEFLLEFDGLH---------SNSEHRL 366 (502)
Q Consensus 304 ~~-~~~~~~lf~~a----~~~~p~iLfLDEId~L~~~~~~~---~~~~~~~~~~~ll~~l~g~~---------~~~~~~v 366 (502)
.. +..+..++..+ ....++||||||||.+....... .......+++.|+..|+|.. ..+..+.
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 53 33334443321 23466899999999997652211 11122357778888887531 1112345
Q ss_pred EEEEEcCCCC----------------------------------------------------CCcHHHHccccceeeecC
Q psy2637 367 LVMGATNRPQ----------------------------------------------------ELDEAVLRRFSKRIYVTL 394 (502)
Q Consensus 367 ~vIaaTN~~~----------------------------------------------------~l~~~l~rRf~~~I~i~~ 394 (502)
++|.|+|... .+.|++..|++.++.|.+
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~ 311 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEE 311 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCC
Confidence 6666655400 035667779998999999
Q ss_pred CCHHHHHHHHHH----HHh-------hcC--CCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhhHHhhh
Q psy2637 395 PDSKTRKSLLEK----LLN-------KHG--NPLSQLELDAVAKLT--EGYSGSDLTNLAKDAALGPIRELN 451 (502)
Q Consensus 395 P~~~er~~il~~----~l~-------~~~--~~l~~~~l~~la~~t--~g~s~~dL~~L~~~a~~~airel~ 451 (502)
++.++..+|+.. +++ ..+ ..+++..++.|++.. .++-.+.|+.+++......+.++.
T Consensus 312 L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p 383 (412)
T PRK05342 312 LDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELP 383 (412)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcc
Confidence 999999999872 332 222 236788888888763 356678888888887777776653
No 106
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.65 E-value=9.3e-15 Score=162.72 Aligned_cols=205 Identities=17% Similarity=0.247 Sum_probs=141.5
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCC---CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh-----
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLR---TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS----- 299 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~---~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~----- 299 (502)
..++||+.+++.|.+.+.... .++. .|..++||+||||||||++|+++|+.++.+|+.++|+++..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~ 531 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSR------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVS 531 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHh------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHH
Confidence 358999999999999885321 1222 33457999999999999999999999999999999988753
Q ss_pred hhhhhhH-----HHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC-CCC------CCCcEE
Q psy2637 300 KYVGQGE-----KLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL-HSN------SEHRLL 367 (502)
Q Consensus 300 ~~~g~~~-----~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~-~~~------~~~~v~ 367 (502)
.+.|... .....+.+..+....+||||||||.+.+ .+++.|+..++.. ... .-.+++
T Consensus 532 ~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~-----------~v~~~LLq~ld~G~ltd~~g~~vd~rn~i 600 (758)
T PRK11034 532 RLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNLLLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_pred HHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH-----------HHHHHHHHHHhcCeeecCCCceecCCCcE
Confidence 2222110 0111233444555668999999998843 3666777777632 111 113577
Q ss_pred EEEEcCCC-------------------------CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhh---------cCC
Q psy2637 368 VMGATNRP-------------------------QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK---------HGN 413 (502)
Q Consensus 368 vIaaTN~~-------------------------~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~---------~~~ 413 (502)
||+|||.. ..+.|+++.|++.+|.|++++.++..+|+...+.+ ...
T Consensus 601 iI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l 680 (758)
T PRK11034 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSL 680 (758)
T ss_pred EEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCc
Confidence 99999932 12568888999999999999999999999877653 223
Q ss_pred CCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhhHHh
Q psy2637 414 PLSQLELDAVAKLTE--GYSGSDLTNLAKDAALGPIRE 449 (502)
Q Consensus 414 ~l~~~~l~~la~~t~--g~s~~dL~~L~~~a~~~aire 449 (502)
.+++..++.|+...- .+-.+.|+.+++......+.+
T Consensus 681 ~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 681 EVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred eECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 356777787876442 344577777777666555543
No 107
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=6.3e-15 Score=159.00 Aligned_cols=196 Identities=22% Similarity=0.242 Sum_probs=138.4
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceE--Eeeccch
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFF--SISAASL 297 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv--~i~~s~l 297 (502)
.++.|.+|++++|++.+++.+..++... ..+..+||+||+|+|||++|+.+|+.++.... .-.|...
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 3467889999999999999999988432 22456799999999999999999998854210 0011110
Q ss_pred ------hhh----------hhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc
Q psy2637 298 ------TSK----------YVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG 357 (502)
Q Consensus 298 ------~~~----------~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g 357 (502)
... -.......++.+.+.+.. ....|++|||+|.|.. ..++.|+..++.
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naLLK~LEe 145 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAMLKTLEE 145 (527)
T ss_pred HHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHHHHHHhC
Confidence 000 001112234555555432 2346999999998832 234556666653
Q ss_pred CCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHH
Q psy2637 358 LHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTN 437 (502)
Q Consensus 358 ~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~ 437 (502)
++..+.+|.+|+.++.+.+.+++|+. .+.|..++.++....+...+.+.+..+++..+..++..+.|..+ +..+
T Consensus 146 ----pp~~~~fIL~t~d~~kil~tI~SRc~-~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr-~al~ 219 (527)
T PRK14969 146 ----PPEHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMR-DALS 219 (527)
T ss_pred ----CCCCEEEEEEeCChhhCchhHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHH
Confidence 34567888888888888888999994 89999999999999999999888888899999999999887544 4444
Q ss_pred HHHHHH
Q psy2637 438 LAKDAA 443 (502)
Q Consensus 438 L~~~a~ 443 (502)
++..+.
T Consensus 220 lldqai 225 (527)
T PRK14969 220 LLDQAI 225 (527)
T ss_pred HHHHHH
Confidence 555444
No 108
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.5e-14 Score=154.87 Aligned_cols=188 Identities=21% Similarity=0.258 Sum_probs=136.1
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc------------
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT------------ 288 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~------------ 288 (502)
.+.|.+|++++|++.+++.|..++... ..+..+||+||+|||||++|+++|+.+++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~~-----------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDAG-----------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 478889999999999999999998432 224457999999999999999999987531
Q ss_pred --------------eEEeeccchhhhhhhhhHHHHHHHHHHHH----hcCCeEEEEcCCcchhcccccChhHHHHHHHHH
Q psy2637 289 --------------FFSISAASLTSKYVGQGEKLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTE 350 (502)
Q Consensus 289 --------------fv~i~~s~l~~~~~g~~~~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ 350 (502)
++.++.+... .-..++.+.+.+. .....|++|||+|.|.. ..++.
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~NA 137 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFNA 137 (584)
T ss_pred HHHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHHH
Confidence 2222221100 1122233333332 22346999999998832 24556
Q ss_pred HHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCC
Q psy2637 351 FLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGY 430 (502)
Q Consensus 351 ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~ 430 (502)
|+..++. ++..+++|.+|+.++.+.+.+++|+. .+.|..++.++..+.+...+...+..+++..+..++..+.|-
T Consensus 138 LLK~LEE----pp~~~~fIL~tte~~kll~TI~SRc~-~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~Gd 212 (584)
T PRK14952 138 LLKIVEE----PPEHLIFIFATTEPEKVLPTIRSRTH-HYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGS 212 (584)
T ss_pred HHHHHhc----CCCCeEEEEEeCChHhhHHHHHHhce-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 6666653 44568888888888999999999985 899999999999999999999989889999999998888774
Q ss_pred CHHHHHHHHHHH
Q psy2637 431 SGSDLTNLAKDA 442 (502)
Q Consensus 431 s~~dL~~L~~~a 442 (502)
.+ ++.+++...
T Consensus 213 lR-~aln~Ldql 223 (584)
T PRK14952 213 PR-DTLSVLDQL 223 (584)
T ss_pred HH-HHHHHHHHH
Confidence 44 444444433
No 109
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.65 E-value=1.2e-14 Score=154.87 Aligned_cols=198 Identities=22% Similarity=0.362 Sum_probs=130.0
Q ss_pred CCCCCccccc-Ch--HHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-----cCceEEee
Q psy2637 222 GSPVQWQDIA-GQ--EVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-----NATFFSIS 293 (502)
Q Consensus 222 ~~~~~~~~ii-G~--~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~i~ 293 (502)
.+..+|++++ |. ..+...+..+...+ +....+++|+||||+|||+|++++++++ +..++.++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc----------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3555788854 43 33455555554221 1234679999999999999999999987 45578889
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcC
Q psy2637 294 AASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATN 373 (502)
Q Consensus 294 ~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN 373 (502)
+.++...+..........-|.... ..+.+|+|||++.+.+.. ..+.+++..++...... ..+||++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~l~~~~--~~iiits~~ 253 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGKE---------RTQEEFFHTFNALHEAG--KQIVLTSDR 253 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCCH---------HHHHHHHHHHHHHHHCC--CcEEEECCC
Confidence 888776655443221112222222 246799999999884431 12223444333332222 235555555
Q ss_pred CCCC---CcHHHHcccc--ceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2637 374 RPQE---LDEAVLRRFS--KRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDA 442 (502)
Q Consensus 374 ~~~~---l~~~l~rRf~--~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a 442 (502)
.|.. +++.+.+||. .++.+.+|+.++|.++++..+...+..++++.++.++....| +.+.|..++...
T Consensus 254 ~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l 326 (450)
T PRK00149 254 PPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRL 326 (450)
T ss_pred CHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHH
Confidence 5543 6788999995 378999999999999999999988888999999999999886 444554444433
No 110
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=9.2e-15 Score=158.75 Aligned_cols=188 Identities=24% Similarity=0.325 Sum_probs=138.9
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc------------
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT------------ 288 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~------------ 288 (502)
.+.|.+|++++|++.+.+.+..++... ..+..+||+||+|||||++|+.+|+.++++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 468889999999999999999988432 234668999999999999999999987421
Q ss_pred ------------eEEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHH
Q psy2637 289 ------------FFSISAASLTSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFL 352 (502)
Q Consensus 289 ------------fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll 352 (502)
++.++.+. +.....++.+.+.+.. ....|++|||+|.|.. ...+.|+
T Consensus 78 ~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naLL 140 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNALL 140 (559)
T ss_pred HHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHH
Confidence 22232211 1122334555555442 2346999999998832 2344566
Q ss_pred HHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCH
Q psy2637 353 LEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSG 432 (502)
Q Consensus 353 ~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~ 432 (502)
..++ .++..+++|.+|+.++.+.+.+++|+. .+.|..|+.++....+...+.+.+..+++..+..++..+.|-..
T Consensus 141 KtLE----epp~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 141 KTLE----EPPAHVIFILATTEPHKIPATILSRCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMR 215 (559)
T ss_pred HHhc----CCCCCeEEEEEeCChhhCcHHHHhHhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 6665 334567888788888999999999996 89999999999999999999999999999999999999987444
Q ss_pred HHHHHHHHHH
Q psy2637 433 SDLTNLAKDA 442 (502)
Q Consensus 433 ~dL~~L~~~a 442 (502)
+...++..+
T Consensus 216 -~al~~Ldq~ 224 (559)
T PRK05563 216 -DALSILDQA 224 (559)
T ss_pred -HHHHHHHHH
Confidence 444444433
No 111
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=2.5e-14 Score=156.71 Aligned_cols=192 Identities=23% Similarity=0.287 Sum_probs=139.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceE---Eeeccc
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFF---SISAAS 296 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv---~i~~s~ 296 (502)
..++|.+|++++|++.+++.+..++... ..+..+||+||+|+|||++|+++|+.+.++-. .-.|..
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 4578899999999999999999988432 23466899999999999999999998754211 011211
Q ss_pred hhh------hhh---h---hhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCC
Q psy2637 297 LTS------KYV---G---QGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHS 360 (502)
Q Consensus 297 l~~------~~~---g---~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 360 (502)
... .+. + .....++.+.+.+.. ....|++|||+|.|.. ..++.|+..++.
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEE--- 144 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEE--- 144 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhc---
Confidence 110 000 0 112334556555543 2346999999998832 234556666653
Q ss_pred CCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHH
Q psy2637 361 NSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNL 438 (502)
Q Consensus 361 ~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L 438 (502)
++..+++|.+|+.++.+.+.+++|+. ++.|.+|+.++....+...+.+.+..+++..+..++..+.|-.+..+..+
T Consensus 145 -PP~~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 145 -PPKHVIFILATTEVHKIPLTILSRVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred -CCCceEEEEEcCChhhhhHHHHhhce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44567888888888999999999996 89999999999999999999988888888889999999987555444433
No 112
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.64 E-value=2.1e-14 Score=151.08 Aligned_cols=197 Identities=23% Similarity=0.369 Sum_probs=127.8
Q ss_pred CCCCccc-ccChHH--HHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-----cCceEEeec
Q psy2637 223 SPVQWQD-IAGQEV--AKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-----NATFFSISA 294 (502)
Q Consensus 223 ~~~~~~~-iiG~~~--~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~i~~ 294 (502)
+..+|++ ++|.+. +...+..+...+ +....+++|+||+|+|||+|++++++++ +..++.+++
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHHHhCc----------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 4557888 445432 344444443211 2234679999999999999999999987 467888988
Q ss_pred cchhhhhhhhhHH-HHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcC
Q psy2637 295 ASLTSKYVGQGEK-LVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATN 373 (502)
Q Consensus 295 s~l~~~~~g~~~~-~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN 373 (502)
.++...+...... ......+... .+.+|+|||++.+.+.. ..+.+++..++...... ..+||+++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~~~~~~--~~iiits~~ 241 (405)
T TIGR00362 175 EKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE---------RTQEEFFHTFNALHENG--KQIVLTSDR 241 (405)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH---------HHHHHHHHHHHHHHHCC--CCEEEecCC
Confidence 8776554433221 1112222222 35799999999885431 11223333333322221 234554444
Q ss_pred CCC---CCcHHHHccccc--eeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy2637 374 RPQ---ELDEAVLRRFSK--RIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAA 443 (502)
Q Consensus 374 ~~~---~l~~~l~rRf~~--~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~ 443 (502)
.|. .+++.+.+||.. .+.+++|+.++|..|++..+...+..++++.++.++....+ +.++|..++....
T Consensus 242 ~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~ 315 (405)
T TIGR00362 242 PPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLL 315 (405)
T ss_pred CHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 454 466888899964 69999999999999999999999999999999999988875 4555555554443
No 113
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=1.5e-14 Score=155.53 Aligned_cols=186 Identities=22% Similarity=0.316 Sum_probs=136.2
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC------------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA------------ 287 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~------------ 287 (502)
..++|.+|++++|++.+++.+..++... ..+.++||+||+|+|||++|+++|+.+.+
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~~-----------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILNN-----------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 4578889999999999999999887322 22467999999999999999999998742
Q ss_pred ------------ceEEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHH
Q psy2637 288 ------------TFFSISAASLTSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEF 351 (502)
Q Consensus 288 ------------~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~l 351 (502)
.++.++++.. ..-..++.+.+.+.. ....|++|||+|.|... ..+.|
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~-----------A~NaL 139 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS-----------AWNAL 139 (605)
T ss_pred HHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-----------HHHHH
Confidence 1222222110 111223444443332 23469999999988321 23456
Q ss_pred HHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCC
Q psy2637 352 LLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYS 431 (502)
Q Consensus 352 l~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s 431 (502)
+..++. ++..+++|.+|+.+..+.+.+++|+. .+.|..|+.++....+...+.+.+..+++..+..++..+.|..
T Consensus 140 LKtLEE----Pp~~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gdl 214 (605)
T PRK05896 140 LKTLEE----PPKHVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSL 214 (605)
T ss_pred HHHHHh----CCCcEEEEEECCChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcH
Confidence 666653 34567888888888999999999996 8999999999999999999998888899999999999998855
Q ss_pred HHHHHHH
Q psy2637 432 GSDLTNL 438 (502)
Q Consensus 432 ~~dL~~L 438 (502)
+..+..+
T Consensus 215 R~AlnlL 221 (605)
T PRK05896 215 RDGLSIL 221 (605)
T ss_pred HHHHHHH
Confidence 5444433
No 114
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.64 E-value=4e-15 Score=168.87 Aligned_cols=194 Identities=20% Similarity=0.320 Sum_probs=142.8
Q ss_pred HHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-------
Q psy2637 213 VVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC------- 285 (502)
Q Consensus 213 ~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~------- 285 (502)
++...+.+...+..++.++|++...+.+.+.+... ...+++|+||||||||++|+.+|..+
T Consensus 163 ~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~ 230 (857)
T PRK10865 163 KYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPE 230 (857)
T ss_pred HHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcC------------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCch
Confidence 34444444556668899999999877777766322 24689999999999999999999987
Q ss_pred ---cCceEEeeccchh--hhhhhhhHHHHHHHHHHHHh-cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCC
Q psy2637 286 ---NATFFSISAASLT--SKYVGQGEKLVRALFAMARE-LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLH 359 (502)
Q Consensus 286 ---~~~fv~i~~s~l~--~~~~g~~~~~~~~lf~~a~~-~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~ 359 (502)
+.+++.++.+.+. .++.|..+..++.+|+.+.. ..++||||||+|.+.+.+..... ....+.|...+
T Consensus 231 ~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~---~d~~~~lkp~l---- 303 (857)
T PRK10865 231 GLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPAL---- 303 (857)
T ss_pred hhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc---hhHHHHhcchh----
Confidence 5788888888765 45778888889999987644 46789999999999766432211 11222222222
Q ss_pred CCCCCcEEEEEEcCCCC-----CCcHHHHccccceeeecCCCHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHhcC
Q psy2637 360 SNSEHRLLVMGATNRPQ-----ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK----HGNPLSQLELDAVAKLTE 428 (502)
Q Consensus 360 ~~~~~~v~vIaaTN~~~-----~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~----~~~~l~~~~l~~la~~t~ 428 (502)
..+.+.+||||+..+ .+++++.|||+ .|.+..|+.+++..+++.+..+ +++.+++..+...+..+.
T Consensus 304 --~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ 378 (857)
T PRK10865 304 --ARGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSH 378 (857)
T ss_pred --hcCCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhh
Confidence 124689999999875 58999999997 7899999999999999887754 345667777666555554
No 115
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.64 E-value=3.1e-14 Score=159.71 Aligned_cols=228 Identities=17% Similarity=0.221 Sum_probs=150.0
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh---------
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS--------- 299 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~--------- 299 (502)
++.|++.+|+++.+++....... ...+..++|+||||+|||++++.+|+.++.+|+.++++....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 58999999999998875332110 123457999999999999999999999999999998776532
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC---------C--CCCCCcEEE
Q psy2637 300 KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL---------H--SNSEHRLLV 368 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~---------~--~~~~~~v~v 368 (502)
.|.|.....+...+..+....| |++|||+|.+.+....+... .|+..++.. . ...-+++++
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~~~~-------aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGDPAS-------ALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCCHHH-------HHHHHhccccEEEEecccccccccCCceEE
Confidence 3445544444444444443444 89999999997653322222 333333310 0 011256899
Q ss_pred EEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhh-----c-----CCCCCHHHHHHHHHhc-CCCCHHHHHH
Q psy2637 369 MGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK-----H-----GNPLSQLELDAVAKLT-EGYSGSDLTN 437 (502)
Q Consensus 369 IaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~-----~-----~~~l~~~~l~~la~~t-~g~s~~dL~~ 437 (502)
|+|+|.. .+++++++||. +|.+..++.++..+|++.++.. . ...+++..+..++... ..+-.+.|+.
T Consensus 469 i~TaN~~-~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR 546 (784)
T PRK10787 469 VATSNSM-NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLER 546 (784)
T ss_pred EEcCCCC-CCCHHHhccee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHH
Confidence 9999987 59999999996 8999999999999999888741 1 2335677777777532 2333466666
Q ss_pred HHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHh
Q psy2637 438 LAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKR 477 (502)
Q Consensus 438 L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~ 477 (502)
.+...+...+.+.-.. .......|+.+++.+.+..
T Consensus 547 ~I~~i~r~~l~~~~~~-----~~~~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 547 EISKLCRKAVKQLLLD-----KSLKHIEINGDNLHDYLGV 581 (784)
T ss_pred HHHHHHHHHHHHHHhc-----CCCceeeecHHHHHHHhCC
Confidence 6666554444332100 0011246888888877753
No 116
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=2.4e-14 Score=156.14 Aligned_cols=184 Identities=24% Similarity=0.303 Sum_probs=137.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc-----------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT----------- 288 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~----------- 288 (502)
..+.|.+|++|+|++.+++.|..++... ..+..+||+||+|+|||++|+.+++.++..
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 3578889999999999999999988432 234667999999999999999999987532
Q ss_pred -------------eEEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHH
Q psy2637 289 -------------FFSISAASLTSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEF 351 (502)
Q Consensus 289 -------------fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~l 351 (502)
++.++... ...-..++.+.+.+.. ....|++|||+|.|.. ..++.|
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naL 139 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNAL 139 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHH
Confidence 22222211 0112234455544432 2336999999998832 234566
Q ss_pred HHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCC
Q psy2637 352 LLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYS 431 (502)
Q Consensus 352 l~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s 431 (502)
+..++. ++..+++|.+|+.++.|.+.+++|+. .+.|..++.++....+...+.+.+..+++..+..++..+.|-.
T Consensus 140 Lk~LEe----pp~~~~fIl~t~~~~kl~~tI~SRc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~l 214 (576)
T PRK14965 140 LKTLEE----PPPHVKFIFATTEPHKVPITILSRCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSM 214 (576)
T ss_pred HHHHHc----CCCCeEEEEEeCChhhhhHHHHHhhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH
Confidence 666653 44568888888888999999999995 8999999999999999999999999999999999999999855
Q ss_pred HHHHH
Q psy2637 432 GSDLT 436 (502)
Q Consensus 432 ~~dL~ 436 (502)
+..+.
T Consensus 215 r~al~ 219 (576)
T PRK14965 215 RDSLS 219 (576)
T ss_pred HHHHH
Confidence 44433
No 117
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.63 E-value=1.7e-14 Score=148.94 Aligned_cols=189 Identities=24% Similarity=0.341 Sum_probs=136.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc-----------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT----------- 288 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~----------- 288 (502)
+.++|..|++++|++.+++.+.+.+... ..+..+||+||||+|||++|+++++.+..+
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~~-----------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKNG-----------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 4567889999999999999999887322 234678999999999999999999987422
Q ss_pred -------------eEEeeccchhhhhhhhhHHHHHHHHHHHHhc----CCeEEEEcCCcchhcccccChhHHHHHHHHHH
Q psy2637 289 -------------FFSISAASLTSKYVGQGEKLVRALFAMAREL----QPSIIFIDEVDSVLSERKEGEHEASRRLKTEF 351 (502)
Q Consensus 289 -------------fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~l 351 (502)
++.++... ......++.+++.+... ...+|+|||+|.+.. ...+.+
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~L 137 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNAL 137 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHH
Confidence 22222210 01122345565555432 335999999998732 234456
Q ss_pred HHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCC
Q psy2637 352 LLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYS 431 (502)
Q Consensus 352 l~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s 431 (502)
+..++. ++..+++|.+|+.++.+.+.+.+|+. .+.+++|+.++..+++...+.+.+..+++..+..++..+.|..
T Consensus 138 l~~le~----~~~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~ 212 (355)
T TIGR02397 138 LKTLEE----PPEHVVFILATTEPHKIPATILSRCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSL 212 (355)
T ss_pred HHHHhC----CccceeEEEEeCCHHHHHHHHHhhee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCh
Confidence 665543 33457777788888888889999995 8999999999999999999999988899999999999988744
Q ss_pred HHHHHHHHHHH
Q psy2637 432 GSDLTNLAKDA 442 (502)
Q Consensus 432 ~~dL~~L~~~a 442 (502)
+ .+.+.++.+
T Consensus 213 ~-~a~~~lekl 222 (355)
T TIGR02397 213 R-DALSLLDQL 222 (355)
T ss_pred H-HHHHHHHHH
Confidence 4 444444433
No 118
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.63 E-value=4.7e-15 Score=168.38 Aligned_cols=199 Identities=23% Similarity=0.331 Sum_probs=150.2
Q ss_pred HHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc------
Q psy2637 212 QVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC------ 285 (502)
Q Consensus 212 ~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~------ 285 (502)
+.+...+........++.++|.+..++.+.+.+... ...+++|+||||||||++|+.+|...
T Consensus 163 ~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp 230 (821)
T CHL00095 163 EEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRR------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVP 230 (821)
T ss_pred HHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHccc------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCC
Confidence 334444444444557889999999999999887332 34689999999999999999999986
Q ss_pred ----cCceEEeeccchh--hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCC
Q psy2637 286 ----NATFFSISAASLT--SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLH 359 (502)
Q Consensus 286 ----~~~fv~i~~s~l~--~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~ 359 (502)
+.+++.++++.+. .+|.|+.+..+..+++.+....++||||||||.+.+........ ...+.|...+.
T Consensus 231 ~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~---~~a~lLkp~l~--- 304 (821)
T CHL00095 231 DILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI---DAANILKPALA--- 304 (821)
T ss_pred hhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc---cHHHHhHHHHh---
Confidence 3678999988776 46788899999999999987788999999999998764322111 12222222222
Q ss_pred CCCCCcEEEEEEcCCCC-----CCcHHHHccccceeeecCCCHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHhcCCC
Q psy2637 360 SNSEHRLLVMGATNRPQ-----ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK----HGNPLSQLELDAVAKLTEGY 430 (502)
Q Consensus 360 ~~~~~~v~vIaaTN~~~-----~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~----~~~~l~~~~l~~la~~t~g~ 430 (502)
...+.+|++|+..+ ..++++.+||. .|.++.|+.++...|++.+... ++..++++.+..++..+.+|
T Consensus 305 ---rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~y 380 (821)
T CHL00095 305 ---RGELQCIGATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQY 380 (821)
T ss_pred ---CCCcEEEEeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Confidence 24589999998753 57899999996 7899999999999998866543 45557888888888888766
Q ss_pred CH
Q psy2637 431 SG 432 (502)
Q Consensus 431 s~ 432 (502)
.+
T Consensus 381 i~ 382 (821)
T CHL00095 381 IA 382 (821)
T ss_pred Cc
Confidence 43
No 119
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=3.9e-14 Score=158.89 Aligned_cols=189 Identities=24% Similarity=0.261 Sum_probs=136.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc-----------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT----------- 288 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~----------- 288 (502)
.++.+.+|++|+|++.+++.|..++... ..+..+||+||+|||||++|+.||+.+++.
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 4578899999999999999999988432 223558999999999999999999988531
Q ss_pred ---------------eEEeeccchhhhhhhhhHHHHHHHHHHH----HhcCCeEEEEcCCcchhcccccChhHHHHHHHH
Q psy2637 289 ---------------FFSISAASLTSKYVGQGEKLVRALFAMA----RELQPSIIFIDEVDSVLSERKEGEHEASRRLKT 349 (502)
Q Consensus 289 ---------------fv~i~~s~l~~~~~g~~~~~~~~lf~~a----~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~ 349 (502)
|+.++.... ..-..++.+.+.+ ......|+||||+|.|.. ..++
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~N 138 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFN 138 (824)
T ss_pred HHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHH
Confidence 122222110 0111223332222 223457999999998832 2345
Q ss_pred HHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCC
Q psy2637 350 EFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEG 429 (502)
Q Consensus 350 ~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g 429 (502)
.|+..|+. ....+++|.+|+.++.|.+.+++|+. .+.|..++.++..+++...+.+.+..+++..+..++..+.|
T Consensus 139 aLLK~LEE----pP~~~~fIl~tt~~~kLl~TIrSRc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 139 ALLKIVEE----PPEHLKFIFATTEPDKVIGTIRSRTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHhC----CCCCeEEEEEeCChhhhhHHHHhhee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66666653 34567888888888889999999995 89999999999999999999998988899999999988887
Q ss_pred CCHHHHHHHHHHH
Q psy2637 430 YSGSDLTNLAKDA 442 (502)
Q Consensus 430 ~s~~dL~~L~~~a 442 (502)
+.+++.++++..
T Consensus 214 -dlR~Al~eLEKL 225 (824)
T PRK07764 214 -SVRDSLSVLDQL 225 (824)
T ss_pred -CHHHHHHHHHHH
Confidence 444444444433
No 120
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.63 E-value=2.5e-14 Score=145.24 Aligned_cols=188 Identities=21% Similarity=0.271 Sum_probs=132.9
Q ss_pred hcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc-----CceEEee
Q psy2637 219 LEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN-----ATFFSIS 293 (502)
Q Consensus 219 ~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~i~ 293 (502)
.+.+.|.+|++++|++.+++.+..++... ..++++|+||||||||++++++++.+. ..++.++
T Consensus 8 ~~kyrP~~~~~~~g~~~~~~~l~~~i~~~------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 8 VEKYRPRTLDEIVGQEEIVERLKSYVKEK------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred chhhCCCcHHHhcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 45678899999999999999999988322 124689999999999999999999873 3455555
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHh-----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEE
Q psy2637 294 AASLTSKYVGQGEKLVRALFAMARE-----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLV 368 (502)
Q Consensus 294 ~s~l~~~~~g~~~~~~~~lf~~a~~-----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~v 368 (502)
+++..+. ..... .+.+.+.. ..+.+|+|||+|.+... .+..++..++.. ...+.+
T Consensus 76 ~~~~~~~--~~~~~---~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-----------~~~~L~~~le~~----~~~~~l 135 (319)
T PRK00440 76 ASDERGI--DVIRN---KIKEFARTAPVGGAPFKIIFLDEADNLTSD-----------AQQALRRTMEMY----SQNTRF 135 (319)
T ss_pred cccccch--HHHHH---HHHHHHhcCCCCCCCceEEEEeCcccCCHH-----------HHHHHHHHHhcC----CCCCeE
Confidence 4432210 00111 11112211 23469999999988322 122344444332 223566
Q ss_pred EEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHH
Q psy2637 369 MGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLA 439 (502)
Q Consensus 369 IaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~ 439 (502)
|.++|.+..+.+.+.+|+. ++.+++|+.++...++..++.+.+..+++..++.++..+.|..+..+..+.
T Consensus 136 Il~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~ 205 (319)
T PRK00440 136 ILSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQ 205 (319)
T ss_pred EEEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7778887788888999986 799999999999999999999999989999999999998886665555443
No 121
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=3.9e-14 Score=151.44 Aligned_cols=192 Identities=23% Similarity=0.259 Sum_probs=139.4
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC------------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA------------ 287 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~------------ 287 (502)
+.++|.+|++++|++.+++.+...+... ..+..+||+||+|+|||++|+++++.+..
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 4578899999999999999999988432 23456799999999999999999998732
Q ss_pred ------------ceEEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHH
Q psy2637 288 ------------TFFSISAASLTSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEF 351 (502)
Q Consensus 288 ------------~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~l 351 (502)
.++.++.+.- ..-..++.+.+.... ....|++|||+|.|.. ..++.|
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NAL 137 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNAL 137 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHH
Confidence 1222221110 012334444443321 1236999999998832 234456
Q ss_pred HHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCC
Q psy2637 352 LLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYS 431 (502)
Q Consensus 352 l~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s 431 (502)
+..++. ++..+++|.+|+.+..+.+++++|+. .++|.+++.++....+...+...+..+++..+..++..+.| +
T Consensus 138 LK~LEE----pp~~t~FIL~ttd~~kL~~tI~SRc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEE----PPSYVKFILATTDPLKLPATILSRTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhh----cCCceEEEEEECChhhCchHHHhhce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 666653 34457777788888999999999985 89999999999999999999999999999999999999987 5
Q ss_pred HHHHHHHHHHHHhh
Q psy2637 432 GSDLTNLAKDAALG 445 (502)
Q Consensus 432 ~~dL~~L~~~a~~~ 445 (502)
.+++.+++..+...
T Consensus 212 lR~alnlLdqai~~ 225 (535)
T PRK08451 212 LRDTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555565555543
No 122
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=2.5e-14 Score=155.01 Aligned_cols=194 Identities=19% Similarity=0.203 Sum_probs=137.1
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc-------eEE-e
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT-------FFS-I 292 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~-------fv~-i 292 (502)
.+.|.+|++++|++.+++.+..++... ..+..+||+||+|+|||++|+++|+.++.. .-. -
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESN-----------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 468889999999999999999998432 234669999999999999999999988532 000 0
Q ss_pred eccchhhh-------hhhh---hHHHHHHHHHHHH----hcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC
Q psy2637 293 SAASLTSK-------YVGQ---GEKLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL 358 (502)
Q Consensus 293 ~~s~l~~~-------~~g~---~~~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~ 358 (502)
+|..+... +-|. .-..++.+.+.+. .....+++|||+|.|.. ..++.|+..++
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~naLLK~LE-- 144 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNALLKTIE-- 144 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHHHHHhhc--
Confidence 11111000 0011 1122333433322 23446999999998832 23445666655
Q ss_pred CCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHH
Q psy2637 359 HSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNL 438 (502)
Q Consensus 359 ~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L 438 (502)
.++..+++|.+|+.+..+.+++.+|+. .+.|.+|+.++..+.+...+...+..+++..+..++..+.|. .+++..+
T Consensus 145 --epp~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~Gd-lR~alsl 220 (563)
T PRK06647 145 --EPPPYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGS-VRDAYTL 220 (563)
T ss_pred --cCCCCEEEEEecCChHHhHHHHHHhce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHH
Confidence 345568888888888889999999996 899999999999999999998888889999999999998874 4455555
Q ss_pred HHHH
Q psy2637 439 AKDA 442 (502)
Q Consensus 439 ~~~a 442 (502)
+..+
T Consensus 221 Ldkl 224 (563)
T PRK06647 221 FDQV 224 (563)
T ss_pred HHHH
Confidence 4443
No 123
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.62 E-value=3.5e-14 Score=147.12 Aligned_cols=205 Identities=18% Similarity=0.219 Sum_probs=131.4
Q ss_pred cccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc---------CceEEeeccch
Q psy2637 227 WQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN---------ATFFSISAASL 297 (502)
Q Consensus 227 ~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~---------~~fv~i~~s~l 297 (502)
.++++|.+...+.|...+.... . +..+.+++|+||||||||++++++++.+. ..++.++|...
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~------~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPIL------R--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHH------c--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4579999999999988873211 1 23456899999999999999999998752 46888898664
Q ss_pred hhh----------hh--h--------hhHHHHHHHHHHHHh-cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc
Q psy2637 298 TSK----------YV--G--------QGEKLVRALFAMARE-LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD 356 (502)
Q Consensus 298 ~~~----------~~--g--------~~~~~~~~lf~~a~~-~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~ 356 (502)
.+. .. + ........++..... .++.+|+|||+|.+.... .. ++..++...+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~----~~----~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD----DD----LLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC----cH----HHHhHhcccc
Confidence 321 10 0 011222334444332 346799999999996221 11 2223332211
Q ss_pred cCCCCCCCcEEEEEEcCCCC---CCcHHHHcccc-ceeeecCCCHHHHHHHHHHHHhh--cCCCCCHHHHHHHHH---hc
Q psy2637 357 GLHSNSEHRLLVMGATNRPQ---ELDEAVLRRFS-KRIYVTLPDSKTRKSLLEKLLNK--HGNPLSQLELDAVAK---LT 427 (502)
Q Consensus 357 g~~~~~~~~v~vIaaTN~~~---~l~~~l~rRf~-~~I~i~~P~~~er~~il~~~l~~--~~~~l~~~~l~~la~---~t 427 (502)
.......++.+|+++|.++ .+++.+.+||. ..+.|++++.++..++++..+.. ....+++..++.++. .+
T Consensus 158 -~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~ 236 (365)
T TIGR02928 158 -NGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQE 236 (365)
T ss_pred -ccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHh
Confidence 1122235688999999875 57888888885 57999999999999999999863 223356665555544 44
Q ss_pred CCCCHHHHHHHHHHHHhhhHHh
Q psy2637 428 EGYSGSDLTNLAKDAALGPIRE 449 (502)
Q Consensus 428 ~g~s~~dL~~L~~~a~~~aire 449 (502)
.|..... ..+++.|+..+..+
T Consensus 237 ~Gd~R~a-l~~l~~a~~~a~~~ 257 (365)
T TIGR02928 237 HGDARKA-IDLLRVAGEIAERE 257 (365)
T ss_pred cCCHHHH-HHHHHHHHHHHHHc
Confidence 5655444 44666776655543
No 124
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.62 E-value=5.3e-14 Score=158.07 Aligned_cols=202 Identities=19% Similarity=0.268 Sum_probs=141.9
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCC---CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh----
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLR---TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK---- 300 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~---~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~---- 300 (502)
..++||+.+++.+.+.+.... .++. .|..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~------~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~ 527 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSR------AGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVS 527 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHh------cCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHH
Confidence 468999999999998875321 1222 233458999999999999999999999999999999886542
Q ss_pred --------hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCC-------CCCCc
Q psy2637 301 --------YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHS-------NSEHR 365 (502)
Q Consensus 301 --------~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~-------~~~~~ 365 (502)
|.|... ...+.+.++....+||+|||||.+.+ .+++.|+..++...- ..-.+
T Consensus 528 ~lig~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~~-----------~~~~~Ll~~ld~g~~~d~~g~~vd~~~ 594 (731)
T TIGR02639 528 RLIGAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHP-----------DIYNILLQVMDYATLTDNNGRKADFRN 594 (731)
T ss_pred HHhcCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcCH-----------HHHHHHHHhhccCeeecCCCcccCCCC
Confidence 222211 12344555556678999999998743 355666776653211 01135
Q ss_pred EEEEEEcCCCC-------------------------CCcHHHHccccceeeecCCCHHHHHHHHHHHHhhc---------
Q psy2637 366 LLVMGATNRPQ-------------------------ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKH--------- 411 (502)
Q Consensus 366 v~vIaaTN~~~-------------------------~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~--------- 411 (502)
++||+|||... .+.|+++.|++.+|.|.+.+.++..+|+...+.+.
T Consensus 595 ~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~ 674 (731)
T TIGR02639 595 VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNI 674 (731)
T ss_pred CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 78999998631 24678888999999999999999999999887641
Q ss_pred CCCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhhHH
Q psy2637 412 GNPLSQLELDAVAKLT--EGYSGSDLTNLAKDAALGPIR 448 (502)
Q Consensus 412 ~~~l~~~~l~~la~~t--~g~s~~dL~~L~~~a~~~air 448 (502)
...+++..++.++... ..+-.+.|+.+++......+.
T Consensus 675 ~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~ 713 (731)
T TIGR02639 675 KLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLS 713 (731)
T ss_pred eEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHH
Confidence 2345777778887753 345667777777766655544
No 125
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.61 E-value=2.1e-13 Score=154.65 Aligned_cols=202 Identities=22% Similarity=0.304 Sum_probs=138.7
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCC---CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhh-
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLR---TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSK- 300 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~---~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~- 300 (502)
..++||+.+++.+.+.+.... .++. .|...+||+||||||||.+|+++|+.+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTAR------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHh------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhh
Confidence 368999999999999885431 1222 233358999999999999999999988 457899999887532
Q ss_pred -----------hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCC-CCC------
Q psy2637 301 -----------YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLH-SNS------ 362 (502)
Q Consensus 301 -----------~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~-~~~------ 362 (502)
|+|..+. ..+.+..+..+++||+||||+.+.+ .+.+.|+..++... ...
T Consensus 640 ~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~-----------~v~~~Llq~ld~g~l~d~~Gr~vd 706 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP-----------DVLELFYQVFDKGVMEDGEGREID 706 (852)
T ss_pred hhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH-----------HHHHHHHHHhhcceeecCCCcEEe
Confidence 3333221 2244555666779999999987632 34555666664221 111
Q ss_pred CCcEEEEEEcCCCC-----------------------------CCcHHHHccccceeeecCCCHHHHHHHHHHHHhhc--
Q psy2637 363 EHRLLVMGATNRPQ-----------------------------ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKH-- 411 (502)
Q Consensus 363 ~~~v~vIaaTN~~~-----------------------------~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~-- 411 (502)
-.+.+||.|||... .+.|++++|++ +|.|.+++.++..+|+...+.+.
T Consensus 707 ~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~ 785 (852)
T TIGR03345 707 FKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIAR 785 (852)
T ss_pred ccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 13578899998521 14577788997 89999999999999998876541
Q ss_pred ------C--CCCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhhhHHh
Q psy2637 412 ------G--NPLSQLELDAVAKLTEG--YSGSDLTNLAKDAALGPIRE 449 (502)
Q Consensus 412 ------~--~~l~~~~l~~la~~t~g--~s~~dL~~L~~~a~~~aire 449 (502)
+ ..+++..++.|+....+ +-.+.|..+++......+.+
T Consensus 786 rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 786 RLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 2 24577778888877643 55677777777665555543
No 126
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.61 E-value=8.4e-15 Score=150.42 Aligned_cols=176 Identities=29% Similarity=0.446 Sum_probs=125.3
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcC--CCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh-hhhh-h
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGL--RTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS-KYVG-Q 304 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~--~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~-~~~g-~ 304 (502)
.|+||+++++.+..++.....+..+...+ ..++.++||+||||||||++|+++|+.++.+|+.+++..+.. .|.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 48999999999988776432222221111 134689999999999999999999999999999999876653 4554 2
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q psy2637 305 GEKLVRALFAMA-------------------------------------------------------------------- 316 (502)
Q Consensus 305 ~~~~~~~lf~~a-------------------------------------------------------------------- 316 (502)
.+..++.+|+.+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 223333332222
Q ss_pred -----------------------------------------------------------------------HhcCCeEEE
Q psy2637 317 -----------------------------------------------------------------------RELQPSIIF 325 (502)
Q Consensus 317 -----------------------------------------------------------------------~~~~p~iLf 325 (502)
.....||||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012457999
Q ss_pred EcCCcchhccccc-ChhHHHHHHHHHHHHHhccCCCC------CCCcEEEEEEcC----CCCCCcHHHHccccceeeecC
Q psy2637 326 IDEVDSVLSERKE-GEHEASRRLKTEFLLEFDGLHSN------SEHRLLVMGATN----RPQELDEAVLRRFSKRIYVTL 394 (502)
Q Consensus 326 LDEId~L~~~~~~-~~~~~~~~~~~~ll~~l~g~~~~------~~~~v~vIaaTN----~~~~l~~~l~rRf~~~I~i~~ 394 (502)
|||||+++..... +.......+|+.||..++|..-. ...++++||+.- .|+++-|.+.-||+.++.+..
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 332 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQA 332 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 9999999866422 22233455888999998874221 225688888763 466788999999999999999
Q ss_pred CCHHHHHHHH
Q psy2637 395 PDSKTRKSLL 404 (502)
Q Consensus 395 P~~~er~~il 404 (502)
++.++...|+
T Consensus 333 L~~edL~rIL 342 (441)
T TIGR00390 333 LTTDDFERIL 342 (441)
T ss_pred CCHHHHHHHh
Confidence 9999999888
No 127
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.61 E-value=1.3e-14 Score=153.32 Aligned_cols=197 Identities=23% Similarity=0.296 Sum_probs=148.5
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCce--EEe------
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATF--FSI------ 292 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~f--v~i------ 292 (502)
.++|..|++++|++.+.+.|..++.... -....||+||.|||||++||.+|+.+++.- ..-
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~r-----------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENGR-----------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhCc-----------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 4788899999999999999999985432 246789999999999999999999885431 111
Q ss_pred eccchhhh-hh---------hhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC
Q psy2637 293 SAASLTSK-YV---------GQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL 358 (502)
Q Consensus 293 ~~s~l~~~-~~---------g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~ 358 (502)
+|.++... +. ...-+.++.+.+.+.- .++.|.+|||++.|. ....+.||..++
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-----------~~afNALLKTLE-- 144 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-----------KQAFNALLKTLE-- 144 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-----------HHHHHHHhcccc--
Confidence 11111111 00 0112334555555432 345699999998873 334556666554
Q ss_pred CCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHH
Q psy2637 359 HSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNL 438 (502)
Q Consensus 359 ~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L 438 (502)
.++..|.+|.||..++.++..+++|+. .+.|...+.++....+...+.+.+...++..+..+++..+| +.+|...|
T Consensus 145 --EPP~hV~FIlATTe~~Kip~TIlSRcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 145 --EPPSHVKFILATTEPQKIPNTILSRCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred --cCccCeEEEEecCCcCcCchhhhhccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 567789999999999999999999996 89999999999999999999999999999999999999998 55566667
Q ss_pred HHHHHhh
Q psy2637 439 AKDAALG 445 (502)
Q Consensus 439 ~~~a~~~ 445 (502)
..++...
T Consensus 221 LDq~i~~ 227 (515)
T COG2812 221 LDQAIAF 227 (515)
T ss_pred HHHHHHc
Confidence 7766654
No 128
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.61 E-value=1.7e-14 Score=164.28 Aligned_cols=196 Identities=22% Similarity=0.357 Sum_probs=145.4
Q ss_pred HHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-------
Q psy2637 213 VVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC------- 285 (502)
Q Consensus 213 ~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~------- 285 (502)
.+...+.+...+..++.++|++...+.+.+.+... ...+++|+||||||||++|+.++...
T Consensus 158 ~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~ 225 (852)
T TIGR03346 158 KYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPE 225 (852)
T ss_pred HHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcC------------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCch
Confidence 34444444556668899999999888877766322 34678999999999999999999986
Q ss_pred ---cCceEEeeccchh--hhhhhhhHHHHHHHHHHHHhc-CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCC
Q psy2637 286 ---NATFFSISAASLT--SKYVGQGEKLVRALFAMAREL-QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLH 359 (502)
Q Consensus 286 ---~~~fv~i~~s~l~--~~~~g~~~~~~~~lf~~a~~~-~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~ 359 (502)
+.+++.++.+.+. ..|.|..+..+..++..+... .+.||||||||.+.+.+..... ....+.|...+
T Consensus 226 ~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~~~Lk~~l---- 298 (852)
T TIGR03346 226 SLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA---MDAGNMLKPAL---- 298 (852)
T ss_pred hhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch---hHHHHHhchhh----
Confidence 5678888877765 467788888889999888654 5789999999999764322111 11222222222
Q ss_pred CCCCCcEEEEEEcCCCC-----CCcHHHHccccceeeecCCCHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHhcCCC
Q psy2637 360 SNSEHRLLVMGATNRPQ-----ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK----HGNPLSQLELDAVAKLTEGY 430 (502)
Q Consensus 360 ~~~~~~v~vIaaTN~~~-----~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~----~~~~l~~~~l~~la~~t~g~ 430 (502)
....+.+|++|+..+ .+++++.|||. .|.++.|+.+++..|++.+..+ ++..+.+..+...+..+.+|
T Consensus 299 --~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 299 --ARGELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred --hcCceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 124689999998763 57999999996 7999999999999999887665 44567788888888777755
No 129
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.61 E-value=1.2e-15 Score=140.81 Aligned_cols=138 Identities=21% Similarity=0.391 Sum_probs=92.6
Q ss_pred ccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh-----
Q psy2637 230 IAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY----- 301 (502)
Q Consensus 230 iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~----- 301 (502)
|+|.+..++++.+.+ ..++..+.+|||+|++||||+++|++||+.+ +.||+.+||+.+....
T Consensus 1 liG~s~~m~~~~~~~----------~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQA----------KRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHH----------HHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHH----------HHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 578899999998887 5556667999999999999999999999987 5799999999876432
Q ss_pred hhhhH-------HHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc-------CCCCCCCcEE
Q psy2637 302 VGQGE-------KLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG-------LHSNSEHRLL 367 (502)
Q Consensus 302 ~g~~~-------~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g-------~~~~~~~~v~ 367 (502)
.|... ....++++.|.+ |+||||||+.|.+ .++..|+..++. .......+++
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPP-----------ELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-H-----------HHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhhHH-----------HHHHHHHHHHhhchhccccccccccccce
Confidence 22211 112378888877 9999999998843 355566666642 2222346899
Q ss_pred EEEEcCCC-------CCCcHHHHccccceeee
Q psy2637 368 VMGATNRP-------QELDEAVLRRFSKRIYV 392 (502)
Q Consensus 368 vIaaTN~~-------~~l~~~l~rRf~~~I~i 392 (502)
||++|+.+ ..+.+.++-|++ ++.+
T Consensus 137 iI~st~~~l~~~v~~g~fr~dLy~rL~-~~~i 167 (168)
T PF00158_consen 137 IIASTSKDLEELVEQGRFREDLYYRLN-VFTI 167 (168)
T ss_dssp EEEEESS-HHHHHHTTSS-HHHHHHHT-TEEE
T ss_pred EEeecCcCHHHHHHcCCChHHHHHHhc-eEec
Confidence 99999974 245555666664 4443
No 130
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.61 E-value=4e-13 Score=153.19 Aligned_cols=163 Identities=22% Similarity=0.311 Sum_probs=114.0
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCC---CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLR---TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY 301 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~---~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~ 301 (502)
..++|++.+++.+...+.... .++. .|...+||+||||||||++|+++|+.+ +.+++.++|+++....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~ 638 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSR------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKH 638 (852)
T ss_pred cccCCChHHHHHHHHHHHHHh------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccc
Confidence 469999999999999884321 1222 234568999999999999999999987 5789999998765421
Q ss_pred ------------hhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCC-CCC------
Q psy2637 302 ------------VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLH-SNS------ 362 (502)
Q Consensus 302 ------------~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~-~~~------ 362 (502)
.|..+ ...+.+..+....+||+||||+.+. ..+++.|+..++... ...
T Consensus 639 ~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka~-----------~~v~~~Ll~~l~~g~l~d~~g~~vd 705 (852)
T TIGR03346 639 SVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKAH-----------PDVFNVLLQVLDDGRLTDGQGRTVD 705 (852)
T ss_pred hHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccCC-----------HHHHHHHHHHHhcCceecCCCeEEe
Confidence 12111 1234444455556799999999773 335566666664221 110
Q ss_pred CCcEEEEEEcCCCC-------------------------CCcHHHHccccceeeecCCCHHHHHHHHHHHHh
Q psy2637 363 EHRLLVMGATNRPQ-------------------------ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLN 409 (502)
Q Consensus 363 ~~~v~vIaaTN~~~-------------------------~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~ 409 (502)
-.+++||+|||... .+.+.++.|++.++.|.+++.++..+|+...+.
T Consensus 706 ~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 706 FRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred cCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHH
Confidence 13467999999731 134667779998999999999999999987765
No 131
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.60 E-value=5.3e-14 Score=156.03 Aligned_cols=185 Identities=24% Similarity=0.305 Sum_probs=127.6
Q ss_pred CCCCCCcccccChHHHHH---HHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccch
Q psy2637 221 GGSPVQWQDIAGQEVAKQ---ALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~---~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l 297 (502)
...|.++++++|++.... .+.+++.. ....+++|+||||||||++|+++|+.++.+|+.+++...
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKA------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 356789999999999874 45555521 123689999999999999999999999999999887532
Q ss_pred hhhhhhhhHHHHHHHHHHHH-----hcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEc
Q psy2637 298 TSKYVGQGEKLVRALFAMAR-----ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGAT 372 (502)
Q Consensus 298 ~~~~~g~~~~~~~~lf~~a~-----~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaT 372 (502)
.. . .+...++.+. .....+|||||||.+... .+..|+..++. ..+++|++|
T Consensus 89 ~i---~----dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-----------qQdaLL~~lE~------g~IiLI~aT 144 (725)
T PRK13341 89 GV---K----DLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-----------QQDALLPWVEN------GTITLIGAT 144 (725)
T ss_pred hh---H----HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-----------HHHHHHHHhcC------ceEEEEEec
Confidence 11 1 1122222221 124579999999987321 22334444432 346777766
Q ss_pred CC--CCCCcHHHHccccceeeecCCCHHHHHHHHHHHHh-------hcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy2637 373 NR--PQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLN-------KHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAA 443 (502)
Q Consensus 373 N~--~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~-------~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~ 443 (502)
+. ...+++++++|+. ++.|++++.+++..+++..+. ..+..+++..++.|+..+.|. .+.+.++++.+.
T Consensus 145 Tenp~~~l~~aL~SR~~-v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD-~R~lln~Le~a~ 222 (725)
T PRK13341 145 TENPYFEVNKALVSRSR-LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD-ARSLLNALELAV 222 (725)
T ss_pred CCChHhhhhhHhhcccc-ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence 43 3578899999985 899999999999999999887 344567788888888887664 334444444433
No 132
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.60 E-value=7.1e-14 Score=133.92 Aligned_cols=192 Identities=22% Similarity=0.330 Sum_probs=141.2
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLT 298 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~ 298 (502)
..++.+++++|.+..++.|.+...... . +.|..++||+|++|||||++++++..+. +..++.+...++.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl------~--G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFL------Q--GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHH------c--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 457789999999999999988762211 1 3567899999999999999999999987 5667777766554
Q ss_pred hhhhhhhHHHHHHHHHHHHhc-CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCC
Q psy2637 299 SKYVGQGEKLVRALFAMAREL-QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQE 377 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~-~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~ 377 (502)
. +..+++..+.. .+-|||+|++. +.. .+ .-...|-..|+|.....+.+|+|.||+|+...
T Consensus 93 ~---------l~~l~~~l~~~~~kFIlf~DDLs--Fe~-----~d---~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 93 D---------LPELLDLLRDRPYKFILFCDDLS--FEE-----GD---TEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred c---------HHHHHHHHhcCCCCEEEEecCCC--CCC-----Cc---HHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 3 34555555532 34699999873 111 11 12234666788888888899999999997543
Q ss_pred CcH-----------------------HHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHH----HHHHhcCCC
Q psy2637 378 LDE-----------------------AVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELD----AVAKLTEGY 430 (502)
Q Consensus 378 l~~-----------------------~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~----~la~~t~g~ 430 (502)
+++ ++..||...+.|..|+.++..+|++.++.+.+..++.+.+. ..+....|.
T Consensus 154 v~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~R 233 (249)
T PF05673_consen 154 VPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGR 233 (249)
T ss_pred cchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCC
Confidence 321 33449999999999999999999999999999998875543 344455678
Q ss_pred CHHHHHHHHH
Q psy2637 431 SGSDLTNLAK 440 (502)
Q Consensus 431 s~~dL~~L~~ 440 (502)
||+.-...+.
T Consensus 234 SGRtA~QF~~ 243 (249)
T PF05673_consen 234 SGRTARQFID 243 (249)
T ss_pred CHHHHHHHHH
Confidence 8877666554
No 133
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.60 E-value=7.7e-14 Score=146.11 Aligned_cols=224 Identities=18% Similarity=0.234 Sum_probs=143.8
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-----cCceEEeeccchhhh
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-----NATFFSISAASLTSK 300 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~i~~s~l~~~ 300 (502)
..+.++|.+...+.+...+.... . +..+.+++|+||||||||++++.+++.+ +..++.++|....+.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~------~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL------R--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh------C--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 44679999999999988873211 1 2345679999999999999999999877 467889998654321
Q ss_pred ----------hhh--------hhHHHHHHHHHHHHh-cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCC
Q psy2637 301 ----------YVG--------QGEKLVRALFAMARE-LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSN 361 (502)
Q Consensus 301 ----------~~g--------~~~~~~~~lf~~a~~-~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 361 (502)
..+ ........+.+.... ..+.+|+|||+|.+..... ...+..++..++..
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~--- 169 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEY--- 169 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhcc---
Confidence 111 012222333333332 2457999999999862111 11233344433322
Q ss_pred CCCcEEEEEEcCCC---CCCcHHHHcccc-ceeeecCCCHHHHHHHHHHHHhhc--CCCCCHHHHHHHHHhcCCCC--HH
Q psy2637 362 SEHRLLVMGATNRP---QELDEAVLRRFS-KRIYVTLPDSKTRKSLLEKLLNKH--GNPLSQLELDAVAKLTEGYS--GS 433 (502)
Q Consensus 362 ~~~~v~vIaaTN~~---~~l~~~l~rRf~-~~I~i~~P~~~er~~il~~~l~~~--~~~l~~~~l~~la~~t~g~s--~~ 433 (502)
...++.+|+++|.. +.+++.+.+|+. ..+.|++++.++..++++..+... ...+++..++.+++.+.+.+ .+
T Consensus 170 ~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r 249 (394)
T PRK00411 170 PGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDAR 249 (394)
T ss_pred CCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHH
Confidence 12357888888865 357787877774 468999999999999999988642 23467788888888774322 23
Q ss_pred HHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhc
Q psy2637 434 DLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIR 479 (502)
Q Consensus 434 dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~ 479 (502)
.+..++..|+..+..+. ...|+.+|+..|+..+.
T Consensus 250 ~a~~ll~~a~~~a~~~~------------~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 250 VAIDLLRRAGLIAEREG------------SRKVTEEDVRKAYEKSE 283 (394)
T ss_pred HHHHHHHHHHHHHHHcC------------CCCcCHHHHHHHHHHHH
Confidence 33456666665554432 24577777777776553
No 134
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=3.5e-14 Score=150.54 Aligned_cols=188 Identities=22% Similarity=0.259 Sum_probs=134.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc-----------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT----------- 288 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~----------- 288 (502)
+.+.|.+|++++|++.+++.+..++... ..+..+||+||+|+|||++|+++|+.+...
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 3467889999999999999999988432 234668999999999999999999987432
Q ss_pred --------------eEEeeccchhhhhhhhhHHHHHHHHHHHH----hcCCeEEEEcCCcchhcccccChhHHHHHHHHH
Q psy2637 289 --------------FFSISAASLTSKYVGQGEKLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTE 350 (502)
Q Consensus 289 --------------fv~i~~s~l~~~~~g~~~~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ 350 (502)
++.+++... . .-..++.+.+.+. .....|++|||+|.+.. ..++.
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~ 140 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNS 140 (451)
T ss_pred cHHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHH
Confidence 222221110 0 0112222222221 23457999999998832 12445
Q ss_pred HHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCC
Q psy2637 351 FLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGY 430 (502)
Q Consensus 351 ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~ 430 (502)
|+..++. ++..+++|.+|+.+..+.+.+.+|+. .+.|..++.++....+...+.+.+..++++.++.++..+.|.
T Consensus 141 LLk~lEe----p~~~~~~Il~t~~~~kl~~tI~sRc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gd 215 (451)
T PRK06305 141 LLKTLEE----PPQHVKFFLATTEIHKIPGTILSRCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGS 215 (451)
T ss_pred HHHHhhc----CCCCceEEEEeCChHhcchHHHHhce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 6666653 33457778888888899999999995 899999999999999999998888889999999999999874
Q ss_pred CHHHHHHHHHH
Q psy2637 431 SGSDLTNLAKD 441 (502)
Q Consensus 431 s~~dL~~L~~~ 441 (502)
-+ .+.++++.
T Consensus 216 lr-~a~~~Lek 225 (451)
T PRK06305 216 LR-DAESLYDY 225 (451)
T ss_pred HH-HHHHHHHH
Confidence 44 33333333
No 135
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=6.8e-14 Score=149.36 Aligned_cols=195 Identities=22% Similarity=0.300 Sum_probs=134.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc-------eE-E
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT-------FF-S 291 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~-------fv-~ 291 (502)
..++|.+|++++|++.+.+.+..++... ..+..+||+||+|+|||++|+.+|+.++.. .- .
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 3467889999999999999999988432 224557899999999999999999987531 00 0
Q ss_pred eeccchhhh----h------hhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc
Q psy2637 292 ISAASLTSK----Y------VGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG 357 (502)
Q Consensus 292 i~~s~l~~~----~------~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g 357 (502)
.+|..+... + .......++.+.+.+.. ..+.|++|||+|.|.. ...+.|+..++.
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLLk~LEe 145 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALLKTLEE 145 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHHHHHhc
Confidence 112111110 0 00111223444444332 2346999999998732 123455555543
Q ss_pred CCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHH
Q psy2637 358 LHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTN 437 (502)
Q Consensus 358 ~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~ 437 (502)
++..+++|.+|+.++.+.+++.+|+. .+.|.+|+.++....+..++...+..+++..+..++..+.|-- +++..
T Consensus 146 ----pp~~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~l-r~al~ 219 (486)
T PRK14953 146 ----PPPRTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGM-RDAAS 219 (486)
T ss_pred ----CCCCeEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHH
Confidence 33446666677777888889999996 8999999999999999999999998899999999999988744 44444
Q ss_pred HHHHH
Q psy2637 438 LAKDA 442 (502)
Q Consensus 438 L~~~a 442 (502)
+++.+
T Consensus 220 ~Ldkl 224 (486)
T PRK14953 220 LLDQA 224 (486)
T ss_pred HHHHH
Confidence 44444
No 136
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.60 E-value=1.2e-14 Score=149.34 Aligned_cols=176 Identities=28% Similarity=0.432 Sum_probs=125.6
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCC--CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh-hhhh-h
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLR--TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS-KYVG-Q 304 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~--~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~-~~~g-~ 304 (502)
.++|++.+++.+..++.....+..+..... ..+.++||+||||+|||++|+++|+.++.||+.++++.+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 499999999999988854222111111121 23589999999999999999999999999999999987764 4655 2
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q psy2637 305 GEKLVRALFAMA-------------------------------------------------------------------- 316 (502)
Q Consensus 305 ~~~~~~~lf~~a-------------------------------------------------------------------- 316 (502)
.+..++.+++.|
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 233333333333
Q ss_pred --------------------------------------------------------------------H--hcCCeEEEE
Q psy2637 317 --------------------------------------------------------------------R--ELQPSIIFI 326 (502)
Q Consensus 317 --------------------------------------------------------------------~--~~~p~iLfL 326 (502)
. ....|||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 114479999
Q ss_pred cCCcchhccccc-ChhHHHHHHHHHHHHHhccCCCC------CCCcEEEEEEc----CCCCCCcHHHHccccceeeecCC
Q psy2637 327 DEVDSVLSERKE-GEHEASRRLKTEFLLEFDGLHSN------SEHRLLVMGAT----NRPQELDEAVLRRFSKRIYVTLP 395 (502)
Q Consensus 327 DEId~L~~~~~~-~~~~~~~~~~~~ll~~l~g~~~~------~~~~v~vIaaT----N~~~~l~~~l~rRf~~~I~i~~P 395 (502)
||||+++..... +.......+|..||..++|..-. ...++++||+. ..|+++-|.+.-||+.++.+..+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 999999866432 22233455888999998874221 22568888876 34667779999999999999999
Q ss_pred CHHHHHHHH
Q psy2637 396 DSKTRKSLL 404 (502)
Q Consensus 396 ~~~er~~il 404 (502)
+.++..+|+
T Consensus 336 ~~~dL~~IL 344 (443)
T PRK05201 336 TEEDFVRIL 344 (443)
T ss_pred CHHHHHHHh
Confidence 999999888
No 137
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.60 E-value=1.6e-13 Score=145.08 Aligned_cols=228 Identities=21% Similarity=0.295 Sum_probs=138.3
Q ss_pred CCCCCccccc-ChH--HHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeecc
Q psy2637 222 GSPVQWQDIA-GQE--VAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAA 295 (502)
Q Consensus 222 ~~~~~~~~ii-G~~--~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s 295 (502)
.+..+|++++ |.+ .+...+.++...+.. .-+.+..+++|+||+|+|||+|++++++.+ +..++.+++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~------~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ------GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc------ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4556788876 532 233444444321100 001233679999999999999999999976 5778888877
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 296 SLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 296 ~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
.+...+...........|.... ..+++|+|||++.+.+... .+.++...++..... ...+|++++..|
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~---------~qeelf~l~N~l~~~--~k~IIlts~~~p 246 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA---------TQEEFFHTFNSLHTE--GKLIVISSTCAP 246 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh---------hHHHHHHHHHHHHHC--CCcEEEecCCCH
Confidence 6655443332211112333332 3457999999998743311 122233332222211 123444444444
Q ss_pred C---CCcHHHHcccc--ceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhh
Q psy2637 376 Q---ELDEAVLRRFS--KRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIREL 450 (502)
Q Consensus 376 ~---~l~~~l~rRf~--~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel 450 (502)
. .+++.+.+||. .++.+.+|+.++|..+++..+...+..++++.++.++....+-.++-+..|..-+...+...+
T Consensus 247 ~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~ 326 (445)
T PRK12422 247 QDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKL 326 (445)
T ss_pred HHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3 56789999995 578889999999999999999999888999999999998876444333333332211222222
Q ss_pred hhhhhhhhcccCCCcccHHHHHHHHHhh
Q psy2637 451 NADQVIKVDLKSVRNISYRDFLESLKRI 478 (502)
Q Consensus 451 ~~~~~~~v~~~~~~~It~~d~~~al~~~ 478 (502)
....|+.+++.++++..
T Consensus 327 -----------~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 327 -----------SHQLLYVDDIKALLHDV 343 (445)
T ss_pred -----------hCCCCCHHHHHHHHHHh
Confidence 12357777777777654
No 138
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=3.9e-14 Score=147.28 Aligned_cols=191 Identities=19% Similarity=0.285 Sum_probs=126.7
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceE-Eeeccchh-----
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFF-SISAASLT----- 298 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv-~i~~s~l~----- 298 (502)
.|++|+|++.+++.+..++..+..... ..+ ..+..+||+||+|+|||++|+++|+.+...-- .-.|....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~---~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVA---AAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccc---ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 588999999999999999976532111 111 23577999999999999999999997743210 00111000
Q ss_pred ------hh-h-----hhhhHHHHHHHHHHHHhc----CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCC
Q psy2637 299 ------SK-Y-----VGQGEKLVRALFAMAREL----QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNS 362 (502)
Q Consensus 299 ------~~-~-----~g~~~~~~~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~ 362 (502)
+- + .......++.+++.+... +..|+||||+|.|... ..+.|+..++. +
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk~LEe----p 144 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLKAVEE----P 144 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHHHhhc----C
Confidence 00 0 001123356666665432 3469999999988322 23456666653 3
Q ss_pred CCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy2637 363 EHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAK 440 (502)
Q Consensus 363 ~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~ 440 (502)
+.++++|.+|+.++.+.+.+++|+. .+.|++|+.++..+.+.. +.+ +++.....++..+.|..+.++..+..
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~-~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~~~ 216 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCR-HVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLATD 216 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCe-EEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 3345555566668999999999995 999999999998777752 222 45677788899999988877665543
No 139
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.59 E-value=8.6e-14 Score=134.36 Aligned_cols=184 Identities=16% Similarity=0.221 Sum_probs=113.7
Q ss_pred CCCccccc--ChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchh
Q psy2637 224 PVQWQDIA--GQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLT 298 (502)
Q Consensus 224 ~~~~~~ii--G~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~ 298 (502)
+.+|++++ +...+++.+++++. ...+.+++|+||+|||||++|+++++.+ +.+++.++|..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 34566765 46667888877752 1235789999999999999999999987 4678889988776
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcC-CCCC
Q psy2637 299 SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATN-RPQE 377 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN-~~~~ 377 (502)
... ..++... ..+++|+|||+|.+.... . .+..+...++..... + ..+|.+++ .+..
T Consensus 79 ~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~-----~----~~~~L~~~l~~~~~~-~--~~iIits~~~~~~ 136 (226)
T TIGR03420 79 QAD--------PEVLEGL--EQADLVCLDDVEAIAGQP-----E----WQEALFHLYNRVREA-G--GRLLIAGRAAPAQ 136 (226)
T ss_pred HhH--------HHHHhhc--ccCCEEEEeChhhhcCCh-----H----HHHHHHHHHHHHHHc-C--CeEEEECCCChHH
Confidence 432 1222222 234699999999884321 0 011222222211111 1 13444554 3333
Q ss_pred C--c-HHHHcccc--ceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2637 378 L--D-EAVLRRFS--KRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDA 442 (502)
Q Consensus 378 l--~-~~l~rRf~--~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a 442 (502)
+ . +.+.+|+. ..+.+++|+.+++..+++.++.+.+..+++..++.++.... -+.+++..+++.+
T Consensus 137 ~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~ 205 (226)
T TIGR03420 137 LPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDAL 205 (226)
T ss_pred CCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHH
Confidence 2 2 77887873 57899999999999999887766666666655555555322 3444555544443
No 140
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.59 E-value=6.8e-14 Score=152.71 Aligned_cols=219 Identities=17% Similarity=0.247 Sum_probs=140.7
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc----------cCceEEeeccch
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC----------NATFFSISAASL 297 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv~i~~s~l 297 (502)
+.|.|.+..+++|..++.... .+ ..++..++|+|+||||||++++.+.+++ ...++.|||..+
T Consensus 755 D~LPhREeEIeeLasfL~paI------kg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGI------KQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHH------hc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 678999999999988873221 11 1222345799999999999999998766 145789999654
Q ss_pred hhhhh----------------h-hhHHHHHHHHHHHHh--cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC
Q psy2637 298 TSKYV----------------G-QGEKLVRALFAMARE--LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL 358 (502)
Q Consensus 298 ~~~~~----------------g-~~~~~~~~lf~~a~~--~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~ 358 (502)
...+. | .....+..+|..... ....||+|||||.|.... +. ++..|+....
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----QD----VLYnLFR~~~-- 897 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----QK----VLFTLFDWPT-- 897 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----HH----HHHHHHHHhh--
Confidence 32210 0 112334455554422 234699999999995431 11 2222222211
Q ss_pred CCCCCCcEEEEEEcCC---CCCCcHHHHccccc-eeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcC---CCC
Q psy2637 359 HSNSEHRLLVMGATNR---PQELDEAVLRRFSK-RIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTE---GYS 431 (502)
Q Consensus 359 ~~~~~~~v~vIaaTN~---~~~l~~~l~rRf~~-~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~---g~s 431 (502)
.....+.|||++|. ++.+++.+.+||.. .+.|++++.+++.+|+...+......+++..++.+|+.+. |..
T Consensus 898 --~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDA 975 (1164)
T PTZ00112 898 --KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDI 975 (1164)
T ss_pred --ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHH
Confidence 22356899999986 45677888888864 4889999999999999999986555578888888888544 433
Q ss_pred HHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhcCC
Q psy2637 432 GSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIRRS 481 (502)
Q Consensus 432 ~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~~s 481 (502)
+.+|. +|+.|... .....|+.+|+.+|+..+..+
T Consensus 976 RKALD-ILRrAgEi---------------kegskVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112 976 RKALQ-ICRKAFEN---------------KRGQKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred HHHHH-HHHHHHhh---------------cCCCccCHHHHHHHHHHHHhh
Confidence 34433 33333321 112367778888777655443
No 141
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=5.9e-14 Score=147.01 Aligned_cols=186 Identities=18% Similarity=0.224 Sum_probs=130.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCce-E--------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATF-F-------- 290 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~f-v-------- 290 (502)
+.+.|.+|++++|++.+++.|..++... ..+..+||+||+|+|||++|+++|+.+...- .
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~~-----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRMG-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHhC-----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 4578889999999999999999888432 2346699999999999999999999885421 0
Q ss_pred -Eeeccchhh-------------hhhh---hhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHH
Q psy2637 291 -SISAASLTS-------------KYVG---QGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKT 349 (502)
Q Consensus 291 -~i~~s~l~~-------------~~~g---~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~ 349 (502)
.-.|..... .+.+ .....++.+.+.+.. ....+++|||+|.+... .++
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~-----------~~~ 145 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA-----------AFN 145 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-----------HHH
Confidence 011211100 0001 112233444444421 23369999999988321 233
Q ss_pred HHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCC
Q psy2637 350 EFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEG 429 (502)
Q Consensus 350 ~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g 429 (502)
.++..++ .++..+++|.+|+.+..+.+.+.+|+. +++|..++.++....+...+...+..+++..++.++..+.|
T Consensus 146 ~LLk~LE----ep~~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g 220 (397)
T PRK14955 146 AFLKTLE----EPPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG 220 (397)
T ss_pred HHHHHHh----cCCCCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 4555554 233456666677777888889999996 89999999999999999999888888999999999999987
Q ss_pred CCH
Q psy2637 430 YSG 432 (502)
Q Consensus 430 ~s~ 432 (502)
...
T Consensus 221 ~lr 223 (397)
T PRK14955 221 SMR 223 (397)
T ss_pred CHH
Confidence 444
No 142
>PRK06893 DNA replication initiation factor; Validated
Probab=99.59 E-value=1e-13 Score=134.54 Aligned_cols=211 Identities=14% Similarity=0.167 Sum_probs=126.7
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccch
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASL 297 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l 297 (502)
..++.+|++++|.+... .+..+... ... ...+.++|+||||||||+|+++++++. +.....++....
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~~-------~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~ 78 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRKN-------FID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS 78 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHHH-------hhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh
Confidence 35667899998765432 12212110 011 123458999999999999999999886 234444444321
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCC
Q psy2637 298 TSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQE 377 (502)
Q Consensus 298 ~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~ 377 (502)
.. ....+++.. .+..+|+|||++.+.+... ....+...++..... +..+++++++..|..
T Consensus 79 ~~--------~~~~~~~~~--~~~dlLilDDi~~~~~~~~---------~~~~l~~l~n~~~~~-~~~illits~~~p~~ 138 (229)
T PRK06893 79 QY--------FSPAVLENL--EQQDLVCLDDLQAVIGNEE---------WELAIFDLFNRIKEQ-GKTLLLISADCSPHA 138 (229)
T ss_pred hh--------hhHHHHhhc--ccCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHHc-CCcEEEEeCCCChHH
Confidence 11 011222222 2447999999998854311 111223333222221 223445555555655
Q ss_pred Cc---HHHHcccc--ceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhh
Q psy2637 378 LD---EAVLRRFS--KRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNA 452 (502)
Q Consensus 378 l~---~~l~rRf~--~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~ 452 (502)
++ +.+.+|+. .++.++.|+.+++.++++..+...+..++++.++.|++...|..+ .+..++......+..
T Consensus 139 l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r-~l~~~l~~l~~~~~~---- 213 (229)
T PRK06893 139 LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMH-TLFDALDLLDKASLQ---- 213 (229)
T ss_pred ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHH-HHHHHHHHHHHHHHh----
Confidence 44 78888764 578999999999999999999988899999999999999986433 444444432222221
Q ss_pred hhhhhhcccCCCcccHHHHHHHH
Q psy2637 453 DQVIKVDLKSVRNISYRDFLESL 475 (502)
Q Consensus 453 ~~~~~v~~~~~~~It~~d~~~al 475 (502)
..+.||...+.+++
T Consensus 214 ---------~~~~it~~~v~~~L 227 (229)
T PRK06893 214 ---------AQRKLTIPFVKEIL 227 (229)
T ss_pred ---------cCCCCCHHHHHHHh
Confidence 12457777776655
No 143
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=1e-13 Score=150.82 Aligned_cols=195 Identities=21% Similarity=0.233 Sum_probs=138.8
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEe-------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSI------- 292 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i------- 292 (502)
.++.|.+|++++|++.+++.|..++... ..+..+||+||+|+|||++|+.+|+.+++.....
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~g-----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFETG-----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 3478889999999999999999988432 2356799999999999999999999885432111
Q ss_pred ------eccchhhh----hh------hhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHH
Q psy2637 293 ------SAASLTSK----YV------GQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFL 352 (502)
Q Consensus 293 ------~~s~l~~~----~~------g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll 352 (502)
+|..+... +. ...-..++.+++.+.. ....|++|||+|.|.. ...+.|+
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naLL 153 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNALL 153 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHHH
Confidence 11111110 00 0112334556555542 2347999999998832 2344566
Q ss_pred HHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCH
Q psy2637 353 LEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSG 432 (502)
Q Consensus 353 ~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~ 432 (502)
..++. ++..+.+|.+|+..+.+.+.+++|+. .+.|..|+.++....+...+.+.+..+++..+..++..+.|. .
T Consensus 154 KtLEe----Pp~~~~fIl~tte~~kll~tI~SRcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gd-l 227 (598)
T PRK09111 154 KTLEE----PPPHVKFIFATTEIRKVPVTVLSRCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGS-V 227 (598)
T ss_pred HHHHh----CCCCeEEEEEeCChhhhhHHHHhhee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 65552 34457777778877788889999995 899999999999999999999999999999999999999874 4
Q ss_pred HHHHHHHHHH
Q psy2637 433 SDLTNLAKDA 442 (502)
Q Consensus 433 ~dL~~L~~~a 442 (502)
+++.+++..+
T Consensus 228 r~al~~Ldkl 237 (598)
T PRK09111 228 RDGLSLLDQA 237 (598)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 144
>KOG0991|consensus
Probab=99.59 E-value=1.4e-14 Score=135.75 Aligned_cols=193 Identities=22% Similarity=0.259 Sum_probs=142.8
Q ss_pred HhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc-----CceEEe
Q psy2637 218 ILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN-----ATFFSI 292 (502)
Q Consensus 218 ~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~i 292 (502)
+++++.|..+.||+|.++.++.+.-..... ..++++|.||||||||+-+.++|+++- ..+.++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~g------------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEG------------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcC------------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 556788889999999999999998776322 247899999999999999999999882 235667
Q ss_pred eccchhhhhhhhhHHHHHHHHHHHHh-cCC---eEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEE
Q psy2637 293 SAASLTSKYVGQGEKLVRALFAMARE-LQP---SIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLV 368 (502)
Q Consensus 293 ~~s~l~~~~~g~~~~~~~~lf~~a~~-~~p---~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~v 368 (502)
|+++-.+- .-.... -..|.+-+- ..| .||+|||+|++. .+.+++++|..... ....++
T Consensus 85 NASdeRGI--DvVRn~-IK~FAQ~kv~lp~grhKIiILDEADSMT----~gAQQAlRRtMEiy-----------S~ttRF 146 (333)
T KOG0991|consen 85 NASDERGI--DVVRNK-IKMFAQKKVTLPPGRHKIIILDEADSMT----AGAQQALRRTMEIY-----------SNTTRF 146 (333)
T ss_pred cCcccccc--HHHHHH-HHHHHHhhccCCCCceeEEEeeccchhh----hHHHHHHHHHHHHH-----------cccchh
Confidence 77664431 111111 122332222 122 499999999983 33345555544321 123688
Q ss_pred EEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2637 369 MGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKD 441 (502)
Q Consensus 369 IaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~ 441 (502)
..+||..+.+-+++-+|+. .+.+...+..+...-+...++..+..++++.++.+.--.+|.....|++|...
T Consensus 147 alaCN~s~KIiEPIQSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst 218 (333)
T KOG0991|consen 147 ALACNQSEKIIEPIQSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQST 218 (333)
T ss_pred hhhhcchhhhhhhHHhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHH
Confidence 8899999999999999996 78888888888888888888888999999999999999999888888887654
No 145
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=6.2e-14 Score=145.55 Aligned_cols=192 Identities=22% Similarity=0.238 Sum_probs=134.4
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeec-----
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISA----- 294 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~----- 294 (502)
+.+.|.+|++++|++.+++.+...+... ..+.++||+||||+|||++|+++++.+..+.....+
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 3578889999999999999999988432 235689999999999999999999987542111100
Q ss_pred --cchhhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEE
Q psy2637 295 --ASLTSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLV 368 (502)
Q Consensus 295 --s~l~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~v 368 (502)
.++.. ........+..+++.+.. ..+.+|+|||+|.+... .++.++..++. ++..+++
T Consensus 78 ~~~~l~~-~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~-----------~~~~ll~~le~----~~~~~~~ 141 (367)
T PRK14970 78 NIFELDA-ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA-----------AFNAFLKTLEE----PPAHAIF 141 (367)
T ss_pred ceEEecc-ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH-----------HHHHHHHHHhC----CCCceEE
Confidence 00100 001112334555555432 23469999999977321 23445555543 2334666
Q ss_pred EEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy2637 369 MGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAK 440 (502)
Q Consensus 369 IaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~ 440 (502)
|.+|+.+..+.+++.+|+. .+.++.|+.++...++...+.+.+..++++.++.++..+.| +.+.+...++
T Consensus 142 Il~~~~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~le 211 (367)
T PRK14970 142 ILATTEKHKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFD 211 (367)
T ss_pred EEEeCCcccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 6677777888899999995 89999999999999999999999988999999999998876 3333333333
No 146
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.4e-13 Score=148.86 Aligned_cols=192 Identities=20% Similarity=0.233 Sum_probs=138.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceE----Eeecc
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFF----SISAA 295 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv----~i~~s 295 (502)
..+.|..|++++|++.+++.|..++... ....++||+||+|+|||++|+++|+.+++... .-.|+
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 3467889999999999999999988432 12467999999999999999999999854211 01111
Q ss_pred chh----------------hhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHh
Q psy2637 296 SLT----------------SKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEF 355 (502)
Q Consensus 296 ~l~----------------~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l 355 (502)
... ....+.....++.+++.+.. ....|++|||+|.|.. ...+.|+..+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~naLLK~L 145 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNALLKTL 145 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHHHHHHH
Confidence 100 00011223445666665543 2336999999998832 2345667666
Q ss_pred ccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHH
Q psy2637 356 DGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDL 435 (502)
Q Consensus 356 ~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL 435 (502)
+ .++..+++|++|+.++.+.+.+++|+. .+.|..++.++....+...+.+.+..+++..+..++..+.|.....+
T Consensus 146 E----ePp~~tvfIL~t~~~~~llpTIrSRc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 146 E----EPPPRVVFVLATTDPQRVLPTIISRCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred h----cCCcCeEEEEEeCChhhhhHHHHhhee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 6 334567888888888888899999995 89999999999999999999888888888999999999988655444
Q ss_pred HHH
Q psy2637 436 TNL 438 (502)
Q Consensus 436 ~~L 438 (502)
..+
T Consensus 221 ~lL 223 (620)
T PRK14948 221 SLL 223 (620)
T ss_pred HHH
Confidence 433
No 147
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.58 E-value=1.7e-13 Score=132.63 Aligned_cols=203 Identities=16% Similarity=0.191 Sum_probs=127.0
Q ss_pred CCCCCccccc--ChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccc
Q psy2637 222 GSPVQWQDIA--GQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAAS 296 (502)
Q Consensus 222 ~~~~~~~~ii--G~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~ 296 (502)
.++.+|++++ +.+.+...+..+.. . .....+++|+||+|||||++|+++++.. +.+++.+++..
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~----------~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA----------G-PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh----------c-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 4556788877 34566666666552 1 1235789999999999999999999976 56788888866
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCC-C
Q psy2637 297 LTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR-P 375 (502)
Q Consensus 297 l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~-~ 375 (502)
.... +. ....+++|+|||+|.+... .. ..+...++..... ...++|.+++. +
T Consensus 81 ~~~~------------~~--~~~~~~~liiDdi~~l~~~----~~-------~~L~~~~~~~~~~--~~~~vl~~~~~~~ 133 (227)
T PRK08903 81 PLLA------------FD--FDPEAELYAVDDVERLDDA----QQ-------IALFNLFNRVRAH--GQGALLVAGPAAP 133 (227)
T ss_pred hHHH------------Hh--hcccCCEEEEeChhhcCch----HH-------HHHHHHHHHHHHc--CCcEEEEeCCCCH
Confidence 5322 11 1123579999999987321 11 1222223222111 12334444443 3
Q ss_pred --CCCcHHHHccc--cceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhh
Q psy2637 376 --QELDEAVLRRF--SKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELN 451 (502)
Q Consensus 376 --~~l~~~l~rRf--~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~ 451 (502)
..+.+.+.+|| ...+.+++|+.+++..++...+.+.+..+++..++.+++...| +.+++..+++.....+.
T Consensus 134 ~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~---- 208 (227)
T PRK08903 134 LALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSL---- 208 (227)
T ss_pred HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH----
Confidence 24567888887 3588999999998888888887777777777777777764443 44455555544222111
Q ss_pred hhhhhhhcccCCCcccHHHHHHHHH
Q psy2637 452 ADQVIKVDLKSVRNISYRDFLESLK 476 (502)
Q Consensus 452 ~~~~~~v~~~~~~~It~~d~~~al~ 476 (502)
.....||...+.+++.
T Consensus 209 ---------~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 209 ---------EQKRPVTLPLLREMLA 224 (227)
T ss_pred ---------HhCCCCCHHHHHHHHh
Confidence 1235788887777764
No 148
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.58 E-value=6e-14 Score=145.87 Aligned_cols=222 Identities=24% Similarity=0.351 Sum_probs=146.9
Q ss_pred cccChHHHHHHHHHHHhCcCCChhh----h--hcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh-hh
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPEL----F--TGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS-KY 301 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l----~--~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~-~~ 301 (502)
.++||+.+++.+..++.....+-.. . .++.....++||+||||||||++|+++|+.++.||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 4899999999998776321111000 0 012223578999999999999999999999999999999887653 46
Q ss_pred hhhh-HHHHHHHHHHH----HhcCCeEEEEcCCcchhcccccCh---hHHHHHHHHHHHHHhccCCCC---------CCC
Q psy2637 302 VGQG-EKLVRALFAMA----RELQPSIIFIDEVDSVLSERKEGE---HEASRRLKTEFLLEFDGLHSN---------SEH 364 (502)
Q Consensus 302 ~g~~-~~~~~~lf~~a----~~~~p~iLfLDEId~L~~~~~~~~---~~~~~~~~~~ll~~l~g~~~~---------~~~ 364 (502)
.|.. +..+..++..+ ....++||||||||.+.+...... ......+++.|+..++|.... +..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 6653 33333333322 223568999999999976432211 112235777788888764321 123
Q ss_pred cEEEEEEcCCC---------------------------C-----------------------CCcHHHHccccceeeecC
Q psy2637 365 RLLVMGATNRP---------------------------Q-----------------------ELDEAVLRRFSKRIYVTL 394 (502)
Q Consensus 365 ~v~vIaaTN~~---------------------------~-----------------------~l~~~l~rRf~~~I~i~~ 394 (502)
+.++|.|+|.. . .+.|+++.|++.++.|.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~p 317 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEK 317 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCC
Confidence 56777787760 0 034666679998899999
Q ss_pred CCHHHHHHHHHHH----Hhhc-------C--CCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhhHHhh
Q psy2637 395 PDSKTRKSLLEKL----LNKH-------G--NPLSQLELDAVAKLT--EGYSGSDLTNLAKDAALGPIREL 450 (502)
Q Consensus 395 P~~~er~~il~~~----l~~~-------~--~~l~~~~l~~la~~t--~g~s~~dL~~L~~~a~~~airel 450 (502)
.+.++..+|+... +.++ + ..+++..++.+++.. ..+-.+.|+.+++.......-++
T Consensus 318 L~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 318 LDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 9999999998752 2221 2 235677888888763 35667888888887777666655
No 149
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.57 E-value=9.5e-13 Score=149.64 Aligned_cols=203 Identities=20% Similarity=0.260 Sum_probs=138.6
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCC---CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhh-
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLR---TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSK- 300 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~---~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~- 300 (502)
..++||+.+++.+...+.... .++. .|...+||+||+|||||++|+++|+.+ ..+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~------~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~ 582 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRAR------VGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKH 582 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHh------hcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccc
Confidence 468999999999998884321 1222 233458999999999999999999987 468999998876432
Q ss_pred -----------hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCC-C------CC
Q psy2637 301 -----------YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLH-S------NS 362 (502)
Q Consensus 301 -----------~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~-~------~~ 362 (502)
|.|..+ ...+.+..+....+||+|||+|.+.+ .+++.|+..++... . ..
T Consensus 583 ~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~~-----------~v~~~Llq~le~g~~~d~~g~~v~ 649 (821)
T CHL00095 583 TVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAHP-----------DIFNLLLQILDDGRLTDSKGRTID 649 (821)
T ss_pred cHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCCH-----------HHHHHHHHHhccCceecCCCcEEe
Confidence 222221 12345555666668999999997733 35566677666321 1 11
Q ss_pred CCcEEEEEEcCCCCC-------------------------------------CcHHHHccccceeeecCCCHHHHHHHHH
Q psy2637 363 EHRLLVMGATNRPQE-------------------------------------LDEAVLRRFSKRIYVTLPDSKTRKSLLE 405 (502)
Q Consensus 363 ~~~v~vIaaTN~~~~-------------------------------------l~~~l~rRf~~~I~i~~P~~~er~~il~ 405 (502)
-.+++||+|||.... +.|++++|++.+|.|.+.+.++..+|+.
T Consensus 650 ~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~ 729 (821)
T CHL00095 650 FKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAE 729 (821)
T ss_pred cCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHH
Confidence 146889999885310 2356778998899999999999999998
Q ss_pred HHHhhc---------CCCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhhHHh
Q psy2637 406 KLLNKH---------GNPLSQLELDAVAKLT--EGYSGSDLTNLAKDAALGPIRE 449 (502)
Q Consensus 406 ~~l~~~---------~~~l~~~~l~~la~~t--~g~s~~dL~~L~~~a~~~aire 449 (502)
..+.+. ...+++...+.+++.. ..+-.+.|+.+++......+.+
T Consensus 730 ~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 730 IMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred HHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 877642 2345677778888753 2455677777776666555443
No 150
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=1.8e-13 Score=144.83 Aligned_cols=197 Identities=20% Similarity=0.324 Sum_probs=126.1
Q ss_pred CCCCCccccc-ChH--HHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-----cCceEEee
Q psy2637 222 GSPVQWQDIA-GQE--VAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-----NATFFSIS 293 (502)
Q Consensus 222 ~~~~~~~~ii-G~~--~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~i~ 293 (502)
.+..+|++++ |.+ .+.....+....+ + ...+++||||+|+|||+|++++++++ +..++.++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~----------~-~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNP----------G-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCc----------C-CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4556788876 532 2333333333111 1 13579999999999999999999986 35678888
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcC
Q psy2637 294 AASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATN 373 (502)
Q Consensus 294 ~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN 373 (502)
+.++...+.......-..-|....+.++.+|+|||++.+.+... .+.+++..++...... ..+||++.+
T Consensus 168 ~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~---------~q~elf~~~n~l~~~~--k~iIitsd~ 236 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTG---------VQTELFHTFNELHDSG--KQIVICSDR 236 (440)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHH---------HHHHHHHHHHHHHHcC--CeEEEECCC
Confidence 88776655433221111123333333578999999998743311 1223333333322222 235554445
Q ss_pred CCCC---CcHHHHcccc--ceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2637 374 RPQE---LDEAVLRRFS--KRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKD 441 (502)
Q Consensus 374 ~~~~---l~~~l~rRf~--~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~ 441 (502)
.|.. +.+.+.+||. .++.+.+|+.+.|..|++..+...+..++++.++.|+....| +.++|..++..
T Consensus 237 ~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~ 308 (440)
T PRK14088 237 EPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIK 308 (440)
T ss_pred CHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHH
Confidence 5543 5577888884 377899999999999999999988888999999999999876 44455554443
No 151
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.56 E-value=1.8e-12 Score=147.34 Aligned_cols=204 Identities=20% Similarity=0.266 Sum_probs=132.5
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCC---CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLR---TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY 301 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~---~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~ 301 (502)
..++|++.+++.|...+.... .++. .|...+||+||+|||||++|++||+.+ +.+++.++|+++....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~ 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSR------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHH------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhh
Confidence 468999999999998884321 1222 222468999999999999999999987 4679999998875421
Q ss_pred -----hhhh-----HHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC-CCC---C---CC
Q psy2637 302 -----VGQG-----EKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL-HSN---S---EH 364 (502)
Q Consensus 302 -----~g~~-----~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~-~~~---~---~~ 364 (502)
.|.. ......+.+..+....+||+|||++.+.+ .+++.|+..++.. ... . -.
T Consensus 642 ~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~-----------~v~~~Ll~ile~g~l~d~~gr~vd~r 710 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP-----------DVFNILLQVLDDGRLTDGQGRTVDFR 710 (857)
T ss_pred hHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH-----------HHHHHHHHHHhhCceecCCceEEeec
Confidence 1110 00011233333444558999999987732 3455566666421 111 0 12
Q ss_pred cEEEEEEcCCC-------------------------CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhc-------C
Q psy2637 365 RLLVMGATNRP-------------------------QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKH-------G 412 (502)
Q Consensus 365 ~v~vIaaTN~~-------------------------~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~-------~ 412 (502)
+.+||+|||.. ..+.++++.|++.++.|.+++.++..+|+...+.+. +
T Consensus 711 n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~g 790 (857)
T PRK10865 711 NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERG 790 (857)
T ss_pred ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35688999863 124578888998899999999999999988877552 2
Q ss_pred --CCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhhHH
Q psy2637 413 --NPLSQLELDAVAKLTE--GYSGSDLTNLAKDAALGPIR 448 (502)
Q Consensus 413 --~~l~~~~l~~la~~t~--g~s~~dL~~L~~~a~~~air 448 (502)
..+++..++.|+...- .+-.+.|+.+++.-....+.
T Consensus 791 i~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la 830 (857)
T PRK10865 791 YEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLA 830 (857)
T ss_pred CcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHH
Confidence 2356677777765431 23456777766665554443
No 152
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.56 E-value=3.7e-13 Score=131.10 Aligned_cols=207 Identities=12% Similarity=0.094 Sum_probs=127.0
Q ss_pred CCCCCccccc-C-hHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc---CceEEeeccc
Q psy2637 222 GSPVQWQDIA-G-QEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN---ATFFSISAAS 296 (502)
Q Consensus 222 ~~~~~~~~ii-G-~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~---~~fv~i~~s~ 296 (502)
.+..+|++++ | +..+...+.++... ....+++|+||+|||||++++++++... ..+..++...
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALRQ------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4555778776 3 55566666665421 1235899999999999999999998763 3344444433
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEc-CCC
Q psy2637 297 LTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGAT-NRP 375 (502)
Q Consensus 297 l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaT-N~~ 375 (502)
.... ...+.+.... ..+|+|||++.+..+. . ....+...++..... .+..+|.|+ +.|
T Consensus 84 ~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~-----~----~~~~lf~l~n~~~e~--g~~~li~ts~~~p 142 (235)
T PRK08084 84 RAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE-----L----WEMAIFDLYNRILES--GRTRLLITGDRPP 142 (235)
T ss_pred Hhhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH-----H----HHHHHHHHHHHHHHc--CCCeEEEeCCCCh
Confidence 2111 1112222221 2589999999874321 1 111222222222111 123344444 455
Q ss_pred CC---CcHHHHcccc--ceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhh
Q psy2637 376 QE---LDEAVLRRFS--KRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIREL 450 (502)
Q Consensus 376 ~~---l~~~l~rRf~--~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel 450 (502)
.. +.+.+.+|+. .++.+.+|+.+++.++++..+...+..++++.++.++....|- .+.+..++......++
T Consensus 143 ~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d-~r~l~~~l~~l~~~~l--- 218 (235)
T PRK08084 143 RQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDRE-MRTLFMTLDQLDRASI--- 218 (235)
T ss_pred HHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHH---
Confidence 44 5789999984 4889999999999999999888888899999999999999864 4444444443221111
Q ss_pred hhhhhhhhcccCCCcccHHHHHHHH
Q psy2637 451 NADQVIKVDLKSVRNISYRDFLESL 475 (502)
Q Consensus 451 ~~~~~~~v~~~~~~~It~~d~~~al 475 (502)
...+.||...+.+++
T Consensus 219 ----------~~~~~it~~~~k~~l 233 (235)
T PRK08084 219 ----------TAQRKLTIPFVKEIL 233 (235)
T ss_pred ----------hcCCCCCHHHHHHHH
Confidence 123457777766655
No 153
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.7e-13 Score=144.80 Aligned_cols=189 Identities=19% Similarity=0.233 Sum_probs=132.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceE---------
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFF--------- 290 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv--------- 290 (502)
..++|.+|++++|++.+++.++.++... .-+..+||+||+|+|||++|+.+|+.+++.--
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~-----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMD-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 3478889999999999999999987432 22466999999999999999999999865210
Q ss_pred -Eeeccchh------h-------hhhhh---hHHHHHHHHHHHH----hcCCeEEEEcCCcchhcccccChhHHHHHHHH
Q psy2637 291 -SISAASLT------S-------KYVGQ---GEKLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEGEHEASRRLKT 349 (502)
Q Consensus 291 -~i~~s~l~------~-------~~~g~---~~~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~ 349 (502)
.-.|.... . .+.+. ....++.+.+.+. .....|++|||+|.|.. ..++
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~a~n 145 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------AAFN 145 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------HHHH
Confidence 01121110 0 00110 1223344444332 12346999999998832 1244
Q ss_pred HHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCC
Q psy2637 350 EFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEG 429 (502)
Q Consensus 350 ~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g 429 (502)
.|+..++. ++..+++|.+|+.+..+.+.+.+|+. .+.|..++.++....+...+...+..+++..++.++..+.|
T Consensus 146 aLLK~LEe----Pp~~tv~IL~t~~~~kLl~TI~SRc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 146 AFLKTLEE----PPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHHHhC----CCCCeEEEEEeCChhhhhHHHHhhce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 56666653 33446666677777888899999995 89999999999999999999888888999999999999987
Q ss_pred CCHHHH
Q psy2637 430 YSGSDL 435 (502)
Q Consensus 430 ~s~~dL 435 (502)
.-+..+
T Consensus 221 dlr~al 226 (620)
T PRK14954 221 SMRDAQ 226 (620)
T ss_pred CHHHHH
Confidence 554333
No 154
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=5.3e-13 Score=143.79 Aligned_cols=167 Identities=20% Similarity=0.284 Sum_probs=115.3
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc-----cCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC-----NATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSE 335 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~ 335 (502)
...++|+|++|+|||+|+++|++.+ +..++++++.++...+...........|.... .++++|+||||+.+..+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gk 392 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDK 392 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCC
Confidence 3569999999999999999999976 45778898888776665443322222233222 24689999999988543
Q ss_pred cccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC----CCCcHHHHccccc--eeeecCCCHHHHHHHHHHHHh
Q psy2637 336 RKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP----QELDEAVLRRFSK--RIYVTLPDSKTRKSLLEKLLN 409 (502)
Q Consensus 336 ~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~----~~l~~~l~rRf~~--~I~i~~P~~~er~~il~~~l~ 409 (502)
.. .+.+|+..++....... -+| .|+|.+ ..+++.+.+||.. ++.+..|+.+.|..|++..+.
T Consensus 393 e~---------tqeeLF~l~N~l~e~gk--~II-ITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 393 ES---------TQEEFFHTFNTLHNANK--QIV-LSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred HH---------HHHHHHHHHHHHHhcCC--CEE-EecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 21 12233333333322211 233 356543 3577889999854 678889999999999999999
Q ss_pred hcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2637 410 KHGNPLSQLELDAVAKLTEGYSGSDLTNLAKD 441 (502)
Q Consensus 410 ~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~ 441 (502)
..+..++++.++.|+....+ +.++|..++..
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~r 491 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIR 491 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 99999999999999998875 44555554443
No 155
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.55 E-value=9.4e-14 Score=141.13 Aligned_cols=160 Identities=28% Similarity=0.398 Sum_probs=103.3
Q ss_pred CCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc-------Cc--eEEee
Q psy2637 223 SPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN-------AT--FFSIS 293 (502)
Q Consensus 223 ~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~-------~~--fv~i~ 293 (502)
.+.+|.+|+|++.+++.+.-.+..+ ...++||.|+||||||++|++++..+. .+ +..+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 4568999999999999887654221 136899999999999999999999873 21 11111
Q ss_pred cc-ch-----------------------hhhhhhhh--HH--------HHHHHHHHHHhcCCeEEEEcCCcchhcccccC
Q psy2637 294 AA-SL-----------------------TSKYVGQG--EK--------LVRALFAMARELQPSIIFIDEVDSVLSERKEG 339 (502)
Q Consensus 294 ~s-~l-----------------------~~~~~g~~--~~--------~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~ 339 (502)
+. +. .+..+|.. .. ...+.+..+ ..++||+|||+.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A---~~GiL~lDEInrl~~----- 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARA---NRGYLYIDEVNLLED----- 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEc---CCCeEEecChHhCCH-----
Confidence 00 00 00011210 00 001122222 237999999998733
Q ss_pred hhHHHHHHHHHHHHHhc---------cCCCCCCCcEEEEEEcCCCC-CCcHHHHccccceeeecCCCH-HHHHHHHHHHH
Q psy2637 340 EHEASRRLKTEFLLEFD---------GLHSNSEHRLLVMGATNRPQ-ELDEAVLRRFSKRIYVTLPDS-KTRKSLLEKLL 408 (502)
Q Consensus 340 ~~~~~~~~~~~ll~~l~---------g~~~~~~~~v~vIaaTN~~~-~l~~~l~rRf~~~I~i~~P~~-~er~~il~~~l 408 (502)
..+..++..++ |.....+.++++|+|+|..+ .++++++.||...+.++.|.. ++|.+++....
T Consensus 143 ------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 143 ------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred ------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 24444555443 22233446789999999754 689999999998888988866 99999998754
No 156
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.5e-13 Score=148.29 Aligned_cols=221 Identities=42% Similarity=0.616 Sum_probs=184.9
Q ss_pred ChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcC
Q psy2637 250 RPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDE 328 (502)
Q Consensus 250 ~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDE 328 (502)
.++.+.... .++.+++++||||||||+++++++.. +..+..++......++.+..+.....+|+.+....|+++++||
T Consensus 6 ~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~ 84 (494)
T COG0464 6 EPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDE 84 (494)
T ss_pred CHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeech
Confidence 344444443 56799999999999999999999999 6666888889999999999999999999999999999999999
Q ss_pred CcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHc--cccceeeecCCCHHHHHHHHHH
Q psy2637 329 VDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTRKSLLEK 406 (502)
Q Consensus 329 Id~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~ 406 (502)
+|.+.+.+.........++..+++..+++.. ... +.+++.+|.+..+++++.+ ||+..+.+..|+...+.+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~ 161 (494)
T COG0464 85 IDALAPKRSSDQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQI 161 (494)
T ss_pred hhhcccCccccccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHH
Confidence 9999998877566677888889999999887 445 8999999999999999888 9999999999999999888877
Q ss_pred HHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhcCC
Q psy2637 407 LLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIRRS 481 (502)
Q Consensus 407 ~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~~s 481 (502)
........ .+.+...++..+.|+.++++..++..+...++++.. ........++.+|+.++++.+.++
T Consensus 162 ~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~------~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 162 HTRLMFLG-PPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI------DLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHhcCCCc-ccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh------ccCcccccccHHHHHHHHHhcCcc
Confidence 76544322 267789999999999999999999999888777641 111223568899999999998764
No 157
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.54 E-value=5.3e-13 Score=128.57 Aligned_cols=195 Identities=19% Similarity=0.320 Sum_probs=121.7
Q ss_pred CCCCccccc-C--hHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-----cCceEEeec
Q psy2637 223 SPVQWQDIA-G--QEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-----NATFFSISA 294 (502)
Q Consensus 223 ~~~~~~~ii-G--~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~i~~ 294 (502)
+..+|++++ | .+.+...+......+ .....+++|+||+|+|||+|+++++++. +..++.+++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP----------GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST----------TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC----------CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 455788875 4 455566665554222 1233579999999999999999999875 456888888
Q ss_pred cchhhhhhhhhHHH-HHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcC
Q psy2637 295 ASLTSKYVGQGEKL-VRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATN 373 (502)
Q Consensus 295 s~l~~~~~g~~~~~-~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN 373 (502)
.++...+....... +..+.+.. ....+|+||+++.+... ...+..+...++...... .-+|+++..
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~---------~~~q~~lf~l~n~~~~~~--k~li~ts~~ 139 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGK---------QRTQEELFHLFNRLIESG--KQLILTSDR 139 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTH---------HHHHHHHHHHHHHHHHTT--SEEEEEESS
T ss_pred HHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCc---------hHHHHHHHHHHHHHHhhC--CeEEEEeCC
Confidence 88776655443221 11222221 24579999999988432 123334444444333332 235555545
Q ss_pred CCC---CCcHHHHccccc--eeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2637 374 RPQ---ELDEAVLRRFSK--RIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKD 441 (502)
Q Consensus 374 ~~~---~l~~~l~rRf~~--~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~ 441 (502)
.|. .+.+.+.+||.. ++.+..|+.+.|..+++..+...+..++++.++.+++...+ +.++|..++..
T Consensus 140 ~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~ 211 (219)
T PF00308_consen 140 PPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNR 211 (219)
T ss_dssp -TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHH
T ss_pred CCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 554 467888899865 78899999999999999999999999999999999998764 55566655544
No 158
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.54 E-value=2e-13 Score=139.09 Aligned_cols=160 Identities=26% Similarity=0.368 Sum_probs=106.3
Q ss_pred CCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc-------CceEEe---
Q psy2637 223 SPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN-------ATFFSI--- 292 (502)
Q Consensus 223 ~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~-------~~fv~i--- 292 (502)
+..+|.+|+|+++++..|...+..|. ..++||.||+|||||++|+++++.+. .||...
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p~------------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDPK------------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCCC------------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 44589999999999999988875542 36899999999999999999988762 233200
Q ss_pred ---eccchhhhh-------------------hhhhHHHH------------------HHHHHHHHhcCCeEEEEcCCcch
Q psy2637 293 ---SAASLTSKY-------------------VGQGEKLV------------------RALFAMARELQPSIIFIDEVDSV 332 (502)
Q Consensus 293 ---~~s~l~~~~-------------------~g~~~~~~------------------~~lf~~a~~~~p~iLfLDEId~L 332 (502)
.|+.+.+.. .+.++..+ .+++..| ..++||+|||+.+
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A---~~GiL~lDEInrL 156 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKA---NRGILYVDEVNLL 156 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeec---CCCEEEecChHhC
Confidence 000000000 01111111 1122222 2389999999988
Q ss_pred hcccccChhHHHHHHHHHHHHHhc---------cCCCCCCCcEEEEEEcCCCC-CCcHHHHccccceeeecCCC-HHHHH
Q psy2637 333 LSERKEGEHEASRRLKTEFLLEFD---------GLHSNSEHRLLVMGATNRPQ-ELDEAVLRRFSKRIYVTLPD-SKTRK 401 (502)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~ll~~l~---------g~~~~~~~~v~vIaaTN~~~-~l~~~l~rRf~~~I~i~~P~-~~er~ 401 (502)
.+. .+..|+..++ |.....+.++++|+|.|..+ .+.+.++.||...+.+..|+ .+++.
T Consensus 157 ~~~-----------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 157 DDH-----------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRV 225 (350)
T ss_pred CHH-----------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHH
Confidence 433 3444444442 33333456788998888764 79999999999899999997 59999
Q ss_pred HHHHHHH
Q psy2637 402 SLLEKLL 408 (502)
Q Consensus 402 ~il~~~l 408 (502)
+|++...
T Consensus 226 ~il~~~~ 232 (350)
T CHL00081 226 KIVEQRT 232 (350)
T ss_pred HHHHhhh
Confidence 9998753
No 159
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=9.7e-13 Score=144.18 Aligned_cols=193 Identities=21% Similarity=0.246 Sum_probs=132.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEE---eecc-
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFS---ISAA- 295 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~---i~~s- 295 (502)
+.+.|.+|++++|++.+++.|..++... ..+..+||+||+|+|||++|+.+++.++..... ..|.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 4578899999999999999998887432 124567999999999999999999987532110 0111
Q ss_pred -----chhhh----h------hhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc
Q psy2637 296 -----SLTSK----Y------VGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD 356 (502)
Q Consensus 296 -----~l~~~----~------~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~ 356 (502)
.+... + .......++.+.+.+.. ....|++|||+|.|.. ..++.|+..++
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~naLLk~LE 145 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNALLKTLE 145 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHHHHHHHh
Confidence 11000 0 00111223444433322 2346999999998832 22445666655
Q ss_pred cCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHH
Q psy2637 357 GLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLT 436 (502)
Q Consensus 357 g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~ 436 (502)
. ++..+++|.+++..+.+.+.+.+|+. .+.|..++..+...++...+.+.+..+++..+..++..+.| +.+++.
T Consensus 146 e----pp~~tv~Il~t~~~~kll~tI~SR~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al 219 (585)
T PRK14950 146 E----PPPHAIFILATTEVHKVPATILSRCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAE 219 (585)
T ss_pred c----CCCCeEEEEEeCChhhhhHHHHhccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 3 23456777777777778888999985 89999999999999999999998888999999999999987 444444
Q ss_pred HHHH
Q psy2637 437 NLAK 440 (502)
Q Consensus 437 ~L~~ 440 (502)
++++
T Consensus 220 ~~Le 223 (585)
T PRK14950 220 NLLQ 223 (585)
T ss_pred HHHH
Confidence 4433
No 160
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=1.3e-12 Score=138.49 Aligned_cols=173 Identities=16% Similarity=0.259 Sum_probs=116.5
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc-----cCceEEeeccchhhhhhhhhHHHHHHHHHHHH--hcCCeEEEEcCCcchh
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC-----NATFFSISAASLTSKYVGQGEKLVRALFAMAR--ELQPSIIFIDEVDSVL 333 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~--~~~p~iLfLDEId~L~ 333 (502)
..+++|+|++|+|||+|++++++.+ +..++.+++.++...+........ ..++... -..+.+|+|||++.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-~~~~~~~~~~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-KEIEQFKNEICQNDVLIIDDVQFLS 219 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-hHHHHHHHHhccCCEEEEecccccc
Confidence 4679999999999999999999965 467788888887766554433211 1122111 1355799999999874
Q ss_pred cccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCC-CC---CCcHHHHcccc--ceeeecCCCHHHHHHHHHHH
Q psy2637 334 SERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR-PQ---ELDEAVLRRFS--KRIYVTLPDSKTRKSLLEKL 407 (502)
Q Consensus 334 ~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~-~~---~l~~~l~rRf~--~~I~i~~P~~~er~~il~~~ 407 (502)
++. ..+.+|...++....... .+|.|++. |. .+++.+.+||. .++.+.+|+.++|.++++..
T Consensus 220 ~k~---------~~~e~lf~l~N~~~~~~k---~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YKE---------KTNEIFFTIFNNFIENDK---QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CCH---------HHHHHHHHHHHHHHHcCC---cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 321 122233333333222222 34445554 43 46788899985 46788899999999999999
Q ss_pred HhhcCC--CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhH
Q psy2637 408 LNKHGN--PLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPI 447 (502)
Q Consensus 408 l~~~~~--~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~ai 447 (502)
+...+. .++++.++.|+..+.| +++.+..++......+.
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~ 328 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQ 328 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHh
Confidence 988664 5889999999999987 56677777766654433
No 161
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.53 E-value=3.4e-13 Score=133.52 Aligned_cols=135 Identities=24% Similarity=0.292 Sum_probs=92.1
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh--hhhhhh----HHH-HH-------------------HHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS--KYVGQG----EKL-VR-------------------ALFA 314 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~--~~~g~~----~~~-~~-------------------~lf~ 314 (502)
+.++||+||||||||++|+++|+.++.+|+.++|..-.. ..+|.. ... .. +.+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 578999999999999999999999999999998864321 222211 110 00 1111
Q ss_pred HHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC-------CCC-----CCCcEEEEEEcCCC-----CC
Q psy2637 315 MARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL-------HSN-----SEHRLLVMGATNRP-----QE 377 (502)
Q Consensus 315 ~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~-------~~~-----~~~~v~vIaaTN~~-----~~ 377 (502)
.|.. .+++|+||||+.+.++ .++.|+..++.. ... ...+++||+|+|.. ..
T Consensus 101 ~A~~-~g~~lllDEi~r~~~~-----------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKPE-----------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHHH-cCCEEEEcchhhCCHH-----------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 2222 3479999999987332 344444444321 000 12468999999975 25
Q ss_pred CcHHHHccccceeeecCCCHHHHHHHHHHHH
Q psy2637 378 LDEAVLRRFSKRIYVTLPDSKTRKSLLEKLL 408 (502)
Q Consensus 378 l~~~l~rRf~~~I~i~~P~~~er~~il~~~l 408 (502)
+++++++||. .+.++.|+.++-.+|+....
T Consensus 169 l~~aL~~R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 169 TQDALLDRLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ccHHHHhhcE-EEECCCCCHHHHHHHHHHhh
Confidence 6899999995 89999999999999998764
No 162
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.52 E-value=2.4e-12 Score=127.55 Aligned_cols=145 Identities=17% Similarity=0.152 Sum_probs=96.3
Q ss_pred CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCC------------CCCCcHHHHcccc
Q psy2637 320 QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR------------PQELDEAVLRRFS 387 (502)
Q Consensus 320 ~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~------------~~~l~~~l~rRf~ 387 (502)
-|+||||||++.|. -.....|-+.++.- -.+ +||.|||+ |..++..+++|+
T Consensus 291 VpGVLFIDEvHmLD-----------IE~FsFlnrAlEse----~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl- 353 (450)
T COG1224 291 VPGVLFIDEVHMLD-----------IECFSFLNRALESE----LAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRL- 353 (450)
T ss_pred ecceEEEechhhhh-----------HHHHHHHHHHhhcc----cCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhhe-
Confidence 37899999998771 11122222333321 122 55567774 457889999999
Q ss_pred ceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCccc
Q psy2637 388 KRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNIS 467 (502)
Q Consensus 388 ~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It 467 (502)
..|...+++.++.++|++..+...+..++++.++.|+.....-|-+---+|+.-|..-+.++. ...|.
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg------------~~~V~ 421 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG------------SKRVE 421 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC------------CCeee
Confidence 489999999999999999999999999999999999987765444444444444444444432 35788
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy2637 468 YRDFLESLKRIRRSVSPSSLIQYEAWNR 495 (502)
Q Consensus 468 ~~d~~~al~~~~~s~~~~~l~~~~~w~~ 495 (502)
.+|+..|..-+-.. ....+-.+.|..
T Consensus 422 ~~dVe~a~~lF~D~--krSv~~v~~~~~ 447 (450)
T COG1224 422 VEDVERAKELFLDV--KRSVEYVEKYEG 447 (450)
T ss_pred hhHHHHHHHHHhhH--HHHHHHHHHHHh
Confidence 99999887655331 233444444543
No 163
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=1.2e-12 Score=143.42 Aligned_cols=183 Identities=22% Similarity=0.271 Sum_probs=134.9
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc------------
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT------------ 288 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~------------ 288 (502)
.+.|.+|++++|++.+++.+..++... ..+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~~-----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIATN-----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 477889999999999999999998432 234668999999999999999999987421
Q ss_pred -------------eEEeeccchhhhhhhhhHHHHHHHHHHHHhc----CCeEEEEcCCcchhcccccChhHHHHHHHHHH
Q psy2637 289 -------------FFSISAASLTSKYVGQGEKLVRALFAMAREL----QPSIIFIDEVDSVLSERKEGEHEASRRLKTEF 351 (502)
Q Consensus 289 -------------fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~l 351 (502)
++.+++++ ......++.+.+.+... ...|++|||+|.|.. ..++.|
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~naL 141 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNAF 141 (614)
T ss_pred hHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHHH
Confidence 22222211 01123345555544322 235999999998832 234456
Q ss_pred HHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCC
Q psy2637 352 LLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYS 431 (502)
Q Consensus 352 l~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s 431 (502)
+..++. ++..+++|.+|+.+..+.+.+++|+. ++.|..++.++....+...+.+.+..+++..+..++..+.|..
T Consensus 142 LK~LEe----pp~~tifIL~tt~~~kIl~tI~SRc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdl 216 (614)
T PRK14971 142 LKTLEE----PPSYAIFILATTEKHKILPTILSRCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGM 216 (614)
T ss_pred HHHHhC----CCCCeEEEEEeCCchhchHHHHhhhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 666653 33456777777777889999999995 8999999999999999999999999999999999999998755
Q ss_pred HHHHH
Q psy2637 432 GSDLT 436 (502)
Q Consensus 432 ~~dL~ 436 (502)
+..+.
T Consensus 217 r~al~ 221 (614)
T PRK14971 217 RDALS 221 (614)
T ss_pred HHHHH
Confidence 54443
No 164
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.49 E-value=8.1e-13 Score=134.60 Aligned_cols=156 Identities=26% Similarity=0.371 Sum_probs=102.0
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-------cCceE--------
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-------NATFF-------- 290 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-------~~~fv-------- 290 (502)
.|..|+|++.++..+.-.+..| ...+++|.|++|+|||+++++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 5788999999999987666433 24789999999999999999999876 22221
Q ss_pred -Eeeccc-------------------hhh-----hhhhhhH--HH--------HHHHHHHHHhcCCeEEEEcCCcchhcc
Q psy2637 291 -SISAAS-------------------LTS-----KYVGQGE--KL--------VRALFAMARELQPSIIFIDEVDSVLSE 335 (502)
Q Consensus 291 -~i~~s~-------------------l~~-----~~~g~~~--~~--------~~~lf~~a~~~~p~iLfLDEId~L~~~ 335 (502)
..+|.. ++. ...|... .. ..+++..+. .++||||||+.+.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~---~GvL~lDEi~~L~~- 145 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARAN---RGILYIDEVNLLED- 145 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceecc---CCEEEecChHhCCH-
Confidence 111111 111 1222210 00 012222222 38999999998833
Q ss_pred cccChhHHHHHHHHHHHHHhc---------cCCCCCCCcEEEEEEcCCCC-CCcHHHHccccceeeecCCCH-HHHHHHH
Q psy2637 336 RKEGEHEASRRLKTEFLLEFD---------GLHSNSEHRLLVMGATNRPQ-ELDEAVLRRFSKRIYVTLPDS-KTRKSLL 404 (502)
Q Consensus 336 ~~~~~~~~~~~~~~~ll~~l~---------g~~~~~~~~v~vIaaTN~~~-~l~~~l~rRf~~~I~i~~P~~-~er~~il 404 (502)
..+..++..++ |.....+.++++|+++|..+ .++++++.||...+.++.|.. ++|.+++
T Consensus 146 ----------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 146 ----------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred ----------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHH
Confidence 23444555442 22223346788999988654 799999999998888998865 8888998
Q ss_pred HHH
Q psy2637 405 EKL 407 (502)
Q Consensus 405 ~~~ 407 (502)
+..
T Consensus 216 ~~~ 218 (337)
T TIGR02030 216 ERR 218 (337)
T ss_pred Hhh
Confidence 774
No 165
>PRK08727 hypothetical protein; Validated
Probab=99.49 E-value=2.5e-12 Score=125.19 Aligned_cols=180 Identities=17% Similarity=0.232 Sum_probs=114.2
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhccccc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE 338 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~ 338 (502)
..++|+||+|||||+++++++..+ +...+.++..+.... ....++.. .+..+|+|||++.+.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~l--~~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR--------LRDALEAL--EGRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh--------HHHHHHHH--hcCCEEEEeCcccccCChH-
Confidence 569999999999999999998775 445555555443221 12233322 2346999999998854321
Q ss_pred ChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcC-CCCC---CcHHHHccc--cceeeecCCCHHHHHHHHHHHHhhcC
Q psy2637 339 GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATN-RPQE---LDEAVLRRF--SKRIYVTLPDSKTRKSLLEKLLNKHG 412 (502)
Q Consensus 339 ~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN-~~~~---l~~~l~rRf--~~~I~i~~P~~~er~~il~~~l~~~~ 412 (502)
. ...++..++..... ...+|.|+| .|.. +.+.+.+|| ..++.+++|+.+++.++++.++...+
T Consensus 111 -~-------~~~lf~l~n~~~~~---~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 111 -D-------EVALFDFHNRARAA---GITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred -H-------HHHHHHHHHHHHHc---CCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 1 11222222222111 133555565 4544 468999996 35789999999999999999888888
Q ss_pred CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHh
Q psy2637 413 NPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKR 477 (502)
Q Consensus 413 ~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~ 477 (502)
..++++.++.|+..+.|.-...+. +++.....+..+ .+.||...+.+.+..
T Consensus 180 l~l~~e~~~~La~~~~rd~r~~l~-~L~~l~~~~~~~-------------~~~it~~~~~~~l~~ 230 (233)
T PRK08727 180 LALDEAAIDWLLTHGERELAGLVA-LLDRLDRESLAA-------------KRRVTVPFLRRVLEE 230 (233)
T ss_pred CCCCHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHh-------------CCCCCHHHHHHHHhh
Confidence 899999999999998864444433 233222111111 235787777776643
No 166
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.49 E-value=5.7e-13 Score=147.17 Aligned_cols=158 Identities=27% Similarity=0.406 Sum_probs=109.3
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc--------------------
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-------------------- 285 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-------------------- 285 (502)
.|.+|+|++.++..+.-.+..+ ...+|||.||+|||||++|+++|+.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 5789999999998887766433 12579999999999999999999987
Q ss_pred ---------------cCceEEeeccchhhhhhhhhH--HH--------HHHHHHHHHhcCCeEEEEcCCcchhcccccCh
Q psy2637 286 ---------------NATFFSISAASLTSKYVGQGE--KL--------VRALFAMARELQPSIIFIDEVDSVLSERKEGE 340 (502)
Q Consensus 286 ---------------~~~fv~i~~s~l~~~~~g~~~--~~--------~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~ 340 (502)
..||+.+.++......+|... .. ..+++..+. .+|||||||+.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~---~GiL~lDEi~~l~~------ 140 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAH---RGILYIDEVNLLDD------ 140 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecC---CCeEEeChhhhCCH------
Confidence 357777777655444444321 10 022233333 37999999998833
Q ss_pred hHHHHHHHHHHHHHhc---------cCCCCCCCcEEEEEEcCCC-CCCcHHHHccccceeeecCC-CHHHHHHHHHHHHh
Q psy2637 341 HEASRRLKTEFLLEFD---------GLHSNSEHRLLVMGATNRP-QELDEAVLRRFSKRIYVTLP-DSKTRKSLLEKLLN 409 (502)
Q Consensus 341 ~~~~~~~~~~ll~~l~---------g~~~~~~~~v~vIaaTN~~-~~l~~~l~rRf~~~I~i~~P-~~~er~~il~~~l~ 409 (502)
.++..|+..++ |.....+.++++|+|+|.. ..+.+.+++||+..+.++.| +.+++.+++.....
T Consensus 141 -----~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 141 -----HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred -----HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHh
Confidence 24445555553 2222334678999999964 46889999999877888776 46778888876443
No 167
>PRK06620 hypothetical protein; Validated
Probab=99.48 E-value=2.1e-12 Score=123.97 Aligned_cols=173 Identities=17% Similarity=0.255 Sum_probs=110.4
Q ss_pred CCCCCcccccCh---HHHHHHHHHHHhCcCCChhhhhcCCC-C-CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccc
Q psy2637 222 GSPVQWQDIAGQ---EVAKQALHEMVILPSLRPELFTGLRT-P-SRGLLLFGPPGNGKTMLARAVATACNATFFSISAAS 296 (502)
Q Consensus 222 ~~~~~~~~iiG~---~~~~~~l~~~v~~~~~~~~l~~~~~~-~-~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~ 296 (502)
.+..+|++++.- +.+...+.++. ..++. + ..+++|+||||+|||++++++++..+..++. ...
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~----------~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQ----------CGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHH----------HccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 344567775543 34555555544 11221 2 2679999999999999999999887653322 110
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC
Q psy2637 297 LTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ 376 (502)
Q Consensus 297 l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~ 376 (502)
. . ...+ ....+|+|||||.+. .. .+...++...+. ...++|+++..|.
T Consensus 78 ~-------~----~~~~-----~~~d~lliDdi~~~~-------~~-------~lf~l~N~~~e~--g~~ilits~~~p~ 125 (214)
T PRK06620 78 F-------N----EEIL-----EKYNAFIIEDIENWQ-------EP-------ALLHIFNIINEK--QKYLLLTSSDKSR 125 (214)
T ss_pred h-------c----hhHH-----hcCCEEEEeccccch-------HH-------HHHHHHHHHHhc--CCEEEEEcCCCcc
Confidence 0 0 1111 123699999998541 11 222222222222 2356776766554
Q ss_pred --CCcHHHHccccc--eeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy2637 377 --ELDEAVLRRFSK--RIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAK 440 (502)
Q Consensus 377 --~l~~~l~rRf~~--~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~ 440 (502)
.+ +.+++|+.. ++.+..|+.+++..+++..+...+..++++.++.|+....|- .+.+..++.
T Consensus 126 ~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d-~r~l~~~l~ 191 (214)
T PRK06620 126 NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPRE-YSKIIEILE 191 (214)
T ss_pred ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCC-HHHHHHHHH
Confidence 35 789999853 689999999999999999998888889999999999998764 334444444
No 168
>PRK05642 DNA replication initiation factor; Validated
Probab=99.47 E-value=5e-12 Score=123.06 Aligned_cols=160 Identities=16% Similarity=0.195 Sum_probs=107.6
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERK 337 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~ 337 (502)
..+++|+||+|+|||+|+++++++. +...+.++..++.... ..+.+... ...+|+|||++.+.+...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCChH
Confidence 4679999999999999999999765 4567777776654321 12222222 225899999997743311
Q ss_pred cChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC---CCcHHHHcccc--ceeeecCCCHHHHHHHHHHHHhhcC
Q psy2637 338 EGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ---ELDEAVLRRFS--KRIYVTLPDSKTRKSLLEKLLNKHG 412 (502)
Q Consensus 338 ~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~---~l~~~l~rRf~--~~I~i~~P~~~er~~il~~~l~~~~ 412 (502)
...++...++..... ...++++++..|. ...+.+.+||. .++.++.|+.+++..+++..+...+
T Consensus 115 ---------~~~~Lf~l~n~~~~~--g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 115 ---------WEEALFHLFNRLRDS--GRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred ---------HHHHHHHHHHHHHhc--CCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 122333333332222 2346666655553 33688999984 4678899999999999997787778
Q ss_pred CCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2637 413 NPLSQLELDAVAKLTEGYSGSDLTNLAKDA 442 (502)
Q Consensus 413 ~~l~~~~l~~la~~t~g~s~~dL~~L~~~a 442 (502)
..++++.++.+++..++ +.+.+..++..-
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 212 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLERL 212 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 88999999999999886 444555544433
No 169
>PRK04132 replication factor C small subunit; Provisional
Probab=99.45 E-value=6.9e-12 Score=140.14 Aligned_cols=164 Identities=18% Similarity=0.189 Sum_probs=128.3
Q ss_pred CCCCCcceEEec--CCCCcHHHHHHHHHHHc-----cCceEEeeccchhhhhhhhhHHHHHHHHHHHHhc------CCeE
Q psy2637 257 LRTPSRGLLLFG--PPGNGKTMLARAVATAC-----NATFFSISAASLTSKYVGQGEKLVRALFAMAREL------QPSI 323 (502)
Q Consensus 257 ~~~~~~~vLL~G--ppGtGKT~lAraia~~~-----~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~------~p~i 323 (502)
+..|+-+-++.| |++.||||+|+++|+++ +.+++.+|+++..+. ..++.++..+... +..|
T Consensus 560 ~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KV 633 (846)
T PRK04132 560 LHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKI 633 (846)
T ss_pred eccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEE
Confidence 345667778889 99999999999999997 457999999875331 1334444433222 2369
Q ss_pred EEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHH
Q psy2637 324 IFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSL 403 (502)
Q Consensus 324 LfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~i 403 (502)
++|||+|.|.. ..++.|+..++. ++..+++|.+||.+..+.+++++||. .+.|++|+.++....
T Consensus 634 vIIDEaD~Lt~-----------~AQnALLk~lEe----p~~~~~FILi~N~~~kIi~tIrSRC~-~i~F~~ls~~~i~~~ 697 (846)
T PRK04132 634 IFLDEADALTQ-----------DAQQALRRTMEM----FSSNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKR 697 (846)
T ss_pred EEEECcccCCH-----------HHHHHHHHHhhC----CCCCeEEEEEeCChhhCchHHhhhce-EEeCCCCCHHHHHHH
Confidence 99999999832 234556666653 34568999999999999999999995 899999999999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy2637 404 LEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDA 442 (502)
Q Consensus 404 l~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a 442 (502)
+...+.+.+..+++..+..++..+.|..+..|..|...+
T Consensus 698 L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 698 LRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAA 736 (846)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999998888888999999999999998888887765443
No 170
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.44 E-value=1.2e-11 Score=127.63 Aligned_cols=166 Identities=22% Similarity=0.366 Sum_probs=119.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc-----cCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC-----NATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLS 334 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~ 334 (502)
+..+++|+||+|.|||+|++++++.. +..++.++...+...++.+....-..-|..-. +..+++||+|+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 46789999999999999999999987 34577888777777666655443344555555 457999999998855
Q ss_pred ccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCC---CcHHHHccccc--eeeecCCCHHHHHHHHHHHHh
Q psy2637 335 ERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQE---LDEAVLRRFSK--RIYVTLPDSKTRKSLLEKLLN 409 (502)
Q Consensus 335 ~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~---l~~~l~rRf~~--~I~i~~P~~~er~~il~~~l~ 409 (502)
+. +.+.++...++.+....+ -+|+.+-..|.. +.+.+.+||.+ ++.+.+|+.+.|..++...+.
T Consensus 190 k~---------~~qeefFh~FN~l~~~~k--qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 190 KE---------RTQEEFFHTFNALLENGK--QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred Ch---------hHHHHHHHHHHHHHhcCC--EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 42 123444444444433332 344444445554 55889999865 678889999999999999999
Q ss_pred hcCCCCCHHHHHHHHHhcCCCCHHHHHHHH
Q psy2637 410 KHGNPLSQLELDAVAKLTEGYSGSDLTNLA 439 (502)
Q Consensus 410 ~~~~~l~~~~l~~la~~t~g~s~~dL~~L~ 439 (502)
..+..++++.+..++..... +.++|....
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL 287 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGAL 287 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHH
Confidence 99999999999999988764 344444333
No 171
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.43 E-value=1.4e-11 Score=116.43 Aligned_cols=193 Identities=21% Similarity=0.311 Sum_probs=140.9
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLT 298 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~ 298 (502)
..++.+.+|+|.+.+++.+.+..... .. +.|..+|||+|..|||||+++||+..+. +..+|+|+-.++.
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F------~~--G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQF------AE--GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHH------Hc--CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 45678899999999999987765211 01 3567899999999999999999999988 5668888877664
Q ss_pred hhhhhhhHHHHHHHHHHHHhc-CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCC
Q psy2637 299 SKYVGQGEKLVRALFAMAREL-QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQE 377 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~-~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~ 377 (502)
. +..+++..+.. ..-|||+|++- + ...+. ....|-..++|.....+.+|+|-||+|+...
T Consensus 126 ~---------Lp~l~~~Lr~~~~kFIlFcDDLS-F------e~gd~---~yK~LKs~LeG~ve~rP~NVl~YATSNRRHL 186 (287)
T COG2607 126 T---------LPDLVELLRARPEKFILFCDDLS-F------EEGDD---AYKALKSALEGGVEGRPANVLFYATSNRRHL 186 (287)
T ss_pred h---------HHHHHHHHhcCCceEEEEecCCC-C------CCCch---HHHHHHHHhcCCcccCCCeEEEEEecCCccc
Confidence 3 35566666553 34699999883 1 11111 2223556788888888899999999998764
Q ss_pred CcH----------------------HHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHH----HHHhcCCCC
Q psy2637 378 LDE----------------------AVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDA----VAKLTEGYS 431 (502)
Q Consensus 378 l~~----------------------~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~----la~~t~g~s 431 (502)
++. .+-.||...+.|.+++.++...++..++++++..++++.++. .|..-.|-|
T Consensus 187 l~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RS 266 (287)
T COG2607 187 LPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRS 266 (287)
T ss_pred ccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 431 122399999999999999999999999999999998765543 344445778
Q ss_pred HHHHHHHHHH
Q psy2637 432 GSDLTNLAKD 441 (502)
Q Consensus 432 ~~dL~~L~~~ 441 (502)
|+.-...+++
T Consensus 267 GR~A~QF~~~ 276 (287)
T COG2607 267 GRVAWQFIRD 276 (287)
T ss_pred cHhHHHHHHH
Confidence 8765555543
No 172
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=8.3e-12 Score=128.71 Aligned_cols=222 Identities=17% Similarity=0.269 Sum_probs=144.5
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc-----eEEeeccchhhhhh
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT-----FFSISAASLTSKYV 302 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~-----fv~i~~s~l~~~~~ 302 (502)
+.+.+.+....++...+.... . +..|.+++++|+||||||.+++.+.+++..+ +++|||....+.+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~------~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 17 EELPHREEEINQLASFLAPAL------R--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccccHHHHHHHHHHHHHHh------c--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 448899999999888763221 1 2335569999999999999999999988433 89999987764321
Q ss_pred ---------------hh-hHHHHHHHHHHHHh-cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCc
Q psy2637 303 ---------------GQ-GEKLVRALFAMARE-LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHR 365 (502)
Q Consensus 303 ---------------g~-~~~~~~~lf~~a~~-~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~ 365 (502)
|. .......+++.... ...-||+|||+|.|..... .++..|++... ....+
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~----~~~~~ 156 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPG----ENKVK 156 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcc----cccee
Confidence 11 11222333333333 3456999999999965532 23333433332 22566
Q ss_pred EEEEEEcCCC---CCCcHHHHcccc-ceeeecCCCHHHHHHHHHHHHhh--cCCCCCHHHHHHHHHhcCCCC--HHHHHH
Q psy2637 366 LLVMGATNRP---QELDEAVLRRFS-KRIYVTLPDSKTRKSLLEKLLNK--HGNPLSQLELDAVAKLTEGYS--GSDLTN 437 (502)
Q Consensus 366 v~vIaaTN~~---~~l~~~l~rRf~-~~I~i~~P~~~er~~il~~~l~~--~~~~l~~~~l~~la~~t~g~s--~~dL~~ 437 (502)
+.+|+.+|.. +.+++.+.+++. ..|.|++++.+|..+|+...+.. ....+++..++.+|......+ .+---.
T Consensus 157 v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aid 236 (366)
T COG1474 157 VSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAID 236 (366)
T ss_pred EEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHH
Confidence 8999999986 478888888764 35889999999999999999875 233356666666665443222 222234
Q ss_pred HHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhcCC
Q psy2637 438 LAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIRRS 481 (502)
Q Consensus 438 L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~~s 481 (502)
+++.|...|.++. ...++.++...|...+...
T Consensus 237 ilr~A~eiAe~~~------------~~~v~~~~v~~a~~~~~~~ 268 (366)
T COG1474 237 ILRRAGEIAEREG------------SRKVSEDHVREAQEEIERD 268 (366)
T ss_pred HHHHHHHHHHhhC------------CCCcCHHHHHHHHHHhhHH
Confidence 6677776666554 3556666666665444433
No 173
>PHA02244 ATPase-like protein
Probab=99.40 E-value=5.7e-12 Score=127.95 Aligned_cols=128 Identities=23% Similarity=0.299 Sum_probs=82.2
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhh---hhHHHHHHHHHHHHhcCCeEEEEcCCcchhcc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVG---QGEKLVRALFAMARELQPSIIFIDEVDSVLSE 335 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g---~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~ 335 (502)
..+.+|||+||||||||++|+++|..++.||+.++...-.....| .......+-+-.+. ..+++|+|||++.+.+.
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPE 195 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCHH
Confidence 345789999999999999999999999999999884311111111 11111111222222 24589999999987433
Q ss_pred cccChhHHHHHHHHHHHHHhc-------cCCCCCCCcEEEEEEcCCC-----------CCCcHHHHccccceeeecCCCH
Q psy2637 336 RKEGEHEASRRLKTEFLLEFD-------GLHSNSEHRLLVMGATNRP-----------QELDEAVLRRFSKRIYVTLPDS 397 (502)
Q Consensus 336 ~~~~~~~~~~~~~~~ll~~l~-------g~~~~~~~~v~vIaaTN~~-----------~~l~~~l~rRf~~~I~i~~P~~ 397 (502)
. +..|...++ +.......++++|+|+|.+ ..+++++++||. .|++..|+.
T Consensus 196 v-----------q~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv-~I~~dyp~~ 263 (383)
T PHA02244 196 A-----------LIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA-PIEFDYDEK 263 (383)
T ss_pred H-----------HHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE-EeeCCCCcH
Confidence 1 122222221 1121223579999999973 467899999995 899999984
Q ss_pred HH
Q psy2637 398 KT 399 (502)
Q Consensus 398 ~e 399 (502)
.|
T Consensus 264 ~E 265 (383)
T PHA02244 264 IE 265 (383)
T ss_pred HH
Confidence 33
No 174
>PRK09087 hypothetical protein; Validated
Probab=99.38 E-value=2.5e-11 Score=117.48 Aligned_cols=174 Identities=17% Similarity=0.152 Sum_probs=110.7
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccCh
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGE 340 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~ 340 (502)
.+.++|+||+|+|||+|++++++..+..+ ++...+.. ..+..... ++|+|||++.+.. .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~----~- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGS-----------DAANAAAE---GPVLIEDIDAGGF----D- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcch-----------HHHHhhhc---CeEEEECCCCCCC----C-
Confidence 35599999999999999999998865443 33322221 11222222 5899999997621 1
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC--C-CcHHHHcccc--ceeeecCCCHHHHHHHHHHHHhhcCCCC
Q psy2637 341 HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ--E-LDEAVLRRFS--KRIYVTLPDSKTRKSLLEKLLNKHGNPL 415 (502)
Q Consensus 341 ~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~--~-l~~~l~rRf~--~~I~i~~P~~~er~~il~~~l~~~~~~l 415 (502)
++. +...++..... ...+||+++..|. . ..+.+++|+. .++.++.|+.++|.++++..+...+..+
T Consensus 103 ~~~-------lf~l~n~~~~~--g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETG-------LFHLINSVRQA--GTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHH-------HHHHHHHHHhC--CCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 122 22222222222 2245665555543 2 3578888984 4899999999999999999999988999
Q ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhh
Q psy2637 416 SQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRI 478 (502)
Q Consensus 416 ~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~ 478 (502)
+++.++.|++...+-. +.+..++......+.. ..+.||...+.++++.+
T Consensus 174 ~~ev~~~La~~~~r~~-~~l~~~l~~L~~~~~~-------------~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 174 DPHVVYYLVSRMERSL-FAAQTIVDRLDRLALE-------------RKSRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHH-------------hCCCCCHHHHHHHHHhh
Confidence 9999999999887532 2333222222221111 23568888888777654
No 175
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.38 E-value=5.4e-12 Score=126.81 Aligned_cols=139 Identities=14% Similarity=0.184 Sum_probs=95.7
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh--hhhhhH----------HHHHHHHHHHHhcCCeEEEEcC
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK--YVGQGE----------KLVRALFAMARELQPSIIFIDE 328 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~--~~g~~~----------~~~~~lf~~a~~~~p~iLfLDE 328 (502)
.++|||.||||||||++|+.+|+.++.+++.+++...... ++|... ....+.+..|.. .++++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4789999999999999999999999999999999776543 444311 111233444443 457899999
Q ss_pred CcchhcccccChhHHHHHHHHHHHHH-----hcc--CCCCCCCcEEEEEEcCCCC------------CCcHHHHccccce
Q psy2637 329 VDSVLSERKEGEHEASRRLKTEFLLE-----FDG--LHSNSEHRLLVMGATNRPQ------------ELDEAVLRRFSKR 389 (502)
Q Consensus 329 Id~L~~~~~~~~~~~~~~~~~~ll~~-----l~g--~~~~~~~~v~vIaaTN~~~------------~l~~~l~rRf~~~ 389 (502)
+|...++. ... ++.++.. +.+ ..-.+..++++|||+|..+ .+++++++||..+
T Consensus 143 in~a~p~~----~~~----L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~ 214 (327)
T TIGR01650 143 YDAGRPDV----MFV----IQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIV 214 (327)
T ss_pred hhccCHHH----HHH----HHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeE
Confidence 99874331 111 1122221 111 1111234699999999853 4789999999766
Q ss_pred eeecCCCHHHHHHHHHHHH
Q psy2637 390 IYVTLPDSKTRKSLLEKLL 408 (502)
Q Consensus 390 I~i~~P~~~er~~il~~~l 408 (502)
+.+..|+.++-.+|+....
T Consensus 215 ~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 215 TTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred eeCCCCCHHHHHHHHHhhc
Confidence 7899999999999987654
No 176
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=7e-12 Score=137.54 Aligned_cols=196 Identities=22% Similarity=0.357 Sum_probs=148.3
Q ss_pred HHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc--------
Q psy2637 214 VLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-------- 285 (502)
Q Consensus 214 i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-------- 285 (502)
+..++........++-++|.+..++++.+.+... ...+-+|.|+||+|||.++.-+|...
T Consensus 156 y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~ 223 (786)
T COG0542 156 YTRDLTELAREGKLDPVIGRDEEIRRTIQILSRR------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPES 223 (786)
T ss_pred HhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhcc------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHH
Confidence 3334444445557888999999999998887443 23667889999999999999999976
Q ss_pred --cCceEEeeccchh--hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCC
Q psy2637 286 --NATFFSISAASLT--SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSN 361 (502)
Q Consensus 286 --~~~fv~i~~s~l~--~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 361 (502)
+..++.++.+.+. .+|-|+.+.+++.+++......+.||||||||.+.+....... ....-+.|.-.+.
T Consensus 224 L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~DAaNiLKPaLA----- 296 (786)
T COG0542 224 LKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMDAANLLKPALA----- 296 (786)
T ss_pred HcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccchhhhhHHHHh-----
Confidence 4567788887776 3688999999999999999888899999999999877654221 1112222222222
Q ss_pred CCCcEEEEEEcCCCC-----CCcHHHHccccceeeecCCCHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHhcCCC
Q psy2637 362 SEHRLLVMGATNRPQ-----ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK----HGNPLSQLELDAVAKLTEGY 430 (502)
Q Consensus 362 ~~~~v~vIaaTN~~~-----~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~----~~~~l~~~~l~~la~~t~g~ 430 (502)
...+.+||||...+ .-|+++-|||+ .|.+..|+.++-..|++.+-.+ +++.++|..+...+..+..|
T Consensus 297 -RGeL~~IGATT~~EYRk~iEKD~AL~RRFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 297 -RGELRCIGATTLDEYRKYIEKDAALERRFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred -cCCeEEEEeccHHHHHHHhhhchHHHhcCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 23589999997543 56789999997 8999999999999999877654 66778888888777766543
No 177
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.37 E-value=1e-11 Score=132.80 Aligned_cols=146 Identities=27% Similarity=0.389 Sum_probs=96.7
Q ss_pred CCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-------------------
Q psy2637 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC------------------- 285 (502)
Q Consensus 225 ~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~------------------- 285 (502)
..|.++.|++.+++.+.-.+ ..+.+++|.||||||||++|+.++..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 37899999999988776554 245789999999999999999999643
Q ss_pred ---------cCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc
Q psy2637 286 ---------NATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD 356 (502)
Q Consensus 286 ---------~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~ 356 (502)
..||...+++......+|.......+.+..|.+ ++|||||++.+. ...+..|...|+
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~-----------~~~~~~L~~~LE 320 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFK-----------RSVLDALREPIE 320 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCC-----------HHHHHHHHHHHH
Confidence 134444444433333333222222345555554 899999998773 223444444443
Q ss_pred c---------CCCCCCCcEEEEEEcCCC------C-----------------CCcHHHHccccceeeecCCCHH
Q psy2637 357 G---------LHSNSEHRLLVMGATNRP------Q-----------------ELDEAVLRRFSKRIYVTLPDSK 398 (502)
Q Consensus 357 g---------~~~~~~~~v~vIaaTN~~------~-----------------~l~~~l~rRf~~~I~i~~P~~~ 398 (502)
. .....+.++++|+++|.- . .+..++++||+..+.++.++..
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 2 122234579999999962 1 4788899999988888876544
No 178
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.37 E-value=4.1e-13 Score=126.21 Aligned_cols=121 Identities=30% Similarity=0.475 Sum_probs=68.8
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc-------------------
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN------------------- 286 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~------------------- 286 (502)
+|.+|+||+.+|+++.-+.. .+.++||+||||||||++|+.++..+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--------------GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--------------CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc--------------CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 37899999999999987762 247999999999999999999998662
Q ss_pred ---------CceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc-
Q psy2637 287 ---------ATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD- 356 (502)
Q Consensus 287 ---------~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~- 356 (502)
.||....-+.-....+|......-+.+..|.+ |||||||+..+ ...+++.|...++
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef-----------~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF-----------DRSVLDALRQPLED 132 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS------------HHHHHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc-----------CHHHHHHHHHHHHC
Confidence 11211111111111222211111223334444 89999999766 3445555555554
Q ss_pred --------cCCCCCCCcEEEEEEcCC
Q psy2637 357 --------GLHSNSEHRLLVMGATNR 374 (502)
Q Consensus 357 --------g~~~~~~~~v~vIaaTN~ 374 (502)
+.....+.++.+|+|+|.
T Consensus 133 g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 133 GEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp SBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred CeEEEEECCceEEEecccEEEEEecc
Confidence 222233467899999985
No 179
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.37 E-value=1.4e-11 Score=108.71 Aligned_cols=139 Identities=40% Similarity=0.628 Sum_probs=89.6
Q ss_pred ChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhhhHHH
Q psy2637 232 GQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQGEKL 308 (502)
Q Consensus 232 G~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~~~~~ 308 (502)
|++...+.+...+.. ....+++|+||||||||++++.+++.+ +.+++.+++..............
T Consensus 2 ~~~~~~~~i~~~~~~------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALEL------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 556666777666522 135789999999999999999999998 88899998877655433221111
Q ss_pred ---HHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCC--CCCcEEEEEEcCCCC--CCcHH
Q psy2637 309 ---VRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSN--SEHRLLVMGATNRPQ--ELDEA 381 (502)
Q Consensus 309 ---~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~--~~~~v~vIaaTN~~~--~l~~~ 381 (502)
............+++|+|||++.+... ....++..+...... ...++.+|+++|... .+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~~~-----------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 138 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSLSRG-----------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRA 138 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhhhHH-----------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChh
Confidence 112223334456789999999977211 112233333322211 124588899998876 78888
Q ss_pred HHccccceeeec
Q psy2637 382 VLRRFSKRIYVT 393 (502)
Q Consensus 382 l~rRf~~~I~i~ 393 (502)
+.+||+..+.++
T Consensus 139 ~~~r~~~~i~~~ 150 (151)
T cd00009 139 LYDRLDIRIVIP 150 (151)
T ss_pred HHhhhccEeecC
Confidence 999997555554
No 180
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=3.5e-11 Score=123.56 Aligned_cols=188 Identities=19% Similarity=0.164 Sum_probs=125.7
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC-------ceEE-ee
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA-------TFFS-IS 293 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~-------~fv~-i~ 293 (502)
..|..+.+++|++.+.+.+...+... ..+..+||+||+|+|||++|+.+|+.+.. +... ..
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 46778999999999999999988432 23467999999999999999999998843 1110 01
Q ss_pred c---c---chhhh----h--h-------------hhhHHHHHHHHHHHH----hcCCeEEEEcCCcchhcccccChhHHH
Q psy2637 294 A---A---SLTSK----Y--V-------------GQGEKLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEGEHEAS 344 (502)
Q Consensus 294 ~---s---~l~~~----~--~-------------g~~~~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~~~~ 344 (502)
| . .+... + + ...-..++.+.+... .....|++|||+|.|..
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~---------- 155 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR---------- 155 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH----------
Confidence 1 1 00000 0 0 001122333333222 22346999999998832
Q ss_pred HHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q psy2637 345 RRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVA 424 (502)
Q Consensus 345 ~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la 424 (502)
...+.|+..++. ++.++++|..|+.++.+.+.+++|+. .+.+++|+.++..+++.......+ +++..+..++
T Consensus 156 -~aanaLLk~LEE----pp~~~~fiLit~~~~~llptIrSRc~-~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~ 227 (351)
T PRK09112 156 -NAANAILKTLEE----PPARALFILISHSSGRLLPTIRSRCQ-PISLKPLDDDELKKALSHLGSSQG--SDGEITEALL 227 (351)
T ss_pred -HHHHHHHHHHhc----CCCCceEEEEECChhhccHHHHhhcc-EEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHH
Confidence 234456666653 33446666677888888899999994 999999999999999987433222 5577788888
Q ss_pred HhcCCCCHHHHHHH
Q psy2637 425 KLTEGYSGSDLTNL 438 (502)
Q Consensus 425 ~~t~g~s~~dL~~L 438 (502)
..+.|.....+..+
T Consensus 228 ~~s~G~pr~Al~ll 241 (351)
T PRK09112 228 QRSKGSVRKALLLL 241 (351)
T ss_pred HHcCCCHHHHHHHH
Confidence 88888777666544
No 181
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=3.7e-11 Score=122.16 Aligned_cols=176 Identities=14% Similarity=0.245 Sum_probs=119.7
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC--------ceEEeeccch
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA--------TFFSISAASL 297 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~--------~fv~i~~s~l 297 (502)
+|++++|++.+++.+...+... ..+..+||+||+|+|||++|+++|+.+.+ .+..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~-----------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN-----------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC-----------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 5889999999999999887322 23467799999999999999999997622 22233221
Q ss_pred hhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcC
Q psy2637 298 TSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATN 373 (502)
Q Consensus 298 ~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN 373 (502)
.+.. ..-..++.+.+.+.. ....|++||++|.+.. ...+.|+..++ .++..+++|.+|+
T Consensus 69 ~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-----------~a~naLLK~LE----epp~~t~~il~~~ 131 (313)
T PRK05564 69 NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-----------QAQNAFLKTIE----EPPKGVFIILLCE 131 (313)
T ss_pred cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-----------HHHHHHHHHhc----CCCCCeEEEEEeC
Confidence 1111 111224444443322 2346999999988722 23456666665 3445577777778
Q ss_pred CCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHH
Q psy2637 374 RPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLT 436 (502)
Q Consensus 374 ~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~ 436 (502)
.++.+.+.+++|+. .+.|..|+.++....+...+. .+++..++.++..+.|-.+..+.
T Consensus 132 ~~~~ll~TI~SRc~-~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 132 NLEQILDTIKSRCQ-IYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred ChHhCcHHHHhhce-eeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 88999999999995 899999999998777765432 35566677777777775554443
No 182
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.8e-11 Score=118.34 Aligned_cols=210 Identities=23% Similarity=0.349 Sum_probs=138.6
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCC--CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh-hhh---
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLR--TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS-KYV--- 302 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~--~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~-~~~--- 302 (502)
.|+||+++++.+.-++....++..+-..++ ..|+++|..||+|+|||.+||.+|+-.+.||+.+-+..+.. .|+
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrD 95 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRD 95 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeeccccccc
Confidence 489999999999887765555444444443 56799999999999999999999999999998876654430 000
Q ss_pred --------------------------------------------------------------------------------
Q psy2637 303 -------------------------------------------------------------------------------- 302 (502)
Q Consensus 303 -------------------------------------------------------------------------------- 302 (502)
T Consensus 96 VesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~eIei 175 (444)
T COG1220 96 VESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDKEIEI 175 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHcCCCCccEEEE
Confidence
Q ss_pred ----------------h--hhHHHHHHHHHHH---------------------------------------HhcCCeEEE
Q psy2637 303 ----------------G--QGEKLVRALFAMA---------------------------------------RELQPSIIF 325 (502)
Q Consensus 303 ----------------g--~~~~~~~~lf~~a---------------------------------------~~~~p~iLf 325 (502)
| .....++.+|..+ ...+-||+|
T Consensus 176 ev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~GIvF 255 (444)
T COG1220 176 EVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQNGIVF 255 (444)
T ss_pred EEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEE
Confidence 0 0001111222111 011346999
Q ss_pred EcCCcchhcccccCh-hHHHHHHHHHHHHHhccCCCC------CCCcEEEEEEc----CCCCCCcHHHHccccceeeecC
Q psy2637 326 IDEVDSVLSERKEGE-HEASRRLKTEFLLEFDGLHSN------SEHRLLVMGAT----NRPQELDEAVLRRFSKRIYVTL 394 (502)
Q Consensus 326 LDEId~L~~~~~~~~-~~~~~~~~~~ll~~l~g~~~~------~~~~v~vIaaT----N~~~~l~~~l~rRf~~~I~i~~ 394 (502)
|||||.++.....+. .-.-..++..+|-..+|..-. ..+.+++||+. ..|++|-|.+--||+..+++..
T Consensus 256 IDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRVEL~~ 335 (444)
T COG1220 256 IDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRVELDA 335 (444)
T ss_pred EehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEEEccc
Confidence 999999987764333 223345777888877764221 23568899886 4678888999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCHHHHHHHHH--hcC----CCCHHHHHHHHHHHHhhh
Q psy2637 395 PDSKTRKSLLEKLLNKHGNPLSQLELDAVAK--LTE----GYSGSDLTNLAKDAALGP 446 (502)
Q Consensus 395 P~~~er~~il~~~l~~~~~~l~~~~l~~la~--~t~----g~s~~dL~~L~~~a~~~a 446 (502)
.+.++-..|+.. ....-+.++.. .++ .|+.+.|..+...||.-|
T Consensus 336 Lt~~Df~rILte--------p~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN 385 (444)
T COG1220 336 LTKEDFERILTE--------PKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVN 385 (444)
T ss_pred CCHHHHHHHHcC--------cchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhc
Confidence 999988887731 11111111111 222 367788888888887655
No 183
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.34 E-value=1.4e-12 Score=116.52 Aligned_cols=128 Identities=23% Similarity=0.412 Sum_probs=85.6
Q ss_pred cChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc---CceEEeeccchhhhhhhhhHH
Q psy2637 231 AGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN---ATFFSISAASLTSKYVGQGEK 307 (502)
Q Consensus 231 iG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~---~~fv~i~~s~l~~~~~g~~~~ 307 (502)
+|.+..++++.+.+ ..++....+|||+|++||||+++|++||.... .+|+.++|....
T Consensus 1 vG~S~~~~~l~~~l----------~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQL----------ERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHH----------HHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHH----------HHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 47788888888877 45556678999999999999999999999884 578888887654
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC-C------CCcH
Q psy2637 308 LVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP-Q------ELDE 380 (502)
Q Consensus 308 ~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~-~------~l~~ 380 (502)
..+++.+ .+++|||+|+|.|... .+..++..+.... ..++++|+++..+ . .+.+
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~-----------~Q~~L~~~l~~~~---~~~~RlI~ss~~~l~~l~~~~~~~~ 122 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPE-----------AQRRLLDLLKRQE---RSNVRLIASSSQDLEELVEEGRFSP 122 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HH-----------HHHHHHHHHHHCT---TTTSEEEEEECC-CCCHHHHSTHHH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHH-----------HHHHHHHHHHhcC---CCCeEEEEEeCCCHHHHhhccchhH
Confidence 2344444 4589999999998432 3334444444321 3456888887653 2 4667
Q ss_pred HHHccccceeeecCCCH
Q psy2637 381 AVLRRFSKRIYVTLPDS 397 (502)
Q Consensus 381 ~l~rRf~~~I~i~~P~~ 397 (502)
.+..|+. .+.+..|++
T Consensus 123 ~L~~~l~-~~~i~lPpL 138 (138)
T PF14532_consen 123 DLYYRLS-QLEIHLPPL 138 (138)
T ss_dssp HHHHHCS-TCEEEE---
T ss_pred HHHHHhC-CCEEeCCCC
Confidence 7777886 667777763
No 184
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.34 E-value=1.2e-11 Score=135.22 Aligned_cols=203 Identities=17% Similarity=0.243 Sum_probs=124.4
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc--CceEEeeccchhhhhhhhhH--HHH--------HHHHHHHHhcCCeEEEEcC
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN--ATFFSISAASLTSKYVGQGE--KLV--------RALFAMARELQPSIIFIDE 328 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~--~~fv~i~~s~l~~~~~g~~~--~~~--------~~lf~~a~~~~p~iLfLDE 328 (502)
-.+|||.|+||||||++|+++|+.++ .||+.+.+........|... ..+ .+++..+ ..++|||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccc
Confidence 46899999999999999999999885 46998886544444444321 000 1122222 237999999
Q ss_pred CcchhcccccChhHHHHHHHHHHHHHhc---------cCCCCCCCcEEEEEEcCCCC---CCcHHHHccccceeeecC-C
Q psy2637 329 VDSVLSERKEGEHEASRRLKTEFLLEFD---------GLHSNSEHRLLVMGATNRPQ---ELDEAVLRRFSKRIYVTL-P 395 (502)
Q Consensus 329 Id~L~~~~~~~~~~~~~~~~~~ll~~l~---------g~~~~~~~~v~vIaaTN~~~---~l~~~l~rRf~~~I~i~~-P 395 (502)
|+.+.+ ..+..|+..|+ |.....+.+++||+|+|..+ .+.+.++.||...+.+.. |
T Consensus 93 i~rl~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~ 161 (589)
T TIGR02031 93 ANLLDD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVA 161 (589)
T ss_pred hhhCCH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCC
Confidence 998843 24445555553 33333345789999999764 799999999987665554 6
Q ss_pred CHHHHHHHHHHHHhhcCCCC------CHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhhHHhhhhhhh-----h-hhccc
Q psy2637 396 DSKTRKSLLEKLLNKHGNPL------SQLELDAVAKLTE--GYSGSDLTNLAKDAALGPIRELNADQV-----I-KVDLK 461 (502)
Q Consensus 396 ~~~er~~il~~~l~~~~~~l------~~~~l~~la~~t~--g~s~~dL~~L~~~a~~~airel~~~~~-----~-~v~~~ 461 (502)
+.++|.+|++.....+.... ....+...-+... -.+.+.+..++..+....+...+..+. + ...+.
T Consensus 162 ~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~ 241 (589)
T TIGR02031 162 SQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALH 241 (589)
T ss_pred CHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHh
Confidence 88889999988763321100 0111212212222 245566666666665444432222211 1 12345
Q ss_pred CCCcccHHHHHHHHHh
Q psy2637 462 SVRNISYRDFLESLKR 477 (502)
Q Consensus 462 ~~~~It~~d~~~al~~ 477 (502)
....|+.+|+..++.-
T Consensus 242 gr~~V~~~Dv~~a~~l 257 (589)
T TIGR02031 242 GRTEVTEEDLKLAVEL 257 (589)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 5678999999988763
No 185
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.34 E-value=5.1e-11 Score=120.03 Aligned_cols=91 Identities=22% Similarity=0.268 Sum_probs=57.3
Q ss_pred CeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCC------------CCCCcHHHHccccc
Q psy2637 321 PSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR------------PQELDEAVLRRFSK 388 (502)
Q Consensus 321 p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~------------~~~l~~~l~rRf~~ 388 (502)
||||||||++.|.- .....|-+.++. .-.+ +||.|||+ |..++..+++|+ .
T Consensus 279 pGVLFIDEvHmLDi-----------EcFsfLnralEs----~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLDRl-l 341 (398)
T PF06068_consen 279 PGVLFIDEVHMLDI-----------ECFSFLNRALES----ELSP-IIILATNRGITKIRGTDIISPHGIPLDLLDRL-L 341 (398)
T ss_dssp E-EEEEESGGGSBH-----------HHHHHHHHHHTS----TT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-E
T ss_pred cceEEecchhhccH-----------HHHHHHHHHhcC----CCCc-EEEEecCceeeeccCccCcCCCCCCcchHhhc-E
Confidence 78999999998721 122223333432 1223 55667774 347888999999 4
Q ss_pred eeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcC
Q psy2637 389 RIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTE 428 (502)
Q Consensus 389 ~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~ 428 (502)
.|...+++.+|..+|+...++..+..+++..++.|++...
T Consensus 342 II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~ 381 (398)
T PF06068_consen 342 IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGV 381 (398)
T ss_dssp EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhh
Confidence 8999999999999999999999999999988888876654
No 186
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=2e-10 Score=118.58 Aligned_cols=186 Identities=20% Similarity=0.161 Sum_probs=123.2
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCce----E-------
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATF----F------- 290 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~f----v------- 290 (502)
..|..+++|+|++.+++.+.+.+... ..+..+||+||+|+||+++|.++|+.+...- -
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 56778999999999999999988432 2356799999999999999999999872110 0
Q ss_pred ----Eeeccc---h-----hhh-hh-----h--------hhHHHHHHHHHHHH----hcCCeEEEEcCCcchhcccccCh
Q psy2637 291 ----SISAAS---L-----TSK-YV-----G--------QGEKLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEGE 340 (502)
Q Consensus 291 ----~i~~s~---l-----~~~-~~-----g--------~~~~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~ 340 (502)
.-.|.. + ++- ++ + ..-..++.+.+.+. ...+.|++|||+|.+.
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 000100 0 000 00 0 01122344433332 2356799999999872
Q ss_pred hHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHH
Q psy2637 341 HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLEL 420 (502)
Q Consensus 341 ~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l 420 (502)
....+.|+..++. ++..+++|.+|+.++.+.+.+++|+. .+.|++|+.++..+++.... ....+..+
T Consensus 155 ----~~aanaLLK~LEe----pp~~~~~IL~t~~~~~llpti~SRc~-~i~l~~l~~~~i~~~L~~~~----~~~~~~~~ 221 (365)
T PRK07471 155 ----ANAANALLKVLEE----PPARSLFLLVSHAPARLLPTIRSRCR-KLRLRPLAPEDVIDALAAAG----PDLPDDPR 221 (365)
T ss_pred ----HHHHHHHHHHHhc----CCCCeEEEEEECCchhchHHhhccce-EEECCCCCHHHHHHHHHHhc----ccCCHHHH
Confidence 2344556666652 33456777789888889999999995 89999999999988886643 22334444
Q ss_pred HHHHHhcCCCCHHHHHHH
Q psy2637 421 DAVAKLTEGYSGSDLTNL 438 (502)
Q Consensus 421 ~~la~~t~g~s~~dL~~L 438 (502)
..++..+.|-.+..+..+
T Consensus 222 ~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 222 AALAALAEGSVGRALRLA 239 (365)
T ss_pred HHHHHHcCCCHHHHHHHh
Confidence 677888887666555544
No 187
>KOG1969|consensus
Probab=99.32 E-value=4.1e-11 Score=128.14 Aligned_cols=210 Identities=20% Similarity=0.255 Sum_probs=135.7
Q ss_pred HHhcCCCCCCcccccChHHHHHHHHHHHhCcC-----------------CChhhhh-cC---C-CCCcceEEecCCCCcH
Q psy2637 217 EILEGGSPVQWQDIAGQEVAKQALHEMVILPS-----------------LRPELFT-GL---R-TPSRGLLLFGPPGNGK 274 (502)
Q Consensus 217 ~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~-----------------~~~~l~~-~~---~-~~~~~vLL~GppGtGK 274 (502)
.+++.+.|..|.|+.|.+.+-+.+..|+.... ...+.+. .. . ++.+-+||+||||-||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 46677888899999999888888877763221 0011111 11 1 2345678999999999
Q ss_pred HHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHH----HhcCCeEEEEcCCcchhcccccChhHHHHHHHHH
Q psy2637 275 TMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMA----RELQPSIIFIDEVDSVLSERKEGEHEASRRLKTE 350 (502)
Q Consensus 275 T~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a----~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ 350 (502)
||||+.||+++|..++.||+++-.+. ......+......- ...+|..|++||||--. .+.-+++..
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--------~~~Vdvils 409 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--------RAAVDVILS 409 (877)
T ss_pred hHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc--------HHHHHHHHH
Confidence 99999999999999999999876542 11122222222211 12578899999998442 122222222
Q ss_pred HHHH----hccCCCCC----------CCcEEEEEEcCCCCCCcHHHH--ccccceeeecCCCHHHHHHHHHHHHhhcCCC
Q psy2637 351 FLLE----FDGLHSNS----------EHRLLVMGATNRPQELDEAVL--RRFSKRIYVTLPDSKTRKSLLEKLLNKHGNP 414 (502)
Q Consensus 351 ll~~----l~g~~~~~----------~~~v~vIaaTN~~~~l~~~l~--rRf~~~I~i~~P~~~er~~il~~~l~~~~~~ 414 (502)
++.. ..|-.... .-.--|||.||... .|+++ |-+.+++.|.+|+.....+-++..+...+..
T Consensus 410 lv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr 487 (877)
T KOG1969|consen 410 LVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMR 487 (877)
T ss_pred HHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCC
Confidence 3221 11111100 01124788899744 34443 4677899999999999999999999998888
Q ss_pred CCHHHHHHHHHhcCCCCHHHHHHH
Q psy2637 415 LSQLELDAVAKLTEGYSGSDLTNL 438 (502)
Q Consensus 415 l~~~~l~~la~~t~g~s~~dL~~L 438 (502)
.+...+..|+..+++....-|+.|
T Consensus 488 ~d~~aL~~L~el~~~DIRsCINtL 511 (877)
T KOG1969|consen 488 ADSKALNALCELTQNDIRSCINTL 511 (877)
T ss_pred CCHHHHHHHHHHhcchHHHHHHHH
Confidence 888888888888876544444444
No 188
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.32 E-value=2.6e-11 Score=130.95 Aligned_cols=165 Identities=22% Similarity=0.309 Sum_probs=101.3
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcC-CCCCcceEEecCCCCcHHHHHHHHHHHccC-ceEE---eeccchhhhh--
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGL-RTPSRGLLLFGPPGNGKTMLARAVATACNA-TFFS---ISAASLTSKY-- 301 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~-~~~~~~vLL~GppGtGKT~lAraia~~~~~-~fv~---i~~s~l~~~~-- 301 (502)
.|.|++.+++.+.-.+..... +....+. -....+|||+|+||||||++|+++|+.+.. .|+. .++..+....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 589999998888766533211 0000111 123458999999999999999999998753 3332 1333332211
Q ss_pred ---hhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc---------cCCCCCCCcEEEE
Q psy2637 302 ---VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD---------GLHSNSEHRLLVM 369 (502)
Q Consensus 302 ---~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~---------g~~~~~~~~v~vI 369 (502)
.|... ...+.+..| ..++++|||+|.+.+. .+..++..|+ |.....+.++.||
T Consensus 283 ~~~~g~~~-~~~G~l~~A---~~Gil~iDEi~~l~~~-----------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~vi 347 (509)
T smart00350 283 DPETREFT-LEGGALVLA---DNGVCCIDEFDKMDDS-----------DRTAIHEAMEQQTISIAKAGITTTLNARCSVL 347 (509)
T ss_pred ccCcceEE-ecCccEEec---CCCEEEEechhhCCHH-----------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence 11100 001122223 3389999999988432 2333444443 3333344678999
Q ss_pred EEcCCCC-------------CCcHHHHcccccee-eecCCCHHHHHHHHHHHHh
Q psy2637 370 GATNRPQ-------------ELDEAVLRRFSKRI-YVTLPDSKTRKSLLEKLLN 409 (502)
Q Consensus 370 aaTN~~~-------------~l~~~l~rRf~~~I-~i~~P~~~er~~il~~~l~ 409 (502)
||+|+.+ .+++++++||+..+ ....|+.+...++..+.+.
T Consensus 348 Aa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 348 AAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 9999752 68999999998654 4467888888898887654
No 189
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.29 E-value=5.4e-12 Score=122.07 Aligned_cols=201 Identities=23% Similarity=0.321 Sum_probs=130.1
Q ss_pred CCcceEEecCCCCcHHHHHHHHHH------HccCceEEeeccchhhh-------------hhhhhHHHHHHHHHHHHhcC
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVAT------ACNATFFSISAASLTSK-------------YVGQGEKLVRALFAMARELQ 320 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~------~~~~~fv~i~~s~l~~~-------------~~g~~~~~~~~lf~~a~~~~ 320 (502)
...++||.||+|.||+.+|+.|.. .+..+|+++||+.+.+. |.|.-+. ..+++..+.+
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~-r~gllrsadg-- 283 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARES-REGLLRSADG-- 283 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhh-hhhhhccCCC--
Confidence 347899999999999999999875 34789999999988653 2222222 1344444444
Q ss_pred CeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC--C-----CCcHHHHccccceeeec
Q psy2637 321 PSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP--Q-----ELDEAVLRRFSKRIYVT 393 (502)
Q Consensus 321 p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~--~-----~l~~~l~rRf~~~I~i~ 393 (502)
+.+|||||..|..+ .+.++.....+--..--|.......++.+|+-|.+. + ...+.++-|++ .+.|.
T Consensus 284 -gmlfldeigelgad----eqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arin-lwtf~ 357 (531)
T COG4650 284 -GMLFLDEIGELGAD----EQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARIN-LWTFT 357 (531)
T ss_pred -ceEehHhhhhcCcc----HHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhh-eeeee
Confidence 89999999988432 333333222221111123333334567777766542 2 34455555886 89999
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcC---CCCHHHHHHHH------HHHHhhhHHhhhhhhhhhhcccCCC
Q psy2637 394 LPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTE---GYSGSDLTNLA------KDAALGPIRELNADQVIKVDLKSVR 464 (502)
Q Consensus 394 ~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~---g~s~~dL~~L~------~~a~~~airel~~~~~~~v~~~~~~ 464 (502)
+|.+.+|.+.++- --|..++..+..+. .|.-+.-+.-. +..|.+|.|++...+.+...+.+..
T Consensus 358 lpgl~qr~ediep--------nldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~g 429 (531)
T COG4650 358 LPGLRQRQEDIEP--------NLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADSG 429 (531)
T ss_pred ccccccCccccCC--------CccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcCC
Confidence 9999999998842 22445566665543 23333333222 3578999999999888888888888
Q ss_pred cccHHHHHHHHHh
Q psy2637 465 NISYRDFLESLKR 477 (502)
Q Consensus 465 ~It~~d~~~al~~ 477 (502)
.|+.+-+.+.+..
T Consensus 430 rit~~~ve~ei~r 442 (531)
T COG4650 430 RITLDVVEDEINR 442 (531)
T ss_pred ceeHHHHHHHHHH
Confidence 8988777666553
No 190
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.29 E-value=7.4e-10 Score=109.73 Aligned_cols=194 Identities=18% Similarity=0.251 Sum_probs=120.5
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc-CceEE---eecc----chhhh---hhh-----hh-HHHHHHH----HHHHHhc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN-ATFFS---ISAA----SLTSK---YVG-----QG-EKLVRAL----FAMAREL 319 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~-~~fv~---i~~s----~l~~~---~~g-----~~-~~~~~~l----f~~a~~~ 319 (502)
+..++|+||+|+|||++++.+++.+. ..+.. +++. ++... ..| .. ......+ .......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 34688999999999999999999875 22221 1111 11100 011 10 0111111 1223344
Q ss_pred CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCC--CCCC----cHHHHccccceeeec
Q psy2637 320 QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR--PQEL----DEAVLRRFSKRIYVT 393 (502)
Q Consensus 320 ~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~--~~~l----~~~l~rRf~~~I~i~ 393 (502)
.+.+|+|||++.+... . .. .+..+..........+.|+.+... .+.+ ...+.+|+...+.++
T Consensus 123 ~~~vliiDe~~~l~~~-------~----~~-~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 123 KRALLVVDEAQNLTPE-------L----LE-ELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CCeEEEEECcccCCHH-------H----HH-HHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 5679999999987321 1 11 112221111112222344444332 1111 134666877788999
Q ss_pred CCCHHHHHHHHHHHHhhcC----CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHH
Q psy2637 394 LPDSKTRKSLLEKLLNKHG----NPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYR 469 (502)
Q Consensus 394 ~P~~~er~~il~~~l~~~~----~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~ 469 (502)
+.+.++..+++...+...+ ..++++.++.+.+.+.|++. .|..++..++..+..+. ...|+.+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~~------------~~~i~~~ 257 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLEE------------KREIGGE 257 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHcC------------CCCCCHH
Confidence 9999999999999887654 35788999999999999865 59999999998877653 3579999
Q ss_pred HHHHHHHhhc
Q psy2637 470 DFLESLKRIR 479 (502)
Q Consensus 470 d~~~al~~~~ 479 (502)
++..++..+.
T Consensus 258 ~v~~~~~~~~ 267 (269)
T TIGR03015 258 EVREVIAEID 267 (269)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 191
>KOG2035|consensus
Probab=99.27 E-value=2.1e-10 Score=110.51 Aligned_cols=190 Identities=18% Similarity=0.252 Sum_probs=136.5
Q ss_pred hcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC---ceEEeec-
Q psy2637 219 LEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA---TFFSISA- 294 (502)
Q Consensus 219 ~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~---~fv~i~~- 294 (502)
++.+.|.+++.+.+.++....++..... ..-+++++|||+|+||-|.+.++-+++.. +=..+..
T Consensus 4 vdkyrpksl~~l~~~~e~~~~Lksl~~~------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~ 71 (351)
T KOG2035|consen 4 VDKYRPKSLDELIYHEELANLLKSLSST------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETR 71 (351)
T ss_pred hhhcCcchhhhcccHHHHHHHHHHhccc------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeE
Confidence 4567788899999999988888877621 12378999999999999999999998721 1111110
Q ss_pred ------------cchhhh--------hhhh-hHHHHHHHHHHHHhcCC---------eEEEEcCCcchhcccccChhHHH
Q psy2637 295 ------------ASLTSK--------YVGQ-GEKLVRALFAMARELQP---------SIIFIDEVDSVLSERKEGEHEAS 344 (502)
Q Consensus 295 ------------s~l~~~--------~~g~-~~~~~~~lf~~a~~~~p---------~iLfLDEId~L~~~~~~~~~~~~ 344 (502)
+.+.+. -.|. ..-.++.++....+.+| .+++|.|+|.|..+
T Consensus 72 t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~d--------- 142 (351)
T KOG2035|consen 72 TFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRD--------- 142 (351)
T ss_pred EEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHH---------
Confidence 011111 1122 23335666665554332 59999999988432
Q ss_pred HHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q psy2637 345 RRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVA 424 (502)
Q Consensus 345 ~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la 424 (502)
.+..|-+.|+... .++++|..+|....+-+++++|+ ..+.++.|+.++...++...+.+.+..+.++.+.+++
T Consensus 143 --AQ~aLRRTMEkYs----~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa 215 (351)
T KOG2035|consen 143 --AQHALRRTMEKYS----SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIA 215 (351)
T ss_pred --HHHHHHHHHHHHh----cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHH
Confidence 2333444444332 35899999999999999999998 4899999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHH
Q psy2637 425 KLTEGYSGSDLT 436 (502)
Q Consensus 425 ~~t~g~s~~dL~ 436 (502)
+.++|--.++|-
T Consensus 216 ~kS~~nLRrAll 227 (351)
T KOG2035|consen 216 EKSNRNLRRALL 227 (351)
T ss_pred HHhcccHHHHHH
Confidence 999886666654
No 192
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.27 E-value=6.1e-11 Score=120.50 Aligned_cols=148 Identities=22% Similarity=0.281 Sum_probs=101.4
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc----------------------
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN---------------------- 286 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~---------------------- 286 (502)
+++|.+.+...+..++... +..+..+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 5677788888888777321 22234599999999999999999999885
Q ss_pred --CceEEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCC
Q psy2637 287 --ATFFSISAASLTSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHS 360 (502)
Q Consensus 287 --~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 360 (502)
..++.++.++....- .....++.+.+.... .+..|++|||+|.|.. ...+.++..++
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~lE---- 134 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTLE---- 134 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhc----
Confidence 456777776654421 122223333333322 2346999999998843 34455665554
Q ss_pred CCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHH
Q psy2637 361 NSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLL 404 (502)
Q Consensus 361 ~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il 404 (502)
.++.+.++|.+||.++.+-+.+.+|+. .+.|.+|+........
T Consensus 135 ep~~~~~~il~~n~~~~il~tI~SRc~-~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 135 EPPKNTRFILITNDPSKILPTIRSRCQ-RIRFKPPSRLEAIAWL 177 (325)
T ss_pred cCCCCeEEEEEcCChhhccchhhhcce-eeecCCchHHHHHHHh
Confidence 345678999999999999999999995 8889886555554443
No 193
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.25 E-value=1.5e-10 Score=108.86 Aligned_cols=144 Identities=18% Similarity=0.255 Sum_probs=98.2
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCc------------------------eEEeeccchhhhhhhhhHHHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNAT------------------------FFSISAASLTSKYVGQGEKLVRALFAMA 316 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~------------------------fv~i~~s~l~~~~~g~~~~~~~~lf~~a 316 (502)
+..+||+||+|+|||++|+.+++.+... +..+.... . ......++.+.+.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHHH
Confidence 5679999999999999999999987421 11111100 0 01122344445444
Q ss_pred Hh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeee
Q psy2637 317 RE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYV 392 (502)
Q Consensus 317 ~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i 392 (502)
.. ....+++|||+|.+... .++.|+..++. ++....+|.+|+.+..+.+++.+|+. ++.+
T Consensus 89 ~~~~~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~----~~~~~~~il~~~~~~~l~~~i~sr~~-~~~~ 152 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMNEA-----------AANALLKTLEE----PPPNTLFILITPSPEKLLPTIRSRCQ-VLPF 152 (188)
T ss_pred ccCcccCCeEEEEEechhhhCHH-----------HHHHHHHHhcC----CCCCeEEEEEECChHhChHHHHhhcE-EeeC
Confidence 43 23469999999988322 23456666643 23456777778777899999999995 8999
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCC
Q psy2637 393 TLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYS 431 (502)
Q Consensus 393 ~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s 431 (502)
.+|+.++..+++... + +++..++.++..+.|..
T Consensus 153 ~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~ 185 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSP 185 (188)
T ss_pred CCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCc
Confidence 999999998888665 3 56777888888887643
No 194
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.25 E-value=1.9e-11 Score=113.16 Aligned_cols=114 Identities=21% Similarity=0.333 Sum_probs=76.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccC----ceEEeeccchhhhhhhhhHHHHHHHHHHH----HhcCCeEEEEcCCcc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNA----TFFSISAASLTSKYVGQGEKLVRALFAMA----RELQPSIIFIDEVDS 331 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~----~fv~i~~s~l~~~~~g~~~~~~~~lf~~a----~~~~p~iLfLDEId~ 331 (502)
|-..+||.||+|+|||.+|+++|+.+.. +++.+||+.+... +.....+..+...+ .....+||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3467999999999999999999999985 9999999998761 11111111111111 111125999999999
Q ss_pred hhcccccChhHHHHHHHHHHHHHhccCCC-------CCCCcEEEEEEcCCC
Q psy2637 332 VLSERKEGEHEASRRLKTEFLLEFDGLHS-------NSEHRLLVMGATNRP 375 (502)
Q Consensus 332 L~~~~~~~~~~~~~~~~~~ll~~l~g~~~-------~~~~~v~vIaaTN~~ 375 (502)
+.+....+.......+++.|+..+++..- -.-.++++|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 98764444445556788888888864211 112578999999864
No 195
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=8.4e-11 Score=115.16 Aligned_cols=128 Identities=29% Similarity=0.450 Sum_probs=87.6
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhh-----hcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh-hhh
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELF-----TGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS-KYV 302 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~-----~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~-~~~ 302 (502)
.++||+.+++.+.-++..- +..+. ..+.-...++|+.||+|+|||+||+.+|+.++.||-.-++..+.. .|+
T Consensus 62 YVIGQe~AKKvLsVAVYNH--YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYV 139 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNH--YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYV 139 (408)
T ss_pred heecchhhhceeeeeehhH--HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcccc
Confidence 4889999988775443211 00000 112234578999999999999999999999999999999988875 577
Q ss_pred hhhH-HHHHHHHHHHH----hcCCeEEEEcCCcchhcccccC---hhHHHHHHHHHHHHHhccC
Q psy2637 303 GQGE-KLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEG---EHEASRRLKTEFLLEFDGL 358 (502)
Q Consensus 303 g~~~-~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~---~~~~~~~~~~~ll~~l~g~ 358 (502)
|+.- ..+..++..|. ....|||||||||.+.....+. ..-....+++.||..++|.
T Consensus 140 GEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 140 GEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred chhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 7653 33444443332 1244899999999997654321 2233456788888888764
No 196
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.24 E-value=2.9e-11 Score=123.79 Aligned_cols=154 Identities=27% Similarity=0.419 Sum_probs=101.3
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh--hhhhhhH
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS--KYVGQGE 306 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~--~~~g~~~ 306 (502)
.++|.+.++..+...+. ...++||.||||||||++|+.+|+.++.+|+.+.|..... ...|...
T Consensus 25 ~~~g~~~~~~~~l~a~~--------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALL--------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHH--------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 37788888777766652 3588999999999999999999999999999999975432 2222211
Q ss_pred HHH----HHHHHHHHhc-CC---eEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc-------cCC-CCCCCcEEEEE
Q psy2637 307 KLV----RALFAMAREL-QP---SIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD-------GLH-SNSEHRLLVMG 370 (502)
Q Consensus 307 ~~~----~~lf~~a~~~-~p---~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~-------g~~-~~~~~~v~vIa 370 (502)
-.. ...+....+- -. +++++|||+...+. +++.++..|+ +.. ...+..+++|+
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~-----------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE-----------VQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccCCHH-----------HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 110 0001000000 00 49999999877432 4444454443 333 33446689999
Q ss_pred EcCC-----CCCCcHHHHccccceeeecCC-CHHHHHHHHHHH
Q psy2637 371 ATNR-----PQELDEAVLRRFSKRIYVTLP-DSKTRKSLLEKL 407 (502)
Q Consensus 371 aTN~-----~~~l~~~l~rRf~~~I~i~~P-~~~er~~il~~~ 407 (502)
|+|. ...+++++++||...+.++.| +..+...++...
T Consensus 160 T~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 160 TQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred ccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhC
Confidence 9994 357899999999778999999 555555554433
No 197
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=2.8e-10 Score=115.36 Aligned_cols=182 Identities=14% Similarity=0.245 Sum_probs=121.2
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc-----------------
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT----------------- 288 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~----------------- 288 (502)
.|++|+|++.+++.+...+... .-+...||+||+|+||+++|.++|+.+...
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 5789999999999999998432 235789999999999999999999986221
Q ss_pred -eEEeeccchh-hh-----h---hh--------hhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHH
Q psy2637 289 -FFSISAASLT-SK-----Y---VG--------QGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRR 346 (502)
Q Consensus 289 -fv~i~~s~l~-~~-----~---~g--------~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~ 346 (502)
++.+.+.... +. + .| ..-..++.+.+.+.. ....|++||++|.|. ..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~-----------~~ 139 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN-----------EA 139 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------HH
Confidence 1111110000 00 0 00 001223444444332 234699999999882 22
Q ss_pred HHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Q psy2637 347 LKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKL 426 (502)
Q Consensus 347 ~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~ 426 (502)
..+.|+..++. ++ +.++|..|+.++.+.+.+++|+. .+.|++|+.++..+.+....... ..+.+...++..
T Consensus 140 aaNaLLK~LEE----Pp-~~~fILi~~~~~~Ll~TI~SRcq-~i~f~~l~~~~~~~~L~~~~~~~---~~~~~~~~l~~~ 210 (314)
T PRK07399 140 AANALLKTLEE----PG-NGTLILIAPSPESLLPTIVSRCQ-IIPFYRLSDEQLEQVLKRLGDEE---ILNINFPELLAL 210 (314)
T ss_pred HHHHHHHHHhC----CC-CCeEEEEECChHhCcHHHHhhce-EEecCCCCHHHHHHHHHHhhccc---cchhHHHHHHHH
Confidence 34567776653 33 45677788888999999999995 89999999999999888654321 112235677888
Q ss_pred cCCCCHHHHHHH
Q psy2637 427 TEGYSGSDLTNL 438 (502)
Q Consensus 427 t~g~s~~dL~~L 438 (502)
+.|-.+..+..+
T Consensus 211 a~Gs~~~al~~l 222 (314)
T PRK07399 211 AQGSPGAAIANI 222 (314)
T ss_pred cCCCHHHHHHHH
Confidence 888777666544
No 198
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.21 E-value=6.8e-11 Score=129.70 Aligned_cols=51 Identities=33% Similarity=0.476 Sum_probs=42.7
Q ss_pred CCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC
Q psy2637 223 SPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA 287 (502)
Q Consensus 223 ~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~ 287 (502)
|..-+++++|++.+++.+..++.. +.+++|+||||||||++++++++.++.
T Consensus 13 ~~~~~~~viG~~~a~~~l~~a~~~--------------~~~~ll~G~pG~GKT~la~~la~~l~~ 63 (608)
T TIGR00764 13 PERLIDQVIGQEEAVEIIKKAAKQ--------------KRNVLLIGEPGVGKSMLAKAMAELLPD 63 (608)
T ss_pred chhhHhhccCHHHHHHHHHHHHHc--------------CCCEEEECCCCCCHHHHHHHHHHHcCc
Confidence 334578999999999999888732 358999999999999999999998854
No 199
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.21 E-value=4.4e-11 Score=106.63 Aligned_cols=112 Identities=26% Similarity=0.400 Sum_probs=69.8
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh--hhhhhhHHH------HHHHHHHHHhcCCeEEEEcCCcchhc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS--KYVGQGEKL------VRALFAMARELQPSIIFIDEVDSVLS 334 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~--~~~g~~~~~------~~~lf~~a~~~~p~iLfLDEId~L~~ 334 (502)
+|||+||||||||++|+.+|+.++.+++.++++.... .+.|...-. ..+.+-.+. ..+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 5899999999999999999999999999998876442 122211100 000000000 145899999998762
Q ss_pred ccccChhHHHHHHHHHHHHHhccC----------CCCCCC-----cEEEEEEcCCCC----CCcHHHHccc
Q psy2637 335 ERKEGEHEASRRLKTEFLLEFDGL----------HSNSEH-----RLLVMGATNRPQ----ELDEAVLRRF 386 (502)
Q Consensus 335 ~~~~~~~~~~~~~~~~ll~~l~g~----------~~~~~~-----~v~vIaaTN~~~----~l~~~l~rRf 386 (502)
..++..++..++.. ...... ++++|+|+|... .+++++.+||
T Consensus 79 ----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 ----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 23444455554421 101111 389999999987 8999999997
No 200
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.21 E-value=4.8e-10 Score=125.02 Aligned_cols=165 Identities=15% Similarity=0.173 Sum_probs=98.6
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhh----c----C-CCCCcceEEecCCCCcHHHHHHHHHHHcc-------CceEEe
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFT----G----L-RTPSRGLLLFGPPGNGKTMLARAVATACN-------ATFFSI 292 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~----~----~-~~~~~~vLL~GppGtGKT~lAraia~~~~-------~~fv~i 292 (502)
.|.|++.+|+.+.-.+........-.. + . -....+|||.|+||||||.+|+++|+.+. .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 589999999998766543321100000 0 0 12346899999999999999999999653 455555
Q ss_pred eccchhhhh---hhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc---------cCCC
Q psy2637 293 SAASLTSKY---VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD---------GLHS 360 (502)
Q Consensus 293 ~~s~l~~~~---~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~---------g~~~ 360 (502)
+|....... .|... .-.+.+..|.+ |+++|||++.+... .+..|+..|+ |...
T Consensus 531 gLTa~~~~~d~~tG~~~-le~GaLvlAdg---GtL~IDEidkms~~-----------~Q~aLlEaMEqqtIsI~KaGi~~ 595 (915)
T PTZ00111 531 GLTASIKFNESDNGRAM-IQPGAVVLANG---GVCCIDELDKCHNE-----------SRLSLYEVMEQQTVTIAKAGIVA 595 (915)
T ss_pred cccchhhhcccccCccc-ccCCcEEEcCC---CeEEecchhhCCHH-----------HHHHHHHHHhCCEEEEecCCcce
Confidence 554432100 01100 00122333333 89999999988332 2333444443 3334
Q ss_pred CCCCcEEEEEEcCCCC-------------CCcHHHHcccccee-eecCCCHHHHHHHHHHHH
Q psy2637 361 NSEHRLLVMGATNRPQ-------------ELDEAVLRRFSKRI-YVTLPDSKTRKSLLEKLL 408 (502)
Q Consensus 361 ~~~~~v~vIaaTN~~~-------------~l~~~l~rRf~~~I-~i~~P~~~er~~il~~~l 408 (502)
..+.+++||||+|+.+ .+++++++||+.++ .++.|+.+.=..+..+.+
T Consensus 596 tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 596 TLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred ecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 4457899999999842 57899999998554 344455555445544444
No 201
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.21 E-value=3.1e-10 Score=119.23 Aligned_cols=174 Identities=18% Similarity=0.233 Sum_probs=101.1
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC--ceEEeecc-chhhhhhhhh
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA--TFFSISAA-SLTSKYVGQG 305 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~--~fv~i~~s-~l~~~~~g~~ 305 (502)
.++|++++++.+...+ ..+.+|||.||||||||++|+++|..++. +|..+++. ..+...+|..
T Consensus 21 ~i~gre~vI~lll~aa--------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAA--------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHH--------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 5889999998888776 23589999999999999999999998742 56655554 2233333321
Q ss_pred --HHH-HHHHHHHHH-hc--CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc-------CCCCCCCcEEEEEEc
Q psy2637 306 --EKL-VRALFAMAR-EL--QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG-------LHSNSEHRLLVMGAT 372 (502)
Q Consensus 306 --~~~-~~~lf~~a~-~~--~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g-------~~~~~~~~v~vIaaT 372 (502)
... -.+.|.... +. ...+||+|||+.+. ...+..|+..++. .....+.+ .+++||
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~r-fiv~AT 154 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERRFRNGAHEEKIPMR-LLVTAS 154 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCCc-EEEEEC
Confidence 000 012222111 10 22499999998663 3355566666631 11111222 334455
Q ss_pred CCCC---CCcHHHHccccceeeecCCC-HHHHHHHHHHHHhh--c----CCCCCHHHHHHHHHhcC
Q psy2637 373 NRPQ---ELDEAVLRRFSKRIYVTLPD-SKTRKSLLEKLLNK--H----GNPLSQLELDAVAKLTE 428 (502)
Q Consensus 373 N~~~---~l~~~l~rRf~~~I~i~~P~-~~er~~il~~~l~~--~----~~~l~~~~l~~la~~t~ 428 (502)
|... ...++++.||-..+.+++|+ .++-.+++...... . ...++.+++..+-+...
T Consensus 155 N~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~ 220 (498)
T PRK13531 155 NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIG 220 (498)
T ss_pred CCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhc
Confidence 6432 24458999997678888886 45556777553221 1 11245555555554444
No 202
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.20 E-value=3.7e-10 Score=120.48 Aligned_cols=146 Identities=26% Similarity=0.393 Sum_probs=92.8
Q ss_pred CCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc--eEEeeccch-----
Q psy2637 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT--FFSISAASL----- 297 (502)
Q Consensus 225 ~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~--fv~i~~s~l----- 297 (502)
.++.++.|++.+++.+.-.+ ..+.+++|.||||+|||++++.++..+... -..+.++.+
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 37888999888777654332 345789999999999999999999755210 001111111
Q ss_pred ---------------------hhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc
Q psy2637 298 ---------------------TSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD 356 (502)
Q Consensus 298 ---------------------~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~ 356 (502)
....+|.......+.+..|.+ ++|||||++.+. ..++..|+..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~-----------~~~~~~L~~~LE 319 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFE-----------RRTLDALREPIE 319 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCC-----------HHHHHHHHHHHH
Confidence 011222222222456666666 899999998762 234444554443
Q ss_pred c---------CCCCCCCcEEEEEEcCCCC---------------------CCcHHHHccccceeeecCCCHH
Q psy2637 357 G---------LHSNSEHRLLVMGATNRPQ---------------------ELDEAVLRRFSKRIYVTLPDSK 398 (502)
Q Consensus 357 g---------~~~~~~~~v~vIaaTN~~~---------------------~l~~~l~rRf~~~I~i~~P~~~ 398 (502)
. .....+.++++|+|+|... .++.++++||+..+.++.|+.+
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 1 1222346799999999742 4777999999988999988644
No 203
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.19 E-value=1.2e-10 Score=118.94 Aligned_cols=159 Identities=28% Similarity=0.402 Sum_probs=108.4
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeec-----------
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISA----------- 294 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~----------- 294 (502)
.|..++|++..+..|-.....| .-.++||.|+.|||||+++|+||.-+..--+...|
T Consensus 15 pf~aivGqd~lk~aL~l~av~P------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~ 82 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDP------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEE 82 (423)
T ss_pred chhhhcCchHHHHHHhhhhccc------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhh
Confidence 5778999999998886554333 23789999999999999999999987321111121
Q ss_pred --cchhhh---------------h----hhhhHHHH------------------HHHHHHHHhcCCeEEEEcCCcchhcc
Q psy2637 295 --ASLTSK---------------Y----VGQGEKLV------------------RALFAMARELQPSIIFIDEVDSVLSE 335 (502)
Q Consensus 295 --s~l~~~---------------~----~g~~~~~~------------------~~lf~~a~~~~p~iLfLDEId~L~~~ 335 (502)
.....+ + .+.++..+ -+++..|.+ +|+++||++.|..
T Consensus 83 ~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnR---GIlYvDEvnlL~d- 158 (423)
T COG1239 83 MCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANR---GILYVDEVNLLDD- 158 (423)
T ss_pred hhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccC---CEEEEeccccccH-
Confidence 000000 0 11222211 122333333 8999999998832
Q ss_pred cccChhHHHHHHHHHHHHH---------hccCCCCCCCcEEEEEEcCCC-CCCcHHHHccccceeeecCC-CHHHHHHHH
Q psy2637 336 RKEGEHEASRRLKTEFLLE---------FDGLHSNSEHRLLVMGATNRP-QELDEAVLRRFSKRIYVTLP-DSKTRKSLL 404 (502)
Q Consensus 336 ~~~~~~~~~~~~~~~ll~~---------l~g~~~~~~~~v~vIaaTN~~-~~l~~~l~rRf~~~I~i~~P-~~~er~~il 404 (502)
.++..|+.. .+|..-..+.++++|+|+|+- ..|.+.++.||...+.+..| +.++|.+++
T Consensus 159 ----------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii 228 (423)
T COG1239 159 ----------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEII 228 (423)
T ss_pred ----------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHH
Confidence 233344443 346666677889999999986 58999999999988988887 889999999
Q ss_pred HHHHhh
Q psy2637 405 EKLLNK 410 (502)
Q Consensus 405 ~~~l~~ 410 (502)
.+....
T Consensus 229 ~r~~~f 234 (423)
T COG1239 229 RRRLAF 234 (423)
T ss_pred HHHHHh
Confidence 887764
No 204
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=6.7e-11 Score=122.28 Aligned_cols=47 Identities=45% Similarity=0.678 Sum_probs=41.3
Q ss_pred CCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 225 ~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.+|.|++||+.+|+.+.-+. ..+.++|++||||||||++|+.+..-+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 47899999999999998776 346899999999999999999988755
No 205
>KOG0745|consensus
Probab=99.18 E-value=4.3e-10 Score=114.10 Aligned_cols=191 Identities=22% Similarity=0.376 Sum_probs=120.7
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh-hhhhhh-HHHHHHHHHHHH----hcCCeEEEEcCCcchh
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS-KYVGQG-EKLVRALFAMAR----ELQPSIIFIDEVDSVL 333 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~-~~~g~~-~~~~~~lf~~a~----~~~p~iLfLDEId~L~ 333 (502)
...+|||.||+|+|||+||+.+|+-++.||...+|..+.. .|+|+. +..+..++..|. ..+.+|+||||+|.+.
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence 3578999999999999999999999999999999999875 577764 444455554432 2345899999999997
Q ss_pred ccccc---ChhHHHHHHHHHHHHHhccCC---------CCCC--------CcEEEEEEcCCC--C---------------
Q psy2637 334 SERKE---GEHEASRRLKTEFLLEFDGLH---------SNSE--------HRLLVMGATNRP--Q--------------- 376 (502)
Q Consensus 334 ~~~~~---~~~~~~~~~~~~ll~~l~g~~---------~~~~--------~~v~vIaaTN~~--~--------------- 376 (502)
..... ...-....+++.||..++|.. ..+. .+|++|+..--. +
T Consensus 305 ~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg 384 (564)
T KOG0745|consen 305 KKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFG 384 (564)
T ss_pred ccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccC
Confidence 43221 112234567778888887531 1111 245555442000 0
Q ss_pred ---------------------------------------CCcHHHHccccceeeecCCCHHHHHHHHHH-----------
Q psy2637 377 ---------------------------------------ELDEAVLRRFSKRIYVTLPDSKTRKSLLEK----------- 406 (502)
Q Consensus 377 ---------------------------------------~l~~~l~rRf~~~I~i~~P~~~er~~il~~----------- 406 (502)
.+-|++.-||+..+.++..+.+...+++..
T Consensus 385 ~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~ 464 (564)
T KOG0745|consen 385 APSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKK 464 (564)
T ss_pred CCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHH
Confidence 122556668888888888888888776641
Q ss_pred HHhhcC--CCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhhHHhh
Q psy2637 407 LLNKHG--NPLSQLELDAVAKLTE--GYSGSDLTNLAKDAALGPIREL 450 (502)
Q Consensus 407 ~l~~~~--~~l~~~~l~~la~~t~--g~s~~dL~~L~~~a~~~airel 450 (502)
++...+ ..+++..++.+|+..- +--.+.|+.++..+.+.+.-+.
T Consensus 465 lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfev 512 (564)
T KOG0745|consen 465 LFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEV 512 (564)
T ss_pred HhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccC
Confidence 111111 1245666676665442 2334667777776666555444
No 206
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=1.2e-09 Score=111.73 Aligned_cols=153 Identities=15% Similarity=0.159 Sum_probs=102.1
Q ss_pred CcccccC-hHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCce--EEeeccc------
Q psy2637 226 QWQDIAG-QEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATF--FSISAAS------ 296 (502)
Q Consensus 226 ~~~~iiG-~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~f--v~i~~s~------ 296 (502)
.|+.|+| ++.+++.+...+... ..+..+||+||+|+||+++|+++++.+..+- -...|..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~-----------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN-----------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4778888 899999999887332 2356679999999999999999999863210 0000100
Q ss_pred hh-----hh-h---hhh--hHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCC
Q psy2637 297 LT-----SK-Y---VGQ--GEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSN 361 (502)
Q Consensus 297 l~-----~~-~---~g~--~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 361 (502)
+. +- + .|. .-..++.+.+.+.. ....|++|||+|.+. ....+.|+..++ .
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-----------~~a~NaLLK~LE----E 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-----------ASAANSLLKFLE----E 136 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-----------HHHHHHHHHHhc----C
Confidence 00 00 0 011 11233444443331 234699999998872 224456777665 3
Q ss_pred CCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHH
Q psy2637 362 SEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLE 405 (502)
Q Consensus 362 ~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~ 405 (502)
++..+++|.+|+.+..+.+.+++|+. .++|.+|+.++..+.+.
T Consensus 137 Pp~~~~~Il~t~~~~~ll~TIrSRc~-~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 137 PSGGTTAILLTENKHQILPTILSRCQ-VVEFRPLPPESLIQRLQ 179 (329)
T ss_pred CCCCceEEEEeCChHhCcHHHHhhce-eeeCCCCCHHHHHHHHH
Confidence 45668888888888899999999995 89999999998876664
No 207
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.14 E-value=5.8e-10 Score=116.31 Aligned_cols=143 Identities=20% Similarity=0.312 Sum_probs=86.8
Q ss_pred cccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC--ce-----EEeeccchhh
Q psy2637 227 WQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA--TF-----FSISAASLTS 299 (502)
Q Consensus 227 ~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~--~f-----v~i~~s~l~~ 299 (502)
++++.+.+...+.+...+. ...+++|+||||||||++|+.+|..+.. .+ +.+...--..
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 3456666666666665552 2478999999999999999999998742 22 2222111111
Q ss_pred hhh--------hhh--HHHHHHHHHHHHh--cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc----------
Q psy2637 300 KYV--------GQG--EKLVRALFAMARE--LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG---------- 357 (502)
Q Consensus 300 ~~~--------g~~--~~~~~~lf~~a~~--~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g---------- 357 (502)
.++ |.. ...+..++..|.. ..|.+||||||+..... ++..+++..++.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~----------kiFGel~~lLE~~~rg~~~~v~ 309 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS----------KVFGEVMMLMEHDKRGENWSVP 309 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH----------Hhhhhhhhhcccccccccccee
Confidence 111 110 1122334455554 25789999999876322 122222222221
Q ss_pred --------CCCCCCCcEEEEEEcCCCC----CCcHHHHccccceeeecC
Q psy2637 358 --------LHSNSEHRLLVMGATNRPQ----ELDEAVLRRFSKRIYVTL 394 (502)
Q Consensus 358 --------~~~~~~~~v~vIaaTN~~~----~l~~~l~rRf~~~I~i~~ 394 (502)
..-..+.++.||||+|..+ .+|.+++|||. .|++.+
T Consensus 310 l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 310 LTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred eeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhh-eEEecC
Confidence 0112346899999999876 79999999995 777776
No 208
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.14 E-value=2.3e-10 Score=99.96 Aligned_cols=128 Identities=34% Similarity=0.483 Sum_probs=79.3
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCc---eEEeeccchhhhh--------------hhhhHHHHHHHHHHHHhcCCeE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNAT---FFSISAASLTSKY--------------VGQGEKLVRALFAMARELQPSI 323 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~---fv~i~~s~l~~~~--------------~g~~~~~~~~lf~~a~~~~p~i 323 (502)
+.+++|+||||||||++++.++..+... ++.+++....... ...........++.+....+++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999999664 7888877554321 1223344567778888777899
Q ss_pred EEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCC-CCCCcHHHHccccceeeecCC
Q psy2637 324 IFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR-PQELDEAVLRRFSKRIYVTLP 395 (502)
Q Consensus 324 LfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~-~~~l~~~l~rRf~~~I~i~~P 395 (502)
|++||++.+........ ............ ........+|+++|. ....+..+.+|++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEAL----LLLLEELRLLLL---LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHH----HHhhhhhHHHHH---HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 99999998854321100 000000000000 011234688888886 344555555577766666543
No 209
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=1.2e-09 Score=111.47 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=103.0
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccCc--eEEeeccchh-----------hh-h-------hhhhHHHHHHHHHHHH
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNAT--FFSISAASLT-----------SK-Y-------VGQGEKLVRALFAMAR 317 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~~--fv~i~~s~l~-----------~~-~-------~g~~~~~~~~lf~~a~ 317 (502)
..+..+||+||+|+||+++|+++|+.+... .-.-.|+... +- + ....-+.++.+.+.+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 345779999999999999999999987421 1000111110 00 0 0011233455554443
Q ss_pred h----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeec
Q psy2637 318 E----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVT 393 (502)
Q Consensus 318 ~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~ 393 (502)
. ....|++||++|.|. ....+.|+..++ .++.++.+|.+|+.++.+.+.+++|+. .+.|+
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~-----------~~aaNaLLK~LE----EPp~~~~fiL~t~~~~~ll~TI~SRc~-~~~~~ 163 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMN-----------RNAANALLKSLE----EPSGDTVLLLISHQPSRLLPTIKSRCQ-QQACP 163 (328)
T ss_pred hccccCCCeEEEECChhhCC-----------HHHHHHHHHHHh----CCCCCeEEEEEECChhhCcHHHHhhce-eeeCC
Confidence 2 234699999999883 234566777665 345678899999999999999999996 79999
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHH
Q psy2637 394 LPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDL 435 (502)
Q Consensus 394 ~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL 435 (502)
+|+.++..+.+..... ...+.....++..+.|-.+..+
T Consensus 164 ~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~~A~ 201 (328)
T PRK05707 164 LPSNEESLQWLQQALP----ESDERERIELLTLAGGSPLRAL 201 (328)
T ss_pred CcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHHHHH
Confidence 9999988877765431 2345555666777777555444
No 210
>KOG0990|consensus
Probab=99.13 E-value=5e-10 Score=110.03 Aligned_cols=192 Identities=18% Similarity=0.195 Sum_probs=130.9
Q ss_pred HhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCce------EE
Q psy2637 218 ILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATF------FS 291 (502)
Q Consensus 218 ~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~f------v~ 291 (502)
+++++++...++++++++....+.+....+ + -.+.|+|||||||||+...+.|..+..+. ..
T Consensus 31 wvekyrP~~l~dv~~~~ei~st~~~~~~~~----------~--lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~le 98 (360)
T KOG0990|consen 31 WVEKYRPPFLGIVIKQEPIWSTENRYSGMP----------G--LPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLE 98 (360)
T ss_pred CccCCCCchhhhHhcCCchhhHHHHhccCC----------C--CCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHH
Confidence 345677778899999999988888875222 1 24899999999999999999999885531 12
Q ss_pred eeccchhhhhhhhhHHHHHHHHHHHHh-------cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCC
Q psy2637 292 ISAASLTSKYVGQGEKLVRALFAMARE-------LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEH 364 (502)
Q Consensus 292 i~~s~l~~~~~g~~~~~~~~lf~~a~~-------~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 364 (502)
.|.++-.+. +.... -...|...+. .....++|||+|.+..+ .++.|.+..+.. ..
T Consensus 99 lnaSd~rgi--d~vr~-qi~~fast~~~~~fst~~~fKlvILDEADaMT~~-----------AQnALRRviek~----t~ 160 (360)
T KOG0990|consen 99 LNASDDRGI--DPVRQ-QIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD-----------AQNALRRVIEKY----TA 160 (360)
T ss_pred hhccCccCC--cchHH-HHHHHHhhccceeccccCceeEEEecchhHhhHH-----------HHHHHHHHHHHh----cc
Confidence 222222111 11111 1233444442 14579999999988432 233333333332 24
Q ss_pred cEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy2637 365 RLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAK 440 (502)
Q Consensus 365 ~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~ 440 (502)
+++++..+|.+..+.+++.+||. .+.+.+.+...-...+.++++......+.+....++....|.....+..|..
T Consensus 161 n~rF~ii~n~~~ki~pa~qsRct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs 235 (360)
T KOG0990|consen 161 NTRFATISNPPQKIHPAQQSRCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQS 235 (360)
T ss_pred ceEEEEeccChhhcCchhhcccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 56777779999999999999997 7889988988888999999988777778777777777776655555555544
No 211
>KOG1942|consensus
Probab=99.12 E-value=5.9e-09 Score=101.19 Aligned_cols=130 Identities=20% Similarity=0.221 Sum_probs=82.9
Q ss_pred CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCC-------------CCCCcHHHHccc
Q psy2637 320 QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR-------------PQELDEAVLRRF 386 (502)
Q Consensus 320 ~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~-------------~~~l~~~l~rRf 386 (502)
-|++|||||++.|. -.....|-..++. +-. -+||.|||+ |..+++.+++|+
T Consensus 296 vPGVLFIDEVhMLD-----------iEcFTyL~kalES----~ia-PivifAsNrG~~~irGt~d~~sPhGip~dllDRl 359 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD-----------IECFTYLHKALES----PIA-PIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL 359 (456)
T ss_pred cCcceEeeehhhhh-----------hHHHHHHHHHhcC----CCC-ceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe
Confidence 58899999998772 1122223333432 222 255566664 346889999998
Q ss_pred cceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcc
Q psy2637 387 SKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNI 466 (502)
Q Consensus 387 ~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~I 466 (502)
..|...+++.++.++|++......+..++++.+..++.....- .|+..++-..+..+- ........|
T Consensus 360 -~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~t---sLRy~vqLl~p~~~~---------ak~~g~~~i 426 (456)
T KOG1942|consen 360 -LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTST---SLRYAVQLLTPASIL---------AKTNGRKEI 426 (456)
T ss_pred -eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccch---hHHHHHHhcCHHHHH---------HHHcCCcee
Confidence 4788888999999999999999999999999998888765432 333333222222211 112234567
Q ss_pred cHHHHHHHHHhh
Q psy2637 467 SYRDFLESLKRI 478 (502)
Q Consensus 467 t~~d~~~al~~~ 478 (502)
..+|+.+.-.-+
T Consensus 427 ~v~dvee~~~Lf 438 (456)
T KOG1942|consen 427 SVEDVEEVTELF 438 (456)
T ss_pred ecccHHHHHHHH
Confidence 777777665433
No 212
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.10 E-value=2e-09 Score=117.69 Aligned_cols=202 Identities=15% Similarity=0.204 Sum_probs=122.9
Q ss_pred HhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEE-ee---
Q psy2637 218 ILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFS-IS--- 293 (502)
Q Consensus 218 ~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~-i~--- 293 (502)
+.+.+.|..+++++|++..++.|..++..... -..+...++|+||||+|||++++.+|+.++..++. .+
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~ 146 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTL 146 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhh
Confidence 34557888999999999999999988743211 01233458999999999999999999998765543 11
Q ss_pred ccchhh-------------hhhhhhHHHHHHHHHHHHh----------cCCeEEEEcCCcchhcccccChhHHHHHHHHH
Q psy2637 294 AASLTS-------------KYVGQGEKLVRALFAMARE----------LQPSIIFIDEVDSVLSERKEGEHEASRRLKTE 350 (502)
Q Consensus 294 ~s~l~~-------------~~~g~~~~~~~~lf~~a~~----------~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ 350 (502)
|..... .+.. ....+..++..+.. ....||||||++.++... ...+..
T Consensus 147 ~~~~~~~~~~~~s~~~~~~~~~s-~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~--------~~~lq~ 217 (637)
T TIGR00602 147 PDFQKNDHKVTLSLESCFSNFQS-QIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD--------TRALHE 217 (637)
T ss_pred hcccccccccchhhhhccccccc-hHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh--------HHHHHH
Confidence 111110 0111 11223344444431 234699999998875321 112223
Q ss_pred HHH-HhccCCCCCCCcEEEEEEcC-CCC--------------CCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcC
Q psy2637 351 FLL-EFDGLHSNSEHRLLVMGATN-RPQ--------------ELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHG 412 (502)
Q Consensus 351 ll~-~l~g~~~~~~~~v~vIaaTN-~~~--------------~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~ 412 (502)
++. ... ... .+.+|++++ .+. .+.+++++ |+. +|.|.+.+..+....+...+...+
T Consensus 218 lLr~~~~---e~~--~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~ 291 (637)
T TIGR00602 218 ILRWKYV---SIG--RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEA 291 (637)
T ss_pred HHHHHhh---cCC--CceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhh
Confidence 333 111 111 233333333 111 13467776 563 799999999998888888887643
Q ss_pred CC-------CCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2637 413 NP-------LSQLELDAVAKLTEGYSGSDLTNLAKD 441 (502)
Q Consensus 413 ~~-------l~~~~l~~la~~t~g~s~~dL~~L~~~ 441 (502)
.. ..+..++.|+....|.-..+|..|.-.
T Consensus 292 ~~~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 292 KKNGEKIKVPKKTSVELLCQGCSGDIRSAINSLQFS 327 (637)
T ss_pred hccccccccCCHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 21 134678888888888877777777543
No 213
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.07 E-value=9.8e-10 Score=120.42 Aligned_cols=50 Identities=30% Similarity=0.471 Sum_probs=43.0
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
-++..|++++|++.+++.+...+.. ..+++|+||||||||++|+++++.+
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l 74 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELL 74 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 4567899999999999999887732 2579999999999999999999865
No 214
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.02 E-value=1.5e-08 Score=100.36 Aligned_cols=213 Identities=22% Similarity=0.263 Sum_probs=126.6
Q ss_pred cccChHHHHHHHH---HHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc---------CceEEeeccc
Q psy2637 229 DIAGQEVAKQALH---EMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN---------ATFFSISAAS 296 (502)
Q Consensus 229 ~iiG~~~~~~~l~---~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~---------~~fv~i~~s~ 296 (502)
..+|...+.+.+. +++..|.. ....++||+|++|.|||++++.+..... .|++.+.+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~---------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKR---------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcc---------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 3566665555554 44444321 3347899999999999999999998652 4666665533
Q ss_pred hhhh--------------h--hhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCC
Q psy2637 297 LTSK--------------Y--VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHS 360 (502)
Q Consensus 297 l~~~--------------~--~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 360 (502)
-.+. + ...............+..++.+|+|||++.+.... .+-+.+++..+..+..
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs--------~~~qr~~Ln~LK~L~N 177 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS--------YRKQREFLNALKFLGN 177 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc--------HHHHHHHHHHHHHHhh
Confidence 2210 0 01122223344566677788899999999975332 1223334444443433
Q ss_pred CCCCcEEEEEEcCCC--CCCcHHHHccccceeeecCC-CHHHHHHHHHHHHhhcC----CCCCH-HHHHHHHHhcCCCCH
Q psy2637 361 NSEHRLLVMGATNRP--QELDEAVLRRFSKRIYVTLP-DSKTRKSLLEKLLNKHG----NPLSQ-LELDAVAKLTEGYSG 432 (502)
Q Consensus 361 ~~~~~v~vIaaTN~~--~~l~~~l~rRf~~~I~i~~P-~~~er~~il~~~l~~~~----~~l~~-~~l~~la~~t~g~s~ 432 (502)
.-...++.+||-... =.-|+.+.+||. .+.++.- ..++...++..+-.... ..+.+ .....+-..++|..|
T Consensus 178 eL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 178 ELQIPIVGVGTREAYRALRTDPQLASRFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred ccCCCeEEeccHHHHHHhccCHHHHhccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 434445555544322 245688889996 6666653 22344445544443322 12333 444778888999887
Q ss_pred HHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHH
Q psy2637 433 SDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFL 472 (502)
Q Consensus 433 ~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~ 472 (502)
++..|+..|+..|++.. ...||.+.+.
T Consensus 257 -~l~~ll~~aA~~AI~sG------------~E~It~~~l~ 283 (302)
T PF05621_consen 257 -ELSRLLNAAAIAAIRSG------------EERITREILD 283 (302)
T ss_pred -HHHHHHHHHHHHHHhcC------------CceecHHHHh
Confidence 67888899998888865 3457766654
No 215
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=1.2e-08 Score=103.52 Aligned_cols=171 Identities=13% Similarity=0.117 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc--eEEeeccchh-----------h-
Q psy2637 234 EVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT--FFSISAASLT-----------S- 299 (502)
Q Consensus 234 ~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~--fv~i~~s~l~-----------~- 299 (502)
....+.+...+... ..+..+||+||+|+||+++|+++|+.+... .-.-.|+... +
T Consensus 8 ~~~~~~l~~~~~~~-----------rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (325)
T PRK06871 8 QPTYQQITQAFQQG-----------LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDF 76 (325)
T ss_pred HHHHHHHHHHHHcC-----------CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 44556666665321 235778999999999999999999977321 1001121110 0
Q ss_pred ----hhhh--hhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEE
Q psy2637 300 ----KYVG--QGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVM 369 (502)
Q Consensus 300 ----~~~g--~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vI 369 (502)
...| ..-+.++.+.+.+.. ....|++||++|.|. ....+.|+..++ .++.++++|
T Consensus 77 ~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~-----------~~AaNaLLKtLE----EPp~~~~fi 141 (325)
T PRK06871 77 HILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT-----------EAAANALLKTLE----EPRPNTYFL 141 (325)
T ss_pred EEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhC-----------HHHHHHHHHHhc----CCCCCeEEE
Confidence 0001 122334444444332 234699999999883 234556777665 466778999
Q ss_pred EEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHH
Q psy2637 370 GATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLT 436 (502)
Q Consensus 370 aaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~ 436 (502)
.+|+.++.+.+.+++|+. .+.|.+|+.++..+.+..... ..+.....++..+.|-.+..+.
T Consensus 142 L~t~~~~~llpTI~SRC~-~~~~~~~~~~~~~~~L~~~~~-----~~~~~~~~~~~l~~g~p~~A~~ 202 (325)
T PRK06871 142 LQADLSAALLPTIYSRCQ-TWLIHPPEEQQALDWLQAQSS-----AEISEILTALRINYGRPLLALT 202 (325)
T ss_pred EEECChHhCchHHHhhce-EEeCCCCCHHHHHHHHHHHhc-----cChHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999996 899999999988877765421 2233344555566664444433
No 216
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.98 E-value=4e-10 Score=97.79 Aligned_cols=113 Identities=27% Similarity=0.373 Sum_probs=59.4
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEeecc-ch-hhhhhhhhHHH-HHHHHHHHHh-cCCeEEEEcCCcchhccccc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSISAA-SL-TSKYVGQGEKL-VRALFAMARE-LQPSIIFIDEVDSVLSERKE 338 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s-~l-~~~~~g~~~~~-~~~lf~~a~~-~~p~iLfLDEId~L~~~~~~ 338 (502)
||||.|+||+|||++|+++|+.++..|.+|.+. ++ .+...|..--. -.+.|+...+ --..++++|||+...++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappk--- 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPK--- 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HH---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHH---
Confidence 689999999999999999999999999988774 22 23322221000 0000000000 00159999999877443
Q ss_pred ChhHHHHHHHHHHHHHhc-------cCCCCCCCcEEEEEEcCCCC-----CCcHHHHccc
Q psy2637 339 GEHEASRRLKTEFLLEFD-------GLHSNSEHRLLVMGATNRPQ-----ELDEAVLRRF 386 (502)
Q Consensus 339 ~~~~~~~~~~~~ll~~l~-------g~~~~~~~~v~vIaaTN~~~-----~l~~~l~rRf 386 (502)
.+..++..|. |....-+.++.||||.|+.+ .+++++++||
T Consensus 78 --------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 78 --------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp --------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred --------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 4444555443 33334456789999999865 7889999998
No 217
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=1.6e-08 Score=103.34 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=103.9
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccC--ceEEeeccchh-----------h-----hh---hhhhHHHHHHHHHHHH-
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNA--TFFSISAASLT-----------S-----KY---VGQGEKLVRALFAMAR- 317 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~--~fv~i~~s~l~-----------~-----~~---~g~~~~~~~~lf~~a~- 317 (502)
.+..+||+||+|+||+++|.++|+.+.. +--.-.|+... + .- ....-+.++.+.+.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 3578999999999999999999998722 11001121110 0 00 0011223444444433
Q ss_pred ---hcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecC
Q psy2637 318 ---ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTL 394 (502)
Q Consensus 318 ---~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~ 394 (502)
.....|++||++|.|. ....+.||..++ .++.++++|.+|+.++.+.+.++||+. .+.|++
T Consensus 103 ~~~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLE----EPp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~~~ 166 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLT-----------DAAANALLKTLE----EPPENTWFFLACREPARLLATLRSRCR-LHYLAP 166 (334)
T ss_pred ccccCCceEEEEcchHhhC-----------HHHHHHHHHHhc----CCCCCeEEEEEECChhhChHHHHhccc-cccCCC
Confidence 2344699999999883 234566777775 466778999999999999999999996 789999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHH
Q psy2637 395 PDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTN 437 (502)
Q Consensus 395 P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~ 437 (502)
|+.++..+.+... . ..++.....++..+.|-.+..+..
T Consensus 167 ~~~~~~~~~L~~~---~--~~~~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 167 PPEQYALTWLSRE---V--TMSQDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred CCHHHHHHHHHHc---c--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9988887766432 1 245555667777777766655544
No 218
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.97 E-value=9.2e-09 Score=104.71 Aligned_cols=62 Identities=23% Similarity=0.366 Sum_probs=48.2
Q ss_pred cc-cccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC-------ceEEeec
Q psy2637 227 WQ-DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA-------TFFSISA 294 (502)
Q Consensus 227 ~~-~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~-------~fv~i~~ 294 (502)
|+ ++.|+++++.++.+++.... .+.......++|+||||+|||++|++|++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 55 89999999999988874332 223344577899999999999999999998854 7776654
No 219
>KOG2680|consensus
Probab=98.97 E-value=5e-08 Score=95.12 Aligned_cols=132 Identities=20% Similarity=0.184 Sum_probs=92.9
Q ss_pred CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCC------------CCCCcHHHHcccc
Q psy2637 320 QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR------------PQELDEAVLRRFS 387 (502)
Q Consensus 320 ~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~------------~~~l~~~l~rRf~ 387 (502)
-|+||||||++.|.-. -...|-+.+++- -.+++ |.+||+ |..++-.++.|+-
T Consensus 288 vpGVLFIDEvHMLDIE-----------cFsFlNrAlE~d----~~Pii-imaTNrgit~iRGTn~~SphGiP~D~lDR~l 351 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDIE-----------CFSFLNRALEND----MAPII-IMATNRGITRIRGTNYRSPHGIPIDLLDRML 351 (454)
T ss_pred ccceEEEeeehhhhhH-----------HHHHHHHHhhhc----cCcEE-EEEcCCceEEeecCCCCCCCCCcHHHhhhhh
Confidence 4789999999877211 111122233321 12344 445553 4578889999984
Q ss_pred ceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCccc
Q psy2637 388 KRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNIS 467 (502)
Q Consensus 388 ~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It 467 (502)
.|...+++.++...|++..+......+++..+..|......-+-+---.|+..|...+.++. +..+.
T Consensus 352 -II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk------------~~~v~ 418 (454)
T KOG2680|consen 352 -IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK------------GKVVE 418 (454)
T ss_pred -eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc------------Cceee
Confidence 88999999999999999999999999999988888877665555555567777777777664 45788
Q ss_pred HHHHHHHHHhhcC
Q psy2637 468 YRDFLESLKRIRR 480 (502)
Q Consensus 468 ~~d~~~al~~~~~ 480 (502)
.+|+..+..-+-.
T Consensus 419 ~~di~r~y~LFlD 431 (454)
T KOG2680|consen 419 VDDIERVYRLFLD 431 (454)
T ss_pred hhHHHHHHHHHhh
Confidence 8999988876543
No 220
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.96 E-value=7.1e-09 Score=95.19 Aligned_cols=134 Identities=22% Similarity=0.292 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc-----------------------
Q psy2637 232 GQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT----------------------- 288 (502)
Q Consensus 232 G~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~----------------------- 288 (502)
|++.+.+.+...+... .-+..+||+||+|+||+++|+++|+.+...
T Consensus 1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 7888889998887433 235678999999999999999999987211
Q ss_pred eEEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCC
Q psy2637 289 FFSISAASLTSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEH 364 (502)
Q Consensus 289 fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 364 (502)
++.++...... .-..+.++.+.+.+.. ....|++|||+|.|. ...++.|+..|+ .++.
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-----------~~a~NaLLK~LE----epp~ 131 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-----------EEAQNALLKTLE----EPPE 131 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHH----STTT
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-----------HHHHHHHHHHhc----CCCC
Confidence 11111111000 0112334445444432 234699999999883 335667777776 4556
Q ss_pred cEEEEEEcCCCCCCcHHHHccccceeeecCC
Q psy2637 365 RLLVMGATNRPQELDEAVLRRFSKRIYVTLP 395 (502)
Q Consensus 365 ~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P 395 (502)
++++|.+|+.++.+.+.+++|+. .+.|+++
T Consensus 132 ~~~fiL~t~~~~~il~TI~SRc~-~i~~~~l 161 (162)
T PF13177_consen 132 NTYFILITNNPSKILPTIRSRCQ-VIRFRPL 161 (162)
T ss_dssp TEEEEEEES-GGGS-HHHHTTSE-EEEE---
T ss_pred CEEEEEEECChHHChHHHHhhce-EEecCCC
Confidence 79999999999999999999995 7777654
No 221
>KOG1514|consensus
Probab=98.95 E-value=2.4e-08 Score=107.05 Aligned_cols=245 Identities=15% Similarity=0.201 Sum_probs=152.8
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc----------cCceEEeeccch
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC----------NATFFSISAASL 297 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv~i~~s~l 297 (502)
+.+.+.+.....|..++..... . ...+..++|.|-||||||.+++.+-+.+ ..+|+.||+-.+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~------~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFIS------D-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcC------C-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 3466677777777776633221 1 1234589999999999999999998865 367888888666
Q ss_pred hhh----------hhhhh------HHHHHHHHHHH-HhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCC
Q psy2637 298 TSK----------YVGQG------EKLVRALFAMA-RELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHS 360 (502)
Q Consensus 298 ~~~----------~~g~~------~~~~~~lf~~a-~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 360 (502)
.+. +.|.. -..+...|... ....++||+|||+|.|....+ ..+..+..+..
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q------------dVlYn~fdWpt 536 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ------------DVLYNIFDWPT 536 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH------------HHHHHHhcCCc
Confidence 532 11111 11112222211 123568999999999965421 33444444555
Q ss_pred CCCCcEEEEEEcCCCCCCc----HHHHcccc-ceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHH
Q psy2637 361 NSEHRLLVMGATNRPQELD----EAVLRRFS-KRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDL 435 (502)
Q Consensus 361 ~~~~~v~vIaaTN~~~~l~----~~l~rRf~-~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL 435 (502)
.++.+++||+.+|..+... ...-+|++ ..+.|.+++..+..+|+...+... ..+....++.+|+.....||..-
T Consensus 537 ~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 537 LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred CCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHH
Confidence 6667899999988764332 23334654 368999999999999999988765 33456667777776665555332
Q ss_pred --HHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Q psy2637 436 --TNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDY 497 (502)
Q Consensus 436 --~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~ 497 (502)
..+|++|.--+-.+.. . -.......|++.|+.+|+..+..+....-+......++.|
T Consensus 616 raldic~RA~Eia~~~~~--~---~k~~~~q~v~~~~v~~Ai~em~~~~~~~~i~glS~~~k~f 674 (767)
T KOG1514|consen 616 RALDICRRAAEIAEERNV--K---GKLAVSQLVGILHVMEAINEMLASPYIKALKGLSFLQKIF 674 (767)
T ss_pred HHHHHHHHHHHHhhhhcc--c---ccccccceeehHHHHHHHHHHhhhhHHHHhcchHHHHHHH
Confidence 2356666654443321 0 0222335689999999999887776655555555555444
No 222
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=3.1e-08 Score=100.36 Aligned_cols=173 Identities=20% Similarity=0.219 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc---------------------eEE
Q psy2637 233 QEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT---------------------FFS 291 (502)
Q Consensus 233 ~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~---------------------fv~ 291 (502)
+..+.+.+...+... .-+..+||+||+|+||+++|.++|+.+... +..
T Consensus 9 ~~~~~~~l~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 9 QQRAYDQTVAALDAG-----------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 345666777666322 235679999999999999999999976221 111
Q ss_pred ee--ccchhhh-hhhhhHHHHHHHHHHHHhc----CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCC
Q psy2637 292 IS--AASLTSK-YVGQGEKLVRALFAMAREL----QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEH 364 (502)
Q Consensus 292 i~--~s~l~~~-~~g~~~~~~~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 364 (502)
+. ...-..+ .....-+.++.+.+.+... ...|++||++|.|. ....+.|+..++ .++.
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLE----EPp~ 142 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN-----------RAACNALLKTLE----EPSP 142 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC-----------HHHHHHHHHHhh----CCCC
Confidence 10 0000000 0001123344454444322 23599999999883 234556777665 3556
Q ss_pred cEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHH
Q psy2637 365 RLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNL 438 (502)
Q Consensus 365 ~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L 438 (502)
++++|.+|+.++.+.+.+++|+. .+.|..|+.++..+.+.. .+ .++.....++..+.|-.+..+..+
T Consensus 143 ~~~fiL~~~~~~~lLpTIrSRCq-~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 143 GRYLWLISAQPARLPATIRSRCQ-RLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CCeEEEEECChhhCchHHHhhhe-EeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHh
Confidence 78888899999999999999996 899999999887776643 22 345555667778887766665544
No 223
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.94 E-value=1.2e-08 Score=111.21 Aligned_cols=189 Identities=11% Similarity=0.091 Sum_probs=121.5
Q ss_pred cceEEecCCCCcHHHHHHHHHHHcc--CceEEeeccchhhhhhhhhH--H--------HHHHHHHHHHhcCCeEEEEcCC
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACN--ATFFSISAASLTSKYVGQGE--K--------LVRALFAMARELQPSIIFIDEV 329 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~--~~fv~i~~s~l~~~~~g~~~--~--------~~~~lf~~a~~~~p~iLfLDEI 329 (502)
.+|+|.|+.||||++++++++..+. .||+.+..+.-....+|... . ...+++..|.+ +||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 6899999999999999999999985 48888776665555555431 1 11344444444 89999999
Q ss_pred cchhcccccChhHHHHHHHHHHHHHhc---------cCCCCCCCcEEEEEEcCCC---CCCcHHHHccccceeeecCCCH
Q psy2637 330 DSVLSERKEGEHEASRRLKTEFLLEFD---------GLHSNSEHRLLVMGATNRP---QELDEAVLRRFSKRIYVTLPDS 397 (502)
Q Consensus 330 d~L~~~~~~~~~~~~~~~~~~ll~~l~---------g~~~~~~~~v~vIaaTN~~---~~l~~~l~rRf~~~I~i~~P~~ 397 (502)
+.+. ..++..|+..++ |.....+.++.+|++-|.. ..++++++.||+..+.+..|+.
T Consensus 103 n~~~-----------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~ 171 (584)
T PRK13406 103 ERLE-----------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLAL 171 (584)
T ss_pred ccCC-----------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCCh
Confidence 8773 334555555553 4444455678999875432 4589999999999999998876
Q ss_pred HHHH-------HHHHHHHhhcCCCCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCccc
Q psy2637 398 KTRK-------SLLEKLLNKHGNPLSQLELDAVAKLTE--GY-SGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNIS 467 (502)
Q Consensus 398 ~er~-------~il~~~l~~~~~~l~~~~l~~la~~t~--g~-s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It 467 (502)
.+.. ++....-.-....+++..++.++..+. |. +.+.-..+++.|+..+.- .....|+
T Consensus 172 ~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL------------~Gr~~V~ 239 (584)
T PRK13406 172 RDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAAL------------AGRTAVE 239 (584)
T ss_pred HHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHH------------cCCCCCC
Confidence 5432 122111111234456666665554332 33 445555555555544332 3457899
Q ss_pred HHHHHHHHH
Q psy2637 468 YRDFLESLK 476 (502)
Q Consensus 468 ~~d~~~al~ 476 (502)
.+|+.+|+.
T Consensus 240 ~~dv~~Aa~ 248 (584)
T PRK13406 240 EEDLALAAR 248 (584)
T ss_pred HHHHHHHHH
Confidence 999988876
No 224
>KOG1051|consensus
Probab=98.91 E-value=4.6e-08 Score=109.28 Aligned_cols=128 Identities=23% Similarity=0.370 Sum_probs=93.8
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCCC--CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhh---
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLRT--PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTS--- 299 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~--~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~--- 299 (502)
+.++||+++...|.++|.... .++.. +...+||.||+|+|||-+|+++|..+ ...|+.++++++..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr------~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSR------AGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhh------cccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 358999999999999996543 23333 67889999999999999999999987 56799999997442
Q ss_pred ------hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCC--C-----CCcE
Q psy2637 300 ------KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSN--S-----EHRL 366 (502)
Q Consensus 300 ------~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~--~-----~~~v 366 (502)
.|.|..+. ..+.+..++...+||+|||||.. ...+++.+++.++...-. . -.++
T Consensus 636 ligsp~gyvG~e~g--g~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~ 702 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNA 702 (898)
T ss_pred ccCCCcccccchhH--HHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccce
Confidence 24444432 46777777777799999999865 344666677776532111 1 1468
Q ss_pred EEEEEcCC
Q psy2637 367 LVMGATNR 374 (502)
Q Consensus 367 ~vIaaTN~ 374 (502)
+||+|+|.
T Consensus 703 I~IMTsn~ 710 (898)
T KOG1051|consen 703 IFIMTSNV 710 (898)
T ss_pred EEEEeccc
Confidence 99999875
No 225
>KOG2227|consensus
Probab=98.91 E-value=7e-08 Score=99.42 Aligned_cols=236 Identities=17% Similarity=0.200 Sum_probs=145.7
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc----cC-ceEEeeccchhhh--
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC----NA-TFFSISAASLTSK-- 300 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~----~~-~fv~i~~s~l~~~-- 300 (502)
..+.|.+..+..+++++..... ...+..+.+.|-||||||.+...+-... .. ..+++||..+...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle--------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE--------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh--------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 5689999999999999855432 2446789999999999999998776655 22 4488999865421
Q ss_pred --------h----h-hhhHHHHHHHHHH-HHhc-CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCc
Q psy2637 301 --------Y----V-GQGEKLVRALFAM-AREL-QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHR 365 (502)
Q Consensus 301 --------~----~-g~~~~~~~~lf~~-a~~~-~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~ 365 (502)
+ . +.........|+. ..+. .+-++++||+|.|....+. .+..+..+...+..+
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~------------vLy~lFewp~lp~sr 289 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT------------VLYTLFEWPKLPNSR 289 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc------------eeeeehhcccCCcce
Confidence 1 0 0011112233332 2222 3569999999999743221 122223344455678
Q ss_pred EEEEEEcCCCCCCcHHHHc---c---ccceeeecCCCHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHhcCCCCHHHHHHH
Q psy2637 366 LLVMGATNRPQELDEAVLR---R---FSKRIYVTLPDSKTRKSLLEKLLNKHGNP-LSQLELDAVAKLTEGYSGSDLTNL 438 (502)
Q Consensus 366 v~vIaaTN~~~~l~~~l~r---R---f~~~I~i~~P~~~er~~il~~~l~~~~~~-l~~~~l~~la~~t~g~s~~dL~~L 438 (502)
+++||.+|..+.-|.-+-| | -..++.|++++.++..+|+...+...... +.+..++..|+...|.|| |++.+
T Consensus 290 ~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRka 368 (529)
T KOG2227|consen 290 IILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKA 368 (529)
T ss_pred eeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHH
Confidence 9999999987654433333 2 23589999999999999999988764332 334578888999988888 55544
Q ss_pred ---HHHHHhhhHHhhhhh---hhhhhcc-cCCCcccHHHHHHHHHhhcCCCCH
Q psy2637 439 ---AKDAALGPIRELNAD---QVIKVDL-KSVRNISYRDFLESLKRIRRSVSP 484 (502)
Q Consensus 439 ---~~~a~~~airel~~~---~~~~v~~-~~~~~It~~d~~~al~~~~~s~~~ 484 (502)
|+.|.--+-.+.+.. ....+.. .....|..+++..++..+..+...
T Consensus 369 Ldv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~ 421 (529)
T KOG2227|consen 369 LDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPSA 421 (529)
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccChhh
Confidence 444433332222111 0011111 112456678888777766554433
No 226
>PRK08116 hypothetical protein; Validated
Probab=98.87 E-value=2.4e-08 Score=99.16 Aligned_cols=123 Identities=18% Similarity=0.262 Sum_probs=72.2
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhh----hHHHHHHHHHHHHhcCCeEEEEcCCcchh
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQ----GEKLVRALFAMARELQPSIIFIDEVDSVL 333 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~----~~~~~~~lf~~a~~~~p~iLfLDEId~L~ 333 (502)
+.+++|+|++|||||+||.++++++ +.+++.++..++...+... .......+++.. ....+|+|||++.-.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC
Confidence 4579999999999999999999986 6788888877765543221 111112233332 234699999996431
Q ss_pred cccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC-CC----CcHHHHccc---cceeeecCCCH
Q psy2637 334 SERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP-QE----LDEAVLRRF---SKRIYVTLPDS 397 (502)
Q Consensus 334 ~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~-~~----l~~~l~rRf---~~~I~i~~P~~ 397 (502)
. .+. .+..+...++...... ..+|.|||.+ .. ++..+.+|+ ...|.+.-|+.
T Consensus 192 ~------t~~---~~~~l~~iin~r~~~~---~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 D------TEW---AREKVYNIIDSRYRKG---LPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred C------CHH---HHHHHHHHHHHHHHCC---CCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 1 111 1223333333322221 2466688865 33 456777774 23456666654
No 227
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.87 E-value=9.3e-08 Score=113.17 Aligned_cols=222 Identities=15% Similarity=0.180 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHhcC---CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcC
Q psy2637 181 ERAQRLQEKMKNNLKMAKERLSILSVDSKLAQVVLDEILEG---GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGL 257 (502)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~ 257 (502)
+++++|++.+.............+..+.++.+.+..++... .+...+++++|.+..++++..++...
T Consensus 134 ~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~---------- 203 (1153)
T PLN03210 134 DEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE---------- 203 (1153)
T ss_pred hHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----------
Confidence 56778888888777766655544555667777777777653 34556889999999999998887322
Q ss_pred CCCCcceEEecCCCCcHHHHHHHHHHHccCce---EEeeccchh---hhhh-----------hhhHHHHH----------
Q psy2637 258 RTPSRGLLLFGPPGNGKTMLARAVATACNATF---FSISAASLT---SKYV-----------GQGEKLVR---------- 310 (502)
Q Consensus 258 ~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~i~~s~l~---~~~~-----------g~~~~~~~---------- 310 (502)
......+-|+|++|+||||+|+++++.....| +.++...+. ..+. ......+.
T Consensus 204 ~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~ 283 (1153)
T PLN03210 204 SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI 283 (1153)
T ss_pred cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCccc
Confidence 12346688999999999999999988774332 111110000 0000 00000000
Q ss_pred ---HHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHcccc
Q psy2637 311 ---ALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFS 387 (502)
Q Consensus 311 ---~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~ 387 (502)
+.+...-..++.+|+||+++.. . ....+....+ ..+...+||.||.....+.. ...+
T Consensus 284 ~~~~~~~~~L~~krvLLVLDdv~~~---------~----~l~~L~~~~~----~~~~GsrIIiTTrd~~vl~~---~~~~ 343 (1153)
T PLN03210 284 YHLGAMEERLKHRKVLIFIDDLDDQ---------D----VLDALAGQTQ----WFGSGSRIIVITKDKHFLRA---HGID 343 (1153)
T ss_pred CCHHHHHHHHhCCeEEEEEeCCCCH---------H----HHHHHHhhCc----cCCCCcEEEEEeCcHHHHHh---cCCC
Confidence 1112222345679999999743 0 1111211111 11122456667765322211 1345
Q ss_pred ceeeecCCCHHHHHHHHHHHHhhcCCCCCH--HHHHHHHHhcCCCCH
Q psy2637 388 KRIYVTLPDSKTRKSLLEKLLNKHGNPLSQ--LELDAVAKLTEGYSG 432 (502)
Q Consensus 388 ~~I~i~~P~~~er~~il~~~l~~~~~~l~~--~~l~~la~~t~g~s~ 432 (502)
.++.+..|+.++..+++..++.....+..+ ....++++.+.|.+-
T Consensus 344 ~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPL 390 (1153)
T PLN03210 344 HIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPL 390 (1153)
T ss_pred eEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcH
Confidence 688999999999999998887543322111 123456677777654
No 228
>KOG0741|consensus
Probab=98.86 E-value=5.1e-08 Score=101.35 Aligned_cols=145 Identities=27% Similarity=0.368 Sum_probs=96.1
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhh-hhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVG-QGEKLVRALFAMARELQPSIIFIDEVDSVLSERK 337 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g-~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~ 337 (502)
.+-.++||.||||+|||.||..+|..++.||+.+-..+-+-.+.+ +.-..+...|+.|+.+.-++|++|+|+.|..-.+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vp 615 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVP 615 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccc
Confidence 345789999999999999999999999999998755443322222 2234568899999998889999999999864432
Q ss_pred cChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcH-HHHccccceeeecCCCH-HHHHHHHH
Q psy2637 338 EGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDE-AVLRRFSKRIYVTLPDS-KTRKSLLE 405 (502)
Q Consensus 338 ~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~-~l~rRf~~~I~i~~P~~-~er~~il~ 405 (502)
-+. ..+.-+++.|+..+.... ..+.+.+|++||...+-+.. ++...|+.++.++..+. ++..+++.
T Consensus 616 IGP-RfSN~vlQaL~VllK~~p-pkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 616 IGP-RFSNLVLQALLVLLKKQP-PKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred cCc-hhhHHHHHHHHHHhccCC-CCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHH
Confidence 222 223334444555554322 22246788888876543332 45567877777776543 55555553
No 229
>PRK12377 putative replication protein; Provisional
Probab=98.86 E-value=4.6e-08 Score=95.77 Aligned_cols=98 Identities=16% Similarity=0.265 Sum_probs=59.6
Q ss_pred CCCCccccc----ChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeecc
Q psy2637 223 SPVQWQDIA----GQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAA 295 (502)
Q Consensus 223 ~~~~~~~ii----G~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s 295 (502)
...+|+++. |+..+......++. .+.....+++|+||||||||+||.+|++.+ +..++.++..
T Consensus 69 ~~~tFdnf~~~~~~~~~a~~~a~~~a~----------~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 69 RKCSFANYQVQNDGQRYALSQAKSIAD----------ELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred ccCCcCCcccCChhHHHHHHHHHHHHH----------HHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 344677765 33344444444442 111234689999999999999999999988 5666777776
Q ss_pred chhhhhhhhhHH--HHHHHHHHHHhcCCeEEEEcCCcch
Q psy2637 296 SLTSKYVGQGEK--LVRALFAMARELQPSIIFIDEVDSV 332 (502)
Q Consensus 296 ~l~~~~~g~~~~--~~~~lf~~a~~~~p~iLfLDEId~L 332 (502)
++.......... ....+++.. ....+|+|||++..
T Consensus 139 ~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 139 DVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 665533221100 011222222 35579999999765
No 230
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.83 E-value=1.8e-07 Score=91.45 Aligned_cols=69 Identities=23% Similarity=0.335 Sum_probs=48.7
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhhh---HHHHHHHHHHHHhcCCeEEEEcCCcch
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQG---EKLVRALFAMARELQPSIIFIDEVDSV 332 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~~---~~~~~~lf~~a~~~~p~iLfLDEId~L 332 (502)
.+++|+|+||||||+|+.+++..+ +..++.++.+++...+.+.. ......+++.. ..+.+|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 589999999999999999999988 66777777777765433221 11112333332 24679999999875
No 231
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=1.8e-07 Score=94.74 Aligned_cols=166 Identities=17% Similarity=0.139 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC-----------------------ce
Q psy2637 233 QEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA-----------------------TF 289 (502)
Q Consensus 233 ~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~-----------------------~f 289 (502)
+....+.+...+... ..+..+||+||.|+||+++|+++|+.+.. .|
T Consensus 8 l~~~~~~l~~~~~~~-----------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 8 LVPVWQNWKAGLDAG-----------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 345666666665322 23578999999999999999999997721 11
Q ss_pred EEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCc
Q psy2637 290 FSISAASLTSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHR 365 (502)
Q Consensus 290 v~i~~s~l~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~ 365 (502)
+.+.... .++. ..-+.++.+.+.+.. ....|++||++|.|. ....+.|+..++ .++.+
T Consensus 77 ~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLE----EPp~~ 138 (319)
T PRK06090 77 HVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN-----------ESASNALLKTLE----EPAPN 138 (319)
T ss_pred EEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhhC-----------HHHHHHHHHHhc----CCCCC
Confidence 1121110 0000 112233444444332 234699999999883 234566777765 45677
Q ss_pred EEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHH
Q psy2637 366 LLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLT 436 (502)
Q Consensus 366 v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~ 436 (502)
+++|..|+.++.+.+.+++|+. .+.|+.|+.++..+.+.. .+.. ....++..+.|-....+.
T Consensus 139 t~fiL~t~~~~~lLpTI~SRCq-~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~ 200 (319)
T PRK06090 139 CLFLLVTHNQKRLLPTIVSRCQ-QWVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLA 200 (319)
T ss_pred eEEEEEECChhhChHHHHhcce-eEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHH
Confidence 8999999999999999999996 899999999888877643 2222 123445556665444443
No 232
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=3.6e-08 Score=100.69 Aligned_cols=131 Identities=17% Similarity=0.193 Sum_probs=89.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCceE---Eeeccchh-----------hh-hh----------------------
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATFF---SISAASLT-----------SK-YV---------------------- 302 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv---~i~~s~l~-----------~~-~~---------------------- 302 (502)
.+..+||+||+|+||+++|+.+|+.+....- .-.|+... +- ++
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 3678999999999999999999998743210 01111110 00 00
Q ss_pred -----------hhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEE
Q psy2637 303 -----------GQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLL 367 (502)
Q Consensus 303 -----------g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~ 367 (502)
...-+.++.+.+.+.. ....|++||++|.|. ....+.||..++ .++.+++
T Consensus 100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLE----EPp~~t~ 164 (342)
T PRK06964 100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-----------VAAANALLKTLE----EPPPGTV 164 (342)
T ss_pred cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-----------HHHHHHHHHHhc----CCCcCcE
Confidence 0111234444444332 223599999999883 234566777776 4567789
Q ss_pred EEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHH
Q psy2637 368 VMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEK 406 (502)
Q Consensus 368 vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~ 406 (502)
+|.+|+.++.+.+.+++|+. .+.|++|+.++..+.+..
T Consensus 165 fiL~t~~~~~LLpTI~SRcq-~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 165 FLLVSARIDRLLPTILSRCR-QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEEECChhhCcHHHHhcCE-EEEecCCCHHHHHHHHHH
Confidence 99999999999999999995 899999999988887754
No 233
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.73 E-value=2.4e-08 Score=109.06 Aligned_cols=175 Identities=26% Similarity=0.339 Sum_probs=96.1
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcC-CCCCcceEEecCCCCcHHHHHHHHHHHccCceEEe-ec---cchhh----
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGL-RTPSRGLLLFGPPGNGKTMLARAVATACNATFFSI-SA---ASLTS---- 299 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~-~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i-~~---s~l~~---- 299 (502)
.|.|++.+|+.+.-.+...... .+-.+. -...-+|||.|.||||||.+.+.+++.+...++.- .+ ..+..
T Consensus 287 sIyG~e~VKkAilLqLfgGv~k-~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~r 365 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVKK-NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVR 365 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCcc-cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEE
Confidence 5889999999987665332111 000011 12346899999999999999999999875443321 11 11111
Q ss_pred -hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC--
Q psy2637 300 -KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ-- 376 (502)
Q Consensus 300 -~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~-- 376 (502)
...|++. .-.+.+-.| .+||+.|||+|.|........+++.. ++.+-..-.|+....+.++-|+||+|+..
T Consensus 366 d~~tge~~-LeaGALVlA---D~Gv~cIDEfdKm~~~dr~aihEaME--QQtIsIaKAGI~atLnARcsvLAAaNP~~Gr 439 (682)
T COG1241 366 DKVTGEWV-LEAGALVLA---DGGVCCIDEFDKMNEEDRVAIHEAME--QQTISIAKAGITATLNARCSVLAAANPKFGR 439 (682)
T ss_pred ccCCCeEE-EeCCEEEEe---cCCEEEEEeccCCChHHHHHHHHHHH--hcEeeecccceeeecchhhhhhhhhCCCCCc
Confidence 1111000 001111122 34899999999883321111111111 11111111244555566788999999764
Q ss_pred -----------CCcHHHHccccceeee-cCCCHHHHHHHHHHHHhh
Q psy2637 377 -----------ELDEAVLRRFSKRIYV-TLPDSKTRKSLLEKLLNK 410 (502)
Q Consensus 377 -----------~l~~~l~rRf~~~I~i-~~P~~~er~~il~~~l~~ 410 (502)
++++++++|||..+.+ ..|+.+.-..+..+.+..
T Consensus 440 yd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 440 YDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred CCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHH
Confidence 5789999999955433 336665555555555544
No 234
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.72 E-value=9.6e-08 Score=91.67 Aligned_cols=182 Identities=21% Similarity=0.316 Sum_probs=94.8
Q ss_pred cChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC---ceEEeec-cchh----hhh-
Q psy2637 231 AGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA---TFFSISA-ASLT----SKY- 301 (502)
Q Consensus 231 iG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~---~fv~i~~-s~l~----~~~- 301 (502)
+|.+...+.|.+++.. .+...++|+||.|+|||++++.+.+.... ..+.+++ .... ...
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 5777777777776521 23578999999999999999999998832 1111111 1100 000
Q ss_pred -----------------------------hhhhHHHHHHHHHHHHhc-CCeEEEEcCCcchhcccccChhHHHHHHHHHH
Q psy2637 302 -----------------------------VGQGEKLVRALFAMAREL-QPSIIFIDEVDSVLSERKEGEHEASRRLKTEF 351 (502)
Q Consensus 302 -----------------------------~g~~~~~~~~lf~~a~~~-~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~l 351 (502)
.......+..+++..... ...+|+|||++.+. ..... .......+
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~-~~~~~----~~~~~~~l 144 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLA-IASEE----DKDFLKSL 144 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG-BCTTT----THHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh-hcccc----hHHHHHHH
Confidence 011223345555555443 34799999999996 11111 11222333
Q ss_pred HHHhccCCCCCCCcEEEEEEcCCC-----CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCC--CHHHHHHHH
Q psy2637 352 LLEFDGLHSNSEHRLLVMGATNRP-----QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPL--SQLELDAVA 424 (502)
Q Consensus 352 l~~l~g~~~~~~~~v~vIaaTN~~-----~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l--~~~~l~~la 424 (502)
...++....... ..+|++++... ..-...+..|+. .+.+++.+.++..+++...+... ..+ ++.+++.+.
T Consensus 145 ~~~~~~~~~~~~-~~~v~~~S~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~ 221 (234)
T PF01637_consen 145 RSLLDSLLSQQN-VSIVITGSSDSLMEEFLDDKSPLFGRFS-HIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIY 221 (234)
T ss_dssp HHHHHH----TT-EEEEEEESSHHHHHHTT-TTSTTTT----EEEE----HHHHHHHHHHHHHCC-------HHHHHHHH
T ss_pred HHHHhhccccCC-ceEEEECCchHHHHHhhcccCccccccc-eEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHH
Confidence 333333222222 23334444321 112234556886 49999999999999999988776 444 889999999
Q ss_pred HhcCCCCH
Q psy2637 425 KLTEGYSG 432 (502)
Q Consensus 425 ~~t~g~s~ 432 (502)
..+.|.++
T Consensus 222 ~~~gG~P~ 229 (234)
T PF01637_consen 222 SLTGGNPR 229 (234)
T ss_dssp HHHTT-HH
T ss_pred HHhCCCHH
Confidence 99998654
No 235
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.70 E-value=5.3e-07 Score=97.10 Aligned_cols=206 Identities=19% Similarity=0.272 Sum_probs=120.7
Q ss_pred HhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEee-ccc
Q psy2637 218 ILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSIS-AAS 296 (502)
Q Consensus 218 ~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~-~s~ 296 (502)
+++.+.|.+.++++.+..-.++|+.++..... + ..+.+-+||+||+|||||++++.+|++++..+.+.. ...
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~------~-~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~ 81 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS------G-SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVS 81 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhc------c-CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCC
Confidence 34567888999999999888999998853211 0 122346788999999999999999999987666532 222
Q ss_pred hh------hhhhh----------hhHHHHHHH-HHHHH-----------hcCCeEEEEcCCcchhcccccChhHHHHHHH
Q psy2637 297 LT------SKYVG----------QGEKLVRAL-FAMAR-----------ELQPSIIFIDEVDSVLSERKEGEHEASRRLK 348 (502)
Q Consensus 297 l~------~~~~g----------~~~~~~~~l-f~~a~-----------~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~ 348 (502)
.. ..+.+ .... ...+ +..++ ..++.||+|||+-.++... . .++.
T Consensus 82 ~~~~~~~~~d~~s~~~~~~~f~sq~~~-F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~----~---~~f~ 153 (519)
T PF03215_consen 82 FRESDNQEDDFESDFNKFDEFLSQSDK-FSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD----T---SRFR 153 (519)
T ss_pred ccccccccccccccccccccccchhhh-hccccccccccccccccCCCcCCCceEEEeeccccccchh----H---HHHH
Confidence 10 01111 1110 1111 11111 1235699999996543221 1 2233
Q ss_pred HHHHHHhccCCCCCCC-cEEEEEE-cC------CC--------CCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhh
Q psy2637 349 TEFLLEFDGLHSNSEH-RLLVMGA-TN------RP--------QELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNK 410 (502)
Q Consensus 349 ~~ll~~l~g~~~~~~~-~v~vIaa-TN------~~--------~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~ 410 (502)
..|...+... .. +++||.+ +. .. ..+++.++. ++ ..|.|.+-+..-...-+...+..
T Consensus 154 ~~L~~~l~~~----~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 154 EALRQYLRSS----RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKK 228 (519)
T ss_pred HHHHHHHHcC----CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 3233333221 11 4666666 11 11 135566666 45 37899998888888777777765
Q ss_pred c-----CC-CC--CHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy2637 411 H-----GN-PL--SQLELDAVAKLTEGYSGSDLTNLAKDAA 443 (502)
Q Consensus 411 ~-----~~-~l--~~~~l~~la~~t~g~s~~dL~~L~~~a~ 443 (502)
. +. .. ....++.|+..+.|.-..+|.+|.-.+.
T Consensus 229 E~~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 229 EARSSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred HhhhhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 4 11 11 2234888988888877777776655544
No 236
>PRK08181 transposase; Validated
Probab=98.66 E-value=1.2e-07 Score=94.04 Aligned_cols=71 Identities=27% Similarity=0.376 Sum_probs=48.9
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhhhH-HHHHHHHHHHHhcCCeEEEEcCCcchh
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQGE-KLVRALFAMARELQPSIIFIDEVDSVL 333 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~~~-~~~~~lf~~a~~~~p~iLfLDEId~L~ 333 (502)
..+++|+||||||||+||.+++.++ +..++.++..++...+..... ......+... .++.+|+|||++...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 4689999999999999999999865 667777777776654322111 1112233322 345799999998764
No 237
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.65 E-value=1.7e-07 Score=95.56 Aligned_cols=71 Identities=20% Similarity=0.398 Sum_probs=48.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhhh---HHHHHHHHHHHHhcCCeEEEEcCCcch
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQG---EKLVRALFAMARELQPSIIFIDEVDSV 332 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~~---~~~~~~lf~~a~~~~p~iLfLDEId~L 332 (502)
...+++|+||+|||||+||.++|+++ +..++.++..++...+.... .......++.. ....+|+|||++..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e 258 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTE 258 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCC
Confidence 34789999999999999999999987 66777787777655432210 00001112222 24579999999765
No 238
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=2.4e-07 Score=94.41 Aligned_cols=130 Identities=17% Similarity=0.216 Sum_probs=84.7
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccC-------------------------ceEEeeccch---hhhh-hhhhHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNA-------------------------TFFSISAASL---TSKY-VGQGEKLVR 310 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~-------------------------~fv~i~~s~l---~~~~-~g~~~~~~~ 310 (502)
.+..+||+||+|+|||++|+.+|+.+.. .|+.++...- .++. ....-+.++
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 4577999999999999999999998631 1233322110 0000 001223345
Q ss_pred HHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccc
Q psy2637 311 ALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRF 386 (502)
Q Consensus 311 ~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf 386 (502)
.+.+.+.. ....|+++|+++.|.. ...+.++..++... ..+.+|.+|+.++.+.+.+.+|+
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~-----------~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~SRc 164 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNL-----------QAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKSRC 164 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCH-----------HHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHHHh
Confidence 55555543 2346999999998832 23445555555331 23567778888889999999999
Q ss_pred cceeeecCCCHHHHHHHHH
Q psy2637 387 SKRIYVTLPDSKTRKSLLE 405 (502)
Q Consensus 387 ~~~I~i~~P~~~er~~il~ 405 (502)
. .+.|++|+.++..+.+.
T Consensus 165 ~-~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 165 R-KMVLPAPSHEEALAYLR 182 (325)
T ss_pred h-hhcCCCCCHHHHHHHHH
Confidence 5 89999999998877764
No 239
>KOG1970|consensus
Probab=98.62 E-value=2.3e-06 Score=89.86 Aligned_cols=203 Identities=17% Similarity=0.207 Sum_probs=111.1
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeecc------
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAA------ 295 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s------ 295 (502)
..|...+++.-+..-+.+|++|+... .. -.-..+.+-+||+||+|+||||+++.++++++..+++-+-.
T Consensus 76 y~P~t~eeLAVHkkKI~eVk~WL~~~---~~--~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~ 150 (634)
T KOG1970|consen 76 YKPRTLEELAVHKKKISEVKQWLKQV---AE--FTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEP 150 (634)
T ss_pred cCcccHHHHhhhHHhHHHHHHHHHHH---HH--hccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccccc
Confidence 44445566655555666666666300 00 01112345688999999999999999999998776654311
Q ss_pred -chh-------hhhhhhhHHHHHHHHHHHH------------hcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHh
Q psy2637 296 -SLT-------SKYVGQGEKLVRALFAMAR------------ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEF 355 (502)
Q Consensus 296 -~l~-------~~~~g~~~~~~~~lf~~a~------------~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l 355 (502)
.+. ..+...... .....+.+. ...+.+|++||+-..+.. . ..+.+.+.|..+
T Consensus 151 ~~~h~~t~~~~~~~~s~L~~-fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~------d-~~~~f~evL~~y 222 (634)
T KOG1970|consen 151 ENLHNETSFLMFPYQSQLAV-FESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR------D-DSETFREVLRLY 222 (634)
T ss_pred ccccccchhcccchhhHHHH-HHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh------h-hHHHHHHHHHHH
Confidence 000 011111111 111112221 123458999999554322 1 122222333333
Q ss_pred ccCCCCCCCcEEE-EEEcCCCCCCcHHHHc--------cccceeeecCCCHHHHHHHHHHHHhhcCCCCC------HHHH
Q psy2637 356 DGLHSNSEHRLLV-MGATNRPQELDEAVLR--------RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLS------QLEL 420 (502)
Q Consensus 356 ~g~~~~~~~~v~v-IaaTN~~~~l~~~l~r--------Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~------~~~l 420 (502)
... ...++++ |.-++.++.-++..+. |+. .|.|.+-...-....+...+.....+.+ ...+
T Consensus 223 ~s~---g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v 298 (634)
T KOG1970|consen 223 VSI---GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEV 298 (634)
T ss_pred Hhc---CCCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHH
Confidence 221 1222333 3223333433332221 674 7899998888888899988888777666 5667
Q ss_pred HHHHHhcCCCCHHHHHHHHHH
Q psy2637 421 DAVAKLTEGYSGSDLTNLAKD 441 (502)
Q Consensus 421 ~~la~~t~g~s~~dL~~L~~~ 441 (502)
+.++..+.|.-..+|..|.--
T Consensus 299 ~~i~~~s~GDIRsAInsLQls 319 (634)
T KOG1970|consen 299 ELICQGSGGDIRSAINSLQLS 319 (634)
T ss_pred HHHHHhcCccHHHHHhHhhhh
Confidence 778877777666666655443
No 240
>KOG0478|consensus
Probab=98.59 E-value=3.8e-07 Score=97.58 Aligned_cols=176 Identities=20% Similarity=0.239 Sum_probs=95.5
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcC-CCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeec--cchh--hhhhh
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGL-RTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISA--ASLT--SKYVG 303 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~-~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~--s~l~--~~~~g 303 (502)
.|.|++.+|+.+.-.+.-... .+..... -...-+|||+|.||||||.+.+.+|+-+..-.+. ++ +.-. ..|+-
T Consensus 430 sIye~edvKkglLLqLfGGt~-k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTR-KEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhcCCc-ccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCccchhcceeeEE
Confidence 588999999988766533222 1111111 1234689999999999999999999987433221 11 0000 00110
Q ss_pred hhHHHHHHHHHH--HHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC-----
Q psy2637 304 QGEKLVRALFAM--ARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ----- 376 (502)
Q Consensus 304 ~~~~~~~~lf~~--a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~----- 376 (502)
......+-+++. .--...|+..|||+|+|........++.+. ++++-....|+...-+.+.-|+|++|+..
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvME--QQTvSIAKAGII~sLNAR~SVLAaANP~~skynp 585 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVME--QQTLSIAKAGIIASLNARCSVLAAANPIRSKYNP 585 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHH--HhhhhHhhcceeeeccccceeeeeeccccccCCC
Confidence 000000111110 001234899999999993322211111111 12222334466666667788999999542
Q ss_pred --------CCcHHHHcccccee-eecCCCHHHHHHHHHHHH
Q psy2637 377 --------ELDEAVLRRFSKRI-YVTLPDSKTRKSLLEKLL 408 (502)
Q Consensus 377 --------~l~~~l~rRf~~~I-~i~~P~~~er~~il~~~l 408 (502)
.|++.+++||+.++ -+..|+...=+.+..++.
T Consensus 586 ~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 586 NKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred CCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHH
Confidence 68899999998432 344455553344444443
No 241
>PF13173 AAA_14: AAA domain
Probab=98.59 E-value=1.8e-07 Score=82.21 Aligned_cols=118 Identities=18% Similarity=0.262 Sum_probs=69.9
Q ss_pred cceEEecCCCCcHHHHHHHHHHHcc--CceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACN--ATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG 339 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~--~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~ 339 (502)
..++|+||.|+|||++++.+++... ..++.+++.+.......... ....+.+. ....+.+||||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLEL-IKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHh-hccCCcEEEEehhhhhc------
Confidence 5689999999999999999998875 77888888766542111111 11222222 11245799999998772
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC----CCcHHHHccccceeeecCCCHHH
Q psy2637 340 EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ----ELDEAVLRRFSKRIYVTLPDSKT 399 (502)
Q Consensus 340 ~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~----~l~~~l~rRf~~~I~i~~P~~~e 399 (502)
.. ......+ .+ .. .++.||.|+.... .....+..|.. .+++.+.+.+|
T Consensus 75 --~~-~~~lk~l---~d----~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 --DW-EDALKFL---VD----NG-PNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred --cH-HHHHHHH---HH----hc-cCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 11 1111112 12 11 2345555555432 23344555774 78888888776
No 242
>KOG0480|consensus
Probab=98.57 E-value=2.5e-07 Score=98.21 Aligned_cols=178 Identities=20% Similarity=0.284 Sum_probs=100.8
Q ss_pred cccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEe----eccchhhhh
Q psy2637 227 WQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSI----SAASLTSKY 301 (502)
Q Consensus 227 ~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i----~~s~l~~~~ 301 (502)
+..|.|++.+|.-|.-.+.-...... ..+.. ....+|+|+|.|||||+-+.++++.-+...++.. +.+.+....
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a-~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaV 422 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSA-GEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAV 422 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccC-CCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEE
Confidence 45799999999998766532211111 01221 3456899999999999999999998876554421 111111111
Q ss_pred hhhhH--HH--HHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC-
Q psy2637 302 VGQGE--KL--VRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ- 376 (502)
Q Consensus 302 ~g~~~--~~--~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~- 376 (502)
+...+ .. -.+.+-.|. .||..|||+|+|..+.+...++++. ++.+-..-.|....-+.+.-||||+|+..
T Consensus 423 vkD~esgdf~iEAGALmLAD---nGICCIDEFDKMd~~dqvAihEAME--QQtISIaKAGv~aTLnARtSIlAAANPv~G 497 (764)
T KOG0480|consen 423 VKDEESGDFTIEAGALMLAD---NGICCIDEFDKMDVKDQVAIHEAME--QQTISIAKAGVVATLNARTSILAAANPVGG 497 (764)
T ss_pred EecCCCCceeeecCcEEEcc---CceEEechhcccChHhHHHHHHHHH--hheehheecceEEeecchhhhhhhcCCcCC
Confidence 10000 00 011111223 3899999999994322111111111 11111112244444456677899999753
Q ss_pred ------------CCcHHHHccccce-eeecCCCHHHHHHHHHHHHhh
Q psy2637 377 ------------ELDEAVLRRFSKR-IYVTLPDSKTRKSLLEKLLNK 410 (502)
Q Consensus 377 ------------~l~~~l~rRf~~~-I~i~~P~~~er~~il~~~l~~ 410 (502)
.+.+++.+||+.. |-++-|++..-..+-++.+..
T Consensus 498 hYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 498 HYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred ccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 5779999999854 455667777777776666654
No 243
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.56 E-value=1.5e-07 Score=93.57 Aligned_cols=138 Identities=20% Similarity=0.412 Sum_probs=80.8
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccC-c--eEEeeccchhhhhhhhhHHHHHHHHHHH----H-------hcCCeEEEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNA-T--FFSISAASLTSKYVGQGEKLVRALFAMA----R-------ELQPSIIFI 326 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~-~--fv~i~~s~l~~~~~g~~~~~~~~lf~~a----~-------~~~p~iLfL 326 (502)
..++||+||+|||||++++..-+.+.. . ...++++..... ..++.+++.. . ..+..|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts------~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTS------NQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHH------HHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCH------HHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 589999999999999999988776632 2 234455443221 1122222111 0 112359999
Q ss_pred cCCcchhcccccChhHHHHHHHHHHHHHh---ccCCCCCC------CcEEEEEEcCCCC---CCcHHHHccccceeeecC
Q psy2637 327 DEVDSVLSERKEGEHEASRRLKTEFLLEF---DGLHSNSE------HRLLVMGATNRPQ---ELDEAVLRRFSKRIYVTL 394 (502)
Q Consensus 327 DEId~L~~~~~~~~~~~~~~~~~~ll~~l---~g~~~~~~------~~v~vIaaTN~~~---~l~~~l~rRf~~~I~i~~ 394 (502)
||++.-.++..+.+. . .++++.+ .|...... .++.+|||+++.. .+++.+.|.|. ++.++.
T Consensus 107 DDlN~p~~d~ygtq~--~----iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~-i~~~~~ 179 (272)
T PF12775_consen 107 DDLNMPQPDKYGTQP--P----IELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFN-ILNIPY 179 (272)
T ss_dssp ETTT-S---TTS--H--H----HHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEE-EEE---
T ss_pred cccCCCCCCCCCCcC--H----HHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheE-EEEecC
Confidence 999876554332221 1 1344332 23333221 4678899988643 58889999996 999999
Q ss_pred CCHHHHHHHHHHHHhhc
Q psy2637 395 PDSKTRKSLLEKLLNKH 411 (502)
Q Consensus 395 P~~~er~~il~~~l~~~ 411 (502)
|+.++...|+..++..+
T Consensus 180 p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 180 PSDESLNTIFSSILQSH 196 (272)
T ss_dssp -TCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhhh
Confidence 99999999999888754
No 244
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=98.53 E-value=3.9e-08 Score=89.99 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=51.7
Q ss_pred cccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 111 VEMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 111 ~~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
+-||+++|+||..++.+.....++|++|++ |+++.+|++||.|| |||+||++..
T Consensus 56 vrMPg~sGlelq~~L~~~~~~~PVIfiTGh-------gDIpmaV~AmK~GAvDFLeKP~~~q 110 (202)
T COG4566 56 VRMPGMSGLELQDRLAERGIRLPVIFLTGH-------GDIPMAVQAMKAGAVDFLEKPFSEQ 110 (202)
T ss_pred cCCCCCchHHHHHHHHhcCCCCCEEEEeCC-------CChHHHHHHHHcchhhHHhCCCchH
Confidence 349999999999999999999999999999 99999999999999 9999999984
No 245
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=3.5e-06 Score=84.00 Aligned_cols=119 Identities=16% Similarity=0.172 Sum_probs=77.3
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccch-----hhh--h--hh----hhHHHHHHHHHHHHh----cCCeE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAASL-----TSK--Y--VG----QGEKLVRALFAMARE----LQPSI 323 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l-----~~~--~--~g----~~~~~~~~lf~~a~~----~~p~i 323 (502)
+...||+||+|+||+.+|.++|+.+.+.--.-.|..+ ++- . .+ ..-+.++.+.+.+.. ....|
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 5778999999999999999999987321000011000 000 0 00 112233444444332 23369
Q ss_pred EEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCC
Q psy2637 324 IFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLP 395 (502)
Q Consensus 324 LfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P 395 (502)
++||++|.|.. ...+.|+..++ .++.++++|..|+.++.+.+.+++|+. .+.|+++
T Consensus 99 ~ii~~ad~mt~-----------~AaNaLLK~LE----EPp~~~~fiL~~~~~~~ll~TI~SRcq-~~~~~~~ 154 (290)
T PRK05917 99 YIIHEADRMTL-----------DAISAFLKVLE----DPPQHGVIILTSAKPQRLPPTIRSRSL-SIHIPME 154 (290)
T ss_pred EEEechhhcCH-----------HHHHHHHHHhh----cCCCCeEEEEEeCChhhCcHHHHhcce-EEEccch
Confidence 99999998832 24556777665 456678999999999999999999995 7888765
No 246
>PRK06526 transposase; Provisional
Probab=98.46 E-value=3.2e-07 Score=90.34 Aligned_cols=72 Identities=21% Similarity=0.333 Sum_probs=46.0
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhhh-HHHHHHHHHHHHhcCCeEEEEcCCcchh
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQG-EKLVRALFAMARELQPSIIFIDEVDSVL 333 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~~-~~~~~~lf~~a~~~~p~iLfLDEId~L~ 333 (502)
...+++|+||||||||++|.+++.++ +..+..+++.++........ .......+.. -.++.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC
Confidence 35789999999999999999999876 55555555555544322111 0111112222 1345799999998763
No 247
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.45 E-value=1e-06 Score=77.11 Aligned_cols=73 Identities=25% Similarity=0.444 Sum_probs=47.5
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc--------cCceEEeeccchhh--hhh--------------hhhHHHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC--------NATFFSISAASLTS--KYV--------------GQGEKLVRALFAMA 316 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~--------~~~fv~i~~s~l~~--~~~--------------g~~~~~~~~lf~~a 316 (502)
...++|+||+|+|||++++.+++.. ..+++.+++..... .+. .........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4678999999999999999999987 56777777765441 110 11233334444555
Q ss_pred HhcCCeEEEEcCCcchh
Q psy2637 317 RELQPSIIFIDEVDSVL 333 (502)
Q Consensus 317 ~~~~p~iLfLDEId~L~ 333 (502)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 55555699999999874
No 248
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.45 E-value=3.8e-07 Score=104.31 Aligned_cols=146 Identities=23% Similarity=0.316 Sum_probs=91.0
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh--hhhhh-------hHHHH-HHHHHHHHhcCCeEEEEcCCc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS--KYVGQ-------GEKLV-RALFAMARELQPSIIFIDEVD 330 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~--~~~g~-------~~~~~-~~lf~~a~~~~p~iLfLDEId 330 (502)
.+++||.|.||+|||+++.++|+..|...++||.++-.. ..+|. ++-.. ..-|-.|. .+.+-++|||++
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~am-r~G~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAM-RDGGWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHh-hcCCEEEeehhh
Confidence 478999999999999999999999999999999876543 11111 00000 11122222 234689999997
Q ss_pred chhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC------CCCcHHHHccccceeeecCCCHHHHHHHH
Q psy2637 331 SVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP------QELDEAVLRRFSKRIYVTLPDSKTRKSLL 404 (502)
Q Consensus 331 ~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~------~~l~~~l~rRf~~~I~i~~P~~~er~~il 404 (502)
......-.+....+..--..++.+++... ....+++|.||-|+. ..++..+..||. +|.+...+.++..+|.
T Consensus 1622 LaSQSVlEGLNacLDhR~eayIPEld~~f-~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFs-vV~~d~lt~dDi~~Ia 1699 (4600)
T COG5271 1622 LASQSVLEGLNACLDHRREAYIPELDKTF-DVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFS-VVKMDGLTTDDITHIA 1699 (4600)
T ss_pred hhHHHHHHHHHHHHhhcccccccccccee-eccCCeeeeeecCchhcCCCcccCCHHHhhhhh-eEEecccccchHHHHH
Confidence 55221111111111000011111222111 123568999998875 379999999996 8999999999988888
Q ss_pred HHHHh
Q psy2637 405 EKLLN 409 (502)
Q Consensus 405 ~~~l~ 409 (502)
..+..
T Consensus 1700 ~~~yp 1704 (4600)
T COG5271 1700 NKMYP 1704 (4600)
T ss_pred HhhCC
Confidence 76553
No 249
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.43 E-value=3.9e-08 Score=100.63 Aligned_cols=166 Identities=24% Similarity=0.299 Sum_probs=81.3
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccc-----hhh----
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAAS-----LTS---- 299 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~-----l~~---- 299 (502)
.|.|.+.+|..+.-.+.........-.......-++||.|.||||||.+.+.+++...... .++... +..
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECC
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceecc
Confidence 5889888877765433222111000000012356899999999999999998876654332 222211 111
Q ss_pred -hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc---------cCCCCCCCcEEEE
Q psy2637 300 -KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD---------GLHSNSEHRLLVM 369 (502)
Q Consensus 300 -~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~---------g~~~~~~~~v~vI 369 (502)
...+... .-.+.+-.|.+ ||++|||+|.+... ....++..|+ |.....+.++-|+
T Consensus 104 d~~~~~~~-leaGalvlad~---GiccIDe~dk~~~~-----------~~~~l~eaMEqq~isi~kagi~~~l~ar~svl 168 (331)
T PF00493_consen 104 DPVTGEWV-LEAGALVLADG---GICCIDEFDKMKED-----------DRDALHEAMEQQTISIAKAGIVTTLNARCSVL 168 (331)
T ss_dssp CGGTSSEC-EEE-HHHHCTT---SEEEECTTTT--CH-----------HHHHHHHHHHCSCEEECTSSSEEEEE---EEE
T ss_pred ccccceeE-EeCCchhcccC---ceeeecccccccch-----------HHHHHHHHHHcCeeccchhhhcccccchhhhH
Confidence 1111100 00133334444 89999999988332 1223444443 2222234567899
Q ss_pred EEcCCCC-------------CCcHHHHccccceeee-cCCCHHHHHHHHHHHHhh
Q psy2637 370 GATNRPQ-------------ELDEAVLRRFSKRIYV-TLPDSKTRKSLLEKLLNK 410 (502)
Q Consensus 370 aaTN~~~-------------~l~~~l~rRf~~~I~i-~~P~~~er~~il~~~l~~ 410 (502)
||+|+.. .+++.+++||+.++.+ ..|+.+.-..+..+.+..
T Consensus 169 aa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 169 AAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp EEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred HHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEec
Confidence 9999764 4778899999966554 556665556666655554
No 250
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.41 E-value=1.4e-06 Score=85.92 Aligned_cols=71 Identities=28% Similarity=0.424 Sum_probs=50.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhhhHH-HHH-HHHHHHHhcCCeEEEEcCCcch
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQGEK-LVR-ALFAMARELQPSIIFIDEVDSV 332 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~~~~-~~~-~lf~~a~~~~p~iLfLDEId~L 332 (502)
...+++|+||||||||+||-||++++ +.++..++..++.......... ... .+.... .+..+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 46899999999999999999999988 6778888888877654333221 111 111111 23479999999875
No 251
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.39 E-value=3e-07 Score=85.73 Aligned_cols=71 Identities=25% Similarity=0.461 Sum_probs=46.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhhh-HHHHHHHHHHHHhcCCeEEEEcCCcch
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQG-EKLVRALFAMARELQPSIIFIDEVDSV 332 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~~-~~~~~~lf~~a~~~~p~iLfLDEId~L 332 (502)
.+.+++|+||||||||++|.++++++ +.++..++..++........ .......+.... .+.+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 35789999999999999999999877 67777888877765432211 111122333332 3479999999754
No 252
>KOG2228|consensus
Probab=98.38 E-value=5.4e-06 Score=82.53 Aligned_cols=163 Identities=22% Similarity=0.352 Sum_probs=97.1
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHH---HccCceEEeeccch--hh---
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT---ACNATFFSISAASL--TS--- 299 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~---~~~~~fv~i~~s~l--~~--- 299 (502)
..+.|..+..+.+.+++.... +..-...|++.||.|+|||++....-. +.+..|+.+..... .+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~--------~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTI--------LHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred cceeehHHHHHHHHHHHHHHH--------HhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 457788888888887774321 123467899999999999997765544 34556654433221 11
Q ss_pred ----------------hhhhhhHHHHHHHHHHHHh-----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC
Q psy2637 300 ----------------KYVGQGEKLVRALFAMARE-----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL 358 (502)
Q Consensus 300 ----------------~~~g~~~~~~~~lf~~a~~-----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~ 358 (502)
+..|.....+..+++.... ..+.|.++||+|-..+.. .+.++..+-..
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~-----------rQtllYnlfDi 164 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS-----------RQTLLYNLFDI 164 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch-----------hhHHHHHHHHH
Confidence 1112222222333332221 123455678999875441 12333333333
Q ss_pred CCCCCCcEEEEEEcCCC---CCCcHHHHccccce-eeecCC-CHHHHHHHHHHHHh
Q psy2637 359 HSNSEHRLLVMGATNRP---QELDEAVLRRFSKR-IYVTLP-DSKTRKSLLEKLLN 409 (502)
Q Consensus 359 ~~~~~~~v~vIaaTN~~---~~l~~~l~rRf~~~-I~i~~P-~~~er~~il~~~l~ 409 (502)
......++.||+.|.+. +.+...+.+||.+. |++.++ +..+..++++..+.
T Consensus 165 sqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 165 SQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred HhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 33445678999988775 46678888899865 555554 78888888888774
No 253
>PRK09183 transposase/IS protein; Provisional
Probab=98.37 E-value=1.1e-06 Score=87.01 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=47.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhhh-HHHHHHHHHHHHhcCCeEEEEcCCcch
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQG-EKLVRALFAMARELQPSIIFIDEVDSV 332 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~~-~~~~~~lf~~a~~~~p~iLfLDEId~L 332 (502)
.+.+++|+||||||||++|.+++... +..+..+++.++...+.... ...+...+... ...+.+++|||++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 35789999999999999999998764 55666667666654332111 11122333332 235679999999875
No 254
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.37 E-value=1.8e-06 Score=87.33 Aligned_cols=71 Identities=17% Similarity=0.290 Sum_probs=48.1
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhhhH-HHHHHHHHHHHhcCCeEEEEcCCcch
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQGE-KLVRALFAMARELQPSIIFIDEVDSV 332 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~~~-~~~~~lf~~a~~~~p~iLfLDEId~L 332 (502)
...+++|+||+|||||+||.++++++ +.++..+...++...+..... ......++.. .+..+|+|||++.-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 35789999999999999999999988 566666776666544322211 1112233332 24579999999754
No 255
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.36 E-value=7.7e-06 Score=81.64 Aligned_cols=176 Identities=16% Similarity=0.104 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHH--ccCce---EEeeccchh------hhh-
Q psy2637 234 EVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATA--CNATF---FSISAASLT------SKY- 301 (502)
Q Consensus 234 ~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~i~~s~l~------~~~- 301 (502)
+..+++|.+.+.. .......|.|+|++|+|||++|+.+++. ....| +-++.+.-. ...
T Consensus 2 e~~~~~l~~~L~~----------~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~ 71 (287)
T PF00931_consen 2 EKEIEKLKDWLLD----------NSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQIL 71 (287)
T ss_dssp HHHHHHHHHHHHT----------TTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHH
T ss_pred HHHHHHHHHHhhC----------CCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccc
Confidence 3456666666632 1234577899999999999999999987 32222 222222111 000
Q ss_pred --h----------hhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEE
Q psy2637 302 --V----------GQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVM 369 (502)
Q Consensus 302 --~----------g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vI 369 (502)
. .........+.+ .-..++.+|+||+++... ....+...+.. ...+..||
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~l~~-~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~----~~~~~kil 133 (287)
T PF00931_consen 72 RQLGEPDSSISDPKDIEELQDQLRE-LLKDKRCLLVLDDVWDEE-------------DLEELREPLPS----FSSGSKIL 133 (287)
T ss_dssp HHHTCC-STSSCCSSHHHHHHHHHH-HHCCTSEEEEEEEE-SHH-------------HH-------HC----HHSS-EEE
T ss_pred ccccccccccccccccccccccchh-hhccccceeeeeeecccc-------------ccccccccccc----cccccccc
Confidence 0 011222233333 333457899999997541 11111111111 11235677
Q ss_pred EEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcC---CCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy2637 370 GATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHG---NPLSQLELDAVAKLTEGYSGSDLTNLAK 440 (502)
Q Consensus 370 aaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~---~~l~~~~l~~la~~t~g~s~~dL~~L~~ 440 (502)
.||.... +....-.. ...+.++..+.++-.+++...+.... ....+.....+++.+.| .|-.|..+..
T Consensus 134 vTTR~~~-v~~~~~~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a~ 204 (287)
T PF00931_consen 134 VTTRDRS-VAGSLGGT-DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIAS 204 (287)
T ss_dssp EEESCGG-GGTTHHSC-EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHHH
T ss_pred ccccccc-cccccccc-cccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 6776532 22211112 34789999999999999999876544 11223456788888876 4545555443
No 256
>KOG2170|consensus
Probab=98.36 E-value=9.3e-06 Score=79.77 Aligned_cols=187 Identities=19% Similarity=0.201 Sum_probs=98.7
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-----cCceEEe--eccchhh-h
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-----NATFFSI--SAASLTS-K 300 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~i--~~s~l~~-~ 300 (502)
.+.||.-+++.+...+..-...+. ...|-.+=|+|+|||||..+++.||+.+ ..++|.. ....++. +
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~-----p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN-----PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC-----CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 477998888888877743222111 1223334578999999999999999987 2333321 1111111 1
Q ss_pred hhhh-hHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC-CC
Q psy2637 301 YVGQ-GEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ-EL 378 (502)
Q Consensus 301 ~~g~-~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~-~l 378 (502)
++.. -++....+.+.+...+.+++++||+|.|.+. +...+.-++..-.......-.+.++|.-+|.-. .|
T Consensus 158 ~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~g--------Lld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI 229 (344)
T KOG2170|consen 158 KIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPG--------LLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEI 229 (344)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHh--------HHHHHhhhhccccccccccccceEEEEEcCCcchHH
Confidence 1111 1122233444455566689999999999432 222222333211111111112346666666432 11
Q ss_pred ----------------------cHHHHc-------------------cccceeeecCCCHHHHHHHHHHHHhhcCCCCCH
Q psy2637 379 ----------------------DEAVLR-------------------RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQ 417 (502)
Q Consensus 379 ----------------------~~~l~r-------------------Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~ 417 (502)
.+.+.. +++..|.|-+.+.+....-++..+...+...++
T Consensus 230 ~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~rg~~~d~ 309 (344)
T KOG2170|consen 230 ARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKRGLAPDQ 309 (344)
T ss_pred HHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhcccccch
Confidence 111110 344456666666666667777777666666666
Q ss_pred HHHHHHHHhcC
Q psy2637 418 LELDAVAKLTE 428 (502)
Q Consensus 418 ~~l~~la~~t~ 428 (502)
+.+++++....
T Consensus 310 ~~~erva~~l~ 320 (344)
T KOG2170|consen 310 DFVERVANSLS 320 (344)
T ss_pred HHHHHHHHhhc
Confidence 66666666554
No 257
>KOG0482|consensus
Probab=98.35 E-value=1.4e-06 Score=90.39 Aligned_cols=242 Identities=21% Similarity=0.267 Sum_probs=132.8
Q ss_pred cccChHHHHHHHHHHHhCcCC-ChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEee---------ccch
Q psy2637 229 DIAGQEVAKQALHEMVILPSL-RPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSIS---------AASL 297 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~-~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~---------~s~l 297 (502)
+|.|++++|+.|.-++.-... .+. .+.. ...-+|+|.|.||+.|+-|.+.|.+-.....+..- ++-+
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~--dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVm 420 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPG--DGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVM 420 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCC--CCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhh
Confidence 588999999999877643211 111 1111 23467999999999999999999987644433221 1111
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC-
Q psy2637 298 TSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ- 376 (502)
Q Consensus 298 ~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~- 376 (502)
.....|+..-. .+.+-.|.+ ||..|||+|++........++... ++.+-..-.|+...-+.++-|+||+|+.+
T Consensus 421 kDpvTgEM~LE-GGALVLAD~---GICCIDEfDKM~e~DRtAIHEVME--QQTISIaKAGI~TtLNAR~sILaAANPayG 494 (721)
T KOG0482|consen 421 KDPVTGEMVLE-GGALVLADG---GICCIDEFDKMDESDRTAIHEVME--QQTISIAKAGINTTLNARTSILAAANPAYG 494 (721)
T ss_pred cCCCCCeeEec-cceEEEccC---ceEeehhhhhhhhhhhHHHHHHHH--hhhhhhhhhccccchhhhHHhhhhcCcccc
Confidence 11122221100 112223333 899999999995443333333222 11222233467667777888999999753
Q ss_pred ------------CCcHHHHccccceee-ecCCCHHHHHHHHHHHHhh--cC--C-----CCCHHHHHHH---HHhcCCCC
Q psy2637 377 ------------ELDEAVLRRFSKRIY-VTLPDSKTRKSLLEKLLNK--HG--N-----PLSQLELDAV---AKLTEGYS 431 (502)
Q Consensus 377 ------------~l~~~l~rRf~~~I~-i~~P~~~er~~il~~~l~~--~~--~-----~l~~~~l~~l---a~~t~g~s 431 (502)
.|+.++++||+..+- ...|+.+.-..+.++...- +. . +++..-+..+ ++...-..
T Consensus 495 RYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~v 574 (721)
T KOG0482|consen 495 RYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVV 574 (721)
T ss_pred ccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCC
Confidence 688999999996543 3457666555555544321 11 1 1333333333 33333455
Q ss_pred HHHHHHHHHHHHhhhHHhhhhhhh------h--------hh---cccCCCcccHHHHHHHHHhh
Q psy2637 432 GSDLTNLAKDAALGPIRELNADQV------I--------KV---DLKSVRNISYRDFLESLKRI 478 (502)
Q Consensus 432 ~~dL~~L~~~a~~~airel~~~~~------~--------~v---~~~~~~~It~~d~~~al~~~ 478 (502)
+.++..-+..|....-++..+... + .. .+--...+..+|+.+||+-+
T Consensus 575 p~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 575 PEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred CHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 566666555555544444322100 0 00 01113457778888888744
No 258
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.32 E-value=7.2e-06 Score=79.53 Aligned_cols=131 Identities=16% Similarity=0.159 Sum_probs=73.6
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChh
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEH 341 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~ 341 (502)
.+..++||+|||||.+++.+|+.+|.+++.+||++..+. ..+..++.-+... .+-+.+||++.|..+.-
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl~~~vL---- 101 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRLSEEVL---- 101 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCSSHHHH----
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-CchhhhhhhhhhhHHHH----
Confidence 566789999999999999999999999999999886542 2234444433332 36899999999843211
Q ss_pred HHHHHHHHHHHHHhcc---------CCCCCCCcEEEEEEcCCC----CCCcHHHHccccceeeecCCCHHHHHHHH
Q psy2637 342 EASRRLKTEFLLEFDG---------LHSNSEHRLLVMGATNRP----QELDEAVLRRFSKRIYVTLPDSKTRKSLL 404 (502)
Q Consensus 342 ~~~~~~~~~ll~~l~g---------~~~~~~~~v~vIaaTN~~----~~l~~~l~rRf~~~I~i~~P~~~er~~il 404 (502)
.........+...+.. ..-.....+.+..|.|+. ..+++.++.-| +.+.+..||.....+++
T Consensus 102 S~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 102 SVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 1111111122222211 111111235566677743 47888887777 58999999988777765
No 259
>PRK06921 hypothetical protein; Provisional
Probab=98.32 E-value=1.7e-06 Score=85.92 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=43.9
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc----cCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC----NATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDS 331 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~----~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~ 331 (502)
..+++|+||||||||+|+.+|++++ +..++.++..++........ ......++. -....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 5789999999999999999999976 45566666555443321111 111112222 13457999999943
No 260
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=3.5e-05 Score=77.62 Aligned_cols=142 Identities=12% Similarity=0.029 Sum_probs=91.4
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccC-----------c--eEEeeccchhhhhhhhhHHHHHHHHHHHHh-----cCCe
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNA-----------T--FFSISAASLTSKYVGQGEKLVRALFAMARE-----LQPS 322 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~-----------~--fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~-----~~p~ 322 (502)
++..||+|+.|.||+.+|+.+++.+.+ | ++.++.. +.. .....++.+.+.+.. ....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCCce
Confidence 466789999999999999999998721 1 1222200 110 111223444443321 2446
Q ss_pred EEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHH
Q psy2637 323 IIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKS 402 (502)
Q Consensus 323 iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~ 402 (502)
|++||++|.+.. ...+.|+..++ .++..+++|.+|+.++.+-+.+++|+. ++.|.+|+.++..+
T Consensus 93 vvII~~~e~m~~-----------~a~NaLLK~LE----EPp~~t~~il~~~~~~kll~TI~SRc~-~~~f~~l~~~~l~~ 156 (299)
T PRK07132 93 ILIIKNIEKTSN-----------SLLNALLKTIE----EPPKDTYFLLTTKNINKVLPTIVSRCQ-VFNVKEPDQQKILA 156 (299)
T ss_pred EEEEecccccCH-----------HHHHHHHHHhh----CCCCCeEEEEEeCChHhChHHHHhCeE-EEECCCCCHHHHHH
Confidence 999999988722 23445666665 355667888778788899999999996 89999999988877
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhcCC
Q psy2637 403 LLEKLLNKHGNPLSQLELDAVAKLTEG 429 (502)
Q Consensus 403 il~~~l~~~~~~l~~~~l~~la~~t~g 429 (502)
.+... + .++.....++..+.|
T Consensus 157 ~l~~~----~--~~~~~a~~~a~~~~~ 177 (299)
T PRK07132 157 KLLSK----N--KEKEYNWFYAYIFSN 177 (299)
T ss_pred HHHHc----C--CChhHHHHHHHHcCC
Confidence 66432 2 344444555555554
No 261
>KOG0477|consensus
Probab=98.26 E-value=5.7e-07 Score=95.17 Aligned_cols=158 Identities=20% Similarity=0.252 Sum_probs=89.5
Q ss_pred cccChHHHHHHHHHHHhCcCCChhh-hhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccc---------hh
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPEL-FTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAAS---------LT 298 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l-~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~---------l~ 298 (502)
.|.|+..+|.++.-++.-...+..- -.++ ....+|||+|.|||||+-+.|.+++-....++..-.+. ..
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkv-RGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~K 528 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKV-RGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRK 528 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCcee-ccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEee
Confidence 5889999999998776332211110 0111 23468999999999999999999998865554422111 11
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC--
Q psy2637 299 SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ-- 376 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~-- 376 (502)
....+++.-- .+.+-.|. .||.+|||+|+|-.....+.+++..+. .+-..-.|+......++.||||+|+..
T Consensus 529 dPvtrEWTLE-aGALVLAD---kGvClIDEFDKMndqDRtSIHEAMEQQ--SISISKAGIVtsLqArctvIAAanPigGR 602 (854)
T KOG0477|consen 529 DPVTREWTLE-AGALVLAD---KGVCLIDEFDKMNDQDRTSIHEAMEQQ--SISISKAGIVTSLQARCTVIAAANPIGGR 602 (854)
T ss_pred CCccceeeec-cCeEEEcc---CceEEeehhhhhcccccchHHHHHHhc--chhhhhhhHHHHHHhhhhhheecCCCCCc
Confidence 1111111000 11111223 389999999999655444445444321 111111122223335688999999732
Q ss_pred -----------CCcHHHHccccceeeec
Q psy2637 377 -----------ELDEAVLRRFSKRIYVT 393 (502)
Q Consensus 377 -----------~l~~~l~rRf~~~I~i~ 393 (502)
.+..++++||+....+.
T Consensus 603 Y~~s~tFaqNV~ltePIlSRFDiLcVvk 630 (854)
T KOG0477|consen 603 YNPSLTFAQNVDLTEPILSRFDILCVVK 630 (854)
T ss_pred cCCccchhhccccccchhhhcceeeeee
Confidence 56688999998543333
No 262
>PF05729 NACHT: NACHT domain
Probab=98.25 E-value=1.2e-05 Score=72.94 Aligned_cols=139 Identities=15% Similarity=0.222 Sum_probs=72.2
Q ss_pred ceEEecCCCCcHHHHHHHHHHHcc--C------c-eEEeeccchhhhhh------------hhhHHHHHH-HHHHHHhcC
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACN--A------T-FFSISAASLTSKYV------------GQGEKLVRA-LFAMARELQ 320 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~--~------~-fv~i~~s~l~~~~~------------g~~~~~~~~-lf~~a~~~~ 320 (502)
.++|+|+||+|||++++.++..+. . + ++.+.+.+....-. ......... +........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999998761 1 1 22333333322100 000011111 112233445
Q ss_pred CeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHcccc--ceeeecCCCHH
Q psy2637 321 PSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFS--KRIYVTLPDSK 398 (502)
Q Consensus 321 p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~--~~I~i~~P~~~ 398 (502)
..+|+||.+|.+...............+..+ +.. . ...++.++.|+... .... +.+++. ..+.+...+.+
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l---~~~-~--~~~~~~liit~r~~-~~~~-~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQL---LPQ-A--LPPGVKLIITSRPR-AFPD-LRRRLKQAQILELEPFSEE 153 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHH---hhh-c--cCCCCeEEEEEcCC-hHHH-HHHhcCCCcEEEECCCCHH
Confidence 6799999999996532220111111122222 221 1 11234555455432 2211 333222 35888888999
Q ss_pred HHHHHHHHHHh
Q psy2637 399 TRKSLLEKLLN 409 (502)
Q Consensus 399 er~~il~~~l~ 409 (502)
++.++++.++.
T Consensus 154 ~~~~~~~~~f~ 164 (166)
T PF05729_consen 154 DIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHhh
Confidence 99999988765
No 263
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=8.4e-05 Score=74.34 Aligned_cols=169 Identities=15% Similarity=0.155 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCce--EEeeccch-----------hh
Q psy2637 233 QEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATF--FSISAASL-----------TS 299 (502)
Q Consensus 233 ~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~f--v~i~~s~l-----------~~ 299 (502)
+..+++.+...+... ..+...||+|| +||+++|+.+|+.+...- -.-.|+.. ++
T Consensus 7 q~~~~~~L~~~~~~~-----------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 7 QPKVFQRFQTILEQD-----------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 455667777766332 23577899996 689999999999762210 00011111 11
Q ss_pred h-hh---hh--hHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEE
Q psy2637 300 K-YV---GQ--GEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVM 369 (502)
Q Consensus 300 ~-~~---g~--~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vI 369 (502)
- ++ |. .-+.++.+...+.. ....|++||++|.|.. ...+.|+..++ .++.++++|
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~-----------~AaNaLLKtLE----EPp~~t~~i 138 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHV-----------NAANSLLKVIE----EPQSEIYIF 138 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCH-----------HHHHHHHHHhc----CCCCCeEEE
Confidence 0 00 11 12334455444432 2336999999998832 23556777665 456678888
Q ss_pred EEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHH
Q psy2637 370 GATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLA 439 (502)
Q Consensus 370 aaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~ 439 (502)
.+|+.++.+.+.+++|+. .+.|+. +.++..+++ .+.+. +......++... | +++....+.
T Consensus 139 L~t~~~~~lLpTI~SRcq-~i~f~~-~~~~~~~~L----~~~g~--~~~~a~~la~~~-~-s~~~A~~l~ 198 (290)
T PRK07276 139 LLTNDENKVLPTIKSRTQ-IFHFPK-NEAYLIQLL----EQKGL--LKTQAELLAKLA-Q-STSEAEKLA 198 (290)
T ss_pred EEECChhhCchHHHHcce-eeeCCC-cHHHHHHHH----HHcCC--ChHHHHHHHHHC-C-CHHHHHHHh
Confidence 899999999999999995 888865 444433433 33443 333334444444 4 444444444
No 264
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=3.8e-05 Score=75.13 Aligned_cols=121 Identities=11% Similarity=0.019 Sum_probs=78.0
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh-----------hh-h--h---hhhHHHHHHHHHHHHh---
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT-----------SK-Y--V---GQGEKLVRALFAMARE--- 318 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~-----------~~-~--~---g~~~~~~~~lf~~a~~--- 318 (502)
.++...||+||+|+||..+|.++|+.+-..--.-.|+... +- + . ....+.++.+.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4568899999999999999999999762110000122111 00 0 0 0112223333333221
Q ss_pred --cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCC
Q psy2637 319 --LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLP 395 (502)
Q Consensus 319 --~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P 395 (502)
....|++||++|.|. ....+.||..++ .++.++++|..|+.++.+.+.+++|+. .+.++.+
T Consensus 85 e~~~~KV~II~~ae~m~-----------~~AaNaLLK~LE----EPp~~t~fiLit~~~~~lLpTI~SRCq-~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN-----------KQSANSLLKLIE----EPPKNTYGIFTTRNENNILNTILSRCV-QYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhC-----------HHHHHHHHHhhc----CCCCCeEEEEEECChHhCchHhhhhee-eeecCCh
Confidence 234699999999883 234556777665 466789999999999999999999995 6777665
No 265
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.00019 Score=69.38 Aligned_cols=179 Identities=23% Similarity=0.271 Sum_probs=103.4
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCc---eEEeeccchh-----hhhhhh------------hHHHHHHHHHHHH-hc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNAT---FFSISAASLT-----SKYVGQ------------GEKLVRALFAMAR-EL 319 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~---fv~i~~s~l~-----~~~~g~------------~~~~~~~lf~~a~-~~ 319 (502)
..-+.++|+.|+|||+++|++...++.. .+.++...+. ..+... .+..-..+.+... +.
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~ 130 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGK 130 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCC
Confidence 3467899999999999999777766422 2233322221 111111 1122223333333 34
Q ss_pred CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcH----HHHccccceeeecCC
Q psy2637 320 QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDE----AVLRRFSKRIYVTLP 395 (502)
Q Consensus 320 ~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~----~l~rRf~~~I~i~~P 395 (502)
.|.++++||++.+..+ ..+.++ ++..++.-.... -.++.||-......+.. .+-.|+...|.+++.
T Consensus 131 r~v~l~vdEah~L~~~----~le~Lr-----ll~nl~~~~~~~-l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~ 200 (269)
T COG3267 131 RPVVLMVDEAHDLNDS----ALEALR-----LLTNLEEDSSKL-LSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPL 200 (269)
T ss_pred CCeEEeehhHhhhChh----HHHHHH-----HHHhhcccccCc-eeeeecCCcccchhhchHHHHhhhheEEEEEecCCc
Confidence 5689999999988332 112211 122222111111 22444443322222221 222388644888888
Q ss_pred CHHHHHHHHHHHHhhcCCC---CCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhh
Q psy2637 396 DSKTRKSLLEKLLNKHGNP---LSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIREL 450 (502)
Q Consensus 396 ~~~er~~il~~~l~~~~~~---l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel 450 (502)
+.++-...++++++.-+.+ +++..+..+...+.| .|+.++++|..|...+....
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~ 257 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAG 257 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcC
Confidence 9998999999999875433 567788888888888 56688999988887776643
No 266
>KOG1968|consensus
Probab=98.06 E-value=1.2e-05 Score=90.80 Aligned_cols=202 Identities=18% Similarity=0.212 Sum_probs=126.0
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCC-ChhhhhcCCCCC--c-ceEEecCCCCcHHHHHHHHHHHccCceEEeeccch
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSL-RPELFTGLRTPS--R-GLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~-~~~l~~~~~~~~--~-~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l 297 (502)
+.+....++.|.......+.+++..... .+..+....... . .++++||||+|||+.+..++...+..++..|.+..
T Consensus 314 ~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~ 393 (871)
T KOG1968|consen 314 YQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDV 393 (871)
T ss_pred cccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccc
Confidence 4444555677766555566666543311 111112111111 2 36999999999999999999999999999999877
Q ss_pred hhhhhhhh-------HHHHHHHH---H--HHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCc
Q psy2637 298 TSKYVGQG-------EKLVRALF---A--MARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHR 365 (502)
Q Consensus 298 ~~~~~g~~-------~~~~~~lf---~--~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~ 365 (502)
.++..... ...+.+.+ . ........||++||+|-++.. ..+ ....+..... ...
T Consensus 394 RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~-dRg-------~v~~l~~l~~------ks~ 459 (871)
T KOG1968|consen 394 RSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE-DRG-------GVSKLSSLCK------KSS 459 (871)
T ss_pred ccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch-hhh-------hHHHHHHHHH------hcc
Confidence 75432210 11111222 0 001112249999999998652 111 1112221111 112
Q ss_pred EEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHH
Q psy2637 366 LLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTN 437 (502)
Q Consensus 366 v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~ 437 (502)
.-+|+++|.........+.|.+..++|..|+.+.+..-+..++...+..+++..++.+.+.+.|.-...|..
T Consensus 460 ~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~ 531 (871)
T KOG1968|consen 460 RPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQ 531 (871)
T ss_pred CCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHH
Confidence 457778888766666555665457999999999999999999998888899999999999886544444333
No 267
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.01 E-value=2.4e-05 Score=70.42 Aligned_cols=72 Identities=21% Similarity=0.359 Sum_probs=45.7
Q ss_pred eEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh----------------------h--hhhHHHHHHHHHHH
Q psy2637 264 LLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY----------------------V--GQGEKLVRALFAMA 316 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~----------------------~--g~~~~~~~~lf~~a 316 (502)
++|+||||+|||+++..++... +.+.+.+++....... . .............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 4556555554322110 0 00111111223445
Q ss_pred HhcCCeEEEEcCCcchhcc
Q psy2637 317 RELQPSIIFIDEVDSVLSE 335 (502)
Q Consensus 317 ~~~~p~iLfLDEId~L~~~ 335 (502)
....+.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 5567889999999988543
No 268
>KOG0481|consensus
Probab=98.00 E-value=6.4e-05 Score=78.47 Aligned_cols=166 Identities=23% Similarity=0.326 Sum_probs=97.2
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEe----eccchhhhhhh
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSI----SAASLTSKYVG 303 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i----~~s~l~~~~~g 303 (502)
.|.|.+++|+++.-++.-. .++.+-.++. ...-+|||.|.|||.|+-+.+.+-+-+...++.- +++.+.....-
T Consensus 332 SIfG~~DiKkAiaClLFgG-srK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~R 410 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGG-SRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIR 410 (729)
T ss_pred hhcCchhHHHHHHHHhhcC-ccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEe
Confidence 5889999999997666332 2222223443 4457899999999999999999988664333321 01111110000
Q ss_pred hhHHH----HHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC---
Q psy2637 304 QGEKL----VRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ--- 376 (502)
Q Consensus 304 ~~~~~----~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~--- 376 (502)
..... -.+..-.|. .||+.|||+|+|-.+..-..+++.. ++.+-..-.|+....+.++-|+||+|+..
T Consensus 411 D~~tReFylEGGAMVLAD---gGVvCIDEFDKMre~DRVAIHEAME--QQTISIAKAGITT~LNSRtSVLAAANpvfGRy 485 (729)
T KOG0481|consen 411 DPSTREFYLEGGAMVLAD---GGVVCIDEFDKMREDDRVAIHEAME--QQTISIAKAGITTTLNSRTSVLAAANPVFGRY 485 (729)
T ss_pred cCCcceEEEecceEEEec---CCEEEeehhhccCchhhhHHHHHHH--hhhHHHhhhcceeeecchhhhhhhcCCccccc
Confidence 00000 001111223 3899999999995543333333333 22333344577777777888999999752
Q ss_pred ----------CCcHHHHccccceeeecCCCHHHH
Q psy2637 377 ----------ELDEAVLRRFSKRIYVTLPDSKTR 400 (502)
Q Consensus 377 ----------~l~~~l~rRf~~~I~i~~P~~~er 400 (502)
++-+.+++||+..+.+..-..+++
T Consensus 486 Dd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~ 519 (729)
T KOG0481|consen 486 DDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEER 519 (729)
T ss_pred cccCCcccccchhhhHhhhccEEEEEeccCcchh
Confidence 234789999997666665444434
No 269
>KOG1051|consensus
Probab=98.00 E-value=5.5e-05 Score=85.14 Aligned_cols=162 Identities=20% Similarity=0.302 Sum_probs=110.2
Q ss_pred cccccCh-HHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc----------cCceEEeecc
Q psy2637 227 WQDIAGQ-EVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC----------NATFFSISAA 295 (502)
Q Consensus 227 ~~~iiG~-~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv~i~~s 295 (502)
.+-++|. ++..+.+.+.+.. ...++-+|.|+||+|||.++.-+++.. +..++.++..
T Consensus 185 ldPvigr~deeirRvi~iL~R------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 4556676 5555666565522 123678999999999999999999976 2445666666
Q ss_pred chh--hhhhhhhHHHHHHHHHHHHh-cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEc
Q psy2637 296 SLT--SKYVGQGEKLVRALFAMARE-LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGAT 372 (502)
Q Consensus 296 ~l~--~~~~g~~~~~~~~lf~~a~~-~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaT 372 (502)
.+. .++-|+.+..+..+...+.. ....||||||++-+.+...... .....+ ++..+.. . ..+.+|+||
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~---~~d~~n-lLkp~L~---r--g~l~~IGat 323 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG---AIDAAN-LLKPLLA---R--GGLWCIGAT 323 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch---HHHHHH-hhHHHHh---c--CCeEEEecc
Confidence 543 34667788888999988874 3556999999999977655411 122222 2222211 1 228999988
Q ss_pred CCC-----CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhh
Q psy2637 373 NRP-----QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK 410 (502)
Q Consensus 373 N~~-----~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~ 410 (502)
... -.-+|++-+||+ .+.++.|+.+.-..+++.+-..
T Consensus 324 T~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 324 TLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cHHHHHHHHhhCcchhhCcc-eeEeccCcccchhhhhhhhhhh
Confidence 632 255788999997 7899999988877777766655
No 270
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.99 E-value=3.3e-05 Score=79.86 Aligned_cols=126 Identities=18% Similarity=0.299 Sum_probs=67.6
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccC-ceEEeeccchhhhhhhhh------HHHHHHHHHHHHhcCCeEEEEcCCcc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNA-TFFSISAASLTSKYVGQG------EKLVRALFAMARELQPSIIFIDEVDS 331 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~-~fv~i~~s~l~~~~~g~~------~~~~~~lf~~a~~~~p~iLfLDEId~ 331 (502)
.+++|++|+|++|+|||+|.-.+...+.. .-.++.-..++....... ...+..+.+.... ...+|+|||++-
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~V 138 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQV 138 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeeec
Confidence 45799999999999999999999988743 111222222222111111 1112222222222 224999999964
Q ss_pred hhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC-CCC-----c--------HHHHccccceeeecCC-C
Q psy2637 332 VLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP-QEL-----D--------EAVLRRFSKRIYVTLP-D 396 (502)
Q Consensus 332 L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~-~~l-----~--------~~l~rRf~~~I~i~~P-~ 396 (502)
- +-+...++..|+..+- ...+++|+|+|.+ +.| . ..+.++|. ++.+.-+ |
T Consensus 139 ~--------DiaDAmil~rLf~~l~------~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~-vv~ld~~~D 203 (362)
T PF03969_consen 139 T--------DIADAMILKRLFEALF------KRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCD-VVELDGGVD 203 (362)
T ss_pred c--------chhHHHHHHHHHHHHH------HCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceE-EEEecCCCc
Confidence 3 1122233334443332 1248999999974 322 1 12233564 7777776 4
Q ss_pred HHHH
Q psy2637 397 SKTR 400 (502)
Q Consensus 397 ~~er 400 (502)
.+.+
T Consensus 204 yR~~ 207 (362)
T PF03969_consen 204 YRRR 207 (362)
T ss_pred hhhh
Confidence 4443
No 271
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=97.99 E-value=3.7e-05 Score=61.31 Aligned_cols=75 Identities=52% Similarity=0.819 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHHHHHHHHhHhhh-ccCChhHHHHHHHHHHHHHHHHHHHHHHh
Q psy2637 125 QKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNC-YYGSGEKWERAQRLQEKMKNNLKMAKERL 201 (502)
Q Consensus 125 ~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~d~l~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (502)
|+..|+.|...|..|+..+|. |..+.|+.+|++|+..|.+.+.+.+ .....+.|++++.++.+++.......+++
T Consensus 1 ik~~~~~A~~~I~kaL~~dE~--g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 1 IRGYYKQAFEEISKALRADEW--GDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred CchHHHHHHHHHHHHhhhhhc--CCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999988886 9999999999999999999999876 36788999999999999999988887765
No 272
>PHA00729 NTP-binding motif containing protein
Probab=97.99 E-value=2e-05 Score=75.63 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=23.1
Q ss_pred cceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
.+++|+|+||||||++|.++++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 273
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=97.97 E-value=7.8e-06 Score=62.23 Aligned_cols=35 Identities=40% Similarity=0.830 Sum_probs=32.8
Q ss_pred CcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q psy2637 464 RNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYG 498 (502)
Q Consensus 464 ~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g 498 (502)
..|+++||..||+.++||++.++|++|++|+++||
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 36999999999999999999999999999999999
No 274
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.96 E-value=0.0002 Score=64.59 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.7
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
...++++|+||+||||++..++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3568999999999999999999877
No 275
>KOG2543|consensus
Probab=97.95 E-value=0.00023 Score=72.27 Aligned_cols=196 Identities=13% Similarity=0.117 Sum_probs=107.5
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh--------
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK-------- 300 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~-------- 300 (502)
.+.+.+.++..+..++... -...|..+.|+|.+|||||.+.+.+-+.++.+.+.++|-+....
T Consensus 7 ~v~~Re~qi~~L~~Llg~~---------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNN---------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHhCCC---------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 4667888888888877221 11346778999999999999999999999999999988665321
Q ss_pred --h-----hhh----hHHHHHH---HHHH---HHhc-CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCC
Q psy2637 301 --Y-----VGQ----GEKLVRA---LFAM---AREL-QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNS 362 (502)
Q Consensus 301 --~-----~g~----~~~~~~~---lf~~---a~~~-~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~ 362 (502)
. .|. ....+.+ ++.+ +... +.-.|++|.+|.+. ++...+.+.++..-+-. ..+
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--------D~~a~ll~~l~~L~el~-~~~ 148 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--------DMDAILLQCLFRLYELL-NEP 148 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--------ccchHHHHHHHHHHHHh-CCC
Confidence 0 111 0111222 2222 1122 24588999999983 22233333333322211 122
Q ss_pred CCcEEEEEEcCCCCCCcHHHHcc---cc-ceeeecCCCHHHHHHHHHHHHh-hcCCC----CCHHHHHHHHHhcCCCCHH
Q psy2637 363 EHRLLVMGATNRPQELDEAVLRR---FS-KRIYVTLPDSKTRKSLLEKLLN-KHGNP----LSQLELDAVAKLTEGYSGS 433 (502)
Q Consensus 363 ~~~v~vIaaTN~~~~l~~~l~rR---f~-~~I~i~~P~~~er~~il~~~l~-~~~~~----l~~~~l~~la~~t~g~s~~ 433 (502)
.+.||...-..+ .....+ ++ .+++||.|+.++...|+..--. +.... +-...+..+...+. ...
T Consensus 149 --~i~iils~~~~e---~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr--d~~ 221 (438)
T KOG2543|consen 149 --TIVIILSAPSCE---KQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR--DVN 221 (438)
T ss_pred --ceEEEEeccccH---HHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC--CHH
Confidence 244443332211 111111 11 3688999999999998854322 11100 00111222233333 566
Q ss_pred HHHHHHHHHHhhhHHh
Q psy2637 434 DLTNLAKDAALGPIRE 449 (502)
Q Consensus 434 dL~~L~~~a~~~aire 449 (502)
++..++..+|+.-...
T Consensus 222 eL~~~~~~~wpky~ep 237 (438)
T KOG2543|consen 222 ELRSLISLAWPKYCEP 237 (438)
T ss_pred HHHHHHHHHHHhhccc
Confidence 7777777777765443
No 276
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.94 E-value=5.5e-05 Score=87.54 Aligned_cols=138 Identities=18% Similarity=0.227 Sum_probs=93.6
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh--hhhhh----hHH---HHHHHHHHHHhcCCeEEEEcCC
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS--KYVGQ----GEK---LVRALFAMARELQPSIIFIDEV 329 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~--~~~g~----~~~---~~~~lf~~a~~~~p~iLfLDEI 329 (502)
...-++||.||+.+|||+++..+|+..+..|++||-.+... .|+|. ... ...+++-.|.+.. --|+|||+
T Consensus 886 ~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDEL 964 (4600)
T COG5271 886 LSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDEL 964 (4600)
T ss_pred hcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeecc
Confidence 34578999999999999999999999999999999876653 33332 111 1133444444433 37899999
Q ss_pred cchhcccccChhHHHHHHHHHHHHHhcc----------CCCCCCCcEEEEEEcCCCC------CCcHHHHccccceeeec
Q psy2637 330 DSVLSERKEGEHEASRRLKTEFLLEFDG----------LHSNSEHRLLVMGATNRPQ------ELDEAVLRRFSKRIYVT 393 (502)
Q Consensus 330 d~L~~~~~~~~~~~~~~~~~~ll~~l~g----------~~~~~~~~v~vIaaTN~~~------~l~~~l~rRf~~~I~i~ 393 (502)
+..+. .++..|-+.++. ..-.+..++++.||-|+|. .+..+++.||- .++|.
T Consensus 965 NLApT-----------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFl-E~hFd 1032 (4600)
T COG5271 965 NLAPT-----------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFL-EMHFD 1032 (4600)
T ss_pred ccCcH-----------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhH-hhhcc
Confidence 75522 122222222321 1112335789999999874 57788888994 78999
Q ss_pred CCCHHHHHHHHHHHHh
Q psy2637 394 LPDSKTRKSLLEKLLN 409 (502)
Q Consensus 394 ~P~~~er~~il~~~l~ 409 (502)
.-+.+|...|+...++
T Consensus 1033 dipedEle~ILh~rc~ 1048 (4600)
T COG5271 1033 DIPEDELEEILHGRCE 1048 (4600)
T ss_pred cCcHHHHHHHHhccCc
Confidence 9999999999876553
No 277
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.91 E-value=5.7e-05 Score=71.97 Aligned_cols=76 Identities=16% Similarity=0.318 Sum_probs=49.5
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchh-hhhhh----------------------hhHHHHHHH
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLT-SKYVG----------------------QGEKLVRAL 312 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~-~~~~g----------------------~~~~~~~~l 312 (502)
..+..++|+||||+|||+++..++... +.+.+.+++..+. ..+.. .....+..+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l 89 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKT 89 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHH
Confidence 345678999999999999999988754 5567777765421 11000 011113333
Q ss_pred HHHHHhcCCeEEEEcCCcchhc
Q psy2637 313 FAMARELQPSIIFIDEVDSVLS 334 (502)
Q Consensus 313 f~~a~~~~p~iLfLDEId~L~~ 334 (502)
.+.+....+++|+||-+..+..
T Consensus 90 ~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 90 SKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHhhcCccEEEEeCcHHHhH
Confidence 4445555789999999998854
No 278
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.90 E-value=0.0022 Score=67.99 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=28.6
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeecc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAA 295 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s 295 (502)
.++..++++|++|+|||+++..+|..+ +..+..++|.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 346789999999999999999999877 3444445543
No 279
>PF14516 AAA_35: AAA-like domain
Probab=97.90 E-value=0.0023 Score=65.65 Aligned_cols=187 Identities=16% Similarity=0.150 Sum_probs=103.3
Q ss_pred ccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhh--
Q psy2637 230 IAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQ-- 304 (502)
Q Consensus 230 iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~-- 304 (502)
.+....+.+.+.+.+. .++..+.|.||..+|||++...+.+.+ +...+.+++..+.......
T Consensus 13 Yi~R~~~e~~~~~~i~-------------~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 13 YIERPPAEQECYQEIV-------------QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred ccCchHHHHHHHHHHh-------------cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHH
Confidence 4556666777766652 346789999999999999999988766 6667777776643210000
Q ss_pred -----------------------------hHHHHHHHHHHH---HhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHH
Q psy2637 305 -----------------------------GEKLVRALFAMA---RELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFL 352 (502)
Q Consensus 305 -----------------------------~~~~~~~lf~~a---~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll 352 (502)
........|+.. ...+|-||+|||||.++.... +...++
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~---------~~~dF~ 150 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ---------IADDFF 150 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc---------hHHHHH
Confidence 001112223321 123678999999999965321 111222
Q ss_pred HHhccCCC-----CCCCcEEEEEEcCCCCCCcHHH-Hccc--cceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q psy2637 353 LEFDGLHS-----NSEHRLLVMGATNRPQELDEAV-LRRF--SKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVA 424 (502)
Q Consensus 353 ~~l~g~~~-----~~~~~v~vIaaTN~~~~l~~~l-~rRf--~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la 424 (502)
..+..... ....++++|.+......+.... .+=| ...+.++.-+.+|...+++. ++...++..++.+-
T Consensus 151 ~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~----~~~~~~~~~~~~l~ 226 (331)
T PF14516_consen 151 GLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQR----YGLEFSQEQLEQLM 226 (331)
T ss_pred HHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHh----hhccCCHHHHHHHH
Confidence 22221111 1112344444433221111111 1123 23566666688887776554 45567777899999
Q ss_pred HhcCCCCHHHHHHHHHHHH
Q psy2637 425 KLTEGYSGSDLTNLAKDAA 443 (502)
Q Consensus 425 ~~t~g~s~~dL~~L~~~a~ 443 (502)
..+.|.+. =+..+|...+
T Consensus 227 ~~tgGhP~-Lv~~~~~~l~ 244 (331)
T PF14516_consen 227 DWTGGHPY-LVQKACYLLV 244 (331)
T ss_pred HHHCCCHH-HHHHHHHHHH
Confidence 99998554 3444444443
No 280
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=0.00094 Score=69.65 Aligned_cols=141 Identities=18% Similarity=0.242 Sum_probs=75.3
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc-------Cc--eEEeeccchhh-----hhh---------hhhHHHHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN-------AT--FFSISAASLTS-----KYV---------GQGEKLVRALFAMAR 317 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~-------~~--fv~i~~s~l~~-----~~~---------g~~~~~~~~lf~~a~ 317 (502)
+..++|+||+|+||||++..+|..+. .. ++.+++..... .|. ......+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 56789999999999999999997652 23 34444321111 011 01111222222222
Q ss_pred hcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHcccc----ceeeec
Q psy2637 318 ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFS----KRIYVT 393 (502)
Q Consensus 318 ~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~----~~I~i~ 393 (502)
....+|+||+++....+ .. .+.++...++.... +...++|+.+|.....+.. .+++|. ..+-++
T Consensus 253 -~~~DlVLIDTaGr~~~~-----~~----~l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~-~~~~~~~~~~~~~I~T 320 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPKD-----FM----KLAEMKELLNACGR-DAEFHLAVSSTTKTSDVKE-IFHQFSPFSYKTVIFT 320 (388)
T ss_pred -CCCCEEEEcCCCCCccC-----HH----HHHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHH-HHHHhcCCCCCEEEEE
Confidence 34579999999876321 11 12223333332211 1134677777777666653 344331 256777
Q ss_pred CCCHHHHHHHHHHHHhhcCCC
Q psy2637 394 LPDSKTRKSLLEKLLNKHGNP 414 (502)
Q Consensus 394 ~P~~~er~~il~~~l~~~~~~ 414 (502)
..|...+..-+-..+...+.+
T Consensus 321 KlDet~~~G~~l~~~~~~~~P 341 (388)
T PRK12723 321 KLDETTCVGNLISLIYEMRKE 341 (388)
T ss_pred eccCCCcchHHHHHHHHHCCC
Confidence 777777766555555544333
No 281
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.87 E-value=3e-05 Score=74.48 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.4
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHH
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVAT 283 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~ 283 (502)
..+..+||||+||+|||++|+.++.
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC
Confidence 3356799999999999999999873
No 282
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.85 E-value=5e-05 Score=64.59 Aligned_cols=23 Identities=39% Similarity=0.795 Sum_probs=20.9
Q ss_pred eEEecCCCCcHHHHHHHHHHHcc
Q psy2637 264 LLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~~ 286 (502)
|.|+||||+|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998774
No 283
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.78 E-value=0.00022 Score=66.28 Aligned_cols=31 Identities=32% Similarity=0.361 Sum_probs=24.5
Q ss_pred eEEecCCCCcHHHHHHHHHHHc---cCceEEeec
Q psy2637 264 LLLFGPPGNGKTMLARAVATAC---NATFFSISA 294 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~---~~~fv~i~~ 294 (502)
+|++||||||||+++..++... +.+.+.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 7899999999999999887754 555555554
No 284
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.78 E-value=8.9e-05 Score=68.62 Aligned_cols=59 Identities=29% Similarity=0.403 Sum_probs=39.1
Q ss_pred ccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc---eEEeeccch
Q psy2637 230 IAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT---FFSISAASL 297 (502)
Q Consensus 230 iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~---fv~i~~s~l 297 (502)
++|.++..+++...+. . .....+..++|+|++|+|||++++.+......+ ++.++|...
T Consensus 2 fvgR~~e~~~l~~~l~-~--------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A--------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G--------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-H--------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6799999999988873 1 112345889999999999999999998877433 777777665
No 285
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.71 E-value=2.9e-05 Score=67.03 Aligned_cols=30 Identities=33% Similarity=0.680 Sum_probs=26.3
Q ss_pred eEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 264 LLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
|+|.|+||+||||+|+.+++.++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999987766544
No 286
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.69 E-value=3.9e-05 Score=70.83 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.5
Q ss_pred ceEEecCCCCcHHHHHHHHHHHc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~ 285 (502)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 287
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.68 E-value=0.0013 Score=69.18 Aligned_cols=122 Identities=20% Similarity=0.283 Sum_probs=70.5
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhH
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHE 342 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~ 342 (502)
.++|+||.++|||++++.+.+.....++.++..+.......- ... ...+..+.......+|||||+.+..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l-~d~-~~~~~~~~~~~~~yifLDEIq~v~~-------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL-LDL-LRAYIELKEREKSYIFLDEIQNVPD-------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH-HHH-HHHHHHhhccCCceEEEecccCchh--------
Confidence 789999999999999999999886556666655554332221 111 1122222222446999999987621
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcEEEEEEcCC--CCCCcHHHHccccceeeecCCCHHHHHHH
Q psy2637 343 ASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR--PQELDEAVLRRFSKRIYVTLPDSKTRKSL 403 (502)
Q Consensus 343 ~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~--~~~l~~~l~rRf~~~I~i~~P~~~er~~i 403 (502)
....+-...+ ....++++.+++.. ...+.+.+..|. ..+.+.+.+..|...+
T Consensus 109 ----W~~~lk~l~d----~~~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 109 ----WERALKYLYD----RGNLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKL 162 (398)
T ss_pred ----HHHHHHHHHc----cccceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhh
Confidence 1111111122 11113444433322 134445566686 4788888999998753
No 288
>PRK14974 cell division protein FtsY; Provisional
Probab=97.68 E-value=0.0012 Score=67.52 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=26.9
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeecc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAA 295 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s 295 (502)
.+..++|+||+|+||||++..+|..+ +..+..+++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 35678999999999999999998766 3444444443
No 289
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.68 E-value=0.00022 Score=62.03 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=37.6
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcc--eEEecCCCCcHHHHHHHHHHHc
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRG--LLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~--vLL~GppGtGKT~lAraia~~~ 285 (502)
.+.||.-+.+.+..++..-... ..|.++ +-|+|+||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~-------~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLAN-------PNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcC-------CCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 5889999988888887433221 123344 4588999999999999999986
No 290
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=97.66 E-value=4e-06 Score=78.42 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=50.0
Q ss_pred cccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 113 MASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 113 ~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
||+++|++||.++++.+...-+++.||. .+.++--++++.|+ |||.|||..+
T Consensus 56 mPd~~Gi~lL~~ir~~~~~~DVI~iTAA-------~d~~tI~~alr~Gv~DYLiKPf~~e 108 (224)
T COG4565 56 MPDGNGIELLPELRSQHYPVDVIVITAA-------SDMETIKEALRYGVVDYLIKPFTFE 108 (224)
T ss_pred cCCCccHHHHHHHHhcCCCCCEEEEecc-------chHHHHHHHHhcCchhheecceeHH
Confidence 8999999999999999999999999999 89999999999999 9999999984
No 291
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.66 E-value=0.00044 Score=72.03 Aligned_cols=63 Identities=21% Similarity=0.335 Sum_probs=38.7
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchh
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVL 333 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~ 333 (502)
...++++.||+|||||+++.+++... ..- .++.+.+... ... ..+.. -....+|+|||+..+.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG~--f~T~a~Lf~~----L~~---~~lg~--v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISGG--TITVAKLFYN----IST---RQIGL--VGRWDVVAFDEVATLK 273 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcCC--cCcHHHHHHH----HHH---HHHhh--hccCCEEEEEcCCCCc
Confidence 35889999999999999999988762 111 1222232221 111 11111 1234799999998864
No 292
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.0012 Score=68.40 Aligned_cols=140 Identities=18% Similarity=0.246 Sum_probs=71.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc----c-CceEEeeccchh-------hh---hhhh------hHHHHHHHHHHHHh
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC----N-ATFFSISAASLT-------SK---YVGQ------GEKLVRALFAMARE 318 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~----~-~~fv~i~~s~l~-------~~---~~g~------~~~~~~~lf~~a~~ 318 (502)
.+..++|.||+|+||||++..+|..+ + ..+..+.+..+. .. ..|. ....+...+ ...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l--~~l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL--AEL 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH--HHh
Confidence 35678999999999999999999864 2 233333332221 00 0010 001111111 222
Q ss_pred cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHc--c-----------
Q psy2637 319 LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--R----------- 385 (502)
Q Consensus 319 ~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~r--R----------- 385 (502)
.+..+|+||.......+ . ...+.+..+.+... +...++|+.+|+..+.+...+.. +
T Consensus 214 ~~~DlVLIDTaG~~~~d------~----~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~ 282 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRD------R----TVSDQIAMLHGADT-PVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPD 282 (374)
T ss_pred cCCCEEEEcCCCCCccc------H----HHHHHHHHHhccCC-CCeEEEEecCccChHHHHHHHHHHHHhhcccccccCC
Confidence 35579999999644111 1 12223333332221 22347778888777666544322 1
Q ss_pred ccceeeecCCCHHHHHHHHHHHHhhcCC
Q psy2637 386 FSKRIYVTLPDSKTRKSLLEKLLNKHGN 413 (502)
Q Consensus 386 f~~~I~i~~P~~~er~~il~~~l~~~~~ 413 (502)
++ .+.++..|...+..-+-..+...+.
T Consensus 283 ~~-~~I~TKlDEt~~~G~~l~~~~~~~l 309 (374)
T PRK14722 283 LA-GCILTKLDEASNLGGVLDTVIRYKL 309 (374)
T ss_pred CC-EEEEeccccCCCccHHHHHHHHHCc
Confidence 22 4556667666665444444444333
No 293
>PHA02624 large T antigen; Provisional
Probab=97.62 E-value=0.00028 Score=76.22 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=67.4
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhccccc-C
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE-G 339 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~-~ 339 (502)
.+.++|+||||||||+++.+|.+.++...+.+|+..-... |...-....-+++||++-.-...... .
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp 498 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLP 498 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCC
Confidence 4689999999999999999999999777777775432211 11111111258888988543321110 0
Q ss_pred hhHHHHHHHHHHHHHhccC-----CCCCCCcE-----EEEEEcCCCCCCcHHHHccccceeeecC
Q psy2637 340 EHEASRRLKTEFLLEFDGL-----HSNSEHRL-----LVMGATNRPQELDEAVLRRFSKRIYVTL 394 (502)
Q Consensus 340 ~~~~~~~~~~~ll~~l~g~-----~~~~~~~v-----~vIaaTN~~~~l~~~l~rRf~~~I~i~~ 394 (502)
...... -...+-..++|. .......+ -.|.|||. ..++..+.-||..++.|..
T Consensus 499 ~G~~~d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 499 SGQGMN-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred cccccc-hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 000000 011234455554 00111001 23447776 5788888889988887765
No 294
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.0015 Score=67.63 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=67.0
Q ss_pred HHhhhhhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHH
Q psy2637 199 ERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLA 278 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lA 278 (502)
..+...++++.+...+++.+....... .........+.+.+.+......+.. ....+..++|.||+|+||||++
T Consensus 185 ~~L~~~dV~~~~~~~ll~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~l~~~~~---~~~~~~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 185 RMLEQNDVEQYFIHAYAEKLKVKFENA---TMITEEEVIEYILEDMRSHFNTENV---FEKEVQTIALIGPTGVGKTTTL 258 (436)
T ss_pred HHHHHCCCCHHHHHHHHHHHHhhhccc---ccCCHHHHHHHHHHHHHHHhccccc---cccCCcEEEEECCCCCcHHHHH
Confidence 334445677777777777664332221 1122344455555444222111111 1223467999999999999999
Q ss_pred HHHHHHc---cCceEEeeccchh-------hhhh---------hhhHHHHHHHHHHHHh-cCCeEEEEcCCcch
Q psy2637 279 RAVATAC---NATFFSISAASLT-------SKYV---------GQGEKLVRALFAMARE-LQPSIIFIDEVDSV 332 (502)
Q Consensus 279 raia~~~---~~~fv~i~~s~l~-------~~~~---------g~~~~~~~~lf~~a~~-~~p~iLfLDEId~L 332 (502)
..||..+ +..+..+++.... ..|. ......+...+..+.. ....+||||-....
T Consensus 259 aKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 259 AKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKN 332 (436)
T ss_pred HHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCcccc
Confidence 9999876 3334444442221 0110 1122233334444432 24579999987654
No 295
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.60 E-value=8.9e-05 Score=79.68 Aligned_cols=63 Identities=24% Similarity=0.397 Sum_probs=48.2
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-cCceEEeec
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-NATFFSISA 294 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-~~~fv~i~~ 294 (502)
-|+++.|++++++++.+.+... ..++......++|.||||+|||+||+.|++.+ ..|++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~A------a~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHA------AQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHH------HHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 5789999999999998877221 13444455778999999999999999999987 346665533
No 296
>PRK08118 topology modulation protein; Reviewed
Probab=97.57 E-value=0.00016 Score=66.70 Aligned_cols=33 Identities=30% Similarity=0.562 Sum_probs=30.0
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEeec
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISA 294 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~ 294 (502)
..|+|+||||+||||+|+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 358999999999999999999999999888774
No 297
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.0036 Score=65.57 Aligned_cols=204 Identities=16% Similarity=0.176 Sum_probs=93.8
Q ss_pred HHhhhhhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCC-ChhhhhcCC-CCCcceEEecCCCCcHHH
Q psy2637 199 ERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSL-RPELFTGLR-TPSRGLLLFGPPGNGKTM 276 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~-~~~l~~~~~-~~~~~vLL~GppGtGKT~ 276 (502)
+.+...+++..+.+.+...+........ ....+.+...+.+.+..... ....+...+ ..+..++|.||+|+||||
T Consensus 162 ~~Ll~~gV~~~la~~Li~~l~~~~~~~~---~~~~~~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGvGKTT 238 (432)
T PRK12724 162 ERLVREGMSQSYVEEMASKLEERLSPVD---QGRNHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTT 238 (432)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhhcccc---ccchHHHHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCCCHHH
Confidence 3444456667777776666543222111 11123344444444422211 111111111 123558899999999999
Q ss_pred HHHHHHHHc----cCceEEeeccchhh-------hhhhh------hHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC
Q psy2637 277 LARAVATAC----NATFFSISAASLTS-------KYVGQ------GEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG 339 (502)
Q Consensus 277 lAraia~~~----~~~fv~i~~s~l~~-------~~~g~------~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~ 339 (502)
++..+|... +..+..+++..... .|... .......+.+.+......+|+||=......+
T Consensus 239 taaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~VLIDTaGr~~rd---- 314 (432)
T PRK12724 239 SIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILIDTAGYSHRN---- 314 (432)
T ss_pred HHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEEEEeCCCCCccC----
Confidence 999999754 33343344333221 11000 0111233344444445678999965432111
Q ss_pred hhHHHHHHHHHHHHHhccCCCC-CCCcEEEEEEcCCCCCCcHHHH--cccc-ceeeecCCCHHHHHHHHHHHHhhcCCC
Q psy2637 340 EHEASRRLKTEFLLEFDGLHSN-SEHRLLVMGATNRPQELDEAVL--RRFS-KRIYVTLPDSKTRKSLLEKLLNKHGNP 414 (502)
Q Consensus 340 ~~~~~~~~~~~ll~~l~g~~~~-~~~~v~vIaaTN~~~~l~~~l~--rRf~-~~I~i~~P~~~er~~il~~~l~~~~~~ 414 (502)
. ....++...+...... +...++|+.+|...+.+..... +.++ ..+-++..|...+..-+-..+...+.+
T Consensus 315 -~----~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~~G~il~i~~~~~lP 388 (432)
T PRK12724 315 -L----EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGSFLELADTYSKS 388 (432)
T ss_pred -H----HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCCccHHHHHHHHHCCC
Confidence 1 1122222222211111 2234667777766655543322 2221 246666677666665554555444444
No 298
>PRK07261 topology modulation protein; Provisional
Probab=97.55 E-value=0.00019 Score=66.48 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=29.0
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEeecc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSISAA 295 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s 295 (502)
.|+|+|+||+||||+|+.++..++.+++..+.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 489999999999999999999999888776643
No 299
>KOG0479|consensus
Probab=97.53 E-value=0.00034 Score=74.20 Aligned_cols=152 Identities=23% Similarity=0.332 Sum_probs=86.0
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCce---------EEeeccchh
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATF---------FSISAASLT 298 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~f---------v~i~~s~l~ 298 (502)
.|.|++-+|+++.-++.-.. ...+-.+-. ...-+||+.|.|.|.|+-|.|.+-+...... +-+.++-..
T Consensus 302 SI~GH~~vKkAillLLlGGv-Ek~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTt 380 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGV-EKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTT 380 (818)
T ss_pred ccccHHHHHHHHHHHHhccc-eeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEee
Confidence 58999999999887663221 111111111 3356899999999999999999987553211 111111001
Q ss_pred hhhhhhhHHHH-HHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHH--HHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 299 SKYVGQGEKLV-RALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEF--LLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 299 ~~~~g~~~~~~-~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~l--l~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
.. ...++++ .+..-.|. .||++|||+|+|..- +.-+.-.++.+- ...-.|+....+.++-|+||+|+.
T Consensus 381 D~--eTGERRLEAGAMVLAD---RGVVCIDEFDKMsDi----DRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPv 451 (818)
T KOG0479|consen 381 DQ--ETGERRLEAGAMVLAD---RGVVCIDEFDKMSDI----DRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPV 451 (818)
T ss_pred cc--ccchhhhhcCceEEcc---CceEEehhcccccch----hHHHHHHHHhcceEEeEeccchhhhccceeeeeecCcc
Confidence 11 1122221 11112223 389999999999322 111111111111 011136677777889999999975
Q ss_pred C-------------CCcHHHHcccccee
Q psy2637 376 Q-------------ELDEAVLRRFSKRI 390 (502)
Q Consensus 376 ~-------------~l~~~l~rRf~~~I 390 (502)
+ .|+..+++||+..+
T Consensus 452 yG~Yd~~k~P~eNIgLpDSLLSRFDLlF 479 (818)
T KOG0479|consen 452 YGQYDQSKTPMENIGLPDSLLSRFDLLF 479 (818)
T ss_pred ccccCCCCChhhccCCcHHHHhhhcEEE
Confidence 4 57899999998543
No 300
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.53 E-value=0.0005 Score=69.76 Aligned_cols=77 Identities=23% Similarity=0.303 Sum_probs=48.9
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhh----------------hhhhhHHHHHHHHHHHHhc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSK----------------YVGQGEKLVRALFAMAREL 319 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~----------------~~g~~~~~~~~lf~~a~~~ 319 (502)
+++..++|+||||||||+||..++... +.+.+.+++...... .....+..+..+....+..
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~ 132 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSG 132 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcc
Confidence 345678899999999999988877655 556666665432211 0011222223333334456
Q ss_pred CCeEEEEcCCcchhcc
Q psy2637 320 QPSIIFIDEVDSVLSE 335 (502)
Q Consensus 320 ~p~iLfLDEId~L~~~ 335 (502)
.+.+|+||-+..+.+.
T Consensus 133 ~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 133 AVDIIVVDSVAALVPK 148 (321)
T ss_pred CCcEEEEcchhhhccc
Confidence 7889999999998754
No 301
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.51 E-value=0.0002 Score=67.63 Aligned_cols=123 Identities=14% Similarity=0.148 Sum_probs=55.0
Q ss_pred eEEecCCCCcHHHHHHHH-HHHc---cCceEEeeccchhhhhhhh----hHH-------------HHHHHHHHHHhcCCe
Q psy2637 264 LLLFGPPGNGKTMLARAV-ATAC---NATFFSISAASLTSKYVGQ----GEK-------------LVRALFAMARELQPS 322 (502)
Q Consensus 264 vLL~GppGtGKT~lArai-a~~~---~~~fv~i~~s~l~~~~~g~----~~~-------------~~~~lf~~a~~~~p~ 322 (502)
.+++|.||+|||+.|-.. .... +.+++. |...+.-..... .-. ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999987555 3332 455443 443222110000 000 000111111111458
Q ss_pred EEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCC
Q psy2637 323 IIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLP 395 (502)
Q Consensus 323 iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P 395 (502)
+|+|||++..++.+......... .+..+.. .....+-||.+|..+..+++.+++..+..+.+..+
T Consensus 82 liviDEa~~~~~~r~~~~~~~~~-----~~~~l~~---hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKKVPE-----IIEFLAQ---HRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T----H-----HHHGGGG---CCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred EEEEECChhhcCCCccccccchH-----HHHHHHH---hCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 99999999998886552211111 1222221 12234677778999999999998866655555433
No 302
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.47 E-value=0.00012 Score=67.20 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=29.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
++..++|+|+||+|||++|+.+|+.++.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 356899999999999999999999999888754
No 303
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.45 E-value=0.0026 Score=73.87 Aligned_cols=154 Identities=21% Similarity=0.245 Sum_probs=84.6
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh---hhhh------------h---------------hhHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT---SKYV------------G---------------QGEKLVR 310 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~---~~~~------------g---------------~~~~~~~ 310 (502)
.+-++|+||+|.|||+++..++...+ ++.-+++..-. ..+. + .....+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 35689999999999999999887665 54443332111 0000 0 0011122
Q ss_pred HHHHHHHh-cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccce
Q psy2637 311 ALFAMARE-LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKR 389 (502)
Q Consensus 311 ~lf~~a~~-~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~ 389 (502)
.++..... ..|.+|+|||++.+.. ......+..++..+ +.++.+|.++.....+.-.-++.-+..
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~~-------~~~~~~l~~l~~~~-------~~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLITN-------PEIHEAMRFFLRHQ-------PENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCCC-------hHHHHHHHHHHHhC-------CCCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 33333332 5678999999997721 11122233333221 233445445543222221111111123
Q ss_pred eeec----CCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCH
Q psy2637 390 IYVT----LPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSG 432 (502)
Q Consensus 390 I~i~----~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~ 432 (502)
+.+. ..+.+|-.+++...+ +..+++..+..+...|+|+.-
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~---~~~~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRL---SSPIEAAESSRLCDDVEGWAT 220 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCChHH
Confidence 4444 558888888775443 456788899999999999765
No 304
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=97.45 E-value=1.5e-05 Score=83.93 Aligned_cols=63 Identities=19% Similarity=0.097 Sum_probs=55.7
Q ss_pred ccccccccccccccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 100 SSVIITECKDNVEMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.++.++..-. .||+|+|++|.+.+++..|++-.||.+|+ .+-+=|-++|+.|+ |||.||++.+
T Consensus 47 ~~pDiviTDI--~MP~mdGLdLI~~ike~~p~~~~IILSGy-------~eFeYak~Am~lGV~dYLLKP~~k~ 110 (475)
T COG4753 47 TQPDIVITDI--NMPGMDGLDLIKAIKEQSPDTEFIILSGY-------DEFEYAKKAMKLGVKDYLLKPVDKA 110 (475)
T ss_pred cCCCEEEEec--CCCCCcHHHHHHHHHHhCCCceEEEEecc-------chhHHHHHHHhcCchhheeCcCCHH
Confidence 4455554433 49999999999999999999999999999 99999999999999 9999999884
No 305
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.45 E-value=0.00074 Score=65.13 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=29.7
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeecc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAA 295 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s 295 (502)
..+..++|+||||+|||++|..++... +.+.+.+++.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 345678999999999999999999755 5667777765
No 306
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=97.41 E-value=1.4e-05 Score=70.64 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=50.4
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
-|.+++|+++++.+++..+++..++.|+| +++.+||+++|.|+ +||.||-+.+
T Consensus 62 kL~~gsGL~~i~~lr~~~~d~rivvLTGy-------~sIATAV~AvKlGA~~YLaKPAdaD 115 (182)
T COG4567 62 KLGDGSGLAVIEALRERRADMRIVVLTGY-------ASIATAVEAVKLGACDYLAKPADAD 115 (182)
T ss_pred eecCCCchHHHHHHHhcCCcceEEEEecc-------hHHHHHHHHHHhhhhhhcCCCCChH
Confidence 37889999999999999999999999999 99999999999999 9999998875
No 307
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.41 E-value=0.001 Score=70.96 Aligned_cols=77 Identities=27% Similarity=0.428 Sum_probs=52.7
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhh------hh--------hHHHHHHHHHHHHhcCC
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYV------GQ--------GEKLVRALFAMARELQP 321 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~------g~--------~~~~~~~lf~~a~~~~p 321 (502)
.++..++|+||||+|||+++..++... +.++++++..+-..... |. .+..+..+++.....+|
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~ 157 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKP 157 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCC
Confidence 345678999999999999999998865 55677776544332111 10 11223456666666788
Q ss_pred eEEEEcCCcchhcc
Q psy2637 322 SIIFIDEVDSVLSE 335 (502)
Q Consensus 322 ~iLfLDEId~L~~~ 335 (502)
.+|+||++..+...
T Consensus 158 ~lVVIDSIq~l~~~ 171 (446)
T PRK11823 158 DLVVIDSIQTMYSP 171 (446)
T ss_pred CEEEEechhhhccc
Confidence 99999999988653
No 308
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.41 E-value=0.00099 Score=64.73 Aligned_cols=75 Identities=21% Similarity=0.402 Sum_probs=45.2
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhh-----------------------------h--h
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYV-----------------------------G--Q 304 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~-----------------------------g--~ 304 (502)
.++..+++.||||||||+++..++... +.+.+.++..+-...+. + .
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSE 101 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHH
Confidence 345679999999999999986555433 44555554332111100 0 0
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEcCCcchh
Q psy2637 305 GEKLVRALFAMARELQPSIIFIDEVDSVL 333 (502)
Q Consensus 305 ~~~~~~~lf~~a~~~~p~iLfLDEId~L~ 333 (502)
....+..+.......+|.++++||+-.+.
T Consensus 102 ~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 102 KRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 12233344555555678899999998764
No 309
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.40 E-value=0.00079 Score=68.40 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=48.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhh-h---------------hhhhHHHHHHHHHHHHhcC
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSK-Y---------------VGQGEKLVRALFAMARELQ 320 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~-~---------------~g~~~~~~~~lf~~a~~~~ 320 (502)
.+..+.|+||||+|||++|-.++... +...+.+++..-... + ....+..+..+-..++...
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~ 133 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGA 133 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccC
Confidence 35668899999999999999887654 566666665332110 0 0112222222223344567
Q ss_pred CeEEEEcCCcchhcc
Q psy2637 321 PSIIFIDEVDSVLSE 335 (502)
Q Consensus 321 p~iLfLDEId~L~~~ 335 (502)
+++|+||-+..+.+.
T Consensus 134 ~~lIVIDSvaal~~~ 148 (325)
T cd00983 134 VDLIVVDSVAALVPK 148 (325)
T ss_pred CCEEEEcchHhhccc
Confidence 889999999998763
No 310
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.39 E-value=0.0008 Score=69.93 Aligned_cols=77 Identities=27% Similarity=0.465 Sum_probs=51.7
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh------hhh--------hHHHHHHHHHHHHhcCC
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY------VGQ--------GEKLVRALFAMARELQP 321 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~------~g~--------~~~~~~~lf~~a~~~~p 321 (502)
.++.-++|+|+||+|||+++..++... +.+.+.++..+-.... .+. .+..+..+++.+...+|
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~ 159 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKP 159 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCC
Confidence 345678999999999999999998765 3466666654322110 010 11223456666667789
Q ss_pred eEEEEcCCcchhcc
Q psy2637 322 SIIFIDEVDSVLSE 335 (502)
Q Consensus 322 ~iLfLDEId~L~~~ 335 (502)
.+|+||+|..+...
T Consensus 160 ~lVVIDSIq~l~~~ 173 (372)
T cd01121 160 DLVIIDSIQTVYSS 173 (372)
T ss_pred cEEEEcchHHhhcc
Confidence 99999999988543
No 311
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.39 E-value=0.01 Score=59.15 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=27.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeecc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAA 295 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s 295 (502)
++..++++||+|+||||++..+|..+ +..+.-+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45678889999999999999999876 4444444443
No 312
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.00046 Score=65.71 Aligned_cols=73 Identities=23% Similarity=0.346 Sum_probs=48.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc--------CceEEeecc-chhhhhhhh-------------hHHHHHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN--------ATFFSISAA-SLTSKYVGQ-------------GEKLVRALFAMAR 317 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~--------~~fv~i~~s-~l~~~~~g~-------------~~~~~~~lf~~a~ 317 (502)
...+.|+.||||+||||+.|-||..+. ..+..++-. ++.+...|. ..-.-.++....+
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH
Confidence 456789999999999999999999762 223333332 222211110 1122256777888
Q ss_pred hcCCeEEEEcCCcch
Q psy2637 318 ELQPSIIFIDEVDSV 332 (502)
Q Consensus 318 ~~~p~iLfLDEId~L 332 (502)
.+.|.|+++|||...
T Consensus 216 sm~PEViIvDEIGt~ 230 (308)
T COG3854 216 SMSPEVIIVDEIGTE 230 (308)
T ss_pred hcCCcEEEEeccccH
Confidence 999999999999754
No 313
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.0096 Score=61.58 Aligned_cols=80 Identities=13% Similarity=0.006 Sum_probs=49.7
Q ss_pred hhhhhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHH
Q psy2637 201 LSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARA 280 (502)
Q Consensus 201 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAra 280 (502)
+...++++.....+++.+....+..... +.+.+...+.+.+......+..+. ..++..++|+||+|+||||++..
T Consensus 151 L~~~gV~~~~~~~l~~~~~~~~~~~~~~---~~~~v~~~~~~~L~~~l~~~~~~~--~~~~~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 151 LKGRGISDTYVADFMQAGRKQFKQVETA---HLDDITDWFVPYLSGKLAVEDSFD--LSNHRIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred HHHcCCCHHHHHHHHHHHHHhccccccc---cHHHHHHHHHHHhcCcEeeCCCce--ecCCeEEEEECCCCCCHHHHHHH
Confidence 3345667777777777765543332222 235566666666643322222111 13457789999999999999999
Q ss_pred HHHHc
Q psy2637 281 VATAC 285 (502)
Q Consensus 281 ia~~~ 285 (502)
+|..+
T Consensus 226 LA~~l 230 (407)
T PRK12726 226 LGWQL 230 (407)
T ss_pred HHHHH
Confidence 99766
No 314
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.37 E-value=0.00056 Score=60.65 Aligned_cols=33 Identities=39% Similarity=0.716 Sum_probs=26.0
Q ss_pred eEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
|++.||||+||||+|+.+++.++..+ ++...+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~--i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV--ISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE--EeHHHHH
Confidence 68999999999999999999988433 4444443
No 315
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.031 Score=54.14 Aligned_cols=147 Identities=10% Similarity=0.077 Sum_probs=94.5
Q ss_pred CcceEEecCCC-CcHHHHHHHHHHHccC---------ceEEeeccchhhhh-hhhhHHHHHHHHHHHHh----cCCeEEE
Q psy2637 261 SRGLLLFGPPG-NGKTMLARAVATACNA---------TFFSISAASLTSKY-VGQGEKLVRALFAMARE----LQPSIIF 325 (502)
Q Consensus 261 ~~~vLL~GppG-tGKT~lAraia~~~~~---------~fv~i~~s~l~~~~-~g~~~~~~~~lf~~a~~----~~p~iLf 325 (502)
....||.|..+ +||..++..+++.+.. .++.+....-..+. ....-+.++.+.+.+.. .+..|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 46789999998 9999999988886622 23333221100000 00112334444444332 2346999
Q ss_pred EcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHH
Q psy2637 326 IDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLE 405 (502)
Q Consensus 326 LDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~ 405 (502)
|+++|.|.. ...+.+|..++ .++.++.+|..|..++.+.+.+++|+. .+.++.|....-.+...
T Consensus 95 I~~ae~mt~-----------~AANALLKtLE----EPP~~t~fILit~~~~~LLpTIrSRCq-~i~~~~p~~~~~~e~~~ 158 (263)
T PRK06581 95 IYSAELMNL-----------NAANSCLKILE----DAPKNSYIFLITSRAASIISTIRSRCF-KINVRSSILHAYNELYS 158 (263)
T ss_pred EechHHhCH-----------HHHHHHHHhhc----CCCCCeEEEEEeCChhhCchhHhhceE-EEeCCCCCHHHHHHHHH
Confidence 999998832 24556777665 456678888888889999999999995 89999999988888776
Q ss_pred HHHhhcCCCCCHHHHHHHHHh
Q psy2637 406 KLLNKHGNPLSQLELDAVAKL 426 (502)
Q Consensus 406 ~~l~~~~~~l~~~~l~~la~~ 426 (502)
..+... .+...++.+.+.
T Consensus 159 ~~~~p~---~~~~~l~~i~~~ 176 (263)
T PRK06581 159 QFIQPI---ADNKTLDFINRF 176 (263)
T ss_pred Hhcccc---cccHHHHHHHHH
Confidence 665432 233345555544
No 316
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.36 E-value=0.0012 Score=60.03 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=23.5
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..++|+||+|+||+++.|.+|.-.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 345679999999999999999999854
No 317
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.36 E-value=0.0084 Score=63.52 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=46.9
Q ss_pred HHhhhhhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHH
Q psy2637 199 ERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLA 278 (502)
Q Consensus 199 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lA 278 (502)
+.+...+++..+...+.+.+......... .......+.|.+.+... ... ....+..++|.||+|+||||++
T Consensus 168 ~~L~~~gv~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~L~~~l~~~--~~~----~~~~~~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 168 KRLKRSGLSPEIAEKLLKLLLEHMPPRER---TAWRYLLELLANMIPVR--VED----ILKQGGVVALVGPTGVGKTTTL 238 (424)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHhCcc--ccc----cccCCcEEEEECCCCCCHHHHH
Confidence 33444566677777776665433221111 01223333333333111 111 1122467899999999999999
Q ss_pred HHHHHHc-----cCceEEeeccc
Q psy2637 279 RAVATAC-----NATFFSISAAS 296 (502)
Q Consensus 279 raia~~~-----~~~fv~i~~s~ 296 (502)
..+|..+ +..+..+++..
T Consensus 239 ~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 239 AKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred HHHHHHHHHhcCCCeEEEEECCc
Confidence 8887654 23455555543
No 318
>KOG3347|consensus
Probab=97.35 E-value=0.00017 Score=64.10 Aligned_cols=32 Identities=31% Similarity=0.590 Sum_probs=28.7
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
.+++|++|.||||||+++..+|..++.+++.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 47899999999999999999999998877665
No 319
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.28 E-value=0.0027 Score=64.27 Aligned_cols=34 Identities=41% Similarity=0.578 Sum_probs=27.8
Q ss_pred hhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 253 LFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 253 l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
++.+...+++++.++|+-|.|||+|.-.....+.
T Consensus 57 lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 57 LFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred ccccCCCCCceEEEECCCCccHHHHHHHHHhhCC
Confidence 3344345779999999999999999999988774
No 320
>PRK10867 signal recognition particle protein; Provisional
Probab=97.27 E-value=0.056 Score=57.32 Aligned_cols=73 Identities=18% Similarity=0.289 Sum_probs=45.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc----cCceEEeeccchhhh-------h--------hh-----hhHHHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC----NATFFSISAASLTSK-------Y--------VG-----QGEKLVRALFAM 315 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~i~~s~l~~~-------~--------~g-----~~~~~~~~lf~~ 315 (502)
++..++++|++|+||||++..+|..+ +..+..++|...... + .. ..........+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 45678999999999999888888755 445555655433211 0 00 112222334455
Q ss_pred HHhcCCeEEEEcCCcch
Q psy2637 316 ARELQPSIIFIDEVDSV 332 (502)
Q Consensus 316 a~~~~p~iLfLDEId~L 332 (502)
+......+|++|=...+
T Consensus 179 a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 179 AKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHhcCCCEEEEeCCCCc
Confidence 55556789999977655
No 321
>PRK13947 shikimate kinase; Provisional
Probab=97.26 E-value=0.00027 Score=64.98 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=28.5
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
+|+|.|+||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6899999999999999999999999987654
No 322
>PRK03839 putative kinase; Provisional
Probab=97.26 E-value=0.00024 Score=66.04 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=27.7
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
.|+|.|+||+||||+++.+|+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4889999999999999999999998887653
No 323
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.26 E-value=0.0005 Score=65.17 Aligned_cols=68 Identities=22% Similarity=0.360 Sum_probs=41.5
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCc----eEEeec-cchhh---------hhhhhhHHHHHHHHHHHHhcCCeEEEEcC
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNAT----FFSISA-ASLTS---------KYVGQGEKLVRALFAMARELQPSIIFIDE 328 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~----fv~i~~-s~l~~---------~~~g~~~~~~~~lf~~a~~~~p~iLfLDE 328 (502)
-++|.||+|+||||+++++......+ ++.+.. .++.. .-.+.........+..+....|.++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 47899999999999999998877421 122111 01100 00111112234555666667899999999
Q ss_pred Cc
Q psy2637 329 VD 330 (502)
Q Consensus 329 Id 330 (502)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 83
No 324
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.25 E-value=0.059 Score=57.11 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=45.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc----cCceEEeeccchhhh-------h--------h--h--h-hHHHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC----NATFFSISAASLTSK-------Y--------V--G--Q-GEKLVRALFAM 315 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~i~~s~l~~~-------~--------~--g--~-~~~~~~~lf~~ 315 (502)
++..++++|++|+||||++..+|..+ +..+..++|...... + . + . ........++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 35678999999999999988888764 455666666433211 0 0 0 0 11222344555
Q ss_pred HHhcCCeEEEEcCCcch
Q psy2637 316 ARELQPSIIFIDEVDSV 332 (502)
Q Consensus 316 a~~~~p~iLfLDEId~L 332 (502)
+......+|++|=...+
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 55556679999977554
No 325
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.24 E-value=0.015 Score=59.03 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=24.6
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
..+..|.|+|+=|+|||++.+.+-+.+.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999988774
No 326
>PRK00625 shikimate kinase; Provisional
Probab=97.23 E-value=0.00028 Score=65.44 Aligned_cols=31 Identities=32% Similarity=0.525 Sum_probs=28.6
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
+|+|+|.||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999988765
No 327
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.23 E-value=0.0011 Score=65.80 Aligned_cols=93 Identities=14% Similarity=0.249 Sum_probs=57.2
Q ss_pred CCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC---ceEEee-ccchhh-
Q psy2637 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA---TFFSIS-AASLTS- 299 (502)
Q Consensus 225 ~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~---~fv~i~-~s~l~~- 299 (502)
.+++++.-.....+.+.+++. .+...++|.||+|+||||+++++...... .++.+. ..++.-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~-------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE-------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh-------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 355666555556666666652 12356899999999999999999877632 233331 111110
Q ss_pred -----hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCc
Q psy2637 300 -----KYVGQGEKLVRALFAMARELQPSIIFIDEVD 330 (502)
Q Consensus 300 -----~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId 330 (502)
.............+..+.++.|++|+++|+.
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 0011111224567777788899999999995
No 328
>PRK10536 hypothetical protein; Provisional
Probab=97.22 E-value=0.0031 Score=61.76 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=32.0
Q ss_pred cccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHH
Q psy2637 227 WQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 227 ~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~ 284 (502)
+..+.+.......+..++. ....++++||+|||||++|.+++.+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~--------------~~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIE--------------SKQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CccccCCCHHHHHHHHHHh--------------cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445666666666655551 1247899999999999999999985
No 329
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.20 E-value=0.023 Score=57.88 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..++|.||+|+||||++..+|..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999877
No 330
>PRK13695 putative NTPase; Provisional
Probab=97.18 E-value=0.0056 Score=56.56 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.5
Q ss_pred ceEEecCCCCcHHHHHHHHHHHc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++|+|++|+|||++++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988765
No 331
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.18 E-value=0.00036 Score=62.70 Aligned_cols=31 Identities=32% Similarity=0.549 Sum_probs=27.7
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
+|+|+|+||+|||++|+.+++.++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999998877554
No 332
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.18 E-value=0.011 Score=59.16 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=27.1
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc----c-CceEEeecc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC----N-ATFFSISAA 295 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~----~-~~fv~i~~s 295 (502)
.+..++|+||+|+||||++..+|..+ + ..+..+++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 35678999999999999999998865 2 344445443
No 333
>PRK04296 thymidine kinase; Provisional
Probab=97.16 E-value=0.0037 Score=58.87 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=24.0
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc---cCceEEe
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC---NATFFSI 292 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~---~~~fv~i 292 (502)
.-.+++||+|+|||+++..++.++ +...+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 357899999999999998888876 4444444
No 334
>PRK06762 hypothetical protein; Provisional
Probab=97.15 E-value=0.0013 Score=60.16 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=30.0
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
.-++|+|+||+||||+|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4688999999999999999999986556666655544
No 335
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.15 E-value=0.0032 Score=58.20 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=29.2
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEeeccc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSISAAS 296 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~ 296 (502)
.+|+.|+||+|||++|..++..++.+.+.+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5899999999999999999999887777766544
No 336
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.15 E-value=0.00051 Score=68.21 Aligned_cols=97 Identities=22% Similarity=0.329 Sum_probs=55.6
Q ss_pred CCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc---eEEeec-cchhh
Q psy2637 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT---FFSISA-ASLTS 299 (502)
Q Consensus 224 ~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~---fv~i~~-s~l~~ 299 (502)
..+++++.-.....+.+.+++... -.....+++.||+|+|||++++++....... ++.+.- .++.-
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l 169 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSA----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL 169 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHC----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--
T ss_pred cccHhhccCchhhHHHHHHHHhhc----------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee
Confidence 335666655544445555554211 1224789999999999999999999988433 332221 11110
Q ss_pred h------hh-hhhHHHHHHHHHHHHhcCCeEEEEcCCc
Q psy2637 300 K------YV-GQGEKLVRALFAMARELQPSIIFIDEVD 330 (502)
Q Consensus 300 ~------~~-g~~~~~~~~lf~~a~~~~p~iLfLDEId 330 (502)
. +. .........++..+.+..|++|+++||-
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 170 PGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred cccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 0 00 1122234667778888899999999995
No 337
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.14 E-value=0.0018 Score=55.78 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.5
Q ss_pred ceEEecCCCCcHHHHHHHHHHHc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~ 285 (502)
+++++||+|+|||+++-.++...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999988888766
No 338
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.12 E-value=0.00041 Score=64.29 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=29.9
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAAS 296 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~ 296 (502)
+..++|.|+||+||||+|+.+++.++.+++.++...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 356899999999999999999999987777665433
No 339
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.12 E-value=0.001 Score=63.00 Aligned_cols=34 Identities=35% Similarity=0.537 Sum_probs=24.7
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc---cCceEEeec
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC---NATFFSISA 294 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~ 294 (502)
.+..++.||||||||++++.+...+ +..++.+..
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 3567889999999999999988766 444444433
No 340
>PRK05973 replicative DNA helicase; Provisional
Probab=97.10 E-value=0.0049 Score=60.01 Aligned_cols=37 Identities=30% Similarity=0.369 Sum_probs=28.3
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeecc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAA 295 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s 295 (502)
.++..++|.|+||+|||+++-.++... +.+.+.++..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 455678999999999999999887755 5566555543
No 341
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.09 E-value=0.0015 Score=67.00 Aligned_cols=70 Identities=19% Similarity=0.365 Sum_probs=46.7
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccC--ceEEee-ccchh-----------hhh--hhhhHHHHHHHHHHHHhcCCeEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNA--TFFSIS-AASLT-----------SKY--VGQGEKLVRALFAMARELQPSII 324 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~--~fv~i~-~s~l~-----------~~~--~g~~~~~~~~lf~~a~~~~p~iL 324 (502)
..+++++|++|+||||+++++...... .++.+- ..++. ... .+...-....+++.+.+..|..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 578999999999999999999987742 222221 01111 000 11112234678888889999999
Q ss_pred EEcCCc
Q psy2637 325 FIDEVD 330 (502)
Q Consensus 325 fLDEId 330 (502)
+++|+-
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999995
No 342
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.09 E-value=0.00049 Score=63.99 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=27.4
Q ss_pred eEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
|+|+||||+||||+|+.+|+.++. ..++.+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHH
Confidence 689999999999999999999975 4455555543
No 343
>PRK06217 hypothetical protein; Validated
Probab=97.09 E-value=0.0005 Score=64.20 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=28.0
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
.|+|.|+||+||||+|+.|++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998877654
No 344
>PRK13949 shikimate kinase; Provisional
Probab=97.08 E-value=0.00049 Score=63.57 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=29.1
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
..|+|.|+||+|||++++.+|+.++.+|+..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36899999999999999999999998888765
No 345
>PRK14532 adenylate kinase; Provisional
Probab=97.07 E-value=0.00051 Score=64.28 Aligned_cols=36 Identities=28% Similarity=0.514 Sum_probs=28.6
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~ 300 (502)
.++|.||||+||||+|+.+|+.++.++ ++++++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHH
Confidence 489999999999999999999998655 445555443
No 346
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.06 E-value=0.0016 Score=68.95 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=60.0
Q ss_pred CCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhh--
Q psy2637 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKY-- 301 (502)
Q Consensus 224 ~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~-- 301 (502)
..++++++......+.+.+++. .|..-+|++||+|+|||++..++.+.++.+...|...+-+-.|
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~-------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~ 300 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLN-------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQL 300 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHh-------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeec
Confidence 3455666666666666666663 2345578889999999999999999986655433222111100
Q ss_pred hh--------hhHHHHHHHHHHHHhcCCeEEEEcCCcc
Q psy2637 302 VG--------QGEKLVRALFAMARELQPSIIFIDEVDS 331 (502)
Q Consensus 302 ~g--------~~~~~~~~lf~~a~~~~p~iLfLDEId~ 331 (502)
.| ...-.....++...++.|+||.+.||-.
T Consensus 301 ~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 301 PGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred CCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 00 0111124456667788999999999954
No 347
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.03 E-value=0.0067 Score=57.42 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.2
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
|..++|.||+|+||||++-.+|..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 3568999999999999999999877
No 348
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.03 E-value=0.00059 Score=60.67 Aligned_cols=30 Identities=23% Similarity=0.527 Sum_probs=27.5
Q ss_pred eEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 264 LLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
+.|.|+||+|||++|+.++..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999987765
No 349
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.00072 Score=63.01 Aligned_cols=34 Identities=29% Similarity=0.626 Sum_probs=27.1
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
.|+|.||||+||||+|+.|++.+ ++..++...+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHHh
Confidence 48999999999999999999995 45555544443
No 350
>PRK13948 shikimate kinase; Provisional
Probab=97.02 E-value=0.00077 Score=63.04 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=31.6
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
.++..|+|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45688999999999999999999999999998665
No 351
>PHA02774 E1; Provisional
Probab=97.01 E-value=0.0031 Score=68.09 Aligned_cols=34 Identities=24% Similarity=0.580 Sum_probs=28.1
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEE-eec
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFS-ISA 294 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~-i~~ 294 (502)
..+++|+||||||||++|.+|++.++...+. +|.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 3689999999999999999999998655544 553
No 352
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.00 E-value=0.00063 Score=61.10 Aligned_cols=28 Identities=29% Similarity=0.622 Sum_probs=24.6
Q ss_pred eEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 264 LLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
++|+|+||+||||+|+.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998766553
No 353
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.99 E-value=0.0051 Score=59.95 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=26.7
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeec
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISA 294 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~ 294 (502)
.++..+|++||||+|||++|..++.+. +.+.+.++.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 456789999999999999998776543 445555543
No 354
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.98 E-value=0.0046 Score=59.45 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=28.5
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---c------CceEEeeccc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---N------ATFFSISAAS 296 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~------~~fv~i~~s~ 296 (502)
..+.-+.|+||||+|||+++..++... + ...+.++...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 345678999999999999999998764 2 4556666543
No 355
>PRK14530 adenylate kinase; Provisional
Probab=96.98 E-value=0.00071 Score=64.90 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=27.1
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
..|+|.||||+||||+|+.||+.++.+++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4699999999999999999999998766643
No 356
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.96 E-value=0.0043 Score=60.07 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=28.5
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---------cCceEEeeccc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---------NATFFSISAAS 296 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---------~~~fv~i~~s~ 296 (502)
..+.-+.|+||||+|||+++..++... +...+.++...
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 345678999999999999999998653 14566666543
No 357
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.96 E-value=0.0045 Score=59.31 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=27.7
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeec
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISA 294 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~ 294 (502)
.+..++|+|+||+|||+++..++... +.+.+.++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 35668999999999999999999775 456666654
No 358
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.95 E-value=0.0027 Score=61.64 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=27.5
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeec
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISA 294 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~ 294 (502)
..+..++++|+||+|||+++..++... +.+.+.++.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 446778999999999999999997653 455555544
No 359
>PRK09354 recA recombinase A; Provisional
Probab=96.95 E-value=0.0039 Score=63.92 Aligned_cols=75 Identities=24% Similarity=0.335 Sum_probs=47.0
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhh-h---------------hhhhHHHHHHHHHHHHhcC
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSK-Y---------------VGQGEKLVRALFAMARELQ 320 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~-~---------------~g~~~~~~~~lf~~a~~~~ 320 (502)
.+..++|+||+|||||+||-.++... +...+.++...-... + ....+..+..+-...+...
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~ 138 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGA 138 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCC
Confidence 45678899999999999999877654 556666665432210 0 0111222222223334557
Q ss_pred CeEEEEcCCcchhc
Q psy2637 321 PSIIFIDEVDSVLS 334 (502)
Q Consensus 321 p~iLfLDEId~L~~ 334 (502)
+.+|+||-+..+.+
T Consensus 139 ~~lIVIDSvaaL~~ 152 (349)
T PRK09354 139 VDLIVVDSVAALVP 152 (349)
T ss_pred CCEEEEeChhhhcc
Confidence 88999999998875
No 360
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.95 E-value=0.0025 Score=62.56 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=24.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccC
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNA 287 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~ 287 (502)
.+..++|.||+|+|||++++.+++....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3567999999999999999999998743
No 361
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.95 E-value=0.0014 Score=67.65 Aligned_cols=70 Identities=21% Similarity=0.322 Sum_probs=44.4
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccC----ceEEee-ccchh---------hhhhhhhHHHHHHHHHHHHhcCCeEEEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNA----TFFSIS-AASLT---------SKYVGQGEKLVRALFAMARELQPSIIFI 326 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~----~fv~i~-~s~l~---------~~~~g~~~~~~~~lf~~a~~~~p~iLfL 326 (502)
...++|+||+|+||||+++++....+. .++.+. ..++. ..-.|.........+..+....|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 467899999999999999999987642 222221 11110 0011221122355666777789999999
Q ss_pred cCCc
Q psy2637 327 DEVD 330 (502)
Q Consensus 327 DEId 330 (502)
||+-
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9994
No 362
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.94 E-value=0.0013 Score=68.35 Aligned_cols=70 Identities=20% Similarity=0.309 Sum_probs=44.6
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc-----CceEEeecc-chh-----------hhhhhhhHHHHHHHHHHHHhcCCeE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN-----ATFFSISAA-SLT-----------SKYVGQGEKLVRALFAMARELQPSI 323 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~i~~s-~l~-----------~~~~g~~~~~~~~lf~~a~~~~p~i 323 (502)
...+|++||+|+||||+++++..... ...+.+.-. ++. ..-+|.........+..+.+..|.+
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~ 228 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKI 228 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCE
Confidence 35689999999999999999988762 223332110 110 0011111122355667777889999
Q ss_pred EEEcCCc
Q psy2637 324 IFIDEVD 330 (502)
Q Consensus 324 LfLDEId 330 (502)
|+++|+-
T Consensus 229 I~vGEiR 235 (372)
T TIGR02525 229 IGVGEIR 235 (372)
T ss_pred EeeCCCC
Confidence 9999995
No 363
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.94 E-value=0.00075 Score=61.98 Aligned_cols=32 Identities=34% Similarity=0.546 Sum_probs=29.5
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
.++.|.|++|+||||+.+++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999999998654
No 364
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.94 E-value=0.00072 Score=61.69 Aligned_cols=27 Identities=37% Similarity=0.652 Sum_probs=24.0
Q ss_pred eEEecCCCCcHHHHHHHHHHHccCceE
Q psy2637 264 LLLFGPPGNGKTMLARAVATACNATFF 290 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~~~~fv 290 (502)
++|.||+|+||||+|+.+++.++.+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 478999999999999999999986654
No 365
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.93 E-value=0.00079 Score=63.03 Aligned_cols=28 Identities=39% Similarity=0.674 Sum_probs=24.9
Q ss_pred eEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 264 LLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
|+|+||||+|||++|+.|++.++.+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 7999999999999999999998766544
No 366
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.00073 Score=60.99 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=25.7
Q ss_pred eEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 264 LLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
|-+.|||||||||+|+.||+.++.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999988875
No 367
>PRK14531 adenylate kinase; Provisional
Probab=96.93 E-value=0.00085 Score=62.70 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=28.4
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
..++++||||+||||+++.+|+.++.+++. ++++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 458999999999999999999999866544 44443
No 368
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.93 E-value=0.0039 Score=67.82 Aligned_cols=27 Identities=44% Similarity=0.621 Sum_probs=24.0
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+||.||+|+|||++.|+||.--
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 466789999999999999999999843
No 369
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.93 E-value=0.007 Score=57.43 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.1
Q ss_pred CcceEEecCCCCcHHHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~ 284 (502)
+..++|+||+|+|||++++.|+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 367899999999999999999853
No 370
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.92 E-value=0.0017 Score=67.17 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=22.9
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
+...+|+||+|+|||+|++.|++...
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Confidence 45689999999999999999998773
No 371
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.91 E-value=0.0018 Score=60.73 Aligned_cols=71 Identities=27% Similarity=0.417 Sum_probs=44.8
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc--CceEEeecc-chhh---h----------hhhhhHHHHHHHHHHHHhcCCeE
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN--ATFFSISAA-SLTS---K----------YVGQGEKLVRALFAMARELQPSI 323 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~--~~fv~i~~s-~l~~---~----------~~g~~~~~~~~lf~~a~~~~p~i 323 (502)
....++|.||+|+||||+++++..... ...+.+... ++.. . ..+........++..+.+..|..
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 357899999999999999999998763 122222110 1100 0 00111122456677777788999
Q ss_pred EEEcCCc
Q psy2637 324 IFIDEVD 330 (502)
Q Consensus 324 LfLDEId 330 (502)
++++|+-
T Consensus 104 i~igEir 110 (186)
T cd01130 104 IIVGEVR 110 (186)
T ss_pred EEEEccC
Confidence 9999994
No 372
>PRK06547 hypothetical protein; Provisional
Probab=96.90 E-value=0.00097 Score=61.77 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=28.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
++..|+|.|++|+|||++|+.+++.++.+++..+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 4567888999999999999999999887766543
No 373
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.90 E-value=0.0013 Score=65.39 Aligned_cols=69 Identities=25% Similarity=0.438 Sum_probs=43.6
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccC----------ceEEee-ccchhhhh-------hhh------hHHHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNA----------TFFSIS-AASLTSKY-------VGQ------GEKLVRALFAMAR 317 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~----------~fv~i~-~s~l~~~~-------~g~------~~~~~~~lf~~a~ 317 (502)
.+++|.||+|+||||+.+.++..... .+..++ ..++...+ .+. ......+++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 68999999999999999999987731 221121 11221110 010 0111245667777
Q ss_pred hcCCeEEEEcCCc
Q psy2637 318 ELQPSIIFIDEVD 330 (502)
Q Consensus 318 ~~~p~iLfLDEId 330 (502)
.+.|.++++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999974
No 374
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.87 E-value=0.0045 Score=72.05 Aligned_cols=139 Identities=20% Similarity=0.313 Sum_probs=81.3
Q ss_pred CCCcceEEecCCCCcHHHH-HHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHh---------c------CCe
Q psy2637 259 TPSRGLLLFGPPGNGKTML-ARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARE---------L------QPS 322 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~l-Araia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~---------~------~p~ 322 (502)
...++++++||||+|||++ .-++-.++...++.+|-+.-... ...+. .++.-.. . +-.
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T-----~s~ls-~Ler~t~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMT-----PSKLS-VLERETEYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCC-----HHHHH-HHHhhceeeccCCeEEEccCcchhhe
Confidence 5568999999999999995 56777777778888776543221 11111 1111100 0 115
Q ss_pred EEEEcCCcchhcccccChhH---HHHHHHHHHHHHhccCCCCCC------CcEEEEEEcCCCCC-----CcHHHHccccc
Q psy2637 323 IIFIDEVDSVLSERKEGEHE---ASRRLKTEFLLEFDGLHSNSE------HRLLVMGATNRPQE-----LDEAVLRRFSK 388 (502)
Q Consensus 323 iLfLDEId~L~~~~~~~~~~---~~~~~~~~ll~~l~g~~~~~~------~~v~vIaaTN~~~~-----l~~~l~rRf~~ 388 (502)
|||.|||+ |.....-.... .++.+ .+.+|...... .++.+.|+||++.. ....+.||- .
T Consensus 1566 VLFcDeIn-Lp~~~~y~~~~vI~FlR~l-----~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v 1638 (3164)
T COG5245 1566 VLFCDEIN-LPYGFEYYPPTVIVFLRPL-----VERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-V 1638 (3164)
T ss_pred EEEeeccC-CccccccCCCceEEeeHHH-----HHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-e
Confidence 99999998 43222111111 11111 11223322221 35889999998753 335555554 4
Q ss_pred eeeecCCCHHHHHHHHHHHHhh
Q psy2637 389 RIYVTLPDSKTRKSLLEKLLNK 410 (502)
Q Consensus 389 ~I~i~~P~~~er~~il~~~l~~ 410 (502)
.+.+..|.......|.+.++..
T Consensus 1639 ~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1639 FVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EEEecCcchhhHHHHHHHHHHH
Confidence 6888899999999888877654
No 375
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.86 E-value=0.047 Score=57.05 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHH--HHHHHHccCceEEeeccchh
Q psy2637 236 AKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLA--RAVATACNATFFSISAASLT 298 (502)
Q Consensus 236 ~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lA--raia~~~~~~fv~i~~s~l~ 298 (502)
..++|+.++.. .+..-|++.||.|+||+.++ +++..+ .....++|..+.
T Consensus 4 ~~~~L~~wL~e------------~~~TFIvV~GPrGSGK~elV~d~~L~~r--~~vL~IDC~~i~ 54 (431)
T PF10443_consen 4 AIEQLKSWLNE------------NPNTFIVVQGPRGSGKRELVMDHVLKDR--KNVLVIDCDQIV 54 (431)
T ss_pred HHHHHHHHHhc------------CCCeEEEEECCCCCCccHHHHHHHHhCC--CCEEEEEChHhh
Confidence 45666666632 23456888999999999999 555553 347778886664
No 376
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.86 E-value=0.0077 Score=55.62 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=44.9
Q ss_pred eEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh-hh----------------hhhHHHHHHHHHHHHhc-CCeEEE
Q psy2637 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK-YV----------------GQGEKLVRALFAMAREL-QPSIIF 325 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~-~~----------------g~~~~~~~~lf~~a~~~-~p~iLf 325 (502)
+|+.|++|+|||++|..++...+.+.+++..+.-.+. +. .+... .+.+..... .+++|+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~---~l~~~l~~~~~~~~VL 78 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPR---DLVSALKELDPGDVVL 78 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHH---HHHHHHHhcCCCCEEE
Confidence 6899999999999999999887767777655432211 00 01111 222222222 457999
Q ss_pred EcCCcchhcccc
Q psy2637 326 IDEVDSVLSERK 337 (502)
Q Consensus 326 LDEId~L~~~~~ 337 (502)
||-+..+..+..
T Consensus 79 IDclt~~~~n~l 90 (169)
T cd00544 79 IDCLTLWVTNLL 90 (169)
T ss_pred EEcHhHHHHHhC
Confidence 999988765543
No 377
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.86 E-value=0.016 Score=56.42 Aligned_cols=129 Identities=11% Similarity=0.216 Sum_probs=67.3
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCce--EEeeccchhhhh--------h------hhhHHHH---HHHHHHH----
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATF--FSISAASLTSKY--------V------GQGEKLV---RALFAMA---- 316 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~f--v~i~~s~l~~~~--------~------g~~~~~~---~~lf~~a---- 316 (502)
.+-.+.+.|++|||||++++.+.......| +.+-+......+ + ...+..+ ....+..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 346799999999999999999988764322 222222111111 0 0001111 1111111
Q ss_pred Hhc---CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeec
Q psy2637 317 REL---QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVT 393 (502)
Q Consensus 317 ~~~---~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~ 393 (502)
... .+.+|+||++..- ..-......++. . .+..++-+|..+...-.+++.++.-.+.++.+.
T Consensus 92 ~~~k~~~~~LiIlDD~~~~---------~~k~~~l~~~~~--~----gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~ 156 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK---------KLKSKILRQFFN--N----GRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFN 156 (241)
T ss_pred cccCCCCCeEEEEeCCCCc---------hhhhHHHHHHHh--c----ccccceEEEEEeeecccCCHHHhhcceEEEEec
Confidence 112 2579999998421 011111222221 1 223457788888888899999877676555454
Q ss_pred CCCHHHHHHHH
Q psy2637 394 LPDSKTRKSLL 404 (502)
Q Consensus 394 ~P~~~er~~il 404 (502)
.+.+...-++
T Consensus 157 -~s~~dl~~i~ 166 (241)
T PF04665_consen 157 -NSKRDLENIY 166 (241)
T ss_pred -CcHHHHHHHH
Confidence 3444444443
No 378
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.85 E-value=0.0011 Score=60.91 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=28.6
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
..++|+|++|+|||++++.+|+.++.+|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 46899999999999999999999999987654
No 379
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.85 E-value=0.041 Score=50.09 Aligned_cols=130 Identities=15% Similarity=0.230 Sum_probs=70.9
Q ss_pred ecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHH
Q psy2637 267 FGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRR 346 (502)
Q Consensus 267 ~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~ 346 (502)
.+.+||||||++.++++-++. +-.+.-.++.++ ...+.+....+.+......++|.|==+... +
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~------------r 68 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQK------------R 68 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchH------------H
Confidence 588999999999999999873 333444444433 223334455555543444688988444331 1
Q ss_pred HHHHHHHHhccCC---CCCCCcEEEEEEcCCCCCCcHHHHc--------cccc--eeeecCCCHHHHHHHHHHHHhhcC
Q psy2637 347 LKTEFLLEFDGLH---SNSEHRLLVMGATNRPQELDEAVLR--------RFSK--RIYVTLPDSKTRKSLLEKLLNKHG 412 (502)
Q Consensus 347 ~~~~ll~~l~g~~---~~~~~~v~vIaaTN~~~~l~~~l~r--------Rf~~--~I~i~~P~~~er~~il~~~l~~~~ 412 (502)
...++...+.... -....++.+||-.=..+.-.+.+.+ |=+. .|.....+...-..|+..++.++.
T Consensus 69 eR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfe 147 (168)
T PF08303_consen 69 ERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFE 147 (168)
T ss_pred HHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcC
Confidence 2222332222211 1122467888766433222222222 4332 455555567777888888887753
No 380
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.0056 Score=57.53 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.8
Q ss_pred ceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~ 286 (502)
-++++|+||+|||++|+.+|+.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 378999999999999999999883
No 381
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.83 E-value=0.0068 Score=64.79 Aligned_cols=76 Identities=25% Similarity=0.339 Sum_probs=50.5
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh------hhh--------hHHHHHHHHHHHHhcCC
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY------VGQ--------GEKLVRALFAMARELQP 321 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~------~g~--------~~~~~~~lf~~a~~~~p 321 (502)
.++.-++|.|+||+|||+++..++... +.+.++++..+-.... .+. .+..+..+.+.+...+|
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~ 171 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENP 171 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCC
Confidence 455678999999999999999998765 3466666653322110 000 01123455566666789
Q ss_pred eEEEEcCCcchhc
Q psy2637 322 SIIFIDEVDSVLS 334 (502)
Q Consensus 322 ~iLfLDEId~L~~ 334 (502)
.+|+||.|..+..
T Consensus 172 ~~vVIDSIq~l~~ 184 (454)
T TIGR00416 172 QACVIDSIQTLYS 184 (454)
T ss_pred cEEEEecchhhcc
Confidence 9999999998754
No 382
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.83 E-value=0.0064 Score=59.12 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=27.1
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc----cCceEEeec
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC----NATFFSISA 294 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~i~~ 294 (502)
++.-++|.|+||+|||+++..++... +.+++.+++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 45678999999999999999887654 556665553
No 383
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.83 E-value=0.0012 Score=61.05 Aligned_cols=34 Identities=32% Similarity=0.660 Sum_probs=30.0
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeec
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISA 294 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~ 294 (502)
...|+|.|++|+|||++++.++..++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3579999999999999999999999988876654
No 384
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.83 E-value=0.003 Score=63.85 Aligned_cols=70 Identities=24% Similarity=0.368 Sum_probs=45.8
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc-----CceEEeec-cchhh---h----hhhhhHHHHHHHHHHHHhcCCeEEEEc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN-----ATFFSISA-ASLTS---K----YVGQGEKLVRALFAMARELQPSIIFID 327 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~i~~-s~l~~---~----~~g~~~~~~~~lf~~a~~~~p~iLfLD 327 (502)
..+++++||+|+|||++++++..... ..++.+.- .++.- . ...........++..+.++.|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 47899999999999999999998762 22222211 01110 0 001111135678888888999999999
Q ss_pred CCc
Q psy2637 328 EVD 330 (502)
Q Consensus 328 EId 330 (502)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 994
No 385
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.83 E-value=0.001 Score=63.08 Aligned_cols=113 Identities=24% Similarity=0.297 Sum_probs=57.8
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccCh
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGE 340 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~ 340 (502)
...++|.|+-|+|||++.+.|.... +.-+..... ..+....+ ... -++.|||++.+... .
T Consensus 52 d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~------~kd~~~~l---~~~---~iveldEl~~~~k~----~ 111 (198)
T PF05272_consen 52 DTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFD------DKDFLEQL---QGK---WIVELDELDGLSKK----D 111 (198)
T ss_pred ceeeeEecCCcccHHHHHHHHhHHh----ccCccccCC------CcHHHHHH---HHh---HheeHHHHhhcchh----h
Confidence 3457889999999999999996552 211111110 01111111 111 48899999877411 1
Q ss_pred hHHHHHHHHHHHHHhc----cCCCCCCCcEEEEEEcCCCCCCc-HHHHccccceeeecC
Q psy2637 341 HEASRRLKTEFLLEFD----GLHSNSEHRLLVMGATNRPQELD-EAVLRRFSKRIYVTL 394 (502)
Q Consensus 341 ~~~~~~~~~~ll~~l~----g~~~~~~~~v~vIaaTN~~~~l~-~~l~rRf~~~I~i~~ 394 (502)
.+....++..-..... ......+....+|||||..+-|. +.=-||| ..|.+..
T Consensus 112 ~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~~ 169 (198)
T PF05272_consen 112 VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVSK 169 (198)
T ss_pred HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEcC
Confidence 1222211111111111 11122234567899999977444 3344688 4676665
No 386
>PRK13946 shikimate kinase; Provisional
Probab=96.83 E-value=0.0011 Score=61.97 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=30.1
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
...|++.|.+|+|||++++.+|+.++.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 467999999999999999999999999988765
No 387
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.00089 Score=61.14 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=25.9
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
.++|+|.|||||||+++.++ .++.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 8887766554
No 388
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.82 E-value=0.00087 Score=57.92 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.8
Q ss_pred eEEecCCCCcHHHHHHHHHHHc
Q psy2637 264 LLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~ 285 (502)
|+|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999986
No 389
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.82 E-value=0.012 Score=53.78 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=42.7
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHcc--CceEEeeccchhh--------hhhhh-----hHHHHHHHHHHHHhcCCeE
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACN--ATFFSISAASLTS--------KYVGQ-----GEKLVRALFAMARELQPSI 323 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~--~~fv~i~~s~l~~--------~~~g~-----~~~~~~~lf~~a~~~~p~i 323 (502)
.++..+.|.||+|+|||+|.+.++.... .--+.++...+.. ...+. .....+-.+..+-..+|.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL 103 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence 4567899999999999999999997652 1112222221110 00110 0111133445555678899
Q ss_pred EEEcCCc
Q psy2637 324 IFIDEVD 330 (502)
Q Consensus 324 LfLDEId 330 (502)
+++||-.
T Consensus 104 lllDEP~ 110 (163)
T cd03216 104 LILDEPT 110 (163)
T ss_pred EEEECCC
Confidence 9999984
No 390
>PF13479 AAA_24: AAA domain
Probab=96.81 E-value=0.0043 Score=59.50 Aligned_cols=21 Identities=48% Similarity=0.972 Sum_probs=19.0
Q ss_pred CcceEEecCCCCcHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAV 281 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lArai 281 (502)
+-.++|||+||+|||++|..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 457999999999999999888
No 391
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.81 E-value=0.01 Score=60.06 Aligned_cols=135 Identities=18% Similarity=0.220 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHH
Q psy2637 234 EVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALF 313 (502)
Q Consensus 234 ~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf 313 (502)
.+.++-+.+++...+. +-.....-++++|+.|+|||++++.|..-+|.....+..+...... +. .-|
T Consensus 55 ~~~~~~l~~~lg~~L~------~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~-~~------~~f 121 (304)
T TIGR01613 55 NELIEYLQRVIGYSLT------GNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEF-QE------HRF 121 (304)
T ss_pred HHHHHHHHHHHhHHhc------CCCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhc-cC------CCc
Confidence 3455556665533222 1112346688999999999999999988887554332322222221 11 023
Q ss_pred HHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC--------CCC---CCCcEEEEEEcCCCC---CCc
Q psy2637 314 AMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL--------HSN---SEHRLLVMGATNRPQ---ELD 379 (502)
Q Consensus 314 ~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~--------~~~---~~~~v~vIaaTN~~~---~l~ 379 (502)
..+.-...-+++.||++.-.. ... ..+..+.+. ... ......+|.+||..- .-+
T Consensus 122 ~~a~l~gk~l~~~~E~~~~~~----~~~--------~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~ 189 (304)
T TIGR01613 122 GLARLEGKRAVIGDEVQKGYR----DDE--------STFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFD 189 (304)
T ss_pred hhhhhcCCEEEEecCCCCCcc----ccH--------HhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCC
Confidence 333333346889999863200 001 122222211 000 012456778888753 345
Q ss_pred HHHHccccceeeecC
Q psy2637 380 EAVLRRFSKRIYVTL 394 (502)
Q Consensus 380 ~~l~rRf~~~I~i~~ 394 (502)
.++.||+- +|.|+.
T Consensus 190 ~a~~RR~~-vi~f~~ 203 (304)
T TIGR01613 190 GGIKRRLR-IIPFTK 203 (304)
T ss_pred hhheeeEE-EEeccC
Confidence 78999984 777654
No 392
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.78 E-value=0.007 Score=58.35 Aligned_cols=74 Identities=24% Similarity=0.388 Sum_probs=46.8
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc----cCceEEeeccchhhh--------------------------h-------
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC----NATFFSISAASLTSK--------------------------Y------- 301 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~i~~s~l~~~--------------------------~------- 301 (502)
+.+..+|+.||||||||+++..++... +.+.+.++..+-... +
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~ 96 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWS 96 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-T
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccccc
Confidence 456789999999999999999877543 556555554322210 0
Q ss_pred hhhhHHHHHHHHHHHHhcCCeEEEEcCCcch
Q psy2637 302 VGQGEKLVRALFAMARELQPSIIFIDEVDSV 332 (502)
Q Consensus 302 ~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L 332 (502)
..........+.+.....++..++||-+..+
T Consensus 97 ~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 97 PNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp SCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 0112233344555556667799999999988
No 393
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.78 E-value=0.0014 Score=63.58 Aligned_cols=31 Identities=29% Similarity=0.537 Sum_probs=27.1
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
..++|.||||+||||+|+.+|+.++.+++.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 4599999999999999999999998766554
No 394
>PRK10436 hypothetical protein; Provisional
Probab=96.78 E-value=0.0043 Score=66.28 Aligned_cols=93 Identities=14% Similarity=0.284 Sum_probs=56.5
Q ss_pred CCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc---eEEee-ccchhhh
Q psy2637 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT---FFSIS-AASLTSK 300 (502)
Q Consensus 225 ~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~---fv~i~-~s~l~~~ 300 (502)
.+++++.-.+...+.+.+++. .+..-+|++||+|+||||+..++....+.+ ++.+- ..++.-.
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~-------------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~ 261 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQ-------------QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLA 261 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHH-------------hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCC
Confidence 356666555556666666652 234568999999999999998877776432 22221 0111000
Q ss_pred -----hhh-hhHHHHHHHHHHHHhcCCeEEEEcCCc
Q psy2637 301 -----YVG-QGEKLVRALFAMARELQPSIIFIDEVD 330 (502)
Q Consensus 301 -----~~g-~~~~~~~~lf~~a~~~~p~iLfLDEId 330 (502)
-++ .........+..+.++.|.+|++.||-
T Consensus 262 gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 262 GINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 001 111224566777778899999999995
No 395
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.76 E-value=0.0043 Score=63.20 Aligned_cols=70 Identities=23% Similarity=0.315 Sum_probs=45.7
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc-----CceEEee-ccchhh------hhhhhhHHHHHHHHHHHHhcCCeEEEEcC
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN-----ATFFSIS-AASLTS------KYVGQGEKLVRALFAMARELQPSIIFIDE 328 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~i~-~s~l~~------~~~g~~~~~~~~lf~~a~~~~p~iLfLDE 328 (502)
..+++++|++|+||||+++++..... ..++.+. ..++.. .+.....-....++..+.++.|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 46899999999999999999998751 2222221 111110 00011112246778888889999999999
Q ss_pred Cc
Q psy2637 329 VD 330 (502)
Q Consensus 329 Id 330 (502)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 94
No 396
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.76 E-value=0.0041 Score=61.05 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=27.3
Q ss_pred eEEecCCCCcHHHHHHHHHHHc---cCceEEeeccch
Q psy2637 264 LLLFGPPGNGKTMLARAVATAC---NATFFSISAASL 297 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l 297 (502)
|+|+|+||+||||+|+.+++.+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999987 355666655444
No 397
>PLN02674 adenylate kinase
Probab=96.75 E-value=0.0015 Score=63.78 Aligned_cols=37 Identities=22% Similarity=0.489 Sum_probs=29.9
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
...++|.||||+||+|+|+.+|+.++. ..++++++..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~--~his~GdllR 67 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCL--CHLATGDMLR 67 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC--cEEchhHHHH
Confidence 467999999999999999999999875 4555555543
No 398
>PRK14528 adenylate kinase; Provisional
Probab=96.73 E-value=0.0015 Score=61.33 Aligned_cols=30 Identities=27% Similarity=0.579 Sum_probs=26.3
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
..+++.||||+|||++|+.+++.++.+.+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 358999999999999999999999876654
No 399
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.72 E-value=0.0045 Score=66.69 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=55.5
Q ss_pred CCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC---ceEEeec-cchhhh
Q psy2637 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA---TFFSISA-ASLTSK 300 (502)
Q Consensus 225 ~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~---~fv~i~~-s~l~~~ 300 (502)
.+++++.-..+..+.+..++.. +..-++++||+|+||||+..++...++. .++.+.- .++.-.
T Consensus 219 ~~l~~Lg~~~~~~~~l~~~~~~-------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~ 285 (486)
T TIGR02533 219 LDLETLGMSPELLSRFERLIRR-------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIE 285 (486)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecC
Confidence 3566665555566666665521 2345789999999999999988777642 2333211 111100
Q ss_pred -----hh-hhhHHHHHHHHHHHHhcCCeEEEEcCCc
Q psy2637 301 -----YV-GQGEKLVRALFAMARELQPSIIFIDEVD 330 (502)
Q Consensus 301 -----~~-g~~~~~~~~lf~~a~~~~p~iLfLDEId 330 (502)
.+ ..........+..+.++.|++|++.||-
T Consensus 286 ~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 286 GIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred CCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 00 1111123456667778899999999995
No 400
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.72 E-value=0.0037 Score=64.64 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.4
Q ss_pred ceEEecCCCCcHHHHHHHHHHHc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~ 285 (502)
.+++.|.||||||.||-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 401
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.72 E-value=0.066 Score=57.76 Aligned_cols=109 Identities=11% Similarity=0.210 Sum_probs=78.4
Q ss_pred CeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHH
Q psy2637 321 PSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTR 400 (502)
Q Consensus 321 p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er 400 (502)
|++++|.|++.++.+ ....+.+..+...... . ...+|+.+.+ ..+++.+.+-+ .++.+++|+.+|+
T Consensus 82 ~~~~vl~d~h~~~~~------~~~~r~l~~l~~~~~~----~-~~~~i~~~~~--~~~p~el~~~~-~~~~~~lP~~~ei 147 (489)
T CHL00195 82 PALFLLKDFNRFLND------ISISRKLRNLSRILKT----Q-PKTIIIIASE--LNIPKELKDLI-TVLEFPLPTESEI 147 (489)
T ss_pred CcEEEEecchhhhcc------hHHHHHHHHHHHHHHh----C-CCEEEEEcCC--CCCCHHHHhce-eEEeecCcCHHHH
Confidence 689999999988732 1122222233332221 1 2244444443 46777776655 4889999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy2637 401 KSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAA 443 (502)
Q Consensus 401 ~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~ 443 (502)
.+++..+....+..+++..++.+++.+.|++..+++.++..+.
T Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~ 190 (489)
T CHL00195 148 KKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKII 190 (489)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999988887777889999999999999999999999888654
No 402
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.71 E-value=0.017 Score=55.40 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.2
Q ss_pred cceEEecCCCCcHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVAT 283 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~ 283 (502)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999984
No 403
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.01 Score=61.23 Aligned_cols=78 Identities=24% Similarity=0.409 Sum_probs=58.3
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc--cCceEEeeccchhhh------hhh--------hhHHHHHHHHHHHHhcCCe
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC--NATFFSISAASLTSK------YVG--------QGEKLVRALFAMARELQPS 322 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~--~~~fv~i~~s~l~~~------~~g--------~~~~~~~~lf~~a~~~~p~ 322 (502)
.++.-+||-|.||.|||||.-.++..+ ..+.++++..+-... -.+ ..+..+..++..+...+|.
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~ 170 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPD 170 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCC
Confidence 566778999999999999999888877 347788876543321 111 1344567788888889999
Q ss_pred EEEEcCCcchhccc
Q psy2637 323 IIFIDEVDSVLSER 336 (502)
Q Consensus 323 iLfLDEId~L~~~~ 336 (502)
+++||-|.-+....
T Consensus 171 lvVIDSIQT~~s~~ 184 (456)
T COG1066 171 LVVIDSIQTLYSEE 184 (456)
T ss_pred EEEEeccceeeccc
Confidence 99999999887654
No 404
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.70 E-value=0.0016 Score=60.63 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=27.1
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEeeccch
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l 297 (502)
..++|.||||+||||+|+.+++.++.. .++++++
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~--~~~~g~~ 37 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFT--HLSTGDL 37 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCc--EEeHHHH
Confidence 457899999999999999999998754 4444443
No 405
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.69 E-value=0.0051 Score=62.68 Aligned_cols=70 Identities=26% Similarity=0.450 Sum_probs=45.7
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc-----cCceEEee-ccchhh---h---hhhhhHHHHHHHHHHHHhcCCeEEEEcC
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC-----NATFFSIS-AASLTS---K---YVGQGEKLVRALFAMARELQPSIIFIDE 328 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~i~-~s~l~~---~---~~g~~~~~~~~lf~~a~~~~p~iLfLDE 328 (502)
..++++.|++|+|||+++++++... ...++.+. ..++.- . +.....-....++..+.++.|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5789999999999999999999863 12222211 111110 0 0001112346788888899999999999
Q ss_pred Cc
Q psy2637 329 VD 330 (502)
Q Consensus 329 Id 330 (502)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 94
No 406
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.69 E-value=0.0067 Score=68.58 Aligned_cols=25 Identities=36% Similarity=0.654 Sum_probs=21.8
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.+.++|+|+||||||++++++...+
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999997765
No 407
>PRK13764 ATPase; Provisional
Probab=96.68 E-value=0.002 Score=70.62 Aligned_cols=71 Identities=23% Similarity=0.371 Sum_probs=41.8
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccC---ceEEee-ccchh-----hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNA---TFFSIS-AASLT-----SKYVGQGEKLVRALFAMARELQPSIIFIDEVD 330 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~---~fv~i~-~s~l~-----~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId 330 (502)
...++|++||||+||||++++++..+.. .+..+. ..++. ..+.. ...........+....|.++++||+-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 3578999999999999999999988742 121221 11111 11100 00011223333456789999999985
Q ss_pred c
Q psy2637 331 S 331 (502)
Q Consensus 331 ~ 331 (502)
.
T Consensus 335 d 335 (602)
T PRK13764 335 K 335 (602)
T ss_pred C
Confidence 3
No 408
>PTZ00202 tuzin; Provisional
Probab=96.68 E-value=0.1 Score=54.95 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=47.3
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeecc
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAA 295 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s 295 (502)
...+++|.+....++...+. +.. ..+.-+.|+||+|+|||++++.+....+.+.+.+|..
T Consensus 260 ~~~~FVGReaEla~Lr~VL~----------~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLR----------RLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CccCCCCcHHHHHHHHHHHh----------ccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 46789999999999988873 221 1235778999999999999999999888776666665
No 409
>PRK06696 uridine kinase; Validated
Probab=96.68 E-value=0.0036 Score=60.39 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=30.1
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccch
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASL 297 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l 297 (502)
.+.-|.|.|++|+||||+|+.|+..+ +.+++.+++.++
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 34568899999999999999999998 556666555444
No 410
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.68 E-value=0.081 Score=55.88 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=28.3
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeecc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAA 295 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s 295 (502)
++..++|+|++|+||||++..+|..+ +..+.-+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 35678999999999999999999876 4555555553
No 411
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.19 Score=54.31 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.+..+.|+||+|+|||+++..|+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45778899999999999999998754
No 412
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.67 E-value=0.012 Score=58.42 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=26.3
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc----cCceEEeec
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC----NATFFSISA 294 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~i~~ 294 (502)
++..++|.|+||+|||+++..++... +.+++.++.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 45678999999999999999887764 445554443
No 413
>PF13245 AAA_19: Part of AAA domain
Probab=96.67 E-value=0.0025 Score=50.69 Aligned_cols=24 Identities=42% Similarity=0.642 Sum_probs=17.6
Q ss_pred cceEEecCCCCcHH-HHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKT-MLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT-~lAraia~~~ 285 (502)
..+++.|||||||| ++++.++...
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44566999999999 5666666554
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.66 E-value=0.014 Score=55.43 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.7
Q ss_pred CcceEEecCCCCcHHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVAT 283 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~ 283 (502)
+..++|+||.|+|||++.+.|+.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 35789999999999999999994
No 415
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.65 E-value=0.0026 Score=65.43 Aligned_cols=71 Identities=25% Similarity=0.488 Sum_probs=46.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccC--ceEEeec-cchhh--h------h----hhhhHHHHHHHHHHHHhcCCeEE
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNA--TFFSISA-ASLTS--K------Y----VGQGEKLVRALFAMARELQPSII 324 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~--~fv~i~~-s~l~~--~------~----~g~~~~~~~~lf~~a~~~~p~iL 324 (502)
...++|+.||+|+||||+++++...... ..+.+.- .++.- . + .+...-....++..+.+..|..|
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~I 240 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI 240 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeE
Confidence 3578999999999999999999987632 2222110 11100 0 0 01111224567888888999999
Q ss_pred EEcCCc
Q psy2637 325 FIDEVD 330 (502)
Q Consensus 325 fLDEId 330 (502)
++.|+-
T Consensus 241 ivGEiR 246 (344)
T PRK13851 241 LLGEMR 246 (344)
T ss_pred EEEeeC
Confidence 999994
No 416
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.65 E-value=0.0065 Score=54.81 Aligned_cols=34 Identities=24% Similarity=0.483 Sum_probs=27.3
Q ss_pred eEEecCCCCcHHHHHHHHHHHc---cCceEEeeccch
Q psy2637 264 LLLFGPPGNGKTMLARAVATAC---NATFFSISAASL 297 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l 297 (502)
++|+|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999988 545566654433
No 417
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.65 E-value=0.0087 Score=53.62 Aligned_cols=70 Identities=23% Similarity=0.389 Sum_probs=40.9
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccC--ceEEeecc---chhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNA--TFFSISAA---SLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVD 330 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~--~fv~i~~s---~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId 330 (502)
.++..+.|.||+|+|||++++.++..... --+.++.. .+... ....+.. +-.+..+--.+|.++++||-.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-lS~G~~~-rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-LSGGEKM-RLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-CCHHHHH-HHHHHHHHhcCCCEEEEeCCc
Confidence 45577899999999999999999986521 01111110 00000 1111111 223344455688899999985
No 418
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.058 Score=56.88 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=22.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.+..+.|.||+|+||||+++.||..+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998764
No 419
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.65 E-value=0.0031 Score=62.49 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=46.1
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCc----eEEe---------eccch-hhhhhhhhHHHHHHHHHHHHhcCCeEEEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNAT----FFSI---------SAASL-TSKYVGQGEKLVRALFAMARELQPSIIFI 326 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~----fv~i---------~~s~l-~~~~~g~~~~~~~~lf~~a~~~~p~iLfL 326 (502)
..-||++||+|+||||...++-...|.. .+.+ +-..+ ...-+|.........+..|.+..|+||++
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlv 204 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILV 204 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEE
Confidence 3457889999999999999998887532 2221 11111 11223333333455667777889999999
Q ss_pred cCCcch
Q psy2637 327 DEVDSV 332 (502)
Q Consensus 327 DEId~L 332 (502)
-|+-.+
T Consensus 205 GEmRD~ 210 (353)
T COG2805 205 GEMRDL 210 (353)
T ss_pred eccccH
Confidence 999544
No 420
>PRK04328 hypothetical protein; Provisional
Probab=96.64 E-value=0.025 Score=55.64 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=26.2
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeec
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISA 294 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~ 294 (502)
.++..+|++||||+|||+++..++.+. +.+.+.++.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 456789999999999999998876542 444444443
No 421
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.64 E-value=0.0024 Score=60.93 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=17.0
Q ss_pred ceEEecCCCCcHHHHHHHHHHHc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~ 285 (502)
-.++.||||||||+++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 38899999999997766666554
No 422
>PRK02496 adk adenylate kinase; Provisional
Probab=96.63 E-value=0.0017 Score=60.50 Aligned_cols=29 Identities=34% Similarity=0.579 Sum_probs=25.4
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
.++|.||||+|||++|+.+++.++.+.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48899999999999999999998866554
No 423
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.62 E-value=0.01 Score=58.62 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=26.8
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeec
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISA 294 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~ 294 (502)
.++..++++||||||||++|..++... +.+.+.++.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 446778999999999999999887653 445554443
No 424
>PLN02200 adenylate kinase family protein
Probab=96.62 E-value=0.0021 Score=62.62 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=30.0
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
+..++|.|+||+||||+|+.+++.++.+ .++++++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 4568899999999999999999998754 566666654
No 425
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.62 E-value=0.0018 Score=61.81 Aligned_cols=33 Identities=36% Similarity=0.640 Sum_probs=26.9
Q ss_pred eEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
|+|.||||+|||++|+.+++.++.+.+. ++++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdll 34 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLL 34 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHH
Confidence 7899999999999999999998865544 44443
No 426
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.61 E-value=0.0075 Score=56.13 Aligned_cols=70 Identities=20% Similarity=0.193 Sum_probs=41.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc--CceEEeeccc---hhhhh-hhhhHHHHHHHHHHHHhcCCeEEEEcCCc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN--ATFFSISAAS---LTSKY-VGQGEKLVRALFAMARELQPSIIFIDEVD 330 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~--~~fv~i~~s~---l~~~~-~g~~~~~~~~lf~~a~~~~p~iLfLDEId 330 (502)
++..+.|.||+|+|||||++.++.... .--+.++... ..... ....++. +-.+..+-...|.++++||--
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~q-rv~laral~~~p~lllLDEPt 99 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQ-RVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHH-HHHHHHHHhcCCCEEEEECCc
Confidence 456788999999999999999998652 1112222211 11110 1112221 223444455688999999984
No 427
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.61 E-value=0.02 Score=52.52 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=18.7
Q ss_pred cceEEecCCCCcHHH-HHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTM-LARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~-lAraia~~~ 285 (502)
..+++.||+|+|||+ ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 689999999999999 555555443
No 428
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.59 E-value=0.002 Score=61.73 Aligned_cols=29 Identities=38% Similarity=0.650 Sum_probs=25.5
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
.|+++||||+|||++|+.+|+.++.+.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48999999999999999999999866554
No 429
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.59 E-value=0.0034 Score=63.77 Aligned_cols=71 Identities=17% Similarity=0.377 Sum_probs=45.3
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccC--ceEEeec-cchhh---hh---------hhhhHHHHHHHHHHHHhcCCeEE
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNA--TFFSISA-ASLTS---KY---------VGQGEKLVRALFAMARELQPSII 324 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~--~fv~i~~-s~l~~---~~---------~g~~~~~~~~lf~~a~~~~p~iL 324 (502)
...+++|.||+|+||||+++++...... ..+.+.- .++.- .. .+...-....++..+....|.+|
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~i 222 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRI 222 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeE
Confidence 3578999999999999999999987631 2222210 11100 00 01111224567777778899999
Q ss_pred EEcCCc
Q psy2637 325 FIDEVD 330 (502)
Q Consensus 325 fLDEId 330 (502)
++||+-
T Consensus 223 i~gE~r 228 (308)
T TIGR02788 223 ILGELR 228 (308)
T ss_pred EEeccC
Confidence 999995
No 430
>PRK04040 adenylate kinase; Provisional
Probab=96.58 E-value=0.0021 Score=60.42 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=24.8
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc--cCce
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC--NATF 289 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~--~~~f 289 (502)
+..++++|+||+||||+++.+++.+ +.++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 3568999999999999999999998 4444
No 431
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.56 E-value=0.0037 Score=56.83 Aligned_cols=39 Identities=28% Similarity=0.390 Sum_probs=31.0
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhh
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTS 299 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~ 299 (502)
+..|.|+|.||+|||++|+++.+.+ +.+.+.++...+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 3568899999999999999999987 66777777766554
No 432
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.56 E-value=0.007 Score=62.97 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.+..++|+||+|+|||++++.+++..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh
Confidence 45679999999999999999999976
No 433
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.019 Score=52.90 Aligned_cols=27 Identities=26% Similarity=0.577 Sum_probs=23.9
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||++.+.++...
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 456788999999999999999999875
No 434
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.55 E-value=0.041 Score=54.68 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=23.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..++|.||+|+|||++++.++..+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l 99 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF 99 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999998876
No 435
>PRK14527 adenylate kinase; Provisional
Probab=96.54 E-value=0.0022 Score=60.31 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=26.0
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFF 290 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv 290 (502)
+..+++.||||+|||++|+.+++.++.+.+
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 467899999999999999999999875543
No 436
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.51 E-value=0.026 Score=52.82 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.6
Q ss_pred eEEecCCCCcHHHHHHHHHH
Q psy2637 264 LLLFGPPGNGKTMLARAVAT 283 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~ 283 (502)
++|+||.|.|||++.+.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999984
No 437
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.50 E-value=0.021 Score=52.96 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=23.8
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||++++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 356788999999999999999999865
No 438
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.50 E-value=0.0075 Score=66.33 Aligned_cols=93 Identities=18% Similarity=0.221 Sum_probs=55.2
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc---eEEee------ccc
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT---FFSIS------AAS 296 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~---fv~i~------~s~ 296 (502)
+++++.-.....+.+.+++. .+...||++||+|+||||+..++.+..+.+ ++.+- ...
T Consensus 294 ~l~~lg~~~~~~~~l~~~~~-------------~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~~ 360 (564)
T TIGR02538 294 DIDKLGFEPDQKALFLEAIH-------------KPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPG 360 (564)
T ss_pred CHHHcCCCHHHHHHHHHHHH-------------hcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCCC
Confidence 45555545555555655552 234568899999999999998888877422 22211 000
Q ss_pred hhhhhh-hhhHHHHHHHHHHHHhcCCeEEEEcCCcc
Q psy2637 297 LTSKYV-GQGEKLVRALFAMARELQPSIIFIDEVDS 331 (502)
Q Consensus 297 l~~~~~-g~~~~~~~~lf~~a~~~~p~iLfLDEId~ 331 (502)
+....+ ..........+..+.++.|.+|++.||-.
T Consensus 361 ~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 361 INQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred ceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 000000 11112235567777888999999999953
No 439
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.49 E-value=0.012 Score=57.76 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.7
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
..+..+-|.|++|+||||++|.+..-.
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLE 63 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCc
Confidence 345788999999999999999999865
No 440
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.48 E-value=0.0025 Score=49.52 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=20.5
Q ss_pred eEEecCCCCcHHHHHHHHHHHc
Q psy2637 264 LLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~ 285 (502)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999985
No 441
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.48 E-value=0.0043 Score=55.90 Aligned_cols=34 Identities=32% Similarity=0.578 Sum_probs=27.6
Q ss_pred EecCCCCcHHHHHHHHHHHccCceEEeeccchhhhh
Q psy2637 266 LFGPPGNGKTMLARAVATACNATFFSISAASLTSKY 301 (502)
Q Consensus 266 L~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~ 301 (502)
|.||||+||+++|+.||+..+ ++.+++.++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~~ 34 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLREE 34 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceechHHHHHHH
Confidence 689999999999999999986 5666667665543
No 442
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.48 E-value=0.0092 Score=54.93 Aligned_cols=32 Identities=31% Similarity=0.385 Sum_probs=25.9
Q ss_pred eEEecCCCCcHHHHHHHHHHHc---cCceEEeecc
Q psy2637 264 LLLFGPPGNGKTMLARAVATAC---NATFFSISAA 295 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s 295 (502)
++++||||+|||+++..++..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6889999999999999999876 4556666654
No 443
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.47 E-value=0.18 Score=51.04 Aligned_cols=148 Identities=15% Similarity=0.218 Sum_probs=81.1
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh-------------------hhh-hHHHHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY-------------------VGQ-GEKLVRALFAMA 316 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~-------------------~g~-~~~~~~~lf~~a 316 (502)
.+..+|++|-.|+||||.+-.+|+.+ +..++-..|..+...- .|. ...-.-..++.|
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 36778999999999999999999987 5555555554444210 111 222334556777
Q ss_pred HhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEE-EEcCCCCCCcHH-HHc---cccceee
Q psy2637 317 RELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVM-GATNRPQELDEA-VLR---RFSKRIY 391 (502)
Q Consensus 317 ~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vI-aaTN~~~~l~~~-l~r---Rf~~~I~ 391 (502)
...+.++|++|=+.+|..+. -+-.-+..+.+.+.......+..++++ =+|.-...+..+ .|+ .++ -+.
T Consensus 218 kar~~DvvliDTAGRLhnk~------nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~-GiI 290 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKK------NLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLD-GII 290 (340)
T ss_pred HHcCCCEEEEeCcccccCch------hHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCc-eEE
Confidence 77788999999998884331 111112223333333333333345554 444433333322 222 333 455
Q ss_pred ecCCCHHHHHHHHHHHHhhcCCC
Q psy2637 392 VTLPDSKTRKSLLEKLLNKHGNP 414 (502)
Q Consensus 392 i~~P~~~er~~il~~~l~~~~~~ 414 (502)
++..+-..+-.++-.+...++.+
T Consensus 291 lTKlDgtAKGG~il~I~~~l~~P 313 (340)
T COG0552 291 LTKLDGTAKGGIILSIAYELGIP 313 (340)
T ss_pred EEecccCCCcceeeeHHHHhCCC
Confidence 55556566655555555444443
No 444
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.47 E-value=0.17 Score=54.37 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=22.3
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
+..++|.||+|+||||++..||..+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4578899999999999999999865
No 445
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.46 E-value=0.0058 Score=54.02 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=25.4
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccC
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNA 287 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~ 287 (502)
.++..++|.|+.|+|||++++.+++.++.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 34567899999999999999999999864
No 446
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.46 E-value=0.01 Score=56.21 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=31.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc-cCceEEeeccchhhh
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC-NATFFSISAASLTSK 300 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~-~~~fv~i~~s~l~~~ 300 (502)
.|.-+++.|+||+|||+++..+...+ ...++.++...+...
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 45678889999999999999999988 778888988776543
No 447
>PRK04182 cytidylate kinase; Provisional
Probab=96.46 E-value=0.0028 Score=58.44 Aligned_cols=29 Identities=38% Similarity=0.568 Sum_probs=26.2
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
.|+|.|++|+|||++++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999999988764
No 448
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.45 E-value=0.0079 Score=60.53 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=26.7
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEeeccch
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l 297 (502)
.-+++.|+||+||||+|+.+++.+. .++.++...+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~ 37 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDL 37 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHH
Confidence 4578899999999999999999983 2344444444
No 449
>KOG2383|consensus
Probab=96.44 E-value=0.036 Score=57.06 Aligned_cols=27 Identities=44% Similarity=0.698 Sum_probs=23.6
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.+|++++|||.-|||||+|.-.+...+
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcC
Confidence 458999999999999999998887555
No 450
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.017 Score=52.21 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=23.7
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||+++++++...
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345788999999999999999999866
No 451
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.43 E-value=0.032 Score=52.84 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.6
Q ss_pred cceEEecCCCCcHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVA 282 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia 282 (502)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 452
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.43 E-value=0.018 Score=59.88 Aligned_cols=27 Identities=26% Similarity=0.536 Sum_probs=24.0
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
.+..+++.||.|||||++.++|...+.
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 457899999999999999999998773
No 453
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.42 E-value=0.039 Score=56.14 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=27.3
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---------cCceEEeeccc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---------NATFFSISAAS 296 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---------~~~fv~i~~s~ 296 (502)
..+..+.|+||||+|||.++..++-.. +...++++...
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 345667899999999999998877422 34566666543
No 454
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.41 E-value=0.003 Score=57.71 Aligned_cols=29 Identities=34% Similarity=0.590 Sum_probs=25.9
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
-|.|+|++|+|||++|+.+++.++.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 37899999999999999999999888654
No 455
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.41 E-value=0.021 Score=56.72 Aligned_cols=90 Identities=20% Similarity=0.286 Sum_probs=56.7
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHH
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKL 308 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~ 308 (502)
+++=-+++++-+.+.. +.+..+..+.||.|.+|+||.++++..|.-++..++.+....-.+ ..+....
T Consensus 9 ~lVlf~~ai~hi~ri~----------RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARIS----------RVLSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHH----------HHHCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHH----------HHHcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 3444555666666554 334566789999999999999999999998898888876543211 2333444
Q ss_pred HHHHHHHHHh-cCCeEEEEcCCc
Q psy2637 309 VRALFAMARE-LQPSIIFIDEVD 330 (502)
Q Consensus 309 ~~~lf~~a~~-~~p~iLfLDEId 330 (502)
++.++..|.- .+|.+++++|-+
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHHhccCCCeEEEecCcc
Confidence 5666665553 356788887753
No 456
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.40 E-value=0.0054 Score=62.29 Aligned_cols=35 Identities=29% Similarity=0.506 Sum_probs=31.1
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
.+...|.|+|++|+|||++++.+++.++.+|+.++
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 45678999999999999999999999999998543
No 457
>PRK08233 hypothetical protein; Provisional
Probab=96.40 E-value=0.0035 Score=57.95 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=25.8
Q ss_pred cceEEecCCCCcHHHHHHHHHHHcc-CceEEeec
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACN-ATFFSISA 294 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~-~~fv~i~~ 294 (502)
.-|.|.|+||+||||+|+.|+..++ .+.+..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 4577899999999999999999885 44444433
No 458
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.39 E-value=0.008 Score=61.50 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=29.1
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeecc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAA 295 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s 295 (502)
...+.|.|+||+|||+|++.++...+.+++.-...
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R 196 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAR 196 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhH
Confidence 35799999999999999999999988877644333
No 459
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.39 E-value=0.04 Score=52.99 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=27.7
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeecc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAA 295 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s 295 (502)
.++..++|.|+||+|||+++..++... +.+.+.++..
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 345778999999999999999887653 5555555543
No 460
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.38 E-value=0.028 Score=52.26 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=21.9
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHH
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~ 284 (502)
.++..+.|.||+|+|||||.+.+...
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 34567899999999999999999743
No 461
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.37 E-value=0.014 Score=55.21 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=28.8
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~ 300 (502)
.+.|+|++|+|||++++.+++.++.+++ ++..+...
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~ 38 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYARE 38 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHH
Confidence 4789999999999999999998787665 55555433
No 462
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.36 E-value=0.0028 Score=57.83 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=20.9
Q ss_pred eEEecCCCCcHHHHHHHHHHHccCceE
Q psy2637 264 LLLFGPPGNGKTMLARAVATACNATFF 290 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~~~~fv 290 (502)
|.|+|++|||||||++.|++. +.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 76655
No 463
>PRK14526 adenylate kinase; Provisional
Probab=96.35 E-value=0.004 Score=59.69 Aligned_cols=33 Identities=33% Similarity=0.642 Sum_probs=26.4
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEeeccch
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l 297 (502)
.++|.||||+||||+++.+++.++.+++ +++++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~l 34 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDL 34 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChH
Confidence 4789999999999999999998875543 34444
No 464
>PRK01184 hypothetical protein; Provisional
Probab=96.34 E-value=0.0034 Score=58.45 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=24.0
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
-|+|+|+||+||||+++ ++++.+.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999998 788888776543
No 465
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.33 E-value=0.03 Score=65.53 Aligned_cols=75 Identities=15% Similarity=0.308 Sum_probs=46.9
Q ss_pred eEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC--CCcHHHHccccceeeecCCCHHH
Q psy2637 322 SIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ--ELDEAVLRRFSKRIYVTLPDSKT 399 (502)
Q Consensus 322 ~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~--~l~~~l~rRf~~~I~i~~P~~~e 399 (502)
-||+|||+..|..... .. ...++..+-... ....|.+|.+|.+|. .+...++.-|...|.|..-+..+
T Consensus 1142 IVVIIDE~AdLm~~~~-------ke-vE~lI~rLAqkG--RAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~D 1211 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVG-------KK-VEELIARLAQKA--RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKID 1211 (1355)
T ss_pred EEEEEcChHHHHhhhh-------HH-HHHHHHHHHHHh--hhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHHH
Confidence 3899999987753211 11 122222222111 224588888998885 56666677787788888888877
Q ss_pred HHHHHHH
Q psy2637 400 RKSLLEK 406 (502)
Q Consensus 400 r~~il~~ 406 (502)
-..|+-.
T Consensus 1212 SrtILd~ 1218 (1355)
T PRK10263 1212 SRTILDQ 1218 (1355)
T ss_pred HHHhcCC
Confidence 7777643
No 466
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.33 E-value=0.02 Score=64.44 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=45.8
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhh-hh---------------hhhhHHHHHHHHHHHHhc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTS-KY---------------VGQGEKLVRALFAMAREL 319 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~-~~---------------~g~~~~~~~~lf~~a~~~ 319 (502)
.++..++|+||||||||+++..++... +...+.++..+-.. .+ ....+..+..+-......
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~ 137 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSG 137 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcC
Confidence 345678899999999999997655433 45555555433211 00 011122222222233445
Q ss_pred CCeEEEEcCCcchhc
Q psy2637 320 QPSIIFIDEVDSVLS 334 (502)
Q Consensus 320 ~p~iLfLDEId~L~~ 334 (502)
.+.+|+||-+..+.+
T Consensus 138 ~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 138 ALDIVVIDSVAALVP 152 (790)
T ss_pred CCeEEEEcchhhhcc
Confidence 789999999999986
No 467
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.32 E-value=0.02 Score=54.43 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=21.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVAT 283 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~ 283 (502)
.+..+.|.||+|+||||+.|++-.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 456789999999999999999975
No 468
>KOG3928|consensus
Probab=96.30 E-value=0.15 Score=52.79 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=63.1
Q ss_pred CeEEEEcCCcchhc----ccccChh--HHHHHHHHHHHHHhccCCCCCCCcEEEEEEc--CCC--------------CCC
Q psy2637 321 PSIIFIDEVDSVLS----ERKEGEH--EASRRLKTEFLLEFDGLHSNSEHRLLVMGAT--NRP--------------QEL 378 (502)
Q Consensus 321 p~iLfLDEId~L~~----~~~~~~~--~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaT--N~~--------------~~l 378 (502)
|.++.||++..++. .+..... .....+...+...+.+.... .+++.++. .-+ ..+
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~---g~vi~a~s~~~~~~a~~h~gv~~y~pr~ll 392 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTF---GSVIMAISGVTTPSAFGHLGVAPYVPRKLL 392 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhccccc---ceEEEEecccccchhccccccccCCchHhc
Confidence 56888999999987 2222211 12222333333334332222 23344333 111 123
Q ss_pred cHHHHc---cccceeeecCCCHHHHHHHHHHHHhhcCC---CCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy2637 379 DEAVLR---RFSKRIYVTLPDSKTRKSLLEKLLNKHGN---PLSQLELDAVAKLTEGYSGSDLTNLAK 440 (502)
Q Consensus 379 ~~~l~r---Rf~~~I~i~~P~~~er~~il~~~l~~~~~---~l~~~~l~~la~~t~g~s~~dL~~L~~ 440 (502)
++..+. -|. .|+++.++.+|-..++..+++..-. ...++..+++--.+ +.+|+.++.+|.
T Consensus 393 g~egfe~lqpf~-pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 393 GEEGFEALQPFV-PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred CccchhhccCcC-ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 333333 453 6888899999999999988876321 12345566666555 457777777765
No 469
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=96.30 E-value=0.011 Score=46.90 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhhchhccCCchHHHHHHHHHHHHHHHHhHhh
Q psy2637 130 RKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVN 171 (502)
Q Consensus 130 ~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~d~l~k~~~~~ 171 (502)
.+|+.++..|. ..|.+|++++|+.+|+.|+++|.+.+..+
T Consensus 4 ~~Ai~~a~~Av--e~D~~g~y~eA~~~Y~~aie~l~~~~~~~ 43 (76)
T cd02681 4 RDAVQFARLAV--QRDQEGRYSEAVFYYKEAAQLLIYAEMAG 43 (76)
T ss_pred HHHHHHHHHHH--HHHHccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999 77889999999999999999998876553
No 470
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.29 E-value=0.012 Score=58.49 Aligned_cols=68 Identities=26% Similarity=0.388 Sum_probs=35.1
Q ss_pred eEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchh---hhhh-hhhHHHHHHH----HHHHHhcCCeEEEEcCCcch
Q psy2637 264 LLLFGPPGNGKTMLARAVATAC---NATFFSISAASLT---SKYV-GQGEKLVRAL----FAMARELQPSIIFIDEVDSV 332 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~---~~~~-g~~~~~~~~l----f~~a~~~~p~iLfLDEId~L 332 (502)
|+|+|-||+|||++|+.|++.+ +..++.++-..+. ..|. ...++..++. ++.+.. ...+|++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls-~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS-KDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT-T-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc-cCeEEEEeCCchH
Confidence 7899999999999999999976 4555555543333 1121 1223333332 333332 3369999998766
No 471
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.28 E-value=0.23 Score=50.41 Aligned_cols=127 Identities=20% Similarity=0.207 Sum_probs=66.2
Q ss_pred HHHHHHHHHh-c--CCeEEEEcCCcchhccccc------ChhHHHHHHHHHHHHHhccCCCCCCCcEE-EEEEcCC---C
Q psy2637 309 VRALFAMARE-L--QPSIIFIDEVDSVLSERKE------GEHEASRRLKTEFLLEFDGLHSNSEHRLL-VMGATNR---P 375 (502)
Q Consensus 309 ~~~lf~~a~~-~--~p~iLfLDEId~L~~~~~~------~~~~~~~~~~~~ll~~l~g~~~~~~~~v~-vIaaTN~---~ 375 (502)
+..++++... . .|.++-+|+++.++....- ..+.....+...|+..+.+...-.++.++ .+++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 3444544433 2 4678889999999866211 11223334444455554444443333232 2455432 2
Q ss_pred C--CCcHHHHcccc---------------------ceeeecCCCHHHHHHHHHHHHhhcCCC---CCHHHHHHHHHhcCC
Q psy2637 376 Q--ELDEAVLRRFS---------------------KRIYVTLPDSKTRKSLLEKLLNKHGNP---LSQLELDAVAKLTEG 429 (502)
Q Consensus 376 ~--~l~~~l~rRf~---------------------~~I~i~~P~~~er~~il~~~l~~~~~~---l~~~~l~~la~~t~g 429 (502)
. .++.++..+-. ..+.++..+.+|-..++..+....-.. .++...+.+...+.|
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~G 301 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNG 301 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCC
Confidence 2 34444443221 157888889999999998887653222 233344444444443
Q ss_pred CCHHHHH
Q psy2637 430 YSGSDLT 436 (502)
Q Consensus 430 ~s~~dL~ 436 (502)
+++++.
T Consensus 302 -Np~el~ 307 (309)
T PF10236_consen 302 -NPRELE 307 (309)
T ss_pred -CHHHhc
Confidence 555543
No 472
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.27 E-value=0.03 Score=62.95 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=23.0
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..|.|.|++|+|||||+|.+..-.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344569999999999999999999854
No 473
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.26 E-value=0.0041 Score=58.90 Aligned_cols=36 Identities=36% Similarity=0.475 Sum_probs=27.5
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
-++|+||+|||||.+|-++|+..+.|++..+.-...
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y 38 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCY 38 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecc
Confidence 368999999999999999999999999988765543
No 474
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.25 E-value=0.054 Score=49.89 Aligned_cols=27 Identities=37% Similarity=0.693 Sum_probs=23.5
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||+|++.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 345678999999999999999999865
No 475
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.25 E-value=0.012 Score=54.90 Aligned_cols=26 Identities=46% Similarity=0.634 Sum_probs=22.3
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.+.-++|+||||+|||+++..++...
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999998865
No 476
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.25 E-value=0.027 Score=62.34 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=20.9
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
..-.+|+|+||||||++++.+...+
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3568999999999999998877654
No 477
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.25 E-value=0.0054 Score=58.31 Aligned_cols=24 Identities=42% Similarity=0.562 Sum_probs=19.4
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.-+.+.||.|||||++|-+.|-+.
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 568899999999999999998765
No 478
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.23 E-value=0.004 Score=58.23 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=24.7
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceE
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFF 290 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv 290 (502)
..++|.||+|+||||+++.++...+.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 46889999999999999999988765543
No 479
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.23 E-value=0.033 Score=49.75 Aligned_cols=23 Identities=43% Similarity=0.823 Sum_probs=20.3
Q ss_pred cceEEecCCCCcHHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~ 284 (502)
+.++|.||+|+|||+|+++|...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 45899999999999999998863
No 480
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.22 E-value=0.024 Score=52.67 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||++++.++...
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356778999999999999999999865
No 481
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=96.22 E-value=0.00017 Score=70.02 Aligned_cols=53 Identities=11% Similarity=0.039 Sum_probs=47.7
Q ss_pred ccccCcchhhHHHHHHH-HHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEH-HRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~-~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++. .+..++|+.||. ++.+.-+..+..|| ||+.|||+..
T Consensus 52 ~lP~~dG~~~~~~iR~~~~~~~PIi~Lta~-------~~~~d~v~gl~~GADDYl~KPf~~~ 106 (229)
T COG0745 52 MLPDLDGLELCRRLRAKKGSGPPIIVLTAR-------DDEEDRVLGLEAGADDYLTKPFSPR 106 (229)
T ss_pred CCCCCCHHHHHHHHHhhcCCCCcEEEEECC-------CcHHHHHHHHhCcCCeeeeCCCCHH
Confidence 38999999999999964 556779999999 88999999999999 9999999984
No 482
>PRK14529 adenylate kinase; Provisional
Probab=96.20 E-value=0.0048 Score=59.55 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=25.0
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceE
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFF 290 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv 290 (502)
.++|.||||+||||+++.|++.++.+++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 4789999999999999999999986654
No 483
>KOG0060|consensus
Probab=96.19 E-value=0.02 Score=61.37 Aligned_cols=27 Identities=37% Similarity=0.597 Sum_probs=23.8
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
..+.++||+||+|||||+|.|.++.-.
T Consensus 459 ~~g~~LLItG~sG~GKtSLlRvlggLW 485 (659)
T KOG0060|consen 459 PSGQNLLITGPSGCGKTSLLRVLGGLW 485 (659)
T ss_pred cCCCeEEEECCCCCchhHHHHHHhccc
Confidence 446899999999999999999999754
No 484
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.19 E-value=0.074 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=19.8
Q ss_pred ceEEecCCCCcHHHHHHHHHHHc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~ 285 (502)
-+.+|+++|+|||++|-.+|-..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46788899999999999988765
No 485
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.18 E-value=0.086 Score=54.25 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=27.0
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---------cCceEEeeccc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---------NATFFSISAAS 296 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---------~~~fv~i~~s~ 296 (502)
..+....|+||||||||.++..++-.. +...+.++...
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 344567899999999999999887432 24556666543
No 486
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.17 E-value=0.02 Score=61.84 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=52.1
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhh------h----------------------hhHH
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYV------G----------------------QGEK 307 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~------g----------------------~~~~ 307 (502)
.++..+|+.||||+|||+++-.++... +.+.+.++..+-...+. | ..+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~ 340 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED 340 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence 456779999999999999999998865 44555555433321100 0 0134
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCcchhc
Q psy2637 308 LVRALFAMARELQPSIIFIDEVDSVLS 334 (502)
Q Consensus 308 ~~~~lf~~a~~~~p~iLfLDEId~L~~ 334 (502)
.+..+.+.+...+|.+|+||-+..+..
T Consensus 341 ~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 341 HLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 456666777777889999999987743
No 487
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.17 E-value=2.1 Score=44.95 Aligned_cols=203 Identities=21% Similarity=0.257 Sum_probs=106.4
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhh---------------hhhhh-----hHHHHHHHHHH
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTS---------------KYVGQ-----GEKLVRALFAM 315 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~---------------~~~g~-----~~~~~~~lf~~ 315 (502)
.+|..|+++|=-|+||||.|-.+|..+ +....-+.|....- .+.+. .......-++.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 457789999999999999999999987 44444444432221 11111 12234556677
Q ss_pred HHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC--CCcHHHHccccc-eeee
Q psy2637 316 ARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ--ELDEAVLRRFSK-RIYV 392 (502)
Q Consensus 316 a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~--~l~~~l~rRf~~-~I~i 392 (502)
+......++++|=+..+.- ...+..++...-+-. .+..-++|+-++--.+ ....++..+++. -+.+
T Consensus 178 ak~~~~DvvIvDTAGRl~i---------de~Lm~El~~Ik~~~--~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIl 246 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHI---------DEELMDELKEIKEVI--NPDETLLVVDAMIGQDAVNTAKAFNEALGITGVIL 246 (451)
T ss_pred HHHcCCCEEEEeCCCcccc---------cHHHHHHHHHHHhhc--CCCeEEEEEecccchHHHHHHHHHhhhcCCceEEE
Confidence 7777778999998877622 222333332222211 1222234443433222 223344444332 3556
Q ss_pred cCCCHHHHHHHHHHHHhhcCCC------------CCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcc
Q psy2637 393 TLPDSKTRKSLLEKLLNKHGNP------------LSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDL 460 (502)
Q Consensus 393 ~~P~~~er~~il~~~l~~~~~~------------l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~ 460 (502)
+..|-+.|---.-......+.+ +.....++++.+.-| -+|+..|+..+....-.+-.... .-.+
T Consensus 247 TKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILG--MGDv~sLvEk~~~~~d~e~a~~~--~~kl 322 (451)
T COG0541 247 TKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILG--MGDVLSLIEKAEEVVDEEEAEKL--AEKL 322 (451)
T ss_pred EcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcC--cccHHHHHHHHHHhhhHHHHHHH--HHHH
Confidence 6666666654433333322222 333455677776655 35777777766643322111110 1111
Q ss_pred cCCCcccHHHHHHHHHh
Q psy2637 461 KSVRNISYRDFLESLKR 477 (502)
Q Consensus 461 ~~~~~It~~d~~~al~~ 477 (502)
. ....+.+||.+.+..
T Consensus 323 ~-~g~FtL~Df~~Ql~~ 338 (451)
T COG0541 323 K-KGKFTLEDFLEQLEQ 338 (451)
T ss_pred H-hCCCCHHHHHHHHHH
Confidence 1 234888888877663
No 488
>PLN02199 shikimate kinase
Probab=96.16 E-value=0.0053 Score=61.32 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=30.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
++.+|+|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 3578999999999999999999999999987654
No 489
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.15 E-value=0.056 Score=51.46 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.9
Q ss_pred cceEEecCCCCcHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVAT 283 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~ 283 (502)
..++|+||+|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999974
No 490
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.15 E-value=0.054 Score=49.63 Aligned_cols=27 Identities=44% Similarity=0.700 Sum_probs=23.8
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||++++.++...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356778999999999999999999865
No 491
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.15 E-value=0.023 Score=65.88 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=53.6
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh----hhhhHHHHHHHHHHH-H----hcCCeEEEEcCC
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY----VGQGEKLVRALFAMA-R----ELQPSIIFIDEV 329 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~----~g~~~~~~~~lf~~a-~----~~~p~iLfLDEI 329 (502)
..++|.|++|||||++.+++.... +..++-+..+.....- .|.....+..++... . .....+|+|||+
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEA 442 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEA 442 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECc
Confidence 357799999999999988876544 4444444333222111 122222233322110 0 123369999999
Q ss_pred cchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCC
Q psy2637 330 DSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQEL 378 (502)
Q Consensus 330 d~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l 378 (502)
..+. .+.+..++.... ..+.++++|+-++....+
T Consensus 443 SMv~-----------~~~m~~LL~~a~----~~garvVLVGD~~QLpsV 476 (988)
T PRK13889 443 GMVG-----------TRQLERVLSHAA----DAGAKVVLVGDPQQLQAI 476 (988)
T ss_pred ccCC-----------HHHHHHHHHhhh----hCCCEEEEECCHHHcCCC
Confidence 7662 112333443222 123567777777654444
No 492
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.11 E-value=0.025 Score=64.28 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=40.3
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhh----hhhhhHHHHHHHH-HHHH----hcCCeEEEEcC
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSK----YVGQGEKLVRALF-AMAR----ELQPSIIFIDE 328 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~----~~g~~~~~~~~lf-~~a~----~~~p~iLfLDE 328 (502)
..-++|.|+||||||++++++...+ +..++-+..+..... ..|.....+..+. .... .....+|++||
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDE 447 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDE 447 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEEC
Confidence 3567899999999999999997654 444444433222211 1111111122221 1111 12347999999
Q ss_pred Ccch
Q psy2637 329 VDSV 332 (502)
Q Consensus 329 Id~L 332 (502)
+..+
T Consensus 448 asMv 451 (744)
T TIGR02768 448 AGMV 451 (744)
T ss_pred cccC
Confidence 9766
No 493
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.021 Score=55.09 Aligned_cols=27 Identities=33% Similarity=0.430 Sum_probs=23.2
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+-|.||+||||||++++++...
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 346778899999999999999999743
No 494
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.026 Score=54.77 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.7
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.+--|-|.||+|||||||.+.||.-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999999754
No 495
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.09 E-value=0.016 Score=59.83 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=22.6
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
+...+|+||+|||||++++.+++.+
T Consensus 133 GQR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 133 GQRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999877
No 496
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.09 E-value=0.0051 Score=56.85 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
++..++|.|++|+|||++|+.++..+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999885
No 497
>KOG0058|consensus
Probab=96.09 E-value=0.025 Score=62.23 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=23.7
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.|+..+-|+||+|.||||+|..+-+-.
T Consensus 492 ~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 566789999999999999999998855
No 498
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.07 E-value=0.037 Score=56.10 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=28.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---------cCceEEeeccc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---------NATFFSISAAS 296 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---------~~~fv~i~~s~ 296 (502)
.+..++|+||||+|||+++-.++... +...+.++..+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 35667899999999999999998763 23666776554
No 499
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.06 E-value=0.027 Score=54.46 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=24.0
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++.+..|+||.|+|||+|++.++.+.
T Consensus 55 ~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 55 NPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred cCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 456789999999999999999998864
No 500
>PLN02165 adenylate isopentenyltransferase
Probab=96.05 E-value=0.0063 Score=61.93 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=29.3
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCceEEeec
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFSISA 294 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~ 294 (502)
++..++|.||+|+|||++|..||..++..++..+.
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs 76 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDK 76 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence 34568999999999999999999999877666543
Done!