Query psy2637
Match_columns 502
No_of_seqs 463 out of 3661
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 21:16:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zan_A Vacuolar protein sortin 100.0 2.9E-44 1E-48 379.8 24.0 370 128-500 7-443 (444)
2 4b4t_J 26S protease regulatory 100.0 8.9E-43 3.1E-47 358.7 23.6 260 219-493 139-404 (405)
3 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.8E-40 9.6E-45 335.2 30.6 280 220-500 4-321 (322)
4 4b4t_H 26S protease regulatory 100.0 4.3E-41 1.5E-45 350.1 23.2 260 220-494 201-467 (467)
5 3d8b_A Fidgetin-like protein 1 100.0 2E-40 6.7E-45 341.1 27.8 297 204-500 60-356 (357)
6 3eie_A Vacuolar protein sortin 100.0 1.8E-40 6E-45 336.6 26.5 282 218-500 8-320 (322)
7 4b4t_I 26S protease regulatory 100.0 1.8E-41 6E-46 349.9 18.2 253 220-487 174-432 (437)
8 4b4t_L 26S protease subunit RP 100.0 1.1E-40 3.7E-45 348.2 22.2 250 221-485 174-429 (437)
9 4b4t_M 26S protease regulatory 100.0 1.6E-40 5.4E-45 346.6 23.2 249 221-484 174-428 (434)
10 3b9p_A CG5977-PA, isoform A; A 100.0 3.7E-40 1.3E-44 329.6 24.7 293 210-502 3-296 (297)
11 3vfd_A Spastin; ATPase, microt 100.0 2.6E-40 9E-45 343.9 23.7 292 211-502 98-389 (389)
12 2qp9_X Vacuolar protein sortin 100.0 3.8E-39 1.3E-43 331.2 28.3 288 212-500 35-353 (355)
13 4b4t_K 26S protease regulatory 100.0 5.9E-40 2E-44 342.1 21.3 252 221-487 165-424 (428)
14 3cf2_A TER ATPase, transitiona 100.0 3.5E-41 1.2E-45 374.5 8.8 275 222-499 471-764 (806)
15 3cf0_A Transitional endoplasmi 100.0 1.8E-36 6.3E-41 304.3 22.3 276 220-498 7-301 (301)
16 3hu3_A Transitional endoplasmi 100.0 4.1E-37 1.4E-41 327.7 5.5 276 223-501 199-484 (489)
17 3cf2_A TER ATPase, transitiona 100.0 1.5E-35 5.3E-40 329.2 17.1 258 222-482 198-463 (806)
18 2x8a_A Nuclear valosin-contain 100.0 6.3E-33 2.2E-37 274.9 20.7 263 222-487 4-273 (274)
19 3h4m_A Proteasome-activating n 100.0 3E-31 1E-35 263.2 24.7 266 221-501 10-283 (285)
20 1lv7_A FTSH; alpha/beta domain 100.0 2.2E-29 7.5E-34 246.4 24.8 245 220-480 4-254 (257)
21 2ce7_A Cell division protein F 100.0 2.7E-29 9.2E-34 265.8 26.7 243 222-480 10-258 (476)
22 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.4E-29 4.8E-34 247.6 21.2 243 223-480 1-251 (262)
23 1ypw_A Transitional endoplasmi 100.0 6.1E-32 2.1E-36 304.3 -4.1 275 221-498 470-763 (806)
24 1ixz_A ATP-dependent metallopr 100.0 4E-27 1.4E-31 229.9 22.7 242 218-475 6-253 (254)
25 1ny5_A Transcriptional regulat 100.0 6.8E-30 2.3E-34 265.2 2.9 298 112-476 53-385 (387)
26 2dhr_A FTSH; AAA+ protein, hex 100.0 1.4E-27 4.8E-32 254.0 19.1 243 223-481 26-274 (499)
27 2r62_A Cell division protease 99.9 1.1E-29 3.9E-34 249.7 0.5 249 221-484 4-259 (268)
28 1iy2_A ATP-dependent metallopr 99.9 7.5E-26 2.6E-30 224.2 24.4 239 221-475 33-277 (278)
29 3dzd_A Transcriptional regulat 99.9 1.6E-28 5.6E-33 253.1 0.3 281 112-467 53-367 (368)
30 1ypw_A Transitional endoplasmi 99.9 5E-25 1.7E-29 248.1 19.7 257 222-481 198-462 (806)
31 3t15_A Ribulose bisphosphate c 99.9 3.3E-23 1.1E-27 206.9 11.9 172 259-437 34-222 (293)
32 3syl_A Protein CBBX; photosynt 99.9 3.5E-22 1.2E-26 199.9 13.2 235 229-473 32-289 (309)
33 3pfi_A Holliday junction ATP-d 99.9 2.7E-20 9.1E-25 188.9 25.2 221 220-479 21-255 (338)
34 1ojl_A Transcriptional regulat 99.9 3.4E-22 1.2E-26 200.6 8.6 214 228-475 2-249 (304)
35 3uk6_A RUVB-like 2; hexameric 99.9 1.3E-20 4.5E-25 193.2 19.1 220 224-478 40-330 (368)
36 1hqc_A RUVB; extended AAA-ATPa 99.9 4.8E-20 1.6E-24 185.5 22.6 219 221-479 5-239 (324)
37 2c9o_A RUVB-like 1; hexameric 99.8 1.1E-19 3.9E-24 192.3 20.4 232 222-479 31-438 (456)
38 1ofh_A ATP-dependent HSL prote 99.8 4.5E-20 1.5E-24 184.1 16.1 247 228-479 15-300 (310)
39 2bjv_A PSP operon transcriptio 99.8 9.3E-21 3.2E-25 185.9 10.6 215 226-473 4-252 (265)
40 3hws_A ATP-dependent CLP prote 99.8 1.1E-19 3.7E-24 186.7 10.9 178 229-406 16-267 (363)
41 3m6a_A ATP-dependent protease 99.8 1.9E-19 6.5E-24 194.4 11.8 232 227-479 80-342 (543)
42 3pxi_A Negative regulator of g 99.8 1E-17 3.5E-22 188.1 24.4 162 228-410 491-677 (758)
43 3pvs_A Replication-associated 99.8 5.1E-18 1.7E-22 178.8 19.6 211 222-480 20-246 (447)
44 1d2n_A N-ethylmaleimide-sensit 99.8 1.9E-18 6.6E-23 170.1 15.3 232 228-480 33-266 (272)
45 2v1u_A Cell division control p 99.8 1E-17 3.5E-22 171.7 20.2 224 226-478 17-276 (387)
46 2chg_A Replication factor C sm 99.8 2.7E-17 9.2E-22 154.7 21.2 204 221-476 10-224 (226)
47 2z4s_A Chromosomal replication 99.8 1.9E-17 6.5E-22 174.3 21.6 222 222-479 99-333 (440)
48 1l8q_A Chromosomal replication 99.8 3E-17 1E-21 165.6 22.3 199 222-445 5-214 (324)
49 3pxg_A Negative regulator of g 99.8 5.5E-19 1.9E-23 187.6 8.3 173 221-430 173-364 (468)
50 3u61_B DNA polymerase accessor 99.8 1.6E-17 5.3E-22 167.5 18.2 189 220-441 18-219 (324)
51 1njg_A DNA polymerase III subu 99.8 2.5E-17 8.7E-22 156.6 18.1 211 221-475 16-248 (250)
52 1g41_A Heat shock protein HSLU 99.7 6E-17 2E-21 169.2 21.1 254 228-490 15-442 (444)
53 1g8p_A Magnesium-chelatase 38 99.7 5E-17 1.7E-21 165.0 19.0 231 222-478 18-322 (350)
54 3bos_A Putative DNA replicatio 99.7 1.2E-16 4.2E-21 152.7 20.2 207 223-476 23-241 (242)
55 4fcw_A Chaperone protein CLPB; 99.7 2.3E-17 7.8E-22 164.9 15.2 205 228-456 17-273 (311)
56 1qvr_A CLPB protein; coiled co 99.7 5.7E-17 2E-21 184.1 20.2 204 228-458 558-816 (854)
57 1sxj_A Activator 1 95 kDa subu 99.7 3.5E-17 1.2E-21 175.8 16.8 206 219-438 30-252 (516)
58 1um8_A ATP-dependent CLP prote 99.7 3.1E-17 1.1E-21 169.1 15.0 239 229-475 22-362 (376)
59 2r44_A Uncharacterized protein 99.7 4.5E-17 1.6E-21 164.7 15.7 213 227-478 26-297 (331)
60 1sxj_D Activator 1 41 kDa subu 99.7 1.4E-16 4.8E-21 161.7 19.4 194 220-444 29-240 (353)
61 2chq_A Replication factor C sm 99.7 3.8E-16 1.3E-20 156.0 21.5 194 219-443 8-208 (319)
62 1in4_A RUVB, holliday junction 99.7 3.7E-15 1.3E-19 151.3 28.5 221 220-479 17-251 (334)
63 1jbk_A CLPB protein; beta barr 99.7 3.1E-17 1.1E-21 150.6 11.8 159 224-404 18-194 (195)
64 2qby_B CDC6 homolog 3, cell di 99.7 2.9E-16 9.9E-21 161.3 20.2 213 228-478 20-270 (384)
65 1sxj_B Activator 1 37 kDa subu 99.7 5.5E-16 1.9E-20 155.1 21.1 186 221-440 14-211 (323)
66 1r6b_X CLPA protein; AAA+, N-t 99.7 5.8E-16 2E-20 173.8 23.1 227 224-479 182-434 (758)
67 1fnn_A CDC6P, cell division co 99.7 1.6E-15 5.5E-20 155.7 24.5 226 226-483 15-279 (389)
68 1iqp_A RFCS; clamp loader, ext 99.7 1.4E-15 4.7E-20 152.5 22.3 193 220-443 17-216 (327)
69 3n70_A Transport activator; si 99.7 2.8E-17 9.5E-22 146.6 8.0 133 229-397 2-144 (145)
70 2qby_A CDC6 homolog 1, cell di 99.7 1E-15 3.5E-20 156.6 20.7 205 225-448 17-254 (386)
71 1r6b_X CLPA protein; AAA+, N-t 99.7 1.8E-16 6.2E-21 177.9 15.9 201 228-447 458-716 (758)
72 1jr3_A DNA polymerase III subu 99.7 9.8E-16 3.4E-20 156.7 19.2 190 221-444 9-226 (373)
73 3pxi_A Negative regulator of g 99.7 3.3E-16 1.1E-20 175.7 14.9 186 221-443 173-382 (758)
74 3co5_A Putative two-component 99.7 2.7E-17 9.2E-22 146.4 3.6 133 229-397 5-142 (143)
75 1qvr_A CLPB protein; coiled co 99.7 9.2E-16 3.1E-20 174.2 16.8 200 222-443 164-389 (854)
76 3te6_A Regulatory protein SIR3 99.7 1E-15 3.4E-20 153.7 15.0 198 230-450 22-290 (318)
77 2p65_A Hypothetical protein PF 99.6 7.1E-16 2.4E-20 141.2 11.9 151 224-396 18-187 (187)
78 1sxj_E Activator 1 40 kDa subu 99.6 2.5E-15 8.4E-20 153.0 17.1 195 218-444 4-242 (354)
79 1sxj_C Activator 1 40 kDa subu 99.6 1.1E-14 3.9E-19 147.8 17.5 185 220-438 17-212 (340)
80 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 2.1E-15 7.3E-20 160.5 10.8 196 229-450 23-270 (500)
81 3f9v_A Minichromosome maintena 99.6 7E-16 2.4E-20 168.1 6.7 235 228-479 295-588 (595)
82 3k1j_A LON protease, ATP-depen 99.5 1.9E-14 6.5E-19 157.4 11.8 230 221-491 34-387 (604)
83 1a5t_A Delta prime, HOLB; zinc 99.4 2E-12 6.8E-17 131.1 16.1 169 233-436 7-203 (334)
84 1w5s_A Origin recognition comp 99.4 9.3E-12 3.2E-16 128.7 19.4 210 226-447 20-274 (412)
85 2gno_A DNA polymerase III, gam 99.3 1.6E-11 5.3E-16 122.9 15.9 163 232-438 1-173 (305)
86 3f8t_A Predicted ATPase involv 99.2 6.1E-11 2.1E-15 123.4 12.0 212 230-479 215-484 (506)
87 4akg_A Glutathione S-transfera 99.1 3.1E-10 1E-14 139.9 13.1 141 261-411 1267-1434(2695)
88 2qen_A Walker-type ATPase; unk 99.1 6.9E-09 2.4E-13 104.2 20.6 194 222-441 6-248 (350)
89 3cmw_A Protein RECA, recombina 99.1 1.6E-10 5.4E-15 137.0 8.9 150 223-375 1015-1218(1706)
90 2fna_A Conserved hypothetical 99.0 2.3E-08 7.7E-13 100.6 21.4 189 222-441 7-252 (357)
91 3ec2_A DNA replication protein 99.0 1.5E-09 5.3E-14 99.3 11.0 99 222-332 4-112 (180)
92 3vlf_B 26S protease regulatory 98.9 1.7E-09 5.9E-14 87.7 7.0 86 396-494 2-88 (88)
93 3aji_B S6C, proteasome (prosom 98.9 1.8E-09 6.2E-14 86.4 6.5 82 396-491 2-83 (83)
94 2w58_A DNAI, primosome compone 98.8 1.2E-08 4E-13 95.0 10.6 99 224-332 21-127 (202)
95 2krk_A 26S protease regulatory 98.8 3.7E-09 1.3E-13 85.3 6.0 78 391-481 7-84 (86)
96 2kjq_A DNAA-related protein; s 98.8 8.1E-09 2.8E-13 92.1 8.2 107 260-394 35-147 (149)
97 3kw6_A 26S protease regulatory 98.8 1.1E-08 3.9E-13 80.8 7.4 75 393-480 1-75 (78)
98 2r2a_A Uncharacterized protein 98.7 1.4E-08 4.9E-13 95.0 6.5 128 262-398 6-156 (199)
99 2dl1_A Spartin; SPG20, MIT, st 98.6 2.2E-07 7.4E-12 77.6 10.0 83 119-203 9-93 (116)
100 3eab_A Spastin; spastin, MIT, 98.6 2.6E-07 8.7E-12 73.5 9.9 81 122-203 6-87 (89)
101 2qgz_A Helicase loader, putati 98.6 6.8E-08 2.3E-12 96.6 8.4 96 225-332 121-226 (308)
102 4akg_A Glutathione S-transfera 98.6 3.1E-07 1.1E-11 113.6 15.0 133 261-405 645-790 (2695)
103 2vhj_A Ntpase P4, P4; non- hyd 98.6 5.1E-08 1.7E-12 97.2 5.9 111 261-375 123-236 (331)
104 1jr3_D DNA polymerase III, del 98.5 1.2E-06 4.1E-11 88.5 16.0 145 261-432 18-179 (343)
105 1tue_A Replication protein E1; 98.5 2.4E-07 8.3E-12 86.4 9.8 110 261-395 58-179 (212)
106 3vkg_A Dynein heavy chain, cyt 98.5 5.7E-07 1.9E-11 112.0 14.1 141 260-410 1303-1471(3245)
107 2dzn_B 26S protease regulatory 98.5 4E-08 1.4E-12 78.4 1.7 80 398-490 1-81 (82)
108 1u0j_A DNA replication protein 98.2 6.4E-06 2.2E-10 80.0 11.9 26 261-286 104-129 (267)
109 1ye8_A Protein THEP1, hypothet 98.2 9.7E-06 3.3E-10 74.2 11.6 26 263-288 2-27 (178)
110 3vkg_A Dynein heavy chain, cyt 98.1 7.9E-06 2.7E-10 102.0 12.7 135 262-404 605-749 (3245)
111 3cmu_A Protein RECA, recombina 98.0 9.1E-06 3.1E-10 97.9 9.7 113 259-374 1425-1562(2050)
112 1z6t_A APAF-1, apoptotic prote 98.0 8.2E-05 2.8E-09 80.4 16.4 179 222-440 118-329 (591)
113 3sfz_A APAF-1, apoptotic pepti 97.7 0.00047 1.6E-08 80.4 16.6 180 222-439 118-328 (1249)
114 1svm_A Large T antigen; AAA+ f 97.7 2.1E-05 7.1E-10 80.6 4.0 105 259-384 167-272 (377)
115 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00052 1.8E-08 64.1 12.4 26 260-285 22-47 (235)
116 1qhx_A CPT, protein (chloramph 97.5 7.6E-05 2.6E-09 67.3 5.1 37 261-297 3-39 (178)
117 2a5y_B CED-4; apoptosis; HET: 97.5 0.00045 1.5E-08 74.2 11.8 173 231-438 131-336 (549)
118 1vma_A Cell division protein F 97.5 0.004 1.4E-07 61.7 17.6 72 260-331 103-197 (306)
119 3hr8_A Protein RECA; alpha and 97.5 0.00035 1.2E-08 70.8 10.0 75 260-334 60-153 (356)
120 3upu_A ATP-dependent DNA helic 97.5 0.00024 8.3E-09 74.5 9.0 53 220-285 16-69 (459)
121 1n0w_A DNA repair protein RAD5 97.4 0.00033 1.1E-08 66.1 8.5 76 260-335 23-134 (243)
122 1xp8_A RECA protein, recombina 97.4 0.00082 2.8E-08 68.4 11.2 75 260-334 73-166 (366)
123 2zr9_A Protein RECA, recombina 97.4 0.00029 1E-08 71.3 7.7 75 260-334 60-153 (349)
124 3trf_A Shikimate kinase, SK; a 97.4 0.0001 3.6E-09 66.9 3.9 33 261-293 5-37 (185)
125 2r6a_A DNAB helicase, replicat 97.3 0.02 7E-07 59.7 21.6 35 259-293 201-239 (454)
126 3to5_A CHEY homolog; alpha(5)b 97.3 1.1E-06 3.9E-11 76.7 -9.4 53 112-171 66-121 (134)
127 2cvh_A DNA repair and recombin 97.3 0.00058 2E-08 63.4 8.4 37 260-296 19-55 (220)
128 2r8r_A Sensor protein; KDPD, P 97.3 0.00062 2.1E-08 64.4 8.4 33 262-294 7-42 (228)
129 2z43_A DNA repair and recombin 97.3 0.00075 2.6E-08 67.5 9.3 75 260-334 106-217 (324)
130 1u94_A RECA protein, recombina 97.3 0.00057 2E-08 69.3 8.4 75 260-334 62-155 (356)
131 3vaa_A Shikimate kinase, SK; s 97.2 0.00017 5.8E-09 66.7 4.0 33 260-292 24-56 (199)
132 3dm5_A SRP54, signal recogniti 97.2 0.0066 2.3E-07 63.1 16.1 73 260-332 99-194 (443)
133 2q6t_A DNAB replication FORK h 97.2 0.032 1.1E-06 58.0 21.6 36 259-294 198-237 (444)
134 1v5w_A DMC1, meiotic recombina 97.2 0.00081 2.8E-08 67.8 9.0 76 260-335 121-234 (343)
135 2orw_A Thymidine kinase; TMTK, 97.2 0.00016 5.6E-09 66.3 3.0 24 262-285 4-27 (184)
136 3kb2_A SPBC2 prophage-derived 97.2 0.00025 8.4E-09 63.2 4.1 31 263-293 3-33 (173)
137 2b8t_A Thymidine kinase; deoxy 97.2 0.0013 4.5E-08 62.2 9.3 73 259-332 10-101 (223)
138 3iij_A Coilin-interacting nucl 97.1 0.00024 8.3E-09 64.2 3.9 32 261-292 11-42 (180)
139 2iut_A DNA translocase FTSK; n 97.1 0.0037 1.3E-07 66.9 13.4 73 322-404 345-419 (574)
140 2iyv_A Shikimate kinase, SK; t 97.1 0.00026 9E-09 64.1 3.9 31 262-292 3-33 (184)
141 1via_A Shikimate kinase; struc 97.1 0.00025 8.4E-09 63.9 3.5 29 263-291 6-34 (175)
142 2ehv_A Hypothetical protein PH 97.1 0.0023 7.7E-08 60.5 10.5 23 260-282 29-51 (251)
143 4a74_A DNA repair and recombin 97.1 0.0014 4.9E-08 61.1 8.8 26 260-285 24-49 (231)
144 1zuh_A Shikimate kinase; alpha 97.1 0.00028 9.7E-09 63.0 3.7 32 261-292 7-38 (168)
145 2dr3_A UPF0273 protein PH0284; 97.1 0.0039 1.3E-07 58.7 11.9 34 260-293 22-58 (247)
146 1y63_A LMAJ004144AAA protein; 97.1 0.00031 1.1E-08 64.0 3.7 32 261-292 10-42 (184)
147 2rhm_A Putative kinase; P-loop 97.0 0.00032 1.1E-08 63.8 3.7 31 261-291 5-35 (193)
148 3cmu_A Protein RECA, recombina 97.0 0.0012 4.1E-08 79.8 9.3 112 259-372 730-866 (2050)
149 1kag_A SKI, shikimate kinase I 97.0 0.00041 1.4E-08 62.1 4.2 30 262-291 5-34 (173)
150 3e1s_A Exodeoxyribonuclease V, 97.0 0.00072 2.5E-08 73.0 6.8 25 261-285 204-228 (574)
151 2p5t_B PEZT; postsegregational 97.0 0.0024 8.2E-08 61.3 9.7 38 260-297 31-68 (253)
152 2cdn_A Adenylate kinase; phosp 97.0 0.00046 1.6E-08 63.6 4.2 32 261-292 20-51 (201)
153 2ze6_A Isopentenyl transferase 97.0 0.00043 1.5E-08 66.7 4.1 32 263-294 3-34 (253)
154 3lda_A DNA repair protein RAD5 97.0 0.0019 6.5E-08 66.5 8.9 77 259-335 176-288 (400)
155 1gvn_B Zeta; postsegregational 96.9 0.0013 4.5E-08 64.6 7.3 37 261-297 33-69 (287)
156 2c95_A Adenylate kinase 1; tra 96.9 0.00045 1.5E-08 63.0 3.6 32 261-292 9-40 (196)
157 3lw7_A Adenylate kinase relate 96.9 0.00043 1.5E-08 61.5 3.4 29 263-292 3-31 (179)
158 1e6c_A Shikimate kinase; phosp 96.9 0.00049 1.7E-08 61.5 3.7 30 262-291 3-32 (173)
159 1tev_A UMP-CMP kinase; ploop, 96.9 0.00044 1.5E-08 62.8 3.4 31 261-291 3-33 (196)
160 1zp6_A Hypothetical protein AT 96.9 0.00048 1.7E-08 62.6 3.6 36 261-296 9-44 (191)
161 3t61_A Gluconokinase; PSI-biol 96.9 0.00071 2.4E-08 62.3 4.7 31 261-291 18-48 (202)
162 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0019 6.5E-08 62.3 7.8 38 261-298 4-44 (260)
163 1aky_A Adenylate kinase; ATP:A 96.9 0.00054 1.8E-08 64.2 3.8 32 261-292 4-35 (220)
164 3io5_A Recombination and repai 96.9 0.0024 8.2E-08 63.4 8.5 72 263-334 30-125 (333)
165 1kht_A Adenylate kinase; phosp 96.9 0.00048 1.6E-08 62.4 3.2 25 262-286 4-28 (192)
166 1pzn_A RAD51, DNA repair and r 96.9 0.0031 1E-07 63.7 9.4 26 260-285 130-155 (349)
167 3kl4_A SRP54, signal recogniti 96.8 0.017 5.8E-07 59.9 15.0 73 260-332 96-191 (433)
168 3dl0_A Adenylate kinase; phosp 96.8 0.00063 2.2E-08 63.4 3.8 30 263-292 2-31 (216)
169 2ius_A DNA translocase FTSK; n 96.8 0.012 3.9E-07 62.4 13.9 73 323-405 300-374 (512)
170 3cm0_A Adenylate kinase; ATP-b 96.8 0.00044 1.5E-08 62.6 2.7 30 262-291 5-34 (186)
171 2vli_A Antibiotic resistance p 96.8 0.00053 1.8E-08 61.8 3.1 30 261-290 5-34 (183)
172 3cmw_A Protein RECA, recombina 96.8 0.0028 9.6E-08 75.7 10.1 76 259-334 730-824 (1706)
173 2i1q_A DNA repair and recombin 96.8 0.0025 8.5E-08 63.4 8.2 25 260-284 97-121 (322)
174 2pt5_A Shikimate kinase, SK; a 96.8 0.00065 2.2E-08 60.4 3.6 30 263-292 2-31 (168)
175 2bwj_A Adenylate kinase 5; pho 96.8 0.00061 2.1E-08 62.3 3.4 32 261-292 12-43 (199)
176 3fb4_A Adenylate kinase; psych 96.8 0.00068 2.3E-08 63.1 3.6 30 263-292 2-31 (216)
177 1zd8_A GTP:AMP phosphotransfer 96.8 0.0007 2.4E-08 63.7 3.7 32 261-292 7-38 (227)
178 1zak_A Adenylate kinase; ATP:A 96.7 0.00063 2.2E-08 63.8 3.1 31 261-291 5-35 (222)
179 3tlx_A Adenylate kinase 2; str 96.7 0.0013 4.4E-08 62.9 5.3 33 260-292 28-60 (243)
180 1qf9_A UMP/CMP kinase, protein 96.7 0.00069 2.4E-08 61.4 3.2 31 262-292 7-37 (194)
181 3jvv_A Twitching mobility prot 96.7 0.0013 4.6E-08 66.6 5.7 70 261-330 123-206 (356)
182 1ly1_A Polynucleotide kinase; 96.7 0.00067 2.3E-08 60.8 3.1 28 262-289 3-31 (181)
183 1ukz_A Uridylate kinase; trans 96.7 0.00085 2.9E-08 61.8 3.9 32 261-292 15-46 (203)
184 2eyu_A Twitching motility prot 96.7 0.00095 3.2E-08 64.7 4.3 71 260-330 24-108 (261)
185 1knq_A Gluconate kinase; ALFA/ 96.7 0.00089 3E-08 60.1 3.9 31 261-291 8-38 (175)
186 1vt4_I APAF-1 related killer D 96.7 0.013 4.3E-07 66.9 13.9 44 230-284 130-173 (1221)
187 1ak2_A Adenylate kinase isoenz 96.7 0.00089 3E-08 63.4 3.9 32 261-292 16-47 (233)
188 3luf_A Two-component system re 96.6 0.0011 3.6E-08 64.0 3.9 50 112-170 57-107 (259)
189 3be4_A Adenylate kinase; malar 96.6 0.00088 3E-08 62.7 3.3 31 262-292 6-36 (217)
190 4eun_A Thermoresistant glucoki 96.6 0.0013 4.4E-08 60.6 4.3 31 260-290 28-58 (200)
191 2pez_A Bifunctional 3'-phospho 96.6 0.0015 5E-08 59.0 4.4 36 261-296 5-43 (179)
192 2bbw_A Adenylate kinase 4, AK4 96.6 0.0015 5E-08 62.3 4.4 32 259-290 25-56 (246)
193 3bgw_A DNAB-like replicative h 96.6 0.12 4.2E-06 53.7 19.3 35 259-293 195-232 (444)
194 3crm_A TRNA delta(2)-isopenten 96.6 0.0013 4.4E-08 65.7 4.0 33 262-294 6-38 (323)
195 2fz4_A DNA repair protein RAD2 96.6 0.0043 1.5E-07 59.0 7.5 33 262-294 109-141 (237)
196 3umf_A Adenylate kinase; rossm 96.5 0.0013 4.6E-08 61.8 3.8 37 260-298 28-64 (217)
197 1e4v_A Adenylate kinase; trans 96.5 0.0012 4.1E-08 61.5 3.4 30 263-292 2-31 (214)
198 2px0_A Flagellar biosynthesis 96.5 0.017 5.9E-07 56.8 11.9 36 259-294 103-142 (296)
199 2pbr_A DTMP kinase, thymidylat 96.5 0.0019 6.5E-08 58.5 4.4 31 263-293 2-35 (195)
200 3sr0_A Adenylate kinase; phosp 96.5 0.0016 5.4E-08 60.8 3.9 34 263-298 2-35 (206)
201 1g5t_A COB(I)alamin adenosyltr 96.5 0.012 4.2E-07 54.2 9.8 25 261-285 28-52 (196)
202 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0018 6.2E-08 65.3 4.5 30 262-291 25-54 (359)
203 1nlf_A Regulatory protein REPA 96.5 0.0069 2.4E-07 58.8 8.6 26 260-285 29-54 (279)
204 2jaq_A Deoxyguanosine kinase; 96.5 0.0016 5.5E-08 59.5 3.7 29 263-291 2-30 (205)
205 2v54_A DTMP kinase, thymidylat 96.4 0.0021 7.1E-08 58.9 4.4 33 261-293 4-37 (204)
206 1nks_A Adenylate kinase; therm 96.4 0.0013 4.3E-08 59.6 2.8 24 263-286 3-26 (194)
207 1cke_A CK, MSSA, protein (cyti 96.4 0.0019 6.6E-08 60.3 4.1 29 262-290 6-34 (227)
208 4gp7_A Metallophosphoesterase; 96.4 0.0029 1E-07 56.8 5.1 20 261-280 9-28 (171)
209 3uie_A Adenylyl-sulfate kinase 96.4 0.0024 8.3E-08 58.8 4.5 26 260-285 24-49 (200)
210 2wwf_A Thymidilate kinase, put 96.4 0.0013 4.6E-08 60.7 2.6 31 261-291 10-40 (212)
211 3a8t_A Adenylate isopentenyltr 96.4 0.0016 5.5E-08 65.3 3.3 34 262-295 41-74 (339)
212 3eq2_A Probable two-component 96.4 0.00016 5.5E-09 74.1 -4.1 51 112-169 58-109 (394)
213 2if2_A Dephospho-COA kinase; a 96.4 0.0017 5.7E-08 59.8 3.2 29 263-292 3-31 (204)
214 2zts_A Putative uncharacterize 96.4 0.0081 2.8E-07 56.5 8.1 36 259-294 28-67 (251)
215 2xb4_A Adenylate kinase; ATP-b 96.3 0.0021 7.3E-08 60.4 3.9 29 263-291 2-30 (223)
216 1nn5_A Similar to deoxythymidy 96.3 0.0016 5.5E-08 60.2 3.0 30 261-290 9-38 (215)
217 2z0h_A DTMP kinase, thymidylat 96.3 0.0027 9.1E-08 57.8 4.3 29 264-292 3-34 (197)
218 3nwj_A ATSK2; P loop, shikimat 96.3 0.0025 8.5E-08 61.3 4.1 32 261-292 48-79 (250)
219 3ake_A Cytidylate kinase; CMP 96.3 0.0026 8.8E-08 58.4 3.9 30 263-292 4-33 (208)
220 2ewv_A Twitching motility prot 96.3 0.002 6.8E-08 65.7 3.3 71 260-330 135-219 (372)
221 2grj_A Dephospho-COA kinase; T 96.2 0.0023 7.8E-08 59.0 3.4 31 262-292 13-43 (192)
222 1uf9_A TT1252 protein; P-loop, 96.2 0.0024 8.3E-08 58.3 3.6 30 261-291 8-37 (203)
223 3foz_A TRNA delta(2)-isopenten 96.2 0.0029 1E-07 62.6 4.3 35 261-295 10-44 (316)
224 2plr_A DTMP kinase, probable t 96.2 0.0025 8.7E-08 58.5 3.5 28 261-288 4-31 (213)
225 1jjv_A Dephospho-COA kinase; P 96.2 0.0023 7.9E-08 59.0 3.1 28 263-291 4-31 (206)
226 2qor_A Guanylate kinase; phosp 96.2 0.0032 1.1E-07 58.2 4.0 27 260-286 11-37 (204)
227 3r20_A Cytidylate kinase; stru 96.1 0.0034 1.2E-07 59.7 4.1 31 261-291 9-39 (233)
228 3b6e_A Interferon-induced heli 96.1 0.025 8.6E-07 51.7 10.1 24 262-285 49-72 (216)
229 2w2u_A Hypothetical P60 katani 96.1 0.021 7E-07 45.1 8.0 43 128-172 15-57 (83)
230 1uj2_A Uridine-cytidine kinase 96.1 0.0037 1.3E-07 59.8 4.4 29 261-289 22-50 (252)
231 4e22_A Cytidylate kinase; P-lo 96.1 0.004 1.4E-07 59.8 4.5 31 260-290 26-56 (252)
232 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0039 1.3E-07 62.4 4.4 71 261-331 171-251 (330)
233 3exa_A TRNA delta(2)-isopenten 96.1 0.0038 1.3E-07 61.9 4.1 34 262-295 4-37 (322)
234 1ex7_A Guanylate kinase; subst 96.1 0.0042 1.4E-07 57.0 4.1 28 262-289 2-29 (186)
235 1w36_D RECD, exodeoxyribonucle 96.0 0.015 5E-07 63.2 9.1 25 261-285 164-188 (608)
236 2yvu_A Probable adenylyl-sulfa 96.0 0.0049 1.7E-07 55.8 4.5 35 260-294 12-49 (186)
237 1kgd_A CASK, peripheral plasma 96.0 0.0044 1.5E-07 56.1 3.8 26 261-286 5-30 (180)
238 3rqi_A Response regulator prot 95.9 5.9E-05 2E-09 68.6 -9.0 53 112-171 60-113 (184)
239 3d3q_A TRNA delta(2)-isopenten 95.9 0.0042 1.4E-07 62.3 3.8 33 262-294 8-40 (340)
240 1vht_A Dephospho-COA kinase; s 95.9 0.0046 1.6E-07 57.5 3.7 30 262-292 5-34 (218)
241 2qmh_A HPR kinase/phosphorylas 95.9 0.0035 1.2E-07 58.0 2.8 35 260-295 33-67 (205)
242 2h92_A Cytidylate kinase; ross 95.9 0.0049 1.7E-07 57.3 3.9 31 262-292 4-34 (219)
243 2v6y_A AAA family ATPase, P60 95.9 0.01 3.5E-07 46.9 5.1 43 128-172 7-49 (83)
244 2qt1_A Nicotinamide riboside k 95.9 0.0038 1.3E-07 57.6 3.0 31 261-291 21-52 (207)
245 3tau_A Guanylate kinase, GMP k 95.9 0.0045 1.5E-07 57.4 3.5 27 260-286 7-33 (208)
246 1zu4_A FTSY; GTPase, signal re 95.9 0.51 1.7E-05 46.7 18.7 36 259-294 103-141 (320)
247 3bh0_A DNAB-like replicative h 95.8 0.024 8.3E-07 56.1 9.0 35 259-293 66-103 (315)
248 2j41_A Guanylate kinase; GMP, 95.8 0.0047 1.6E-07 56.6 3.5 25 261-285 6-30 (207)
249 1q3t_A Cytidylate kinase; nucl 95.8 0.0063 2.2E-07 57.5 4.2 32 260-291 15-46 (236)
250 3c8u_A Fructokinase; YP_612366 95.8 0.0084 2.9E-07 55.5 5.0 27 260-286 21-47 (208)
251 3e70_C DPA, signal recognition 95.8 0.08 2.7E-06 52.8 12.4 26 260-285 128-153 (328)
252 1m7g_A Adenylylsulfate kinase; 95.7 0.0063 2.2E-07 56.4 4.0 37 261-297 25-65 (211)
253 3tr0_A Guanylate kinase, GMP k 95.7 0.0064 2.2E-07 55.6 4.0 26 261-286 7-32 (205)
254 1ltq_A Polynucleotide kinase; 95.7 0.0045 1.5E-07 60.6 2.9 29 262-290 3-32 (301)
255 2bdt_A BH3686; alpha-beta prot 95.7 0.0073 2.5E-07 54.7 4.1 24 263-286 4-27 (189)
256 1p9r_A General secretion pathw 95.7 0.028 9.5E-07 58.1 9.0 69 261-330 167-246 (418)
257 3c3w_A Two component transcrip 95.7 0.00053 1.8E-08 64.3 -3.7 53 112-171 56-109 (225)
258 3eph_A TRNA isopentenyltransfe 95.7 0.0058 2E-07 62.6 3.7 32 262-293 3-34 (409)
259 1rz3_A Hypothetical protein rb 95.6 0.023 8E-07 52.1 7.4 32 261-292 22-56 (201)
260 3zvl_A Bifunctional polynucleo 95.6 0.0058 2E-07 63.2 3.4 31 261-291 258-288 (416)
261 2f6r_A COA synthase, bifunctio 95.6 0.0059 2E-07 59.6 3.3 30 261-291 75-104 (281)
262 1wfd_A Hypothetical protein 15 95.6 0.027 9.2E-07 45.4 6.6 42 128-171 11-52 (93)
263 1j8m_F SRP54, signal recogniti 95.6 0.091 3.1E-06 51.6 11.8 72 261-332 98-192 (297)
264 3fdi_A Uncharacterized protein 95.6 0.008 2.7E-07 55.7 3.9 30 262-291 7-36 (201)
265 3a00_A Guanylate kinase, GMP k 95.5 0.0077 2.6E-07 54.7 3.7 25 262-286 2-26 (186)
266 2jk1_A HUPR, hydrogenase trans 95.5 0.00027 9.2E-09 60.5 -5.9 53 112-171 53-107 (139)
267 4b3f_X DNA-binding protein smu 95.5 0.029 9.8E-07 61.3 8.8 39 233-285 191-229 (646)
268 1rj9_A FTSY, signal recognitio 95.5 0.032 1.1E-06 55.1 8.3 26 260-285 101-126 (304)
269 3asz_A Uridine kinase; cytidin 95.5 0.0077 2.6E-07 55.6 3.5 26 261-286 6-31 (211)
270 2r25_B Osmosensing histidine p 95.5 0.00013 4.3E-09 62.4 -8.2 53 112-171 61-115 (133)
271 2oap_1 GSPE-2, type II secreti 95.4 0.0092 3.2E-07 63.4 4.3 70 261-330 260-343 (511)
272 1lvg_A Guanylate kinase, GMP k 95.4 0.0079 2.7E-07 55.3 3.4 25 261-285 4-28 (198)
273 1ls1_A Signal recognition part 95.4 0.15 5.1E-06 49.9 12.7 73 260-332 97-192 (295)
274 1q57_A DNA primase/helicase; d 95.4 0.066 2.3E-06 56.5 10.8 36 259-294 240-279 (503)
275 3b9q_A Chloroplast SRP recepto 95.4 0.032 1.1E-06 55.1 7.8 26 260-285 99-124 (302)
276 2xxa_A Signal recognition part 95.4 0.11 3.9E-06 53.7 12.3 73 260-332 99-195 (433)
277 2cpt_A SKD1 protein, vacuolar 95.4 0.032 1.1E-06 47.0 6.6 41 129-171 15-55 (117)
278 3ney_A 55 kDa erythrocyte memb 95.3 0.01 3.5E-07 54.8 3.8 27 260-286 18-44 (197)
279 4a5x_A MITD1, MIT domain-conta 95.3 0.039 1.3E-06 43.8 6.6 41 129-171 13-53 (86)
280 3gl9_A Response regulator; bet 95.3 0.00016 5.5E-09 60.7 -8.0 53 112-171 55-110 (122)
281 2ffh_A Protein (FFH); SRP54, s 95.2 0.17 5.7E-06 52.3 13.0 35 260-294 97-134 (425)
282 3crn_A Response regulator rece 95.2 0.00021 7.3E-09 60.7 -7.5 53 112-171 56-109 (132)
283 2j37_W Signal recognition part 95.2 0.11 3.7E-06 54.9 11.6 35 260-294 100-137 (504)
284 2v6x_A Vacuolar protein sortin 95.2 0.041 1.4E-06 43.5 6.4 41 129-171 10-50 (85)
285 3h1g_A Chemotaxis protein CHEY 95.1 0.00023 7.8E-09 60.2 -7.6 53 112-171 60-115 (129)
286 3cwo_X Beta/alpha-barrel prote 95.1 4.3E-05 1.5E-09 71.8 -13.5 50 112-168 34-84 (237)
287 3t6k_A Response regulator rece 95.1 0.00024 8.4E-09 60.8 -7.6 53 112-171 57-112 (136)
288 3luf_A Two-component system re 95.1 0.00018 6E-09 69.6 -9.5 53 112-171 178-233 (259)
289 2yhs_A FTSY, cell division pro 95.1 0.2 6.9E-06 52.6 13.1 26 260-285 292-317 (503)
290 2v3c_C SRP54, signal recogniti 95.0 0.078 2.7E-06 55.0 9.8 34 261-294 99-135 (432)
291 1z6g_A Guanylate kinase; struc 95.0 0.015 5E-07 54.4 3.9 26 260-285 22-47 (218)
292 3thx_B DNA mismatch repair pro 95.0 0.064 2.2E-06 60.7 9.7 23 261-283 673-695 (918)
293 1dbw_A Transcriptional regulat 95.0 0.00013 4.6E-09 61.3 -9.4 53 112-171 56-109 (126)
294 1w25_A Stalked-cell differenti 95.0 0.00049 1.7E-08 71.8 -7.2 54 112-172 54-110 (459)
295 1s96_A Guanylate kinase, GMP k 94.9 0.016 5.5E-07 54.4 3.8 27 260-286 15-41 (219)
296 1tf7_A KAIC; homohexamer, hexa 94.9 0.12 4.3E-06 54.7 11.2 22 260-281 38-59 (525)
297 3cfy_A Putative LUXO repressor 94.9 0.00017 5.7E-09 62.0 -9.3 53 112-171 57-110 (137)
298 2axn_A 6-phosphofructo-2-kinas 94.9 0.051 1.7E-06 57.8 8.1 37 261-297 35-74 (520)
299 1znw_A Guanylate kinase, GMP k 94.9 0.017 5.7E-07 53.4 3.8 27 260-286 19-45 (207)
300 3kyj_B CHEY6 protein, putative 94.9 0.00048 1.7E-08 59.3 -6.4 55 112-172 69-124 (145)
301 2og2_A Putative signal recogni 94.9 0.054 1.9E-06 54.7 7.8 26 260-285 156-181 (359)
302 1w4r_A Thymidine kinase; type 94.8 0.025 8.5E-07 52.1 4.8 33 261-293 20-55 (195)
303 3kcn_A Adenylate cyclase homol 94.8 0.00039 1.3E-08 60.5 -7.2 53 112-171 57-111 (151)
304 1gtv_A TMK, thymidylate kinase 94.8 0.0078 2.7E-07 55.4 1.3 24 263-286 2-25 (214)
305 2lpm_A Two-component response 94.8 0.0001 3.4E-09 63.2 -10.8 48 112-171 62-110 (123)
306 1x6v_B Bifunctional 3'-phospho 94.8 0.02 6.9E-07 62.0 4.7 38 260-297 51-91 (630)
307 3b2n_A Uncharacterized protein 94.8 0.00034 1.2E-08 59.5 -7.5 53 112-171 58-111 (133)
308 1htw_A HI0065; nucleotide-bind 94.8 0.018 6.3E-07 51.1 3.6 26 260-285 32-57 (158)
309 1tmy_A CHEY protein, TMY; chem 94.7 0.00038 1.3E-08 57.7 -7.4 53 112-171 56-109 (120)
310 1sky_E F1-ATPase, F1-ATP synth 94.6 0.13 4.4E-06 53.7 10.1 25 261-285 151-175 (473)
311 1srr_A SPO0F, sporulation resp 94.6 0.0005 1.7E-08 57.4 -6.8 53 112-171 56-109 (124)
312 3hv2_A Response regulator/HD d 94.6 0.0003 1E-08 61.4 -8.4 53 112-171 67-121 (153)
313 1c9k_A COBU, adenosylcobinamid 94.6 0.018 6.1E-07 52.4 3.2 32 264-296 2-33 (180)
314 3gmt_A Adenylate kinase; ssgci 94.6 0.019 6.4E-07 54.4 3.5 31 262-292 9-39 (230)
315 2jeo_A Uridine-cytidine kinase 94.6 0.017 6E-07 54.8 3.3 28 261-288 25-52 (245)
316 3hdt_A Putative kinase; struct 94.6 0.019 6.5E-07 54.1 3.5 30 262-291 15-44 (223)
317 3thx_A DNA mismatch repair pro 94.6 0.11 3.8E-06 58.9 10.3 22 262-283 663-684 (934)
318 3cu5_A Two component transcrip 94.6 0.00017 5.9E-09 62.2 -10.1 53 112-171 58-111 (141)
319 4eaq_A DTMP kinase, thymidylat 94.5 0.022 7.4E-07 53.8 3.6 26 261-286 26-51 (229)
320 1tf7_A KAIC; homohexamer, hexa 94.5 0.072 2.4E-06 56.6 8.0 75 259-333 279-384 (525)
321 3jte_A Response regulator rece 94.4 0.00037 1.3E-08 59.8 -8.2 53 112-171 58-111 (143)
322 1qkk_A DCTD, C4-dicarboxylate 94.4 0.00071 2.4E-08 59.0 -6.5 53 112-171 56-109 (155)
323 3lnc_A Guanylate kinase, GMP k 94.4 0.015 5E-07 54.7 2.3 26 260-285 26-52 (231)
324 1odf_A YGR205W, hypothetical 3 94.4 0.044 1.5E-06 53.7 5.7 27 260-286 30-56 (290)
325 1a7j_A Phosphoribulokinase; tr 94.4 0.018 6.3E-07 56.4 2.9 35 262-296 6-43 (290)
326 2v9p_A Replication protein E1; 94.3 0.024 8.2E-07 56.0 3.7 29 259-287 124-152 (305)
327 3tqf_A HPR(Ser) kinase; transf 94.3 0.022 7.4E-07 51.5 3.0 26 259-284 14-39 (181)
328 4dad_A Putative pilus assembly 94.3 0.00019 6.4E-09 62.0 -10.4 53 112-171 76-129 (146)
329 3p32_A Probable GTPase RV1496/ 94.3 0.19 6.4E-06 50.5 10.2 25 261-285 79-103 (355)
330 2i3b_A HCR-ntpase, human cance 94.3 0.026 8.9E-07 51.7 3.5 24 262-285 2-25 (189)
331 2pl1_A Transcriptional regulat 94.2 0.00027 9.1E-09 58.6 -9.2 53 112-171 53-106 (121)
332 1yio_A Response regulatory pro 94.2 0.001 3.4E-08 61.2 -6.3 53 112-171 57-110 (208)
333 3snk_A Response regulator CHEY 94.2 0.00031 1E-08 59.8 -9.2 53 112-171 68-121 (135)
334 1i3c_A Response regulator RCP1 94.2 0.0003 1E-08 61.1 -9.4 53 112-171 70-125 (149)
335 1xx6_A Thymidine kinase; NESG, 94.2 0.032 1.1E-06 51.2 3.9 25 261-285 8-32 (191)
336 2ayx_A Sensor kinase protein R 94.2 0.00062 2.1E-08 65.4 -8.1 53 112-171 182-235 (254)
337 3bre_A Probable two-component 94.1 0.0014 4.9E-08 65.7 -5.9 54 112-172 72-128 (358)
338 1bif_A 6-phosphofructo-2-kinas 94.1 0.1 3.6E-06 54.5 8.2 27 261-287 39-65 (469)
339 1m8p_A Sulfate adenylyltransfe 94.1 0.032 1.1E-06 60.0 4.3 37 260-296 395-435 (573)
340 1dz3_A Stage 0 sporulation pro 94.0 0.00041 1.4E-08 58.5 -8.7 53 112-171 57-111 (130)
341 3heb_A Response regulator rece 94.0 0.00045 1.6E-08 60.0 -8.6 53 112-171 68-123 (152)
342 1qo0_D AMIR; binding protein, 94.0 0.0015 5E-08 59.6 -5.6 53 112-172 61-114 (196)
343 3r0j_A Possible two component 94.0 0.0004 1.4E-08 66.3 -9.8 53 112-171 76-129 (250)
344 3f6p_A Transcriptional regulat 93.9 0.00042 1.4E-08 57.8 -8.7 52 112-171 55-107 (120)
345 3tif_A Uncharacterized ABC tra 93.9 0.028 9.7E-07 53.3 3.0 27 259-285 29-55 (235)
346 1cr0_A DNA primase/helicase; R 93.9 0.032 1.1E-06 54.4 3.6 26 260-285 34-59 (296)
347 3aez_A Pantothenate kinase; tr 93.9 0.032 1.1E-06 55.3 3.5 27 260-286 89-115 (312)
348 2xau_A PRE-mRNA-splicing facto 93.8 0.12 4.2E-06 57.5 8.4 24 261-284 109-132 (773)
349 3hdg_A Uncharacterized protein 93.8 0.00054 1.8E-08 58.3 -8.5 53 112-171 60-113 (137)
350 3klo_A Transcriptional regulat 93.7 0.00023 7.9E-09 66.7 -11.9 53 112-171 63-117 (225)
351 2gk6_A Regulator of nonsense t 93.7 0.056 1.9E-06 58.8 5.4 24 262-285 196-219 (624)
352 2cbz_A Multidrug resistance-as 93.7 0.032 1.1E-06 52.9 3.0 27 259-285 29-55 (237)
353 1sq5_A Pantothenate kinase; P- 93.7 0.038 1.3E-06 54.5 3.7 26 261-286 80-105 (308)
354 2pcj_A ABC transporter, lipopr 93.6 0.03 1E-06 52.7 2.7 26 260-285 29-54 (224)
355 3m6m_D Sensory/regulatory prot 93.6 0.0014 4.8E-08 56.5 -6.1 53 112-171 67-124 (143)
356 2qm8_A GTPase/ATPase; G protei 93.6 0.17 5.6E-06 50.6 8.3 25 261-285 55-79 (337)
357 3tbk_A RIG-I helicase domain; 93.6 0.48 1.6E-05 49.6 12.4 23 262-284 20-42 (555)
358 3dkp_A Probable ATP-dependent 93.6 0.37 1.3E-05 45.0 10.4 17 262-278 67-83 (245)
359 3kto_A Response regulator rece 93.6 0.00077 2.6E-08 57.4 -7.8 53 112-171 59-114 (136)
360 1zgz_A Torcad operon transcrip 93.6 0.00046 1.6E-08 57.3 -9.1 52 112-171 55-107 (122)
361 3kta_A Chromosome segregation 93.5 0.047 1.6E-06 48.8 3.7 25 262-286 27-51 (182)
362 1a04_A Nitrate/nitrite respons 93.4 0.00057 1.9E-08 63.3 -9.6 53 112-171 60-113 (215)
363 2ocp_A DGK, deoxyguanosine kin 93.4 0.043 1.5E-06 51.8 3.4 26 261-286 2-27 (241)
364 2a9o_A Response regulator; ess 93.3 0.00059 2E-08 56.3 -8.7 52 112-171 54-106 (120)
365 3mm4_A Histidine kinase homolo 93.3 0.0006 2.1E-08 63.2 -9.6 51 112-169 128-184 (206)
366 1sgw_A Putative ABC transporte 93.3 0.039 1.3E-06 51.5 2.9 26 260-285 34-59 (214)
367 1xjc_A MOBB protein homolog; s 93.3 0.05 1.7E-06 48.9 3.5 24 262-285 5-28 (169)
368 2fwr_A DNA repair protein RAD2 93.3 0.15 5E-06 53.0 7.6 34 262-295 109-142 (472)
369 3tqc_A Pantothenate kinase; bi 93.3 0.048 1.7E-06 54.2 3.7 26 261-286 92-117 (321)
370 1b0u_A Histidine permease; ABC 93.3 0.04 1.4E-06 53.1 3.0 27 259-285 30-56 (262)
371 1mv5_A LMRA, multidrug resista 93.2 0.038 1.3E-06 52.5 2.8 27 259-285 26-52 (243)
372 1p6q_A CHEY2; chemotaxis, sign 93.2 0.00053 1.8E-08 57.5 -9.3 53 112-171 60-115 (129)
373 1p5z_B DCK, deoxycytidine kina 93.2 0.023 7.9E-07 54.5 1.2 27 260-286 23-49 (263)
374 1mb3_A Cell division response 93.2 0.00065 2.2E-08 56.5 -8.7 53 112-171 54-109 (124)
375 2d2e_A SUFC protein; ABC-ATPas 93.2 0.048 1.6E-06 52.1 3.4 25 260-284 28-52 (250)
376 2zu0_C Probable ATP-dependent 93.2 0.05 1.7E-06 52.6 3.5 26 259-284 44-69 (267)
377 1xhf_A DYE resistance, aerobic 93.2 0.00063 2.2E-08 56.6 -8.9 52 112-171 56-108 (123)
378 2onk_A Molybdate/tungstate ABC 93.1 0.05 1.7E-06 51.8 3.4 24 262-285 25-48 (240)
379 3b85_A Phosphate starvation-in 93.1 0.037 1.3E-06 51.4 2.4 24 261-284 22-45 (208)
380 2ghi_A Transport protein; mult 93.1 0.044 1.5E-06 52.8 3.0 27 259-285 44-70 (260)
381 2ged_A SR-beta, signal recogni 93.1 0.095 3.2E-06 46.9 5.2 26 260-285 47-72 (193)
382 1g6h_A High-affinity branched- 93.1 0.042 1.4E-06 52.8 2.9 26 260-285 32-57 (257)
383 3f6c_A Positive transcription 93.1 0.00086 3E-08 56.6 -8.2 53 112-171 55-108 (134)
384 1np6_A Molybdopterin-guanine d 93.1 0.051 1.7E-06 49.0 3.2 24 262-285 7-30 (174)
385 2ff7_A Alpha-hemolysin translo 93.1 0.044 1.5E-06 52.4 2.9 26 260-285 34-59 (247)
386 4i1u_A Dephospho-COA kinase; s 93.1 0.053 1.8E-06 50.5 3.4 31 262-293 10-40 (210)
387 2rjn_A Response regulator rece 93.1 0.00066 2.3E-08 59.1 -9.2 53 112-171 60-114 (154)
388 3oiy_A Reverse gyrase helicase 93.1 0.15 5.2E-06 51.8 7.2 22 262-283 37-58 (414)
389 2pze_A Cystic fibrosis transme 93.0 0.044 1.5E-06 51.6 2.9 26 260-285 33-58 (229)
390 2gza_A Type IV secretion syste 93.0 0.047 1.6E-06 55.2 3.2 26 260-285 174-199 (361)
391 2ixe_A Antigen peptide transpo 93.0 0.047 1.6E-06 52.9 3.0 27 259-285 43-69 (271)
392 3gfo_A Cobalt import ATP-bindi 93.0 0.045 1.5E-06 53.2 2.9 26 260-285 33-58 (275)
393 1ji0_A ABC transporter; ATP bi 93.0 0.046 1.6E-06 51.9 2.9 26 260-285 31-56 (240)
394 2olj_A Amino acid ABC transpor 93.0 0.047 1.6E-06 52.7 3.0 27 259-285 48-74 (263)
395 1jbe_A Chemotaxis protein CHEY 93.0 0.00059 2E-08 57.2 -9.4 54 111-171 57-113 (128)
396 3eod_A Protein HNR; response r 92.9 0.00044 1.5E-08 58.2 -10.3 52 112-170 60-113 (130)
397 4g1u_C Hemin import ATP-bindin 92.9 0.047 1.6E-06 52.8 2.9 26 260-285 36-61 (266)
398 1vpl_A ABC transporter, ATP-bi 92.9 0.05 1.7E-06 52.3 3.0 27 259-285 39-65 (256)
399 2qi9_C Vitamin B12 import ATP- 92.9 0.048 1.6E-06 52.2 2.9 26 260-285 25-50 (249)
400 2yz2_A Putative ABC transporte 92.9 0.05 1.7E-06 52.5 3.0 27 259-285 31-57 (266)
401 2v6i_A RNA helicase; membrane, 92.8 0.21 7.1E-06 51.6 7.8 22 261-282 2-24 (431)
402 4edh_A DTMP kinase, thymidylat 92.8 0.062 2.1E-06 50.1 3.4 26 261-286 6-31 (213)
403 3fvq_A Fe(3+) IONS import ATP- 92.8 0.058 2E-06 54.5 3.4 26 260-285 29-54 (359)
404 3lxw_A GTPase IMAP family memb 92.7 1.3 4.4E-05 41.8 12.7 24 261-284 21-44 (247)
405 2wjy_A Regulator of nonsense t 92.7 0.095 3.3E-06 58.6 5.4 24 262-285 372-395 (800)
406 3sop_A Neuronal-specific septi 92.7 0.054 1.8E-06 52.5 3.0 23 263-285 4-26 (270)
407 4f4c_A Multidrug resistance pr 92.7 0.29 9.9E-06 57.8 9.7 26 260-285 1104-1129(1321)
408 4f4c_A Multidrug resistance pr 92.7 0.27 9.1E-06 58.1 9.4 26 260-285 443-468 (1321)
409 1g8f_A Sulfate adenylyltransfe 92.7 0.078 2.7E-06 56.1 4.4 27 261-287 395-421 (511)
410 1s8n_A Putative antiterminator 92.7 0.00098 3.4E-08 61.2 -9.1 53 112-172 67-120 (205)
411 3hzh_A Chemotaxis response reg 92.6 0.00094 3.2E-08 58.6 -8.9 53 112-171 92-145 (157)
412 2ihy_A ABC transporter, ATP-bi 92.6 0.054 1.8E-06 52.7 2.9 26 260-285 46-71 (279)
413 2f1r_A Molybdopterin-guanine d 92.6 0.038 1.3E-06 49.8 1.6 25 262-286 3-27 (171)
414 2nq2_C Hypothetical ABC transp 92.6 0.054 1.8E-06 51.9 2.8 26 260-285 30-55 (253)
415 3kht_A Response regulator; PSI 92.6 0.001 3.6E-08 57.0 -8.6 53 112-171 60-116 (144)
416 2qsj_A DNA-binding response re 92.5 0.0014 4.9E-08 56.8 -7.8 53 112-171 59-112 (154)
417 3tmk_A Thymidylate kinase; pho 92.5 0.11 3.6E-06 48.7 4.6 28 261-288 5-32 (216)
418 3lv8_A DTMP kinase, thymidylat 92.5 0.071 2.4E-06 50.6 3.5 26 261-286 27-52 (236)
419 1nrj_B SR-beta, signal recogni 92.5 0.081 2.8E-06 48.5 3.8 26 260-285 11-36 (218)
420 1mvo_A PHOP response regulator 92.5 0.00058 2E-08 57.9 -10.2 53 112-171 56-109 (136)
421 2f9l_A RAB11B, member RAS onco 92.4 0.069 2.4E-06 48.4 3.2 23 262-284 6-28 (199)
422 1p2f_A Response regulator; DRR 92.4 0.0015 5.1E-08 60.6 -8.3 53 112-171 52-105 (220)
423 3eul_A Possible nitrate/nitrit 92.4 0.00096 3.3E-08 57.9 -9.1 53 112-171 70-123 (152)
424 2yyz_A Sugar ABC transporter, 92.4 0.072 2.4E-06 53.8 3.6 26 260-285 28-53 (359)
425 2it1_A 362AA long hypothetical 92.4 0.071 2.4E-06 53.9 3.5 26 260-285 28-53 (362)
426 1oix_A RAS-related protein RAB 92.4 0.066 2.3E-06 48.4 3.0 24 262-285 30-53 (191)
427 1z47_A CYSA, putative ABC-tran 92.4 0.069 2.4E-06 53.9 3.4 26 260-285 40-65 (355)
428 2dyk_A GTP-binding protein; GT 92.4 0.071 2.4E-06 45.9 3.1 23 262-284 2-24 (161)
429 2qzj_A Two-component response 92.4 0.00051 1.7E-08 58.7 -10.8 52 112-171 57-109 (136)
430 4e7p_A Response regulator; DNA 92.3 0.0017 5.8E-08 56.2 -7.5 53 112-171 75-128 (150)
431 3v9p_A DTMP kinase, thymidylat 92.3 0.062 2.1E-06 50.7 2.8 26 261-286 25-50 (227)
432 3rlf_A Maltose/maltodextrin im 92.3 0.073 2.5E-06 54.2 3.5 26 260-285 28-53 (381)
433 3sy8_A ROCR; TIM barrel phosph 92.3 0.0014 4.7E-08 67.4 -9.5 53 112-171 58-116 (400)
434 1v43_A Sugar-binding transport 92.3 0.075 2.6E-06 53.9 3.5 26 260-285 36-61 (372)
435 2hqr_A Putative transcriptiona 92.2 0.0017 5.7E-08 60.4 -8.3 51 113-171 50-103 (223)
436 3hdv_A Response regulator; PSI 92.2 0.0014 4.9E-08 55.4 -8.0 53 112-171 61-115 (136)
437 1dcf_A ETR1 protein; beta-alph 92.1 0.0026 8.9E-08 53.9 -6.5 53 112-171 59-117 (136)
438 3d31_A Sulfate/molybdate ABC t 92.1 0.063 2.1E-06 54.0 2.7 26 260-285 25-50 (348)
439 1lw7_A Transcriptional regulat 92.1 0.073 2.5E-06 53.7 3.2 27 261-287 170-196 (365)
440 3cr8_A Sulfate adenylyltranfer 92.1 0.054 1.8E-06 58.0 2.3 27 260-286 368-394 (552)
441 1g29_1 MALK, maltose transport 92.1 0.079 2.7E-06 53.8 3.4 26 260-285 28-53 (372)
442 1z2a_A RAS-related protein RAB 92.0 0.087 3E-06 45.6 3.2 23 262-284 6-28 (168)
443 3ld9_A DTMP kinase, thymidylat 92.0 0.093 3.2E-06 49.3 3.6 27 261-287 21-47 (223)
444 1ewq_A DNA mismatch repair pro 92.0 0.24 8.2E-06 55.0 7.4 24 261-284 576-599 (765)
445 3lua_A Response regulator rece 91.9 0.00071 2.4E-08 57.8 -10.4 53 112-171 59-115 (140)
446 1zh2_A KDP operon transcriptio 91.9 0.00078 2.7E-08 55.6 -9.8 52 112-171 54-106 (121)
447 2xzl_A ATP-dependent helicase 91.9 0.13 4.4E-06 57.6 5.2 22 262-283 376-397 (802)
448 1k68_A Phytochrome response re 91.9 0.0026 8.8E-08 53.7 -6.9 53 112-171 64-119 (140)
449 2pjz_A Hypothetical protein ST 91.8 0.073 2.5E-06 51.3 2.7 25 261-285 30-54 (263)
450 1wb9_A DNA mismatch repair pro 91.8 0.29 9.8E-06 54.7 7.8 24 261-284 607-630 (800)
451 2bbs_A Cystic fibrosis transme 91.8 0.077 2.6E-06 52.0 2.9 27 259-285 62-88 (290)
452 4ag6_A VIRB4 ATPase, type IV s 91.8 0.14 4.7E-06 52.1 4.9 34 260-293 34-70 (392)
453 2zay_A Response regulator rece 91.8 0.0011 3.9E-08 56.9 -9.3 53 112-171 61-116 (147)
454 2ce2_X GTPase HRAS; signaling 91.8 0.09 3.1E-06 45.2 3.0 24 262-285 4-27 (166)
455 1kao_A RAP2A; GTP-binding prot 91.7 0.097 3.3E-06 45.1 3.2 24 262-285 4-27 (167)
456 2wji_A Ferrous iron transport 91.7 0.092 3.2E-06 46.0 3.0 22 262-283 4-25 (165)
457 1g41_A Heat shock protein HSLU 91.7 0.02 6.8E-07 59.5 -1.6 58 343-404 127-188 (444)
458 1f2t_A RAD50 ABC-ATPase; DNA d 91.7 0.087 3E-06 46.0 2.8 24 262-285 24-47 (149)
459 3q9s_A DNA-binding response re 91.7 0.0011 3.7E-08 63.4 -10.5 52 112-171 90-142 (249)
460 3gd7_A Fusion complex of cysti 91.7 0.093 3.2E-06 53.6 3.4 26 259-284 45-70 (390)
461 2zej_A Dardarin, leucine-rich 91.6 0.077 2.6E-06 47.4 2.5 22 262-283 3-24 (184)
462 2lkc_A Translation initiation 91.6 0.13 4.4E-06 45.1 3.9 25 260-284 7-31 (178)
463 1gm5_A RECG; helicase, replica 91.6 1.3 4.6E-05 49.1 12.9 24 261-284 389-412 (780)
464 3gt7_A Sensor protein; structu 91.5 0.0016 5.5E-08 56.8 -8.7 53 112-171 60-115 (154)
465 2p67_A LAO/AO transport system 91.5 0.38 1.3E-05 48.0 7.7 25 261-285 56-80 (341)
466 1u8z_A RAS-related protein RAL 91.5 0.11 3.6E-06 44.9 3.2 23 262-284 5-27 (168)
467 1ek0_A Protein (GTP-binding pr 91.5 0.11 3.6E-06 45.1 3.2 24 262-285 4-27 (170)
468 4tmk_A Protein (thymidylate ki 91.5 0.11 3.7E-06 48.5 3.4 25 261-285 3-27 (213)
469 2wsm_A Hydrogenase expression/ 91.5 0.14 4.6E-06 47.1 4.1 25 261-285 30-54 (221)
470 1oxx_K GLCV, glucose, ABC tran 91.5 0.065 2.2E-06 54.0 2.0 26 260-285 30-55 (353)
471 4a1f_A DNAB helicase, replicat 91.5 0.14 4.9E-06 51.1 4.5 34 260-293 45-81 (338)
472 3ilh_A Two component response 91.5 0.0011 3.6E-08 56.8 -9.8 53 112-171 69-127 (146)
473 1ko7_A HPR kinase/phosphatase; 91.4 0.11 3.9E-06 51.3 3.7 25 260-284 143-167 (314)
474 3nh6_A ATP-binding cassette SU 91.4 0.071 2.4E-06 52.7 2.2 27 259-285 78-104 (306)
475 1z0j_A RAB-22, RAS-related pro 91.4 0.11 3.8E-06 45.0 3.2 24 262-285 7-30 (170)
476 2o8b_B DNA mismatch repair pro 91.4 0.75 2.6E-05 52.7 10.8 22 261-282 789-810 (1022)
477 3t8y_A CHEB, chemotaxis respon 91.4 0.0027 9.2E-08 56.1 -7.5 52 112-171 80-134 (164)
478 2nzj_A GTP-binding protein REM 91.4 0.1 3.6E-06 45.5 3.0 23 262-284 5-27 (175)
479 2gj8_A MNME, tRNA modification 91.3 0.1 3.4E-06 46.3 2.9 24 261-284 4-27 (172)
480 2j9r_A Thymidine kinase; TK1, 91.3 0.16 5.4E-06 47.4 4.3 31 262-292 29-62 (214)
481 3vkw_A Replicase large subunit 91.3 0.09 3.1E-06 54.5 2.9 23 261-283 161-183 (446)
482 1nij_A Hypothetical protein YJ 91.3 0.22 7.4E-06 49.2 5.6 24 262-285 5-28 (318)
483 1wms_A RAB-9, RAB9, RAS-relate 91.3 0.11 3.9E-06 45.4 3.2 23 262-284 8-30 (177)
484 1g16_A RAS-related protein SEC 91.3 0.11 3.7E-06 45.1 3.0 23 262-284 4-26 (170)
485 3i42_A Response regulator rece 91.3 0.0006 2E-08 57.1 -11.4 52 112-171 56-110 (127)
486 1z08_A RAS-related protein RAB 91.3 0.12 3.9E-06 45.0 3.2 23 262-284 7-29 (170)
487 1ky3_A GTP-binding protein YPT 91.2 0.12 4E-06 45.4 3.2 25 261-285 8-32 (182)
488 2npi_A Protein CLP1; CLP1-PCF1 91.1 0.11 3.8E-06 54.2 3.4 26 260-285 137-162 (460)
489 2vp4_A Deoxynucleoside kinase; 91.1 0.071 2.4E-06 50.0 1.7 25 260-284 19-43 (230)
490 1c1y_A RAS-related protein RAP 91.1 0.13 4.3E-06 44.5 3.2 23 262-284 4-26 (167)
491 3cz5_A Two-component response 91.0 0.002 6.9E-08 55.9 -8.6 53 112-171 60-113 (153)
492 1r8s_A ADP-ribosylation factor 91.0 0.13 4.6E-06 44.3 3.4 23 263-285 2-24 (164)
493 1r2q_A RAS-related protein RAB 91.0 0.13 4.3E-06 44.6 3.2 23 262-284 7-29 (170)
494 3q85_A GTP-binding protein REM 91.0 0.12 4.1E-06 44.9 3.0 21 263-283 4-24 (169)
495 2gks_A Bifunctional SAT/APS ki 91.0 0.15 5.1E-06 54.5 4.3 35 261-295 372-409 (546)
496 3tui_C Methionine import ATP-b 91.0 0.13 4.3E-06 52.1 3.5 27 259-285 52-78 (366)
497 1upt_A ARL1, ADP-ribosylation 91.0 0.14 4.8E-06 44.5 3.4 24 261-284 7-30 (171)
498 2erx_A GTP-binding protein DI- 90.9 0.12 4.2E-06 44.8 3.0 23 262-284 4-26 (172)
499 1knx_A Probable HPR(Ser) kinas 90.9 0.089 3.1E-06 52.0 2.3 31 259-290 145-175 (312)
500 3q72_A GTP-binding protein RAD 90.9 0.11 3.7E-06 45.0 2.7 22 262-283 3-24 (166)
No 1
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.9e-44 Score=379.76 Aligned_cols=370 Identities=40% Similarity=0.647 Sum_probs=240.5
Q ss_pred HHHHHHHHHHHHhhhchhccCCchHHHHHHHHHHHHHHHHhHhh---------hccCChhHHHHHHHHHHHHHHHHHHHH
Q psy2637 128 HHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVN---------CYYGSGEKWERAQRLQEKMKNNLKMAK 198 (502)
Q Consensus 128 ~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~d~l~k~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (502)
...+|+.++..|. ..|..|++++|+.+|+.|++||.+.++.+ ......+|.+|++.+++.+.......+
T Consensus 7 ~~~~A~~~~~~Av--~~D~~g~~~eA~~~Y~~a~~~l~~~~k~e~~~~~~k~~ir~k~~ey~~Rae~Lk~~l~k~~~~~~ 84 (444)
T 2zan_A 7 NLQKAIDLASKAA--QEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQ 84 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 4568999999998 66778999999999999999999877543 224455677777777666543211000
Q ss_pred HH--------------hh------hhhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC
Q psy2637 199 ER--------------LS------ILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR 258 (502)
Q Consensus 199 ~~--------------~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~ 258 (502)
.. .. .......+.+.+...+....++++|++|+|++.+++.|.+.+.+|..+++++.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~ 164 (444)
T 2zan_A 85 KPVKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKR 164 (444)
T ss_dssp ---------------------------------------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGG
T ss_pred cccccccCCcccccCCCCcccccccchHHHHHHHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccC
Confidence 00 00 00111223334455566678899999999999999999999988888888877656
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc-cCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC-NATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERK 337 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~-~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~ 337 (502)
.++.++||+||||||||++|+++|+.+ +.+|+.++++++.+.+.|..+..+..+|..+....|+||||||||.+.+.+.
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~ 244 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRS 244 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCC
Confidence 677999999999999999999999999 8999999999999999999888889999999999999999999999988877
Q ss_pred cChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCH
Q psy2637 338 EGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQ 417 (502)
Q Consensus 338 ~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~ 417 (502)
........++++.++..+++.... ..+++||+|||.++.++++++|||+..+.+++|+.++|.+|++.++...+..+++
T Consensus 245 ~~~~~~~~~~~~~lL~~l~~~~~~-~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~ 323 (444)
T 2zan_A 245 ENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTE 323 (444)
T ss_dssp CCCCGGGHHHHHHHHTTTTCSSCC-CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCH
T ss_pred CccccHHHHHHHHHHHHHhCcccC-CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCH
Confidence 666677788899999988876532 3569999999999999999999999899999999999999999999887766789
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhh-h----------------------------------hhccc-
Q psy2637 418 LELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQV-I----------------------------------KVDLK- 461 (502)
Q Consensus 418 ~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~-~----------------------------------~v~~~- 461 (502)
.++..++..+.||+++||..+|++|++.++|+...... . .+...
T Consensus 324 ~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (444)
T 2zan_A 324 ADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDK 403 (444)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhh
Confidence 99999999999999999999999999999998643210 0 00000
Q ss_pred -CCCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q psy2637 462 -SVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYGDV 500 (502)
Q Consensus 462 -~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g~~ 500 (502)
....|+++||..|++.++||++.++++.|++|.++||..
T Consensus 404 ~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~~~~ 443 (444)
T 2zan_A 404 LLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQE 443 (444)
T ss_dssp BCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSCTTT
T ss_pred ccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCC
Confidence 124799999999999999999999999999999999974
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-43 Score=358.65 Aligned_cols=260 Identities=33% Similarity=0.559 Sum_probs=226.2
Q ss_pred hcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccch
Q psy2637 219 LEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297 (502)
Q Consensus 219 ~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l 297 (502)
+...|.++|+||+|++.++++|++.+.+|..+|++|.+++ .+++++|||||||||||++|+++|++++.+|+.++++++
T Consensus 139 ~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l 218 (405)
T 4b4t_J 139 VEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL 218 (405)
T ss_dssp EECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHh
Confidence 3456889999999999999999999999999999999876 667999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccCh---hHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCC
Q psy2637 298 TSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGE---HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR 374 (502)
Q Consensus 298 ~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~---~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~ 374 (502)
.++|.|++++.++.+|..|+...||||||||||.+++.+..+. .....+++.+++..++|.... .+|+||+|||+
T Consensus 219 ~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNr 296 (405)
T 4b4t_J 219 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--KNIKIIMATNR 296 (405)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESC
T ss_pred hccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC--CCeEEEeccCC
Confidence 9999999999999999999999999999999999998875432 334567888999999998654 45999999999
Q ss_pred CCCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhh
Q psy2637 375 PQELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNA 452 (502)
Q Consensus 375 ~~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~ 452 (502)
|+.||++++| ||+..|+|++|+.++|.+||+.++.+.... .+.+++.+|+.++||||+||.++|++|++.++|+.
T Consensus 297 pd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~-- 373 (405)
T 4b4t_J 297 LDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER-- 373 (405)
T ss_dssp SSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT--
T ss_pred hhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC--
Confidence 9999999999 999999999999999999999999876543 45689999999999999999999999999999874
Q ss_pred hhhhhhcccCCCcccHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy2637 453 DQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAW 493 (502)
Q Consensus 453 ~~~~~v~~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w 493 (502)
...|+.+||..|++++.+......+.-++.|
T Consensus 374 ----------~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 374 ----------RIHVTQEDFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp ----------CSBCCHHHHHHHHHHHHHHHTCC--------
T ss_pred ----------CCCcCHHHHHHHHHHHhCccccccchhHhhh
Confidence 3579999999999987665444445444444
No 3
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.8e-40 Score=335.24 Aligned_cols=280 Identities=45% Similarity=0.757 Sum_probs=249.6
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-cCceEEeeccchh
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-NATFFSISAASLT 298 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-~~~fv~i~~s~l~ 298 (502)
...++++|++|+|++.+++.|.+.+.+|..+++++.+...+++++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 346788999999999999999999999999999988766778999999999999999999999999 8999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCC
Q psy2637 299 SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQEL 378 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l 378 (502)
+.+.|..+..+..+|..+...+|+||||||+|.+.+.+.........+++++++..+++.... ..+++||+|||.++.+
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVL 162 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEESCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc-CCCEEEEEecCCcccC
Confidence 999999999999999999999999999999999998877766677888999999999987543 3569999999999999
Q ss_pred cHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhh-h-
Q psy2637 379 DEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQV-I- 456 (502)
Q Consensus 379 ~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~-~- 456 (502)
+++++|||+..+++++|+.++|.+|++.++...+..+++.++..+++.+.||+++||..+|++|++.++++...... .
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~ 242 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKK 242 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEE
T ss_pred CHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999989999999999999999999988877778999999999999999999999999999999998643210 0
Q ss_pred ---------------------------------hhccc--CCCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q psy2637 457 ---------------------------------KVDLK--SVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYGDV 500 (502)
Q Consensus 457 ---------------------------------~v~~~--~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g~~ 500 (502)
.+... ....|+++||..|++.++||++.++++.|++|.++||..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 321 (322)
T 1xwi_A 243 VRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQE 321 (322)
T ss_dssp EEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCSC
T ss_pred hccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccC
Confidence 00000 124799999999999999999999999999999999974
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-41 Score=350.13 Aligned_cols=260 Identities=34% Similarity=0.580 Sum_probs=223.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
+..|.++|+||+|++.+++.|++.+.+|..+++++..++ .++++||||||||||||++|+++|++++.+|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 356789999999999999999999999999999999876 6789999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccCh---hHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 299 SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGE---HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~---~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
++|.|.+++.++.+|..|+...||||||||+|.+++.+.... .....+.+..++..+++.... .+|+||+|||++
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrp 358 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRP 358 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCT
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC--CcEEEEeCCCCc
Confidence 999999999999999999999999999999999998875432 334556778889999987654 459999999999
Q ss_pred CCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 376 QELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 376 ~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
+.||++++| ||++.|+|++|+.++|.+||+.++...... .+.+++.+|+.++||+|+||.++|++|++.++++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~--- 434 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR--- 434 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT---
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 999999999 999999999999999999999999876543 45678999999999999999999999999999874
Q ss_pred hhhhhcccCCCcccHHHHHHHHHhhcCCCC-HHHHHHHHHHH
Q psy2637 454 QVIKVDLKSVRNISYRDFLESLKRIRRSVS-PSSLIQYEAWN 494 (502)
Q Consensus 454 ~~~~v~~~~~~~It~~d~~~al~~~~~s~~-~~~l~~~~~w~ 494 (502)
...|+.+||..|++.+.+... .+...+|.+|.
T Consensus 435 ---------~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 435 ---------RKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp ---------CSSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred ---------CCccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 356999999999988755432 35567788884
No 5
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=341.08 Aligned_cols=297 Identities=50% Similarity=0.917 Sum_probs=255.2
Q ss_pred hhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHH
Q psy2637 204 LSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283 (502)
Q Consensus 204 ~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~ 283 (502)
...++.+.+.+.+.+....++.+|++|+|++.+++.+.+.+..+...++++.+.+.++.++||+||||||||++|+++|+
T Consensus 60 ~~~~~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 60 KNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp TTSCHHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred ccCChHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34455566667777788889999999999999999999999888878887777777789999999999999999999999
Q ss_pred HccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCC
Q psy2637 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSE 363 (502)
Q Consensus 284 ~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 363 (502)
.++.+|+.++|+++...+.|.....+..+|..+....|+||||||||.+.+.+..+......+++.+++..+++......
T Consensus 140 ~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 140 QSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp HTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred HcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 99999999999999999999988889999999998899999999999998877666666778888999999998766556
Q ss_pred CcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy2637 364 HRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAA 443 (502)
Q Consensus 364 ~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~ 443 (502)
.+++||+|||.++.++++++|||+..+++++|+.++|.+++..++...+..+++.+++.+++.+.||++++|..||++||
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREAS 299 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999989999999999999999999988877889999999999999999999999999999
Q ss_pred hhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q psy2637 444 LGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYGDV 500 (502)
Q Consensus 444 ~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g~~ 500 (502)
+++++++.+.....+.......|+.+||..|+..++|+++.+++++|+.|.+.||..
T Consensus 300 ~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 300 LGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp THHHHHCCC----------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred HHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 999999887777777777778999999999999999999999999999999999974
No 6
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.8e-40 Score=336.64 Aligned_cols=282 Identities=46% Similarity=0.785 Sum_probs=246.9
Q ss_pred HhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccch
Q psy2637 218 ILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297 (502)
Q Consensus 218 ~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l 297 (502)
++...++++|++|+|++.+++.+.+++..+..+++++.....++.++||+||||||||++|+++|++++.+|+.++|+++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 34567889999999999999999999999998898888877788999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCC
Q psy2637 298 TSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQE 377 (502)
Q Consensus 298 ~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~ 377 (502)
.+.+.|..+..+..+|..+....|+||||||||.+.+.+.........+++..++..+++.... ..+++||+|||.++.
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIPWQ 166 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEESCGGG
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc-CCceEEEEecCChhh
Confidence 9999999999999999999999999999999999988776666667788889999999887543 346999999999999
Q ss_pred CcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhh
Q psy2637 378 LDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIK 457 (502)
Q Consensus 378 l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~ 457 (502)
++++++|||+..+++++|+.++|.+|++.++...+..+++.++..++..+.||+++||..+|++|++.++++..+.....
T Consensus 167 ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~ 246 (322)
T 3eie_A 167 LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFK 246 (322)
T ss_dssp SCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEE
T ss_pred CCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999888778999999999999999999999999999999999875432110
Q ss_pred h-----------------------------c--ccCCCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q psy2637 458 V-----------------------------D--LKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYGDV 500 (502)
Q Consensus 458 v-----------------------------~--~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g~~ 500 (502)
. . ......|+.+||..|++.++|+++.+++++|++|.++||..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 247 DVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp ECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred hhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 0 0 00125699999999999999999999999999999999975
No 7
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-41 Score=349.87 Aligned_cols=253 Identities=32% Similarity=0.570 Sum_probs=226.1
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
+..|.++|+||+|++.++++|.+.+.+|..++++|...+ .++++||||||||||||++|+++|.+++.+|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 456889999999999999999999999999999999876 5679999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccCh---hHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 299 SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGE---HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~---~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
++|.|+.++.++.+|..|+...||||||||+|.+++.+..+. .....+.+..++..++|.... .+++||+|||++
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNrp 331 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNKI 331 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESCS
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC--CCEEEEEeCCCh
Confidence 999999999999999999999999999999999998875432 234566778899999987654 459999999999
Q ss_pred CCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 376 QELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 376 ~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
+.||++++| ||+..|+|++|+.++|.+||+.++.+.... .+.+++.+|..++||||+||.++|++|++.++++.
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~--- 407 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER--- 407 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 999999999 999999999999999999999999876543 45679999999999999999999999999999874
Q ss_pred hhhhhcccCCCcccHHHHHHHHHhhcCCCCHHHH
Q psy2637 454 QVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSL 487 (502)
Q Consensus 454 ~~~~v~~~~~~~It~~d~~~al~~~~~s~~~~~l 487 (502)
...|+.+||..|++.+.++...+++
T Consensus 408 ---------~~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 408 ---------RMQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp ---------CSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred ---------CCccCHHHHHHHHHHHhCCCChhhH
Confidence 3569999999999988776554443
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=348.17 Aligned_cols=250 Identities=31% Similarity=0.589 Sum_probs=223.9
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
..|.++|+||+|++.+++.|.+.+.+|..+|++|..++ .+++++|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 46788999999999999999999999999999999876 67799999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccCh---hHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC
Q psy2637 300 KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGE---HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ 376 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~---~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~ 376 (502)
+|.|.++..++.+|..|+...||||||||+|.+++.+.... .....+.+..||..++|.... .+++||+|||+|+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTT
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC--CCeEEEEecCCch
Confidence 99999999999999999999999999999999998874432 334566788899999998654 4589999999999
Q ss_pred CCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhh
Q psy2637 377 ELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQ 454 (502)
Q Consensus 377 ~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~ 454 (502)
.||++++| ||+..|+|++|+.++|.+||+.++.+.... .+.++..+|+.++||||+||.++|++|++.++++.
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~---- 406 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD---- 406 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 99999998 699999999999999999999999876442 45689999999999999999999999999999874
Q ss_pred hhhhcccCCCcccHHHHHHHHHhhcCCCCHH
Q psy2637 455 VIKVDLKSVRNISYRDFLESLKRIRRSVSPS 485 (502)
Q Consensus 455 ~~~v~~~~~~~It~~d~~~al~~~~~s~~~~ 485 (502)
...|+.+||..|++.+.++...+
T Consensus 407 --------~~~i~~~d~~~Al~~v~~~~k~e 429 (437)
T 4b4t_L 407 --------RDHINPDDLMKAVRKVAEVKKLE 429 (437)
T ss_dssp --------CSSBCHHHHHHHHHHHHHTCC--
T ss_pred --------CCCCCHHHHHHHHHHHHhccCcc
Confidence 35799999999999988765443
No 9
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-40 Score=346.64 Aligned_cols=249 Identities=33% Similarity=0.595 Sum_probs=225.1
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
..|+++|+||+|.+.+++.|.+.+.+|..+|++|...+ .++++||||||||||||++|+++|.+++.+|+.++++++.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 46788999999999999999999999999999999876 56899999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhH---HHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC
Q psy2637 300 KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHE---ASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ 376 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~---~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~ 376 (502)
+|.|.+++.++.+|..|+...||||||||+|.+++.+..+... ...+....++..++|.... .+|+||||||+|+
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRVD 331 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC--CCEEEEEeCCCch
Confidence 9999999999999999999999999999999999887654332 3456778899999998655 4589999999999
Q ss_pred CCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhh
Q psy2637 377 ELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQ 454 (502)
Q Consensus 377 ~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~ 454 (502)
.||++++| ||+..|+|++|+.++|.+||+.++.+.... .+.+++.+|+.++||||+||.++|++|++.++++.
T Consensus 332 ~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~---- 406 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG---- 406 (434)
T ss_dssp CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 99999999 999999999999999999999999876543 45679999999999999999999999999999874
Q ss_pred hhhhcccCCCcccHHHHHHHHHhhcCCCCH
Q psy2637 455 VIKVDLKSVRNISYRDFLESLKRIRRSVSP 484 (502)
Q Consensus 455 ~~~v~~~~~~~It~~d~~~al~~~~~s~~~ 484 (502)
...|+.+||..|+..++|+.+.
T Consensus 407 --------~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 407 --------QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp --------CSSBCHHHHHHHHHSCSSSCCC
T ss_pred --------CCCcCHHHHHHHHHHHhCCCCc
Confidence 3579999999999999987653
No 10
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=3.7e-40 Score=329.59 Aligned_cols=293 Identities=71% Similarity=1.112 Sum_probs=246.0
Q ss_pred HHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCce
Q psy2637 210 LAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATF 289 (502)
Q Consensus 210 ~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~f 289 (502)
+.+.+++.+....++.+|++++|++.+++.+.+.+..+..+++++.+++.++.++||+||||||||++|+++|+.++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 45566777777888999999999999999999999988888888887777789999999999999999999999999999
Q ss_pred EEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCC-CCcEEE
Q psy2637 290 FSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNS-EHRLLV 368 (502)
Q Consensus 290 v~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~-~~~v~v 368 (502)
+.++|+++.+.+.+........+|..+....|++|||||+|.+...+.........+.+..++..+++..... ..+++|
T Consensus 83 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~v 162 (297)
T 3b9p_A 83 LNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVV 162 (297)
T ss_dssp EEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEE
T ss_pred EEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 9999999999888888888899999999999999999999999887665544555677778888888764432 246999
Q ss_pred EEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHH
Q psy2637 369 MGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIR 448 (502)
Q Consensus 369 IaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~air 448 (502)
|++||.++.+++++++||+..+.+++|+.++|..+++.++...+..+++.++..++..+.|+++++|..+|++|++.+++
T Consensus 163 i~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r 242 (297)
T 3b9p_A 163 LAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIR 242 (297)
T ss_dssp EEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHH
T ss_pred EeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998999999999999999999999888788899999999999999999999999999999999
Q ss_pred hhhhhhhhhhcccCCCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCC
Q psy2637 449 ELNADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYGDVSL 502 (502)
Q Consensus 449 el~~~~~~~v~~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g~~~~ 502 (502)
++.+...+.+..+....|+.+||..|+..++|++++++++.|++|.+.||+.++
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 296 (297)
T 3b9p_A 243 ELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDITI 296 (297)
T ss_dssp TCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC--------
T ss_pred HHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCeec
Confidence 998877777777777899999999999999999999999999999999998764
No 11
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=2.6e-40 Score=343.90 Aligned_cols=292 Identities=70% Similarity=1.100 Sum_probs=247.9
Q ss_pred HHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceE
Q psy2637 211 AQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFF 290 (502)
Q Consensus 211 ~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv 290 (502)
.+.+.+.++...++.+|++|+|++.+++.+.+++..+...++++.+++.++.++||+||||||||++|+++|+.++.+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 98 ANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp CTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 33445566778899999999999999999999999888888888888777899999999999999999999999999999
Q ss_pred EeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEE
Q psy2637 291 SISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMG 370 (502)
Q Consensus 291 ~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIa 370 (502)
.++|+++.+.+.|.....+..+|..+....|+||||||||.+...+.........+++..++..+++.......+++||+
T Consensus 178 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~ 257 (389)
T 3vfd_A 178 NISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMG 257 (389)
T ss_dssp EECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEE
T ss_pred EeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEE
Confidence 99999999999999999899999999999999999999999988776666667788899999999988766667899999
Q ss_pred EcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhh
Q psy2637 371 ATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIREL 450 (502)
Q Consensus 371 aTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel 450 (502)
|||.++.++++++|||+..++++.|+.++|.++++.++...+..+++.++..++..+.|+++++|..|+++||+++++++
T Consensus 258 atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel 337 (389)
T 3vfd_A 258 ATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 337 (389)
T ss_dssp EESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTS
T ss_pred ecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998889999999999999999999998888999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccCCCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCC
Q psy2637 451 NADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYGDVSL 502 (502)
Q Consensus 451 ~~~~~~~v~~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g~~~~ 502 (502)
.+...+.+.......|+.+||..++..+.++++.+.++.|++|.+.||+.++
T Consensus 338 ~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~~~ 389 (389)
T 3vfd_A 338 KPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDTTV 389 (389)
T ss_dssp CCC---CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC----
T ss_pred hhhhhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCccC
Confidence 8888888888888899999999999999999999999999999999999875
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=3.8e-39 Score=331.20 Aligned_cols=288 Identities=45% Similarity=0.777 Sum_probs=236.3
Q ss_pred HHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 212 QVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 212 ~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
..+...+....++++|++|+|++.+++.|.+++..+..+++++.+...++.++||+||||||||++|+++|++++.+|+.
T Consensus 35 ~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 114 (355)
T 2qp9_X 35 GALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS 114 (355)
T ss_dssp ------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred HHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 33444455567889999999999999999999999988888888777778999999999999999999999999999999
Q ss_pred eeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEE
Q psy2637 292 ISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGA 371 (502)
Q Consensus 292 i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaa 371 (502)
++++++.+.+.|..+..+..+|..+....|+||||||||.+.+.+.........++++.++..+++.... ..+++||+|
T Consensus 115 v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~a 193 (355)
T 2qp9_X 115 VSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGVLVLGA 193 (355)
T ss_dssp EEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----CCEEEEEE
T ss_pred eeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc-CCCeEEEee
Confidence 9999999999999999999999999998999999999999988776666667788889999999877543 346999999
Q ss_pred cCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhh
Q psy2637 372 TNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELN 451 (502)
Q Consensus 372 TN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~ 451 (502)
||.++.++++++|||+..+++++|+.++|.+|++.++...+..+++.+++.|+..+.||+++||..+|+.|...++++..
T Consensus 194 tn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~ 273 (355)
T 2qp9_X 194 TNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 273 (355)
T ss_dssp ESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877777899999999999999999999999999999998863
Q ss_pred hhhhh-----------------------------hhcc--cCCCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q psy2637 452 ADQVI-----------------------------KVDL--KSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYGDV 500 (502)
Q Consensus 452 ~~~~~-----------------------------~v~~--~~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g~~ 500 (502)
..... .+.. .....|+.+||..|++.++|+++.++++.|++|.++||..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~~ 353 (355)
T 2qp9_X 274 SATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 353 (355)
T ss_dssp HCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC--
T ss_pred HhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccC
Confidence 22100 0000 0135699999999999999999999999999999999974
No 13
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-40 Score=342.08 Aligned_cols=252 Identities=33% Similarity=0.593 Sum_probs=224.0
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
..|.++|+||+|++.+++.|.+.+.+|..+|+++..++ .+++++|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 46788999999999999999999999999999999876 67899999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC---hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC
Q psy2637 300 KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG---EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ 376 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~ 376 (502)
+|.|.++..++.+|..|+...||||||||+|.+++.+... ......+++.+|+..++|+... .+++||+|||+++
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRAD 322 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCSS
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChh
Confidence 9999999999999999999999999999999999887432 2334577889999999998665 4599999999999
Q ss_pred CCcHHHHc--cccceeeec-CCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 377 ELDEAVLR--RFSKRIYVT-LPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 377 ~l~~~l~r--Rf~~~I~i~-~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
.||++++| ||+..|+|+ +|+.++|.+|++.++.+.... .+.+++.+|..++||||+||.++|++|++.++++.
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--- 398 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--- 398 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC---
Confidence 99999999 999999996 899999999999999876542 45689999999999999999999999999999874
Q ss_pred hhhhhcccCCCcccHHHHHHHHHh-hcCCCCHHHH
Q psy2637 454 QVIKVDLKSVRNISYRDFLESLKR-IRRSVSPSSL 487 (502)
Q Consensus 454 ~~~~v~~~~~~~It~~d~~~al~~-~~~s~~~~~l 487 (502)
...|+.+||..|+.. ++++.+.+.+
T Consensus 399 ---------~~~i~~~d~~~A~~~~~~~~~~~~~~ 424 (428)
T 4b4t_K 399 ---------RYVILQSDLEEAYATQVKTDNTVDKF 424 (428)
T ss_dssp ---------CSSBCHHHHHHHHHHHSCSCCCSSCC
T ss_pred ---------CCCCCHHHHHHHHHHhhCccCCccHh
Confidence 357999999999976 4555554443
No 14
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.5e-41 Score=374.46 Aligned_cols=275 Identities=37% Similarity=0.648 Sum_probs=191.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~ 300 (502)
.+.++|++++|++++++.|.+.+.+|..+++++.+.+ .+++++|||||||||||++|+++|.+++.+|+.++++++.++
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 4678999999999999999999999999999998875 678999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhccccc---ChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCC
Q psy2637 301 YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE---GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQE 377 (502)
Q Consensus 301 ~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~ 377 (502)
|.|++++.++.+|+.|+...||||||||||.+++.+.. +......++.++||.+|+|.... .+|+||+|||+|+.
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~--~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDI 628 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS--SSEEEECC-CCSSS
T ss_pred ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC--CCEEEEEeCCCchh
Confidence 99999999999999999999999999999999988753 23446678999999999998665 45999999999999
Q ss_pred CcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhh
Q psy2637 378 LDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQV 455 (502)
Q Consensus 378 l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~ 455 (502)
||++++| ||++.|+|++|+.++|.+||+.++++.... .+.+++.||+.++||||+||.++|++|++.++|+.-....
T Consensus 629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~ 707 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 707 (806)
T ss_dssp SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHHHHHHHHHHHC---
T ss_pred CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999 999999999999999999999988765433 4678999999999999999999999999999998632211
Q ss_pred -h------------hhcccCCCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q psy2637 456 -I------------KVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYGD 499 (502)
Q Consensus 456 -~------------~v~~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g~ 499 (502)
. .......+.|+++||..|++.++||++++++++|++|.++|+.
T Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~ 764 (806)
T 3cf2_A 708 RRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp --------------------CCC----CCTTTC---------------CCCC-----
T ss_pred hhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 0 0011223579999999999999999999999999988888764
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.8e-36 Score=304.28 Aligned_cols=276 Identities=37% Similarity=0.648 Sum_probs=233.6
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
...++++|++|+|++.+++.+.+++..+..+++.+..++ .++.++||+||||||||++|+++|+.++.+|+.++|+++.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 456788999999999999999999999988888887665 5678999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC---hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 299 SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG---EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
+.+.|.....+..+|..+....|++|||||+|.+.+.+... ......+++..++..+++.... .+++||+|||.+
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~--~~v~vi~atn~~ 164 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRP 164 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT--SSEEEEEEESCG
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC--CCEEEEEecCCc
Confidence 99999988889999999999999999999999998765321 1123456677888888876533 469999999999
Q ss_pred CCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 376 QELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 376 ~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
+.++++++| ||+..+++++|+.++|.+|++.++...+.. .+.+++.++..+.||+++||.++|++|+..++++....
T Consensus 165 ~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~ 243 (301)
T 3cf0_A 165 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIES 243 (301)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999999999999876543 45678899999999999999999999999998765321
Q ss_pred hhh----------hhc---ccCCCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q psy2637 454 QVI----------KVD---LKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYG 498 (502)
Q Consensus 454 ~~~----------~v~---~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g 498 (502)
... ... ......|+.+||..|++.++|+++.++++.|+.|.++|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 244 EIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred hhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 110 000 012257999999999999999999999999999999883
No 16
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=4.1e-37 Score=327.73 Aligned_cols=276 Identities=33% Similarity=0.556 Sum_probs=227.1
Q ss_pred CCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhh
Q psy2637 223 SPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKY 301 (502)
Q Consensus 223 ~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~ 301 (502)
++..|++|+|++.+++.+.+++..+..+++++..++ .++.++||+||||||||++|+++|+.++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 456899999999999999999999888899888774 6678999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHH
Q psy2637 302 VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEA 381 (502)
Q Consensus 302 ~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~ 381 (502)
.|.....+.++|..+....|++|||||||.+.+.+.....+...+++..|+..+++.... .+++||+|||.++.++++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~--~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT--SCEEEEEEESCGGGBCGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC--CceEEEEecCCccccCHH
Confidence 999999999999999999999999999999998877666777888999999999876543 469999999999999999
Q ss_pred HHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhh-
Q psy2637 382 VLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKV- 458 (502)
Q Consensus 382 l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v- 458 (502)
+++ ||+..+++++|+.++|.+|++.++...... .+.++..++..+.||++++|..||++|+..++++..+.....-
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 999 999899999999999999999998766543 4567899999999999999999999999999998644321110
Q ss_pred ----cccCCCcccHHHHHHHHHhhcCCCCHHHHHHHH--HHHHHhCCCC
Q psy2637 459 ----DLKSVRNISYRDFLESLKRIRRSVSPSSLIQYE--AWNRDYGDVS 501 (502)
Q Consensus 459 ----~~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~--~w~~~~g~~~ 501 (502)
.......|+++||..|++.++|+...+.+-+.. .|++.+|-.|
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred ccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 011234699999999999999876555444444 6999999754
No 17
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.5e-35 Score=329.20 Aligned_cols=258 Identities=35% Similarity=0.566 Sum_probs=229.0
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~ 300 (502)
.+.++|+||+|++.++++|++++.+|+.+|+++..++ .++++||||||||||||++|+++|++++.+|+.++|+++.++
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4678999999999999999999999999999999886 678999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcH
Q psy2637 301 YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDE 380 (502)
Q Consensus 301 ~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~ 380 (502)
+.|..+..++.+|+.|..+.|+||||||||.+++.+.....+...++.++|+..++++... .+|+||+|||+++.+|+
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD~ 355 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDP 355 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTSCT
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc--CCEEEEEecCChhhcCH
Confidence 9999999999999999999999999999999999887777777788999999999988665 35999999999999999
Q ss_pred HHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhh
Q psy2637 381 AVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKV 458 (502)
Q Consensus 381 ~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v 458 (502)
+++| ||++.|++++|+..+|.+|++.++..... ..+.++..+|..+.||+++||..||++|...++++.........
T Consensus 356 ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~ 434 (806)
T 3cf2_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred HHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9999 99999999999999999999988876543 25678999999999999999999999999999987643322111
Q ss_pred -----cccCCCcccHHHHHHHHHhhcCCC
Q psy2637 459 -----DLKSVRNISYRDFLESLKRIRRSV 482 (502)
Q Consensus 459 -----~~~~~~~It~~d~~~al~~~~~s~ 482 (502)
.......|+.+||..|+..++|+.
T Consensus 435 ~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 435 ETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp CCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred cccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 111235689999999999988864
No 18
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=6.3e-33 Score=274.90 Aligned_cols=263 Identities=35% Similarity=0.599 Sum_probs=202.9
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~ 300 (502)
.|.++|++|+|.+.+++.+.+.+.+|..+++.+..++ ..+.+++|+||||||||++++++|..++.+++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 4677999999999999999999999999999888775 456779999999999999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcH
Q psy2637 301 YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDE 380 (502)
Q Consensus 301 ~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~ 380 (502)
+.+..+..+..+|..+....|+++|+||+|.+...+.........++.+.++..++|.... ..++++++||.|+.+|+
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~--~~~i~ia~tn~p~~LD~ 161 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPDIIDP 161 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST--TCEEEEEEESCGGGSCH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc--CCEEEEeecCChhhCCH
Confidence 8888888899999999888999999999999876543322233445677888889887554 34899999999999999
Q ss_pred HHHc--cccceeeecCCCHHHHHHHHHHHHhhc-CCC-CCHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhhHHhhhhhh
Q psy2637 381 AVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKH-GNP-LSQLELDAVAKLT--EGYSGSDLTNLAKDAALGPIRELNADQ 454 (502)
Q Consensus 381 ~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~-~~~-l~~~~l~~la~~t--~g~s~~dL~~L~~~a~~~airel~~~~ 454 (502)
+++| ||++.|++++|+.++|.+|++.++... ... ..+.+++.++..+ +||+++||..+|++|...++++.....
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~ 241 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQ 241 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999 999999999999999999999888642 122 2456789999875 599999999999999999998752211
Q ss_pred hhhhcccCCCcccHHHHHHHHHhhcCCCCHHHH
Q psy2637 455 VIKVDLKSVRNISYRDFLESLKRIRRSVSPSSL 487 (502)
Q Consensus 455 ~~~v~~~~~~~It~~d~~~al~~~~~s~~~~~l 487 (502)
... .......|+.+||..|++.++|+++.+++
T Consensus 242 ~~~-~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 242 KSG-NEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCCCCC-----
T ss_pred ccc-ccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 110 11123479999999999999999987664
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.98 E-value=3e-31 Score=263.21 Aligned_cols=266 Identities=37% Similarity=0.633 Sum_probs=210.9
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
..++.+|++++|++.+++.+.+.+..+...++.+..++ .++.++||+||||||||++|+++|+.++.+++.+++.++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 46778999999999999999999988888888877765 56789999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccCh---hHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC
Q psy2637 300 KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGE---HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ 376 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~---~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~ 376 (502)
.+.|.....+..+|..+....|+||||||+|.+.+.+.... .......+..++..+++.... .+++||+|||.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR--GDVKIIGATNRPD 167 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS--SSEEEEEECSCGG
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEeCCCch
Confidence 99999988899999999999999999999999987765432 222334455566666655433 4699999999999
Q ss_pred CCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhh
Q psy2637 377 ELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQ 454 (502)
Q Consensus 377 ~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~ 454 (502)
.+++++++ ||+..+.++.|+.++|.++++.++...... .+.++..++..+.|+++++|..+++.|...++++.
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~---- 242 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL---- 242 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT----
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc----
Confidence 99999999 999899999999999999999998776543 45578999999999999999999999999988865
Q ss_pred hhhhcccCCCcccHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhCCCC
Q psy2637 455 VIKVDLKSVRNISYRDFLESLKRIRR--SVSPSSLIQYEAWNRDYGDVS 501 (502)
Q Consensus 455 ~~~v~~~~~~~It~~d~~~al~~~~~--s~~~~~l~~~~~w~~~~g~~~ 501 (502)
...|+.+|+..|+..+.+ +.....-..+..|.+.||+-+
T Consensus 243 --------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
T 3h4m_A 243 --------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHH 283 (285)
T ss_dssp --------CSSBCHHHHHHHHHHHHHHHCCC------------------
T ss_pred --------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCC
Confidence 357999999999987643 234455778889999998743
No 20
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=2.2e-29 Score=246.45 Aligned_cols=245 Identities=36% Similarity=0.611 Sum_probs=201.2
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
+..++.+|++++|++.+++.+.+.+.. ...+..+..++ ..+.+++|+||||||||++|+++|..++.+++.++++++.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 346778999999999999999987654 33344444443 4567899999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC---hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 299 SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG---EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
..+.+.....+..+|+.+....|+++||||+|.+...+... ......+.+..++..+++... ..+++||+|||.+
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~ 160 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 160 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCc
Confidence 88888888888999999988889999999999998765432 122334567778888887653 3469999999999
Q ss_pred CCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 376 QELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 376 ~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
+.++++++| ||+..+.+++|+.++|.++++.++...... .+.++..++..+.||++++|..+++.|...+.++.
T Consensus 161 ~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~--- 236 (257)
T 1lv7_A 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--- 236 (257)
T ss_dssp TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC---
Confidence 999999998 999999999999999999999998765432 34567889999999999999999999998887653
Q ss_pred hhhhhcccCCCcccHHHHHHHHHhhcC
Q psy2637 454 QVIKVDLKSVRNISYRDFLESLKRIRR 480 (502)
Q Consensus 454 ~~~~v~~~~~~~It~~d~~~al~~~~~ 480 (502)
...|+.+||..|+..+..
T Consensus 237 ---------~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 237 ---------KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp ---------CSSBCHHHHHHHHHHHTT
T ss_pred ---------CCcccHHHHHHHHHHHhc
Confidence 357999999999987753
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=2.7e-29 Score=265.76 Aligned_cols=243 Identities=41% Similarity=0.649 Sum_probs=203.5
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~ 300 (502)
.+.++|++++|++++++++.+.+... ..+..+..++ ..+.++||+||||||||++|+++|.+++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l-~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFL-KDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHH-HCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHh-hChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 56779999999999999999987653 3455555554 456889999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhccccc---ChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCC
Q psy2637 301 YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE---GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQE 377 (502)
Q Consensus 301 ~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~---~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~ 377 (502)
+.|.....++.+|..+....|+||||||+|.+...++. +......+.++.++..+++.... .+++||++||.++.
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~--~~viVIaaTn~~~~ 166 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPDI 166 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG--GTEEEEEEESCGGG
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC--CCEEEEEecCChhh
Confidence 99988888899999999999999999999999876543 22233456778889888876543 46999999999999
Q ss_pred CcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhh
Q psy2637 378 LDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQV 455 (502)
Q Consensus 378 l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~ 455 (502)
++++++| ||+..+.+++|+.++|.+|++.++...... .+.++..++..+.|++++||.++|++|...+.++.
T Consensus 167 Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~----- 240 (476)
T 2ce7_A 167 LDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG----- 240 (476)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC-----
Confidence 9999998 999999999999999999999988865432 44568889999999999999999999998877653
Q ss_pred hhhcccCCCcccHHHHHHHHHhhcC
Q psy2637 456 IKVDLKSVRNISYRDFLESLKRIRR 480 (502)
Q Consensus 456 ~~v~~~~~~~It~~d~~~al~~~~~ 480 (502)
...|+.+||..|+..+.+
T Consensus 241 -------~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 241 -------RDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp -------CSSBCHHHHHHHHHHHC-
T ss_pred -------CCeecHHHHHHHHHHHhc
Confidence 357999999999988754
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=247.58 Aligned_cols=243 Identities=33% Similarity=0.546 Sum_probs=184.7
Q ss_pred CCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhh
Q psy2637 223 SPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKY 301 (502)
Q Consensus 223 ~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~ 301 (502)
++++|++++|++.+++.+.+++.. ...++.+...+ .++.++||+||||||||++|+++|++++.+++.++|+++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 356899999999999999988754 33344344333 4578899999999999999999999999999999999998888
Q ss_pred hhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccCh----hHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCC
Q psy2637 302 VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGE----HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQE 377 (502)
Q Consensus 302 ~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~----~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~ 377 (502)
.+.....+..+|..+....|++|||||+|.+...+.... .......+..++..+++... ..++++|+|||.++.
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADI 157 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhh
Confidence 888888888999999988899999999999976653321 11223345566777766533 346999999999999
Q ss_pred CcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHH-HHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhh
Q psy2637 378 LDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQL-ELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQ 454 (502)
Q Consensus 378 l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~-~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~ 454 (502)
++++++| ||+..+++++|+.++|.++++.++...+...... .+..++..+.|+++++|..+++.|+..+.++.
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~---- 233 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG---- 233 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC---------
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999 9998999999999999999999999877665544 45889999999999999999999998887653
Q ss_pred hhhhcccCCCcccHHHHHHHHHhhcC
Q psy2637 455 VIKVDLKSVRNISYRDFLESLKRIRR 480 (502)
Q Consensus 455 ~~~v~~~~~~~It~~d~~~al~~~~~ 480 (502)
...|+.+||..|+..+.+
T Consensus 234 --------~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 234 --------HTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp -----------CCBCCHHHHHHHHHH
T ss_pred --------CCCCCHHHHHHHHHHhcc
Confidence 346899999999987654
No 23
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=6.1e-32 Score=304.31 Aligned_cols=275 Identities=37% Similarity=0.642 Sum_probs=209.4
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
..+.+.|++++|++.+++.+.+++.++..+++.+..++ .++.++||+||||||||++|+++|..++.+|+.++++++.+
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 34677899999999999999999999988888777665 56788999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC---hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC
Q psy2637 300 KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG---EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ 376 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~ 376 (502)
.|.|..+..+..+|+.++...|+||||||||.+...+... ......++++.|+..+++.... .+++||+|||.++
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~--~~v~vI~tTN~~~ 627 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPD 627 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCG
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc--CCeEEEEecCCcc
Confidence 9999999999999999999999999999999998776532 2346678889999999887544 4689999999999
Q ss_pred CCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh-
Q psy2637 377 ELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD- 453 (502)
Q Consensus 377 ~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~- 453 (502)
.++++++| ||+..+++++|+.++|.+|++.++..... ..+.++..+++.+.||++++|..+|++|+..++++.-..
T Consensus 628 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~-~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~ 706 (806)
T 1ypw_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE 706 (806)
T ss_dssp GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCC-CcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999988876543 245567888999999999999999999999999874211
Q ss_pred hhhh---------h---cccCCCcccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q psy2637 454 QVIK---------V---DLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYG 498 (502)
Q Consensus 454 ~~~~---------v---~~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~~w~~~~g 498 (502)
..+. + .......|+.+||..|++..+|+++.+++++|+.|++.|+
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~ 763 (806)
T 1ypw_A 707 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 763 (806)
T ss_dssp --------------------CCTTTTTTSSCCCCCC---------------------
T ss_pred HhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 1100 0 0112357999999999999999999999999999988765
No 24
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.95 E-value=4e-27 Score=229.91 Aligned_cols=242 Identities=38% Similarity=0.610 Sum_probs=192.4
Q ss_pred HhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccc
Q psy2637 218 ILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAAS 296 (502)
Q Consensus 218 ~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~ 296 (502)
++...++.+|++++|++.+++.+.+.+... ..+..+..+. ..+.+++|+||||||||+++++++..++.+++.+++..
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~ 84 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 84 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH
Confidence 345678889999999999999998876542 2344444443 34567999999999999999999999999999999988
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC---hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcC
Q psy2637 297 LTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG---EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATN 373 (502)
Q Consensus 297 l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN 373 (502)
+...+.+.....+..+|+.+....|+++++||+|.+...+... ......+....++..+++.... ..++++++||
T Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~--~~~i~~a~t~ 162 (254)
T 1ixz_A 85 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATN 162 (254)
T ss_dssp HHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT--CCEEEEEEES
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC--CCEEEEEccC
Confidence 8877777777778889999887788999999999987654321 1233455667788888876543 3488999999
Q ss_pred CCCCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhh
Q psy2637 374 RPQELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELN 451 (502)
Q Consensus 374 ~~~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~ 451 (502)
.|+.++++++| ||+..++++.|+.++|.+|++.++..... ..+.++..++..+.|++++||..+++.|...+.++.
T Consensus 163 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~- 240 (254)
T 1ixz_A 163 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG- 240 (254)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCB-CTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-
T ss_pred CchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCC-CcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 99999999998 89999999999999999999988765432 234568899999999999999999999998777653
Q ss_pred hhhhhhhcccCCCcccHHHHHHHH
Q psy2637 452 ADQVIKVDLKSVRNISYRDFLESL 475 (502)
Q Consensus 452 ~~~~~~v~~~~~~~It~~d~~~al 475 (502)
...|+.+||.+|+
T Consensus 241 -----------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 241 -----------RRKITMKDLEEAA 253 (254)
T ss_dssp -----------CSSBCHHHHHHHT
T ss_pred -----------CCCcCHHHHHHHh
Confidence 3469999998875
No 25
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.95 E-value=6.8e-30 Score=265.21 Aligned_cols=298 Identities=20% Similarity=0.260 Sum_probs=217.7
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhhhccCChhHHHHHHHHHHHH
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVNCYYGSGEKWERAQRLQEKM 190 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~~~~~~~~~~~~~~~~~~~~ 190 (502)
.||+++|+++++++++..+.+++++.|++ ++.+.++++++.|+ +|+.||++.+.. .....++.+.+.
T Consensus 53 ~mp~~dG~ell~~lr~~~~~~pvIvlT~~-------~~~~~~~~a~~~Ga~dyl~KP~~~~~L---~~~i~~~l~~~~-- 120 (387)
T 1ny5_A 53 LLPDVNGLEILKWIKERSPETEVIVITGH-------GTIKTAVEAMKMGAYDFLTKPCMLEEI---ELTINKAIEHRK-- 120 (387)
T ss_dssp BCSSSBHHHHHHHHHHHCTTSEEEEEEET-------TCHHHHHHHHTTTCCEEEEESCCHHHH---HHHHHHHHHHHH--
T ss_pred CCCCCCHHHHHHHHHhhCCCCcEEEEeCC-------CCHHHHHHHHhcCceEEecCCCCHHHH---HHHHHHHHHHHH--
Confidence 48999999999999999999999999999 89999999999999 999999987432 111111111100
Q ss_pred HHHHHHHHHHhhhhhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCC
Q psy2637 191 KNNLKMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPP 270 (502)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~Gpp 270 (502)
...+. ..+.. .. .. .+..++|.+..++.+.+.+ ..++....+|||+|++
T Consensus 121 -----l~~~~-------~~l~~----~~-~~----~~~~~ig~s~~m~~l~~~i----------~~~a~~~~~vli~Ge~ 169 (387)
T 1ny5_A 121 -----LRKEN-------ELLRR----EK-DL----KEEEYVFESPKMKEILEKI----------KKISCAECPVLITGES 169 (387)
T ss_dssp -----HHHHH-------HHHHH----HH-HT----TCCCCCCCSHHHHHHHHHH----------HHHTTCCSCEEEECST
T ss_pred -----HHHHH-------HHhhh----hh-hh----cchhhhhccHHhhHHHHHH----------HHhcCCCCCeEEecCC
Confidence 00000 00000 00 00 1356889999999998887 4455667889999999
Q ss_pred CCcHHHHHHHHHHHc---cCceEEeeccchhhh-------------hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhc
Q psy2637 271 GNGKTMLARAVATAC---NATFFSISAASLTSK-------------YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLS 334 (502)
Q Consensus 271 GtGKT~lAraia~~~---~~~fv~i~~s~l~~~-------------~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~ 334 (502)
||||+++|+++|..+ +.||+.+||+.+... |.|.... ..++|+.|.+ |+||||||+.|..
T Consensus 170 GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l~~ 245 (387)
T 1ny5_A 170 GVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELADG---GTLFLDEIGELSL 245 (387)
T ss_dssp TSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHTTT---SEEEEESGGGCCH
T ss_pred CcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeCCC---cEEEEcChhhCCH
Confidence 999999999999987 479999999987643 2222221 2466777766 8999999998832
Q ss_pred ccccChhHHHHHHHHHHHHHhc-------cCCCCCCCcEEEEEEcCCC-------CCCcHHHHccccceeeecCCCHHHH
Q psy2637 335 ERKEGEHEASRRLKTEFLLEFD-------GLHSNSEHRLLVMGATNRP-------QELDEAVLRRFSKRIYVTLPDSKTR 400 (502)
Q Consensus 335 ~~~~~~~~~~~~~~~~ll~~l~-------g~~~~~~~~v~vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~~~er 400 (502)
..+..|+..++ |.......+++||+|||.. ..+.+.++.|++ ++.+..|++++|
T Consensus 246 -----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~-~~~i~lPpLreR 313 (387)
T 1ny5_A 246 -----------EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLG-VIEIEIPPLRER 313 (387)
T ss_dssp -----------HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHT-TEEEECCCGGGC
T ss_pred -----------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhc-CCeecCCcchhc
Confidence 34455555554 2222233578999999974 355677777886 889999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHh----cCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHH
Q psy2637 401 KSLLEKLLNKHGNPLSQLELDAVAKL----TEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLK 476 (502)
Q Consensus 401 ~~il~~~l~~~~~~l~~~~l~~la~~----t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~ 476 (502)
.+.+..++..+ +..++.. ..+++++.+..|..+.|++|+|+++|.+++++..+.+..|+.+|++..++
T Consensus 314 ~~Di~~l~~~~--------l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~~~i~~~~l~~~~~ 385 (387)
T 1ny5_A 314 KEDIIPLANHF--------LKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLVN 385 (387)
T ss_dssp HHHHHHHHHHH--------HHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCSSEECHHHHHHHC-
T ss_pred cccHHHHHHHH--------HHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCCCcCcHHHCcHhhh
Confidence 98887766543 2333332 34689999999999999999999999999999988888999999986543
No 26
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=1.4e-27 Score=254.02 Aligned_cols=243 Identities=38% Similarity=0.602 Sum_probs=200.6
Q ss_pred CCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhh
Q psy2637 223 SPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKY 301 (502)
Q Consensus 223 ~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~ 301 (502)
++++|++++|++.+++.+.+.+... ..+..+..++ ..+.++||+||||||||++|+++|..++.+|+.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l-~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHH-HCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHh-hchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 7789999999999999999887542 3344455553 4567899999999999999999999999999999999998888
Q ss_pred hhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC---hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCC
Q psy2637 302 VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG---EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQEL 378 (502)
Q Consensus 302 ~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l 378 (502)
.+.....+..+|+.+....|+++||||||.+...+... ......+.++.++..+++.... ..+++|++||.|+.+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~--~~viviAatn~p~~L 182 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNRPDIL 182 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS--CCCEEEECCSCGGGS
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC--ccEEEEEecCChhhc
Confidence 88888888899998887788999999999997665421 2233456677888888877543 358999999999999
Q ss_pred cHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhh
Q psy2637 379 DEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVI 456 (502)
Q Consensus 379 ~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~ 456 (502)
+++++| ||+..+.|++|+.++|.+|++.++..... ..+.++..++..+.|++++||.+++++|...+.++.
T Consensus 183 D~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l-~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~------ 255 (499)
T 2dhr_A 183 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG------ 255 (499)
T ss_dssp CTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCC-CCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC------
T ss_pred CcccccccccceEEecCCCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 999998 89999999999999999999887764322 235568899999999999999999999988766542
Q ss_pred hhcccCCCcccHHHHHHHHHhhcCC
Q psy2637 457 KVDLKSVRNISYRDFLESLKRIRRS 481 (502)
Q Consensus 457 ~v~~~~~~~It~~d~~~al~~~~~s 481 (502)
...|+.+||..|+..+.+.
T Consensus 256 ------~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 256 ------RRKITMKDLEEAADRVMML 274 (499)
T ss_dssp ------CSSCCSHHHHHHHHHHTTC
T ss_pred ------CCccCHHHHHHHHHHHhcc
Confidence 3579999999999987654
No 27
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.95 E-value=1.1e-29 Score=249.73 Aligned_cols=249 Identities=36% Similarity=0.588 Sum_probs=194.8
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
..++..|++++|++.+++.+.+.+.. ...++.+..++ ..+.++||+||||||||++|+++|+.++.+|+.++|+.+..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 45678999999999999999988754 34455555443 45678999999999999999999999999999999999988
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccCh----hHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 300 KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGE----HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~----~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
.+.+.....+..+|+.+....|++|||||+|.+...+..+. .....+.+..++..+++.... ..+++||+|||.+
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~ttn~~ 161 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE-NAPVIVLAATNRP 161 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS-CSCCEEEECBSCC
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC-CCCEEEEEecCCc
Confidence 87777666667888988888899999999999976542211 011122345566666654332 3458999999999
Q ss_pred CCCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 376 QELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 376 ~~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
+.+++++.| ||+..+.+++|+.++|.++++.++...... .+.+++.++..+.|+++++|..+++.|...+.++.
T Consensus 162 ~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~--- 237 (268)
T 2r62_A 162 EILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN--- 237 (268)
T ss_dssp TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC---
T ss_pred hhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc---
Confidence 999999999 999899999999999999999888765432 34557888999999999999999999987665432
Q ss_pred hhhhhcccCCCcccHHHHHHHHHhhcCCCCH
Q psy2637 454 QVIKVDLKSVRNISYRDFLESLKRIRRSVSP 484 (502)
Q Consensus 454 ~~~~v~~~~~~~It~~d~~~al~~~~~s~~~ 484 (502)
...|+.+|+..++..+.++...
T Consensus 238 ---------~~~i~~~~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 238 ---------QKEVRQQHLKEAVERGIAGLEK 259 (268)
T ss_dssp ---------CCSCCHHHHHTSCTTCCCCCC-
T ss_pred ---------cCCcCHHHHHHHHHHHhhcchh
Confidence 3579999999999988876543
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.94 E-value=7.5e-26 Score=224.16 Aligned_cols=239 Identities=38% Similarity=0.608 Sum_probs=189.9
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
..++.+|++++|++.+++.+.+.+... ..+..+..+. ..+.+++|+||||||||+++++++..++.+++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 347789999999999999998876543 2334444443 34567999999999999999999999999999999998887
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccC---hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC
Q psy2637 300 KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG---EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ 376 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~---~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~ 376 (502)
.+.+.....+..+|+.+....|+++|+||+|.+...+... ......+....++..+++.... ..++++++||.|+
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~--~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNRPD 189 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT--CCEEEEEEESCTT
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC--CCEEEEEecCCch
Confidence 7777777778889999887889999999999987554321 1223345566777788776443 3488999999999
Q ss_pred CCcHHHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhh
Q psy2637 377 ELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQ 454 (502)
Q Consensus 377 ~l~~~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~ 454 (502)
.++++++| ||+..+++++|+.++|.+|++.++..... ..+.++..++..+.|++++||..+++.|...+.++.
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~---- 264 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG---- 264 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT----
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC-CcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 99999998 89999999999999999999988765422 234568899999999999999999999988776642
Q ss_pred hhhhcccCCCcccHHHHHHHH
Q psy2637 455 VIKVDLKSVRNISYRDFLESL 475 (502)
Q Consensus 455 ~~~v~~~~~~~It~~d~~~al 475 (502)
...|+.+||.+|+
T Consensus 265 --------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 265 --------RRKITMKDLEEAA 277 (278)
T ss_dssp --------CCSBCHHHHHHHT
T ss_pred --------CCCcCHHHHHHHh
Confidence 3469999998875
No 29
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.94 E-value=1.6e-28 Score=253.07 Aligned_cols=281 Identities=21% Similarity=0.276 Sum_probs=206.6
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhhhccCChhHHHHHHHHHHHH
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVNCYYGSGEKWERAQRLQEKM 190 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~~~~~~~~~~~~~~~~~~~~ 190 (502)
.||+++|+++++++++..|..+++++|++ ++.+.++++++.|+ +|+.||++.+. +...+
T Consensus 53 ~mP~~dG~ell~~lr~~~~~~pvI~lT~~-------~~~~~~~~a~~~Ga~~yl~KP~~~~~-------------L~~~i 112 (368)
T 3dzd_A 53 WMPDGDGVNFIDFIKENSPDSVVIVITGH-------GSVDTAVKAIKKGAYEFLEKPFSVER-------------FLLTI 112 (368)
T ss_dssp EETTEETTTHHHHHHHHCTTCEEEEEECS-------SCCHHHHHHHHHTCCEEEESSCCHHH-------------HHHHH
T ss_pred CCCCCCHHHHHHHHHhhCCCCeEEEEeCC-------CCHHHHHHHHhcCcceEEeCCCCHHH-------------HHHHH
Confidence 49999999999999999999999999999 89999999999999 99999998742 11111
Q ss_pred HHHHHHHHHHhhhhhhchHHHHHHHHHHhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCC
Q psy2637 191 KNNLKMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPP 270 (502)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~Gpp 270 (502)
..... ..... ........++|.+..+..+.+.+ ..++....++|++|++
T Consensus 113 ~~~l~----~~~~~-----------------~~~~~~~~~ig~s~~~~~~~~~~----------~~~a~~~~~vli~Ges 161 (368)
T 3dzd_A 113 KHAFE----EYSKK-----------------APPQEEIEFVGEHPKILEIKRLI----------PKIAKSKAPVLITGES 161 (368)
T ss_dssp HHHHH----HHSCC-----------------CCCCCCCCCCCCSHHHHHHHHHH----------HHHHTSCSCEEEECCT
T ss_pred HHHHH----Hhhhh-----------------hcccccccccccchHHHHHHhhh----------hhhhccchhheEEeCC
Confidence 11111 10000 00001246889999888888776 3334456789999999
Q ss_pred CCcHHHHHHHHHHHccC--ceEEeeccchhhhh-------------hhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcc
Q psy2637 271 GNGKTMLARAVATACNA--TFFSISAASLTSKY-------------VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSE 335 (502)
Q Consensus 271 GtGKT~lAraia~~~~~--~fv~i~~s~l~~~~-------------~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~ 335 (502)
||||+++|+++|..++. +|+.+||+.+.... .|.... ..+.|+.|.+ ++||||||+.|.
T Consensus 162 GtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l~-- 235 (368)
T 3dzd_A 162 GTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTR-KKGKLELADQ---GTLFLDEVGELD-- 235 (368)
T ss_dssp TSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCC-EECHHHHTTT---SEEEEETGGGSC--
T ss_pred CchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccc-cCChHhhcCC---CeEEecChhhCC--
Confidence 99999999999998843 39999999876432 222111 2356777765 899999999883
Q ss_pred cccChhHHHHHHHHHHHHHhcc-------CCCCCCCcEEEEEEcCCC-------CCCcHHHHccccceeeecCCCHHHHH
Q psy2637 336 RKEGEHEASRRLKTEFLLEFDG-------LHSNSEHRLLVMGATNRP-------QELDEAVLRRFSKRIYVTLPDSKTRK 401 (502)
Q Consensus 336 ~~~~~~~~~~~~~~~ll~~l~g-------~~~~~~~~v~vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~~~er~ 401 (502)
...+..|+..++. .......++++|+|||.. ..+.+.++.|++ ++.+.+|++++|.
T Consensus 236 ---------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~-~~~i~lPpLreR~ 305 (368)
T 3dzd_A 236 ---------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLS-VFQIYLPPLRERG 305 (368)
T ss_dssp ---------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHT-SEEEECCCGGGST
T ss_pred ---------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhC-CeEEeCCChhhch
Confidence 2345566666542 222223578999999974 245567888996 8999999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHH----hcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCccc
Q psy2637 402 SLLEKLLNKHGNPLSQLELDAVAK----LTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNIS 467 (502)
Q Consensus 402 ~il~~~l~~~~~~l~~~~l~~la~----~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It 467 (502)
+.+..++..+ +..++. ...+++++.+..|..+.|++|+||+.|.+++++..+.+..|+
T Consensus 306 ~Di~~l~~~~--------l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~~~~~i~ 367 (368)
T 3dzd_A 306 KDVILLAEYF--------LKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILCEGEVIK 367 (368)
T ss_dssp THHHHHHHHH--------HHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTCCSSBCC
T ss_pred hhHHHHHHHH--------HHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCCCccC
Confidence 8887766543 233333 234799999999999999999999999999998888776665
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=5e-25 Score=248.06 Aligned_cols=257 Identities=35% Similarity=0.571 Sum_probs=219.8
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~ 300 (502)
.+.++|++|+|++.+++.+.+++..+..+++++..++ .++.++||+||||||||++|+++|..++.+++.++|.++.+.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 4567999999999999999999999999999998875 667899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcH
Q psy2637 301 YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDE 380 (502)
Q Consensus 301 ~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~ 380 (502)
+.+.....+..+|+.+....|+++||||+|.+.+.+.....+...+++..++..+++.... .++++|+|||+++.+++
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDP 355 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT--SCCEEEEECSCTTTSCT
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc--ccEEEecccCCchhcCH
Confidence 9999999999999999998999999999999998876666667778888899989887654 46899999999999999
Q ss_pred HHHc--cccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhh-
Q psy2637 381 AVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIK- 457 (502)
Q Consensus 381 ~l~r--Rf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~- 457 (502)
++.+ ||+..+.++.|+.++|.++++.++..... ..+.++..++..+.|++++++..++..++..++++........
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~ 434 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCC-CTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCC-cccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh
Confidence 9998 99989999999999999999988776543 3455788999999999999999999999999888653321110
Q ss_pred ----hcccCCCcccHHHHHHHHHhhcCC
Q psy2637 458 ----VDLKSVRNISYRDFLESLKRIRRS 481 (502)
Q Consensus 458 ----v~~~~~~~It~~d~~~al~~~~~s 481 (502)
........++.+|+..++....++
T Consensus 435 ~~~~~~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 435 ETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp HHCCHHHHTTCCCCTTHHHHHHHHSCCC
T ss_pred hccchhhhhhhhhhhhhhhccccccCch
Confidence 011234568889999999887765
No 31
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.89 E-value=3.3e-23 Score=206.94 Aligned_cols=172 Identities=18% Similarity=0.267 Sum_probs=126.9
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHH----HhcCCeEEEEcCCcchhc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMA----RELQPSIIFIDEVDSVLS 334 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a----~~~~p~iLfLDEId~L~~ 334 (502)
.++.++||+||||||||++|+++|+.++.+|+.++|+++.+.+.|.....+..+|..+ +...|+||||||||.+.+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 4568999999999999999999999999999999999999999999998889999888 466889999999999987
Q ss_pred ccccCh--hHHHHHHHHHHHHHhccCC---------CCCCCcEEEEEEcCCCCCCcHHHHc--cccceeeecCCCHHHHH
Q psy2637 335 ERKEGE--HEASRRLKTEFLLEFDGLH---------SNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTRK 401 (502)
Q Consensus 335 ~~~~~~--~~~~~~~~~~ll~~l~g~~---------~~~~~~v~vIaaTN~~~~l~~~l~r--Rf~~~I~i~~P~~~er~ 401 (502)
...... ......++..|+..+++.. .....+++||+|||.++.++++++| ||+..+. .|+.++|.
T Consensus 114 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~ 191 (293)
T 3t15_A 114 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 191 (293)
T ss_dssp ----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHH
T ss_pred CCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHH
Confidence 543221 1133456677888876432 1123568999999999999999997 8976554 68999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHH
Q psy2637 402 SLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTN 437 (502)
Q Consensus 402 ~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~ 437 (502)
+|++.++...+. + .+.++..+.||++++|..
T Consensus 192 ~Il~~~~~~~~~--~---~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 192 GVCTGIFRTDNV--P---AEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHGGGCC--C---HHHHHHHHHHSCSCCHHH
T ss_pred HHHHHhccCCCC--C---HHHHHHHhCCCCcccHHH
Confidence 999988875432 2 566777778888877753
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=3.5e-22 Score=199.94 Aligned_cols=235 Identities=17% Similarity=0.225 Sum_probs=171.6
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhc--C--CCCCcceEEecCCCCcHHHHHHHHHHHc-------cCceEEeeccch
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTG--L--RTPSRGLLLFGPPGNGKTMLARAVATAC-------NATFFSISAASL 297 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~--~--~~~~~~vLL~GppGtGKT~lAraia~~~-------~~~fv~i~~s~l 297 (502)
+++|++.+++.+.+.+..... +..... + ..++.++||+||||||||++|+++|+.+ ..+++.++++.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 699999999999988754421 222111 1 2455689999999999999999999988 348999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC-
Q psy2637 298 TSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ- 376 (502)
Q Consensus 298 ~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~- 376 (502)
.+.+.|.....+..+|..+. +++|||||+|.+...+.. .......+..|+..++.. ..++++|++||.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~~ 181 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN----RDDLVVILAGYADRM 181 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC----TTTCEEEEEECHHHH
T ss_pred hhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC----CCCEEEEEeCChHHH
Confidence 98888888877788887774 489999999999755432 122345566677777642 34578899998653
Q ss_pred ----CCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhh
Q psy2637 377 ----ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLT-------EGYSGSDLTNLAKDAALG 445 (502)
Q Consensus 377 ----~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t-------~g~s~~dL~~L~~~a~~~ 445 (502)
.+++++++||+..+.|++|+.+++.+++..++...+..+++..+..++... ..-+.+++.++++.+...
T Consensus 182 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 182 ENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLR 261 (309)
T ss_dssp HHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHH
Confidence 356899999988999999999999999999999988888888888887763 223478899999988877
Q ss_pred hHHhhhhhhhhhhcccCCCcccHHHHHH
Q psy2637 446 PIRELNADQVIKVDLKSVRNISYRDFLE 473 (502)
Q Consensus 446 airel~~~~~~~v~~~~~~~It~~d~~~ 473 (502)
+..++.......+.......|+.+|+..
T Consensus 262 ~~~r~~~~~~~~~~~~~l~~i~~~d~~~ 289 (309)
T 3syl_A 262 QANRLFTASSGPLDARALSTIAEEDIRA 289 (309)
T ss_dssp HHHHHHHC---CEEHHHHHEECHHHHHT
T ss_pred HHHHHHhccCCCCCHHHHhhccHHHhcc
Confidence 6665532111112222234456666654
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.86 E-value=2.7e-20 Score=188.87 Aligned_cols=221 Identities=18% Similarity=0.200 Sum_probs=160.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
....|.+|++++|++.+++.+..++... ..-+.+..++||+||||||||++|+++|+.++.+|+.++|..+..
T Consensus 21 ~~~~p~~~~~iiG~~~~~~~l~~~l~~~-------~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~ 93 (338)
T 3pfi_A 21 TSLRPSNFDGYIGQESIKKNLNVFIAAA-------KKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK 93 (338)
T ss_dssp --CCCCSGGGCCSCHHHHHHHHHHHHHH-------HHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS
T ss_pred hccCCCCHHHhCChHHHHHHHHHHHHHH-------HhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc
Confidence 4567779999999999999999888432 111345678999999999999999999999999999999977642
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCC--------------CCCCc
Q psy2637 300 KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHS--------------NSEHR 365 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~--------------~~~~~ 365 (502)
. ..+...+.. ...+++|||||||.+.. ..+..++..++.... ....+
T Consensus 94 ~------~~~~~~~~~--~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 94 S------GDLAAILTN--LSEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp H------HHHHHHHHT--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred h------hHHHHHHHh--ccCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 1 112222221 24568999999998842 233444554443210 00124
Q ss_pred EEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Q psy2637 366 LLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALG 445 (502)
Q Consensus 366 v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~ 445 (502)
+++|++||....+++++++||+.++.+++|+.+++.+++...+...+..+++..++.++..+.| +++.+.+++..++..
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDF 233 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHH
Confidence 8999999999999999999998899999999999999999999988877888888888886665 556777777766543
Q ss_pred hHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhc
Q psy2637 446 PIRELNADQVIKVDLKSVRNISYRDFLESLKRIR 479 (502)
Q Consensus 446 airel~~~~~~~v~~~~~~~It~~d~~~al~~~~ 479 (502)
+... ....|+.+++..++....
T Consensus 234 a~~~------------~~~~i~~~~~~~~~~~~~ 255 (338)
T 3pfi_A 234 ADVN------------DEEIITEKRANEALNSLG 255 (338)
T ss_dssp HHHT------------TCSEECHHHHHHHHHHHT
T ss_pred HHhh------------cCCccCHHHHHHHHHHhC
Confidence 3321 123566677766665543
No 34
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.86 E-value=3.4e-22 Score=200.65 Aligned_cols=214 Identities=20% Similarity=0.318 Sum_probs=158.6
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhh--
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYV-- 302 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~-- 302 (502)
++++|.+..++.+.+.+ ..+...+.+|||+||||||||++|+++|+.+ +.||+.++|+.+.....
T Consensus 2 ~~iig~s~~~~~~~~~~----------~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEI----------AMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHH----------HHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHH----------HHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 35899999999998887 3344556899999999999999999999976 67999999998764322
Q ss_pred -----------hhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC-------CCCCCC
Q psy2637 303 -----------GQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL-------HSNSEH 364 (502)
Q Consensus 303 -----------g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~-------~~~~~~ 364 (502)
|... ...+.|+.+.. ++|||||||.+.. ..+..|+..++.. ......
T Consensus 72 ~lfg~~~g~~tg~~~-~~~g~~~~a~~---g~L~LDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 72 ELFGHEKGAFTGADK-RREGRFVEADG---GTLFLDEIGDISP-----------LMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHTCCCSSCCC---C-CCCCHHHHHTT---SEEEEESCTTCCH-----------HHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HhcCccccccCchhh-hhcCHHHhcCC---CEEEEeccccCCH-----------HHHHHHHHHHhcCEeeecCCcccccC
Confidence 1111 12345666554 8999999998843 2344555555432 122235
Q ss_pred cEEEEEEcCCC-------CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh----cCCCCHH
Q psy2637 365 RLLVMGATNRP-------QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKL----TEGYSGS 433 (502)
Q Consensus 365 ~v~vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~----t~g~s~~ 433 (502)
+++||+|||.+ ..+.+.++.||+ ++.+..|++++|.+.+..++..+ +..++.. ...++++
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~--------l~~~~~~~~~~~~~~s~~ 207 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHF--------LRRFAERNRKVVKGFTPQ 207 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHH--------HHHHHHHTTCCCCCBCHH
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHH--------HHHHHHHhccCccCCCHH
Confidence 68999999985 246778888997 89999999999988776655432 2233322 2468999
Q ss_pred HHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHH
Q psy2637 434 DLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESL 475 (502)
Q Consensus 434 dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al 475 (502)
.+..|..+.|++++|++.+..++++..+....|+.+|++..+
T Consensus 208 a~~~L~~~~wpGnvReL~~~l~~~~~~~~~~~i~~~~l~~~~ 249 (304)
T 1ojl_A 208 AMDLLIHYDWPGNIRELENAIERAVVLLTGEYISERELPLAI 249 (304)
T ss_dssp HHHHHHHCCCSSHHHHHHHHHHHHHHHCCSSSBCGGGSCGGG
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHhCCCCcccHHhhhhhh
Confidence 999999999999999999999999888878889999887544
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.85 E-value=1.3e-20 Score=193.16 Aligned_cols=220 Identities=19% Similarity=0.211 Sum_probs=158.7
Q ss_pred CCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc--CceEEeeccchhhhh
Q psy2637 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN--ATFFSISAASLTSKY 301 (502)
Q Consensus 224 ~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~--~~fv~i~~s~l~~~~ 301 (502)
...|++++|++.+++.+..+.... .....++.++||+||||||||++|+++|+.++ .+|+.++|..+...+
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~~-------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEMI-------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred CcchhhccChHHHHHHHHHHHHHH-------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 334999999999988866554211 22223457899999999999999999999986 488888876643222
Q ss_pred hh-------------------------------------------------hhHHHHHHHHHHHHh---------cCCeE
Q psy2637 302 VG-------------------------------------------------QGEKLVRALFAMARE---------LQPSI 323 (502)
Q Consensus 302 ~g-------------------------------------------------~~~~~~~~lf~~a~~---------~~p~i 323 (502)
.+ .....+...+..+.. ..|+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 11 112223333433321 12679
Q ss_pred EEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEc-----------CCCCCCcHHHHccccceeee
Q psy2637 324 IFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGAT-----------NRPQELDEAVLRRFSKRIYV 392 (502)
Q Consensus 324 LfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaT-----------N~~~~l~~~l~rRf~~~I~i 392 (502)
|||||+|.+.. ..++.++..++. ...+++++++. |.+..+++++++||. .+.|
T Consensus 193 l~IDEi~~l~~-----------~~~~~L~~~le~----~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~-~i~~ 256 (368)
T 3uk6_A 193 LFIDEVHMLDI-----------ESFSFLNRALES----DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL-IVST 256 (368)
T ss_dssp EEEESGGGSBH-----------HHHHHHHHHTTC----TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEE-EEEE
T ss_pred EEEhhccccCh-----------HHHHHHHHHhhC----cCCCeeeeecccceeeeeccCCCCcccCCHHHHhhcc-EEEe
Confidence 99999998832 234445555542 22345555554 346789999999997 6899
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHH
Q psy2637 393 TLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFL 472 (502)
Q Consensus 393 ~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~ 472 (502)
++|+.+++.++++..+...+..+++..++.++..+.+.+++++..+++.|...+..+. ...|+.+|+.
T Consensus 257 ~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~------------~~~It~~~v~ 324 (368)
T 3uk6_A 257 TPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK------------GTEVQVDDIK 324 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT------------CSSBCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC------------CCCCCHHHHH
Confidence 9999999999999999988888999999999999985688888999998887765542 4679999999
Q ss_pred HHHHhh
Q psy2637 473 ESLKRI 478 (502)
Q Consensus 473 ~al~~~ 478 (502)
.++..+
T Consensus 325 ~a~~~~ 330 (368)
T 3uk6_A 325 RVYSLF 330 (368)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 999874
No 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.85 E-value=4.8e-20 Score=185.53 Aligned_cols=219 Identities=21% Similarity=0.258 Sum_probs=160.2
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~ 300 (502)
...+.+|++++|++.+++.+..++... .....++.++||+||||||||++|+++|+.++.+|+.++|+.+...
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~-------~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 77 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAA-------KARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHH-------HHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHH-------HccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh
Confidence 456778999999999999998887321 1112345789999999999999999999999999999998776431
Q ss_pred hhhhhHHHHHHHHHHHHh--cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCC-------CC-------CCC
Q psy2637 301 YVGQGEKLVRALFAMARE--LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLH-------SN-------SEH 364 (502)
Q Consensus 301 ~~g~~~~~~~~lf~~a~~--~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~-------~~-------~~~ 364 (502)
..++..... ..+++|||||+|.+... .+..++..++... .. ...
T Consensus 78 ---------~~l~~~l~~~~~~~~~l~lDEi~~l~~~-----------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 78 ---------GDLAAILANSLEEGDILFIDEIHRLSRQ-----------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp ---------HHHHHHHTTTCCTTCEEEETTTTSCCHH-----------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred ---------HHHHHHHHHhccCCCEEEEECCcccccc-----------hHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 122222222 45689999999988422 2233333333211 00 113
Q ss_pred cEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy2637 365 RLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAAL 444 (502)
Q Consensus 365 ~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~ 444 (502)
++++|++||.+..+++.+++||+.++.+++|+.+++.+++..++...+..+++..++.++..+.| .++.+.++++.++.
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRD 216 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 57899999999999999999997799999999999999999999888888899999999999876 45677777777664
Q ss_pred hhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhc
Q psy2637 445 GPIRELNADQVIKVDLKSVRNISYRDFLESLKRIR 479 (502)
Q Consensus 445 ~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~ 479 (502)
.+... ....|+.+++..++....
T Consensus 217 ~a~~~------------~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 217 FAQVA------------GEEVITRERALEALAALG 239 (324)
T ss_dssp TSTTT------------SCSCCCHHHHHHHHHHHT
T ss_pred HHHHh------------cCCCCCHHHHHHHHHHhc
Confidence 43211 234577777776665543
No 37
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.83 E-value=1.1e-19 Score=192.33 Aligned_cols=232 Identities=20% Similarity=0.203 Sum_probs=171.1
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc--CceEEeeccchhh
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN--ATFFSISAASLTS 299 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~--~~fv~i~~s~l~~ 299 (502)
.+...|++++|++.+++.+..++... ..-..++.++||+||||||||++|+++|+.++ .+|+.++++++.+
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~-------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI-------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH-------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 34556899999999999988776321 22224568999999999999999999999998 9999999999999
Q ss_pred hhhhhhHHHHHHHHHHH---HhcCCeEEEEcCCcchhcccccChhH---------------------------H------
Q psy2637 300 KYVGQGEKLVRALFAMA---RELQPSIIFIDEVDSVLSERKEGEHE---------------------------A------ 343 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a---~~~~p~iLfLDEId~L~~~~~~~~~~---------------------------~------ 343 (502)
.+.|..+. +...|..+ +...|++|||||+|.+++.+...... .
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999887 78999998 77789999999999998654322000 0
Q ss_pred --------------------------------------------------------------------------------
Q psy2637 344 -------------------------------------------------------------------------------- 343 (502)
Q Consensus 344 -------------------------------------------------------------------------------- 343 (502)
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~l~~~ 262 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQ 262 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC---------------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHhh
Confidence
Q ss_pred ---------------------------------------------HHHHHHHHHHHhccCCCCCCCcEEEEEE-------
Q psy2637 344 ---------------------------------------------SRRLKTEFLLEFDGLHSNSEHRLLVMGA------- 371 (502)
Q Consensus 344 ---------------------------------------------~~~~~~~ll~~l~g~~~~~~~~v~vIaa------- 371 (502)
....++.|+..+ +.++.+++|+++
T Consensus 263 i~~p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~l----Ee~~~~~~il~tn~~~~~i 338 (456)
T 2c9o_A 263 LMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRAL----ESSIAPIVIFASNRGNCVI 338 (456)
T ss_dssp --------------CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHHT----TSTTCCEEEEEECCSEEEC
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHHh----hccCCCEEEEecCCccccc
Confidence 000111122222 223334544455
Q ss_pred --cC---CCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHhh
Q psy2637 372 --TN---RPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLT-EGYSGSDLTNLAKDAALG 445 (502)
Q Consensus 372 --TN---~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t-~g~s~~dL~~L~~~a~~~ 445 (502)
++ .+..+++.+++||. .+.|++|+.++..++++..+...+..+++..+..++..+ .| +++....+++.|...
T Consensus 339 ~~~~~~~~~~~l~~~i~sR~~-~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~ 416 (456)
T 2c9o_A 339 RGTEDITSPHGIPLDLLDRVM-IIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLL 416 (456)
T ss_dssp BTTSSCEEETTCCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHH
T ss_pred cccccccccccCChhHHhhcc-eeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 33 15789999999997 579999999999999999998888888999999999888 66 566666666666554
Q ss_pred hHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhc
Q psy2637 446 PIRELNADQVIKVDLKSVRNISYRDFLESLKRIR 479 (502)
Q Consensus 446 airel~~~~~~~v~~~~~~~It~~d~~~al~~~~ 479 (502)
+..+. ...|+.+|+..++..+-
T Consensus 417 A~~~~------------~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 417 AKING------------KDSIEKEHVEEISELFY 438 (456)
T ss_dssp HHHTT------------CSSBCHHHHHHHHHHSC
T ss_pred HhhcC------------CCccCHHHHHHHHHHhc
Confidence 44332 36799999999987763
No 38
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.83 E-value=4.5e-20 Score=184.10 Aligned_cols=247 Identities=23% Similarity=0.330 Sum_probs=157.4
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcC--CCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh-hhhhh
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGL--RTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS-KYVGQ 304 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~--~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~-~~~g~ 304 (502)
++++|++.+++.+...+..+.....+.... +..+.++||+||||||||++|+++|+.++.+++.++|+.+.. .+.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 358999999999998875421111111111 234679999999999999999999999999999999998875 45543
Q ss_pred h-HHHHHHHHHHH-----HhcCCeEEEEcCCcchhcccccChhH-HHHHHHHHHHHHhccCCC------CCCCcEEEEEE
Q psy2637 305 G-EKLVRALFAMA-----RELQPSIIFIDEVDSVLSERKEGEHE-ASRRLKTEFLLEFDGLHS------NSEHRLLVMGA 371 (502)
Q Consensus 305 ~-~~~~~~lf~~a-----~~~~p~iLfLDEId~L~~~~~~~~~~-~~~~~~~~ll~~l~g~~~------~~~~~v~vIaa 371 (502)
. ...+..++..+ ....++||||||+|.+.+........ ....+++.|+..+++... ....++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 2 23344554422 11235899999999997765332222 223346677777765311 11235788888
Q ss_pred c----CCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHh
Q psy2637 372 T----NRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTE---GYSGSDLTNLAKDAAL 444 (502)
Q Consensus 372 T----N~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~---g~s~~dL~~L~~~a~~ 444 (502)
+ +.+..+++++.+||+..+.|++|+.+++.++++..+.. +.. .+........ .++++.+..|+.++|.
T Consensus 175 ~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~----~~~-~~~~~~~~~~~~~~~~~~a~~~l~~~~~~ 249 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHAS----LTE-QYKALMATEGVNIAFTTDAVKKIAEAAFR 249 (310)
T ss_dssp ECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTC----HHH-HHHHHHHHTTCEEEECHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHH----HHH-HHHHHHHhcCCeeccCHHHHHHHHHHhhh
Confidence 4 56778999999999877999999999999999732110 000 0111111111 2556666666666664
Q ss_pred -------hhHHhhhhhhhhhhc-----c--cC--CCcccHHHHHHHHHhhc
Q psy2637 445 -------GPIRELNADQVIKVD-----L--KS--VRNISYRDFLESLKRIR 479 (502)
Q Consensus 445 -------~airel~~~~~~~v~-----~--~~--~~~It~~d~~~al~~~~ 479 (502)
++.|++.+..++.+. . .. ...|+.+|+..++....
T Consensus 250 ~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 250 VNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred hcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 556665555444330 1 11 12599999999887653
No 39
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.83 E-value=9.3e-21 Score=185.87 Aligned_cols=215 Identities=18% Similarity=0.221 Sum_probs=146.0
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc---CceEEeeccchhhhhh
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN---ATFFSISAASLTSKYV 302 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~---~~fv~i~~s~l~~~~~ 302 (502)
+|++++|++..++.+.+.+. .....+.++||+||||||||++|+++|+.+. .+|+.++|+.+.....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~----------~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~ 73 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVS----------HLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (265)
T ss_dssp ------CCCHHHHHHHHHHH----------HHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHH
T ss_pred ccccceeCCHHHHHHHHHHH----------HHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHH
Confidence 68899999999999887763 2233457899999999999999999999884 6899999998754321
Q ss_pred -----hhhHHH-------HHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC-------CCCCC
Q psy2637 303 -----GQGEKL-------VRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL-------HSNSE 363 (502)
Q Consensus 303 -----g~~~~~-------~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~-------~~~~~ 363 (502)
|..... ..+.++.+ .+++|||||||.+... .+..|+..++.. .....
T Consensus 74 ~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~~~ 139 (265)
T 2bjv_A 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM-----------VQEKLLRVIEYGELERVGGSQPLQ 139 (265)
T ss_dssp HHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH-----------HHHHHHHHHHHCEECCCCC--CEE
T ss_pred HHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH-----------HHHHHHHHHHhCCeecCCCccccc
Confidence 111000 01223333 3489999999988432 334455544421 11112
Q ss_pred CcEEEEEEcCCC-------CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhc-----CCCC
Q psy2637 364 HRLLVMGATNRP-------QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLT-----EGYS 431 (502)
Q Consensus 364 ~~v~vIaaTN~~-------~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t-----~g~s 431 (502)
.++++|+|||.+ ..+.+.+++||+ .+.+..|+.++|.+.+..++..+ +..++... ..++
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~-~~~i~lp~L~~R~~di~~l~~~~--------l~~~~~~~~~~~~~~~~ 210 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLDALA-FDVVQLPPLRERESDIMLMAEYF--------AIQMCREIKLPLFPGFT 210 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHC-SEEEECCCGGGCHHHHHHHHHHH--------HHHHHHHTTCSSCCCBC
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHHhhc-CcEEeCCChhhhhHHHHHHHHHH--------HHHHHHHhCCCcccCcC
Confidence 458899999985 247789999996 67899999988877666554322 22222221 2688
Q ss_pred HHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHH
Q psy2637 432 GSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLE 473 (502)
Q Consensus 432 ~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~ 473 (502)
++.+..|..+.|++++|++.+..++++.......|+.+|++.
T Consensus 211 ~~a~~~L~~~~~~gn~reL~~~l~~~~~~~~~~~i~~~~l~~ 252 (265)
T 2bjv_A 211 ERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIII 252 (265)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSSCBCCCCS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCcCcHHHcch
Confidence 999999999999999999999988887777677888888753
No 40
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.80 E-value=1.1e-19 Score=186.66 Aligned_cols=178 Identities=22% Similarity=0.359 Sum_probs=125.1
Q ss_pred cccChHHHHHHHHHHHhCcCCChhh---hhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh-hhhh
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPEL---FTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK-YVGQ 304 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l---~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~-~~g~ 304 (502)
.++|++.+++.+...+......... ......++.++||+||||||||++|+++|+.++.+|+.++|+.+... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 4799999999999887422111110 01223467899999999999999999999999999999999988753 6666
Q ss_pred h-HHHHHHHHHHH----HhcCCeEEEEcCCcchhcccccCh---hHHHHHHHHHHHHHhccCCC---------C------
Q psy2637 305 G-EKLVRALFAMA----RELQPSIIFIDEVDSVLSERKEGE---HEASRRLKTEFLLEFDGLHS---------N------ 361 (502)
Q Consensus 305 ~-~~~~~~lf~~a----~~~~p~iLfLDEId~L~~~~~~~~---~~~~~~~~~~ll~~l~g~~~---------~------ 361 (502)
. ...+..++..+ ....++||||||||.+.+.+.... .....++++.|+..+++... .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 4 45556666554 233458999999999987654322 22234478888888884311 0
Q ss_pred --CCCcEEEEEEcCCC----------CC-----------------------------------CcHHHHccccceeeecC
Q psy2637 362 --SEHRLLVMGATNRP----------QE-----------------------------------LDEAVLRRFSKRIYVTL 394 (502)
Q Consensus 362 --~~~~v~vIaaTN~~----------~~-----------------------------------l~~~l~rRf~~~I~i~~ 394 (502)
...++++|+++|.. .. +.+++++||+.++.+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 11234555555532 11 68899999998888999
Q ss_pred CCHHHHHHHHHH
Q psy2637 395 PDSKTRKSLLEK 406 (502)
Q Consensus 395 P~~~er~~il~~ 406 (502)
|+.+++.+|+..
T Consensus 256 l~~~~~~~I~~~ 267 (363)
T 3hws_A 256 LSEEALIQILKE 267 (363)
T ss_dssp CCHHHHHHHHHS
T ss_pred CCHHHHHHHHHH
Confidence 999999998875
No 41
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.79 E-value=1.9e-19 Score=194.39 Aligned_cols=232 Identities=18% Similarity=0.249 Sum_probs=148.4
Q ss_pred cccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh-------
Q psy2637 227 WQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS------- 299 (502)
Q Consensus 227 ~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~------- 299 (502)
+++++|++.+++.+.+.+....... ..++.+++|+||||||||++|+++|..++.+++.++|+.+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~------~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTK------SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGH 153 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSS------SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcc------cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhH
Confidence 3568999999999987764432211 125678999999999999999999999999999999987543
Q ss_pred --hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCC-----------CCCcE
Q psy2637 300 --KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSN-----------SEHRL 366 (502)
Q Consensus 300 --~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~-----------~~~~v 366 (502)
.+.|.....+...|..+....| |+||||||.+.+..... .+..++..++..... ...++
T Consensus 154 ~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~-------~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 154 RRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRGD-------PSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp ----------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred HHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhccC-------HHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 4455555555556666654554 99999999997653321 234455555422110 11468
Q ss_pred EEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhh-----cC-----CCCCHHHHHHHHHhcCC-CCHHHH
Q psy2637 367 LVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK-----HG-----NPLSQLELDAVAKLTEG-YSGSDL 435 (502)
Q Consensus 367 ~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~-----~~-----~~l~~~~l~~la~~t~g-~s~~dL 435 (502)
+||+|||.++.+++++++||. +|.|+.|+.+++.+|+..++.. .+ ..+++..+..++....+ ...++|
T Consensus 226 ~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L 304 (543)
T 3m6a_A 226 LFIATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSL 304 (543)
T ss_dssp EEEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHH
T ss_pred EEEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHH
Confidence 999999999999999999996 8999999999999999887622 22 23466667776654432 334555
Q ss_pred HHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhc
Q psy2637 436 TNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIR 479 (502)
Q Consensus 436 ~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~ 479 (502)
++.+..++..+..+... .......|+.+|+.+++....
T Consensus 305 ~~~i~~~~~~aa~~~~~------~~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 305 ERQLAAICRKAAKAIVA------EERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp HHHHHHHHHHHHHHHHT------TCCSCCEECTTTTHHHHCSCC
T ss_pred HHHHHHHHHHHHHHHHh------cCCcceecCHHHHHHHhCCcc
Confidence 55444444333222110 011234689999998886443
No 42
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.78 E-value=1e-17 Score=188.06 Aligned_cols=162 Identities=19% Similarity=0.276 Sum_probs=119.7
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCC---CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLR---TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY 301 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~---~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~ 301 (502)
.+++|++.+++.+...+.... .+.. .+..++||+||||||||++|+++|+.+ +.+|+.++|+++...+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~ 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRAR------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKH 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHT------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSC
T ss_pred CcCcChHHHHHHHHHHHHHHH------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccc
Confidence 468999999999998885331 1121 222369999999999999999999997 6899999999998776
Q ss_pred hhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCC-------CCCCCcEEEEEEcCC
Q psy2637 302 VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLH-------SNSEHRLLVMGATNR 374 (502)
Q Consensus 302 ~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~-------~~~~~~v~vIaaTN~ 374 (502)
... ...+.+..+...++||||||||.+. ..+++.|+..++... .....+++||+|||.
T Consensus 565 ~~~----~~~l~~~~~~~~~~vl~lDEi~~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 STS----GGQLTEKVRRKPYSVVLLDAIEKAH-----------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp CCC-------CHHHHHHCSSSEEEEECGGGSC-----------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ccc----cchhhHHHHhCCCeEEEEeCccccC-----------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 554 1233344455567899999999873 235566666665321 112346899999997
Q ss_pred CCC------------CcHHHHccccceeeecCCCHHHHHHHHHHHHhh
Q psy2637 375 PQE------------LDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK 410 (502)
Q Consensus 375 ~~~------------l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~ 410 (502)
+.. +.+.+++||+.++.|++|+.+++.+|+..++..
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 543 789999999889999999999999999988765
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.78 E-value=5.1e-18 Score=178.82 Aligned_cols=211 Identities=24% Similarity=0.264 Sum_probs=142.0
Q ss_pred CCCCCcccccChHHHH---HHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 222 GSPVQWQDIAGQEVAK---QALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~---~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
..|.+|++++|++.++ +.+...+... ...++||+||||||||++|++||+.++.+|+.+++....
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~ 87 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG 87 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 5677999999999998 7777777322 126899999999999999999999999999999875432
Q ss_pred hhhhhhhHHHHHHHHHHHH----hcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEc--
Q psy2637 299 SKYVGQGEKLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGAT-- 372 (502)
Q Consensus 299 ~~~~g~~~~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaT-- 372 (502)
. ..+..++..+. ...++||||||||.+... .+..|+..++. ..+++|++|
T Consensus 88 ~-------~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-----------~q~~LL~~le~------~~v~lI~att~ 143 (447)
T 3pvs_A 88 V-------KEIREAIERARQNRNAGRRTILFVDEVHRFNKS-----------QQDAFLPHIED------GTITFIGATTE 143 (447)
T ss_dssp H-------HHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT------TSCEEEEEESS
T ss_pred H-------HHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-----------HHHHHHHHHhc------CceEEEecCCC
Confidence 1 22344444433 235789999999988432 23345665653 236777766
Q ss_pred CCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhh-------cCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Q psy2637 373 NRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK-------HGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALG 445 (502)
Q Consensus 373 N~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~-------~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~ 445 (502)
|....+++++++|+. ++.+++|+.+++..++...+.. .+..+++..++.++..+.|. .+.+.++++.+...
T Consensus 144 n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd-~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 144 NPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGD-ARRALNTLEMMADM 221 (447)
T ss_dssp CGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSC-HHHHHHHHHHHHHH
T ss_pred CcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCC-HHHHHHHHHHHHHh
Confidence 444689999999996 8999999999999999999876 22335555566666555442 23333333333321
Q ss_pred hHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhcC
Q psy2637 446 PIRELNADQVIKVDLKSVRNISYRDFLESLKRIRR 480 (502)
Q Consensus 446 airel~~~~~~~v~~~~~~~It~~d~~~al~~~~~ 480 (502)
+... ......||.+++.+++.....
T Consensus 222 a~~~----------~~~~~~It~e~v~~~l~~~~~ 246 (447)
T 3pvs_A 222 AEVD----------DSGKRVLKPELLTEIAGERSA 246 (447)
T ss_dssp SCBC----------TTSCEECCHHHHHHHHTCCCC
T ss_pred cccc----------cCCCCccCHHHHHHHHhhhhh
Confidence 1100 001246899999888876544
No 44
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.78 E-value=1.9e-18 Score=170.08 Aligned_cols=232 Identities=24% Similarity=0.267 Sum_probs=143.8
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh-hhhhhhH
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS-KYVGQGE 306 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~-~~~g~~~ 306 (502)
..++|+++.++.+....... ...+......++.++||+||||||||++|+++|+.++.+|+.++|++... ...+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l--~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~ 110 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL--VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC 110 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH--HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHH--HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHH
Confidence 46788887777666531000 00000111345688999999999999999999999999999999875321 1112223
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcH-HHHcc
Q psy2637 307 KLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDE-AVLRR 385 (502)
Q Consensus 307 ~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~-~l~rR 385 (502)
..+..+|+.+....+++|||||||.+.+....+. .....++..+...+++.. ..+.+++||+|||.++.+++ .+.+|
T Consensus 111 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~l~~L~~~~~~~~-~~~~~~~ii~ttn~~~~l~~~~l~~r 188 (272)
T 1d2n_A 111 QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP-RFSNLVLQALLVLLKKAP-PQGRKLLIIGTTSRKDVLQEMEMLNA 188 (272)
T ss_dssp HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT-BCCHHHHHHHHHHTTCCC-STTCEEEEEEEESCHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh-hHHHHHHHHHHHHhcCcc-CCCCCEEEEEecCChhhcchhhhhcc
Confidence 4567788888777789999999999966543221 122334444555555432 23457899999999988877 67789
Q ss_pred ccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCc
Q psy2637 386 FSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRN 465 (502)
Q Consensus 386 f~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~ 465 (502)
|...+.+ |+.++|.++...+... ..+++..+..++..+.|++ |++++|++.+..+.+.... ..
T Consensus 189 f~~~i~~--p~l~~r~~i~~i~~~~--~~~~~~~~~~l~~~~~g~~-----------~~g~ir~l~~~l~~a~~~~--~~ 251 (272)
T 1d2n_A 189 FSTTIHV--PNIATGEQLLEALELL--GNFKDKERTTIAQQVKGKK-----------VWIGIKKLLMLIEMSLQMD--PE 251 (272)
T ss_dssp SSEEEEC--CCEEEHHHHHHHHHHH--TCSCHHHHHHHHHHHTTSE-----------EEECHHHHHHHHHHHTTSC--GG
T ss_pred cceEEcC--CCccHHHHHHHHHHhc--CCCCHHHHHHHHHHhcCCC-----------ccccHHHHHHHHHHHhhhc--hH
Confidence 9766555 5555554444433332 2357778888888888752 3334444433333333222 22
Q ss_pred ccHHHHHHHHHhhcC
Q psy2637 466 ISYRDFLESLKRIRR 480 (502)
Q Consensus 466 It~~d~~~al~~~~~ 480 (502)
...+++..++.....
T Consensus 252 ~~~~~~~~~l~~~~~ 266 (272)
T 1d2n_A 252 YRVRKFLALLREEGA 266 (272)
T ss_dssp GHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHcCC
Confidence 445666666665543
No 45
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.77 E-value=1e-17 Score=171.72 Aligned_cols=224 Identities=18% Similarity=0.163 Sum_probs=152.3
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---------cCceEEeeccc
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---------NATFFSISAAS 296 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---------~~~fv~i~~s~ 296 (502)
..++++|++..++.+..++..... ...+.+++|+||||||||++|+++++.+ +.+++.++|..
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 447899999999999887732110 2346789999999999999999999988 78899999876
Q ss_pred hhhhh----------------hhh-hHHHHHHHHHHHHhc-CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC
Q psy2637 297 LTSKY----------------VGQ-GEKLVRALFAMAREL-QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL 358 (502)
Q Consensus 297 l~~~~----------------~g~-~~~~~~~lf~~a~~~-~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~ 358 (502)
..+.. .+. .......++...... .|.+|||||+|.+.... .....+..++..+...
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQEL 162 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhhc
Confidence 43211 011 122234444444333 36799999999985331 0122333344433322
Q ss_pred CCCCCCcEEEEEEcCCC---CCCcHHHHccccc-eeeecCCCHHHHHHHHHHHHhh--cCCCCCHHHHHHHHHhcC---C
Q psy2637 359 HSNSEHRLLVMGATNRP---QELDEAVLRRFSK-RIYVTLPDSKTRKSLLEKLLNK--HGNPLSQLELDAVAKLTE---G 429 (502)
Q Consensus 359 ~~~~~~~v~vIaaTN~~---~~l~~~l~rRf~~-~I~i~~P~~~er~~il~~~l~~--~~~~l~~~~l~~la~~t~---g 429 (502)
.. ..++.+|++||.+ +.+++.+.+||.. .+.|++|+.+++.+++...+.. .+..+++..++.++..+. |
T Consensus 163 ~~--~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 240 (387)
T 2v1u_A 163 GD--RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG 240 (387)
T ss_dssp -------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC
T ss_pred CC--CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc
Confidence 10 3468899999887 7889999999975 7999999999999999999875 345567778888888887 6
Q ss_pred CCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhh
Q psy2637 430 YSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRI 478 (502)
Q Consensus 430 ~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~ 478 (502)
. ++.+..+++.++..+..+. ...|+.+|+..++...
T Consensus 241 ~-~r~~~~~l~~a~~~a~~~~------------~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 241 D-ARRALDLLRVAGEIAERRR------------EERVRREHVYSARAEI 276 (387)
T ss_dssp C-HHHHHHHHHHHHHHHHHTT------------CSCBCHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHHcC------------CCCcCHHHHHHHHHHH
Confidence 4 5566677777765544321 2457777777776554
No 46
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.77 E-value=2.7e-17 Score=154.66 Aligned_cols=204 Identities=20% Similarity=0.217 Sum_probs=148.0
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-----cCceEEeecc
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-----NATFFSISAA 295 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~i~~s 295 (502)
..++..|++++|++..++.+.+++... ...+++|+||+|||||++|+++++.+ ...++.++++
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 356778999999999999999988432 23459999999999999999999976 4567788876
Q ss_pred chhhhhhhhhHHHHHHHHHHHH------hcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEE
Q psy2637 296 SLTSKYVGQGEKLVRALFAMAR------ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVM 369 (502)
Q Consensus 296 ~l~~~~~g~~~~~~~~lf~~a~------~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vI 369 (502)
...+. ..+...+.... ...+++|+|||+|.+.+. .+..++..++.. ..++++|
T Consensus 78 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~----~~~~~~i 136 (226)
T 2chg_A 78 DERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMY----SKSCRFI 136 (226)
T ss_dssp CTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHT----TTTEEEE
T ss_pred cccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-----------HHHHHHHHHHhc----CCCCeEE
Confidence 54321 11122222221 245789999999988432 122344444321 2457888
Q ss_pred EEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHh
Q psy2637 370 GATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRE 449 (502)
Q Consensus 370 aaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~aire 449 (502)
++||.+..+.+.+.+|+. .+.+++|+.++..+++...+...+..+++..++.++..+.| .++.+.++++.++..+
T Consensus 137 ~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~--- 211 (226)
T 2chg_A 137 LSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG--- 211 (226)
T ss_dssp EEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC---
T ss_pred EEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC---
Confidence 999999999999999997 89999999999999999999888888888888888887776 4444444444443321
Q ss_pred hhhhhhhhhcccCCCcccHHHHHHHHH
Q psy2637 450 LNADQVIKVDLKSVRNISYRDFLESLK 476 (502)
Q Consensus 450 l~~~~~~~v~~~~~~~It~~d~~~al~ 476 (502)
..|+.+|+..++.
T Consensus 212 --------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 --------------EVVDADTIYQITA 224 (226)
T ss_dssp --------------SCBCHHHHHHHHH
T ss_pred --------------ceecHHHHHHHhc
Confidence 4699999988875
No 47
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.77 E-value=1.9e-17 Score=174.35 Aligned_cols=222 Identities=20% Similarity=0.299 Sum_probs=152.2
Q ss_pred CCCCCccccc-C--hHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-----cCceEEee
Q psy2637 222 GSPVQWQDIA-G--QEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-----NATFFSIS 293 (502)
Q Consensus 222 ~~~~~~~~ii-G--~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~i~ 293 (502)
.+..+|++++ | +..+...+...+..+ +. ..+++|+||||||||++|+++++.+ +.+++.++
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKHP----------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHST----------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhCC----------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 4555899988 5 344555555554222 12 5789999999999999999999988 78899999
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcC
Q psy2637 294 AASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATN 373 (502)
Q Consensus 294 ~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN 373 (502)
+..+...+.+.........|.......+++|||||++.+.... ..+..++..++..... ...+||++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---------~~q~~l~~~l~~l~~~--~~~iIitt~~ 236 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---------GVQTELFHTFNELHDS--GKQIVICSDR 236 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---------HHHHHHHHHHHHHHTT--TCEEEEEESS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---------HHHHHHHHHHHHHHHC--CCeEEEEECC
Confidence 9887665544333221223333333367899999999885421 1122333333322222 2245555555
Q ss_pred CCCC---CcHHHHcccc--ceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHH
Q psy2637 374 RPQE---LDEAVLRRFS--KRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIR 448 (502)
Q Consensus 374 ~~~~---l~~~l~rRf~--~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~air 448 (502)
.+.. +++.+++||. .++.+++|+.++|.+++...+...+..++++.++.++..+.| +.+++..+++.+...+..
T Consensus 237 ~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~ 315 (440)
T 2z4s_A 237 EPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKET 315 (440)
T ss_dssp CGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 5543 8899999995 589999999999999999999888888888889999998876 677888887777654432
Q ss_pred hhhhhhhhhhcccCCCcccHHHHHHHHHhhc
Q psy2637 449 ELNADQVIKVDLKSVRNISYRDFLESLKRIR 479 (502)
Q Consensus 449 el~~~~~~~v~~~~~~~It~~d~~~al~~~~ 479 (502)
. +..|+.+++.++++...
T Consensus 316 ~-------------~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 316 T-------------GKEVDLKEAILLLKDFI 333 (440)
T ss_dssp S-------------SSCCCHHHHHHHTSTTT
T ss_pred h-------------CCCCCHHHHHHHHHHHh
Confidence 1 23577888877777654
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.77 E-value=3e-17 Score=165.61 Aligned_cols=199 Identities=19% Similarity=0.268 Sum_probs=138.5
Q ss_pred CCCCCccccc-C--hHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeecc
Q psy2637 222 GSPVQWQDIA-G--QEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAA 295 (502)
Q Consensus 222 ~~~~~~~~ii-G--~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s 295 (502)
.+..+|++++ | +..+...+..++..+ +..+.+++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4556888987 4 556666666666332 2245789999999999999999999988 7899999998
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 296 SLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 296 ~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
++...+.+.........|.... ..+++|||||++.+.... ..+..++..++..... ...+|+++++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~~~~--~~~iii~~~~~~ 142 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTLYLL--EKQIILASDRHP 142 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH---------HHHHHHHHHHHHHHHT--TCEEEEEESSCG
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh---------HHHHHHHHHHHHHHHC--CCeEEEEecCCh
Confidence 8866555443322122232222 246899999999985421 1122233222221111 225666666666
Q ss_pred C---CCcHHHHcccc--ceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Q psy2637 376 Q---ELDEAVLRRFS--KRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALG 445 (502)
Q Consensus 376 ~---~l~~~l~rRf~--~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~ 445 (502)
. .+++.+.+||. .++.+++ +.+++.+++...+...+..++++.++.++..+ | +.+++..++..+...
T Consensus 143 ~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 143 QKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 5 68899999995 4788888 99999999999999888889999999999998 5 556676666655543
No 49
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.76 E-value=5.5e-19 Score=187.58 Aligned_cols=173 Identities=24% Similarity=0.361 Sum_probs=129.0
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc----------cCceE
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC----------NATFF 290 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv 290 (502)
...+..+++++|++..++.+...+.. ....++||+||||||||++|+++|+.+ +.+|+
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 35566899999999999999988743 234689999999999999999999996 67899
Q ss_pred EeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEE
Q psy2637 291 SISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMG 370 (502)
Q Consensus 291 ~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIa 370 (502)
.++++ ..+.|..+..+..+|..+....++||||| .. . ..++.|+..+. ...+++|+
T Consensus 241 ~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--~~---------~----~a~~~L~~~L~------~g~v~vI~ 296 (468)
T 3pxg_A 241 TLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID--AA---------I----DASNILKPSLA------RGELQCIG 296 (468)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC--C---------------------CCCTT------SSSCEEEE
T ss_pred EeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe--Cc---------h----hHHHHHHHhhc------CCCEEEEe
Confidence 99987 66677777778889999988888999999 10 0 11222322222 23589999
Q ss_pred EcCCCC-----CCcHHHHccccceeeecCCCHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHhcCCC
Q psy2637 371 ATNRPQ-----ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK----HGNPLSQLELDAVAKLTEGY 430 (502)
Q Consensus 371 aTN~~~-----~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~----~~~~l~~~~l~~la~~t~g~ 430 (502)
+||.++ .+++++.|||+ ++.|+.|+.+++.+|++.++.. ++..+++..+..++..+.+|
T Consensus 297 at~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~ 364 (468)
T 3pxg_A 297 ATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRY 364 (468)
T ss_dssp ECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 999886 68999999997 7999999999999999988776 67778898888888776544
No 50
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.76 E-value=1.6e-17 Score=167.53 Aligned_cols=189 Identities=14% Similarity=0.168 Sum_probs=138.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
+.+.|.+|++++|++.+++.+..++.. +..+..+|++||||||||++|+++++.++.+++.++++...
T Consensus 18 ~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~- 85 (324)
T 3u61_B 18 QKYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK- 85 (324)
T ss_dssp HHSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-
T ss_pred HhhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-
Confidence 346788999999999999999998842 12346678889999999999999999999999999987643
Q ss_pred hhhhhhHHHHHHHHHHHHhc-----CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCC
Q psy2637 300 KYVGQGEKLVRALFAMAREL-----QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR 374 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~-----~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~ 374 (502)
...+...+...... .+++|||||+|.+.+ ...++.|+..++.. ..++++|++||.
T Consensus 86 ------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~----~~~~~iI~~~n~ 145 (324)
T 3u61_B 86 ------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY----SSNCSIIITANN 145 (324)
T ss_dssp ------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH----GGGCEEEEEESS
T ss_pred ------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC----CCCcEEEEEeCC
Confidence 11223333332222 468999999998841 11233444444422 235788999999
Q ss_pred CCCCcHHHHccccceeeecCCCHHHHHHHHHHH-------HhhcCCCCCH-HHHHHHHHhcCCCCHHHHHHHHHH
Q psy2637 375 PQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKL-------LNKHGNPLSQ-LELDAVAKLTEGYSGSDLTNLAKD 441 (502)
Q Consensus 375 ~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~-------l~~~~~~l~~-~~l~~la~~t~g~s~~dL~~L~~~ 441 (502)
+..+++++.+||. ++.|++|+.+++.+++..+ +...+..+++ ..++.++..+.|.....+..|...
T Consensus 146 ~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 146 IDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp GGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred ccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999996 8999999999876655444 3456677777 888899998888777665555443
No 51
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.75 E-value=2.5e-17 Score=156.61 Aligned_cols=211 Identities=22% Similarity=0.233 Sum_probs=148.2
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceE--Eeeccc--
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFF--SISAAS-- 296 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv--~i~~s~-- 296 (502)
...+..|++++|++..++.+..++... ..+..++|+||+|||||++|+++++.+..... ...|..
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 466778999999999999999887421 22357999999999999999999998743211 111100
Q ss_pred ----hhh----h------hhhhhHHHHHHHHHHHH----hcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC
Q psy2637 297 ----LTS----K------YVGQGEKLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL 358 (502)
Q Consensus 297 ----l~~----~------~~g~~~~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~ 358 (502)
+.. . ........+..+++.+. ...+.+|+|||+|.+.. ..+..++..++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~l~~~l~~- 152 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLKTLEE- 152 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHHHHHHS-
T ss_pred HHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHHHHHHHhc-
Confidence 000 0 00011222334444332 22468999999998732 123345555542
Q ss_pred CCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHH
Q psy2637 359 HSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNL 438 (502)
Q Consensus 359 ~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L 438 (502)
...++++|++||.+..+.+.+.+|+ ..+.+++|+.++..+++..++...+..+++..++.++..+.| .++.+..+
T Consensus 153 ---~~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~ 227 (250)
T 1njg_A 153 ---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSL 227 (250)
T ss_dssp ---CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHH
T ss_pred ---CCCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 2346888999999889999999997 489999999999999999999888888889899999999987 77788888
Q ss_pred HHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHH
Q psy2637 439 AKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESL 475 (502)
Q Consensus 439 ~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al 475 (502)
++.+...+ ...|+.+|+.+++
T Consensus 228 ~~~~~~~~----------------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 228 TDQAIASG----------------DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHTTT----------------TSSBCHHHHHHHS
T ss_pred HHHHHhcc----------------CceecHHHHHHHh
Confidence 77764221 1368899888765
No 52
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.74 E-value=6e-17 Score=169.20 Aligned_cols=254 Identities=24% Similarity=0.336 Sum_probs=165.6
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCC--CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh-hhhhh
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLR--TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS-KYVGQ 304 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~--~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~-~~~g~ 304 (502)
++|+|++.+++.+..++..+..++.++..+. .++.++||+||||||||++|+++|+.++.+|+.++++.+.+ .|.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4699999999999998876655554444443 35688999999999999999999999999999999988776 46663
Q ss_pred -hHHHHHHHHHHHH------------------------------------------------------------------
Q psy2637 305 -GEKLVRALFAMAR------------------------------------------------------------------ 317 (502)
Q Consensus 305 -~~~~~~~lf~~a~------------------------------------------------------------------ 317 (502)
.+..++.+|+.+.
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 3444443333220
Q ss_pred ------------------------------------------------------------------------h-cCCeEE
Q psy2637 318 ------------------------------------------------------------------------E-LQPSII 324 (502)
Q Consensus 318 ------------------------------------------------------------------------~-~~p~iL 324 (502)
. ...+++
T Consensus 175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il 254 (444)
T 1g41_A 175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 254 (444)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence 0 023589
Q ss_pred EEcCCcchhccccc-ChhHHHHHHHHHHHHHhccCCCC------CCCcEEEEEEc----CCCCCCcHHHHccccceeeec
Q psy2637 325 FIDEVDSVLSERKE-GEHEASRRLKTEFLLEFDGLHSN------SEHRLLVMGAT----NRPQELDEAVLRRFSKRIYVT 393 (502)
Q Consensus 325 fLDEId~L~~~~~~-~~~~~~~~~~~~ll~~l~g~~~~------~~~~v~vIaaT----N~~~~l~~~l~rRf~~~I~i~ 393 (502)
|+||||++...... ...-....++..||..+++.... ...++++|+|. +.+..+.|++..||+.++.++
T Consensus 255 ~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~ 334 (444)
T 1g41_A 255 FIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELT 334 (444)
T ss_dssp EEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECC
T ss_pred eHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCC
Confidence 99999999765332 22233445788899999874211 23568999887 234445588999999779999
Q ss_pred CCCHHHHHHHHHH----H-------HhhcC--CCCCHHHHHHHHHh-------cCCCCHHHHHHHHHHHHhhhHHhhhhh
Q psy2637 394 LPDSKTRKSLLEK----L-------LNKHG--NPLSQLELDAVAKL-------TEGYSGSDLTNLAKDAALGPIRELNAD 453 (502)
Q Consensus 394 ~P~~~er~~il~~----~-------l~~~~--~~l~~~~l~~la~~-------t~g~s~~dL~~L~~~a~~~airel~~~ 453 (502)
.++.++..+|+.. + +...+ ..+++..+..+++. +...-.+.|+.++.........+....
T Consensus 335 ~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~ 414 (444)
T 1g41_A 335 ALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM 414 (444)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhcccc
Confidence 9999999999831 1 11112 23566666666653 233444555555554444433333111
Q ss_pred hhhhhcccCCCcccHHHHHHHHHhhcCCCCHHHHHHH
Q psy2637 454 QVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQY 490 (502)
Q Consensus 454 ~~~~v~~~~~~~It~~d~~~al~~~~~s~~~~~l~~~ 490 (502)
-.....|+.+++...+. +.+...++.+|
T Consensus 415 ------~~~~~~i~~~~v~~~l~---~~~~~~dl~~~ 442 (444)
T 1g41_A 415 ------NGQTVNIDAAYVADALG---EVVENEDLSRF 442 (444)
T ss_dssp ------TTCEEEECHHHHHHHHT---TTTTCHHHHHH
T ss_pred ------CCCeEEEeHHHHHHhcC---ccccCCChhcc
Confidence 01234688888887664 34556777776
No 53
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.74 E-value=5e-17 Score=165.04 Aligned_cols=231 Identities=20% Similarity=0.237 Sum_probs=132.0
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCce----EEeeccch
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATF----FSISAASL 297 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~f----v~i~~s~l 297 (502)
.++.+|++++|++.+++.+......+ ...++||+||||||||++|+++|+.++... ..++|...
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 46678999999999877765444221 235799999999999999999999885210 00122221
Q ss_pred h-----------------------------hhhhhhh--HHH--------HHHHHHHHHhcCCeEEEEcCCcchhccccc
Q psy2637 298 T-----------------------------SKYVGQG--EKL--------VRALFAMARELQPSIIFIDEVDSVLSERKE 338 (502)
Q Consensus 298 ~-----------------------------~~~~g~~--~~~--------~~~lf~~a~~~~p~iLfLDEId~L~~~~~~ 338 (502)
. ....|.. ... ..+.+..+ .+++|||||+|.+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a---~~~vl~iDEi~~l~~~--- 159 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARA---NRGYLYIDECNLLEDH--- 159 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHH---TTEEEEETTGGGSCHH---
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeec---CCCEEEEeChhhCCHH---
Confidence 1 1111110 000 00112222 3589999999988432
Q ss_pred ChhHHHHHHHHHHHHHhcc---------CCCCCCCcEEEEEEcCCCC-CCcHHHHccccceeeecCC-CHHHHHHHHHHH
Q psy2637 339 GEHEASRRLKTEFLLEFDG---------LHSNSEHRLLVMGATNRPQ-ELDEAVLRRFSKRIYVTLP-DSKTRKSLLEKL 407 (502)
Q Consensus 339 ~~~~~~~~~~~~ll~~l~g---------~~~~~~~~v~vIaaTN~~~-~l~~~l~rRf~~~I~i~~P-~~~er~~il~~~ 407 (502)
.+..|+..++. .....+.++++|+|||... .+++++++||+..+.++.| +.+++.+|+...
T Consensus 160 --------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 160 --------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp --------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHH
Confidence 23344444332 1111123689999999754 8999999999867999999 577777888764
Q ss_pred HhhcCCC--------CCHH-HHHHHH---Hh--cCCCCHHHHHHHHHHHHhhhH---Hhhhhhhhhhhcc---cCCCccc
Q psy2637 408 LNKHGNP--------LSQL-ELDAVA---KL--TEGYSGSDLTNLAKDAALGPI---RELNADQVIKVDL---KSVRNIS 467 (502)
Q Consensus 408 l~~~~~~--------l~~~-~l~~la---~~--t~g~s~~dL~~L~~~a~~~ai---rel~~~~~~~v~~---~~~~~It 467 (502)
+...+.. .... ....+. .. .-.++.+.+..++++++.++. |++.+....+... .....|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~ 311 (350)
T 1g8p_A 232 DTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVG 311 (350)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCC
T ss_pred HhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCC
Confidence 3321100 0000 001110 00 113566666666666665332 4444333322211 2345699
Q ss_pred HHHHHHHHHhh
Q psy2637 468 YRDFLESLKRI 478 (502)
Q Consensus 468 ~~d~~~al~~~ 478 (502)
.+|+..++..+
T Consensus 312 ~~~v~~a~~~~ 322 (350)
T 1g8p_A 312 RDHLKRVATMA 322 (350)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988753
No 54
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.74 E-value=1.2e-16 Score=152.69 Aligned_cols=207 Identities=15% Similarity=0.109 Sum_probs=142.9
Q ss_pred CCCCcccccCh---HHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc---CceEEeeccc
Q psy2637 223 SPVQWQDIAGQ---EVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN---ATFFSISAAS 296 (502)
Q Consensus 223 ~~~~~~~iiG~---~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~---~~fv~i~~s~ 296 (502)
++.+|++++|. +.+.+.+..++.. ..+.+++|+||||||||++|+++++.+. .+++.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 34688999972 4666677666532 1357899999999999999999999874 6788888887
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcC-CC
Q psy2637 297 LTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATN-RP 375 (502)
Q Consensus 297 l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN-~~ 375 (502)
+...+..... . ...+++|+|||++.+..... .+..++..++..... ..+.+|.+|+ .+
T Consensus 91 ~~~~~~~~~~--------~--~~~~~vliiDe~~~~~~~~~---------~~~~l~~~l~~~~~~--~~~~ii~~~~~~~ 149 (242)
T 3bos_A 91 HASISTALLE--------G--LEQFDLICIDDVDAVAGHPL---------WEEAIFDLYNRVAEQ--KRGSLIVSASASP 149 (242)
T ss_dssp GGGSCGGGGT--------T--GGGSSEEEEETGGGGTTCHH---------HHHHHHHHHHHHHHH--CSCEEEEEESSCT
T ss_pred HHHHHHHHHH--------h--ccCCCEEEEeccccccCCHH---------HHHHHHHHHHHHHHc--CCCeEEEEcCCCH
Confidence 6654322111 0 13468999999998843310 111222222211111 1233444444 34
Q ss_pred C---CCcHHHHcccc--ceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhh
Q psy2637 376 Q---ELDEAVLRRFS--KRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIREL 450 (502)
Q Consensus 376 ~---~l~~~l~rRf~--~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel 450 (502)
. .+.+.+.+||. .++.+++|+.+++.+++..++...+..+++..++.++..+.| +.+++..+++.+...+..+
T Consensus 150 ~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~- 227 (242)
T 3bos_A 150 MEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH- 227 (242)
T ss_dssp TTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh-
Confidence 3 45688999984 589999999999999999999888888899999999998876 6777888877776655332
Q ss_pred hhhhhhhhcccCCCcccHHHHHHHHH
Q psy2637 451 NADQVIKVDLKSVRNISYRDFLESLK 476 (502)
Q Consensus 451 ~~~~~~~v~~~~~~~It~~d~~~al~ 476 (502)
...|+.+++..++.
T Consensus 228 ------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 228 ------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp ------------TCCCCHHHHHHHHT
T ss_pred ------------CCCCcHHHHHHHhh
Confidence 24699999988764
No 55
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.73 E-value=2.3e-17 Score=164.89 Aligned_cols=205 Identities=18% Similarity=0.224 Sum_probs=132.8
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh---
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY--- 301 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~--- 301 (502)
.+++|++.+++.+...+...... ......+..++||+||||||||++|+++|+.+ +.+++.++|+.+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~---~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT---CSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 36889999999999887432100 00111234579999999999999999999988 5679999998765421
Q ss_pred --hh-------hhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCC-------CCc
Q psy2637 302 --VG-------QGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNS-------EHR 365 (502)
Q Consensus 302 --~g-------~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~-------~~~ 365 (502)
.| .... ..+........+++|||||+|.+.+ ..+..|+..++...... -.+
T Consensus 94 ~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 11 1100 1223333444558999999998832 24455666554321110 125
Q ss_pred EEEEEEcCC--------------------------CCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHH
Q psy2637 366 LLVMGATNR--------------------------PQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLE 419 (502)
Q Consensus 366 v~vIaaTN~--------------------------~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~ 419 (502)
+++|+|||. ...+++++++||+..+.+.+|+.+++..++..++.+..
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~------- 233 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLR------- 233 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHH-------
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHH-------
Confidence 779999998 44678899999988999999999999999988776431
Q ss_pred HHHHHH--hcCCCCHHHHHHHHHHHH--hhhHHhhhhhhhh
Q psy2637 420 LDAVAK--LTEGYSGSDLTNLAKDAA--LGPIRELNADQVI 456 (502)
Q Consensus 420 l~~la~--~t~g~s~~dL~~L~~~a~--~~airel~~~~~~ 456 (502)
..+.. ....++++.+..|..++| ++++|++.+..++
T Consensus 234 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~ 273 (311)
T 4fcw_A 234 -ARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQR 273 (311)
T ss_dssp -HHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHH
T ss_pred -HHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHH
Confidence 11111 112355566666666666 5566665554444
No 56
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.73 E-value=5.7e-17 Score=184.12 Aligned_cols=204 Identities=20% Similarity=0.244 Sum_probs=139.1
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCC---CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLR---TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY 301 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~---~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~ 301 (502)
.+++|++.+++.+...+.... .++. .|..++||+||||||||++|+++|+.+ +.+|+.++|+++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~ 631 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRAR------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH 631 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHG------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSG
T ss_pred cccCCcHHHHHHHHHHHHHHh------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchh
Confidence 568999999999988874321 1111 233589999999999999999999998 7899999999876531
Q ss_pred ------------hhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCC--C-----
Q psy2637 302 ------------VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSN--S----- 362 (502)
Q Consensus 302 ------------~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~--~----- 362 (502)
.|... ...+.+......++||||||||.+. ..+++.|+..++...-. .
T Consensus 632 ~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~g~~vd 698 (854)
T 1qvr_A 632 AVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH-----------PDVFNILLQILDDGRLTDSHGRTVD 698 (854)
T ss_dssp GGGGC----------------CHHHHHHHCSSEEEEESSGGGSC-----------HHHHHHHHHHHTTTEECCSSSCCEE
T ss_pred HHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC-----------HHHHHHHHHHhccCceECCCCCEec
Confidence 12111 1233444455566899999998773 34667777777632110 0
Q ss_pred CCcEEEEEEcCCC--------------------------CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCC
Q psy2637 363 EHRLLVMGATNRP--------------------------QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLS 416 (502)
Q Consensus 363 ~~~v~vIaaTN~~--------------------------~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~ 416 (502)
-.+++||+|||.. ..+.+++++||+.++.+.+|+.+++..|+..++.+..
T Consensus 699 ~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~---- 774 (854)
T 1qvr_A 699 FRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLR---- 774 (854)
T ss_dssp CTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHH----
T ss_pred cCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHH----
Confidence 1357899999972 2467888899988899999999999999988876421
Q ss_pred HHHHHHHHHh--cCCCCHHHHHHHHHHHH--hhhHHhhhhhhhhhh
Q psy2637 417 QLELDAVAKL--TEGYSGSDLTNLAKDAA--LGPIRELNADQVIKV 458 (502)
Q Consensus 417 ~~~l~~la~~--t~g~s~~dL~~L~~~a~--~~airel~~~~~~~v 458 (502)
..+... ...++++.+..|..+.| ++++|++.+.+++.+
T Consensus 775 ----~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~ 816 (854)
T 1qvr_A 775 ----ARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQREL 816 (854)
T ss_dssp ----HHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHT
T ss_pred ----HHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHH
Confidence 112211 12466777777777777 677777766655543
No 57
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=3.5e-17 Score=175.78 Aligned_cols=206 Identities=19% Similarity=0.193 Sum_probs=137.6
Q ss_pred hcCCCCCCcccccChHHHHHHHHHHHhCcCCC-hhhhhcCC----CCCcceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 219 LEGGSPVQWQDIAGQEVAKQALHEMVILPSLR-PELFTGLR----TPSRGLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 219 ~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~-~~l~~~~~----~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
.+.+.|.+|++++|++.+++.+.+++...... +..+...+ .+..++||+||||||||++|+++|++++.+++.++
T Consensus 30 ~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in 109 (516)
T 1sxj_A 30 TVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN 109 (516)
T ss_dssp HHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 34578889999999999999999998542110 11111111 24578999999999999999999999999999999
Q ss_pred ccchhhhhhhhhHH-------HHHHHHHHH-----HhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCC
Q psy2637 294 AASLTSKYVGQGEK-------LVRALFAMA-----RELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSN 361 (502)
Q Consensus 294 ~s~l~~~~~g~~~~-------~~~~lf~~a-----~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 361 (502)
|++..........- .+.++|..+ ....++||||||+|.+..... .. ...++..++.
T Consensus 110 ~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~----~~----l~~L~~~l~~---- 177 (516)
T 1sxj_A 110 ASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR----GG----VGQLAQFCRK---- 177 (516)
T ss_dssp TTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST----TH----HHHHHHHHHH----
T ss_pred CCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH----HH----HHHHHHHHHh----
Confidence 98876532211000 011223222 124568999999999965421 11 1223333332
Q ss_pred CCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHH
Q psy2637 362 SEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNL 438 (502)
Q Consensus 362 ~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L 438 (502)
...++++|+++.....++ .+.+|+ ..+.|+.|+.+++.+++...+...+..+++..+..++..+.|..+..+..|
T Consensus 178 ~~~~iIli~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 178 TSTPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp CSSCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCCEEEEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 123355554443334454 355555 589999999999999999999888888888899999999887555444444
No 58
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.72 E-value=3.1e-17 Score=169.08 Aligned_cols=239 Identities=21% Similarity=0.233 Sum_probs=139.4
Q ss_pred cccChHHHHHHHHHHHhCcCCChhh------------------hhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceE
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPEL------------------FTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFF 290 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l------------------~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv 290 (502)
.++|++.+++.|..++......... ......++.++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5899999999999877322111110 1133456788999999999999999999999999999
Q ss_pred Eeeccchh-hhhhhhh-HHHHHHHHHHHH----hcCCeEEEEcCCcchhcccccCh---hHHHHHHHHHHHHHhccCCC-
Q psy2637 291 SISAASLT-SKYVGQG-EKLVRALFAMAR----ELQPSIIFIDEVDSVLSERKEGE---HEASRRLKTEFLLEFDGLHS- 360 (502)
Q Consensus 291 ~i~~s~l~-~~~~g~~-~~~~~~lf~~a~----~~~p~iLfLDEId~L~~~~~~~~---~~~~~~~~~~ll~~l~g~~~- 360 (502)
.++|..+. ..+.|.. ...+..++..+. ...++||||||+|.+...+.... ......+++.|+..+++..-
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3444443 333444544322 23568999999999976532211 11112356677777764310
Q ss_pred ----------------CCCCcEEEEEEcCC-----------------------------------------CCCCcHHHH
Q psy2637 361 ----------------NSEHRLLVMGATNR-----------------------------------------PQELDEAVL 383 (502)
Q Consensus 361 ----------------~~~~~v~vIaaTN~-----------------------------------------~~~l~~~l~ 383 (502)
....++++|+++|. ...+.+++.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 00134677777762 113568888
Q ss_pred ccccceeeecCCCHHHHHHHHHH----HHhhcCCCCCHHHHHHHHH--hcCCCCHHHHHHHHHHHHh--hhHHhhhhhhh
Q psy2637 384 RRFSKRIYVTLPDSKTRKSLLEK----LLNKHGNPLSQLELDAVAK--LTEGYSGSDLTNLAKDAAL--GPIRELNADQV 455 (502)
Q Consensus 384 rRf~~~I~i~~P~~~er~~il~~----~l~~~~~~l~~~~l~~la~--~t~g~s~~dL~~L~~~a~~--~airel~~~~~ 455 (502)
+||+.++.|++++.++...++.. ++.++ ...+.. ..-.++.+.+..|++++|. +++|++.+..+
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le 333 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQY--------QQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIE 333 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHH--------HHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHH--------HHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 89987899999999888888862 21110 000100 0112555666666666664 55566555544
Q ss_pred hhhcc---------cCCCcccHHHHHHHH
Q psy2637 456 IKVDL---------KSVRNISYRDFLESL 475 (502)
Q Consensus 456 ~~v~~---------~~~~~It~~d~~~al 475 (502)
+.+.. .....|+.+++..+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 334 DFCLDIMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHHHHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHHHHHHhhccCCCCCEEEEeHHHhcCCC
Confidence 43321 112358888776544
No 59
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.72 E-value=4.5e-17 Score=164.71 Aligned_cols=213 Identities=20% Similarity=0.213 Sum_probs=136.8
Q ss_pred cccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh--hhhhhh
Q psy2637 227 WQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT--SKYVGQ 304 (502)
Q Consensus 227 ~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~--~~~~g~ 304 (502)
+.+++|++.+++.+...+.. +.++||+||||||||++|+++|+.++.+++.++|.... ....|.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEE
T ss_pred ccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCc
Confidence 46799999999988877632 36899999999999999999999999999998874211 111111
Q ss_pred hH-HHHHHHHHHHHhcC---CeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc-------cCCCCCCCcEEEEEEcC
Q psy2637 305 GE-KLVRALFAMARELQ---PSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD-------GLHSNSEHRLLVMGATN 373 (502)
Q Consensus 305 ~~-~~~~~lf~~a~~~~---p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~-------g~~~~~~~~v~vIaaTN 373 (502)
.. ....+.+. .... .++|||||+|.+.+. .+..++..++ |.....+.++++|+|+|
T Consensus 92 ~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~~-----------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~n 158 (331)
T 2r44_A 92 MIYNQHKGNFE--VKKGPVFSNFILADEVNRSPAK-----------VQSALLECMQEKQVTIGDTTYPLDNPFLVLATQN 158 (331)
T ss_dssp EEEETTTTEEE--EEECTTCSSEEEEETGGGSCHH-----------HHHHHHHHHHHSEEEETTEEEECCSSCEEEEEEC
T ss_pred eeecCCCCceE--eccCcccccEEEEEccccCCHH-----------HHHHHHHHHhcCceeeCCEEEECCCCEEEEEecC
Confidence 00 00000000 0011 279999999987332 2333444333 21122234678898988
Q ss_pred CCC-----CCcHHHHccccceeeecCCCHHHHHHHHHHHHhhc----------------------CCCCCHHHHHHHHHh
Q psy2637 374 RPQ-----ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKH----------------------GNPLSQLELDAVAKL 426 (502)
Q Consensus 374 ~~~-----~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~----------------------~~~l~~~~l~~la~~ 426 (502)
..+ .+++++++||...+.++.|+.+++.++++..+... +..+++..++.++..
T Consensus 159 p~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~ 238 (331)
T 2r44_A 159 PVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIEL 238 (331)
T ss_dssp TTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHH
T ss_pred CCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 653 38999999998679999999999999999887642 233445444444432
Q ss_pred c-------------------CCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhh
Q psy2637 427 T-------------------EGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRI 478 (502)
Q Consensus 427 t-------------------~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~ 478 (502)
. .|.+++.+..+++.|...+.- .....|+.+|+.+++..+
T Consensus 239 ~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l------------~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 239 VFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFF------------NNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHH------------TTCSBCCHHHHHHHHHHH
T ss_pred HHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHH------------cCCCCCCHHHHHHHHHHH
Confidence 2 133566555555554433322 234568999999888754
No 60
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=1.4e-16 Score=161.74 Aligned_cols=194 Identities=15% Similarity=0.179 Sum_probs=138.0
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc------CceEEee
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN------ATFFSIS 293 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~------~~fv~i~ 293 (502)
+.+.|.+|++++|++.+++.+..++... ...++||+||||||||++|+++++.++ ..++.++
T Consensus 29 ~k~~p~~~~~i~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 29 EKYRPKNLDEVTAQDHAVTVLKKTLKSA------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp HHTCCSSTTTCCSCCTTHHHHHHHTTCT------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred HhcCCCCHHHhhCCHHHHHHHHHHHhcC------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 3467889999999999999998887321 124599999999999999999999864 3577788
Q ss_pred ccchhhhhhhhhHHHHHHHHHH-----------H-HhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCC
Q psy2637 294 AASLTSKYVGQGEKLVRALFAM-----------A-RELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSN 361 (502)
Q Consensus 294 ~s~l~~~~~g~~~~~~~~lf~~-----------a-~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 361 (502)
+++..+. +.....+...... . ....+.+|||||+|.+.+. .++.++..++..
T Consensus 97 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-----------~~~~Ll~~le~~--- 160 (353)
T 1sxj_D 97 ASDERGI--SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-----------AQSALRRTMETY--- 160 (353)
T ss_dssp SSSCCCH--HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-----------HHHHHHHHHHHT---
T ss_pred cccccch--HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-----------HHHHHHHHHHhc---
Confidence 7664221 1111111111110 0 0123469999999988432 233445545432
Q ss_pred CCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2637 362 SEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKD 441 (502)
Q Consensus 362 ~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~ 441 (502)
...+++|.+||.+..+.+++.+|+. .+.+++|+.++...++...+...+..+++..++.++..+.|.... +.++++.
T Consensus 161 -~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~-~~~~l~~ 237 (353)
T 1sxj_D 161 -SGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRR-GITLLQS 237 (353)
T ss_dssp -TTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHH-HHHHHHH
T ss_pred -CCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHH-HHHHHHH
Confidence 2346777889999999999999996 899999999999999999998888889999999999999885444 4444444
Q ss_pred HHh
Q psy2637 442 AAL 444 (502)
Q Consensus 442 a~~ 444 (502)
++.
T Consensus 238 ~~~ 240 (353)
T 1sxj_D 238 ASK 240 (353)
T ss_dssp THH
T ss_pred HHH
Confidence 443
No 61
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.72 E-value=3.8e-16 Score=156.01 Aligned_cols=194 Identities=21% Similarity=0.251 Sum_probs=140.4
Q ss_pred hcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-----cCceEEee
Q psy2637 219 LEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-----NATFFSIS 293 (502)
Q Consensus 219 ~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~i~ 293 (502)
.+.+.|..|++++|++.+++.+..++.. ....++||+||||||||++|+++++.+ +.+++.++
T Consensus 8 ~~k~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 75 (319)
T 2chq_A 8 VEKYRPRTLDEVVGQDEVIQRLKGYVER------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (319)
T ss_dssp TTTTSCSSGGGSCSCHHHHHHHHTTTTT------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE
T ss_pred HHhcCCCCHHHHhCCHHHHHHHHHHHhC------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe
Confidence 3457788999999999999998887632 122359999999999999999999986 45688888
Q ss_pred ccchhhhhhhhhHHHHHHHHHHH--HhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEE
Q psy2637 294 AASLTSKYVGQGEKLVRALFAMA--RELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGA 371 (502)
Q Consensus 294 ~s~l~~~~~g~~~~~~~~lf~~a--~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaa 371 (502)
++...+. ......+....... ....+.+|+|||+|.+... .++.++..++ ..+.++++|++
T Consensus 76 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~L~~~le----~~~~~~~~i~~ 138 (319)
T 2chq_A 76 ASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTME----MYSKSCRFILS 138 (319)
T ss_dssp TTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-----------HHHTTGGGTS----SSSSSEEEEEE
T ss_pred CccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-----------HHHHHHHHHH----hcCCCCeEEEE
Confidence 8764331 11122112211010 0134689999999988321 2333444443 23456889999
Q ss_pred cCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy2637 372 TNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAA 443 (502)
Q Consensus 372 TN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~ 443 (502)
||.+..+.+.+.+|+. .+.+++|+.+++.+++...+.+.+..+++..++.++..+.|.....+ ++++.++
T Consensus 139 ~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~-~~l~~~~ 208 (319)
T 2chq_A 139 CNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAI-NALQGAA 208 (319)
T ss_dssp ESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHH-HHHHHHH
T ss_pred eCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence 9999999999999996 89999999999999999999988888899999999988877554444 3434333
No 62
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.71 E-value=3.7e-15 Score=151.27 Aligned_cols=221 Identities=19% Similarity=0.219 Sum_probs=151.9
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhh
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTS 299 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~ 299 (502)
....+.++++++|++.+++.+...+.... .-+.++.+++|+||||+|||++|++++..++.++...++..+..
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAK-------MRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHH-------HHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHH-------hcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 44566789999999999888887763210 00234578999999999999999999999988776665433221
Q ss_pred hhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCC------CC--------CCCc
Q psy2637 300 KYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLH------SN--------SEHR 365 (502)
Q Consensus 300 ~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~------~~--------~~~~ 365 (502)
...+..++.. ...++|+||||++.+.+. ..+.++..++... .. .-..
T Consensus 90 ------~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-----------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 90 ------QGDMAAILTS--LERGDVLFIDEIHRLNKA-----------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp ------HHHHHHHHHH--CCTTCEEEEETGGGCCHH-----------HHHHHHHHHHTSCCCC---------------CC
T ss_pred ------HHHHHHHHHH--ccCCCEEEEcchhhcCHH-----------HHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 1112222221 124579999999988431 1112222222110 00 0124
Q ss_pred EEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Q psy2637 366 LLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALG 445 (502)
Q Consensus 366 v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~ 445 (502)
+.++++|+.+..+++++++||...+.+++|+.+++.++++..+...+..++++.+..++..+.|. ++.+..+++.+...
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~-~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT-PRIAIRLTKRVRDM 229 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC-HHHHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC-hHHHHHHHHHHHHH
Confidence 67788999999999999999987789999999999999999998888888999999999999874 46666777766544
Q ss_pred hHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhc
Q psy2637 446 PIRELNADQVIKVDLKSVRNISYRDFLESLKRIR 479 (502)
Q Consensus 446 airel~~~~~~~v~~~~~~~It~~d~~~al~~~~ 479 (502)
+..+. ...|+.+++.+++....
T Consensus 230 a~~~~------------~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 230 LTVVK------------ADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHT------------CSSBCHHHHHHHHHHHT
T ss_pred HHHcC------------CCCcCHHHHHHHHHHhC
Confidence 43221 23577777777776554
No 63
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.71 E-value=3.1e-17 Score=150.58 Aligned_cols=159 Identities=21% Similarity=0.359 Sum_probs=113.9
Q ss_pred CCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc----------cCceEEee
Q psy2637 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC----------NATFFSIS 293 (502)
Q Consensus 224 ~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv~i~ 293 (502)
+..|++++|.+..++.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 45789999999999999888732 235789999999999999999999986 67888888
Q ss_pred ccchh--hhhhhhhHHHHHHHHHHHHh-cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEE
Q psy2637 294 AASLT--SKYVGQGEKLVRALFAMARE-LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMG 370 (502)
Q Consensus 294 ~s~l~--~~~~g~~~~~~~~lf~~a~~-~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIa 370 (502)
+..+. ..+.+.....+..++..+.. ..+.+|+|||+|.+.+............. +...++ ..++.+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~---l~~~~~------~~~~~~i~ 156 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNM---LKPALA------RGELHCVG 156 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHH---HHHHHH------TTSCCEEE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHH---HHHhhc------cCCeEEEE
Confidence 88765 33445555566677765543 45779999999999654321111111112 222222 12467888
Q ss_pred EcCCCC-----CCcHHHHccccceeeecCCCHHHHHHHH
Q psy2637 371 ATNRPQ-----ELDEAVLRRFSKRIYVTLPDSKTRKSLL 404 (502)
Q Consensus 371 aTN~~~-----~l~~~l~rRf~~~I~i~~P~~~er~~il 404 (502)
+||.+. .+++++.+||. .+.+++|+.+++.+++
T Consensus 157 ~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 157 ATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred eCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 888765 78999999997 7999999999998875
No 64
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.71 E-value=2.9e-16 Score=161.30 Aligned_cols=213 Identities=16% Similarity=0.165 Sum_probs=144.2
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-----------cCceEEeeccc
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-----------NATFFSISAAS 296 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-----------~~~fv~i~~s~ 296 (502)
++++|++..++.+..++.... -+..+.+++|+||||||||++|+++++.+ +.+++.++|..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV--------KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH--------TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 689999999999988773211 12345689999999999999999999987 88899999876
Q ss_pred hh-hhh------h-----------hh-hHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc
Q psy2637 297 LT-SKY------V-----------GQ-GEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG 357 (502)
Q Consensus 297 l~-~~~------~-----------g~-~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g 357 (502)
.. ... . +. ....+..++..+.... .+|+|||+|.+..... ... ++..++.
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~---~~~---~l~~l~~---- 160 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRG---GDI---VLYQLLR---- 160 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTT---SHH---HHHHHHT----
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCC---Cce---eHHHHhc----
Confidence 54 110 0 11 1222344444444433 3999999999854310 111 0222221
Q ss_pred CCCCCCCcEEEEEEcCCC---CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhh--cCCCCCHHHHHHHHHhcC---C
Q psy2637 358 LHSNSEHRLLVMGATNRP---QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK--HGNPLSQLELDAVAKLTE---G 429 (502)
Q Consensus 358 ~~~~~~~~v~vIaaTN~~---~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~--~~~~l~~~~l~~la~~t~---g 429 (502)
.. .++.+|++||.+ +.+++.+.+||...+.|++|+.++..+++...+.. .+..+++..++.++..+. |
T Consensus 161 ~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G 236 (384)
T 2qby_B 161 SD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHG 236 (384)
T ss_dssp SS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCC
T ss_pred CC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccC
Confidence 11 458999999987 67899999998779999999999999999998874 234567777888888776 4
Q ss_pred CCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhh
Q psy2637 430 YSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRI 478 (502)
Q Consensus 430 ~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~ 478 (502)
. .+.+..+++.|+..+. ....|+.+|+..++...
T Consensus 237 ~-~r~a~~~l~~a~~~a~--------------~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 237 D-ARKAVNLLFRAAQLAS--------------GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp C-HHHHHHHHHHHHHHTT--------------SSSCCCHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHhc--------------CCCccCHHHHHHHHHHH
Confidence 3 3444455565553322 12457777777666554
No 65
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=5.5e-16 Score=155.14 Aligned_cols=186 Identities=16% Similarity=0.169 Sum_probs=139.1
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-----cCceEEeecc
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-----NATFFSISAA 295 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~i~~s 295 (502)
.+.|..|++++|++..++.+..++... . ..+++|+||+|+|||++|+++++.+ +.+++.++++
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAKDG-----------N-MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHSC-----------C-CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHHcC-----------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 367778999999999999999987421 1 2349999999999999999999986 3457777776
Q ss_pred chhhhhhhhhHHHHHHHHHHHH-------hcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEE
Q psy2637 296 SLTSKYVGQGEKLVRALFAMAR-------ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLV 368 (502)
Q Consensus 296 ~l~~~~~g~~~~~~~~lf~~a~-------~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~v 368 (502)
+..+ ...+..++.... ...+.+|+|||+|.+... .++.|+..++. ++.++++
T Consensus 82 ~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~----~~~~~~~ 140 (323)
T 1sxj_B 82 DDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-----------AQQALRRTMEL----YSNSTRF 140 (323)
T ss_dssp SCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-----------HHHTTHHHHHH----TTTTEEE
T ss_pred cccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-----------HHHHHHHHHhc----cCCCceE
Confidence 5321 122333444333 223689999999988432 23334444442 2345788
Q ss_pred EEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy2637 369 MGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAK 440 (502)
Q Consensus 369 IaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~ 440 (502)
|.+||.+..+.+.+.+|+. .+.+++|+.++..+++...+...+..+++..++.++..+.|.....+..+..
T Consensus 141 il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 141 AFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8899999999999999996 8999999999999999999988888889999999999998866555554433
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=5.8e-16 Score=173.80 Aligned_cols=227 Identities=23% Similarity=0.301 Sum_probs=161.7
Q ss_pred CCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc----------cCceEEee
Q psy2637 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC----------NATFFSIS 293 (502)
Q Consensus 224 ~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv~i~ 293 (502)
+..|++++|++..++.+.+.+.. ....++||+||||||||++|+++|+.+ +..++.++
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred cCCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 45789999999999999888732 235789999999999999999999987 45677777
Q ss_pred ccchh--hhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEE
Q psy2637 294 AASLT--SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGA 371 (502)
Q Consensus 294 ~s~l~--~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaa 371 (502)
++.+. ..+.|..+..+..++..+....+++|||||+|.+.+........ ....+ .+...... ..+++|++
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~--~~~~~----~L~~~l~~--~~~~~I~a 321 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VDAAN----LIKPLLSS--GKIRVIGS 321 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH--HHHHH----HHSSCSSS--CCCEEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch--HHHHH----HHHHHHhC--CCeEEEEE
Confidence 77665 35677788888899998887778999999999997664432111 11122 22222222 35788999
Q ss_pred cCCC-----CCCcHHHHccccceeeecCCCHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHhcCC-----CCHHHHHH
Q psy2637 372 TNRP-----QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK----HGNPLSQLELDAVAKLTEG-----YSGSDLTN 437 (502)
Q Consensus 372 TN~~-----~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~----~~~~l~~~~l~~la~~t~g-----~s~~dL~~ 437 (502)
||.+ ..+++++.+||+ .+.|+.|+.+++.++++.++.. .+..+++..+..++..+.+ +.+..+..
T Consensus 322 t~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~ 400 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_dssp ECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHH
T ss_pred eCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHH
Confidence 9864 257788999997 7999999999999999988765 5677888888888776544 45556666
Q ss_pred HHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhc
Q psy2637 438 LAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIR 479 (502)
Q Consensus 438 L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~ 479 (502)
++..|.... ++.. .......|+.+|+..++....
T Consensus 401 lld~a~~~~--~~~~------~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 401 VIDEAGARA--RLMP------VSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHH--HHSS------SCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHH--hccc------ccccCCccCHHHHHHHHHHhc
Confidence 776665322 1100 011235688889988887643
No 67
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.70 E-value=1.6e-15 Score=155.75 Aligned_cols=226 Identities=16% Similarity=0.138 Sum_probs=151.0
Q ss_pred CcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCc--ceEEecCCCCcHHHHHHHHHHHc----cCceEEeeccchhh
Q psy2637 226 QWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSR--GLLLFGPPGNGKTMLARAVATAC----NATFFSISAASLTS 299 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~--~vLL~GppGtGKT~lAraia~~~----~~~fv~i~~s~l~~ 299 (502)
..++++|++..++.+..++.... . +..+. +++|+||||||||++++++++.+ +.+++.++|.....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~------~--~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWL------R--NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHH------H--STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCCChHHHHHHHHHHHHHHH------c--CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 44789999999999988873211 1 12234 89999999999999999999988 56788999866432
Q ss_pred h--hh--------------hh-hHHHHHHHHHHHHh-cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCC
Q psy2637 300 K--YV--------------GQ-GEKLVRALFAMARE-LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSN 361 (502)
Q Consensus 300 ~--~~--------------g~-~~~~~~~lf~~a~~-~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 361 (502)
. .. +. .......+...... ..|.+|+|||+|.+. ...+..++..++.....
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~~~~~~ 155 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEADKL 155 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHHhCCCC
Confidence 1 00 10 11222222222222 347899999999871 12334444444332211
Q ss_pred CCCcEEEEEEcCCC---CCCcHHHHccccc-eeeecCCCHHHHHHHHHHHHhhc--CCCCCHHHHHHHHHhc--------
Q psy2637 362 SEHRLLVMGATNRP---QELDEAVLRRFSK-RIYVTLPDSKTRKSLLEKLLNKH--GNPLSQLELDAVAKLT-------- 427 (502)
Q Consensus 362 ~~~~v~vIaaTN~~---~~l~~~l~rRf~~-~I~i~~P~~~er~~il~~~l~~~--~~~l~~~~l~~la~~t-------- 427 (502)
...++.+|++||.+ ..+++.+.+||.. .+.|++++.++..+++...+... ...+++..++.++..+
T Consensus 156 ~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (389)
T 1fnn_A 156 GAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDT 235 (389)
T ss_dssp SSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCT
T ss_pred CcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCC
Confidence 11358889999887 6788899999874 79999999999999999988752 2357888899999988
Q ss_pred -CCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhcCCCC
Q psy2637 428 -EGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIRRSVS 483 (502)
Q Consensus 428 -~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~~s~~ 483 (502)
.| .++.+..+++.|+..+..+. ...|+.+|+..++........
T Consensus 236 ~~G-~~r~~~~~l~~a~~~a~~~~------------~~~i~~~~v~~~~~~~~~~~~ 279 (389)
T 1fnn_A 236 NRG-DARLAIDILYRSAYAAQQNG------------RKHIAPEDVRKSSKEVLFGIS 279 (389)
T ss_dssp TSC-CHHHHHHHHHHHHHHHHHTT------------CSSCCHHHHHHHHHHHSCCCC
T ss_pred CCC-cHHHHHHHHHHHHHHHHHhC------------CCCcCHHHHHHHHHHHhhhhH
Confidence 44 45667777787776554432 235666666666665544433
No 68
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=1.4e-15 Score=152.51 Aligned_cols=193 Identities=22% Similarity=0.248 Sum_probs=138.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc-----CceEEeec
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN-----ATFFSISA 294 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~i~~ 294 (502)
+.+.|.+|++++|++.+++.+..++... ...++||+||||||||++|+++++.+. .+++.+++
T Consensus 17 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 17 EKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred hccCCCCHHHhhCCHHHHHHHHHHHHcC------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 3467889999999999999999887321 224599999999999999999999863 34777877
Q ss_pred cchhhhhhhhhHHHHHHHHHH--HHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEc
Q psy2637 295 ASLTSKYVGQGEKLVRALFAM--ARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGAT 372 (502)
Q Consensus 295 s~l~~~~~g~~~~~~~~lf~~--a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaT 372 (502)
++..+. ......+...... .....+.+|+|||+|.+... .++.++..++. .+.++++|++|
T Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~L~~~le~----~~~~~~~i~~~ 147 (327)
T 1iqp_A 85 SDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-----------AQQALRRTMEM----FSSNVRFILSC 147 (327)
T ss_dssp TCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-----------HHHHHHHHHHH----TTTTEEEEEEE
T ss_pred cccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-----------HHHHHHHHHHh----cCCCCeEEEEe
Confidence 654321 1111111111110 01134689999999988322 23344444442 23457888899
Q ss_pred CCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy2637 373 NRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAA 443 (502)
Q Consensus 373 N~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~ 443 (502)
|.+..+.+.+.+|+. .+.+++|+.++..+++...+...+..+++..++.++..+.|... .+.++++.++
T Consensus 148 ~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r-~~~~~l~~~~ 216 (327)
T 1iqp_A 148 NYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMR-RAINILQAAA 216 (327)
T ss_dssp SCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHH-HHHHHHHHHH
T ss_pred CCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHH-HHHHHHHHHH
Confidence 999999999999996 89999999999999999999888888899999999998877444 4444555554
No 69
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.69 E-value=2.8e-17 Score=146.61 Aligned_cols=133 Identities=11% Similarity=0.199 Sum_probs=98.1
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhhh
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQG 305 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~~ 305 (502)
+++|.+..++.+.+.+ ..++..+.+|||+||||||||++|+++|+.+ +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~----------~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRL----------QQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHH----------HHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHH----------HHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 5789999999998887 3344556889999999999999999999987 78999 999987654
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC-------CCC
Q psy2637 306 EKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP-------QEL 378 (502)
Q Consensus 306 ~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~-------~~l 378 (502)
....+.++.+.. ++|||||||.+... .+..++..+.. ...++++|+|||.+ ..+
T Consensus 66 -~~~~~~~~~a~~---g~l~ldei~~l~~~-----------~q~~Ll~~l~~----~~~~~~~I~~t~~~~~~~~~~~~~ 126 (145)
T 3n70_A 66 -PQLNDFIALAQG---GTLVLSHPEHLTRE-----------QQYHLVQLQSQ----EHRPFRLIGIGDTSLVELAASNHI 126 (145)
T ss_dssp -SCHHHHHHHHTT---SCEEEECGGGSCHH-----------HHHHHHHHHHS----SSCSSCEEEEESSCHHHHHHHSCC
T ss_pred -hhhhcHHHHcCC---cEEEEcChHHCCHH-----------HHHHHHHHHhh----cCCCEEEEEECCcCHHHHHHcCCC
Confidence 123456666654 89999999988432 33445555532 23457899999975 256
Q ss_pred cHHHHccccceeeecCCCH
Q psy2637 379 DEAVLRRFSKRIYVTLPDS 397 (502)
Q Consensus 379 ~~~l~rRf~~~I~i~~P~~ 397 (502)
.+.++.|+. .+.+..|++
T Consensus 127 ~~~L~~rl~-~~~i~lPpL 144 (145)
T 3n70_A 127 IAELYYCFA-MTQIACLPL 144 (145)
T ss_dssp CHHHHHHHH-HHEEECCCC
T ss_pred CHHHHHHhc-CCEEeCCCC
Confidence 778888886 677777764
No 70
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.69 E-value=1e-15 Score=156.56 Aligned_cols=205 Identities=17% Similarity=0.225 Sum_probs=139.9
Q ss_pred CCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc------cCceEEeeccchh
Q psy2637 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC------NATFFSISAASLT 298 (502)
Q Consensus 225 ~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~------~~~fv~i~~s~l~ 298 (502)
...++++|.+..++.+.+++..... +..+..++|+||+|||||++++++++.+ +.+++.++|....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 3457899999999999887632100 2346789999999999999999999988 7789999986543
Q ss_pred hhh----------------hhh-hHHHHHHHHHHHHhcC-CeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCC
Q psy2637 299 SKY----------------VGQ-GEKLVRALFAMARELQ-PSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHS 360 (502)
Q Consensus 299 ~~~----------------~g~-~~~~~~~lf~~a~~~~-p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 360 (502)
... .+. .......+++...... |.+|+|||++.+...... ..+..++..++..
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~-------~~l~~l~~~~~~~-- 159 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-------DILYKLSRINSEV-- 159 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS-------THHHHHHHHHHSC--
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC-------HHHHHHhhchhhc--
Confidence 210 011 1222344444444433 789999999998643211 1233444444432
Q ss_pred CCCCcEEEEEEcCCC---CCCcHHHHccccc-eeeecCCCHHHHHHHHHHHHhhc--CCCCCHHHHHHHHHhcC---CCC
Q psy2637 361 NSEHRLLVMGATNRP---QELDEAVLRRFSK-RIYVTLPDSKTRKSLLEKLLNKH--GNPLSQLELDAVAKLTE---GYS 431 (502)
Q Consensus 361 ~~~~~v~vIaaTN~~---~~l~~~l~rRf~~-~I~i~~P~~~er~~il~~~l~~~--~~~l~~~~l~~la~~t~---g~s 431 (502)
...++.+|++||.+ ..+++.+.+||.. .+.+++|+.++..+++...+... ...+++..++.++..+. |.
T Consensus 160 -~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~- 237 (386)
T 2qby_A 160 -NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGD- 237 (386)
T ss_dssp -CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCC-
T ss_pred -CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCC-
Confidence 23468889899876 4678888899853 89999999999999999887642 24567788888888776 64
Q ss_pred HHHHHHHHHHHHhhhHH
Q psy2637 432 GSDLTNLAKDAALGPIR 448 (502)
Q Consensus 432 ~~dL~~L~~~a~~~air 448 (502)
++.+..++..++..+..
T Consensus 238 ~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 238 ARRALDLLRVSGEIAER 254 (386)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555577777655443
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.69 E-value=1.8e-16 Score=177.90 Aligned_cols=201 Identities=17% Similarity=0.261 Sum_probs=140.4
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCC---CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhh----
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLR---TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK---- 300 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~---~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~---- 300 (502)
.+++|++.+++.+...+.... .++. .+..++||+||||||||++|+++|+.++.+|+.++|+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~ 531 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMAR------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVS 531 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCS
T ss_pred hhccCHHHHHHHHHHHHHHHh------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHh
Confidence 358999999999988774321 1221 334579999999999999999999999999999999988653
Q ss_pred --------hhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCC--C-----CCc
Q psy2637 301 --------YVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSN--S-----EHR 365 (502)
Q Consensus 301 --------~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~--~-----~~~ 365 (502)
|.|..+. ..+.+..+...++||||||||.+. ..+++.|+..++...-. . -.+
T Consensus 532 ~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~-----------~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 598 (758)
T 1r6b_X 532 RLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH-----------PDVFNILLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_dssp SSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTTEEEECTT
T ss_pred hhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC-----------HHHHHHHHHHhcCcEEEcCCCCEEecCC
Confidence 3333221 223445555667999999999873 23566677766532110 0 135
Q ss_pred EEEEEEcCCCC-------------------------CCcHHHHccccceeeecCCCHHHHHHHHHHHHhhc---------
Q psy2637 366 LLVMGATNRPQ-------------------------ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKH--------- 411 (502)
Q Consensus 366 v~vIaaTN~~~-------------------------~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~--------- 411 (502)
++||+|||... .+++++++||+.+|.|++|+.+++..|+..++.+.
T Consensus 599 ~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~ 678 (758)
T 1r6b_X 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGV 678 (758)
T ss_dssp EEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 88999999753 57789999998889999999999999999888642
Q ss_pred CCCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhhH
Q psy2637 412 GNPLSQLELDAVAKLT--EGYSGSDLTNLAKDAALGPI 447 (502)
Q Consensus 412 ~~~l~~~~l~~la~~t--~g~s~~dL~~L~~~a~~~ai 447 (502)
...+++..++.++... ..+..+.+..+++.+...++
T Consensus 679 ~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l 716 (758)
T 1r6b_X 679 SLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPL 716 (758)
T ss_dssp EEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHH
T ss_pred EEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHH
Confidence 1234566666666543 23445666666666555443
No 72
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.68 E-value=9.8e-16 Score=156.71 Aligned_cols=190 Identities=26% Similarity=0.288 Sum_probs=139.0
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc------------
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT------------ 288 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~------------ 288 (502)
.+.|..|++++|++..++.+...+... ..+..+||+||+|||||++|+++++.++..
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 467778999999999999999887321 224568999999999999999999987432
Q ss_pred ------------eEEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHH
Q psy2637 289 ------------FFSISAASLTSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFL 352 (502)
Q Consensus 289 ------------fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll 352 (502)
++.++... ......+..+++.+.. ..+.+|+|||+|.+.. ..++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll 140 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL 140 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHH
T ss_pred HHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHH
Confidence 12222111 0011123455555432 2457999999998832 1234455
Q ss_pred HHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCH
Q psy2637 353 LEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSG 432 (502)
Q Consensus 353 ~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~ 432 (502)
..++. ++.++++|++|+.+..+.+.+.+|+ ..+.+++|+.++..+++...+...+..+++..+..++..+.| ++
T Consensus 141 ~~le~----~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~ 214 (373)
T 1jr3_A 141 KTLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 214 (373)
T ss_dssp HHHHS----CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CH
T ss_pred HHHhc----CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CH
Confidence 55543 3456888889998888999999998 489999999999999999999888888899999999999987 55
Q ss_pred HHHHHHHHHHHh
Q psy2637 433 SDLTNLAKDAAL 444 (502)
Q Consensus 433 ~dL~~L~~~a~~ 444 (502)
+.+..+++.++.
T Consensus 215 r~~~~~l~~~~~ 226 (373)
T 1jr3_A 215 RDALSLTDQAIA 226 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666553
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.67 E-value=3.3e-16 Score=175.74 Aligned_cols=186 Identities=23% Similarity=0.350 Sum_probs=135.1
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc----------cCceE
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC----------NATFF 290 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv 290 (502)
...+..+++++|++..++.+...+.. ....++||+||||||||++|+++|+.+ +.+++
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 34566889999999999999988743 234689999999999999999999997 77888
Q ss_pred EeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEE
Q psy2637 291 SISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMG 370 (502)
Q Consensus 291 ~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIa 370 (502)
.+++ ...|.|..+..+..+|..+....++||||| ... ..++.++..++ ...+++|+
T Consensus 241 ~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~-------------~~~~~L~~~l~------~~~v~~I~ 296 (758)
T 3pxi_A 241 TLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--AAI-------------DASNILKPSLA------RGELQCIG 296 (758)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC--C---------------------CCCTT------SSSCEEEE
T ss_pred Eecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc--Cch-------------hHHHHHHHHHh------cCCEEEEe
Confidence 8887 455677788888999999998888999999 100 11222322222 23589999
Q ss_pred EcCCCC-----CCcHHHHccccceeeecCCCHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHhcC-----CCCHHHHH
Q psy2637 371 ATNRPQ-----ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK----HGNPLSQLELDAVAKLTE-----GYSGSDLT 436 (502)
Q Consensus 371 aTN~~~-----~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~----~~~~l~~~~l~~la~~t~-----g~s~~dL~ 436 (502)
|||..+ .+++++.|||. .|.|+.|+.+++.+|++.++.. .+..+++..+..++..+. ++.++...
T Consensus 297 at~~~~~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai 375 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAI 375 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHH
T ss_pred CCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHH
Confidence 999887 79999999995 7999999999999999987765 566788888887777554 44555555
Q ss_pred HHHHHHH
Q psy2637 437 NLAKDAA 443 (502)
Q Consensus 437 ~L~~~a~ 443 (502)
.++..|.
T Consensus 376 ~ll~~a~ 382 (758)
T 3pxi_A 376 DLIDEAG 382 (758)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 74
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.66 E-value=2.7e-17 Score=146.41 Aligned_cols=133 Identities=16% Similarity=0.216 Sum_probs=94.4
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHH
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKL 308 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~ 308 (502)
+++|++..++.+.+.+. .....+.+|||+||||||||++|+++|+.+. +|+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~----------~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVE----------AAAKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHH----------HHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHH----------HHhCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 57899999999988873 2234457899999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC-CC----CcHHHH
Q psy2637 309 VRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP-QE----LDEAVL 383 (502)
Q Consensus 309 ~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~-~~----l~~~l~ 383 (502)
..++++.+.. ++|||||+|.+... .+..++..++... ..++++|+|||.+ .. +.+.+.
T Consensus 67 ~~~~~~~a~~---~~l~lDei~~l~~~-----------~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~~L~ 129 (143)
T 3co5_A 67 PMELLQKAEG---GVLYVGDIAQYSRN-----------IQTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEEKLA 129 (143)
T ss_dssp HHHHHHHTTT---SEEEEEECTTCCHH-----------HHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHHHHH
T ss_pred hhhHHHhCCC---CeEEEeChHHCCHH-----------HHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccHHHH
Confidence 3556666543 89999999988432 2333444443221 3458899999864 33 455666
Q ss_pred ccccceeeecCCCH
Q psy2637 384 RRFSKRIYVTLPDS 397 (502)
Q Consensus 384 rRf~~~I~i~~P~~ 397 (502)
.|+. .+.+..|++
T Consensus 130 ~rl~-~~~i~lPpL 142 (143)
T 3co5_A 130 GLFS-ESVVRIPPL 142 (143)
T ss_dssp HHSS-SEEEEECCC
T ss_pred HHhc-CcEEeCCCC
Confidence 7885 677777764
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.65 E-value=9.2e-16 Score=174.23 Aligned_cols=200 Identities=25% Similarity=0.358 Sum_probs=136.2
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc----------cCceEE
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC----------NATFFS 291 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv~ 291 (502)
..+..+++++|++..++.+.+.+.. ....+++|+||||||||++|+++|+.+ +.+++.
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 3466889999999999998887732 234679999999999999999999987 778999
Q ss_pred eeccchh--hhhhhhhHHHHHHHHHHHHhc-CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEE
Q psy2637 292 ISAASLT--SKYVGQGEKLVRALFAMAREL-QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLV 368 (502)
Q Consensus 292 i~~s~l~--~~~~g~~~~~~~~lf~~a~~~-~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~v 368 (502)
++++.+. ..+.|..+..+..++..+... .|+||||||+|.+.+...... .....+.+...+.. ..+.+
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g---~~~~~~~L~~~l~~------~~i~~ 302 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG---AVDAGNMLKPALAR------GELRL 302 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHT------TCCCE
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc---hHHHHHHHHHHHhC------CCeEE
Confidence 9998886 457778888888999888765 678999999999975543211 11122223333321 34778
Q ss_pred EEEcCCCC----CCcHHHHccccceeeecCCCHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHhcC-----CCCHHHH
Q psy2637 369 MGATNRPQ----ELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNK----HGNPLSQLELDAVAKLTE-----GYSGSDL 435 (502)
Q Consensus 369 IaaTN~~~----~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~----~~~~l~~~~l~~la~~t~-----g~s~~dL 435 (502)
|++||.++ .+++++.|||+ .+.++.|+.+++.++++.++.. ++..+++..+..++..+. ++.+...
T Consensus 303 I~at~~~~~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ka 381 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKA 381 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHH
T ss_pred EEecCchHHhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHH
Confidence 88998764 57899999997 6999999999999999877764 466778888888877654 4556666
Q ss_pred HHHHHHHH
Q psy2637 436 TNLAKDAA 443 (502)
Q Consensus 436 ~~L~~~a~ 443 (502)
..++..|.
T Consensus 382 i~lldea~ 389 (854)
T 1qvr_A 382 IDLIDEAA 389 (854)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 76
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1e-15 Score=153.74 Aligned_cols=198 Identities=10% Similarity=0.081 Sum_probs=133.4
Q ss_pred ccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc----------cCceEEeeccchhh
Q psy2637 230 IAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC----------NATFFSISAASLTS 299 (502)
Q Consensus 230 iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv~i~~s~l~~ 299 (502)
+.|.+...+.+...+.... . ...+.+++|+||||||||++++++++++ ...++.+||..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i------~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL------M--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH------H--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHh------c--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 6677777777776662211 0 2457899999999999999999999988 34688999977543
Q ss_pred h----------hh------hhhHHHHHHHHHHH--HhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCC
Q psy2637 300 K----------YV------GQGEKLVRALFAMA--RELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSN 361 (502)
Q Consensus 300 ~----------~~------g~~~~~~~~lf~~a--~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 361 (502)
. +. +.....+..+|... ....+.||+|||+|.+. .+.. +..++.... .
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~------~q~~----L~~l~~~~~----~ 159 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL------SEKI----LQYFEKWIS----S 159 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC------CTHH----HHHHHHHHH----C
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh------cchH----HHHHHhccc----c
Confidence 2 11 22344456666654 34456899999999995 1222 222332221 2
Q ss_pred CCCcEEEEEEcCCCCCC----cHHHHcccc-ceeeecCCCHHHHHHHHHHHHhhcCC-----------------------
Q psy2637 362 SEHRLLVMGATNRPQEL----DEAVLRRFS-KRIYVTLPDSKTRKSLLEKLLNKHGN----------------------- 413 (502)
Q Consensus 362 ~~~~v~vIaaTN~~~~l----~~~l~rRf~-~~I~i~~P~~~er~~il~~~l~~~~~----------------------- 413 (502)
...++.||+++|..+.. ++.+.+||. .+|.|++++.++..+|++..+.....
T Consensus 160 ~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 239 (318)
T 3te6_A 160 KNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQN 239 (318)
T ss_dssp SSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-----
T ss_pred cCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 33568999999987643 445567885 47999999999999999999987421
Q ss_pred ------------CCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHhhhHHhh
Q psy2637 414 ------------PLSQLELDAVAKL---TEGYSGSDLTNLAKDAALGPIREL 450 (502)
Q Consensus 414 ------------~l~~~~l~~la~~---t~g~s~~dL~~L~~~a~~~airel 450 (502)
.+++..++.+|+. ..|..+.+| .+|+.|...+-++.
T Consensus 240 ~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al-~ilr~A~~~ae~e~ 290 (318)
T 3te6_A 240 QKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAF-KICEAAVEISKKDF 290 (318)
T ss_dssp ---CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHH-HHHHHHHHHHHHHH
T ss_pred ccccccccccccccCHHHHHHHHHHHHhhCChHHHHH-HHHHHHHHHHHHHH
Confidence 2477788888874 456555555 35666666665543
No 77
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.64 E-value=7.1e-16 Score=141.20 Aligned_cols=151 Identities=23% Similarity=0.364 Sum_probs=107.8
Q ss_pred CCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc----------cCceEEee
Q psy2637 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC----------NATFFSIS 293 (502)
Q Consensus 224 ~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv~i~ 293 (502)
+..|++++|++...+.+.+.+.. ....+++|+||||||||++|+++++.+ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 44788999999999998888732 235789999999999999999999987 67788888
Q ss_pred ccchhh--hhhhhhHHHHHHHHHHHHhc-CCeEEEEcCCcchhcccc-cChhHHHHHHHHHHHHHhccCCCCCCCcEEEE
Q psy2637 294 AASLTS--KYVGQGEKLVRALFAMAREL-QPSIIFIDEVDSVLSERK-EGEHEASRRLKTEFLLEFDGLHSNSEHRLLVM 369 (502)
Q Consensus 294 ~s~l~~--~~~g~~~~~~~~lf~~a~~~-~p~iLfLDEId~L~~~~~-~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vI 369 (502)
+..+.. .+.+.....+..++..+... .+.+|||||+|.+.+.+. ...... +.+.+...++. .++++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~---~~~~l~~~~~~------~~~~ii 156 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALD---AGNILKPMLAR------GELRCI 156 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCC---THHHHHHHHHT------TCSCEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchH---HHHHHHHHHhc------CCeeEE
Confidence 877653 24455555566777766554 568999999999974432 111111 11122222221 347888
Q ss_pred EEcCCCC-----CCcHHHHccccceeeecCCC
Q psy2637 370 GATNRPQ-----ELDEAVLRRFSKRIYVTLPD 396 (502)
Q Consensus 370 aaTN~~~-----~l~~~l~rRf~~~I~i~~P~ 396 (502)
++||.+. .+++++.+||. .+.++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred EecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 8998764 68999999997 69998885
No 78
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=2.5e-15 Score=152.98 Aligned_cols=195 Identities=14% Similarity=0.215 Sum_probs=133.4
Q ss_pred HhcCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC----------
Q psy2637 218 ILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA---------- 287 (502)
Q Consensus 218 ~~~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~---------- 287 (502)
+.+++.|.+|++++|++.+++.+..++. ..+..+ +++|+||+|+|||++++++++.+..
T Consensus 4 w~~kyrP~~~~~~vg~~~~~~~l~~~~~----------~~~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~ 72 (354)
T 1sxj_E 4 WVDKYRPKSLNALSHNEELTNFLKSLSD----------QPRDLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDV 72 (354)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTT----------CTTCCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----
T ss_pred chhccCCCCHHHhcCCHHHHHHHHHHHh----------hCCCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecc
Confidence 3567889999999999999998887751 111223 3999999999999999999996411
Q ss_pred -------------------ceEEeeccchhhhhhhhhHHHHHHHHHHHH--------------hcCCeEEEEcCCcchhc
Q psy2637 288 -------------------TFFSISAASLTSKYVGQGEKLVRALFAMAR--------------ELQPSIIFIDEVDSVLS 334 (502)
Q Consensus 288 -------------------~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~--------------~~~p~iLfLDEId~L~~ 334 (502)
+++.++++.... .....+...++.+. ...|.+++|||++.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~ 148 (354)
T 1sxj_E 73 RQFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK 148 (354)
T ss_dssp -------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH
T ss_pred eeecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH
Confidence 122222221100 00001233333321 22567999999998622
Q ss_pred ccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCC
Q psy2637 335 ERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNP 414 (502)
Q Consensus 335 ~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~ 414 (502)
..++.++..++.. ..++.+|.+|+.+..+.+.+.+|+ ..+.|++|+.++..+++...+...+..
T Consensus 149 -----------~~~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 149 -----------DAQAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -----------HHHHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred -----------HHHHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 1233444444432 234788888999999999999999 589999999999999999999888888
Q ss_pred CC-HHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy2637 415 LS-QLELDAVAKLTEGYSGSDLTNLAKDAAL 444 (502)
Q Consensus 415 l~-~~~l~~la~~t~g~s~~dL~~L~~~a~~ 444 (502)
++ +..++.++..+.|..+..+. +++.++.
T Consensus 213 ~~~~~~l~~i~~~~~G~~r~a~~-~l~~~~~ 242 (354)
T 1sxj_E 213 LETKDILKRIAQASNGNLRVSLL-MLESMAL 242 (354)
T ss_dssp ECCSHHHHHHHHHHTTCHHHHHH-HHTHHHH
T ss_pred CCcHHHHHHHHHHcCCCHHHHHH-HHHHHHH
Confidence 88 88999999999875554444 4444443
No 79
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=1.1e-14 Score=147.77 Aligned_cols=185 Identities=19% Similarity=0.212 Sum_probs=133.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccC-----ceEEeec
Q psy2637 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA-----TFFSISA 294 (502)
Q Consensus 220 ~~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~i~~ 294 (502)
+.+.|..|++++|++.+++.+...+... . ..+++|+||||||||++|+++++.+.. .+..+++
T Consensus 17 ~k~rp~~~~~~~g~~~~~~~L~~~i~~g-----------~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 17 EKYRPETLDEVYGQNEVITTVRKFVDEG-----------K-LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHTT-----------C-CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHhcC-----------C-CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 3467889999999999999999887321 1 134999999999999999999998732 3556665
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHh------cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEE
Q psy2637 295 ASLTSKYVGQGEKLVRALFAMARE------LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLV 368 (502)
Q Consensus 295 s~l~~~~~g~~~~~~~~lf~~a~~------~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~v 368 (502)
++..+ ...++..+..... ..+.+++|||+|.+... .++.|+..++. ++..+.+
T Consensus 85 ~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~----~~~~~~~ 143 (340)
T 1sxj_C 85 SDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-----------AQNALRRVIER----YTKNTRF 143 (340)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-----------HHHHHHHHHHH----TTTTEEE
T ss_pred ccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHhc----CCCCeEE
Confidence 54211 1122222322221 13579999999988321 23345555543 2345778
Q ss_pred EEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHH
Q psy2637 369 MGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNL 438 (502)
Q Consensus 369 IaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L 438 (502)
|.+||.+..+.+++.+|+. .+.+..++.++..+.+...+...+..+++..+..++..+.|.....+..+
T Consensus 144 il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l 212 (340)
T 1sxj_C 144 CVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVL 212 (340)
T ss_dssp EEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHT
T ss_pred EEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 8889999999999999996 89999999999999999998877778888888999988877555444433
No 80
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.59 E-value=2.1e-15 Score=160.48 Aligned_cols=196 Identities=15% Similarity=0.175 Sum_probs=120.6
Q ss_pred cccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHcc--CceEEeeccc-hhhhhhhhh
Q psy2637 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN--ATFFSISAAS-LTSKYVGQG 305 (502)
Q Consensus 229 ~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~--~~fv~i~~s~-l~~~~~g~~ 305 (502)
.++|++.+++.+...+. .+.++||+||||||||++|+++|+.++ .+|..++|.- ..+...|..
T Consensus 23 ~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp TCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 58999999988877762 246899999999999999999999884 4666665542 122222211
Q ss_pred H--H-HHHHHHHHHH-hc--CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc-------cCCCCCCCcEEEEEEc
Q psy2637 306 E--K-LVRALFAMAR-EL--QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD-------GLHSNSEHRLLVMGAT 372 (502)
Q Consensus 306 ~--~-~~~~lf~~a~-~~--~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~-------g~~~~~~~~v~vIaaT 372 (502)
. . .-.+.+..+. +. .++|||||||+.+. ...+..|+..++ |.....+.++ +|+||
T Consensus 89 ~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~-----------~~~q~~LL~~lee~~v~i~G~~~~~~~~~-iI~AT 156 (500)
T 3nbx_X 89 SIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERQFRNGAHVEKIPMRL-LVAAS 156 (500)
T ss_dssp C----------CBCCTTSGGGCSEEEEESGGGCC-----------HHHHHHHHHHHHSSEEECSSSEEECCCCE-EEEEE
T ss_pred cHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc-----------HHHHHHHHHHHHHHhccCCCCcCCcchhh-hhhcc
Confidence 0 0 0122232111 11 35799999998763 234455666554 2222223334 56777
Q ss_pred CCC-C--CCcHHHHccccceeeecCCCH-HHHHHHHHHHHhh-----------------------cCCCCCHHHHHHHHH
Q psy2637 373 NRP-Q--ELDEAVLRRFSKRIYVTLPDS-KTRKSLLEKLLNK-----------------------HGNPLSQLELDAVAK 425 (502)
Q Consensus 373 N~~-~--~l~~~l~rRf~~~I~i~~P~~-~er~~il~~~l~~-----------------------~~~~l~~~~l~~la~ 425 (502)
|.. + ...+++++||...+.+++|+. +++..|+...... ....+++..++.++.
T Consensus 157 N~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~ 236 (500)
T 3nbx_X 157 NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFM 236 (500)
T ss_dssp SSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHH
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHH
Confidence 753 2 345799999987899999987 6778887654321 133455655565655
Q ss_pred hc---------CCCCHHHHHHHHHHHHhhhHHhh
Q psy2637 426 LT---------EGYSGSDLTNLAKDAALGPIREL 450 (502)
Q Consensus 426 ~t---------~g~s~~dL~~L~~~a~~~airel 450 (502)
.. .|.+++.+..+++.|...|.-+.
T Consensus 237 l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g 270 (500)
T 3nbx_X 237 LRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG 270 (500)
T ss_dssp HHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcC
Confidence 44 36788887777776655554433
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.59 E-value=7e-16 Score=168.08 Aligned_cols=235 Identities=20% Similarity=0.214 Sum_probs=131.0
Q ss_pred ccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEe----eccchhhhhh-
Q psy2637 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSI----SAASLTSKYV- 302 (502)
Q Consensus 228 ~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i----~~s~l~~~~~- 302 (502)
..|+|++.+++.+...+..... ............++||+||||||||++|+++|+.++..++.. +++++.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~-~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVP-KVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCC-EETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCCCc-ccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 3689999988877544321100 000000012334899999999999999999999987655442 3333332211
Q ss_pred ----hhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhcc---------CCCCCCCcEEEE
Q psy2637 303 ----GQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG---------LHSNSEHRLLVM 369 (502)
Q Consensus 303 ----g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g---------~~~~~~~~v~vI 369 (502)
|.... ..+.+..|.+ +|+||||||.+.+. .+..|+..|+. .....+.+++||
T Consensus 374 ~~~~g~~~~-~~G~l~~A~~---gil~IDEid~l~~~-----------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 374 EKGTGEYYL-EAGALVLADG---GIAVIDEIDKMRDE-----------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp GGGTSSCSE-EECHHHHHSS---SEECCTTTTCCCSH-----------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred ccccccccc-cCCeeEecCC---CcEEeehhhhCCHh-----------HhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 11100 1233444433 89999999988432 23445555542 222234568999
Q ss_pred EEcCCCC-------------CCcHHHHcccccee-eecCCCHHHHHHHHHHHHhhcC-----CCCCHHHHHHHHHh----
Q psy2637 370 GATNRPQ-------------ELDEAVLRRFSKRI-YVTLPDSKTRKSLLEKLLNKHG-----NPLSQLELDAVAKL---- 426 (502)
Q Consensus 370 aaTN~~~-------------~l~~~l~rRf~~~I-~i~~P~~~er~~il~~~l~~~~-----~~l~~~~l~~la~~---- 426 (502)
||||+.. .+++++++||+..+ ..+.|+.+ ...+.++.+..+. ..++...+..+...
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~ 517 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKY 517 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHh
Confidence 9999875 89999999997544 44555555 7777777765432 11222233322211
Q ss_pred -cCCCCHHHHHHHHHH--------------HHhhhHHhhhhhhhhh---hcccCCCcccHHHHHHHHHhhc
Q psy2637 427 -TEGYSGSDLTNLAKD--------------AALGPIRELNADQVIK---VDLKSVRNISYRDFLESLKRIR 479 (502)
Q Consensus 427 -t~g~s~~dL~~L~~~--------------a~~~airel~~~~~~~---v~~~~~~~It~~d~~~al~~~~ 479 (502)
...++.+....|..+ .+....|.+.+....+ ..+.....|+.+|+.+|+.-+.
T Consensus 518 ~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 518 VTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMR 588 (595)
T ss_dssp HCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 113344334444433 2333334333322211 1233456799999999887654
No 82
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.53 E-value=1.9e-14 Score=157.39 Aligned_cols=230 Identities=17% Similarity=0.293 Sum_probs=140.3
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc---eEEeeccch
Q psy2637 221 GGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT---FFSISAASL 297 (502)
Q Consensus 221 ~~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~---fv~i~~s~l 297 (502)
..++..|++++|++.+++.+...+. .+.+++|+||||||||++|+++|..+... .+.+.+...
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~--------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN--------------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred cccccccceEECchhhHhhcccccc--------------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 4567789999999999999888873 23689999999999999999999987422 122211110
Q ss_pred h--------------h-----------------------------------------------------hhhhhh-----
Q psy2637 298 T--------------S-----------------------------------------------------KYVGQG----- 305 (502)
Q Consensus 298 ~--------------~-----------------------------------------------------~~~g~~----- 305 (502)
. . ...|..
T Consensus 100 ~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~ 179 (604)
T 3k1j_A 100 DENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPF 179 (604)
T ss_dssp CTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC
T ss_pred cccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechh
Confidence 0 0 000000
Q ss_pred ----------HHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc-------cC----------
Q psy2637 306 ----------EKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD-------GL---------- 358 (502)
Q Consensus 306 ----------~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~-------g~---------- 358 (502)
.....+.+.. ..+++|||||++.+.+ ..+..|+..++ +.
T Consensus 180 ~~g~~~~g~~~~i~~g~~~~---a~~gvL~LDEi~~l~~-----------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~ 245 (604)
T 3k1j_A 180 QSGGLGTPAHERVEPGMIHR---AHKGVLFIDEIATLSL-----------KMQQSLLTAMQEKKFPITGQSEMSSGAMVR 245 (604)
T ss_dssp ----CCCCGGGGEECCHHHH---TTTSEEEETTGGGSCH-----------HHHHHHHHHHHHSEECCBCSCTTSGGGGCB
T ss_pred hcCCccccccccccCceeee---cCCCEEEEechhhCCH-----------HHHHHHHHHHHcCcEEecccccccccccCC
Confidence 0000112222 2458999999998832 23334444443 11
Q ss_pred CCCCCCcEEEEEEcCCC--CCCcHHHHcccc---ceeeecC--C-CHHHHHHHHHHHHhhc-----CCCCCHHHHHHHHH
Q psy2637 359 HSNSEHRLLVMGATNRP--QELDEAVLRRFS---KRIYVTL--P-DSKTRKSLLEKLLNKH-----GNPLSQLELDAVAK 425 (502)
Q Consensus 359 ~~~~~~~v~vIaaTN~~--~~l~~~l~rRf~---~~I~i~~--P-~~~er~~il~~~l~~~-----~~~l~~~~l~~la~ 425 (502)
....+.+++||+|||+. +.+++++++||+ ..+.++. + ..+....++..+.... ...+++..+..+..
T Consensus 246 ~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~ 325 (604)
T 3k1j_A 246 TEPVPCDFVLVAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVR 325 (604)
T ss_dssp CSCEECCCEEEEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHH
T ss_pred CCccceeEEEEEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHH
Confidence 11223578999999986 679999999996 2333332 1 4555666665554432 23567777777766
Q ss_pred hc---CCC------CHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhcCCCCHHHHHHHH
Q psy2637 426 LT---EGY------SGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYE 491 (502)
Q Consensus 426 ~t---~g~------s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~~s~~~~~l~~~~ 491 (502)
.. .|. +.+++.++++.|...+..+ ....|+.+|+.+|+... ..+....++.|.
T Consensus 326 ~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~------------~~~~I~~edv~~A~~~~-~~i~~~~~e~~l 387 (604)
T 3k1j_A 326 EAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKK------------GKKYVEREDVIEAVKMA-KPLEKQLADWYI 387 (604)
T ss_dssp HHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHT------------TCSSBCHHHHHHHHHHT-CCHHHHHHHHHH
T ss_pred HHhhhhccccccccCHHHHHHHHHHHHHHHHhc------------CcccccHHHHHHHHHhh-hhhHHHHHHHHh
Confidence 44 442 6788888888775444332 24579999999999643 223344444443
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.42 E-value=2e-12 Score=131.06 Aligned_cols=169 Identities=17% Similarity=0.214 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCc------------------------
Q psy2637 233 QEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT------------------------ 288 (502)
Q Consensus 233 ~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~------------------------ 288 (502)
++++.+.+...+... ..+..+||+||+|+|||++|+++|+.+...
T Consensus 7 ~~~~~~~l~~~i~~~-----------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG-----------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHHTT-----------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHcC-----------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 456677777766322 234669999999999999999999987432
Q ss_pred eEEeeccchhhhhhhhhHHHHHHHHHHHHh----cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCC
Q psy2637 289 FFSISAASLTSKYVGQGEKLVRALFAMARE----LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEH 364 (502)
Q Consensus 289 fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~----~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 364 (502)
++.++..+- + .+.....++.+++.+.. ..+.|++|||+|.|.. ...+.|+..++. ++.
T Consensus 76 ~~~~~~~~~-~--~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEe----p~~ 137 (334)
T 1a5t_A 76 YYTLAPEKG-K--NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEE----PPA 137 (334)
T ss_dssp EEEECCCTT-C--SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTS----CCT
T ss_pred EEEEecccc-C--CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcC----CCC
Confidence 222222100 0 01122334566665543 2357999999998832 134556666652 445
Q ss_pred cEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHH
Q psy2637 365 RLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLT 436 (502)
Q Consensus 365 ~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~ 436 (502)
++++|.+||.++.+.+.+++|+. .+.|++|+.++..+++...+ .+++..+..++..+.|..+..+.
T Consensus 138 ~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 138 ETWFFLATREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHH
T ss_pred CeEEEEEeCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 68888899999999999999996 89999999999998887654 46788888899988886554443
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.39 E-value=9.3e-12 Score=128.67 Aligned_cols=210 Identities=15% Similarity=0.113 Sum_probs=130.2
Q ss_pred CcccccChHHHHHHHHHHH-hCcCCChhhhhcCCCCCcceEE--ecCCCCcHHHHHHHHHHHc---------cCceEEee
Q psy2637 226 QWQDIAGQEVAKQALHEMV-ILPSLRPELFTGLRTPSRGLLL--FGPPGNGKTMLARAVATAC---------NATFFSIS 293 (502)
Q Consensus 226 ~~~~iiG~~~~~~~l~~~v-~~~~~~~~l~~~~~~~~~~vLL--~GppGtGKT~lAraia~~~---------~~~fv~i~ 293 (502)
..+.++|.+...+.+.+.+ .... .+....+..++| +||+|+|||++++.+++.. +.+++.++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~------~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLL------SGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHH------TSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHh------cCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 3478999999888888776 3211 111123567999 9999999999999999876 34677888
Q ss_pred ccchhhh------hh----------hh-hHHHHHHHHHHHH-hcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHh
Q psy2637 294 AASLTSK------YV----------GQ-GEKLVRALFAMAR-ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEF 355 (502)
Q Consensus 294 ~s~l~~~------~~----------g~-~~~~~~~lf~~a~-~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l 355 (502)
|...... .. +. .......+..... ...|.+|+|||++.+...... .. ..+..++..+
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-~~----~~l~~l~~~~ 168 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-AA----EDLYTLLRVH 168 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-CH----HHHHHHHTHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-ch----HHHHHHHHHH
Confidence 7432210 00 10 1111222222222 235789999999988532110 11 1222233333
Q ss_pred ccCCCCC-CCcEEEEEEcCCCC---CCc---HHHHccccceeeecCCCHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHh
Q psy2637 356 DGLHSNS-EHRLLVMGATNRPQ---ELD---EAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHG--NPLSQLELDAVAKL 426 (502)
Q Consensus 356 ~g~~~~~-~~~v~vIaaTN~~~---~l~---~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~--~~l~~~~l~~la~~ 426 (502)
....... ..++.+|++|+.++ .++ +.+.+++...+.+++++.++..+++...+...+ ..+++..+..++..
T Consensus 169 ~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 248 (412)
T 1w5s_A 169 EEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDV 248 (412)
T ss_dssp HHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHH
T ss_pred HhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 2221001 15688888887654 344 566677765689999999999999988776432 24678888999999
Q ss_pred cC------CCCHHHHHHHHHHHHhhhH
Q psy2637 427 TE------GYSGSDLTNLAKDAALGPI 447 (502)
Q Consensus 427 t~------g~s~~dL~~L~~~a~~~ai 447 (502)
+. |. ++.+..++..++..+.
T Consensus 249 ~~~~~~~~G~-p~~~~~l~~~a~~~a~ 274 (412)
T 1w5s_A 249 YGEDKGGDGS-ARRAIVALKMACEMAE 274 (412)
T ss_dssp HCGGGTSCCC-HHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCc-HHHHHHHHHHHHHHHH
Confidence 98 74 5566667776665443
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=1.6e-11 Score=122.92 Aligned_cols=163 Identities=13% Similarity=0.141 Sum_probs=112.5
Q ss_pred ChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc------cCceEEeeccchhhhhhhhh
Q psy2637 232 GQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC------NATFFSISAASLTSKYVGQG 305 (502)
Q Consensus 232 G~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~------~~~fv~i~~s~l~~~~~g~~ 305 (502)
|++++++.+...+... . .+++||+||||+|||++|+++++.+ ...++.++++.- ...
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 6777888888887322 1 4689999999999999999999874 345667765420 112
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHH
Q psy2637 306 EKLVRALFAMAREL----QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEA 381 (502)
Q Consensus 306 ~~~~~~lf~~a~~~----~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~ 381 (502)
-..++.+++.+... ...|++|||+|.|.. ..++.|+..++ .++..+++|.+|+.++.+.++
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~-----------~a~naLLk~LE----ep~~~t~fIl~t~~~~kl~~t 128 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-----------QAANAFLKALE----EPPEYAVIVLNTRRWHYLLPT 128 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-----------HHHHHTHHHHH----SCCTTEEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH-----------HHHHHHHHHHh----CCCCCeEEEEEECChHhChHH
Confidence 23346677666532 236999999998832 23456777665 345568888888889999999
Q ss_pred HHccccceeeecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHH
Q psy2637 382 VLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNL 438 (502)
Q Consensus 382 l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L 438 (502)
+++| ++.|++|+.++..+.+...+ + +++..+ ....|..+.++..+
T Consensus 129 I~SR---~~~f~~l~~~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l 173 (305)
T 2gno_A 129 IKSR---VFRVVVNVPKEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAY 173 (305)
T ss_dssp HHTT---SEEEECCCCHHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHH
T ss_pred HHce---eEeCCCCCHHHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHH
Confidence 9999 79999999999999988776 1 333322 34566666665544
No 86
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.20 E-value=6.1e-11 Score=123.44 Aligned_cols=212 Identities=16% Similarity=0.166 Sum_probs=122.3
Q ss_pred ccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHH-HHHccCceEE-eecc---chhhhh---
Q psy2637 230 IAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAV-ATACNATFFS-ISAA---SLTSKY--- 301 (502)
Q Consensus 230 iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lArai-a~~~~~~fv~-i~~s---~l~~~~--- 301 (502)
|.|++.+++.+.-.+...... .....+|||.|+||| ||++|+++ ++.+....+. ..++ .+....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES
T ss_pred cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC
Confidence 899999988887766222100 122348999999999 99999999 7766432221 1111 111110
Q ss_pred hhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhc-------cCCCCCCCcEEEEEEcCC
Q psy2637 302 VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFD-------GLHSNSEHRLLVMGATNR 374 (502)
Q Consensus 302 ~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~-------g~~~~~~~~v~vIaaTN~ 374 (502)
.| . ....+.+..|.+ +++|||||+.+.++ .+..|+..|+ |. ..+.++.||||+|+
T Consensus 287 tG-~-~~~~G~l~LAdg---Gvl~lDEIn~~~~~-----------~qsaLlEaMEe~~VtI~G~--~lparf~VIAA~NP 348 (506)
T 3f8t_A 287 RG-W-ALRAGAAVLADG---GILAVDHLEGAPEP-----------HRWALMEAMDKGTVTVDGI--ALNARCAVLAAINP 348 (506)
T ss_dssp SS-E-EEEECHHHHTTT---SEEEEECCTTCCHH-----------HHHHHHHHHHHSEEEETTE--EEECCCEEEEEECC
T ss_pred CC-c-ccCCCeeEEcCC---CeeehHhhhhCCHH-----------HHHHHHHHHhCCcEEECCE--EcCCCeEEEEEeCc
Confidence 01 0 011244455544 89999999988332 3334444443 33 33467899999998
Q ss_pred CC-----------CCcHHHHcccccee-eecCCCHHHHH---------HHHHHH---Hh--hcCCCCCHHHHHHHHH---
Q psy2637 375 PQ-----------ELDEAVLRRFSKRI-YVTLPDSKTRK---------SLLEKL---LN--KHGNPLSQLELDAVAK--- 425 (502)
Q Consensus 375 ~~-----------~l~~~l~rRf~~~I-~i~~P~~~er~---------~il~~~---l~--~~~~~l~~~~l~~la~--- 425 (502)
.+ .|++++++||+..+ .+..|+.++-. +.++.+ ++ .....+++...+.+..
T Consensus 349 ~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~ 428 (506)
T 3f8t_A 349 GEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYE 428 (506)
T ss_dssp CC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHH
T ss_pred ccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHH
Confidence 64 78999999997433 34445433211 222222 22 1133455543322221
Q ss_pred --------------hcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHhhc
Q psy2637 426 --------------LTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIR 479 (502)
Q Consensus 426 --------------~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~~~ 479 (502)
..-|.|++.+..|++-|...|.-++ ...++.+|+..|+.-+.
T Consensus 429 ~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g------------R~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 429 TRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL------------SDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT------------CSEECHHHHHHHHHHHH
T ss_pred HHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcC------------cCCCCHHHHHHHHHHHH
Confidence 1236788888888887766555544 46799999999987554
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.09 E-value=3.1e-10 Score=139.92 Aligned_cols=141 Identities=21% Similarity=0.390 Sum_probs=94.6
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc-cCceEEeeccchhhhhhhhhHHHHHHHHHHHH---------------hcCCeEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC-NATFFSISAASLTSKYVGQGEKLVRALFAMAR---------------ELQPSII 324 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~-~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~---------------~~~p~iL 324 (502)
+.++||+||||||||++|+.+.... +.+++.++++...+. ..+...++... ..+++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 5799999999999999995555444 677888888765532 12233333321 1234699
Q ss_pred EEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCC------CcEEEEEEcCCCC-----CCcHHHHccccceeeec
Q psy2637 325 FIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSE------HRLLVMGATNRPQ-----ELDEAVLRRFSKRIYVT 393 (502)
Q Consensus 325 fLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~------~~v~vIaaTN~~~-----~l~~~l~rRf~~~I~i~ 393 (502)
||||+|....++.+.+ ....++.+++ ...|...... .++.+|||||++. .+++++.||| .++.++
T Consensus 1341 FiDEinmp~~d~yg~q--~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~ 1416 (2695)
T 4akg_A 1341 FCDEINLPKLDKYGSQ--NVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLG 1416 (2695)
T ss_dssp EEETTTCSCCCSSSCC--HHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECC
T ss_pred EecccccccccccCch--hHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeC
Confidence 9999986543332221 1222333332 2223322111 3589999999984 8999999999 599999
Q ss_pred CCCHHHHHHHHHHHHhhc
Q psy2637 394 LPDSKTRKSLLEKLLNKH 411 (502)
Q Consensus 394 ~P~~~er~~il~~~l~~~ 411 (502)
.|+.+++..|+..++..+
T Consensus 1417 ~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp CCTTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988654
No 88
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.08 E-value=6.9e-09 Score=104.22 Aligned_cols=194 Identities=20% Similarity=0.219 Sum_probs=119.5
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh---
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT--- 298 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~--- 298 (502)
.++.....++|.+...+.+.+++.. +..++|+||+|+|||++++.+++..+ ++.++|....
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 3455567899999999999888721 26799999999999999999999875 6666665431
Q ss_pred -----hh----hh--------------------h--------hhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChh
Q psy2637 299 -----SK----YV--------------------G--------QGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEH 341 (502)
Q Consensus 299 -----~~----~~--------------------g--------~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~ 341 (502)
.. +. + .....+..+.+.+....|.+|+|||++.+.......
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~-- 147 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRG-- 147 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTT--
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccc--
Confidence 00 00 0 011111222222222348899999999885310000
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCC---------cHHHHccccceeeecCCCHHHHHHHHHHHHhhcC
Q psy2637 342 EASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQEL---------DEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHG 412 (502)
Q Consensus 342 ~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l---------~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~ 412 (502)
.......+...++.. .++.+|.|+.....+ ...+..|+...+.+.+.+.++..+++...+...+
T Consensus 148 --~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 148 --GKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp --THHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred --hhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 111111121222211 246666665432111 1223335545789999999999999998887777
Q ss_pred CCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2637 413 NPLSQLELDAVAKLTEGYSGSDLTNLAKD 441 (502)
Q Consensus 413 ~~l~~~~l~~la~~t~g~s~~dL~~L~~~ 441 (502)
..+++..+..+...+.|++. .+..++..
T Consensus 221 ~~~~~~~~~~i~~~tgG~P~-~l~~~~~~ 248 (350)
T 2qen_A 221 LDVPENEIEEAVELLDGIPG-WLVVFGVE 248 (350)
T ss_dssp CCCCHHHHHHHHHHHTTCHH-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence 77788888999999998654 56555543
No 89
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.07 E-value=1.6e-10 Score=136.98 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=102.5
Q ss_pred CCCCcccccChHHHHHHHHHHHhCcCCC----------hhhhhc-----------------CCCC--CcceEEecCCCCc
Q psy2637 223 SPVQWQDIAGQEVAKQALHEMVILPSLR----------PELFTG-----------------LRTP--SRGLLLFGPPGNG 273 (502)
Q Consensus 223 ~~~~~~~iiG~~~~~~~l~~~v~~~~~~----------~~l~~~-----------------~~~~--~~~vLL~GppGtG 273 (502)
+.+.|.++.|.+.+++.+.+.+.++... ++.+.. .+.+ ++.+|++||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 3468999999999999999988877622 333333 1223 3449999999999
Q ss_pred HHHHHHHHHHHc---cCceEEeeccchh------------hhhhhh----hHHHHHHHHHHHHhcCCeEEEEcCCcchhc
Q psy2637 274 KTMLARAVATAC---NATFFSISAASLT------------SKYVGQ----GEKLVRALFAMARELQPSIIFIDEVDSVLS 334 (502)
Q Consensus 274 KT~lAraia~~~---~~~fv~i~~s~l~------------~~~~g~----~~~~~~~lf~~a~~~~p~iLfLDEId~L~~ 334 (502)
||++|++++.+. +.|-+.|+..+.. +++.++ .++.+..++..|+...|++||+|++++|.+
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999987 4454555554433 445556 788888899889999999999999999988
Q ss_pred ccc------cChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 335 ERK------EGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 335 ~~~------~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
.+. ..+.....|++++++..+++..... +|.|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~--~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS--NTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHT--TCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccC--CeEEE-Eeccc
Confidence 832 1123566778889999998865543 36666 67653
No 90
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.02 E-value=2.3e-08 Score=100.60 Aligned_cols=189 Identities=13% Similarity=0.137 Sum_probs=115.7
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh---
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT--- 298 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~--- 298 (502)
.++.....++|.+...+.+.+ + .. ..++|+||+|+|||++++.+++..+..++.+++....
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l----------~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-L----------RA-----PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-T----------CS-----SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCCHHHhcChHHHHHHHHH-h----------cC-----CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 344566789999988888877 6 11 4799999999999999999999887667777776430
Q ss_pred ----hhhhhh---------------------------------------hHHHHHHHHHHHHhc--CCeEEEEcCCcchh
Q psy2637 299 ----SKYVGQ---------------------------------------GEKLVRALFAMAREL--QPSIIFIDEVDSVL 333 (502)
Q Consensus 299 ----~~~~g~---------------------------------------~~~~~~~lf~~a~~~--~p~iLfLDEId~L~ 333 (502)
..+... ....+..+++..... .|.+|+|||++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 000000 011233444444432 37899999999885
Q ss_pred cccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCC---------cHHHHccccceeeecCCCHHHHHHHH
Q psy2637 334 SERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQEL---------DEAVLRRFSKRIYVTLPDSKTRKSLL 404 (502)
Q Consensus 334 ~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l---------~~~l~rRf~~~I~i~~P~~~er~~il 404 (502)
....... ...+..+. +.. .++.+|.+++....+ ...+..|+...+.+.+.+.++..+++
T Consensus 151 ~~~~~~~----~~~l~~~~---~~~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 151 KLRGVNL----LPALAYAY---DNL-----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp GCTTCCC----HHHHHHHH---HHC-----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred ccCchhH----HHHHHHHH---HcC-----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 4211111 11111121 111 236666666543211 11233355457899999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy2637 405 EKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKD 441 (502)
Q Consensus 405 ~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~ 441 (502)
...+...+...++. ..+...+.|++. .+..++..
T Consensus 219 ~~~~~~~~~~~~~~--~~i~~~t~G~P~-~l~~~~~~ 252 (357)
T 2fna_A 219 RRGFQEADIDFKDY--EVVYEKIGGIPG-WLTYFGFI 252 (357)
T ss_dssp HHHHHHHTCCCCCH--HHHHHHHCSCHH-HHHHHHHH
T ss_pred HHHHHHcCCCCCcH--HHHHHHhCCCHH-HHHHHHHH
Confidence 98776555544433 778888888654 45555443
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.00 E-value=1.5e-09 Score=99.33 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=62.4
Q ss_pred CCCCCcccccC----hHHHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHc----cCceEEe
Q psy2637 222 GSPVQWQDIAG----QEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATAC----NATFFSI 292 (502)
Q Consensus 222 ~~~~~~~~iiG----~~~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~i 292 (502)
..+.+|+++++ +..+.+.+.+++. .+. ..+.+++|+||+|||||+++++++..+ +..++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVH----------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHH----------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHH----------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 45568888886 4455555555552 222 235789999999999999999999877 5566777
Q ss_pred eccchhhhhhhhhHHH-HHHHHHHHHhcCCeEEEEcCCcch
Q psy2637 293 SAASLTSKYVGQGEKL-VRALFAMARELQPSIIFIDEVDSV 332 (502)
Q Consensus 293 ~~s~l~~~~~g~~~~~-~~~lf~~a~~~~p~iLfLDEId~L 332 (502)
++.++...+....... ...++.. -..|.+|+|||++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred EHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 7766654332211100 0011222 125789999999854
No 92
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.92 E-value=1.7e-09 Score=87.65 Aligned_cols=86 Identities=17% Similarity=0.308 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHH
Q psy2637 396 DSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESL 475 (502)
Q Consensus 396 ~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al 475 (502)
+.++|.+|++.++.+.... .+.+++.||+.|+||||+||.++|++|.+.++++. ...|+.+||..|+
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~------------~~~i~~~df~~Al 68 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR------------RKVATEKDFLKAV 68 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS------------CSSBCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc------------cccCCHHHHHHHH
Confidence 5678999999999876543 56789999999999999999999999999999985 3569999999999
Q ss_pred HhhcCCCC-HHHHHHHHHHH
Q psy2637 476 KRIRRSVS-PSSLIQYEAWN 494 (502)
Q Consensus 476 ~~~~~s~~-~~~l~~~~~w~ 494 (502)
+.+.++.. .+....|..|+
T Consensus 69 ~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 69 DKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHHTC---------------
T ss_pred HHHhcCcccccchhHHhccC
Confidence 99998875 45688888885
No 93
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.90 E-value=1.8e-09 Score=86.43 Aligned_cols=82 Identities=15% Similarity=0.306 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHH
Q psy2637 396 DSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESL 475 (502)
Q Consensus 396 ~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al 475 (502)
+.++|.+||+.++...... .+.+++.++..++||||+||..+|++|+..++++. ...|+.+||..|+
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------~~~i~~~df~~Al 68 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVREN------------RYIVLAKDFEKAY 68 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC------------CSSBCHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------cCCcCHHHHHHHH
Confidence 6789999999999876543 56789999999999999999999999999998875 3579999999999
Q ss_pred HhhcCCCCHHHHHHHH
Q psy2637 476 KRIRRSVSPSSLIQYE 491 (502)
Q Consensus 476 ~~~~~s~~~~~l~~~~ 491 (502)
+.++|+++ ++++.|+
T Consensus 69 ~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 69 KTVIKKDE-QEHEFYK 83 (83)
T ss_dssp HHHCC-----------
T ss_pred HHHccCch-HHHHhcC
Confidence 99999988 7777663
No 94
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.84 E-value=1.2e-08 Score=95.03 Aligned_cols=99 Identities=17% Similarity=0.221 Sum_probs=61.3
Q ss_pred CCCcccccChHH----HHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccc
Q psy2637 224 PVQWQDIAGQEV----AKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAAS 296 (502)
Q Consensus 224 ~~~~~~iiG~~~----~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~ 296 (502)
+.+|+++++.+. +.+.+..++.... -...+.+++|+||||||||++|+++++.+ +.+++.+++.+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYE--------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCC--------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhh--------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 457888887543 3344444442110 00123789999999999999999999988 56788888877
Q ss_pred hhhhhhhhhH-HHHHHHHHHHHhcCCeEEEEcCCcch
Q psy2637 297 LTSKYVGQGE-KLVRALFAMARELQPSIIFIDEVDSV 332 (502)
Q Consensus 297 l~~~~~g~~~-~~~~~lf~~a~~~~p~iLfLDEId~L 332 (502)
+...+..... .....++.... .+.+|+|||++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 93 LFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred HHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 6544322110 00122233322 2369999999765
No 95
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.83 E-value=3.7e-09 Score=85.27 Aligned_cols=78 Identities=19% Similarity=0.336 Sum_probs=68.3
Q ss_pred eecCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHH
Q psy2637 391 YVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRD 470 (502)
Q Consensus 391 ~i~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d 470 (502)
.-.+|+.++|.+||+.++.+.... .+.+++.||+.|+||||+||.++|++|.+.++++. ...|+.+|
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~------------~~~I~~~d 73 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------RVHVTQED 73 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT------------CSEECHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc------------CCCCCHHH
Confidence 346899999999999999876543 46789999999999999999999999999999985 35799999
Q ss_pred HHHHHHhhcCC
Q psy2637 471 FLESLKRIRRS 481 (502)
Q Consensus 471 ~~~al~~~~~s 481 (502)
|..|++.+.|.
T Consensus 74 f~~Al~~v~p~ 84 (86)
T 2krk_A 74 FEMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHccC
Confidence 99999998774
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.81 E-value=8.1e-09 Score=92.11 Aligned_cols=107 Identities=19% Similarity=0.294 Sum_probs=65.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhccc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSER 336 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~ 336 (502)
++..++|+||+|+|||+++++++... +...+.++..++... +...+|.+|+|||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 45789999999999999999999987 555777777665432 012356899999998763221
Q ss_pred ccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcC-CCCCCc--HHHHccccceeeecC
Q psy2637 337 KEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATN-RPQELD--EAVLRRFSKRIYVTL 394 (502)
Q Consensus 337 ~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN-~~~~l~--~~l~rRf~~~I~i~~ 394 (502)
.+ .+..++..+ .... ..++|.||| .+..+. +.+.+|+.....+.+
T Consensus 100 ----~~----~l~~li~~~---~~~g--~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 100 ----QA----LLFSIFNRF---RNSG--KGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp ----HH----HHHHHHHHH---HHHT--CCEEEEEESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred ----HH----HHHHHHHHH---HHcC--CcEEEEECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 11 122222222 1111 122344555 454332 889999876555543
No 97
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.79 E-value=1.1e-08 Score=80.77 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=66.0
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHH
Q psy2637 393 TLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFL 472 (502)
Q Consensus 393 ~~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~ 472 (502)
++|+.++|.+||+.++...... .+.++..+++.++||||+||..+|++|+..++++. ...|+.+||.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------~~~i~~~d~~ 67 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------RVHVTQEDFE 67 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------CSEECHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------------CCCCCHHHHH
Confidence 5899999999999999876542 56789999999999999999999999999999874 3579999999
Q ss_pred HHHHhhcC
Q psy2637 473 ESLKRIRR 480 (502)
Q Consensus 473 ~al~~~~~ 480 (502)
.|++.+..
T Consensus 68 ~Al~~v~~ 75 (78)
T 3kw6_A 68 MAVAKVMQ 75 (78)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99988754
No 98
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.70 E-value=1.4e-08 Score=94.98 Aligned_cols=128 Identities=17% Similarity=0.201 Sum_probs=77.1
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc--------c-CceEEeeccchhhhhh----------hhhHH--HHHHHHHHH--Hh
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC--------N-ATFFSISAASLTSKYV----------GQGEK--LVRALFAMA--RE 318 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~--------~-~~fv~i~~s~l~~~~~----------g~~~~--~~~~lf~~a--~~ 318 (502)
...|++|+||||||++|...+... + .+++..++.++..... ..... ....+++.+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 467899999999999998865443 3 6666666655432211 11000 001233321 12
Q ss_pred cCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHH
Q psy2637 319 LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSK 398 (502)
Q Consensus 319 ~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~ 398 (502)
..+++|+|||++.+.+.+.... +.. .++..+... ....+-||.+|+.+..++..+++|+...+++..|...
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~-e~~-----rll~~l~~~---r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGS-KIP-----ENVQWLNTH---RHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMG 156 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTC-CCC-----HHHHGGGGT---TTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSSC
T ss_pred cCceEEEEEChhhhccCccccc-hhH-----HHHHHHHhc---CcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcccC
Confidence 2457999999999976542211 111 133333322 1223566777888999999999999888888876443
No 99
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=2.2e-07 Score=77.58 Aligned_cols=83 Identities=36% Similarity=0.619 Sum_probs=75.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHHHHHHHHhHhhhcc--CChhHHHHHHHHHHHHHHHHHH
Q psy2637 119 DTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNCYY--GSGEKWERAQRLQEKMKNNLKM 196 (502)
Q Consensus 119 ~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~d~l~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 196 (502)
-+.++.|+..|.+|+.+|..|++.|| .|+.+.|+++|++|+.+|.+.+.+.+.. ...+.|+++++++.+++.++..
T Consensus 9 ~~~l~~ik~~h~~AF~~Is~AL~~DE--~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~ 86 (116)
T 2dl1_A 9 PAEIKIIREAYKKAFLFVNKGLNTDE--LGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQN 86 (116)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh--cCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999998887 5999999999999999999999998753 7889999999999999999999
Q ss_pred HHHHhhh
Q psy2637 197 AKERLSI 203 (502)
Q Consensus 197 ~~~~~~~ 203 (502)
+.+++..
T Consensus 87 v~~RL~~ 93 (116)
T 2dl1_A 87 VRTRLEI 93 (116)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888743
No 100
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=98.60 E-value=2.6e-07 Score=73.50 Aligned_cols=81 Identities=54% Similarity=0.833 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhc-cCCchHHHHHHHHHHHHHHHHhHhhhccCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy2637 122 LATQKEHHRKAFDLISKALKIDEEN-TGNKDVAIEFYKKGISELDKGIAVNCYYGSGEKWERAQRLQEKMKNNLKMAKER 200 (502)
Q Consensus 122 l~~~~~~~~~a~~ii~~a~~~~~~~-~~~~~~Av~~~k~g~d~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (502)
-.+|+..|.+|+.+|..|++.|+.+ +|+.+.|+++|++|+.+|.+.+.+.+. +..+.|+++++++.+++.++..+.++
T Consensus 6 ~~~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~-g~G~~we~Ar~LQ~KM~~nL~~v~~R 84 (89)
T 3eab_A 6 AERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVT-GQGEQCERARRLQAKMMTNLVMAKDR 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCC-CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccC-CCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999888876 499999999999999999999999874 68999999999999999999998888
Q ss_pred hhh
Q psy2637 201 LSI 203 (502)
Q Consensus 201 ~~~ 203 (502)
+..
T Consensus 85 L~~ 87 (89)
T 3eab_A 85 LQL 87 (89)
T ss_dssp HHH
T ss_pred HHh
Confidence 643
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.60 E-value=6.8e-08 Score=96.57 Aligned_cols=96 Identities=19% Similarity=0.253 Sum_probs=58.7
Q ss_pred CCcccccChH----HHHHHHHHHHhCcCCChhhhhcCC-CCCcceEEecCCCCcHHHHHHHHHHHcc----CceEEeecc
Q psy2637 225 VQWQDIAGQE----VAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVATACN----ATFFSISAA 295 (502)
Q Consensus 225 ~~~~~iiG~~----~~~~~l~~~v~~~~~~~~l~~~~~-~~~~~vLL~GppGtGKT~lAraia~~~~----~~fv~i~~s 295 (502)
.+|+++.+.. .+.+.+.+++. ... ....+++|+||||||||++|+++++.+. .+++.+++.
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~----------~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVE----------QYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHH----------HCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHH----------hccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 5788888633 23334444442 111 1257899999999999999999998764 677778877
Q ss_pred chhhhhhhhhH-HHHHHHHHHHHhcCCeEEEEcCCcch
Q psy2637 296 SLTSKYVGQGE-KLVRALFAMARELQPSIIFIDEVDSV 332 (502)
Q Consensus 296 ~l~~~~~g~~~-~~~~~lf~~a~~~~p~iLfLDEId~L 332 (502)
++...+..... ......+... ..+.+|+|||++..
T Consensus 191 ~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 191 SFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred HHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 66554332211 0111122222 23469999999765
No 102
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.58 E-value=3.1e-07 Score=113.59 Aligned_cols=133 Identities=17% Similarity=0.169 Sum_probs=92.2
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccCh
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGE 340 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~ 340 (502)
..++++.||+|||||++++++|+.++.+++.++|++-... ..+..+|..+.... ..+++||++.+.+..
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~G-aw~~~DE~nr~~~ev---- 713 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQIG-AWGCFDEFNRLDEKV---- 713 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHHT-CEEEEETTTSSCHHH----
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhcC-CEeeehhhhhcChHH----
Confidence 3678999999999999999999999999999999875542 22345555554433 699999999884431
Q ss_pred hHHHHHHHHHHHHHh---------ccCCCCCCCcEEEEEEcCCC----CCCcHHHHccccceeeecCCCHHHHHHHHH
Q psy2637 341 HEASRRLKTEFLLEF---------DGLHSNSEHRLLVMGATNRP----QELDEAVLRRFSKRIYVTLPDSKTRKSLLE 405 (502)
Q Consensus 341 ~~~~~~~~~~ll~~l---------~g~~~~~~~~v~vIaaTN~~----~~l~~~l~rRf~~~I~i~~P~~~er~~il~ 405 (502)
.......+..+...+ .|..-....++.|++|.|+. ..+++++++|| +.+.+..|+.+...+++-
T Consensus 714 Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 714 LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 111111111222222 12111223457888899953 57999999999 589999999999888863
No 103
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.55 E-value=5.1e-08 Score=97.23 Aligned_cols=111 Identities=17% Similarity=0.231 Sum_probs=59.9
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCc--eEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhccccc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNAT--FFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE 338 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~--fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~ 338 (502)
+..++|+||||||||++|..++...+.+ |+.+...+..+.+....+..+..+.+.....+ +|+||+++.+......
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGG 200 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccccc
Confidence 3557999999999999999999875444 55542122222222333444444555555443 9999999998654322
Q ss_pred C-hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC
Q psy2637 339 G-EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP 375 (502)
Q Consensus 339 ~-~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~ 375 (502)
. ......+...+++..+.+.... .++.+|+++|..
T Consensus 201 ~s~~G~v~~~lrqlL~~L~~~~k~--~gvtVIlttnp~ 236 (331)
T 2vhj_A 201 NTTSGGISRGAFDLLSDIGAMAAS--RGCVVIASLNPT 236 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHHH--HTCEEEEECCCS
T ss_pred ccccchHHHHHHHHHHHHHHHHhh--CCCEEEEEeCCc
Confidence 1 0001112223344444333222 135677788853
No 104
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.55 E-value=1.2e-06 Score=88.45 Aligned_cols=145 Identities=14% Similarity=0.083 Sum_probs=98.9
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc---C-ce--EEeeccchhhhhhhhhHHHHHHHHHHHH----hcCCeEEEEcCCc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN---A-TF--FSISAASLTSKYVGQGEKLVRALFAMAR----ELQPSIIFIDEVD 330 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~---~-~f--v~i~~s~l~~~~~g~~~~~~~~lf~~a~----~~~p~iLfLDEId 330 (502)
.+.+||+||+|.||++.++.+++.+. . ++ +.++. . ..+..+++.+. .....+++|||++
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~------~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----N------TDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----T------CCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----C------CCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 46789999999999999999998762 1 21 22221 0 11233443332 2345799999998
Q ss_pred c-hhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCC------CCCcHHHHccccceeeecCCCHHHHHHH
Q psy2637 331 S-VLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRP------QELDEAVLRRFSKRIYVTLPDSKTRKSL 403 (502)
Q Consensus 331 ~-L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~------~~l~~~l~rRf~~~I~i~~P~~~er~~i 403 (502)
. +... ..+.|+..++. ++..+++|.+++.. ..+.+.+.+|+. ++.+..|+.++....
T Consensus 87 ~kl~~~-----------~~~aLl~~le~----p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~-~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 87 NGPNAA-----------INEQLLTLTGL----LHDDLLLIVRGNKLSKAQENAAWFTALANRSV-QVTCQTPEQAQLPRW 150 (343)
T ss_dssp SCCCTT-----------HHHHHHHHHTT----CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCE-EEEECCCCTTHHHHH
T ss_pred CCCChH-----------HHHHHHHHHhc----CCCCeEEEEEcCCCChhhHhhHHHHHHHhCce-EEEeeCCCHHHHHHH
Confidence 7 6211 23345555542 23334444444432 356778888985 899999999999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHhcCCCCH
Q psy2637 404 LEKLLNKHGNPLSQLELDAVAKLTEGYSG 432 (502)
Q Consensus 404 l~~~l~~~~~~l~~~~l~~la~~t~g~s~ 432 (502)
+...+...+..+++..++.++..+.|-..
T Consensus 151 l~~~~~~~g~~i~~~a~~~l~~~~~gdl~ 179 (343)
T 1jr3_D 151 VAARAKQLNLELDDAANQVLCYCYEGNLL 179 (343)
T ss_dssp HHHHHHHTTCEECHHHHHHHHHSSTTCHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhchHHH
Confidence 99999999999999999999999887444
No 105
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.55 E-value=2.4e-07 Score=86.41 Aligned_cols=110 Identities=13% Similarity=0.160 Sum_probs=62.1
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccCh
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGE 340 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~ 340 (502)
..++||+||||||||++|.++++.+....+.+..+. ..+. +..+. ...+++|||+|.-
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f~----------l~~l~--~~kIiiLDEad~~-------- 115 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHFW----------LEPLT--DTKVAMLDDATTT-------- 115 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCGG----------GGGGT--TCSSEEEEEECHH--------
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chhh----------hcccC--CCCEEEEECCCch--------
Confidence 357999999999999999999999865544322111 0000 01111 1259999999732
Q ss_pred hHHHHHHHHHHHHHhccCC----CCCC-----CcEEEEEEcCCC---CCCcHHHHccccceeeecCC
Q psy2637 341 HEASRRLKTEFLLEFDGLH----SNSE-----HRLLVMGATNRP---QELDEAVLRRFSKRIYVTLP 395 (502)
Q Consensus 341 ~~~~~~~~~~ll~~l~g~~----~~~~-----~~v~vIaaTN~~---~~l~~~l~rRf~~~I~i~~P 395 (502)
....+...+-..++|.. .... ....+|.|||.+ +..-+.+.+|+. ++.|+.|
T Consensus 116 --~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~-~f~F~~~ 179 (212)
T 1tue_A 116 --CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRIT-VFEFPNA 179 (212)
T ss_dssp --HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCE-EEECCSC
T ss_pred --hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEE-EEEcCCC
Confidence 11112223344555531 1111 122466689874 333367888985 7777754
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.50 E-value=5.7e-07 Score=112.01 Aligned_cols=141 Identities=23% Similarity=0.372 Sum_probs=91.0
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc-cCceEEeeccchhhhhhhhhHHHHHHHHHHH----H----h--------cCCe
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC-NATFFSISAASLTSKYVGQGEKLVRALFAMA----R----E--------LQPS 322 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~-~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a----~----~--------~~p~ 322 (502)
...+|||+||||||||++++.....+ +.+++.++++...+. ..+.+.++.. . + .+..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH------HHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH------HHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 35789999999999998876655444 667788888765432 2223333321 0 0 1125
Q ss_pred EEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCC------CCcEEEEEEcCCCC-----CCcHHHHccccceee
Q psy2637 323 IIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNS------EHRLLVMGATNRPQ-----ELDEAVLRRFSKRIY 391 (502)
Q Consensus 323 iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~------~~~v~vIaaTN~~~-----~l~~~l~rRf~~~I~ 391 (502)
|+||||++....+.-+.+ ....++.+++.. .|..... -.++.+|||+|++. .+++++.|||. ++.
T Consensus 1377 VlFiDDiNmp~~D~yGtQ--~~ielLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~-vi~ 1452 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYGTQ--RVITFIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAP-ILL 1452 (3245)
T ss_dssp EEEETTTTCCCCCTTSCC--HHHHHHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCC-EEE
T ss_pred EEEecccCCCCccccccc--cHHHHHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhce-EEE
Confidence 999999986543322221 122223333322 1222211 14688999999873 69999999996 899
Q ss_pred ecCCCHHHHHHHHHHHHhh
Q psy2637 392 VTLPDSKTRKSLLEKLLNK 410 (502)
Q Consensus 392 i~~P~~~er~~il~~~l~~ 410 (502)
++.|+.++...|+..++..
T Consensus 1453 i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHH
Confidence 9999999999998877654
No 107
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.46 E-value=4e-08 Score=78.38 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHhhhhhhhhhhcccCCCcccHHHHHHHHHh
Q psy2637 398 KTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKR 477 (502)
Q Consensus 398 ~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~s~~dL~~L~~~a~~~airel~~~~~~~v~~~~~~~It~~d~~~al~~ 477 (502)
++|.+||+.++...... .+.+++.++..++||||+||.++|++|+..++++. ...|+.+||..|+..
T Consensus 1 ~~R~~Il~~~l~~~~~~-~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~------------~~~i~~~df~~Al~~ 67 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN------------RYVILQSDLEEAYAT 67 (82)
T ss_dssp -------------CEEC-TTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT------------CSEECHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------cCCcCHHHHHHHHHH
Confidence 46889999888765432 45678999999999999999999999999999974 357999999999999
Q ss_pred h-cCCCCHHHHHHH
Q psy2637 478 I-RRSVSPSSLIQY 490 (502)
Q Consensus 478 ~-~~s~~~~~l~~~ 490 (502)
+ .++.++++++.|
T Consensus 68 v~~~~~~~~~~~~y 81 (82)
T 2dzn_B 68 QVKTDNTVDKFDFY 81 (82)
T ss_dssp TCC-----------
T ss_pred HHcCcCChHHHHhh
Confidence 8 466667777665
No 108
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.24 E-value=6.4e-06 Score=80.04 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=23.5
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
..+++|+||||||||++|++||+.+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 46899999999999999999999753
No 109
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.20 E-value=9.7e-06 Score=74.21 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=22.7
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNAT 288 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~ 288 (502)
.+.|.||+|+||||+++.++..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999987533
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.14 E-value=7.9e-06 Score=101.99 Aligned_cols=135 Identities=13% Similarity=0.178 Sum_probs=88.4
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhcccccChh
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEH 341 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~~~~~~~ 341 (502)
.+..+.||+|||||.+++.+|+.+|.+++.+||++-.+. ..+..+|.-+... ....++||++.+....-....
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~~~vLSvv~ 677 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLEERILSAVS 677 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCCHHHHHHHH
Confidence 456899999999999999999999999999999875442 1233444444332 368899999988432111111
Q ss_pred HHHHHHHHHHHHH-----hc-cCCCCCCCcEEEEEEcCC----CCCCcHHHHccccceeeecCCCHHHHHHHH
Q psy2637 342 EASRRLKTEFLLE-----FD-GLHSNSEHRLLVMGATNR----PQELDEAVLRRFSKRIYVTLPDSKTRKSLL 404 (502)
Q Consensus 342 ~~~~~~~~~ll~~-----l~-g~~~~~~~~v~vIaaTN~----~~~l~~~l~rRf~~~I~i~~P~~~er~~il 404 (502)
+....++..+... +. |..-.....+.|++|.|+ ...+++.+..|| +.|.+..|+.+...+++
T Consensus 678 ~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 678 QQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp HHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHH
Confidence 1111111111111 11 211122345788889985 358999999999 58999999999888876
No 111
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.03 E-value=9.1e-06 Score=97.85 Aligned_cols=113 Identities=24% Similarity=0.339 Sum_probs=72.0
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhh----hhhh------------hhHHHHHHHHHHHHhc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTS----KYVG------------QGEKLVRALFAMAREL 319 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~----~~~g------------~~~~~~~~lf~~a~~~ 319 (502)
.++.+++|+||||||||+||.+++.+. +.....+++.+... ...| ..+..+..+...++..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~ 1504 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1504 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcC
Confidence 456889999999999999999998876 34455555443221 1111 2335556666677788
Q ss_pred CCeEEEEcCCcchhcccc----cCh--hHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCC
Q psy2637 320 QPSIIFIDEVDSVLSERK----EGE--HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR 374 (502)
Q Consensus 320 ~p~iLfLDEId~L~~~~~----~~~--~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~ 374 (502)
.|++|||||++.+.+... .++ .....+++.+++..+.+.....+ +.+| +||.
T Consensus 1505 ~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~--v~VI-~tNq 1562 (2050)
T 3cmu_A 1505 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN--TLLI-FINQ 1562 (2050)
T ss_dssp CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT--CEEE-EEEC
T ss_pred CCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC--cEEE-EEcc
Confidence 999999999998876421 111 11135666777777776655443 4554 4443
No 112
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.02 E-value=8.2e-05 Score=80.38 Aligned_cols=179 Identities=15% Similarity=0.123 Sum_probs=99.8
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc-------cCceEEeec
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC-------NATFFSISA 294 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~-------~~~fv~i~~ 294 (502)
..|.....++|.+...+.|.+.+... ....+.|+|+||+|+|||++|+.+++.. ....+.++.
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~ 187 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSV 187 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEE
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEEC
Confidence 34445678999999999999887321 1234678999999999999999987431 112333333
Q ss_pred cchh-----hhh------hh-----------hhHHHHHHHHHHHHh-cCCeEEEEcCCcchhcccccChhHHHHHHHHHH
Q psy2637 295 ASLT-----SKY------VG-----------QGEKLVRALFAMARE-LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEF 351 (502)
Q Consensus 295 s~l~-----~~~------~g-----------~~~~~~~~lf~~a~~-~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~l 351 (502)
+... ..+ .+ ........+...... .+|.+|+||+++.. ..
T Consensus 188 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----------------~~ 250 (591)
T 1z6t_A 188 GKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----------------WV 250 (591)
T ss_dssp ESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----------------HH
T ss_pred CCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----------------HH
Confidence 2211 100 00 011111222222222 25789999999743 11
Q ss_pred HHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeec---CCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcC
Q psy2637 352 LLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVT---LPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTE 428 (502)
Q Consensus 352 l~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~---~P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~ 428 (502)
+..+ +.+..||.||........ . . ...+.+. ..+.++-.+++...+..... ........+++.+.
T Consensus 251 l~~l-------~~~~~ilvTsR~~~~~~~-~-~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~i~~~~~ 318 (591)
T 1z6t_A 251 LKAF-------DSQCQILLTTRDKSVTDS-V-M--GPKYVVPVESSLGKEKGLEILSLFVNMKKA-DLPEQAHSIIKECK 318 (591)
T ss_dssp HHTT-------CSSCEEEEEESCGGGGTT-C-C--SCEEEEECCSSCCHHHHHHHHHHHHTSCGG-GSCTHHHHHHHHHT
T ss_pred HHHh-------cCCCeEEEECCCcHHHHh-c-C--CCceEeecCCCCCHHHHHHHHHHHhCCCcc-cccHHHHHHHHHhC
Confidence 1111 123567777765421110 0 1 1234443 67899999999887753111 11345688899998
Q ss_pred CCCHHHHHHHHH
Q psy2637 429 GYSGSDLTNLAK 440 (502)
Q Consensus 429 g~s~~dL~~L~~ 440 (502)
|++- .|..+..
T Consensus 319 G~PL-al~~~a~ 329 (591)
T 1z6t_A 319 GSPL-VVSLIGA 329 (591)
T ss_dssp TCHH-HHHHHHH
T ss_pred CCcH-HHHHHHH
Confidence 8644 4554433
No 113
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.70 E-value=0.00047 Score=80.44 Aligned_cols=180 Identities=13% Similarity=0.128 Sum_probs=102.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc---c----CceEEeec
Q psy2637 222 GSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC---N----ATFFSISA 294 (502)
Q Consensus 222 ~~~~~~~~iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~---~----~~fv~i~~ 294 (502)
..|.....++|.+...++|.+.+... ....+.|.|+|+.|+|||+||+.+++.. . ...+-++.
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 44555677999999999999987322 1234568899999999999999988652 1 11223332
Q ss_pred cchhh-----hh------h----------hhhHHHHHHHHHHHHh--cCCeEEEEcCCcchhcccccChhHHHHHHHHHH
Q psy2637 295 ASLTS-----KY------V----------GQGEKLVRALFAMARE--LQPSIIFIDEVDSVLSERKEGEHEASRRLKTEF 351 (502)
Q Consensus 295 s~l~~-----~~------~----------g~~~~~~~~lf~~a~~--~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~l 351 (502)
+.... .. . ......+...+..... .++.+|+||+++... .
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-----------------~ 250 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-----------------V 250 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-----------------H
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-----------------H
Confidence 22100 00 0 0011112222222222 236799999997541 1
Q ss_pred HHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecC-CCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCC
Q psy2637 352 LLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTL-PDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGY 430 (502)
Q Consensus 352 l~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~-P~~~er~~il~~~l~~~~~~l~~~~l~~la~~t~g~ 430 (502)
+ ..+ .....||.||..+.-... . ......+.+.. ++.++-.+++...+...... ......++++.+.|+
T Consensus 251 ~---~~~----~~~~~ilvTtR~~~~~~~-~-~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 251 L---KAF----DNQCQILLTTRDKSVTDS-V-MGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGS 320 (1249)
T ss_dssp H---TTT----CSSCEEEEEESSTTTTTT-C-CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTC
T ss_pred H---Hhh----cCCCEEEEEcCCHHHHHh-h-cCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCC
Confidence 1 111 123577778876432210 0 11224677775 88999999998777443222 234567888999876
Q ss_pred CHHHHHHHH
Q psy2637 431 SGSDLTNLA 439 (502)
Q Consensus 431 s~~dL~~L~ 439 (502)
+ -+|+.+.
T Consensus 321 P-Lal~~~~ 328 (1249)
T 3sfz_A 321 P-LVVSLIG 328 (1249)
T ss_dssp H-HHHHHHH
T ss_pred H-HHHHHHH
Confidence 4 3555443
No 114
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.67 E-value=2.1e-05 Score=80.57 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=59.1
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchhhhhhhhhHHHHHHHHHHHHhcCCeEEEEcCCcchhc-ccc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLS-ERK 337 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~~~~~g~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~-~~~ 337 (502)
.++..++|+||||+||||++++++...+..++.++...-. ....+..+ ....++++||++.+.. .+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg~~------~q~~~~l~dd~~~~~~~~r~ 234 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELGVA------IDQFLVVFEDVKGTGGESRD 234 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHGGG------TTCSCEEETTCCCSTTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHHHh------cchhHHHHHHHHHHHHHHhh
Confidence 3456899999999999999999999887665553322110 00011111 2335789999998864 111
Q ss_pred cChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCCCCcHHHHc
Q psy2637 338 EGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR 384 (502)
Q Consensus 338 ~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~~l~~~l~r 384 (502)
........ ....+...++|. +.|+++||+++.+ +.+++
T Consensus 235 l~~~~~~~-~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~ 272 (377)
T 1svm_A 235 LPSGQGIN-NLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFP 272 (377)
T ss_dssp CCCCSHHH-HHHTTHHHHHCS-------SCEEECCSSSCCE-EECCC
T ss_pred ccccCcch-HHHHHHHHhcCC-------CeEeeccCchhhH-HHhhc
Confidence 10000000 112334445442 4566778887777 44554
No 115
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.60 E-value=0.00052 Score=64.10 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..++|.||+|+|||++++.++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999999654
No 116
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.52 E-value=7.6e-05 Score=67.29 Aligned_cols=37 Identities=22% Similarity=0.412 Sum_probs=31.4
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccch
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l 297 (502)
+..|+|+|+||+||||+++.+++.++.+++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 3568999999999999999999999988887665443
No 117
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.51 E-value=0.00045 Score=74.17 Aligned_cols=173 Identities=14% Similarity=0.090 Sum_probs=93.1
Q ss_pred cChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHH----HccCce---EEeeccch------
Q psy2637 231 AGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT----ACNATF---FSISAASL------ 297 (502)
Q Consensus 231 iG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~----~~~~~f---v~i~~s~l------ 297 (502)
+|.+..+++|.+++... -......|.|+|+.|+|||+||+.+++ .....| +.++.+..
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49999999999887321 012246788999999999999999997 232222 12222221
Q ss_pred --hhhhh---hh-------------hHHHHHHHHH-HHHhcCCeEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccC
Q psy2637 298 --TSKYV---GQ-------------GEKLVRALFA-MARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL 358 (502)
Q Consensus 298 --~~~~~---g~-------------~~~~~~~lf~-~a~~~~p~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~ 358 (502)
..... +. ....+...+. .....++.+|+||+++... . + .+.. .
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--------~----~--~~~~-~--- 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--------T----I--RWAQ-E--- 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--------H----H--HHHH-H---
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--------h----h--cccc-c---
Confidence 00000 00 0011222233 2233237899999997541 0 0 1111 1
Q ss_pred CCCCCCcEEEEEEcCCCCCCcHHHHccccceeeecCCCHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHhcCCCCHHHHHH
Q psy2637 359 HSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGN-PLSQLELDAVAKLTEGYSGSDLTN 437 (502)
Q Consensus 359 ~~~~~~~v~vIaaTN~~~~l~~~l~rRf~~~I~i~~P~~~er~~il~~~l~~~~~-~l~~~~l~~la~~t~g~s~~dL~~ 437 (502)
....||.||....-. .. .......+.++..+.++-.+++...+..... .-.......+++.+.|. |-+|..
T Consensus 264 -----~gs~ilvTTR~~~v~-~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl-PLAl~~ 335 (549)
T 2a5y_B 264 -----LRLRCLVTTRDVEIS-NA-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN-PATLMM 335 (549)
T ss_dssp -----TTCEEEEEESBGGGG-GG-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred -----CCCEEEEEcCCHHHH-HH-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC-hHHHHH
Confidence 124677677653211 11 0112246888889999999988876432211 00112456778888775 434554
Q ss_pred H
Q psy2637 438 L 438 (502)
Q Consensus 438 L 438 (502)
+
T Consensus 336 ~ 336 (549)
T 2a5y_B 336 F 336 (549)
T ss_dssp H
T ss_pred H
Confidence 4
No 118
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.48 E-value=0.004 Score=61.69 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=43.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhh-------hh-------------hhhHHHHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSK-------YV-------------GQGEKLVRALFAMA 316 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~-------~~-------------g~~~~~~~~lf~~a 316 (502)
++..++|+||+|+||||++..+|..+ +..+.-+++...... +. +.........+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 45678899999999999999999876 344444443221110 10 01111112234444
Q ss_pred HhcCCeEEEEcCCcc
Q psy2637 317 RELQPSIIFIDEVDS 331 (502)
Q Consensus 317 ~~~~p~iLfLDEId~ 331 (502)
....+.+++||+...
T Consensus 183 ~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 183 LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCc
Confidence 556788999998854
No 119
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.48 E-value=0.00035 Score=70.80 Aligned_cols=75 Identities=21% Similarity=0.266 Sum_probs=48.1
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhh----------------hhhhhHHHHHHHHHHHHhcC
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSK----------------YVGQGEKLVRALFAMARELQ 320 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~----------------~~g~~~~~~~~lf~~a~~~~ 320 (502)
++..++|+||||+|||+++..++..+ +.+.+.++....... .....+..+..+-.......
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGV 139 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcC
Confidence 45678999999999999999999875 456666665432110 00112222222222333467
Q ss_pred CeEEEEcCCcchhc
Q psy2637 321 PSIIFIDEVDSVLS 334 (502)
Q Consensus 321 p~iLfLDEId~L~~ 334 (502)
+.+++||.+..+.+
T Consensus 140 ~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 140 VDLIVVDSVAALVP 153 (356)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCeEEehHhhhhcC
Confidence 88999999998875
No 120
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.47 E-value=0.00024 Score=74.54 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=35.9
Q ss_pred cCCCCCCccccc-ChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 220 EGGSPVQWQDIA-GQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 220 ~~~~~~~~~~ii-G~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++.|.+|+++- +|..+...+...+.. ....++|.|++|||||+++.+++..+
T Consensus 16 ~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 16 PRGSHMTFDDLTEGQKNAFNIVMKAIKE-------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -----CCSSCCCHHHHHHHHHHHHHHHS-------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCccccCCHHHHHHHHHHHHHHhc-------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456677888775 556666655555521 22489999999999999999999877
No 121
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.42 E-value=0.00033 Score=66.14 Aligned_cols=76 Identities=18% Similarity=0.307 Sum_probs=47.1
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---------cCceEEeeccch--hhh---h---hh-------------------
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---------NATFFSISAASL--TSK---Y---VG------------------- 303 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---------~~~fv~i~~s~l--~~~---~---~g------------------- 303 (502)
++..++|+||||+|||++++.++... +...+.++.... ... . .+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 45678999999999999999999852 345566655431 000 0 00
Q ss_pred hhHHHHHHHHHHHHhcCCeEEEEcCCcchhcc
Q psy2637 304 QGEKLVRALFAMARELQPSIIFIDEVDSVLSE 335 (502)
Q Consensus 304 ~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~ 335 (502)
.....+..+.+.+....|.+|+|||+..+...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 00111222334445567899999999987643
No 122
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.37 E-value=0.00082 Score=68.43 Aligned_cols=75 Identities=23% Similarity=0.329 Sum_probs=47.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh----h------------hhhHHHHHHHHHHHHhcC
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY----V------------GQGEKLVRALFAMARELQ 320 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~----~------------g~~~~~~~~lf~~a~~~~ 320 (502)
++..++|+||||+|||++|..++... +.+++.++...-.... . ...+..+..+-...+...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGA 152 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCC
Confidence 45678999999999999999998765 4566666654321110 0 111222222222233456
Q ss_pred CeEEEEcCCcchhc
Q psy2637 321 PSIIFIDEVDSVLS 334 (502)
Q Consensus 321 p~iLfLDEId~L~~ 334 (502)
+++|+||.+..+.+
T Consensus 153 ~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 153 IDVVVVDSVAALTP 166 (366)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCEEEEeChHHhcc
Confidence 88999999999975
No 123
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.36 E-value=0.00029 Score=71.31 Aligned_cols=75 Identities=24% Similarity=0.326 Sum_probs=46.8
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhh----hhh------------hhHHHHHHHHHHHHhcC
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSK----YVG------------QGEKLVRALFAMARELQ 320 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~----~~g------------~~~~~~~~lf~~a~~~~ 320 (502)
++..++|+||||+|||++|..++... +.+.+.++....... ..| ..+..+..+...+....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 45678999999999999999998765 445555554321110 011 11222222222333557
Q ss_pred CeEEEEcCCcchhc
Q psy2637 321 PSIIFIDEVDSVLS 334 (502)
Q Consensus 321 p~iLfLDEId~L~~ 334 (502)
|.+|+||++..+.+
T Consensus 140 ~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 140 LDIIVIDSVAALVP 153 (349)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcChHhhcc
Confidence 89999999999874
No 124
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.35 E-value=0.0001 Score=66.87 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=29.1
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
+..|+|+|+||+||||+++.+++.++.+|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 467999999999999999999999998887543
No 125
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.32 E-value=0.02 Score=59.70 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=27.1
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc----cCceEEee
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC----NATFFSIS 293 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~i~ 293 (502)
.++.-++|.|+||+|||+++..++... +.+++.++
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345678999999999999999998865 34565554
No 126
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=97.31 E-value=1.1e-06 Score=76.69 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=47.8
Q ss_pred ccccCcchhhHHHHHHH--HHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEH--HRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~--~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||++||+++++++++. .++.++++.||+ ++.+...++++.|+ +|+.||++.+
T Consensus 66 ~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~-------~~~~~~~~~~~~Ga~~yl~KP~~~~ 121 (134)
T 3to5_A 66 NMPGMQGIDLLKNIRADEELKHLPVLMITAE-------AKREQIIEAAQAGVNGYIVKPFTAA 121 (134)
T ss_dssp CCSSSCHHHHHHHHHHSTTTTTCCEEEEESS-------CCHHHHHHHHHTTCCEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHhCCCCCCCeEEEEECC-------CCHHHHHHHHHCCCCEEEECCCCHH
Confidence 49999999999999964 467889999999 88999999999999 9999999874
No 127
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.30 E-value=0.00058 Score=63.39 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=29.0
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFSISAAS 296 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~ 296 (502)
++..++|+||||+|||++++.++...+.+.+.++...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4567899999999999999999985455666666543
No 128
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.28 E-value=0.00062 Score=64.37 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=25.9
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc---cCceEEeec
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC---NATFFSISA 294 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~ 294 (502)
..+++.|++|+|||+++-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 568999999999999999998876 555544443
No 129
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.26 E-value=0.00075 Score=67.46 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=48.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---------cCceEEeeccch--hhh---h---hh----------------hhH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---------NATFFSISAASL--TSK---Y---VG----------------QGE 306 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---------~~~fv~i~~s~l--~~~---~---~g----------------~~~ 306 (502)
++..++|+||||+|||++|..++... +.+.+.++.... ... + .+ ..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 45678999999999999999999875 345666665432 110 0 00 011
Q ss_pred ---HHHHHHHHHHHh-cCCeEEEEcCCcchhc
Q psy2637 307 ---KLVRALFAMARE-LQPSIIFIDEVDSVLS 334 (502)
Q Consensus 307 ---~~~~~lf~~a~~-~~p~iLfLDEId~L~~ 334 (502)
..+..+...... ..+.+|+||.+..+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 122233344444 6789999999999864
No 130
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.25 E-value=0.00057 Score=69.34 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=47.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh----hh-----------hhHHHHHHHHH-HHHhcC
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY----VG-----------QGEKLVRALFA-MARELQ 320 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~----~g-----------~~~~~~~~lf~-~a~~~~ 320 (502)
++..++|+||||+|||++|..++... +.+.+.++........ .| .....+..+++ ..+...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~ 141 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 141 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccC
Confidence 45678999999999999999998765 4566666653211100 00 01111222232 233467
Q ss_pred CeEEEEcCCcchhc
Q psy2637 321 PSIIFIDEVDSVLS 334 (502)
Q Consensus 321 p~iLfLDEId~L~~ 334 (502)
+.+|+||.+..+.+
T Consensus 142 ~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 142 VDVIVVDSVAALTP 155 (356)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcCHHHhcc
Confidence 88999999999874
No 131
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.24 E-value=0.00017 Score=66.65 Aligned_cols=33 Identities=33% Similarity=0.475 Sum_probs=29.1
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
++..++|.||||+||||+++.+++.++.+++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 346799999999999999999999999887654
No 132
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.22 E-value=0.0066 Score=63.11 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=47.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhh----------------h---h-hhhHHHHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSK----------------Y---V-GQGEKLVRALFAMA 316 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~----------------~---~-g~~~~~~~~lf~~a 316 (502)
++..++++|++|+||||++..+|..+ +..+.-+++...... + . ..........++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999876 445544544322110 0 0 11122334556666
Q ss_pred HhcCCeEEEEcCCcch
Q psy2637 317 RELQPSIIFIDEVDSV 332 (502)
Q Consensus 317 ~~~~p~iLfLDEId~L 332 (502)
....+.++++|....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 6666789999988655
No 133
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.22 E-value=0.032 Score=58.00 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=27.4
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc----cCceEEeec
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC----NATFFSISA 294 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~i~~ 294 (502)
.++.-++|.|+||+|||++|..++... +.+++.++.
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 345568999999999999999998764 445655544
No 134
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.22 E-value=0.00081 Score=67.84 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=47.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---------cCceEEeeccch--hhh---h---hh----------------hhH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---------NATFFSISAASL--TSK---Y---VG----------------QGE 306 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---------~~~fv~i~~s~l--~~~---~---~g----------------~~~ 306 (502)
++..++|+||||+|||++|..++... +...+.++.... ... + .+ ..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHH
Confidence 45668999999999999999999873 345566655432 100 0 00 011
Q ss_pred ---HHHHHHHHHHHh--cCCeEEEEcCCcchhcc
Q psy2637 307 ---KLVRALFAMARE--LQPSIIFIDEVDSVLSE 335 (502)
Q Consensus 307 ---~~~~~lf~~a~~--~~p~iLfLDEId~L~~~ 335 (502)
..+..+...+.. ..+.+|+||.+..+...
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 112223344444 56789999999998743
No 135
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.17 E-value=0.00016 Score=66.29 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=19.5
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.-++++||+|+|||+++..++...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999996666544
No 136
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.17 E-value=0.00025 Score=63.24 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=27.5
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
.|+|.|+||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5789999999999999999999998876554
No 137
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.16 E-value=0.0013 Score=62.18 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=43.0
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccc-------hhhhhhhhh-----HHHHHHHHHHHHh----c
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAAS-------LTSKYVGQG-----EKLVRALFAMARE----L 319 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~-------l~~~~~g~~-----~~~~~~lf~~a~~----~ 319 (502)
.++.-++++||+|+|||+++..++..+ +...+.+.... +.+. .|.. ......+++.+.. .
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~ 88 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFND 88 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCT
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCC
Confidence 345668889999999999998888776 33444442211 1111 0100 0011345555544 3
Q ss_pred CCeEEEEcCCcch
Q psy2637 320 QPSIIFIDEVDSV 332 (502)
Q Consensus 320 ~p~iLfLDEId~L 332 (502)
.+.+|+|||+..+
T Consensus 89 ~~dvViIDEaQ~l 101 (223)
T 2b8t_A 89 ETKVIGIDEVQFF 101 (223)
T ss_dssp TCCEEEECSGGGS
T ss_pred CCCEEEEecCccC
Confidence 4789999999865
No 138
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.14 E-value=0.00024 Score=64.22 Aligned_cols=32 Identities=31% Similarity=0.609 Sum_probs=27.9
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
+..|+|+|+||+|||++++.+++.++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 46799999999999999999999998776643
No 139
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.13 E-value=0.0037 Score=66.87 Aligned_cols=73 Identities=14% Similarity=0.240 Sum_probs=49.2
Q ss_pred eEEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC--CCcHHHHccccceeeecCCCHHH
Q psy2637 322 SIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ--ELDEAVLRRFSKRIYVTLPDSKT 399 (502)
Q Consensus 322 ~iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~--~l~~~l~rRf~~~I~i~~P~~~e 399 (502)
-+|+|||++.+..... ......+..+.. .| ....|.+|.+|.+|. .++..++.-|...|.+...+..+
T Consensus 345 ivvVIDE~~~L~~~~~----~~~~~~L~~Iar--~G----Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG----KKVEELIARIAQ--KA----RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHTC----HHHHHHHHHHHH--HC----TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhhh----HHHHHHHHHHHH--HH----hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHH
Confidence 5899999998864321 111111222211 11 234588898999886 88888888888888999998888
Q ss_pred HHHHH
Q psy2637 400 RKSLL 404 (502)
Q Consensus 400 r~~il 404 (502)
...++
T Consensus 415 sr~IL 419 (574)
T 2iut_A 415 SRTIL 419 (574)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87776
No 140
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.12 E-value=0.00026 Score=64.15 Aligned_cols=31 Identities=29% Similarity=0.524 Sum_probs=27.5
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
..|+|+|+||+|||++|+.+++.++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 4589999999999999999999999887654
No 141
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.11 E-value=0.00025 Score=63.93 Aligned_cols=29 Identities=34% Similarity=0.611 Sum_probs=26.5
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
.++|.|+||+||||+|+.+++.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987764
No 142
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.11 E-value=0.0023 Score=60.54 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.9
Q ss_pred CCcceEEecCCCCcHHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVA 282 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia 282 (502)
++..+.|.||+|+||||+++.++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 45678999999999999999998
No 143
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.09 E-value=0.0014 Score=61.08 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+||||+++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999854
No 144
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.09 E-value=0.00028 Score=63.00 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=28.2
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
...++|.|++|+||||+++.+++.++.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 36799999999999999999999999888754
No 145
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.08 E-value=0.0039 Score=58.72 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=25.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEee
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSIS 293 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~ 293 (502)
++..++|+||||+|||+++..++... +.+.+.++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45678999999999999998887653 34444444
No 146
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.06 E-value=0.00031 Score=64.05 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=27.3
Q ss_pred CcceEEecCCCCcHHHHHHHHHHH-ccCceEEe
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATA-CNATFFSI 292 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~-~~~~fv~i 292 (502)
+..|+|+|+||+||||+++.+++. ++.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 457999999999999999999999 67666543
No 147
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.04 E-value=0.00032 Score=63.81 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=27.3
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
+..|+|.|+||+||||+++.+++.++.+++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4568999999999999999999999877655
No 148
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.03 E-value=0.0012 Score=79.84 Aligned_cols=112 Identities=18% Similarity=0.222 Sum_probs=67.6
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhhh----hh--------hhHHHHHHHHHHHHh----c
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSKY----VG--------QGEKLVRALFAMARE----L 319 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~~----~g--------~~~~~~~~lf~~a~~----~ 319 (502)
.++..++|.|+||+|||++|..+|..+ +.+++.++........ .| .....+..+++.++. .
T Consensus 730 ~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~ 809 (2050)
T 3cmu_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 809 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhcc
Confidence 356779999999999999999999877 3467777765443322 11 011112334444333 6
Q ss_pred CCeEEEEcCCcchhc-cc----ccC-hhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEc
Q psy2637 320 QPSIIFIDEVDSVLS-ER----KEG-EHEASRRLKTEFLLEFDGLHSNSEHRLLVMGAT 372 (502)
Q Consensus 320 ~p~iLfLDEId~L~~-~~----~~~-~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaT 372 (502)
.|++|+||.++.+.. .. ..+ .+....|....++..|..+....+ +.||++.
T Consensus 810 ~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~--v~VI~l~ 866 (2050)
T 3cmu_A 810 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN--TLLIFIN 866 (2050)
T ss_dssp CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT--CEEEEEE
T ss_pred CCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhC--CEEEEec
Confidence 789999999999975 21 111 112334445666666665554444 4455444
No 149
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.02 E-value=0.00041 Score=62.06 Aligned_cols=30 Identities=37% Similarity=0.763 Sum_probs=26.3
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
..+.|+||+|+||||+++.++..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 568999999999999999999998866553
No 150
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.02 E-value=0.00072 Score=73.02 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=22.3
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
...++|+||||||||+++.+++..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999998865
No 151
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.00 E-value=0.0024 Score=61.28 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=31.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccch
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l 297 (502)
.+..++|.|+||+||||+|+.++..++.+++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 35678999999999999999999998766666666554
No 152
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.99 E-value=0.00046 Score=63.61 Aligned_cols=32 Identities=34% Similarity=0.474 Sum_probs=27.8
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
+..|+|.|+||+||||+|+.+++.++.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 45689999999999999999999998776654
No 153
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.98 E-value=0.00043 Score=66.74 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=28.6
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEeec
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSISA 294 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~~ 294 (502)
.++|.||||+|||++|+.+|+.++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988877654
No 154
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.95 E-value=0.0019 Score=66.52 Aligned_cols=77 Identities=23% Similarity=0.316 Sum_probs=45.8
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---------cCceEEeeccchhh--------hhhh------------------
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---------NATFFSISAASLTS--------KYVG------------------ 303 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---------~~~fv~i~~s~l~~--------~~~g------------------ 303 (502)
.++..++|+||||+|||+|++.++-.. +...+.++...... ...+
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 345678999999999999999776433 23355555433110 0000
Q ss_pred -hhHHHHHHHHHHHHhcCCeEEEEcCCcchhcc
Q psy2637 304 -QGEKLVRALFAMARELQPSIIFIDEVDSVLSE 335 (502)
Q Consensus 304 -~~~~~~~~lf~~a~~~~p~iLfLDEId~L~~~ 335 (502)
.....+..+...+....|.+|+||++..+...
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 00111222334444567899999999887653
No 155
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.95 E-value=0.0013 Score=64.59 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=30.0
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccch
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l 297 (502)
+..++|.||||+||||+|+.+++.++..++.+++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 4668899999999999999999988555667766444
No 156
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.93 E-value=0.00045 Score=62.97 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=27.8
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
+..|+|.|+||+||||+++.+++.++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 46789999999999999999999998776544
No 157
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.93 E-value=0.00043 Score=61.47 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=25.1
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
.|+|.||||+||||+|+.+ +.++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5789999999999999999 8888776653
No 158
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.92 E-value=0.00049 Score=61.49 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=26.7
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
..|+|+|+||+|||++|+.+++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 458999999999999999999999877664
No 159
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.91 E-value=0.00044 Score=62.81 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=26.7
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
+..|+|.|+||+||||+|+.+++.++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 3568999999999999999999998876644
No 160
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.91 E-value=0.00048 Score=62.65 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=29.6
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeeccc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAAS 296 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~ 296 (502)
+..+.|.||+|+||||+++.++...+.+.+.++..+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 467899999999999999999988766666666544
No 161
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.90 E-value=0.00071 Score=62.34 Aligned_cols=31 Identities=29% Similarity=0.659 Sum_probs=27.2
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
+..|+|.|++|+||||+|+.+++.++.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999998876654
No 162
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.88 E-value=0.0019 Score=62.28 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=30.2
Q ss_pred CcceEEecCCCCcHHHHHHHHHHH---ccCceEEeeccchh
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATA---CNATFFSISAASLT 298 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~---~~~~fv~i~~s~l~ 298 (502)
+..|+|.|+||+||||+|+.+++. .+.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 356899999999999999999998 57777755554443
No 163
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.88 E-value=0.00054 Score=64.15 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=27.8
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
+..|+|.|+||+||||+++.+++.++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 46789999999999999999999998766554
No 164
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.87 E-value=0.0024 Score=63.41 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=44.5
Q ss_pred ceEEecCCCCcHHHHHHHHHHHc-----cCceEEeeccchhh-hh---hh------------hhHHHHHHHHHH---HHh
Q psy2637 263 GLLLFGPPGNGKTMLARAVATAC-----NATFFSISAASLTS-KY---VG------------QGEKLVRALFAM---ARE 318 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~-----~~~fv~i~~s~l~~-~~---~g------------~~~~~~~~lf~~---a~~ 318 (502)
.++|+||||+|||+|+..++... +...+.++..+-.. .+ .| ..+...-.+.+. ...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 58999999999999988877654 44566666543211 00 01 111110112222 244
Q ss_pred cCCeEEEEcCCcchhc
Q psy2637 319 LQPSIIFIDEVDSVLS 334 (502)
Q Consensus 319 ~~p~iLfLDEId~L~~ 334 (502)
..|.+|+||-|..+.+
T Consensus 110 ~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 110 GEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TCCEEEEEECSTTCBC
T ss_pred cCceEEEEeccccccc
Confidence 5789999999999975
No 165
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.87 E-value=0.00048 Score=62.42 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=23.2
Q ss_pred cceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
..|+|.|+||+||||+++.+++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999886
No 166
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.85 E-value=0.0031 Score=63.74 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=23.3
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|+||+|+|||++++.++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999999876
No 167
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.84 E-value=0.017 Score=59.94 Aligned_cols=73 Identities=18% Similarity=0.173 Sum_probs=44.7
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhh----------hhhh----------hhHHHHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTS----------KYVG----------QGEKLVRALFAMA 316 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~----------~~~g----------~~~~~~~~lf~~a 316 (502)
++..+++.||+|+||||++..+|..+ +..+..+++..... ...+ .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45678899999999999999999876 44444444332110 0000 0111122334445
Q ss_pred HhcCCeEEEEcCCcch
Q psy2637 317 RELQPSIIFIDEVDSV 332 (502)
Q Consensus 317 ~~~~p~iLfLDEId~L 332 (502)
....+.+|++|....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5557789999988654
No 168
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.83 E-value=0.00063 Score=63.36 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=26.2
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
.|+|+||||+||||+|+.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999998776654
No 169
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.83 E-value=0.012 Score=62.45 Aligned_cols=73 Identities=15% Similarity=0.341 Sum_probs=46.6
Q ss_pred EEEEcCCcchhcccccChhHHHHHHHHHHHHHhccCCCCCCCcEEEEEEcCCCC--CCcHHHHccccceeeecCCCHHHH
Q psy2637 323 IIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ--ELDEAVLRRFSKRIYVTLPDSKTR 400 (502)
Q Consensus 323 iLfLDEId~L~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~~v~vIaaTN~~~--~l~~~l~rRf~~~I~i~~P~~~er 400 (502)
+|+|||...+.... ...+ ..++..+.... ....+.+|.+|.++. .++..++..+...|.+...+..+.
T Consensus 300 vlvIDE~~~ll~~~-------~~~~-~~~l~~Lar~g--Ra~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~ds 369 (512)
T 2ius_A 300 VVLVDEFADLMMTV-------GKKV-EELIARLAQKA--RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDS 369 (512)
T ss_dssp EEEEETHHHHHHHH-------HHHH-HHHHHHHHHHC--GGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHH
T ss_pred EEEEeCHHHHHhhh-------hHHH-HHHHHHHHHHh--hhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHH
Confidence 89999998775321 1111 12222221111 112477778888875 688888888887889999998888
Q ss_pred HHHHH
Q psy2637 401 KSLLE 405 (502)
Q Consensus 401 ~~il~ 405 (502)
..++.
T Consensus 370 r~ilg 374 (512)
T 2ius_A 370 RTILD 374 (512)
T ss_dssp HHHHS
T ss_pred HHhcC
Confidence 87764
No 170
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.83 E-value=0.00044 Score=62.61 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=26.0
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
..++|.|+||+||||+++.+++.++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 468999999999999999999998866543
No 171
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.83 E-value=0.00053 Score=61.84 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=23.2
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFF 290 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv 290 (502)
+..|+|.|+||+||||+|+.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 356899999999999999999999998876
No 172
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.82 E-value=0.0028 Score=75.72 Aligned_cols=76 Identities=22% Similarity=0.294 Sum_probs=49.4
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhh----hhhhh--------hHHHHHHHHHHH----Hhc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTS----KYVGQ--------GEKLVRALFAMA----REL 319 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~----~~~g~--------~~~~~~~lf~~a----~~~ 319 (502)
.++..++|+||||+|||++|..++... +.++..++...... ...|. ....+..+++.+ ...
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~ 809 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 809 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHcc
Confidence 456789999999999999999998876 34666666543321 11110 000122333333 356
Q ss_pred CCeEEEEcCCcchhc
Q psy2637 320 QPSIIFIDEVDSVLS 334 (502)
Q Consensus 320 ~p~iLfLDEId~L~~ 334 (502)
.|++|+||.+..+.+
T Consensus 810 ~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 810 AVDVIVVDSVAALTP 824 (1706)
T ss_dssp CCSEEEESCSTTCCC
T ss_pred CCCEEEEechhhhcc
Confidence 889999999999874
No 173
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.81 E-value=0.0025 Score=63.40 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=22.1
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~ 284 (502)
++..++|+||||+|||++|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999975
No 174
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.81 E-value=0.00065 Score=60.38 Aligned_cols=30 Identities=20% Similarity=0.432 Sum_probs=26.5
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
.|+|+|++|+||||+|+.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 478999999999999999999998777643
No 175
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.80 E-value=0.00061 Score=62.25 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=27.0
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
+..|+|.|+||+||||+|+.+++.++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35689999999999999999999998665543
No 176
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.78 E-value=0.00068 Score=63.07 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=26.1
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
.|+|+||||+||||+|+.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999998776644
No 177
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.78 E-value=0.0007 Score=63.75 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=27.7
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
+..|+|.|+||+||||+++.+++.++.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 46789999999999999999999998766543
No 178
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.74 E-value=0.00063 Score=63.77 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=27.0
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
+..|+|.|+||+||||+++.+++.++.+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4679999999999999999999999866554
No 179
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.74 E-value=0.0013 Score=62.87 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=27.9
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
++..|+|.||||+||||+|+.+++.++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 456799999999999999999999987665543
No 180
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.74 E-value=0.00069 Score=61.39 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=26.7
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
..|+|.|+||+||||+++.+++.++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5689999999999999999999988665543
No 181
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.74 E-value=0.0013 Score=66.60 Aligned_cols=70 Identities=21% Similarity=0.295 Sum_probs=43.1
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc----CceEEeec-cchh---------hhhhhhhHHHHHHHHHHHHhcCCeEEEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN----ATFFSISA-ASLT---------SKYVGQGEKLVRALFAMARELQPSIIFI 326 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~----~~fv~i~~-s~l~---------~~~~g~~~~~~~~lf~~a~~~~p~iLfL 326 (502)
...++|.||+|+||||++++++...+ ..++.+.- .++. ....+.........+..+....|.+|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 35789999999999999999988662 22222110 0000 0001111112344667777789999999
Q ss_pred cCCc
Q psy2637 327 DEVD 330 (502)
Q Consensus 327 DEId 330 (502)
||+-
T Consensus 203 DEp~ 206 (356)
T 3jvv_A 203 GEMR 206 (356)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9994
No 182
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.74 E-value=0.00067 Score=60.80 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=23.1
Q ss_pred cceEEecCCCCcHHHHHHHHHH-HccCce
Q psy2637 262 RGLLLFGPPGNGKTMLARAVAT-ACNATF 289 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~-~~~~~f 289 (502)
..|+|.|+||+||||+|+.+++ ..+..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 4588999999999999999998 455433
No 183
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.74 E-value=0.00085 Score=61.75 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=27.2
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
+..|+|.|++|+||||+++.+++.++.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 35688999999999999999999998766544
No 184
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.73 E-value=0.00095 Score=64.69 Aligned_cols=71 Identities=21% Similarity=0.317 Sum_probs=41.9
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccC---ceEEeeccch---h--------hhhhhhhHHHHHHHHHHHHhcCCeEEE
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNA---TFFSISAASL---T--------SKYVGQGEKLVRALFAMARELQPSIIF 325 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~---~fv~i~~s~l---~--------~~~~g~~~~~~~~lf~~a~~~~p~iLf 325 (502)
++..++|.||+|+||||++++++..... --+.++...+ . ....+.....+...+..+-...|.+|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 4567899999999999999999986521 1111111110 0 000010111234455555566899999
Q ss_pred EcCCc
Q psy2637 326 IDEVD 330 (502)
Q Consensus 326 LDEId 330 (502)
+||.-
T Consensus 104 lDEp~ 108 (261)
T 2eyu_A 104 VGEMR 108 (261)
T ss_dssp ESCCC
T ss_pred eCCCC
Confidence 99984
No 185
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.73 E-value=0.00089 Score=60.06 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=26.1
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
+..++|.||+|+||||+++.++..++..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4568999999999999999999988755443
No 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.73 E-value=0.013 Score=66.91 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=35.4
Q ss_pred ccChHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHH
Q psy2637 230 IAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 230 iiG~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~ 284 (502)
.+|.+...+.|.+.+... ...+.+.|+|+.|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 389999999998887321 12467889999999999999999864
No 187
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.72 E-value=0.00089 Score=63.38 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=27.9
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
+..|+|.|+||+||||+|+.|++.++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 46799999999999999999999998766554
No 188
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=96.64 E-value=0.0011 Score=64.01 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=43.7
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAV 170 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~ 170 (502)
.||+++|+++++++++. ..++++.||. ++.+.++++++.|+ +|+.||...
T Consensus 57 ~mP~~~G~~~~~~lr~~--~~pvi~lt~~-------~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 57 TLPDAPSGEAVKVLLER--GLPVVILTAD-------ISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp CBTTBTTSHHHHHHHHT--TCCEEEEECC--------CHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCCCCCHHHHHHHHHhC--CCCEEEEEcc-------CCHHHHHHHHHCCCcEEEeCCchh
Confidence 49999999999999974 4789999998 88999999999999 999999643
No 189
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.64 E-value=0.00088 Score=62.66 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=27.3
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
..|+|.|+||+||||+|+.+++.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 5689999999999999999999998776654
No 190
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.63 E-value=0.0013 Score=60.62 Aligned_cols=31 Identities=35% Similarity=0.637 Sum_probs=26.0
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCceE
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATFF 290 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv 290 (502)
++..+.|.||+|+||||+++.++..++..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 3567899999999999999999998865443
No 191
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.61 E-value=0.0015 Score=58.99 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=30.5
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAAS 296 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~ 296 (502)
+..+.|+|++|+||||+++.++..+ +.+++.++...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 4668899999999999999999987 77888776543
No 192
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.57 E-value=0.0015 Score=62.33 Aligned_cols=32 Identities=22% Similarity=0.491 Sum_probs=26.5
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccCceE
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNATFF 290 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv 290 (502)
..+..+.|.||+|+||||+++.|++.++...+
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 34567999999999999999999998875543
No 193
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.57 E-value=0.12 Score=53.69 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=27.0
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEee
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSIS 293 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~ 293 (502)
.++.-++|.|+||+|||++|..+|... +.++..++
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 345668999999999999999998765 44555544
No 194
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.57 E-value=0.0013 Score=65.66 Aligned_cols=33 Identities=36% Similarity=0.560 Sum_probs=29.5
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEeec
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISA 294 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~ 294 (502)
..++|.||+|+|||++++.+|+.++.+++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 468999999999999999999999988887754
No 195
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.56 E-value=0.0043 Score=58.95 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=27.1
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEeec
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISA 294 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~ 294 (502)
..++++||+|+|||.++.+++...+.+.+.+..
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 358999999999999999999888666665544
No 196
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.55 E-value=0.0013 Score=61.82 Aligned_cols=37 Identities=19% Similarity=0.409 Sum_probs=29.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
.++.|+|.||||+||+|.|+.|++.++.+ .++.+++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdll 64 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLL 64 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHH
Confidence 34668889999999999999999998754 45555554
No 197
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.54 E-value=0.0012 Score=61.47 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=26.3
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
.|+|.|+||+||||+|+.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999998776554
No 198
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.53 E-value=0.017 Score=56.81 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=27.2
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc----cCceEEeec
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC----NATFFSISA 294 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~i~~ 294 (502)
.++..++|.||+|+||||++..+|..+ |..+..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 345678999999999999999999765 334444443
No 199
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.49 E-value=0.0019 Score=58.53 Aligned_cols=31 Identities=19% Similarity=0.077 Sum_probs=26.6
Q ss_pred ceEEecCCCCcHHHHHHHHHHHc---cCceEEee
Q psy2637 263 GLLLFGPPGNGKTMLARAVATAC---NATFFSIS 293 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~---~~~fv~i~ 293 (502)
.|.|+|++|+||||+++.+++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 77776554
No 200
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.49 E-value=0.0016 Score=60.83 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=27.6
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEeeccchh
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~l~ 298 (502)
.++|.||||+||+|.|+.|++.++.+. ++.+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 378899999999999999999987654 5555554
No 201
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.49 E-value=0.012 Score=54.22 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.1
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
...|++++++|.|||++|-.++-+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA 52 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARA 52 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998876
No 202
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.48 E-value=0.0018 Score=65.29 Aligned_cols=30 Identities=27% Similarity=0.599 Sum_probs=27.2
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
.+++|.|++|+|||+++++++..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999888855
No 203
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.48 E-value=0.0069 Score=58.80 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=22.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..++|+||+|+|||++++.++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998744
No 204
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.45 E-value=0.0016 Score=59.54 Aligned_cols=29 Identities=21% Similarity=0.508 Sum_probs=25.6
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
.|.|.|++|+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999876653
No 205
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.45 E-value=0.0021 Score=58.93 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=27.9
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc-cCceEEee
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC-NATFFSIS 293 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~-~~~fv~i~ 293 (502)
+..|.|.|++|+||||+++.+++.+ +.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 56666554
No 206
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.44 E-value=0.0013 Score=59.62 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=22.3
Q ss_pred ceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~ 286 (502)
.|+|.|+||+||||+++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999885
No 207
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.42 E-value=0.0019 Score=60.29 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=25.6
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceE
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFF 290 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv 290 (502)
..+.|.||+|+||||+++.++..++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 46889999999999999999998886654
No 208
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.41 E-value=0.0029 Score=56.82 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=17.8
Q ss_pred CcceEEecCCCCcHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARA 280 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAra 280 (502)
+..+.|.||+|+||||+++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 45688999999999999994
No 209
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.39 E-value=0.0024 Score=58.75 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+||||+++.++..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999987
No 210
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.38 E-value=0.0013 Score=60.66 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=26.0
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
+..|.|+|++|+||||+++.+++.++.+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~ 40 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVE 40 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCc
Confidence 4568999999999999999999988655443
No 211
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.37 E-value=0.0016 Score=65.28 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=29.8
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEeecc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISAA 295 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s 295 (502)
..|+|.||+|+|||+|+..||+.++.+++..+.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4688999999999999999999999888776554
No 212
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=96.37 E-value=0.00016 Score=74.06 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=44.9
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhH
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIA 169 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~ 169 (502)
.||+++|+++++++++..+.+++|+.|++ .+.+.+.++++.|+ +|+.||++
T Consensus 58 ~mp~~~G~~~~~~lr~~~~~~pii~lt~~-------~~~~~~~~a~~~ga~~yl~KP~~ 109 (394)
T 3eq2_A 58 RMPQIDGLELIRRIRQTASETPIIVLSGA-------GVMSDAVEALRLGAADYLIKPLE 109 (394)
T ss_dssp CSSSSCTHHHHHHHHHTTCCCCEEEC----------CHHHHHHHHHHHTCSEECCSSCS
T ss_pred CCCCCCHHHHHHHHHhhCCCCcEEEEEcC-------CCHHHHHHHHhcChhhEEECCCC
Confidence 49999999999999999999999999999 78889999999999 99999983
No 213
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.36 E-value=0.0017 Score=59.77 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=24.9
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
.|.|+|++|+||||+++.++. ++.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 478999999999999999999 77666544
No 214
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.35 E-value=0.0081 Score=56.54 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=26.1
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc----cCceEEeec
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC----NATFFSISA 294 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~i~~ 294 (502)
.++.-++|+|+||+|||++|..++... +.+.+.++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 345678999999999999998876542 455555443
No 215
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.34 E-value=0.0021 Score=60.38 Aligned_cols=29 Identities=28% Similarity=0.545 Sum_probs=25.1
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
.|+|.|+||+||||+++.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 37899999999999999999998865544
No 216
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.34 E-value=0.0016 Score=60.19 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=25.4
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFF 290 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv 290 (502)
+..|+|+|++|+||||+++.+++.++.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~ 38 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGH 38 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999998754443
No 217
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.32 E-value=0.0027 Score=57.77 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=24.9
Q ss_pred eEEecCCCCcHHHHHHHHHHHc---cCceEEe
Q psy2637 264 LLLFGPPGNGKTMLARAVATAC---NATFFSI 292 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~---~~~fv~i 292 (502)
|.|.|++|+||||+++.+++.+ +.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 7899999999999999999998 7777644
No 218
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.29 E-value=0.0025 Score=61.35 Aligned_cols=32 Identities=34% Similarity=0.574 Sum_probs=28.4
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
+..+.|.|++|+||||+++.++..++.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 46799999999999999999999999877654
No 219
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.26 E-value=0.0026 Score=58.43 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=26.7
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
.+.|.|++|+|||++++.+++.++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999998777653
No 220
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.25 E-value=0.002 Score=65.73 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=42.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc----CceEEeecc-ch--hh--hhh-----hhhHHHHHHHHHHHHhcCCeEEE
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN----ATFFSISAA-SL--TS--KYV-----GQGEKLVRALFAMARELQPSIIF 325 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~----~~fv~i~~s-~l--~~--~~~-----g~~~~~~~~lf~~a~~~~p~iLf 325 (502)
++..++|.||+|+||||++++++.... ..++.+... ++ .. .++ |.....+...+..+....|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 456789999999999999999998652 222222110 00 00 001 10111224455556667899999
Q ss_pred EcCCc
Q psy2637 326 IDEVD 330 (502)
Q Consensus 326 LDEId 330 (502)
+||+-
T Consensus 215 ldE~~ 219 (372)
T 2ewv_A 215 VGEMR 219 (372)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99994
No 221
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.24 E-value=0.0023 Score=59.00 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=26.3
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
..|.|+|++|+||||+++.+++.++.+++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 4578999999999999999999888776543
No 222
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.23 E-value=0.0024 Score=58.34 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=25.7
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
+..|.|.|++|+||||+++.+++. +.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 456899999999999999999998 766554
No 223
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.23 E-value=0.0029 Score=62.58 Aligned_cols=35 Identities=29% Similarity=0.531 Sum_probs=29.5
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEEeecc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAA 295 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s 295 (502)
+..++|.||+|+|||+||..+|+.++.+++..+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 35678999999999999999999998777766543
No 224
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.19 E-value=0.0025 Score=58.54 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=24.4
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNAT 288 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~ 288 (502)
+..|+|.|+||+||||+++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3568899999999999999999988653
No 225
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.18 E-value=0.0023 Score=58.98 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=24.1
Q ss_pred ceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
.+.|.||+|+||||+++.++. ++.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999999999988 7776653
No 226
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.17 E-value=0.0032 Score=58.15 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=24.1
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
++..++|.||||+||||+++.++..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456789999999999999999999874
No 227
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.14 E-value=0.0034 Score=59.73 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=26.6
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
+..+.|.||+|+||||+++.+++.++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3568999999999999999999999866543
No 228
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.14 E-value=0.025 Score=51.75 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=20.6
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~ 285 (502)
..+++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999988877643
No 229
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=96.14 E-value=0.021 Score=45.09 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhhchhccCCchHHHHHHHHHHHHHHHHhHhhh
Q psy2637 128 HHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNC 172 (502)
Q Consensus 128 ~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~d~l~k~~~~~~ 172 (502)
...+|+.++..|. ..|.+|++++|+.+|+.|+++|.+.++.+.
T Consensus 15 ~~~~Ai~lv~~Av--e~D~~g~y~eAl~lY~~aie~l~~alk~e~ 57 (83)
T 2w2u_A 15 LEEMARKYAINAV--KADKEGNAEEAITNYKKAIEVLAQLVSLYR 57 (83)
T ss_dssp HHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHH--HHHHhccHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5678999999998 677889999999999999999999988753
No 230
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.13 E-value=0.0037 Score=59.80 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=25.5
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCce
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATF 289 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~f 289 (502)
+..|.|.|++|+||||+|+.+++.++.++
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 35688999999999999999999988763
No 231
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.12 E-value=0.004 Score=59.75 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=26.7
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCceE
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATFF 290 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv 290 (502)
++..+.|.||+|+||||+++.+++.++.+++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 3457889999999999999999999986554
No 232
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.07 E-value=0.0039 Score=62.44 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=44.7
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc--CceEEeeccc-h-----hhh--hhhhhHHHHHHHHHHHHhcCCeEEEEcCCc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN--ATFFSISAAS-L-----TSK--YVGQGEKLVRALFAMARELQPSIIFIDEVD 330 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~--~~fv~i~~s~-l-----~~~--~~g~~~~~~~~lf~~a~~~~p~iLfLDEId 330 (502)
+..++|.||+|+||||++++++.... ...+.++... + ... +........+..+..+....|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 46799999999999999999998763 2233333221 1 000 110011122445566667889999999985
Q ss_pred c
Q psy2637 331 S 331 (502)
Q Consensus 331 ~ 331 (502)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 3
No 233
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.06 E-value=0.0038 Score=61.89 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=28.2
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEeecc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISAA 295 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s 295 (502)
.-++|.||+|+|||++|..+|+.++..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4578899999999999999999988776655543
No 234
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.05 E-value=0.0042 Score=56.96 Aligned_cols=28 Identities=29% Similarity=0.621 Sum_probs=23.8
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCce
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATF 289 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~f 289 (502)
++|+|.||+|+|||+|++.+.+.....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5689999999999999999998864333
No 235
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.04 E-value=0.015 Score=63.18 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=21.0
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
...++++|+||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3678999999999999988877654
No 236
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.02 E-value=0.0049 Score=55.77 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=27.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc---CceEEeec
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN---ATFFSISA 294 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~---~~fv~i~~ 294 (502)
++..++|.|++|+||||+++.++..++ .++..++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 356788999999999999999999873 33444443
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.96 E-value=0.0044 Score=56.08 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.9
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
+..+.|.||+|+||||+++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45788999999999999999998763
No 238
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=95.93 E-value=5.9e-05 Score=68.56 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=49.2
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++..+.+++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 60 ~lp~~~g~~~~~~l~~~~~~~~ii~lt~~-------~~~~~~~~a~~~Ga~~~l~KP~~~~ 113 (184)
T 3rqi_A 60 HLGNDSGLSLIAPLCDLQPDARILVLTGY-------ASIATAVQAVKDGADNYLAKPANVE 113 (184)
T ss_dssp EETTEESHHHHHHHHHHCTTCEEEEEESS-------CCHHHHHHHHHHTCSEEEESSCCHH
T ss_pred cCCCccHHHHHHHHHhcCCCCCEEEEeCC-------CCHHHHHHHHHhCHHHheeCCCCHH
Confidence 48999999999999999999999999998 88889999999999 9999999874
No 239
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.93 E-value=0.0042 Score=62.35 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=27.7
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEeec
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISA 294 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~ 294 (502)
..|+|.||+|+|||++|+.||+.++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 368899999999999999999999866665543
No 240
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.89 E-value=0.0046 Score=57.51 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=25.2
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
..|.|.|++|+||||+++.++. ++.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 5688999999999999999998 77665543
No 241
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.88 E-value=0.0035 Score=58.02 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=28.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCceEEeecc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFSISAA 295 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s 295 (502)
.+..++|.||||+|||++|..+++... +++..+..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~ 67 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRV 67 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence 457899999999999999999999876 66555443
No 242
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.88 E-value=0.0049 Score=57.27 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=27.1
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
..+.|+|++|+|||++++.+++.++.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4689999999999999999999998776543
No 243
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=95.87 E-value=0.01 Score=46.85 Aligned_cols=43 Identities=26% Similarity=0.286 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhhchhccCCchHHHHHHHHHHHHHHHHhHhhh
Q psy2637 128 HHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNC 172 (502)
Q Consensus 128 ~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~d~l~k~~~~~~ 172 (502)
...+|+.++..|. ..|.+|++++|+.+|+.|+++|.+.++.+.
T Consensus 7 ~~~~Ai~lv~~Av--e~D~~g~y~eAl~lY~~aie~l~~~lk~e~ 49 (83)
T 2v6y_A 7 LEDMARKYAILAV--KADKEGKVEDAITYYKKAIEVLSQIIVLYP 49 (83)
T ss_dssp HHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHH--HHHHhccHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4568999999998 678899999999999999999999988753
No 244
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.86 E-value=0.0038 Score=57.61 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=25.2
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc-cCceEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC-NATFFS 291 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~-~~~fv~ 291 (502)
+..+.|.|++|+||||+++.++..+ +.+++.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 4567899999999999999999877 544443
No 245
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.86 E-value=0.0045 Score=57.44 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.7
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
++..+.|.||+|+||||+++.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456788999999999999999998874
No 246
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.86 E-value=0.51 Score=46.71 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=27.3
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeec
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISA 294 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~ 294 (502)
.++..++++|++|+||||++..+|..+ +..+.-+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345678899999999999999999876 444444443
No 247
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.85 E-value=0.024 Score=56.13 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=26.8
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEee
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSIS 293 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~ 293 (502)
.++.-++|.|+||+|||++|..++... +.+.+.++
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 345678999999999999999998765 34555544
No 248
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.82 E-value=0.0047 Score=56.56 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.6
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
+..+.|.||+|+||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678899999999999999999876
No 249
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.78 E-value=0.0063 Score=57.50 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=27.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
.+..+.|.|++|+|||++++.++..++.+++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 44678999999999999999999998876654
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.77 E-value=0.0084 Score=55.48 Aligned_cols=27 Identities=33% Similarity=0.520 Sum_probs=23.8
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
++..+.|.||+|+||||+++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456788999999999999999999874
No 251
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.76 E-value=0.08 Score=52.80 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=23.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+||||+++.++..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999876
No 252
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.74 E-value=0.0063 Score=56.42 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=29.1
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc----CceEEeeccch
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN----ATFFSISAASL 297 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~----~~fv~i~~s~l 297 (502)
+..++|.|++|+||||+++.++..++ .+++.++...+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 46788999999999999999999774 45666664433
No 253
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.73 E-value=0.0064 Score=55.65 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.8
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
+..+.|.||+|+||||+++.++....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998753
No 254
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.71 E-value=0.0045 Score=60.62 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=24.1
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc-cCceE
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC-NATFF 290 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~-~~~fv 290 (502)
..|+|.|+||+||||+|+.+++.. +.+++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 458899999999999999999974 54444
No 255
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.69 E-value=0.0073 Score=54.74 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.3
Q ss_pred ceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~ 286 (502)
.+.|.||+|+||||+++.++...+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 478999999999999999998654
No 256
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.69 E-value=0.028 Score=58.08 Aligned_cols=69 Identities=14% Similarity=0.247 Sum_probs=40.5
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccC---ceEEeeccchhh--------hhhhhhHHHHHHHHHHHHhcCCeEEEEcCC
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNA---TFFSISAASLTS--------KYVGQGEKLVRALFAMARELQPSIIFIDEV 329 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~---~fv~i~~s~l~~--------~~~g~~~~~~~~lf~~a~~~~p~iLfLDEI 329 (502)
...++|.||+|+||||++++++...+. .++.+. ..+.. .......-.....+..+....|.++++.|+
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e-d~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE-DPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE-SSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec-ccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 456899999999999999999987732 222221 11100 000001111233444555568899999986
Q ss_pred c
Q psy2637 330 D 330 (502)
Q Consensus 330 d 330 (502)
-
T Consensus 246 R 246 (418)
T 1p9r_A 246 R 246 (418)
T ss_dssp C
T ss_pred C
Confidence 4
No 257
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=95.68 E-value=0.00053 Score=64.30 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=49.0
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++..|.+++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 56 ~lp~~~g~~~~~~lr~~~~~~~ii~lt~~-------~~~~~~~~~~~~Ga~~~l~Kp~~~~ 109 (225)
T 3c3w_A 56 RLPDGNGIELCRDLLSRMPDLRCLILTSY-------TSDEAMLDAILAGASGYVVKDIKGM 109 (225)
T ss_dssp EETTEEHHHHHHHHHHHCTTCEEEEGGGS-------SSHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCcEEEEECC-------CCHHHHHHHHHCCCCEEEECCCCHH
Confidence 48999999999999999999999999998 78889999999999 9999999884
No 258
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.68 E-value=0.0058 Score=62.64 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=27.3
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
..++|.||+|+|||++|..+|+.++..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 45789999999999999999999887666544
No 259
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.63 E-value=0.023 Score=52.13 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=25.6
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc---cCceEEe
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC---NATFFSI 292 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i 292 (502)
+..+.|.|++|+||||+++.++..+ +.+++.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 4568899999999999999999876 4454444
No 260
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.60 E-value=0.0058 Score=63.21 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=25.8
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
+.-|+|+|+||+||||+|+.+++.++..++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 4568889999999999999999988755443
No 261
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.59 E-value=0.0059 Score=59.63 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=24.5
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
+..|.|+|++|+||||+|+.++ .++.+++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 3458899999999999999999 56765543
No 262
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=95.57 E-value=0.027 Score=45.43 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhhchhccCCchHHHHHHHHHHHHHHHHhHhh
Q psy2637 128 HHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVN 171 (502)
Q Consensus 128 ~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~d~l~k~~~~~ 171 (502)
...+|+.++..|. ..|.+++++.|+.+|+.|+++|.+.+..+
T Consensus 11 ~l~~Ai~lv~~Av--e~D~~g~y~eAl~~Y~~Aie~l~~alk~e 52 (93)
T 1wfd_A 11 DSTAAVAVLKRAV--ELDAESRYQQALVCYQEGIDMLLQVLKGT 52 (93)
T ss_dssp HHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH--HHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 3458999999998 67788999999999999999999988764
No 263
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.57 E-value=0.091 Score=51.61 Aligned_cols=72 Identities=17% Similarity=0.102 Sum_probs=43.6
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhh-------hhh---------h----hhHHHHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTS-------KYV---------G----QGEKLVRALFAMAR 317 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~-------~~~---------g----~~~~~~~~lf~~a~ 317 (502)
+..+++.|++|+||||++..+|..+ +..+..+++..... .+. + .........++.+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678889999999999999999876 44555444431110 000 0 11122234555555
Q ss_pred hcCCeEEEEcCCcch
Q psy2637 318 ELQPSIIFIDEVDSV 332 (502)
Q Consensus 318 ~~~p~iLfLDEId~L 332 (502)
.....+++||=...+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 456689999976544
No 264
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.55 E-value=0.008 Score=55.66 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=27.4
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
..|.|.|++|+|||++++.+|+.++.+|+-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 458899999999999999999999999873
No 265
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.54 E-value=0.0077 Score=54.69 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=22.2
Q ss_pred cceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
..+.|.||+|+||||+++.++....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998764
No 266
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=95.54 E-value=0.00027 Score=60.51 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=46.2
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHH-H-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKG-I-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g-~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++..+..++++.++. .+.+.+.++++.| + +|+.||++.+
T Consensus 53 ~lp~~~g~~~~~~l~~~~~~~~ii~~s~~-------~~~~~~~~~~~~~ga~~~l~KP~~~~ 107 (139)
T 2jk1_A 53 RMPGRTGVDFLTEVRERWPETVRIIITGY-------TDSASMMAAINDAGIHQFLTKPWHPE 107 (139)
T ss_dssp CCSSSCHHHHHHHHHHHCTTSEEEEEESC-------TTCHHHHHHHHHTTCCEEEESSCCHH
T ss_pred CCCCCcHHHHHHHHHHhCCCCcEEEEeCC-------CChHHHHHHHHhhchhhhccCCCCHH
Confidence 48999999999999998888888888887 6778889999885 7 9999999874
No 267
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.52 E-value=0.029 Score=61.30 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHhCcCCChhhhhcCCCCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 233 QEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 233 ~~~~~~~l~~~v~~~~~~~~l~~~~~~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.+.+++++..++.. ..-.||.||||||||+++-.+...+
T Consensus 191 N~~Q~~AV~~al~~--------------~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ--------------KELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp CHHHHHHHHHHHHC--------------SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC--------------CCceEEECCCCCCHHHHHHHHHHHH
Confidence 46677777776621 2357899999999998665555443
No 268
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.50 E-value=0.032 Score=55.08 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=23.1
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+||||+++.++..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999876
No 269
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.49 E-value=0.0077 Score=55.56 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=23.3
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
+..+.|.||+|+||||+++.++..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999999876
No 270
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=95.47 E-value=0.00013 Score=62.36 Aligned_cols=53 Identities=15% Similarity=0.071 Sum_probs=45.8
Q ss_pred ccccCcchhhHHHHHHH-HHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEH-HRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~-~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++. .+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 61 ~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~-------~~~~~~~~~~~~ga~~~l~KP~~~~ 115 (133)
T 2r25_B 61 QMPKVDGLLSTKMIRRDLGYTSPIVALTAF-------ADDSNIKECLESGMNGFLSKPIKRP 115 (133)
T ss_dssp CCSSSCHHHHHHHHHHHSCCCSCEEEEESC-------CSHHHHHHHHHTTCSEEEESSCCHH
T ss_pred CCCCCChHHHHHHHHhhcCCCCCEEEEECC-------CCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 49999999999999974 456788888888 77888999999999 9999999874
No 271
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.43 E-value=0.0092 Score=63.35 Aligned_cols=70 Identities=24% Similarity=0.352 Sum_probs=43.6
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc--CceEEeeccc-hhh---hh--------hhhhHHHHHHHHHHHHhcCCeEEEE
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN--ATFFSISAAS-LTS---KY--------VGQGEKLVRALFAMARELQPSIIFI 326 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~--~~fv~i~~s~-l~~---~~--------~g~~~~~~~~lf~~a~~~~p~iLfL 326 (502)
+..++|.||+|+||||++++++.... ...+.+.... +.. .+ .+.....+..++..+..+.|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 46799999999999999999998773 2334333211 110 00 0111112344555666778999999
Q ss_pred cCCc
Q psy2637 327 DEVD 330 (502)
Q Consensus 327 DEId 330 (502)
+|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9984
No 272
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.42 E-value=0.0079 Score=55.34 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.1
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
+..+.|.||+|+||||+++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678999999999999999999865
No 273
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.39 E-value=0.15 Score=49.92 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=43.3
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhh-------hh--------h----h-hhHHHHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTS-------KY--------V----G-QGEKLVRALFAMA 316 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~-------~~--------~----g-~~~~~~~~lf~~a 316 (502)
++..+.++|++|+||||++..+|..+ +..+..+++..... .+ . + ......+..++.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678888999999999999999866 34444333311100 00 0 0 0111223445555
Q ss_pred HhcCCeEEEEcCCcch
Q psy2637 317 RELQPSIIFIDEVDSV 332 (502)
Q Consensus 317 ~~~~p~iLfLDEId~L 332 (502)
....+.+|+||+-..+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 4456789999998544
No 274
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.39 E-value=0.066 Score=56.51 Aligned_cols=36 Identities=8% Similarity=-0.042 Sum_probs=27.4
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc----cCceEEeec
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC----NATFFSISA 294 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~i~~ 294 (502)
.++.-++|.|+||+|||++|..+|... +.+++.++.
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 345668999999999999999998865 345555543
No 275
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.38 E-value=0.032 Score=55.06 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.1
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+||||+++.++..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999876
No 276
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.36 E-value=0.11 Score=53.74 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=45.1
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc----cCceEEeeccchhhhhhh--------------------hhHHHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC----NATFFSISAASLTSKYVG--------------------QGEKLVRALFAM 315 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~i~~s~l~~~~~g--------------------~~~~~~~~lf~~ 315 (502)
++..++++|++|+||||++-.+|..+ +..+.-+++......... .........+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45678899999999999999999766 455555555432211000 011222445555
Q ss_pred HHhcCCeEEEEcCCcch
Q psy2637 316 ARELQPSIIFIDEVDSV 332 (502)
Q Consensus 316 a~~~~p~iLfLDEId~L 332 (502)
+......+++||=...+
T Consensus 179 ~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHTTCSEEEEECCCCC
T ss_pred HHhCCCCEEEEECCCcc
Confidence 55456689999975433
No 277
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=95.36 E-value=0.032 Score=46.98 Aligned_cols=41 Identities=29% Similarity=0.457 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhhchhccCCchHHHHHHHHHHHHHHHHhHhh
Q psy2637 129 HRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVN 171 (502)
Q Consensus 129 ~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~d~l~k~~~~~ 171 (502)
..+|+.++..|+ +.|.+++++.|+.+|+.|+++|.+.+..+
T Consensus 15 l~kAi~lv~~Av--e~D~ag~y~eAl~lY~~Aie~l~~alk~e 55 (117)
T 2cpt_A 15 LQKAIDLASKAA--QEDKAGNYEEALQLYQHAVQYFLHVVKYE 55 (117)
T ss_dssp HHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHH--HHHHccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 347888888888 66778999999999999999999988653
No 278
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.32 E-value=0.01 Score=54.84 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=23.7
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
.+..+.|.||+|+|||+|++.|+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356788999999999999999998864
No 279
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=95.30 E-value=0.039 Score=43.77 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhchhccCCchHHHHHHHHHHHHHHHHhHhh
Q psy2637 129 HRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVN 171 (502)
Q Consensus 129 ~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~d~l~k~~~~~ 171 (502)
..+|+.++..|. ..|.+|+++.|+.+|+.|+++|.+.+..+
T Consensus 13 ~~~A~~lv~~Av--e~D~~g~y~eAl~lY~~Aie~ll~alk~e 53 (86)
T 4a5x_A 13 STAAATVLKRAV--ELDSESRYPQALVCYQEGIDLLLQVLKGT 53 (86)
T ss_dssp HHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 356889999998 66788999999999999999999988764
No 280
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=95.30 E-value=0.00016 Score=60.68 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=46.6
Q ss_pred ccccCcchhhHHHHHHH--HHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEH--HRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~--~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++. .+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 55 ~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~-------~~~~~~~~~~~~Ga~~~l~KP~~~~ 110 (122)
T 3gl9_A 55 MMPVMDGFTVLKKLQEKEEWKRIPVIVLTAK-------GGEEDESLALSLGARKVMRKPFSPS 110 (122)
T ss_dssp CCSSSCHHHHHHHHHTSTTTTTSCEEEEESC-------CSHHHHHHHHHTTCSEEEESSCCHH
T ss_pred cCCCCcHHHHHHHHHhcccccCCCEEEEecC-------CchHHHHHHHhcChhhhccCCCCHH
Confidence 49999999999999875 467888888888 78888999999999 9999999874
No 281
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.23 E-value=0.17 Score=52.28 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=26.8
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeec
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISA 294 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~ 294 (502)
++..+++.|++|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 45678889999999999999999876 344444443
No 282
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=95.23 E-value=0.00021 Score=60.66 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=47.2
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 56 ~l~~~~g~~~~~~l~~~~~~~~ii~~s~~-------~~~~~~~~~~~~ga~~~l~KP~~~~ 109 (132)
T 3crn_A 56 KLPDMEGTELLEKAHKLRPGMKKIMVTGY-------ASLENSVFSLNAGADAYIMKPVNPR 109 (132)
T ss_dssp BCSSSBHHHHHHHHHHHCTTSEEEEEESC-------CCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred CCCCCchHHHHHHHHhhCCCCcEEEEecc-------ccHHHHHHHHhccchhhccCCCCHH
Confidence 48999999999999988888888888887 77888899999999 9999999874
No 283
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.19 E-value=0.11 Score=54.90 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=26.7
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeec
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISA 294 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~ 294 (502)
++..|+|+|++|+||||++..++..+ +..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 35678999999999999999999766 455555554
No 284
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.041 Score=43.50 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhhchhccCCchHHHHHHHHHHHHHHHHhHhh
Q psy2637 129 HRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVN 171 (502)
Q Consensus 129 ~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~d~l~k~~~~~ 171 (502)
..+|+.++..|. +.|.+|+++.|+.+|+.|+++|.+.+..+
T Consensus 10 l~~A~~l~~~Av--~~D~~g~y~eAl~~Y~~aie~l~~a~k~e 50 (85)
T 2v6x_A 10 LTKGIELVQKAI--DLDTATQYEEAYTAYYNGLDYLMLALKYE 50 (85)
T ss_dssp HHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 447888999998 67778999999999999999999888764
No 285
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=95.12 E-value=0.00023 Score=60.21 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=46.7
Q ss_pred ccccCcchhhHHHHHHH--HHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEH--HRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~--~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++. .+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 60 ~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~-------~~~~~~~~~~~~g~~~~l~KP~~~~ 115 (129)
T 3h1g_A 60 NMPEMNGLDLVKKVRSDSRFKEIPIIMITAE-------GGKAEVITALKAGVNNYIVKPFTPQ 115 (129)
T ss_dssp CCSSSCHHHHHHHHHTSTTCTTCCEEEEESC-------CSHHHHHHHHHHTCCEEEESCCCHH
T ss_pred CCCCCCHHHHHHHHHhcCCCCCCeEEEEeCC-------CChHHHHHHHHcCccEEEeCCCCHH
Confidence 48999999999999984 467888999988 78888899999999 9999999874
No 286
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.10 E-value=4.3e-05 Score=71.82 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=39.4
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGI 168 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~ 168 (502)
.||+++|.++++++++..+.....+.++. +..+.+.++++.|+ +|+.||.
T Consensus 34 ~~p~~~g~~~~~~l~~~~~~~~i~vi~~~-------~~~~~~~~~~~~Ga~~~l~kp~ 84 (237)
T 3cwo_X 34 TMPEMNGIDAIKEIMKIDPNAKIIVCSAM-------GQQAMVIEAIKAGAKDFIVNTA 84 (237)
T ss_dssp CSTTSSHHHHHHHHHHHSSSCCEEEECCS-------STHHHHHHHHHTTCCEEEESHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCCEEEEECC-------CCHHHHHHHHHCCHHheEeCCc
Confidence 48999999999999987766444455554 45677889999999 9999983
No 287
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=95.09 E-value=0.00024 Score=60.78 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=46.2
Q ss_pred ccccCcchhhHHHHHHH--HHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEH--HRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~--~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++. .+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 57 ~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~-------~~~~~~~~~~~~ga~~~l~KP~~~~ 112 (136)
T 3t6k_A 57 LLPGIDGYTLCKRVRQHPLTKTLPILMLTAQ-------GDISAKIAGFEAGANDYLAKPFEPQ 112 (136)
T ss_dssp CCSSSCHHHHHHHHHHSGGGTTCCEEEEECT-------TCHHHHHHHHHHTCSEEEETTCCHH
T ss_pred CCCCCCHHHHHHHHHcCCCcCCccEEEEecC-------CCHHHHHHHHhcCcceEEeCCCCHH
Confidence 48999999999999985 456778888887 78888999999999 9999999874
No 288
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=95.09 E-value=0.00018 Score=69.55 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=46.0
Q ss_pred ccccCcchhhHHHHHHHHH--HHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHR--KAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~--~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++..+ ..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 178 ~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~-------~~~~~~~~a~~~Ga~~yl~KP~~~~ 233 (259)
T 3luf_A 178 YMPEIDGISLVRMLRERYSKQQLAIIGISVS-------DKRGLSARYLKQGANDFLNQPFEPE 233 (259)
T ss_dssp CCSSSCHHHHHHHHHHHCCTTTSEEEEEECS-------SSSSHHHHHHHTTCSEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHhccCCCCCeEEEEEcc-------CCHHHHHHHHhcChhheEcCCCCHH
Confidence 4999999999999998765 4567777887 78888999999999 9999999884
No 289
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.07 E-value=0.2 Score=52.63 Aligned_cols=26 Identities=27% Similarity=0.301 Sum_probs=22.9
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.+..++|.||+|+||||+++.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45678899999999999999999876
No 290
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.04 E-value=0.078 Score=54.96 Aligned_cols=34 Identities=32% Similarity=0.301 Sum_probs=27.1
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc---cCceEEeec
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC---NATFFSISA 294 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~ 294 (502)
+..++++|++|+||||++..+|..+ +..+..+++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4679999999999999999999876 345555554
No 291
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.01 E-value=0.015 Score=54.42 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.3
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+||||+++.|+...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45678899999999999999999876
No 292
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.00 E-value=0.064 Score=60.72 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.3
Q ss_pred CcceEEecCCCCcHHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVAT 283 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~ 283 (502)
+..++|+||.|+||||+.|.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 45689999999999999999875
No 293
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=94.99 E-value=0.00013 Score=61.25 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=47.5
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 56 ~l~~~~g~~~~~~l~~~~~~~~ii~~s~~-------~~~~~~~~~~~~ga~~~l~Kp~~~~ 109 (126)
T 1dbw_A 56 RMPDMSGVELLRNLGDLKINIPSIVITGH-------GDVPMAVEAMKAGAVDFIEKPFEDT 109 (126)
T ss_dssp CSTTSCHHHHHHHHHHTTCCCCEEEEECT-------TCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHhcCCCCCEEEEECC-------CCHHHHHHHHHhCHHHheeCCCCHH
Confidence 48999999999999998888888888887 77888999999999 9999998874
No 294
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=94.97 E-value=0.00049 Score=71.80 Aligned_cols=54 Identities=22% Similarity=0.142 Sum_probs=48.0
Q ss_pred ccccCcchhhHHHHHHH--HHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhhh
Q psy2637 112 EMASTVGDTLLATQKEH--HRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVNC 172 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~--~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~~ 172 (502)
.||+++|+++++++++. .+..++|+.++. ++.+.+.++++.|+ +|+.||++.+.
T Consensus 54 ~mp~~~G~~~~~~l~~~~~~~~~pii~lt~~-------~~~~~~~~a~~~Ga~~~l~KP~~~~~ 110 (459)
T 1w25_A 54 MMPGMDGFTVCRKLKDDPTTRHIPVVLITAL-------DGRGDRIQGLESGASDFLTKPIDDVM 110 (459)
T ss_dssp CCSSSCHHHHHHHHHHSTTTTTSCEEEEECS-------SCHHHHHHHHHHTCCEEEESSCCHHH
T ss_pred CCCCCCHHHHHHHHhcCcccCCCCEEEEECC-------CCHHHHHHHHHcCCCEEEeCCCCHHH
Confidence 49999999999999984 457889999998 88899999999999 99999998853
No 295
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.90 E-value=0.016 Score=54.41 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
++..+.|.||+|+|||||++.++....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 456788999999999999999998764
No 296
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.90 E-value=0.12 Score=54.73 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.7
Q ss_pred CCcceEEecCCCCcHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAV 281 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lArai 281 (502)
++..++|.||+|+|||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4577999999999999999994
No 297
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.89 E-value=0.00017 Score=61.95 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=46.9
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 57 ~l~~~~g~~l~~~l~~~~~~~~ii~ls~~-------~~~~~~~~~~~~ga~~~l~KP~~~~ 110 (137)
T 3cfy_A 57 KLPDMSGEDVLDWINQNDIPTSVIIATAH-------GSVDLAVNLIQKGAEDFLEKPINAD 110 (137)
T ss_dssp BCSSSBHHHHHHHHHHTTCCCEEEEEESS-------CCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHhcCCCCCEEEEEec-------CcHHHHHHHHHCCccEEEeCCCCHH
Confidence 48999999999999998888888888887 77888999999999 9999999874
No 298
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.88 E-value=0.051 Score=57.77 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=27.9
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCce---EEeeccch
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNATF---FSISAASL 297 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~f---v~i~~s~l 297 (502)
+..|+++|.||+||||+|+.+++.++..+ ..++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 35688999999999999999999885433 34454443
No 299
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.88 E-value=0.017 Score=53.37 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
++..+.|.||+|+||||+++.|+....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346688999999999999999998874
No 300
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=94.87 E-value=0.00048 Score=59.35 Aligned_cols=55 Identities=18% Similarity=0.084 Sum_probs=42.5
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVNC 172 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~~ 172 (502)
.||+++|++++++++...+ .++++.++.. ..+.+.+.++++.|+ +|+.||++.+.
T Consensus 69 ~l~~~~g~~~~~~lr~~~~-~~iiil~~~~-----~~~~~~~~~~~~~ga~~~l~KP~~~~~ 124 (145)
T 3kyj_B 69 EMPVMDGMEFLRHAKLKTR-AKICMLSSVA-----VSGSPHAARARELGADGVVAKPSGTVS 124 (145)
T ss_dssp TSCCCTTCHHHHHHHHHCC-CEEC-CBSSC-----STTSSHHHHHHHTTCSCCCBCCCSCC-
T ss_pred CCCCCCHHHHHHHHHhcCC-CCeEEEEEec-----cCChHHHHHHHhCCCCEEEeCCCCHHH
Confidence 5899999999999998776 6666666620 145667889999999 99999998743
No 301
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.85 E-value=0.054 Score=54.74 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+||||+++.++..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45678899999999999999999876
No 302
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.83 E-value=0.025 Score=52.07 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=25.2
Q ss_pred CcceEEecCCCCcHH-HHHHHHHHHc--cCceEEee
Q psy2637 261 SRGLLLFGPPGNGKT-MLARAVATAC--NATFFSIS 293 (502)
Q Consensus 261 ~~~vLL~GppGtGKT-~lAraia~~~--~~~fv~i~ 293 (502)
+.-.+++||.|+||| .|.+++.+.. +..++.+.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 455788999999999 8899988755 45555554
No 303
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=94.82 E-value=0.00039 Score=60.51 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=47.5
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHH-H-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKG-I-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g-~-d~l~k~~~~~ 171 (502)
.||+++|++++++++...+..++++.++. .+.+.+.++++.| + +|+.||++.+
T Consensus 57 ~l~~~~g~~~~~~l~~~~~~~~ii~~s~~-------~~~~~~~~~~~~g~~~~~l~KP~~~~ 111 (151)
T 3kcn_A 57 RMPGMEGTEVIQKARLISPNSVYLMLTGN-------QDLTTAMEAVNEGQVFRFLNKPCQMS 111 (151)
T ss_dssp CCSSSCHHHHHHHHHHHCSSCEEEEEECG-------GGHHHHHHHHHHTCCSEEEESSCCHH
T ss_pred CCCCCcHHHHHHHHHhcCCCcEEEEEECC-------CCHHHHHHHHHcCCeeEEEcCCCCHH
Confidence 48999999999999999998888888887 6778889999999 7 9999999874
No 304
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.80 E-value=0.0078 Score=55.44 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.7
Q ss_pred ceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~~ 286 (502)
-|.|.|++|+||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999874
No 305
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=94.79 E-value=0.0001 Score=63.22 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=36.7
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++. +.++++.||+ ++.+.+. +.|+ +|+.||++.+
T Consensus 62 ~mP~~~G~el~~~lr~~--~ipvI~lTa~-------~~~~~~~---~~g~~~yl~KP~~~~ 110 (123)
T 2lpm_A 62 NLDGEPSYPVADILAER--NVPFIFATGY-------GSKGLDT---RYSNIPLLTKPFLDS 110 (123)
T ss_dssp SSSSCCSHHHHHHHHHT--CCSSCCBCTT-------CTTSCCS---SSCSCSCBCSSSSHH
T ss_pred CCCCCCHHHHHHHHHcC--CCCEEEEecC-------ccHHHHH---hCCCCcEEECCCCHH
Confidence 49999999999999974 5789999998 3222222 2356 8999999884
No 306
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.78 E-value=0.02 Score=62.03 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=31.9
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccch
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASL 297 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l 297 (502)
.+..|+|+|.||+||||+|+++++.+ +.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 34568999999999999999999998 888888765433
No 307
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=94.76 E-value=0.00034 Score=59.45 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=47.5
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 58 ~lp~~~g~~~~~~l~~~~~~~~ii~ls~~-------~~~~~~~~~~~~ga~~~l~Kp~~~~ 111 (133)
T 3b2n_A 58 EMPGMTGLEVLAEIRKKHLNIKVIIVTTF-------KRPGYFEKAVVNDVDAYVLKERSIE 111 (133)
T ss_dssp SCSSSCHHHHHHHHHHTTCSCEEEEEESC-------CCHHHHHHHHHTTCSEEEETTSCHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCcEEEEecC-------CCHHHHHHHHHcCCcEEEECCCCHH
Confidence 48999999999999998888888988887 77888999999999 9999998873
No 308
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.76 E-value=0.018 Score=51.10 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||.|+||||+++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34568899999999999999999987
No 309
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=94.65 E-value=0.00038 Score=57.67 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=47.3
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+.+++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 56 ~l~~~~g~~~~~~l~~~~~~~~ii~~s~~-------~~~~~~~~~~~~g~~~~l~KP~~~~ 109 (120)
T 1tmy_A 56 TMPEMNGIDAIKEIMKIDPNAKIIVCSAM-------GQQAMVIEAIKAGAKDFIVKPFQPS 109 (120)
T ss_dssp SCGGGCHHHHHHHHHHHCTTCCEEEEECT-------TCHHHHHHHHHTTCCEEEESSCCHH
T ss_pred CCCCCcHHHHHHHHHhhCCCCeEEEEeCC-------CCHHHHHHHHHhCcceeEeCCCCHH
Confidence 48999999999999998888888888887 77888899999999 9999999874
No 310
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.63 E-value=0.13 Score=53.72 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=21.8
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
+..++|+||+|+|||+|++.++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 4568999999999999999988765
No 311
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=94.62 E-value=0.0005 Score=57.38 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=47.2
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 56 ~l~~~~g~~~~~~l~~~~~~~~ii~~s~~-------~~~~~~~~~~~~g~~~~l~KP~~~~ 109 (124)
T 1srr_A 56 KIPGMDGIEILKRMKVIDENIRVIIMTAY-------GELDMIQESKELGALTHFAKPFDID 109 (124)
T ss_dssp CCTTCCHHHHHHHHHHHCTTCEEEEEESS-------CCHHHHHHHHHHTCCCEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCCEEEEEcc-------CchHHHHHHHhcChHhhccCCCCHH
Confidence 48999999999999998888888888887 77788899999999 9999999874
No 312
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=94.62 E-value=0.0003 Score=61.36 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=48.1
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHH-H-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKG-I-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g-~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++.++..++|+.++. .+.+.+.++++.| + +|+.||++.+
T Consensus 67 ~l~~~~g~~~~~~l~~~~~~~~ii~~s~~-------~~~~~~~~~~~~g~~~~~l~KP~~~~ 121 (153)
T 3hv2_A 67 HLPQMDGPTLLARIHQQYPSTTRILLTGD-------PDLKLIAKAINEGEIYRYLSKPWDDQ 121 (153)
T ss_dssp CCSSSCHHHHHHHHHHHCTTSEEEEECCC-------CCHHHHHHHHHTTCCSEEECSSCCHH
T ss_pred CCCcCcHHHHHHHHHhHCCCCeEEEEECC-------CCHHHHHHHHhCCCcceEEeCCCCHH
Confidence 48999999999999998899999998887 7888999999999 8 9999999874
No 313
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.62 E-value=0.018 Score=52.41 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=27.7
Q ss_pred eEEecCCCCcHHHHHHHHHHHccCceEEeeccc
Q psy2637 264 LLLFGPPGNGKTMLARAVATACNATFFSISAAS 296 (502)
Q Consensus 264 vLL~GppGtGKT~lAraia~~~~~~fv~i~~s~ 296 (502)
+|++|++|+|||++|..++.. +.+.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 77877777654
No 314
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.61 E-value=0.019 Score=54.38 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=26.4
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEe
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSI 292 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i 292 (502)
..+-|.|+||+||||+|+.|++.++.+++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 4567899999999999999999998776543
No 315
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.61 E-value=0.017 Score=54.79 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=23.9
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNAT 288 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~ 288 (502)
+..+-|.||+|+||||+++.++..++..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3457899999999999999999987643
No 316
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.59 E-value=0.019 Score=54.09 Aligned_cols=30 Identities=13% Similarity=0.263 Sum_probs=27.0
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEE
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFS 291 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~ 291 (502)
..|.|.|++|+|||++++.+|+.++.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 467899999999999999999999988864
No 317
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.58 E-value=0.11 Score=58.89 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.4
Q ss_pred cceEEecCCCCcHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVAT 283 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~ 283 (502)
..++|+||.|+||||+.|.++-
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999954
No 318
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=94.55 E-value=0.00017 Score=62.16 Aligned_cols=53 Identities=13% Similarity=0.038 Sum_probs=40.7
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 58 ~lp~~~g~~l~~~l~~~~~~~~ii~ls~~-------~~~~~~~~~~~~ga~~~l~KP~~~~ 111 (141)
T 3cu5_A 58 RMPRMDGIELVDNILKLYPDCSVIFMSGY-------SDKEYLKAAIKFRAIRYVEKPIDPS 111 (141)
T ss_dssp CCSSSCHHHHHHHHHHHCTTCEEEEECCS-------TTTCCC------CCCEEECSSCCHH
T ss_pred CCCCCCHHHHHHHHHhhCCCCcEEEEeCC-------CcHHHHHHHHhCCccEEEeCCCCHH
Confidence 48999999999999998888888888887 56667788889999 9999999874
No 319
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.49 E-value=0.022 Score=53.79 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=23.4
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
+.-|.|.|++|+||||+++.+++.++
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45688899999999999999999986
No 320
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.46 E-value=0.072 Score=56.61 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=45.8
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc---cCceEEeeccchhhh-------------------hh-------h--hhHH
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC---NATFFSISAASLTSK-------------------YV-------G--QGEK 307 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~~s~l~~~-------------------~~-------g--~~~~ 307 (502)
.++..++|.||+|+|||++++.++... +.+.+.+...+-... .. . ....
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~ 358 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLED 358 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHH
Confidence 345678999999999999999999765 333333332211000 00 0 1122
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCcchh
Q psy2637 308 LVRALFAMARELQPSIIFIDEVDSVL 333 (502)
Q Consensus 308 ~~~~lf~~a~~~~p~iLfLDEId~L~ 333 (502)
..+.++..+...+|.+|+||=+..+.
T Consensus 359 ~q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 359 HLQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHHhhCCCEEEEcChHHHH
Confidence 33445566666789999999665553
No 321
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=94.43 E-value=0.00037 Score=59.79 Aligned_cols=53 Identities=25% Similarity=0.243 Sum_probs=47.7
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++..+.+++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 58 ~l~~~~g~~~~~~l~~~~~~~~ii~ls~~-------~~~~~~~~~~~~g~~~~l~kp~~~~ 111 (143)
T 3jte_A 58 KMPKLSGMDILREIKKITPHMAVIILTGH-------GDLDNAILAMKEGAFEYLRKPVTAQ 111 (143)
T ss_dssp CCSSSCHHHHHHHHHHHCTTCEEEEEECT-------TCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred CCCCCcHHHHHHHHHHhCCCCeEEEEECC-------CCHHHHHHHHHhCcceeEeCCCCHH
Confidence 48999999999999999998888888887 78888999999999 8999998874
No 322
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=94.43 E-value=0.00071 Score=58.97 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=46.9
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.+++++++...+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 56 ~l~~~~g~~~~~~l~~~~~~~pii~ls~~-------~~~~~~~~~~~~g~~~~l~kP~~~~ 109 (155)
T 1qkk_A 56 RMPGMDGLALFRKILALDPDLPMILVTGH-------GDIPMAVQAIQDGAYDFIAKPFAAD 109 (155)
T ss_dssp CCSSSCHHHHHHHHHHHCTTSCEEEEECG-------GGHHHHHHHHHTTCCEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHhhCCCCCEEEEECC-------CChHHHHHHHhcCCCeEEeCCCCHH
Confidence 48999999999999999888888888887 66778899999999 9999999874
No 323
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.42 E-value=0.015 Score=54.67 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=16.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHH-HHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVA-TAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia-~~~ 285 (502)
++..+.|.||+|+||||+++.++ ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34568899999999999999999 765
No 324
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.40 E-value=0.044 Score=53.69 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=23.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
.+..|.|.||+|+||||+++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345688999999999999999999875
No 325
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.36 E-value=0.018 Score=56.39 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=23.5
Q ss_pred cceEEecCCCCcHHHHHHHHHHHcc---CceEEeeccc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACN---ATFFSISAAS 296 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~---~~fv~i~~s~ 296 (502)
.-|.|.||+|+||||+|+.+++.++ ..+..+++.+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~ 43 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA 43 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecch
Confidence 4588999999999999999999775 2334444443
No 326
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.34 E-value=0.024 Score=56.02 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=24.8
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccC
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNA 287 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~ 287 (502)
.++..+.|+||+|+|||||++.|+.....
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G 152 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFLGG 152 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhcCc
Confidence 34577899999999999999999988733
No 327
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.32 E-value=0.022 Score=51.49 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.2
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHH
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~ 284 (502)
..+.++||.|++|+|||++|.++.+.
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 34679999999999999999999885
No 328
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=94.30 E-value=0.00019 Score=62.00 Aligned_cols=53 Identities=9% Similarity=0.067 Sum_probs=48.3
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|++++++++..++.+++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 76 ~l~~~~g~~~~~~l~~~~~~~~ii~lt~~-------~~~~~~~~~~~~ga~~~l~Kp~~~~ 129 (146)
T 4dad_A 76 AALDTAELAAIEKLSRLHPGLTCLLVTTD-------ASSQTLLDAMRAGVRDVLRWPLEPR 129 (146)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCEEEEEESC-------CCHHHHHHHHTTTEEEEEESSCCHH
T ss_pred CCCCccHHHHHHHHHHhCCCCcEEEEeCC-------CCHHHHHHHHHhCCceeEcCCCCHH
Confidence 48999999999999999999999999988 78889999999999 9999998874
No 329
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.27 E-value=0.19 Score=50.53 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.2
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
...|.|+|+||+|||+++..++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998875
No 330
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.26 E-value=0.026 Score=51.68 Aligned_cols=24 Identities=42% Similarity=0.693 Sum_probs=21.5
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~ 285 (502)
..+.|.||+|+||||+++.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 357899999999999999999875
No 331
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=94.24 E-value=0.00027 Score=58.63 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=46.8
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 53 ~l~~~~g~~~~~~l~~~~~~~~ii~~s~~-------~~~~~~~~~~~~g~~~~l~kp~~~~ 106 (121)
T 2pl1_A 53 GLPDEDGLSLIRRWRSNDVSLPILVLTAR-------ESWQDKVEVLSAGADDYVTKPFHIE 106 (121)
T ss_dssp CCSSSCHHHHHHHHHHTTCCSCEEEEESC-------CCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHhcCCCCCEEEEecC-------CCHHHHHHHHHcCccceEECCCCHH
Confidence 48999999999999988888888888887 77788899999999 9999999874
No 332
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=94.22 E-value=0.001 Score=61.15 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=47.6
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++..+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 57 ~lp~~~g~~~~~~l~~~~~~~~ii~ls~~-------~~~~~~~~a~~~Ga~~~l~Kp~~~~ 110 (208)
T 1yio_A 57 RMPGMSGIELQEQLTAISDGIPIVFITAH-------GDIPMTVRAMKAGAIEFLPKPFEEQ 110 (208)
T ss_dssp CCSSSCHHHHHHHHHHTTCCCCEEEEESC-------TTSCCCHHHHHTTEEEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHhcCCCCCEEEEeCC-------CCHHHHHHHHHCCCcEEEeCCCCHH
Confidence 48999999999999999888999999988 67777889999999 9999999874
No 333
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=94.20 E-value=0.00031 Score=59.84 Aligned_cols=53 Identities=6% Similarity=-0.059 Sum_probs=48.3
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+..++++.++. .+.+...++++.|+ +|+.||++.+
T Consensus 68 ~l~~~~g~~~~~~l~~~~~~~~ii~~s~~-------~~~~~~~~~~~~g~~~~l~KP~~~~ 121 (135)
T 3snk_A 68 GGGDLLGKPGIVEARALWATVPLIAVSDE-------LTSEQTRVLVRMNASDWLHKPLDGK 121 (135)
T ss_dssp ETTGGGGSTTHHHHHGGGTTCCEEEEESC-------CCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred CCCCchHHHHHHHHHhhCCCCcEEEEeCC-------CCHHHHHHHHHcCcHhhccCCCCHH
Confidence 48999999999999999999999999988 78888999999999 9999999874
No 334
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=94.20 E-value=0.0003 Score=61.15 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=45.7
Q ss_pred ccccCcchhhHHHHHHHH--HHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHH--RKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~--~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++.. +..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 70 ~lp~~~g~~l~~~l~~~~~~~~~piiils~~-------~~~~~~~~~~~~ga~~~l~KP~~~~ 125 (149)
T 1i3c_A 70 NLPKKDGREVLAEIKQNPDLKRIPVVVLTTS-------HNEDDVIASYELHVNCYLTKSRNLK 125 (149)
T ss_dssp CCSSSCHHHHHHHHHHCTTTTTSCEEEEESC-------CCHHHHHHHHHTTCSEEEECCSSHH
T ss_pred CCCCCcHHHHHHHHHhCcCcCCCeEEEEECC-------CChHHHHHHHHcCCcEEEECCCCHH
Confidence 489999999999999863 56778888887 77788999999999 9999999874
No 335
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.17 E-value=0.032 Score=51.25 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=21.2
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
+.-.+++||.|+|||+.+-.++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3567889999999999988888776
No 336
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=94.17 E-value=0.00062 Score=65.38 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=47.9
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+..++++.++. ...+...++++.|+ +|+.||++.+
T Consensus 182 ~mp~~~G~~l~~~ir~~~~~~piI~lt~~-------~~~~~~~~~~~~G~~~~l~KP~~~~ 235 (254)
T 2ayx_A 182 NMPNMDGYRLTQRIRQLGLTLPVIGVTAN-------ALAEEKQRCLESGMDSCLSKPVTLD 235 (254)
T ss_dssp SSCSSCCHHHHHHHHHHHCCSCEEEEESS-------TTSHHHHHHHHCCCEEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHhcCCCCcEEEEECC-------CCHHHHHHHHHcCCceEEECCCCHH
Confidence 48999999999999999888889999988 77788899999999 9999999874
No 337
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=94.12 E-value=0.0014 Score=65.69 Aligned_cols=54 Identities=20% Similarity=0.090 Sum_probs=47.4
Q ss_pred ccccCcchhhHHHHHHH--HHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhhh
Q psy2637 112 EMASTVGDTLLATQKEH--HRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVNC 172 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~--~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~~ 172 (502)
.||+++|+++++++++. .+..++++.++. .+.+.+.++++.|+ +|+.||++.+.
T Consensus 72 ~mp~~~G~~~~~~l~~~~~~~~~~ii~~s~~-------~~~~~~~~a~~~Ga~~~l~Kp~~~~~ 128 (358)
T 3bre_A 72 VMPGVDGLTLLAAYRGNPATRDIPIIVLSTK-------EEPTVKSAAFAAGANDYLVKLPDAIE 128 (358)
T ss_dssp BCSSSBHHHHHHHHTTSTTTTTSCEEEEESS-------CCHHHHHHHHHTTCSEEEESCCCHHH
T ss_pred CCCCCCHHHHHHHHhcCcccCCCcEEEEeCC-------CCHHHHHHHHhcChheEeeccCCHHH
Confidence 48999999999999975 567888999998 78889999999999 99999998743
No 338
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.08 E-value=0.1 Score=54.50 Aligned_cols=27 Identities=22% Similarity=0.424 Sum_probs=23.8
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccC
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNA 287 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~ 287 (502)
+..|++.|.||+|||++++.+++.++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 457899999999999999999998753
No 339
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.07 E-value=0.032 Score=60.00 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=30.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc----CceEEeeccc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN----ATFFSISAAS 296 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~----~~fv~i~~s~ 296 (502)
.+..|+|+|++|+||||+|+++++.++ .+++.++...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 345688999999999999999999985 6777776544
No 340
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=94.02 E-value=0.00041 Score=58.51 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=45.0
Q ss_pred ccccCcchhhHHHHHHH-HHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEH-HRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~-~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++. .+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 57 ~l~~~~g~~~~~~l~~~~~~~~~ii~ls~~-------~~~~~~~~~~~~ga~~~l~KP~~~~ 111 (130)
T 1dz3_A 57 IMPHLDGLAVLERIRAGFEHQPNVIMLTAF-------GQEDVTKKAVELGASYFILKPFDME 111 (130)
T ss_dssp CCSSSCHHHHHHHHHHHCSSCCEEEEEEET-------TCHHHHHHHHHTTCEEEEECSSCCT
T ss_pred CCCCCCHHHHHHHHHhcCCCCCcEEEEecC-------CCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 48999999999999985 456667778887 77888899999999 9999998774
No 341
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=94.01 E-value=0.00045 Score=60.04 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=47.1
Q ss_pred ccccCcchhhHHHHHH--HHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKE--HHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~--~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++ ..+..++++.++. .+.+...++++.|+ +|+.||++.+
T Consensus 68 ~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~-------~~~~~~~~~~~~g~~~~l~KP~~~~ 123 (152)
T 3heb_A 68 NLPDMTGIDILKLVKENPHTRRSPVVILTTT-------DDQREIQRCYDLGANVYITKPVNYE 123 (152)
T ss_dssp BCSSSBHHHHHHHHHHSTTTTTSCEEEEESC-------CCHHHHHHHHHTTCSEEEECCSSHH
T ss_pred CCCCCcHHHHHHHHHhcccccCCCEEEEecC-------CCHHHHHHHHHCCCcEEEeCCCCHH
Confidence 4899999999999999 7788889999987 77788889999999 9999999873
No 342
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=93.99 E-value=0.0015 Score=59.57 Aligned_cols=53 Identities=4% Similarity=-0.066 Sum_probs=45.1
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVNC 172 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~~ 172 (502)
.||+++|. +++.++...+..++++.++. .+.+.+.++++.|+ +|+.||++.+.
T Consensus 61 ~mp~~~g~-l~~~~~~~~~~~~ii~lt~~-------~~~~~~~~a~~~ga~~~l~KP~~~~~ 114 (196)
T 1qo0_D 61 FQNRHHDE-IAALLAAGTPRTTLVALVEY-------ESPAVLSQIIELECHGVITQPLDAHR 114 (196)
T ss_dssp CSSTHHHH-HHHHHHHSCTTCEEEEEECC-------CSHHHHHHHHHHTCSEEEESSCCGGG
T ss_pred CCCccchH-HHHHHhccCCCCCEEEEEcC-------CChHHHHHHHHcCCCeeEecCcCHHH
Confidence 48999998 87777765578889999998 78888999999999 89999998853
No 343
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=93.98 E-value=0.0004 Score=66.26 Aligned_cols=53 Identities=17% Similarity=0.060 Sum_probs=48.7
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++..+.+++++.++. .+.+.++++++.|+ +|+.||++.+
T Consensus 76 ~lp~~~g~~~~~~lr~~~~~~~ii~lt~~-------~~~~~~~~~~~~Ga~~yl~Kp~~~~ 129 (250)
T 3r0j_A 76 XMPGMDGFGVLRRLRADGIDAPALFLTAR-------DSLQDKIAGLTLGGDDYVTKPFSLE 129 (250)
T ss_dssp CCSSSCHHHHHHHHHHTTCCCCEEEEECS-------TTHHHHHHHHTSTTCEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHhcCCCCCEEEEECC-------CCHHHHHHHHHcCCcEEEeCCCCHH
Confidence 48999999999999999888999999998 78888999999999 9999999874
No 344
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=93.90 E-value=0.00042 Score=57.78 Aligned_cols=52 Identities=8% Similarity=-0.012 Sum_probs=44.8
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++.. ..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 55 ~~p~~~g~~~~~~lr~~~-~~~ii~~t~~-------~~~~~~~~~~~~ga~~~l~KP~~~~ 107 (120)
T 3f6p_A 55 MLPNKDGVEVCREVRKKY-DMPIIMLTAK-------DSEIDKVIGLEIGADDYVTKPFSTR 107 (120)
T ss_dssp TSTTTHHHHHHHHHHTTC-CSCEEEEEES-------SCHHHHHHHHHTTCCEEEEESCCHH
T ss_pred CCCCCCHHHHHHHHHhcC-CCCEEEEECC-------CChHHHHHHHhCCcceeEcCCCCHH
Confidence 489999999999999754 5777888877 77788899999999 9999999874
No 345
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.87 E-value=0.028 Score=53.25 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=23.1
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||||++.++...
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345678899999999999999999754
No 346
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.87 E-value=0.032 Score=54.36 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.9
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..++|.||||+|||++++.++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999865
No 347
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.87 E-value=0.032 Score=55.29 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=23.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
++..+.|.||+|+||||+++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 345688999999999999999998763
No 348
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.77 E-value=0.12 Score=57.53 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=19.4
Q ss_pred CcceEEecCCCCcHHHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~ 284 (502)
...+++.||+|+|||+++..+...
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999977766543
No 349
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=93.75 E-value=0.00054 Score=58.27 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=47.5
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+..++++.++. .+.+...++++.|+ +|+.||++.+
T Consensus 60 ~l~~~~g~~~~~~l~~~~~~~~ii~~s~~-------~~~~~~~~~~~~g~~~~l~kP~~~~ 113 (137)
T 3hdg_A 60 RMPKLGGLEMLDRIKAGGAKPYVIVISAF-------SEMKYFIKAIELGVHLFLPKPIEPG 113 (137)
T ss_dssp SCSSSCHHHHHHHHHHTTCCCEEEECCCC-------CCHHHHHHHHHHCCSEECCSSCCHH
T ss_pred CCCCCCHHHHHHHHHhcCCCCcEEEEecC-------cChHHHHHHHhCCcceeEcCCCCHH
Confidence 48999999999999999888888888887 77788899999999 9999999874
No 350
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=93.70 E-value=0.00023 Score=66.70 Aligned_cols=53 Identities=11% Similarity=-0.029 Sum_probs=48.0
Q ss_pred ccccCcchhhHHHHHH-HHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKE-HHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~-~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++ .+|.+++++.++. .+.+....+++.|+ +|+.||++.+
T Consensus 63 ~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~-------~~~~~~~~~~~~Ga~~~l~Kp~~~~ 117 (225)
T 3klo_A 63 SRISDDVLTDYSSFKHISCPDAKEVIINCP-------QDIEHKLLFKWNNLAGVFYIDDDMD 117 (225)
T ss_dssp GGCCHHHHHHHHHHHHHHCTTCEEEEEEEC-------TTCCHHHHTTSTTEEEEEETTCCHH
T ss_pred CCCCCCHHHHHHHHHHhhCCCCcEEEEECC-------cchhHHHHHHHhCCCEEEecCCCHH
Confidence 4899999999999999 7899999999998 77778889999999 9999999874
No 351
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.68 E-value=0.056 Score=58.75 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=19.9
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~ 285 (502)
...+|.||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 467999999999999887776654
No 352
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.68 E-value=0.032 Score=52.94 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.3
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||||++.|+...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999999864
No 353
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.68 E-value=0.038 Score=54.47 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.8
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
+..+.|.||+|+||||+++.|+..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45688999999999999999998764
No 354
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.64 E-value=0.03 Score=52.68 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||++.++...
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45668899999999999999999754
No 355
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=93.62 E-value=0.0014 Score=56.48 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=44.3
Q ss_pred ccccCcchhhHHHHHHHHHH----HHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRK----AFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~----a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.+++++++...+. .++++.++. .+.+...++++.|+ +|+.||+..+
T Consensus 67 ~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~-------~~~~~~~~~~~~Ga~~~l~KP~~~~ 124 (143)
T 3m6m_D 67 HMPGMNGLDMLKQLRVMQASGMRYTPVVVLSAD-------VTPEAIRACEQAGARAFLAKPVVAA 124 (143)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESC-------CCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHhchhccCCCCeEEEEeCC-------CCHHHHHHHHHcChhheeeCCCCHH
Confidence 48999999999999976543 567777776 77778889999999 9999999874
No 356
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.62 E-value=0.17 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.0
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
+..+.|.||||+||||+.+.++...
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568899999999999999999764
No 357
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.61 E-value=0.48 Score=49.62 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=19.1
Q ss_pred cceEEecCCCCcHHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~ 284 (502)
..+++.+|+|+|||..+-..+..
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 67999999999999987666544
No 358
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=93.57 E-value=0.37 Score=45.02 Aligned_cols=17 Identities=47% Similarity=0.690 Sum_probs=15.1
Q ss_pred cceEEecCCCCcHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLA 278 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lA 278 (502)
..+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56999999999999864
No 359
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=93.56 E-value=0.00077 Score=57.44 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=48.4
Q ss_pred cccc--CcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMAS--TVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~--~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+ ++|.++++++++..+.+++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 59 ~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~-------~~~~~~~~~~~~ga~~~l~KP~~~~ 114 (136)
T 3kto_A 59 HLEDKKDSGIELLETLVKRGFHLPTIVMASS-------SDIPTAVRAMRASAADFIEKPFIEH 114 (136)
T ss_dssp TGGGBTTHHHHHHHHHHHTTCCCCEEEEESS-------CCHHHHHHHHHTTCSEEEESSBCHH
T ss_pred cCCCCCccHHHHHHHHHhCCCCCCEEEEEcC-------CCHHHHHHHHHcChHHheeCCCCHH
Confidence 4899 9999999999999989999999988 78888999999999 9999999874
No 360
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=93.56 E-value=0.00046 Score=57.33 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=45.0
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++ .+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 55 ~l~~~~g~~~~~~l~~-~~~~~ii~~s~~-------~~~~~~~~~~~~ga~~~l~Kp~~~~ 107 (122)
T 1zgz_A 55 NLPDENGLMLTRALRE-RSTVGIILVTGR-------SDRIDRIVGLEMGADDYVTKPLELR 107 (122)
T ss_dssp CCSSSCHHHHHHHHHT-TCCCEEEEEESS-------CCHHHHHHHHHHTCSEEEESSCCHH
T ss_pred CCCCCChHHHHHHHHh-cCCCCEEEEECC-------CChhhHHHHHHhCHHHHccCCCCHH
Confidence 4899999999999998 667778888877 77788899999999 9999998874
No 361
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.48 E-value=0.047 Score=48.83 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.1
Q ss_pred cceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
...+|+||+|+|||+++++|+..++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4678999999999999999998764
No 362
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=93.44 E-value=0.00057 Score=63.28 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=48.0
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++..+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 60 ~lp~~~g~~~~~~lr~~~~~~~ii~ls~~-------~~~~~~~~~~~~Ga~~~l~Kp~~~~ 113 (215)
T 1a04_A 60 NMPGMNGLETLDKLREKSLSGRIVVFSVS-------NHEEDVVTALKRGADGYLLKDMEPE 113 (215)
T ss_dssp TSTTSCHHHHHHHHHHSCCCSEEEEEECC-------CCHHHHHHHHHTTCSEEEETTCCHH
T ss_pred CCCCCcHHHHHHHHHHhCCCCcEEEEECC-------CCHHHHHHHHHcCCcEEEeCCCCHH
Confidence 48999999999999998888889999888 77888999999999 9999999874
No 363
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.40 E-value=0.043 Score=51.79 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.2
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
+..|.|.|++|+||||+++.+++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35688999999999999999999984
No 364
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=93.33 E-value=0.00059 Score=56.27 Aligned_cols=52 Identities=12% Similarity=-0.012 Sum_probs=44.1
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++ .+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 54 ~l~~~~g~~~~~~l~~-~~~~~ii~~s~~-------~~~~~~~~~~~~g~~~~l~Kp~~~~ 106 (120)
T 2a9o_A 54 MLPEIDGLEVAKTIRK-TSSVPILMLSAK-------DSEFDKVIGLELGADDYVTKPFSNR 106 (120)
T ss_dssp SCSSSCHHHHHHHHHH-HCCCCEEEEESC-------CSHHHHHHHHHHTCSEEEESSCCHH
T ss_pred cCCCCCHHHHHHHHHh-CCCCCEEEEecC-------CchHHHHHHHhCCHhheEeCCCCHH
Confidence 4899999999999997 466777777776 67778899999999 9999998874
No 365
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=93.33 E-value=0.0006 Score=63.17 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=44.3
Q ss_pred ccccCcchhhHHHHHHH----HHHHHHHHHHHhhhchhccC-CchHHHHHHHHHH-HHHHHHhH
Q psy2637 112 EMASTVGDTLLATQKEH----HRKAFDLISKALKIDEENTG-NKDVAIEFYKKGI-SELDKGIA 169 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~----~~~a~~ii~~a~~~~~~~~~-~~~~Av~~~k~g~-d~l~k~~~ 169 (502)
.||+++|+++++++++. .+..++|+.++. . +.+.+.++++.|+ +|+.||++
T Consensus 128 ~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~-------~~~~~~~~~~~~~Ga~~~l~KP~~ 184 (206)
T 3mm4_A 128 QMPEMDGYEATREIRKVEKSYGVRTPIIAVSGH-------DPGSEEARETIQAGMDAFLDKSLN 184 (206)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESS-------CCCHHHHHHHHHHTCSEEEETTCT
T ss_pred CCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECC-------CCcHHHHHHHHhCCCCEEEcCcHH
Confidence 48999999999999986 466888999987 5 6678889999999 89999986
No 366
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.31 E-value=0.039 Score=51.55 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||++.++...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999998754
No 367
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.31 E-value=0.05 Score=48.93 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.7
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~ 285 (502)
..+.|.|++|+|||+++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999876
No 368
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.29 E-value=0.15 Score=52.99 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=26.6
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEeecc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISAA 295 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~~s 295 (502)
..+++.||+|+|||.++-.++...+.+.+.+...
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 4599999999999999988888776665555443
No 369
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.29 E-value=0.048 Score=54.23 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=22.7
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
+.-+.|.||+|+||||+++.++..+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44678999999999999999998764
No 370
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.28 E-value=0.04 Score=53.11 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=23.1
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||||++.++...
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999999765
No 371
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.24 E-value=0.038 Score=52.55 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=23.1
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||||++.|+...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999999754
No 372
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=93.23 E-value=0.00053 Score=57.55 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=45.7
Q ss_pred ccccCcchhhHHHHHHH--HHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEH--HRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~--~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++. .+.+++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 60 ~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~-------~~~~~~~~~~~~g~~~~l~KP~~~~ 115 (129)
T 1p6q_A 60 NMPKMDGLGLLQAVRANPATKKAAFIILTAQ-------GDRALVQKAAALGANNVLAKPFTIE 115 (129)
T ss_dssp SSCSSCHHHHHHHHTTCTTSTTCEEEECCSC-------CCHHHHHHHHHHTCSCEECCCSSHH
T ss_pred CCCCCCHHHHHHHHhcCccccCCCEEEEeCC-------CCHHHHHHHHHcCCCEEEECCCCHH
Confidence 48999999999999975 467778888887 77888899999999 9999998874
No 373
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.23 E-value=0.023 Score=54.48 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=23.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
.+.-|.|.|++|+||||+++.|++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345688999999999999999999983
No 374
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=93.19 E-value=0.00065 Score=56.46 Aligned_cols=53 Identities=17% Similarity=0.090 Sum_probs=40.3
Q ss_pred ccccCcchhhHHHHHHH--HHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEH--HRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~--~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++. .+..++++.++. .+.+...++++.|+ +|+.||++.+
T Consensus 54 ~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~-------~~~~~~~~~~~~g~~~~l~KP~~~~ 109 (124)
T 1mb3_A 54 QLPEISGLEVTKWLKEDDDLAHIPVVAVTAF-------AMKGDEERIREGGCEAYISKPISVV 109 (124)
T ss_dssp BCSSSBHHHHHHHHHHSTTTTTSCEEEEC-------------CHHHHHHHTCSEEECSSCCHH
T ss_pred CCCCCCHHHHHHHHHcCccccCCcEEEEECC-------CCHHHHHHHHhCCCCEEEeCCCCHH
Confidence 48999999999999985 456788888887 66677788899999 9999998774
No 375
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.19 E-value=0.048 Score=52.12 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.2
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~ 284 (502)
++..+.|.||+|+|||||++.++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999985
No 376
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.18 E-value=0.05 Score=52.58 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=22.7
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHH
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~ 284 (502)
.++..+.|.||+|+|||||++.|+..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999975
No 377
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=93.15 E-value=0.00063 Score=56.57 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=44.1
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++. +..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 56 ~l~~~~g~~~~~~l~~~-~~~~ii~~s~~-------~~~~~~~~~~~~g~~~~l~KP~~~~ 108 (123)
T 1xhf_A 56 NLPGKNGLLLARELREQ-ANVALMFLTGR-------DNEVDKILGLEIGADDYITKPFNPR 108 (123)
T ss_dssp SCSSSCHHHHHHHHHHH-CCCEEEEEESC-------CSHHHHHHHHHHTCSEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHhC-CCCcEEEEECC-------CChHHHHHHHhcCcceEEeCCCCHH
Confidence 48999999999999986 66777777776 67778899999999 9999999874
No 378
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.14 E-value=0.05 Score=51.76 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.7
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~ 285 (502)
..+.|.||+|+|||||++.++...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 668899999999999999999765
No 379
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.13 E-value=0.037 Score=51.44 Aligned_cols=24 Identities=42% Similarity=0.546 Sum_probs=21.4
Q ss_pred CcceEEecCCCCcHHHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~ 284 (502)
+..+.|.||+|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999975
No 380
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.13 E-value=0.044 Score=52.77 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.2
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||||++.|+...
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345678999999999999999998754
No 381
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.13 E-value=0.095 Score=46.90 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
....|++.|++|+|||+++..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44679999999999999999998753
No 382
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.12 E-value=0.042 Score=52.76 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||++.++...
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999998754
No 383
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=93.12 E-value=0.00086 Score=56.62 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=44.8
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+..++++.++. .+.+...++++.|+ +|+.||++.+
T Consensus 55 ~l~~~~g~~~~~~l~~~~~~~~ii~~s~~-------~~~~~~~~~~~~g~~~~l~kp~~~~ 108 (134)
T 3f6c_A 55 DIPGVNGIQVLETLRKRQYSGIIIIVSAK-------NDHFYGKHCADAGANGFVSKKEGMN 108 (134)
T ss_dssp TCSSSCHHHHHHHHHHTTCCSEEEEEECC----------CTHHHHHHTTCSEEEEGGGCTH
T ss_pred CCCCCChHHHHHHHHhcCCCCeEEEEeCC-------CChHHHHHHHHhCCCEEEeCCCCHH
Confidence 48999999999999999998888888887 67777889999999 9999998773
No 384
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.08 E-value=0.051 Score=49.04 Aligned_cols=24 Identities=29% Similarity=0.265 Sum_probs=21.5
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~ 285 (502)
..+.|.|++|+|||++++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 568899999999999999999875
No 385
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.07 E-value=0.044 Score=52.37 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=22.8
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||++.|+...
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999998764
No 386
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.07 E-value=0.053 Score=50.51 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=26.1
Q ss_pred cceEEecCCCCcHHHHHHHHHHHccCceEEee
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACNATFFSIS 293 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~~~fv~i~ 293 (502)
-.|-|+|..|||||++++.+++ +|.+++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4588999999999999999998 887776543
No 387
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=93.07 E-value=0.00066 Score=59.12 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=46.4
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHH-H-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKG-I-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g-~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+.+++++.++. .+.+...++++.| + +|+.||++.+
T Consensus 60 ~l~~~~g~~~~~~l~~~~~~~~ii~ls~~-------~~~~~~~~~~~~g~~~~~l~kP~~~~ 114 (154)
T 2rjn_A 60 RMPEMGGEVFLEQVAKSYPDIERVVISGY-------ADAQATIDAVNRGKISRFLLKPWEDE 114 (154)
T ss_dssp SCSSSCHHHHHHHHHHHCTTSEEEEEECG-------GGHHHHHHHHHTTCCSEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCcEEEEecC-------CCHHHHHHHHhccchheeeeCCCCHH
Confidence 48999999999999998888888888887 6677889999998 7 9999998874
No 388
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.06 E-value=0.15 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=17.2
Q ss_pred cceEEecCCCCcHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVAT 283 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~ 283 (502)
..+++.+|+|+|||..+-..+.
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~ 58 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTAL 58 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 5799999999999995544433
No 389
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.03 E-value=0.044 Score=51.63 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.8
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||++.++...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999999865
No 390
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.03 E-value=0.047 Score=55.18 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..++|.||+|+||||++++++...
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 35689999999999999999999876
No 391
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.00 E-value=0.047 Score=52.92 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=23.2
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||||++.|+...
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999999754
No 392
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.99 E-value=0.045 Score=53.24 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||++.++...
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45678899999999999999999754
No 393
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.99 E-value=0.046 Score=51.94 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=22.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||++.++...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999999765
No 394
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.98 E-value=0.047 Score=52.69 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=23.1
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||||++.|+...
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 345678899999999999999999765
No 395
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=92.95 E-value=0.00059 Score=57.18 Aligned_cols=54 Identities=20% Similarity=0.116 Sum_probs=45.1
Q ss_pred cccccCcchhhHHHHHHH--HHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 111 VEMASTVGDTLLATQKEH--HRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 111 ~~~~~~~g~~~l~~~~~~--~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
..||+++|.++++++++. .+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 57 ~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~-------~~~~~~~~~~~~ga~~~l~KP~~~~ 113 (128)
T 1jbe_A 57 WNMPNMDGLELLKTIRAXXAMSALPVLMVTAE-------AKKENIIAAAQAGASGYVVKPFTAA 113 (128)
T ss_dssp SCCSSSCHHHHHHHHHC--CCTTCCEEEEESS-------CCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred CCCCCCCHHHHHHHHHhhcccCCCcEEEEecC-------ccHHHHHHHHHhCcCceeecCCCHH
Confidence 358999999999999983 456778888877 77788899999999 9999999874
No 396
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=92.91 E-value=0.00044 Score=58.23 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=40.9
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHh-Hh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGI-AV 170 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~-~~ 170 (502)
.||+++|.++++++++..+..++++.++. .+.+...++++.|+ +|+.||+ +.
T Consensus 60 ~l~~~~g~~~~~~l~~~~~~~~ii~~t~~-------~~~~~~~~~~~~g~~~~l~KP~~~~ 113 (130)
T 3eod_A 60 AMPRMNGLKLLEHIRNRGDQTPVLVISAT-------ENMADIAKALRLGVEDVLLKPVKDL 113 (130)
T ss_dssp C-----CHHHHHHHHHTTCCCCEEEEECC-------CCHHHHHHHHHHCCSEEEESCC---
T ss_pred CCCCCCHHHHHHHHHhcCCCCCEEEEEcC-------CCHHHHHHHHHcCCCEEEeCCCCcH
Confidence 48999999999999999888888888887 77888899999999 8999999 55
No 397
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.90 E-value=0.047 Score=52.78 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.7
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||++.++...
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45678899999999999999999754
No 398
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.89 E-value=0.05 Score=52.30 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.1
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||||++.++...
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999999754
No 399
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.87 E-value=0.048 Score=52.18 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.7
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||++.++...
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45678899999999999999999765
No 400
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.87 E-value=0.05 Score=52.51 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=23.0
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||||++.|+...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345678899999999999999999754
No 401
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.80 E-value=0.21 Score=51.57 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=17.6
Q ss_pred CcceEEecCCCCcHHHHH-HHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLA-RAVA 282 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lA-raia 282 (502)
+..+|+.||+|+|||..+ ..+.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 367999999999999976 4343
No 402
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.77 E-value=0.062 Score=50.11 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=22.8
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
+.-|.|.|++|+||||+++.+++.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35678899999999999999999884
No 403
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.76 E-value=0.058 Score=54.51 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=22.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||.+.|+...
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45668899999999999999999854
No 404
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.74 E-value=1.3 Score=41.79 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.1
Q ss_pred CcceEEecCCCCcHHHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~ 284 (502)
...|+|.|.||+|||+++.++...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 457999999999999999999753
No 405
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.71 E-value=0.095 Score=58.61 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=19.9
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~ 285 (502)
...+|.||||||||+++..+...+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999888776654
No 406
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.70 E-value=0.054 Score=52.46 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.9
Q ss_pred ceEEecCCCCcHHHHHHHHHHHc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~ 285 (502)
++.|.||+|+||||+.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 407
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.69 E-value=0.29 Score=57.85 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=22.4
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+-|+||+|+||||+++.+....
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 44568899999999999999998854
No 408
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.68 E-value=0.27 Score=58.15 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=22.8
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|+||+|+||||+++.+....
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccc
Confidence 44568899999999999999999866
No 409
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.68 E-value=0.078 Score=56.08 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=24.4
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccC
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNA 287 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~ 287 (502)
+..|.|.|.+|+||||+++++|+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 457889999999999999999999874
No 410
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=92.66 E-value=0.00098 Score=61.21 Aligned_cols=53 Identities=13% Similarity=0.089 Sum_probs=45.6
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVNC 172 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~~ 172 (502)
.||+++|+++++++++..+. ++++.++. .+.+.+.++++.|+ +|+.||++.+.
T Consensus 67 ~~p~~~g~~~~~~l~~~~~~-pii~lt~~-------~~~~~~~~~~~~ga~~~l~KP~~~~~ 120 (205)
T 1s8n_A 67 KMPRRDGIDAASEIASKRIA-PIVVLTAF-------SQRDLVERARDAGAMAYLVKPFSISD 120 (205)
T ss_dssp SCSSSCHHHHHHHHHHTTCS-CEEEEEEG-------GGHHHHHTTGGGSCEEEEEESCCHHH
T ss_pred CCCCCChHHHHHHHHhcCCC-CEEEEecC-------CCHHHHHHHHhcCCcEEEeCCCCHHH
Confidence 48999999999999987764 78888887 67788889999999 99999998753
No 411
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=92.65 E-value=0.00094 Score=58.55 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=48.1
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++..+..++++.++. .+.+...++++.|+ +|+.||++.+
T Consensus 92 ~l~~~~g~~~~~~lr~~~~~~~ii~ls~~-------~~~~~~~~~~~~g~~~~l~KP~~~~ 145 (157)
T 3hzh_A 92 TMPKMDGITCLSNIMEFDKNARVIMISAL-------GKEQLVKDCLIKGAKTFIVKPLDRA 145 (157)
T ss_dssp SCSSSCHHHHHHHHHHHCTTCCEEEEESC-------CCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred cCCCccHHHHHHHHHhhCCCCcEEEEecc-------CcHHHHHHHHHcCCCEEEeCCCCHH
Confidence 48999999999999999999999998887 78888999999999 8999999874
No 412
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.61 E-value=0.054 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.7
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||++.|+...
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45678899999999999999999765
No 413
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.60 E-value=0.038 Score=49.77 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.2
Q ss_pred cceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
..+.|.|++|+||||+++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999998763
No 414
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.59 E-value=0.054 Score=51.92 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||++.++...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999999754
No 415
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=92.57 E-value=0.001 Score=57.03 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=47.4
Q ss_pred ccccCcchhhHHHHHH--HHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHh-Hhh
Q psy2637 112 EMASTVGDTLLATQKE--HHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGI-AVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~--~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~-~~~ 171 (502)
.||+++|+++++++++ ..+.+++++.++. .+.+.+.++++.|+ +|+.||+ +.+
T Consensus 60 ~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~-------~~~~~~~~~~~~ga~~~l~Kp~~~~~ 116 (144)
T 3kht_A 60 GLPIANGFEVMSAVRKPGANQHTPIVILTDN-------VSDDRAKQCMAAGASSVVDKSSNNVT 116 (144)
T ss_dssp TCGGGCHHHHHHHHHSSSTTTTCCEEEEETT-------CCHHHHHHHHHTTCSEEEECCTTSHH
T ss_pred CCCCCCHHHHHHHHHhcccccCCCEEEEeCC-------CCHHHHHHHHHcCCCEEEECCCCcHH
Confidence 4899999999999998 6788899999988 78888999999999 9999998 763
No 416
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=92.52 E-value=0.0014 Score=56.84 Aligned_cols=53 Identities=8% Similarity=0.004 Sum_probs=38.5
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++..+.+++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 59 ~l~~~~g~~~~~~l~~~~~~~~ii~ls~~-------~~~~~~~~~~~~g~~~~l~kp~~~~ 112 (154)
T 2qsj_A 59 NLPDAEAIDGLVRLKRFDPSNAVALISGE-------TDHELIRAALEAGADGFIPKSADPQ 112 (154)
T ss_dssp ------CHHHHHHHHHHCTTSEEEEC------------CHHHHHHHHTTCCBBCCTTSCHH
T ss_pred CCCCCchHHHHHHHHHhCCCCeEEEEeCC-------CCHHHHHHHHHccCCEEEeCCCCHH
Confidence 47999999999999999899999999988 77888899999999 9999998773
No 417
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.52 E-value=0.11 Score=48.69 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=24.7
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccCc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNAT 288 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~~ 288 (502)
+.-|.|.|++|+||||+++.+++.++.+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4568899999999999999999999753
No 418
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.49 E-value=0.071 Score=50.58 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.0
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
+.-|.|.|++|+||||+++.+++.+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688899999999999999999873
No 419
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.46 E-value=0.081 Score=48.51 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.8
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
....|+|.|++|+|||+++..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34679999999999999999998754
No 420
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=92.45 E-value=0.00058 Score=57.87 Aligned_cols=53 Identities=9% Similarity=-0.043 Sum_probs=46.0
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+..++++.++. .+...+..+++.|+ +|+.||++.+
T Consensus 56 ~l~~~~g~~~~~~l~~~~~~~~ii~~s~~-------~~~~~~~~~~~~g~~~~l~KP~~~~ 109 (136)
T 1mvo_A 56 MLPKLDGIEVCKQLRQQKLMFPILMLTAK-------DEEFDKVLGLELGADDYMTKPFSPR 109 (136)
T ss_dssp SCSSSCHHHHHHHHHHTTCCCCEEEEECT-------TCCCCHHHHHHTTCCEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHcCCCCCCEEEEECC-------CCHHHHHHHHhCCCCEEEECCCCHH
Confidence 48999999999999998888888888877 66777888999999 9999998774
No 421
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.44 E-value=0.069 Score=48.41 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.8
Q ss_pred cceEEecCCCCcHHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~ 284 (502)
..+.|.|++|+|||+|++.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999975
No 422
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=92.42 E-value=0.0015 Score=60.64 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=47.9
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++..|..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 52 ~lp~~~g~~~~~~lr~~~~~~~ii~lt~~-------~~~~~~~~~~~~ga~~~l~Kp~~~~ 105 (220)
T 1p2f_A 52 MLPDYSGYEICRMIKETRPETWVILLTLL-------SDDESVLKGFEAGADDYVTKPFNPE 105 (220)
T ss_dssp BCSSSBHHHHHHHHHHHCTTSEEEEEESC-------CSHHHHHHHHHHTCSEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHhcCCCCcEEEEEcC-------CCHHHHHHHHHcCCCEEEECCCCHH
Confidence 48999999999999998888999999988 77888899999999 9999998874
No 423
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=92.42 E-value=0.00096 Score=57.92 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=47.6
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++..+..++++.++. .+.+...++++.|+ +|+.||++.+
T Consensus 70 ~l~~~~g~~~~~~l~~~~~~~~ii~~s~~-------~~~~~~~~~~~~g~~~~l~Kp~~~~ 123 (152)
T 3eul_A 70 RMPGMDGAQVAAAVRSYELPTRVLLISAH-------DEPAIVYQALQQGAAGFLLKDSTRT 123 (152)
T ss_dssp TCSSSCHHHHHHHHHHTTCSCEEEEEESC-------CCHHHHHHHHHTTCSEEEETTCCHH
T ss_pred CCCCCCHHHHHHHHHhcCCCCeEEEEEcc-------CCHHHHHHHHHcCCCEEEecCCCHH
Confidence 48999999999999999998888888887 77888899999999 9999998774
No 424
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.41 E-value=0.072 Score=53.84 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||.+.|+...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 45668899999999999999999754
No 425
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.41 E-value=0.071 Score=53.93 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||.+.|+...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44668899999999999999999854
No 426
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.41 E-value=0.066 Score=48.38 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.1
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~ 285 (502)
..+.|.|++|+|||+|++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358899999999999999999754
No 427
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.40 E-value=0.069 Score=53.87 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=22.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||.+.|+...
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44668899999999999999999754
No 428
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.38 E-value=0.071 Score=45.93 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.5
Q ss_pred cceEEecCCCCcHHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~ 284 (502)
..+++.|++|+|||++++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999874
No 429
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=92.37 E-value=0.00051 Score=58.72 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=44.4
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++.. .+++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 57 ~l~~~~g~~l~~~l~~~~-~~~ii~ls~~-------~~~~~~~~~~~~ga~~~l~KP~~~~ 109 (136)
T 2qzj_A 57 ILSDGDGWTLCKKIRNVT-TCPIVYMTYI-------NEDQSILNALNSGGDDYLIKPLNLE 109 (136)
T ss_dssp EETTEEHHHHHHHHHTTC-CCCEEEEESC-------CCHHHHHHHHHTTCCEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHccCC-CCCEEEEEcC-------CCHHHHHHHHHcCCcEEEECCCCHH
Confidence 489999999999999765 6677777776 67788899999999 9999999874
No 430
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=92.34 E-value=0.0017 Score=56.24 Aligned_cols=53 Identities=13% Similarity=0.106 Sum_probs=47.9
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 75 ~l~~~~g~~~~~~l~~~~~~~~ii~ls~~-------~~~~~~~~~~~~g~~~~l~Kp~~~~ 128 (150)
T 4e7p_A 75 EMPVKTGLEVLEWIRSEKLETKVVVVTTF-------KRAGYFERAVKAGVDAYVLKERSIA 128 (150)
T ss_dssp SCSSSCHHHHHHHHHHTTCSCEEEEEESC-------CCHHHHHHHHHTTCSEEEETTSCHH
T ss_pred CCCCCcHHHHHHHHHHhCCCCeEEEEeCC-------CCHHHHHHHHHCCCcEEEecCCCHH
Confidence 48999999999999999888888988887 78888999999999 9999999774
No 431
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.34 E-value=0.062 Score=50.66 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=19.8
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
+.-|.|.|++|+||||+++.+++.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999873
No 432
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.34 E-value=0.073 Score=54.17 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.6
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||.+.|+...
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45668899999999999999999854
No 433
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=92.29 E-value=0.0014 Score=67.40 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=45.1
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCc-----hHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNK-----DVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~-----~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|++++++++...+..++++.+++ +.. ..++++++.|+ +|+.||++.+
T Consensus 58 ~mP~~dG~ell~~l~~~~~~~~ii~~s~~-------~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~ 116 (400)
T 3sy8_A 58 QMSGMDGLAFLRHASLSGKVHSVILSSEV-------DPILRQATISMIECLGLNFLGDLGKPFSLE 116 (400)
T ss_dssp SCSSSCHHHHHHHHHHHTCEEEEEESCCC-------CGGGHHHHHHHHHTTTCEEEEECCSSCCHH
T ss_pred CCCCCCHHHHHHHHHhcCCCceEEEEcCc-------hHHHHHHHHHHHHHcCCeeccCcCCCcCHH
Confidence 49999999999999998887888888777 444 66788899999 9999999874
No 434
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.27 E-value=0.075 Score=53.94 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=22.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||.+.|+...
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45668899999999999999999754
No 435
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=92.25 E-value=0.0017 Score=60.45 Aligned_cols=51 Identities=12% Similarity=0.219 Sum_probs=46.6
Q ss_pred cccCcchhhHHHHHHHHH-HHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHh-Hhh
Q psy2637 113 MASTVGDTLLATQKEHHR-KAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGI-AVN 171 (502)
Q Consensus 113 ~~~~~g~~~l~~~~~~~~-~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~-~~~ 171 (502)
||+++|+++++++++. + .+++++.++. .+.+.+.++++.|+ +|+.||+ +.+
T Consensus 50 lp~~~g~~~~~~lr~~-~~~~~ii~lt~~-------~~~~~~~~~~~~Ga~~~l~Kp~~~~~ 103 (223)
T 2hqr_A 50 VSDKNALSFVSRIKEK-HSSIVVLVSSDN-------PTSEEEVHAFEQGADDYIAKPYRSIK 103 (223)
T ss_dssp ECCTTHHHHHHHHHHH-CTTSEEEEEESS-------CCHHHHHHHHHHTCSEEEETTCSCTH
T ss_pred eCCCCHHHHHHHHHhC-CCCCcEEEEECC-------CCHHHHHHHHHcCCCEEEECCCCCHH
Confidence 8999999999999998 7 8889999988 78888999999999 9999998 773
No 436
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=92.22 E-value=0.0014 Score=55.45 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=47.3
Q ss_pred ccccCcchhhHHHHHHH-HHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEH-HRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~-~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++. .+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 61 ~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~-------~~~~~~~~~~~~g~~~~l~KP~~~~ 115 (136)
T 3hdv_A 61 RMQPESGLDLIRTIRASERAALSIIVVSGD-------TDVEEAVDVMHLGVVDFLLKPVDLG 115 (136)
T ss_dssp CCSSSCHHHHHHHHHTSTTTTCEEEEEESS-------CCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred cCCCCCHHHHHHHHHhcCCCCCCEEEEeCC-------CChHHHHHHHhCCcceEEeCCCCHH
Confidence 48999999999999998 688888888887 77888999999999 9999999874
No 437
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=92.13 E-value=0.0026 Score=53.87 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=42.0
Q ss_pred ccccCcchhhHHHHHHHHHH----H-HHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRK----A-FDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~----a-~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+. . ++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 59 ~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~-------~~~~~~~~~~~~ga~~~l~KP~~~~ 117 (136)
T 1dcf_A 59 CMPGVENYQIALRIHEKFTKQRHQRPLLVALSGN-------TDKSTKEKCMSFGLDGVLLKPVSLD 117 (136)
T ss_dssp CSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESC-------CSHHHHHHHHHTTCCEEEESSCCHH
T ss_pred CCCCCcHHHHHHHHHHhhhhccCCCceEEEEeCC-------CCHHHHHHHHHcCCCeEEECCCCHH
Confidence 48999999999999975543 2 34556776 67778889999999 9999999773
No 438
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.11 E-value=0.063 Score=54.04 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=22.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||.+.|+...
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 45678899999999999999999754
No 439
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.11 E-value=0.073 Score=53.71 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=23.7
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccC
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNA 287 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~ 287 (502)
...+.|.||+|+|||||++.|+.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999998753
No 440
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.10 E-value=0.054 Score=57.96 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=23.9
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHcc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATACN 286 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~~ 286 (502)
.+..+.|.|++|+||||++++|+..++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 346788999999999999999999874
No 441
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.07 E-value=0.079 Score=53.80 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=22.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||.+.|+...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 44668899999999999999999754
No 442
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.02 E-value=0.087 Score=45.64 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=20.8
Q ss_pred cceEEecCCCCcHHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~ 284 (502)
..|++.|++|+|||++++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 443
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.99 E-value=0.093 Score=49.33 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=23.4
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHccC
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACNA 287 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~~ 287 (502)
+.-|.|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456788899999999999999998754
No 444
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.97 E-value=0.24 Score=55.03 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.0
Q ss_pred CcceEEecCCCCcHHHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~ 284 (502)
+..++|+||+|+||||+.|.++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 356889999999999999999864
No 445
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=91.95 E-value=0.00071 Score=57.80 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=48.2
Q ss_pred ccc-cCcchhhHHHHHH--HHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMA-STVGDTLLATQKE--HHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~-~~~g~~~l~~~~~--~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.|| +++|.++++++++ .++.+++++.++. .+.+...++++.|+ +|+.||++.+
T Consensus 59 ~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~-------~~~~~~~~~~~~g~~~~l~KP~~~~ 115 (140)
T 3lua_A 59 AFPVEKEGLEVLSAIRNNSRTANTPVIIATKS-------DNPGYRHAALKFKVSDYILKPYPTK 115 (140)
T ss_dssp CSSSHHHHHHHHHHHHHSGGGTTCCEEEEESC-------CCHHHHHHHHHSCCSEEEESSCCTT
T ss_pred CCCCCCcHHHHHHHHHhCcccCCCCEEEEeCC-------CCHHHHHHHHHcCCCEEEECCCCHH
Confidence 489 9999999999999 8899999999988 78888999999999 9999998874
No 446
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=91.92 E-value=0.00078 Score=55.61 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=44.0
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.+++++++. .+..++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 54 ~l~~~~g~~~~~~l~~-~~~~~ii~~s~~-------~~~~~~~~~~~~g~~~~l~Kp~~~~ 106 (121)
T 1zh2_A 54 GLPDGDGIEFIRDLRQ-WSAVPVIVLSAR-------SEESDKIAALDAGADDYLSKPFGIG 106 (121)
T ss_dssp EETTEEHHHHHHHHHT-TCCCCEEEEESC-------CSHHHHHHHHHHTCSEEEESSCCHH
T ss_pred CCCCCcHHHHHHHHHh-CCCCcEEEEECC-------CCHHHHHHHHhcCCCeEEeCCcCHH
Confidence 4899999999999994 566777777776 67778899999999 9999998874
No 447
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.90 E-value=0.13 Score=57.59 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=18.1
Q ss_pred cceEEecCCCCcHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVAT 283 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~ 283 (502)
..++|.||||||||+++..+..
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 4579999999999998766654
No 448
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=91.86 E-value=0.0026 Score=53.71 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=46.4
Q ss_pred ccccCcchhhHHHHHHHH--HHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHH--RKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~--~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++.. +..++++.++. .+.+...++++.|+ +|+.||++.+
T Consensus 64 ~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~-------~~~~~~~~~~~~g~~~~l~kP~~~~ 119 (140)
T 1k68_A 64 NLPKKDGREVLAEIKSDPTLKRIPVVVLSTS-------INEDDIFHSYDLHVNCYITKSANLS 119 (140)
T ss_dssp SCSSSCHHHHHHHHHHSTTGGGSCEEEEESC-------CCHHHHHHHHHTTCSEEEECCSSHH
T ss_pred CCCcccHHHHHHHHHcCcccccccEEEEecC-------CcHHHHHHHHHhchhheecCCCCHH
Confidence 489999999999999976 77888888887 77788899999999 9999999874
No 449
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.83 E-value=0.073 Score=51.33 Aligned_cols=25 Identities=36% Similarity=0.692 Sum_probs=22.2
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
+..+.|.||+|+|||||++.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999764
No 450
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=91.83 E-value=0.29 Score=54.70 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.1
Q ss_pred CcceEEecCCCCcHHHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~ 284 (502)
+..++|+||.|+||||+.|.++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 456889999999999999999864
No 451
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.80 E-value=0.077 Score=51.97 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.2
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||||++.|+...
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345678899999999999999999764
No 452
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.80 E-value=0.14 Score=52.12 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=26.9
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEee
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSIS 293 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~ 293 (502)
...++++.||+|+|||++++.++... +..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45789999999999999999998765 44454444
No 453
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=91.80 E-value=0.0011 Score=56.94 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=47.0
Q ss_pred ccccCcchhhHHHHHH--HHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKE--HHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~--~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++ ..+..++++.++. .+.+...++++.|+ +|+.||++.+
T Consensus 61 ~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~-------~~~~~~~~~~~~g~~~~l~kp~~~~ 116 (147)
T 2zay_A 61 NMPKISGMDLFNSLKKNPQTASIPVIALSGR-------ATAKEEAQLLDMGFIDFIAKPVNAI 116 (147)
T ss_dssp CCSSSCHHHHHHHHHTSTTTTTSCEEEEESS-------CCHHHHHHHHHHTCSEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHcCcccCCCCEEEEeCC-------CCHHHHHHHHhCCCCEEEeCCCCHH
Confidence 4899999999999998 6788888988887 77888899999999 9999999874
No 454
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.79 E-value=0.09 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.0
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~ 285 (502)
..|++.|++|+|||++++.+....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998753
No 455
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.74 E-value=0.097 Score=45.11 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.9
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~ 285 (502)
..|++.|++|+|||+++..+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998643
No 456
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.71 E-value=0.092 Score=45.99 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.0
Q ss_pred cceEEecCCCCcHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVAT 283 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~ 283 (502)
..+.|.|++|+|||+|.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999999986
No 457
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.69 E-value=0.02 Score=59.54 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCcEEEEEE-cCCCCCCcHHHHc--cccceeeecCCCHH-HHHHHH
Q psy2637 343 ASRRLKTEFLLEFDGLHSNSEHRLLVMGA-TNRPQELDEAVLR--RFSKRIYVTLPDSK-TRKSLL 404 (502)
Q Consensus 343 ~~~~~~~~ll~~l~g~~~~~~~~v~vIaa-TN~~~~l~~~l~r--Rf~~~I~i~~P~~~-er~~il 404 (502)
...++...|+..++|...... + +++ ||+++.++++++| ||++.|++++|+.. .|.+|+
T Consensus 127 ~e~rvl~~LL~~~dg~~~~~~--v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 127 AEERILDALLPPAKNQWGEVE--N--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhccccccc--c--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 345677778888887754322 2 455 9999999999998 99999999999887 677765
No 458
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.69 E-value=0.087 Score=46.05 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.0
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.-.+|+||.|+|||++..+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999998755
No 459
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=91.66 E-value=0.0011 Score=63.43 Aligned_cols=52 Identities=10% Similarity=0.088 Sum_probs=46.9
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++ .+.+++++.++. .+.+.+.++++.|+ +|+.||++.+
T Consensus 90 ~lp~~~G~~l~~~lr~-~~~~~iI~lt~~-------~~~~~~~~a~~~Ga~~yl~Kp~~~~ 142 (249)
T 3q9s_A 90 GLPDFDGGDVVQRLRK-NSALPIIVLTAR-------DTVEEKVRLLGLGADDYLIKPFHPD 142 (249)
T ss_dssp CSCHHHHHHHHHHHHT-TCCCCEEEEESC-------CSHHHHHHHHHHTCSEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHc-CCCCCEEEEECC-------CCHHHHHHHHHCCCcEEEECCCCHH
Confidence 4899999999999998 678889999988 78889999999999 9999999874
No 460
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.65 E-value=0.093 Score=53.62 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=22.6
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHH
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~ 284 (502)
.++..+.|.||+|+||||+.+.|+..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 34567899999999999999999974
No 461
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.64 E-value=0.077 Score=47.41 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.8
Q ss_pred cceEEecCCCCcHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVAT 283 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~ 283 (502)
..|+|.|++|+|||+|++.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999986
No 462
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.63 E-value=0.13 Score=45.12 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.8
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~ 284 (502)
....|++.|++|+|||++++.+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999763
No 463
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=91.58 E-value=1.3 Score=49.15 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=19.4
Q ss_pred CcceEEecCCCCcHHHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~ 284 (502)
+.++|+.||+|+|||.++-..+-.
T Consensus 389 ~~~~Ll~a~TGSGKTlvall~il~ 412 (780)
T 1gm5_A 389 PMNRLLQGDVGSGKTVVAQLAILD 412 (780)
T ss_dssp CCCCEEECCSSSSHHHHHHHHHHH
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999987665443
No 464
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=91.55 E-value=0.0016 Score=56.84 Aligned_cols=53 Identities=15% Similarity=0.031 Sum_probs=46.2
Q ss_pred ccccCcchhhHHHHHHHH--HHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHH--RKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~--~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++.. +..++++.++. .+.+...++++.|+ +|+.||++.+
T Consensus 60 ~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~-------~~~~~~~~~~~~g~~~~l~KP~~~~ 115 (154)
T 3gt7_A 60 LMPEMDGYALCRWLKGQPDLRTIPVILLTIL-------SDPRDVVRSLECGADDFITKPCKDV 115 (154)
T ss_dssp CCSSSCHHHHHHHHHHSTTTTTSCEEEEECC-------CSHHHHHHHHHHCCSEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHhCCCcCCCCEEEEECC-------CChHHHHHHHHCCCCEEEeCCCCHH
Confidence 489999999999999864 67788888887 78888899999999 9999999874
No 465
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.54 E-value=0.38 Score=47.96 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.9
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
...+.|.|+||+||||++..++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4668899999999999999998764
No 466
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.53 E-value=0.11 Score=44.90 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.8
Q ss_pred cceEEecCCCCcHHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~ 284 (502)
..|++.|++|+|||++++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999864
No 467
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.53 E-value=0.11 Score=45.08 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.0
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~ 285 (502)
-.|++.|++|+|||++++++....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998643
No 468
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.51 E-value=0.11 Score=48.45 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.3
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
+.-|.|.|++|+||||.++.+++.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3557889999999999999999987
No 469
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.49 E-value=0.14 Score=47.15 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.3
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
...++|.|++|+|||+++..++...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999875
No 470
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.49 E-value=0.065 Score=54.03 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
++..+.|.||+|+|||||.+.|+...
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45668899999999999999999754
No 471
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.49 E-value=0.14 Score=51.15 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=26.5
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc---cCceEEee
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC---NATFFSIS 293 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~i~ 293 (502)
++.-++|.|+||+|||++|..+|... +.++..++
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45678999999999999999998875 45554443
No 472
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=91.49 E-value=0.0011 Score=56.77 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=46.7
Q ss_pred ccccCcchhhHHHHHH----HHHHHHHHHHHHhhhchhccCCchHHHHHHHHH-H-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKE----HHRKAFDLISKALKIDEENTGNKDVAIEFYKKG-I-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~----~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g-~-d~l~k~~~~~ 171 (502)
.||+++|+++++++++ ..+..++++.++. .+.+...++++.| + +|+.||++.+
T Consensus 69 ~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~-------~~~~~~~~~~~~g~~~~~l~KP~~~~ 127 (146)
T 3ilh_A 69 NMPGINGWELIDLFKQHFQPMKNKSIVCLLSSS-------LDPRDQAKAEASDWVDYYVSKPLTAN 127 (146)
T ss_dssp SCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSS-------CCHHHHHHHHHCSSCCEEECSSCCHH
T ss_pred CCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCC-------CChHHHHHHHhcCCcceeeeCCCCHH
Confidence 4899999999999999 5688888888887 7788889999999 8 8999999884
No 473
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.44 E-value=0.11 Score=51.26 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.7
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~ 284 (502)
.+.+++|.|++|+|||++|.++...
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999885
No 474
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.43 E-value=0.071 Score=52.65 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=23.5
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||||++.|+...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 456778999999999999999999754
No 475
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.40 E-value=0.11 Score=45.05 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.3
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~ 285 (502)
-.|++.|++|+|||++++.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 476
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=91.39 E-value=0.75 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.5
Q ss_pred CcceEEecCCCCcHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVA 282 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia 282 (502)
+..++|+||.|+||||+.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3568899999999999999994
No 477
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=91.37 E-value=0.0027 Score=56.13 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=43.0
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCC--chHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGN--KDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~--~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+ .++++.++. .+ .+.+.++++.|+ +|+.||++.+
T Consensus 80 ~l~~~~g~~l~~~lr~~~~-~~ii~~s~~-------~~~~~~~~~~~~~~ga~~~l~KP~~~~ 134 (164)
T 3t8y_A 80 EMPNLNGIEALKLIMKKAP-TRVIMVSSL-------TEEGAAITIEALRNGAVDFITKPHGSI 134 (164)
T ss_dssp SCSSSCHHHHHHHHHHHSC-CEEEEEESS-------CCTTCHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCCCCHHHHHHHHHhcCC-ceEEEEecC-------CccchHHHHHHHHcCcCEEEeCCCCHH
Confidence 4899999999999999888 777777765 33 346779999999 9999999864
No 478
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.35 E-value=0.1 Score=45.51 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=20.3
Q ss_pred cceEEecCCCCcHHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~ 284 (502)
..|++.|++|+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999998753
No 479
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.35 E-value=0.1 Score=46.28 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.3
Q ss_pred CcceEEecCCCCcHHHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~ 284 (502)
...|.|.|++|+|||+|.+.+...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999864
No 480
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.34 E-value=0.16 Score=47.39 Aligned_cols=31 Identities=10% Similarity=-0.069 Sum_probs=23.1
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc---cCceEEe
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC---NATFFSI 292 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~---~~~fv~i 292 (502)
.-.+++||.|+|||+.+-.++... +..++.+
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 445689999999999888888766 4444444
No 481
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.32 E-value=0.09 Score=54.50 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=19.4
Q ss_pred CcceEEecCCCCcHHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVAT 283 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~ 283 (502)
.+-.++.|+||+|||+++..++.
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Confidence 35568999999999999988775
No 482
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.30 E-value=0.22 Score=49.24 Aligned_cols=24 Identities=38% Similarity=0.360 Sum_probs=21.0
Q ss_pred cceEEecCCCCcHHHHHHHHHHHc
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~~ 285 (502)
..++|+|+.|+||||+++.+....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 457899999999999999999764
No 483
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.28 E-value=0.11 Score=45.44 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.7
Q ss_pred cceEEecCCCCcHHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~ 284 (502)
..|++.|++|+|||++++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 484
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.28 E-value=0.11 Score=45.07 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.5
Q ss_pred cceEEecCCCCcHHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~ 284 (502)
..|++.|++|+|||+++..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 485
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=91.27 E-value=0.0006 Score=57.14 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=43.7
Q ss_pred ccccCcchhhHHHHHHH--HHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEH--HRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~--~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++. .+..++++.++. .+.+. .++++.|+ +|+.||++.+
T Consensus 56 ~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~-------~~~~~-~~~~~~g~~~~l~KP~~~~ 110 (127)
T 3i42_A 56 NLPDTSGLALVKQLRALPMEKTSKFVAVSGF-------AKNDL-GKEACELFDFYLEKPIDIA 110 (127)
T ss_dssp BCSSSBHHHHHHHHHHSCCSSCCEEEEEECC--------CTTC-CHHHHHHCSEEEESSCCHH
T ss_pred CCCCCCHHHHHHHHHhhhccCCCCEEEEECC-------cchhH-HHHHHHhhHHheeCCCCHH
Confidence 48999999999999998 788888888887 45555 77888999 8999999884
No 486
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.27 E-value=0.12 Score=44.99 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.8
Q ss_pred cceEEecCCCCcHHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~ 284 (502)
..|++.|++|+|||++++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999865
No 487
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.21 E-value=0.12 Score=45.45 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.6
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
...|++.|++|+|||++++.+....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3579999999999999999998643
No 488
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.14 E-value=0.11 Score=54.22 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.+..+.|.||+|+|||||+|.|+...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 35679999999999999999999854
No 489
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.07 E-value=0.071 Score=49.99 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.8
Q ss_pred CCcceEEecCCCCcHHHHHHHHHHH
Q psy2637 260 PSRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 260 ~~~~vLL~GppGtGKT~lAraia~~ 284 (502)
++..+.|.|+.|+||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3456789999999999999999987
No 490
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.06 E-value=0.13 Score=44.51 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.6
Q ss_pred cceEEecCCCCcHHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~ 284 (502)
..|++.|++|+|||++++.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 491
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=91.04 E-value=0.002 Score=55.90 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=46.7
Q ss_pred ccccCcchhhHHHHHHHHHHHHHHHHHHhhhchhccCCchHHHHHHHHHH-HHHHHHhHhh
Q psy2637 112 EMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGI-SELDKGIAVN 171 (502)
Q Consensus 112 ~~~~~~g~~~l~~~~~~~~~a~~ii~~a~~~~~~~~~~~~~Av~~~k~g~-d~l~k~~~~~ 171 (502)
.||+++|.++++++++..+..++++.++. .+.+...++++.|+ +|+.||++.+
T Consensus 60 ~l~~~~g~~~~~~l~~~~~~~~ii~ls~~-------~~~~~~~~~~~~g~~~~l~kp~~~~ 113 (153)
T 3cz5_A 60 TLPGPGGIEATRHIRQWDGAARILIFTMH-------QGSAFALKAFEAGASGYVTKSSDPA 113 (153)
T ss_dssp CCSSSCHHHHHHHHHHHCTTCCEEEEESC-------CSHHHHHHHHHTTCSEEEETTSCTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEEECC-------CCHHHHHHHHHCCCcEEEecCCCHH
Confidence 48999999999999999888888888877 67788899999999 8999998774
No 492
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.04 E-value=0.13 Score=44.33 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.2
Q ss_pred ceEEecCCCCcHHHHHHHHHHHc
Q psy2637 263 GLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~~~ 285 (502)
.|++.|++|+|||+++..+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999997643
No 493
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.03 E-value=0.13 Score=44.56 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.6
Q ss_pred cceEEecCCCCcHHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~ 284 (502)
..|++.|++|+|||+++.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 494
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.00 E-value=0.12 Score=44.89 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=18.9
Q ss_pred ceEEecCCCCcHHHHHHHHHH
Q psy2637 263 GLLLFGPPGNGKTMLARAVAT 283 (502)
Q Consensus 263 ~vLL~GppGtGKT~lAraia~ 283 (502)
.|++.|++|+|||+|++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999863
No 495
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=90.98 E-value=0.15 Score=54.46 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=27.5
Q ss_pred CcceEEecCCCCcHHHHHHHHHHHcc---CceEEeecc
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATACN---ATFFSISAA 295 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~~~---~~fv~i~~s 295 (502)
+..|+|+|++|+||||+|+.+++.++ .++..++..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 45688999999999999999999874 355555543
No 496
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.97 E-value=0.13 Score=52.09 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.0
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHc
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATAC 285 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~ 285 (502)
.++..+.|.||+|+|||||++.|+...
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 345678899999999999999999754
No 497
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.95 E-value=0.14 Score=44.47 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.2
Q ss_pred CcceEEecCCCCcHHHHHHHHHHH
Q psy2637 261 SRGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 261 ~~~vLL~GppGtGKT~lAraia~~ 284 (502)
...|++.|++|+|||+|+..+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999763
No 498
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.94 E-value=0.12 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.5
Q ss_pred cceEEecCCCCcHHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVATA 284 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~~ 284 (502)
..|++.|++|+|||++++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 499
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.93 E-value=0.089 Score=51.98 Aligned_cols=31 Identities=32% Similarity=0.392 Sum_probs=24.7
Q ss_pred CCCcceEEecCCCCcHHHHHHHHHHHccCceE
Q psy2637 259 TPSRGLLLFGPPGNGKTMLARAVATACNATFF 290 (502)
Q Consensus 259 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv 290 (502)
..+.++||.|++|+|||++|..+.+. +..++
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~~-G~~lv 175 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLINK-NHLFV 175 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHTT-TCEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCEEE
Confidence 45688999999999999999988764 44444
No 500
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.93 E-value=0.11 Score=45.01 Aligned_cols=22 Identities=45% Similarity=0.730 Sum_probs=19.4
Q ss_pred cceEEecCCCCcHHHHHHHHHH
Q psy2637 262 RGLLLFGPPGNGKTMLARAVAT 283 (502)
Q Consensus 262 ~~vLL~GppGtGKT~lAraia~ 283 (502)
-.|++.|++|+|||+|++.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3589999999999999999863
Done!