RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2637
(502 letters)
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 471 bits (1214), Expect = e-166
Identities = 208/295 (70%), Positives = 251/295 (85%), Gaps = 1/295 (0%)
Query: 209 KLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFG 268
KL Q++LDEI+EGG+ V+W DIAGQ+VAKQAL EMVILPS+RPELFTGLR P++GLLLFG
Sbjct: 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFG 61
Query: 269 PPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDE 328
PPGNGKT+LARAVAT C+ATF +ISAASLTSKYVG GEKLVRALFA+AR +QPSIIFIDE
Sbjct: 62 PPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDE 121
Query: 329 VDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSE-HRLLVMGATNRPQELDEAVLRRFS 387
VDS+LSER EHEASRRLKTEFL+EFDGL N + R++V+ ATNRPQELDEA LRRF+
Sbjct: 122 VDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFT 181
Query: 388 KRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPI 447
KR+YV+LPD +TR+ LL +LL K G+PL L +AK+T+GYSGSDLT LAKDAAL PI
Sbjct: 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 241
Query: 448 RELNADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNRDYGDVSL 502
RELN +QV +D+ ++R I+ +DF SLKRIRRSV+P SL YE W++DYGD+++
Sbjct: 242 RELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDITI 296
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 473 bits (1218), Expect = e-165
Identities = 208/308 (67%), Positives = 258/308 (83%)
Query: 195 KMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELF 254
+ K+ + +VDS LA ++++EI++ G+ V++ DIAGQ++AKQAL E+VILPSLRPELF
Sbjct: 82 RKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELF 141
Query: 255 TGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFA 314
TGLR P+RGLLLFGPPGNGKTMLA+AVA NATFF+ISAASLTSKYVG+GEKLVRALFA
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFA 201
Query: 315 MARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR 374
+ARELQPSIIFID+VDS+L ER+EGEH+ASRRLKTEFL+EFDG+ S + R+LVMGATNR
Sbjct: 202 VARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261
Query: 375 PQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSD 434
PQELDEAVLRRF KR+YV+LP+ +TR LL+ LL K G+PL+Q EL +A++T+GYSGSD
Sbjct: 262 PQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSD 321
Query: 435 LTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWN 494
LT LAKDAALGPIREL +QV + +RNI DF ESLK+I+RSVSP +L Y WN
Sbjct: 322 LTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWN 381
Query: 495 RDYGDVSL 502
+D+GD ++
Sbjct: 382 KDFGDTTV 389
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 468 bits (1207), Expect = e-164
Identities = 153/324 (47%), Positives = 228/324 (70%), Gaps = 2/324 (0%)
Query: 175 GSGEKWERAQRLQEKMKNNLKMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQE 234
G + + ERL +++ K+ +++++EI++ G PV W+DIAG E
Sbjct: 33 GEQNGGMQCKPYGAGPTEPAHPVDERLK--NLEPKMIELIMNEIMDHGPPVNWEDIAGVE 90
Query: 235 VAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISA 294
AK + E+V+ P LRP++FTGLR P +G+LLFGPPG GKT++ + +A+ ATFFSISA
Sbjct: 91 FAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISA 150
Query: 295 ASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLE 354
+SLTSK+VG+GEK+VRALFA+AR QP++IFIDE+DS+LS+R +GEHE+SRR+KTEFL++
Sbjct: 151 SSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQ 210
Query: 355 FDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNP 414
DG ++SE R+LV+GATNRPQE+DEA RR KR+Y+ LP++ RK ++ L++K
Sbjct: 211 LDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC 270
Query: 415 LSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLES 474
LS+ E++ + + ++ +SG+D+T L ++A+LGPIR L + + VR I+Y DF +
Sbjct: 271 LSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENA 330
Query: 475 LKRIRRSVSPSSLIQYEAWNRDYG 498
+ +R SVSP L YE WN+ +G
Sbjct: 331 FRTVRPSVSPKDLELYENWNKTFG 354
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 432 bits (1112), Expect = e-150
Identities = 132/315 (41%), Positives = 195/315 (61%), Gaps = 32/315 (10%)
Query: 215 LDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGK 274
IL V+W+D+AG E AK+AL E VILP P LF G R P+ G+LL+GPPG GK
Sbjct: 5 FTAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGK 64
Query: 275 TMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLS 334
+ LA+AVAT N+TFFS+S++ L SK++G+ EKLV+ LFAMARE +PSIIFID+VD++
Sbjct: 65 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG 124
Query: 335 ERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTL 394
R EGE EASRR+KTE L++ +G+ ++S+ +LV+GATN P +LD A+ RRF +RIY+ L
Sbjct: 125 TRGEGESEASRRIKTELLVQMNGVGNDSQ-GVLVLGATNIPWQLDSAIRRRFERRIYIPL 183
Query: 395 PDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIREL---- 450
PD R ++ E + L++ + + +TEGYSGSD+ + KDA + PIR++
Sbjct: 184 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 243
Query: 451 ---------------------------NADQVIKVDLKSVRNISYRDFLESLKRIRRSVS 483
+ I+ D +++ +DFL+++K R +V+
Sbjct: 244 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303
Query: 484 PSSLIQYEAWNRDYG 498
L++ E + RD+G
Sbjct: 304 EDDLLKQEQFTRDFG 318
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 423 bits (1089), Expect = e-147
Identities = 127/319 (39%), Positives = 187/319 (58%), Gaps = 39/319 (12%)
Query: 218 ILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTML 277
I+ V+W D+AG E AK+AL E VILP P LFTG RTP RG+LLFGPPG GK+ L
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61
Query: 278 ARAVATACN-ATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSER 336
A+AVAT N +TFFSIS++ L SK++G+ EKLV+ LF +ARE +PSIIFIDE+DS+ R
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121
Query: 337 KEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPD 396
E E EA+RR+KTEFL++ G+ +++ +LV+GATN P LD A+ RRF KRIY+ LP+
Sbjct: 122 SENESEAARRIKTEFLVQMQGVGVDND-GILVLGATNIPWVLDSAIRRRFEKRIYIPLPE 180
Query: 397 SKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNAD--- 453
R ++ + L N L++ + + + T+GYSG+D++ + +DA + P+R++ +
Sbjct: 181 PHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHF 240
Query: 454 ----------------------------------QVIKVDLKSVRNISYRDFLESLKRIR 479
+ D +S D L SL +
Sbjct: 241 KKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTK 300
Query: 480 RSVSPSSLIQYEAWNRDYG 498
+V+ L++ + + D+G
Sbjct: 301 PTVNEHDLLKLKKFTEDFG 319
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 423 bits (1088), Expect = e-145
Identities = 149/444 (33%), Positives = 224/444 (50%), Gaps = 70/444 (15%)
Query: 122 LATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNC--------- 172
+A+ + +KA DL SKA E+ GN + A++ Y+ + +
Sbjct: 1 MASTNTNLQKAIDLASKA--AQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSI 58
Query: 173 ------YYGSGEKWERAQRLQEKMKNN--------------LKMAKERLSILSVDSKLAQ 212
Y EK + + +EK E S KL
Sbjct: 59 RAKCTEYLDRAEKLKEYLKKKEKKPQKPVKEEQSGPVDEKGNDSDGEAESDDPEKKKLQN 118
Query: 213 VVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGN 272
+ I+ V+W D+AG E AK+AL E VILP P LFTG RTP RG+LLFGPPG
Sbjct: 119 QLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGT 178
Query: 273 GKTMLARAVATACN-ATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDS 331
GK+ LA+AVAT N +TFFSIS++ L SK++G+ EKLV+ LF +ARE +PSIIFIDE+DS
Sbjct: 179 GKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDS 238
Query: 332 VLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIY 391
+ R E E EA+RR+KTEFL++ G+ +++ +LV+GATN P LD A+ RRF KRIY
Sbjct: 239 LCGSRSENESEAARRIKTEFLVQMQGVGVDND-GILVLGATNIPWVLDSAIRRRFEKRIY 297
Query: 392 VTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELN 451
+ LP++ R ++ L N L++ + + + T+GYSG+D++ + +DA + P+R++
Sbjct: 298 IPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQ 357
Query: 452 AD-------------------------------------QVIKVDLKSVRNISYRDFLES 474
+ + D +S D L S
Sbjct: 358 SATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRS 417
Query: 475 LKRIRRSVSPSSLIQYEAWNRDYG 498
L + +V+ L++ + + D+G
Sbjct: 418 LSSTKPTVNEQDLLKLKKFTEDFG 441
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 417 bits (1074), Expect = e-144
Identities = 134/332 (40%), Positives = 202/332 (60%), Gaps = 32/332 (9%)
Query: 198 KERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGL 257
+ + + KL + IL V+W+D+AG E AK+AL E VILP P LF G
Sbjct: 21 EGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN 80
Query: 258 RTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMAR 317
R P+ G+LL+GPPG GK+ LA+AVAT N+TFFS+S++ L SK++G+ EKLV+ LFAMAR
Sbjct: 81 RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR 140
Query: 318 ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQE 377
E +PSIIFID+VD++ R EGE EASRR+KTE L++ +G+ ++S+ +LV+GATN P +
Sbjct: 141 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ-GVLVLGATNIPWQ 199
Query: 378 LDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTN 437
LD A+ RRF +RIY+ LPD R ++ E + + L++ + + +TEGYSGSD+
Sbjct: 200 LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV 259
Query: 438 LAKDAALGPIREL-------------------------------NADQVIKVDLKSVRNI 466
+ KDA + PIR++ + I+ D ++
Sbjct: 260 VVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDL 319
Query: 467 SYRDFLESLKRIRRSVSPSSLIQYEAWNRDYG 498
+ +DFL+++K R +V+ L++ E + RD+G
Sbjct: 320 TIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 351
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 271 bits (694), Expect = 6e-88
Identities = 102/292 (34%), Positives = 160/292 (54%), Gaps = 26/292 (8%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFT--GLRTPSRGLLLFGPPGNGKTMLARAVA 282
V W+DI G E K+ L E+V P P+ F G+ PS+G+L +GPPG GKT+LA+A+A
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 70
Query: 283 TACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHE 342
C A F SI L + + G+ E VR +F AR+ P ++F DE+DS+ R +
Sbjct: 71 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 130
Query: 343 ASR---RLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDS 397
R+ + L E DG+ + + ++GATNRP +D A+LR R + IY+ LPD
Sbjct: 131 GGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188
Query: 398 KTRKSLLEKLLNKHGNPLSQ-LELDAVAKLTEGYSGSDLTNLAKDAALGPIRE------- 449
K+R ++L+ L K P+++ ++L+ +AK+T G+SG+DLT + + A IRE
Sbjct: 189 KSRVAILKANLRKS--PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 246
Query: 450 ------LNADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNR 495
N + + V I F E+++ RRSVS + + +YE + +
Sbjct: 247 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 298
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 280 bits (718), Expect = 6e-86
Identities = 104/303 (34%), Positives = 162/303 (53%), Gaps = 24/303 (7%)
Query: 215 LDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGL-RTPSRGLLLFGPPGNG 273
L E + V W+DI G E K+ L E+V P P+ F TPS+G+L +GPPG G
Sbjct: 464 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCG 523
Query: 274 KTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVL 333
KT+LA+A+A C A F SI L + + G+ E VR +F AR+ P ++F DE+DS+
Sbjct: 524 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIA 583
Query: 334 SERKEGEHEAS---RRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSK 388
R + R+ + L E DG+ + + ++GATNRP +D A+LR R +
Sbjct: 584 KARGGNIGDGGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQ 641
Query: 389 RIYVTLPDSKTRKSLLEKLLNKHGNPLSQ-LELDAVAKLTEGYSGSDLTNLAKDAALGPI 447
IY+ LPD K+R ++L+ L K P+++ ++L+ +AK+T G+SG+DLT + + A I
Sbjct: 642 LIYIPLPDEKSRVAILKANLRKS--PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAI 699
Query: 448 RE-------------LNADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWN 494
RE N + + V I F E+++ RRSVS + + +YE +
Sbjct: 700 RESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFA 759
Query: 495 RDY 497
+
Sbjct: 760 QTL 762
Score = 242 bits (618), Expect = 1e-71
Identities = 93/282 (32%), Positives = 150/282 (53%), Gaps = 13/282 (4%)
Query: 217 EILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGL-RTPSRGLLLFGPPGNGKT 275
+ E + V + D+ G + EMV LP P LF + P RG+LL+GPPG GKT
Sbjct: 193 DEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
Query: 276 MLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSE 335
++ARAVA A FF I+ + SK G+ E +R F A + P+IIFIDE+D++ +
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 336 RKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVT 393
R++ E RR+ ++ L DGL + ++VM ATNRP +D A+ R RF + + +
Sbjct: 313 REKTHGEVERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIG 370
Query: 394 LPDSKTRKSLLEKLLNKHGNPLSQ-LELDAVAKLTEGYSGSDLTNLAKDAALGPIREL-- 450
+PD+ R +L+ L+ ++L+ VA T G+ G+DL L +AAL IR+
Sbjct: 371 IPDATGRLEILQIHTKNM--KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Query: 451 ---NADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQ 489
D+ I ++ + ++ DF +L + S ++++
Sbjct: 429 LIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVE 470
Score = 30.5 bits (69), Expect = 1.6
Identities = 11/51 (21%), Positives = 14/51 (27%), Gaps = 1/51 (1%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGK 274
V DI E+ Q L + S R PS+G
Sbjct: 747 VSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAGPSQGSGGGTGGSVYT 797
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 260 bits (667), Expect = 3e-84
Identities = 92/268 (34%), Positives = 146/268 (54%), Gaps = 12/268 (4%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFT--GLRTPSRGLLLFGPPGNGKTMLARAVA 282
V W DI E ++ L ++ P P+ F GL G+LL GPPG GKT+LA+AVA
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLV-TPAGVLLAGPPGCGKTLLAKAVA 65
Query: 283 TACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHE 342
F S+ L + YVG+ E+ VR +F A+ P +IF DEVD++ R + E
Sbjct: 66 NESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETG 125
Query: 343 ASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTR 400
AS R+ + L E DGL + + + +M ATNRP +D A+LR R K ++V LP R
Sbjct: 126 ASVRVVNQLLTEMDGLEARQQ--VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183
Query: 401 KSLLEKLL-NKHGNPLSQ-LELDAVAK--LTEGYSGSDLTNLAKDAALGPIRELNADQVI 456
++L+ + N PL + L+A+A + Y+G+DL+ L ++A++ +R+ +
Sbjct: 184 LAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQ-EMARQK 242
Query: 457 KVDLKSVRNISYRDFLESLKRIRRSVSP 484
+ K +S++ F E+ K++R S+S
Sbjct: 243 SGNEKGELKVSHKHFEEAFKKVRSSISK 270
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 249 bits (637), Expect = 4e-77
Identities = 96/284 (33%), Positives = 151/284 (53%), Gaps = 17/284 (5%)
Query: 213 VVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPG 271
+ ++ E + V + DI G + EMV LP P LF + P RG+LL+GPPG
Sbjct: 189 IKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPG 248
Query: 272 NGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDS 331
GKT++ARAVA A FF I+ + SK G+ E +R F A + P+IIFIDE+D+
Sbjct: 249 TGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDA 308
Query: 332 VLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKR 389
+ +R++ E RR+ ++ L DGL + ++VM ATNRP +D A+ R RF +
Sbjct: 309 IAPKREKTHGEVERRIVSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 390 IYVTLPDSKTRKSLLEKLLNKHGNPLSQ-LELDAVAKLTEGYSGSDLTNLAKDAALGPIR 448
+ + +PD+ R +L+ L+ ++L+ VA T G+ G+DL L +AAL IR
Sbjct: 367 VDIGIPDATGRLEILQIHTKNM--KLADDVDLEQVANETHGHVGADLAALCSEAALQAIR 424
Query: 449 EL-----NADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSL 487
+ D+ I ++ + ++ DF +L + PS+L
Sbjct: 425 KKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSN----PSAL 464
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 225 bits (576), Expect = 1e-70
Identities = 99/260 (38%), Positives = 150/260 (57%), Gaps = 17/260 (6%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLR-TPSRGLLLFGPPGNGKTMLARAVAT 283
V+++DI G E Q + E+V LP PELF + P +G+LL+GPPG GKT+LA+AVAT
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA 343
NATF + + L K++G+G LV+ +F +A+E PSIIFIDE+D++ ++R +
Sbjct: 74 ETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGG 133
Query: 344 SR---RLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSK 398
R R + L E DG + + ++GATNRP LD A+LR RF + I V PD K
Sbjct: 134 DREVQRTLMQLLAEMDGFDARG--DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEK 191
Query: 399 TRKSLLE---KLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQV 455
R +L+ + +N + + L+ +AK+TEG G++L + +A + IRE D V
Sbjct: 192 GRLEILKIHTRKMNLAED----VNLEEIAKMTEGCVGAELKAICTEAGMNAIRE-LRDYV 246
Query: 456 IKVD-LKSVRNISYRDFLES 474
D K+V I + ++
Sbjct: 247 TMDDFRKAVEKIMEKKKVKV 266
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 174 bits (444), Expect = 2e-51
Identities = 95/270 (35%), Positives = 145/270 (53%), Gaps = 32/270 (11%)
Query: 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLR-PELFT--GLRTPSRGLLLFGPPGNGKTM 276
E + D+AG + AK+ + E+V LR P F G + P +G+L+ GPPG GKT+
Sbjct: 4 EDQIKTTFADVAGCDEAKEEVAELVEY--LREPSRFQKLGGKIP-KGVLMVGPPGTGKTL 60
Query: 277 LARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSER 336
LA+A+A FF+IS + +VG G VR +F A++ P IIFIDE+D+V +R
Sbjct: 61 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120
Query: 337 KE---GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIY 391
G H+ + + L+E DG N ++V+ ATNRP LD A+LR RF +++
Sbjct: 121 GAGLGGGHDEREQTLNQMLVEMDGFEGNEG--IIVIAATNRPDVLDPALLRPGRFDRQVV 178
Query: 392 VTLPDSKTRKSLLEKLLNKH--GNPLSQ-LELDAVAKLTEGYSGSDLTNLAKDAALGPIR 448
V LPD + R E++L H PL+ ++ +A+ T G+SG+DL NL +AAL R
Sbjct: 179 VGLPDVRGR----EQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 234
Query: 449 ELNADQVIKVDLKSVRNISYRDFLESLKRI 478
+ R +S +F ++ +I
Sbjct: 235 ------------GNKRVVSMVEFEKAKDKI 252
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 174 bits (444), Expect = 4e-51
Identities = 41/280 (14%), Positives = 95/280 (33%), Gaps = 26/280 (9%)
Query: 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNAT 288
+ G +A + ++V+ + ++ P L ++G G GK+ V
Sbjct: 5 KLDGFYIAPAFMDKLVVHITKNFLKLPNIKVP-LILGIWGGKGQGKSFQCELVFRKMGIN 63
Query: 289 FFSISAASLTSKYVGQGEKLVRALFAMA----RELQPSIIFIDEVDSVLSERKEGEHEAS 344
+SA L S G+ KL+R + A R+ +FI+++D+
Sbjct: 64 PIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTV 123
Query: 345 R-----RLKTEFL-----LEFDGLHSNSE-HRLLVMGATNRPQELDEAVLR--RFSKRIY 391
++ G+++ E R+ ++ N L ++R R K +
Sbjct: 124 NNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW 183
Query: 392 VTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELN 451
+ + + + + N + + V K+ + + G + A E+
Sbjct: 184 APTREDRIG---VCTGIFRTDN----VPAEDVVKIVDNFPGQSIDFFGALRARVYDDEV- 235
Query: 452 ADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYE 491
V ++ + + F + ++ L++Y
Sbjct: 236 RKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYG 275
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 173 bits (440), Expect = 6e-51
Identities = 99/254 (38%), Positives = 141/254 (55%), Gaps = 21/254 (8%)
Query: 218 ILEGGSPVQWQDIAGQEVAKQALHEMVILPSLR-PELFT--GLRTPSRGLLLFGPPGNGK 274
+L V ++D+AG E AK+ L E+V L+ P F G R P +G+LL GPPG GK
Sbjct: 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF--LKNPSRFHEMGARIP-KGVLLVGPPGVGK 62
Query: 275 TMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLS 334
T LARAVA F + S + +VG G VR LF A+ P I+FIDE+D+V
Sbjct: 63 THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 122
Query: 335 ERKE---GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKR 389
+R G ++ + + L+E DG ++ ++VM ATNRP LD A+LR RF ++
Sbjct: 123 KRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQ 180
Query: 390 IYVTLPDSKTRKSLLEKLLNKH--GNPLSQ-LELDAVAKLTEGYSGSDLTNLAKDAALGP 446
I + PD K R E++L H G PL++ ++L +AK T G+ G+DL NL +AAL
Sbjct: 181 IAIDAPDVKGR----EQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLA 236
Query: 447 IRELNADQVIKVDL 460
RE ++ DL
Sbjct: 237 ARE-GRRKITMKDL 249
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 173 bits (440), Expect = 8e-51
Identities = 93/279 (33%), Positives = 147/279 (52%), Gaps = 37/279 (13%)
Query: 220 EGGSPVQWQDIAGQEVAKQALHEMVILPSLR-PELFT--GLRTPSRGLLLFGPPGNGKTM 276
V+++D+AG E AK+ + E+V L+ PE + G + P +G+LL GPPG GKT+
Sbjct: 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF--LKYPERYANLGAKIP-KGVLLVGPPGTGKTL 59
Query: 277 LARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSER 336
LA+AVA + FFS+ +S +VG G VR LF A++ PSIIFIDE+D++ R
Sbjct: 60 LAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSR 119
Query: 337 KE----GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRI 390
++ + + L E DG S + ++V+ ATNRP+ LD A++R RF +++
Sbjct: 120 AAGGVVSGNDEREQTLNQLLAEMDGFGSENAP-VIVLAATNRPEILDPALMRPGRFDRQV 178
Query: 391 YVTLPDSKTRKSLLEKLLNKH--GNPLSQ-LELDAVAKLTEGYSGSDLTNLAKDAALGPI 447
V PD R ++L H G L+ + L VAKLT G +G+DL N+ +AAL
Sbjct: 179 LVDKPDFNGR----VEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAG 234
Query: 448 RELNADQVIKVDLKSVRNISYRDFLESLKRI-----RRS 481
R + + + + E+++R ++
Sbjct: 235 R------------NNQKEVRQQHLKEAVERGIAGLEKKL 261
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 172 bits (437), Expect = 3e-50
Identities = 99/254 (38%), Positives = 141/254 (55%), Gaps = 21/254 (8%)
Query: 218 ILEGGSPVQWQDIAGQEVAKQALHEMVILPSLR-PELFT--GLRTPSRGLLLFGPPGNGK 274
+L V ++D+AG E AK+ L E+V L+ P F G R P +G+LL GPPG GK
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF--LKNPSRFHEMGARIP-KGVLLVGPPGVGK 86
Query: 275 TMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLS 334
T LARAVA F + S + +VG G VR LF A+ P I+FIDE+D+V
Sbjct: 87 THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 146
Query: 335 ERKE---GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKR 389
+R G ++ + + L+E DG ++ ++VM ATNRP LD A+LR RF ++
Sbjct: 147 KRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQ 204
Query: 390 IYVTLPDSKTRKSLLEKLLNKH--GNPLSQ-LELDAVAKLTEGYSGSDLTNLAKDAALGP 446
I + PD K R E++L H G PL++ ++L +AK T G+ G+DL NL +AAL
Sbjct: 205 IAIDAPDVKGR----EQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLA 260
Query: 447 IRELNADQVIKVDL 460
RE ++ DL
Sbjct: 261 ARE-GRRKITMKDL 273
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 171 bits (435), Expect = 5e-50
Identities = 84/266 (31%), Positives = 137/266 (51%), Gaps = 31/266 (11%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLR-PELFT--GLRTPSRGLLLFGPPGNGKTMLARAV 281
V ++D+AG AK + E V L+ PE F G + P +G LL GPPG GKT+LA+AV
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY--LKSPERFLQLGAKVP-KGALLLGPPGCGKTLLAKAV 59
Query: 282 ATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEH 341
AT F +++ A G G VR+LF AR P I++IDE+D+V +R
Sbjct: 60 ATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMS 119
Query: 342 EAS--RRLKT--EFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLP 395
S +T + L+E DG+ + ++V+ +TNR LD A++R R + +++ LP
Sbjct: 120 GFSNTEEEQTLNQLLVEMDGMGTTDH--VIVLASTNRADILDGALMRPGRLDRHVFIDLP 177
Query: 396 DSKTRKSLLEKLLNKHGNPLSQ---LELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNA 452
+ R+ + E+ L L+Q +A+LT G+SG+D+ N+ +AAL R
Sbjct: 178 TLQERREIFEQHLKS--LKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAR---- 231
Query: 453 DQVIKVDLKSVRNISYRDFLESLKRI 478
+ ++ +F +++R+
Sbjct: 232 --------EGHTSVHTLNFEYAVERV 249
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 162 bits (412), Expect = 9e-47
Identities = 52/238 (21%), Positives = 92/238 (38%), Gaps = 13/238 (5%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATA 284
I + + L + + RTP +LL GPP +GKT LA +A
Sbjct: 30 YIMNGIIKWGDPVTRVLDDGELLVQQTKNSD--RTPLVSVLLEGPPHSGKTALAAKIAEE 87
Query: 285 CNATFFSISAASLTSKYVGQGE-KLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA 343
N F I + + + + ++ +F A + Q S + +D+++ +L G
Sbjct: 88 SNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRF 146
Query: 344 SRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEA-VLRRFSKRIYVTLPDSKTRKS 402
S + L+ +LL++G T+R L E +L FS I+V P+ T +
Sbjct: 147 SNLVLQALLVLLKKAPPQG-RKLLIIGTTSRKDVLQEMEMLNAFSTTIHV--PNIATGEQ 203
Query: 403 LLEKLLNKHGNPLSQLELDAVAKLTEGYS---GSDLTNLAKDAALGPIRELNADQVIK 457
LLE L + E +A+ +G G + + +L E + +
Sbjct: 204 LLEAL--ELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLA 259
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 165 bits (419), Expect = 2e-45
Identities = 104/278 (37%), Positives = 148/278 (53%), Gaps = 47/278 (16%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLR-PELFT--GLRTPSRGLLLFGPPGNGKTMLARAV 281
V ++D+AG E AK+ L E+V L+ P F G R P +G+LL GPPG GKT LARAV
Sbjct: 28 VTFKDVAGAEEAKEELKEIVEF--LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAV 84
Query: 282 ATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG-- 339
A F + S + +VG G VR LF A+ P I+FIDE+D+V +R G
Sbjct: 85 AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 144
Query: 340 ----EHEASRRLKT--EFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIY 391
E E +T + L+E DG ++ ++VM ATNRP LD A+LR RF ++I
Sbjct: 145 GGNDERE-----QTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQIA 197
Query: 392 VTLPDSKTRKSLLEKLLNKH--GNPLSQ-LELDAVAKLTEGYSGSDLTNLAKDAALGPIR 448
+ PD K R E++L H G PL++ ++L +AK T G+ G+DL NL +AAL R
Sbjct: 198 IDAPDVKGR----EQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 253
Query: 449 ELNADQVIKVDLKSVRNISYRDFLESLKRI-----RRS 481
+ R I+ +D E+ R+ ++S
Sbjct: 254 ------------EGRRKITMKDLEEAADRVMMLPAKKS 279
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 163 bits (416), Expect = 3e-45
Identities = 108/278 (38%), Positives = 147/278 (52%), Gaps = 47/278 (16%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLR-PELFT--GLRTPSRGLLLFGPPGNGKTMLARAV 281
V ++D+ G E A + L E+V L+ P F G R P +G+LL GPPG GKT+LARAV
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF--LKDPSKFNRIGARMP-KGILLVGPPGTGKTLLARAV 69
Query: 282 ATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEG-- 339
A N FF IS + +VG G VR LFA A+ P I+FIDE+D+V R G
Sbjct: 70 AGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129
Query: 340 ----EHEASRRLKT--EFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIY 391
E E +T + L+E DG S ++VM ATNRP LD A+LR RF K+I
Sbjct: 130 GGHDERE-----QTLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKIV 182
Query: 392 VTLPDSKTRKSLLEKLLNKH--GNPLSQ-LELDAVAKLTEGYSGSDLTNLAKDAALGPIR 448
V PD R +K+L H PL++ + L+ +AK T G+ G+DL NL +AAL R
Sbjct: 183 VDPPDMLGR----KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAR 238
Query: 449 ELNADQVIKVDLKSVRNISYRDFLESLKRI-----RRS 481
+ I+ +DF E++ R+ R+S
Sbjct: 239 ------------EGRDKITMKDFEEAIDRVIAGPARKS 264
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding,
cytoplasm, disease mutation, hereditary spastic
paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Length = 89
Score = 108 bits (271), Expect = 6e-29
Identities = 46/84 (54%), Positives = 59/84 (70%), Gaps = 2/84 (2%)
Query: 122 LATQKEHHRKAFDLISKALKIDE-ENTGNKDVAIEFYKKGISELDKGIAVNCYYGSGEKW 180
+ H++AF+ IS AL+IDE E G K+ A+E+YKKGI EL+KGIAV G GE+
Sbjct: 6 AERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVT-GQGEQC 64
Query: 181 ERAQRLQEKMKNNLKMAKERLSIL 204
ERA+RLQ KM NL MAK+RL +L
Sbjct: 65 ERARRLQAKMMTNLVMAKDRLQLL 88
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 116
Score = 104 bits (259), Expect = 6e-27
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 119 DTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNCY--YGS 176
+ +E ++KAF ++K L DE G K+ A +YK+GI L +GI+++ +
Sbjct: 9 PAEIKIIREAYKKAFLFVNKGLNTDEL--GQKEEAKNYYKQGIGHLLRGISISSKESEHT 66
Query: 177 GEKWERAQRLQEKMKNNLKMAKERLSILS 205
G WE A+++Q+KMK L+ + RL IL
Sbjct: 67 GPGWESARQMQQKMKETLQNVRTRLEILE 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 93.4 bits (231), Expect = 4e-20
Identities = 73/444 (16%), Positives = 132/444 (29%), Gaps = 112/444 (25%)
Query: 128 HHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNCYYGSGEKWERAQRLQ 187
HH D + E KD+ F + D C + ++ +
Sbjct: 2 HHHHHMDF-----ETGEHQYQYKDILSVFEDAFVDNFD------CKDV--QDMPKSILSK 48
Query: 188 EKMKNNLKM--AKERL-----SILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQAL 240
E++ + + A ++LS ++ Q ++E+L I ++ +
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 241 HEMVI------------LPSL---RPELFTGLRT------PSRGLLLFGPPGNGKTMLAR 279
M I R + + LR P++ +L+ G G+GKT +A
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA- 167
Query: 280 AVATACNA----TFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSE 335
C + L K E ++ L + ++ P+ + D +
Sbjct: 168 --LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN--WTSRSDHSSNI 223
Query: 336 RKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDE----AVLRRFSK--R 389
+ H L+ + + N LLV L F+ +
Sbjct: 224 KLR-IHSIQAELRRLLKSK---PYENC---LLV---------LLNVQNAKAWNAFNLSCK 267
Query: 390 IYVTLPDSKTR-KSLLEKL---------LNKHGNPLSQLE-LDAVAKLTEGYSGSDLTNL 438
I +T TR K + + L L+ H L+ E + K DL
Sbjct: 268 ILLT-----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDLPRE 321
Query: 439 AKD---------AAL---GPIR-----ELNADQ---VIKVDLKSVRNISYRDFLESLKRI 478
A G +N D+ +I+ L + YR + L
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 479 RRSVS-PSSLIQYEAW-NRDYGDV 500
S P+ L+ W + DV
Sbjct: 382 PPSAHIPTILLSL-IWFDVIKSDV 404
Score = 45.2 bits (106), Expect = 5e-05
Identities = 79/581 (13%), Positives = 154/581 (26%), Gaps = 159/581 (27%)
Query: 19 NVSNKQLCFKYSIHERNFHVFSYPIILFFDIFRYIL-YLIIIF----FKYFYKCMTKLKL 73
Q +K I VF + FD + + I + +
Sbjct: 10 ETGEHQYQYK-DI----LSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 74 SSTFFSVIKKVRGNSVV---LATAPTPNTS---SVIITECKD---NVEMASTVGDTLLAT 124
+ F + + +V + N S I TE + M D L
Sbjct: 64 TLRLFWTLLS-KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 125 Q---KEHH--R-KAFDLISKALKIDEENTG---------NKDV-AIEFYK--KGISELDK 166
+++ R + + + +AL K A++ K ++D
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 167 GI---AVNCYYGSGEKWERAQRLQEKMKNNLKM--------------AKERLSILSVDSK 209
I + E Q+L ++ N + L L
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 210 LAQ--VVLDEI--------LEGGSPV----QWQDIAGQEVAKQALHEMVILPSLRPELFT 255
+VL + + +++ + A H +
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD------HHSM 296
Query: 256 GLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAM 315
L TP L + L + V ++ A
Sbjct: 297 TL-TPDEVKSLL-------------------LKYLDCRPQDL-PREVLTTNPRRLSIIA- 334
Query: 316 ARELQPSIIFIDEVDSVLSERKEGEHEAS-RRLKTEFLLE-FDGL-----HSNSEHRLLV 368
++ + D V ++ E+S L+ + FD L ++ LL
Sbjct: 335 -ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 369 MGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEK--------------LLNKHGNP 414
+ + + V+ + K SL+EK L
Sbjct: 394 LIWFDVIKSDVMVVVNKLHK------------YSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 415 LSQLE---LDAVAKLTEGYSGSDLTNLAKD----AALGPIREL-NADQVIKVDLKSVRNI 466
L +D + + + DL D + +G L N + ++ L R +
Sbjct: 442 EYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYSHIG--HHLKNIEHPERMTL--FRMV 496
Query: 467 SYRD--FLESLKRIRRSVSP--------SSLIQYEAWNRDY 497
+ D FLE ++IR + ++L Q + + + Y
Sbjct: 497 -FLDFRFLE--QKIRHDSTAWNASGSILNTLQQLKFY-KPY 533
Score = 41.0 bits (95), Expect = 8e-04
Identities = 40/311 (12%), Positives = 80/311 (25%), Gaps = 122/311 (39%)
Query: 9 TTGKSSKKEDNVSNKQ-LCFKY--SIHERNFHVFSYPIIL---------FFDIFRYILYL 56
+ E + Q L ++ + R+ H + + + Y L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 57 III-------FFKYF-YKCMTKLKLSSTFFSVIKKVRGNSVVLATAPTPNTSSVIITECK 108
+++ + F C L +T R V + T+ + +
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKI---LLTT--------RFKQVTDFLSAA-TTTHISLDHHS 295
Query: 109 DNVEMASTVGDTLLATQKEHHRKAFDLISKALKI-------------DEENTGNKDVAIE 155
+ LL K + DL + L D T +
Sbjct: 296 MTLTPDEVKS--LLL--KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT------WD 345
Query: 156 FYKKGISELDKGIAVNCYYGSGEKWERAQRLQEKMKNNLKMAKER-----LSILSVDSKL 210
+K VNC ++ + E N L+ A+ R LS+ + +
Sbjct: 346 NWKH----------VNC--------DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 211 AQVVLDEILEGGSPVQWQDIAGQEV----------------------------------- 235
++L ++ W D+ +V
Sbjct: 388 PTILL-SLI-------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 236 -AKQALHEMVI 245
+ ALH ++
Sbjct: 440 ENEYALHRSIV 450
Score = 30.6 bits (68), Expect = 1.5
Identities = 29/179 (16%), Positives = 57/179 (31%), Gaps = 47/179 (26%)
Query: 14 SKKEDNVSNKQLCFKYSIHERNFHVFSYPI-ILFFD---------------IFRYILY-- 55
K D + KYS+ E+ + I ++ + + Y +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 56 ------LIIIFFKYFY-------KCMTKLKLSSTF------FSVIK-KVRGNSVVL-ATA 94
+ +YFY K + + + F F ++ K+R +S A+
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 95 PTPNTSSVI------ITE-CKDNVEMASTVGDTLL-ATQKEHHRKAFDLISKALKIDEE 145
NT + I + + + + D L + K DL+ AL ++E
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Score = 29.4 bits (65), Expect = 3.7
Identities = 39/241 (16%), Positives = 61/241 (25%), Gaps = 105/241 (43%)
Query: 12 KSSKKEDNVSNKQLCFKYSIH------------ERNFH---VFSYPIILFFD-------- 48
S ++ SI E H V Y I FD
Sbjct: 414 YSLVEKQPKE-----STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 49 ----IFRYILY-LIIIFFKYFYKCMTKLKLSSTFFSVIKKVRGNSVVLATAPTPNTSSVI 103
+ +I + L I + L F +K+R + N S I
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--QKIR------HDSTAWNASGSI 520
Query: 104 ITECKDNVEMASTVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISE 163
+ +TL L +FYK I +
Sbjct: 521 L--------------NTLQ-----------QL-------------------KFYKPYICD 536
Query: 164 LDKGIAVNCYYGSGEKWERAQRLQEKMKNNLKMAKERLSILSVDSKLAQVVL----DEIL 219
D + +RL + + L +E L I S + L ++ L + I
Sbjct: 537 ND---------------PKYERLVNAILDFLPKIEENL-ICSKYTDLLRIALMAEDEAIF 580
Query: 220 E 220
E
Sbjct: 581 E 581
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 85.6 bits (211), Expect = 1e-18
Identities = 43/271 (15%), Positives = 86/271 (31%), Gaps = 31/271 (11%)
Query: 226 QWQDIAGQEVAKQALHEMVIL---PSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVA 282
+++ G + K + E L R +L TP+ + G PG GKT +A +A
Sbjct: 29 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMA 88
Query: 283 TAC-------NATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSE 335
S++ L +Y+G + + A ++FIDE +
Sbjct: 89 GLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRP 145
Query: 336 RKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ-----ELDEAVLRRFSKRI 390
E ++ E + + N+ L+V+ A + + + R + I
Sbjct: 146 DNERDYG------QEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHI 199
Query: 391 YVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYS-------GSDLTNLAKDAA 443
+ + +L+ ++ A+ + N A
Sbjct: 200 EFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRAR 259
Query: 444 LGPIRELNADQVIKVDLKSVRNISYRDFLES 474
L L +D +++ I+ D S
Sbjct: 260 LRQANRLFTASSGPLDARALSTIAEEDIRAS 290
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 66.2 bits (161), Expect = 8e-12
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 13/128 (10%)
Query: 215 LDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGK 274
LDE + + GQE A++A +V EL + R +LL GPPG GK
Sbjct: 26 LDESGL--AKQAASGLVGQENAREACGVIV-------ELIKSKKMAGRAVLLAGPPGTGK 76
Query: 275 TMLARAVATA--CNATFFSISAASLTSKYVGQGEKLVRALFA--MARELQPSIIFIDEVD 330
T LA A+A F + + + S + + E L+ R + ++ EV
Sbjct: 77 TALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVT 136
Query: 331 SVLSERKE 338
+ E
Sbjct: 137 ELTPCETE 144
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 64.1 bits (157), Expect = 4e-11
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMAREL---- 319
++L+GPPG GKT LA +A NA ISA V G K +R AR+
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAG 105
Query: 320 QPSIIFIDEV 329
+ +I+F+DEV
Sbjct: 106 RRTILFVDEV 115
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 54.4 bits (131), Expect = 3e-08
Identities = 48/238 (20%), Positives = 78/238 (32%), Gaps = 76/238 (31%)
Query: 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVA------ 282
I GQE K AL + P + G+L+FG G GK+ RA+A
Sbjct: 25 AIVGQEDMKLALLLTAVDPGIG------------GVLVFGDRGTGKSTAVRALAALLPEI 72
Query: 283 -------TACNATFFSISAASLTSKYVGQGEKLVRALFAMARE----------------- 318
+ A++ S V + V L E
Sbjct: 73 EAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGE 132
Query: 319 --LQPSII--------FIDEV--------DSVLSERKEGEHEASRRLKTEFLLEFDGLHS 360
+P ++ +IDE D +L + GE+ R DGL
Sbjct: 133 KAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVER----------DGLSI 182
Query: 361 NSEHRLLVMGATN-RPQELDEAVLRRFSKRIYVTLP---DSKTRKSLLEKLLNKHGNP 414
R +++G+ N +L +L RF + V + D +TR ++ + +P
Sbjct: 183 RHPARFVLVGSGNPEEGDLRPQLLDRF--GLSVEVLSPRDVETRVEVIRRRDTYDADP 238
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 3e-08
Identities = 67/428 (15%), Positives = 125/428 (29%), Gaps = 148/428 (34%)
Query: 174 YGSGE--------KWERAQRLQEKMKNNLKMAKERLSILSVDSKLAQVV---------LD 216
+GS E + A +LQE+ L E + D + +
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEG---FAADDEPTTPAELVGKFLGYVS 69
Query: 217 EILEGGSPVQWQDI-------------AGQEVAKQALHEMV--ILPSLRPELFTG---LR 258
++E Q+ + G ++ H + +L L ++
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-----HALAAKLLQENDTTLVKTKELIK 124
Query: 259 T--PSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMA 316
+R + + L RAV NA +I + GQG F
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEG-NAQLVAI--------FGGQGN--TDDYF--- 170
Query: 317 RELQ------PSII--FIDEVDSVLSERKEGEHEASR-----------------RLKTEF 351
EL+ ++ I LSE +A + ++
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 352 LLE------FDGL----H----------SNSEHRLLVMGATNRPQELDEAVLRRFSKRIY 391
LL G+ H + E R + GAT Q L AV ++
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA--IAE--- 285
Query: 392 VTLPDSKTRKSLLE------KLLNKHG------NPLSQLELDAVAKLTEGYSGS-----D 434
+ + +S +L G P + L + E G
Sbjct: 286 -----TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 435 LTNLAKDAALGPIRELNA----DQVIKVDLKSVRNISYRDF--------LESLK-RIRRS 481
++NL ++ + + N+ + +++ S+ N ++ L L +R++
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEI---SLVN-GAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 482 VSPSSLIQ 489
+PS L Q
Sbjct: 397 KAPSGLDQ 404
Score = 52.4 bits (125), Expect = 3e-07
Identities = 61/302 (20%), Positives = 98/302 (32%), Gaps = 91/302 (30%)
Query: 150 KDV---AIEFYKK--GISELD------KGIAVNCYYGSGEKWERAQRLQEKMKNNLKMAK 198
+DV A +K G S LD + + ++G E+ +R++E N M
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPVNLTI--HFGG----EKGKRIRE---NYSAMIF 1693
Query: 199 ERLSILSVDSKL-AQVVLDEILEGGSPVQWQDIAGQ----EVAKQ-AL--HEMVILPSLR 250
E VD KL + + EI E + ++ G + Q AL E L+
Sbjct: 1694 ET----IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-QPALTLMEKAAFEDLK 1748
Query: 251 PELFTGLRTPSRGLLLFGPPGNGKTMLARAVA-------TA--CNATFFSISAA------ 295
S+GL+ P A A A SI +
Sbjct: 1749 ----------SKGLI---PADA-------TFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 296 --SLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLL 353
V + E L R+ + M + P + L E +R T +L+
Sbjct: 1789 RGMTMQVAVPRDE-LGRSNYGMI-AINPGRVAASFSQEALQYVVE---RVGKR--TGWLV 1841
Query: 354 E---FDGLHSNSEHRLLVMGATNRPQELDEA--VLRRF-SKRI-YVTLPDSKTRKSLLEK 406
E + N E++ V R LD VL ++I + L S + + +
Sbjct: 1842 EIVNY-----NVENQQYVAAGDLR--ALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Query: 407 LL 408
L
Sbjct: 1895 LF 1896
Score = 43.9 bits (103), Expect = 1e-04
Identities = 57/369 (15%), Positives = 105/369 (28%), Gaps = 141/369 (38%)
Query: 39 FSYPIILFFDIFRYILYLIII------FFKYFYKCMTKLK---------LSST---FFSV 80
S P+I + Y++ ++ Y + + + FF
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 81 IKK---------VRGNSVVLATAPTPNTSSVIITECKDNVE-----MASTVGDTLLATQK 126
++K VR P + I+ + +N E M S T Q
Sbjct: 296 VRKAITVLFFIGVRCYE----AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 127 E-----HHRKAFDLISKALKIDEEN---TGN----KDVAIEFYK-KGISELDKG------ 167
H A + +L +N +G + + K K S LD+
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 168 -----------IAV--NCYYGSGEKWERAQRL--QEKMKNNLKMAKERLSI--------- 203
+A + + A L ++ +KNN+ + + I
Sbjct: 412 RKLKFSNRFLPVASPFHSHL-----LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 204 -L-SVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPS 261
L + +++ ++D I+ PV+W+ +A H
Sbjct: 467 DLRVLSGSISERIVDCIIR--LPVKWETT----TQFKATH-------------------- 500
Query: 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYV-GQGEKLVRALFAMARELQ 320
+L FGP G + LT + G G VR + A ++
Sbjct: 501 --ILDFGPGG-------------------ASGLGVLTHRNKDGTG---VRVIVAGTLDIN 536
Query: 321 PSIIFIDEV 329
P D+
Sbjct: 537 PD----DDY 541
Score = 30.8 bits (69), Expect = 1.2
Identities = 37/224 (16%), Positives = 70/224 (31%), Gaps = 68/224 (30%)
Query: 78 FSVIKKVRGNSVVLATAPTPNTSSVIITECKDNVE--MASTVGDTLLATQKEHHRKAFDL 135
FS++ V N V L I ++N + T+ D L T+K
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRI----RENYSAMIFETIVDGKLKTEKIFKEINEHS 1714
Query: 136 ISKALKIDEE---NTGNKDVAI---------EFYKKGISELDKGIAVNCYYG-S-GE--- 178
S + ++ T A+ + KG+ D A G S GE
Sbjct: 1715 TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFA-----GHSLGEYAA 1769
Query: 179 --------KWE--------RAQRLQEKMKNNLKMAKERLSILSVD-----SKLAQVVLDE 217
E R +Q + + ++ + +++++ + +Q L
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRD-ELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 218 ILEG-----GSPVQWQDIA-----GQEVA----KQALHEMV-IL 246
++E G V+ I Q+ +AL + +L
Sbjct: 1829 VVERVGKRTGWLVE---IVNYNVENQQYVAAGDLRALDTVTNVL 1869
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast
structural genomics consortium (NESG), target HR3102A,
PSI-2; NMR {Homo sapiens}
Length = 86
Score = 49.8 bits (120), Expect = 3e-08
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 390 IYVTLPDSKTRKSLLE---KLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGP 446
+ + P+ + R +L+ + +N + L +A+L G SG+++ + +A +
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMNLTRG----INLRKIAELMPGASGAEVKGVCTEAGMYA 61
Query: 447 IRELNADQVIKVD-LKSVRNISYRD 470
+RE V + D +V + +D
Sbjct: 62 LRE-RRVHVTQEDFEMAVAKVMQKD 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Homo sapiens}
Length = 78
Score = 44.8 bits (107), Expect = 2e-06
Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 394 LPDSKTRKSLLE---KLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIREL 450
P+ + R +L+ + +N + L +A+L G SG+++ + +A + +RE
Sbjct: 2 PPNEEARLDILKIHSRKMNLTRG----INLRKIAELMPGASGAEVKGVCTEAGMYALRE- 56
Query: 451 NADQVIKVD-LKSVRNISYRD 470
V + D +V + +D
Sbjct: 57 RRVHVTQEDFEMAVAKVMQKD 77
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 48.8 bits (117), Expect = 2e-06
Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Query: 230 IAGQEVAK----QALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC 285
I GQ AK AL L+ L + +L+ GP G GKT +AR +A
Sbjct: 17 IIGQADAKRAVAIALRNRWRRMQLQEPL--RHEVTPKNILMIGPTGVGKTEIARRLAKLA 74
Query: 286 NATFFSISAASLT-SKYVGQGE--KLVRAL----FAMARELQPSIIFIDEVDSVLSERKE 338
NA F + A T YVG+ + A+ Q I+FIDE+D + + +
Sbjct: 75 NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY 134
Query: 339 GEHEASRR 346
+ SR
Sbjct: 135 SGADVSRE 142
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 45.3 bits (107), Expect = 4e-05
Identities = 30/147 (20%), Positives = 45/147 (30%), Gaps = 33/147 (22%)
Query: 224 PVQWQDIAGQEVAKQALHEMV-----ILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLA 278
P Q + G + + L + + R +L+GPPG GKT A
Sbjct: 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 94
Query: 279 RAVATAC-------NATFFS-----------ISAASLTSKYVGQGEKLVRALFAMARELQ 320
VA NA S + A VG + A +
Sbjct: 95 HLVAQELGYDILEQNA---SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGK--- 148
Query: 321 PSIIFIDEVDSVLSERKEGEHEASRRL 347
+I +DEVD + G+ +L
Sbjct: 149 HFVIIMDEVDGMSG----GDRGGVGQL 171
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 43.6 bits (103), Expect = 1e-04
Identities = 38/193 (19%), Positives = 57/193 (29%), Gaps = 55/193 (28%)
Query: 264 LLLFGPPGNGKTMLARAVATA-CNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPS 322
+ L GPPG K+++AR + A NA F M R P
Sbjct: 44 VFLLGPPGIAKSLIARRLKFAFQNARAFEY-----------L----------MTRFSTPE 82
Query: 323 IIFIDEVDSVLSERKEGEHEASRRL-KTEF----------------LLEF--------DG 357
+F L + E S L + E LL
Sbjct: 83 EVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGA 142
Query: 358 LHSNSEHRLLVMGATNRPQELD---EAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNP 414
RLLV A+N E D EA+ R R+++ K+ +L
Sbjct: 143 HVEKIPMRLLVA-ASNELPEADSSLEALYDRMLIRLWLDKVQ---DKANFRSML-TSQQD 197
Query: 415 LSQLELDAVAKLT 427
+ + ++T
Sbjct: 198 ENDNPVPDALQVT 210
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone,
chaperone-protein binding complex; HET: DNA; 3.80A
{Saccharomyces cerevisiae} PDB: 4a3v_B*
Length = 88
Score = 38.7 bits (91), Expect = 3e-04
Identities = 13/81 (16%), Positives = 35/81 (43%), Gaps = 21/81 (25%)
Query: 419 ELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRI 478
+ +++L +G++L ++ +A + IR + + +DFL+++ ++
Sbjct: 24 RWELISRLCPNSTGAELRSVCTEAGMFAIR------------ARRKVATEKDFLKAVDKV 71
Query: 479 -----RRSVSPSSLIQYEAWN 494
+ SS +Y +N
Sbjct: 72 ISGYKKF----SSTSRYMQYN 88
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 41.5 bits (98), Expect = 4e-04
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 265 LLFGPPGNGKTMLARAVATACNATFFSISAASLT-SKYVGQG-EKLVRALFAMA----RE 318
LL GP G+GKT++A+ +A + A SLT + YVG+ E ++ L + ++
Sbjct: 76 LLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQK 135
Query: 319 LQPSIIFIDEVD 330
Q I+FIDE+D
Sbjct: 136 AQKGIVFIDEID 147
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 41.0 bits (97), Expect = 6e-04
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 265 LLFGPPGNGKTMLARAVATACNATFFSISAASLT-SKYVGQG-EKLVRALFAMA----RE 318
LL GP G+GKT+LA +A + F A +LT + YVG+ E +++ L ++
Sbjct: 55 LLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQK 114
Query: 319 LQPSIIFIDEVD 330
Q I++ID++D
Sbjct: 115 AQRGIVYIDQID 126
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin,
S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B*
2dvw_B*
Length = 83
Score = 37.3 bits (87), Expect = 9e-04
Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 420 LDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVD-LKSVRNISYRD 470
L+ + SG+D+ ++ +++ + +RE N V+ D K+ + + +D
Sbjct: 25 LEDYVARPDKISGADINSICQESGMLAVRE-NRYIVLAKDFEKAYKTVIKKD 75
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 39.3 bits (91), Expect = 0.001
Identities = 29/163 (17%), Positives = 47/163 (28%), Gaps = 38/163 (23%)
Query: 265 LLFGPPGNGKTMLA------------------RAVAT-----ACNATFFSISAASLTSKY 301
L+ G PG+GKT+ R V T T+ A L
Sbjct: 9 LITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKST 68
Query: 302 VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSN 361
Q + E SI+ +DE V ++ E +
Sbjct: 69 DEQLSAHDMYEWIKKPENIGSIVIVDEAQDVWP------ARSAGSKIPENVQWL------ 116
Query: 362 SEHR---LLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRK 401
+ HR + + T P+ LD+ + K ++ R
Sbjct: 117 NTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMGMRT 159
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 38.9 bits (91), Expect = 0.003
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 186 LQEKMKNNLKMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVI 245
+ + K N + R S++ + +EI + + GQE A + +
Sbjct: 1 MGDNEKINREALAPREYGESLELGIEFTTTEEIEVPEKLID--QVIGQEHAVEVIK---- 54
Query: 246 LPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVA 282
T R +LL G PG GK+ML +A+A
Sbjct: 55 ---------TAANQK-RHVLLIGEPGTGKSMLGQAMA 81
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 38.7 bits (91), Expect = 0.003
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 14/69 (20%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRA--LFAMARELQP 321
+LL GPPG GKT LA +A+ +TS G LV+ + A+ L+
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNI------HVTS-----GPVLVKQGDMAAILTSLER 102
Query: 322 S-IIFIDEV 329
++FIDE+
Sbjct: 103 GDVLFIDEI 111
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 38.7 bits (91), Expect = 0.003
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 21/109 (19%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P + GQE K+ L+ + R E +L GP G GKT LA ++
Sbjct: 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNE-------CLDHILFSGPAGLGKTTLANIISY 77
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRA--LFAMARELQPS-IIFIDEV 329
+A + + + ++ L A+ L I+FIDE+
Sbjct: 78 EMSANIKTTA-----------APMIEKSGDLAAILTNLSEGDILFIDEI 115
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} PDB: 2dzo_B
Length = 82
Score = 35.8 bits (83), Expect = 0.003
Identities = 11/73 (15%), Positives = 29/73 (39%), Gaps = 13/73 (17%)
Query: 420 LDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKR-I 478
LD++ + SG+ + + ++A L +R+ N +++ D E+ +
Sbjct: 22 LDSLIIRNDSLSGAVIAAIMQEAGLRAVRK-NRYVILQ-----------SDLEEAYATQV 69
Query: 479 RRSVSPSSLIQYE 491
+ + Y+
Sbjct: 70 KTDNTVDKFDFYK 82
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 38.2 bits (88), Expect = 0.005
Identities = 28/220 (12%), Positives = 65/220 (29%), Gaps = 30/220 (13%)
Query: 264 LLLFGPPGNGKTMLARAVA-----------TACNATFFSISAASLTSKYVGQGEKLVRAL 312
L G G GKT +++ + + ++ + L L
Sbjct: 48 NLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKL 107
Query: 313 F--AMARELQPSIIFIDEVDSVLSERK------EGEHEASRRLKTEFLLEFDGLHSNSEH 364
++ + +ID++ + + E + RR L + S+
Sbjct: 108 TGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQL----LRSDA 163
Query: 365 RLLVMGATNR---PQELDEAVLRRFSKRIYVTLPDSKTRKSLLEK--LLNKHGNPLSQLE 419
+ V+ +N ++ VL + D++ K +L K
Sbjct: 164 NISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEI 223
Query: 420 LDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVD 459
L +A ++ G A + + + +I+ +
Sbjct: 224 LSYIAAISAKEHGD--ARKAVNLLFRAAQLASGGGIIRKE 261
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 37.9 bits (87), Expect = 0.007
Identities = 35/280 (12%), Positives = 71/280 (25%), Gaps = 44/280 (15%)
Query: 245 ILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAV----ATACNATFFSISAASLTSK 300
+ L L R L G PG GKT+ R + A F I+ +
Sbjct: 29 LDILLGNWLRNPGHHYPR-ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87
Query: 301 Y------------------VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHE 342
+ + E L + + + +D+ ++ +
Sbjct: 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILS---- 143
Query: 343 ASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQ---ELDEAVLRRFSKRIYVTLPDSKT 399
F+ R+ ++ + LD + K + P +K
Sbjct: 144 -------TFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKD 196
Query: 400 R-----KSLLEKLLNKHGNPLSQLELDA--VAKLTEGYSGSDLTNLAKDAALGPIRELNA 452
+ + L + L++ A T + LA D
Sbjct: 197 QIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256
Query: 453 DQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEA 492
+ + + VR S + + + + A
Sbjct: 257 NGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLA 296
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 36.6 bits (84), Expect = 0.017
Identities = 39/256 (15%), Positives = 80/256 (31%), Gaps = 44/256 (17%)
Query: 264 LLLFGPPGNGKTMLARAV------ATACNATFFSISAASLTSKY---------------- 301
+ ++G G GKT + + V I+ + + Y
Sbjct: 48 IFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPF 107
Query: 302 --VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLH 359
+ E R + A+ +I +DE+D+ + + + + L + ++
Sbjct: 108 TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-----------DILYKLSRIN 156
Query: 360 SNSEH-RLLVMGATNR---PQELDEAVLRRFSKRIYVTLP-DSKTRKSLLEKLLNKHGNP 414
S ++ +G TN LD V S+ + P +++ + +L K P
Sbjct: 157 SEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKP 216
Query: 415 --LSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFL 472
L + A L G A D + KV + V
Sbjct: 217 GVLPDNVIKLCAALAAREHGD--ARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274
Query: 473 ESLKRIRRSVSPSSLI 488
+ ++ I ++ S +
Sbjct: 275 DRVRDIILTLPFHSKL 290
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 35.0 bits (81), Expect = 0.022
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 262 RGLLLFGPPGNGKTMLARAVATAC 285
+GL G PG GKT LA A A
Sbjct: 39 KGLTFVGSPGVGKTHLAVATLKAI 62
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 36.3 bits (85), Expect = 0.022
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSIS 293
L L GPPG GKT LA+++A + F IS
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRIS 140
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 36.1 bits (83), Expect = 0.023
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 220 EGGSPVQ-WQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLA 278
+ P Q Q + GQ A++A + E+ + R +L+ G PG GKT +A
Sbjct: 35 DALEPRQASQGMVGQLAARRAA-------GVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87
Query: 279 RAVATA--CNATFFSISAASLTSKYVGQGEKLVRA 311
+A A + F +I+ + + S + + E L +A
Sbjct: 88 MGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQA 122
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 36.7 bits (85), Expect = 0.023
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 257 LRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKY 301
L+ ++L G GKT+L R VA +
Sbjct: 1605 LKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQP---KIHRHS 1646
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 35.6 bits (83), Expect = 0.026
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 15/70 (21%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRA--LFAM-ARELQ 320
LLLFGPPG GKT LA +A +TS G + + L A+ A L+
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNL------RVTS-----GPAIEKPGDLAAILANSLE 89
Query: 321 PS-IIFIDEV 329
I+FIDE+
Sbjct: 90 EGDILFIDEI 99
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli}
SCOP: c.37.1.20
Length = 195
Score = 35.0 bits (81), Expect = 0.031
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 30/150 (20%)
Query: 266 LFGPPGNGKTMLARAVA----------TACNATFFSISAASLT--SKYVGQGEKLVRALF 313
L G PG GKT + +A ++ +L +KY G+ E+ ++ +
Sbjct: 48 LIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVL 107
Query: 314 AMARELQPSII-FIDEVDSVLSERK-EGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGA 371
+ + ++I FIDE+ +++ K +G +A LK L LH +GA
Sbjct: 108 NDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKP--ALARGELH--------CVGA 157
Query: 372 TNRPQ-----ELDEAVLRRFSKRIYVTLPD 396
T + E D A+ RRF K ++V P
Sbjct: 158 TTLDEYRQYIEKDAALERRFQK-VFVAEPS 186
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics,
structural genomics consortium, SGC, unknown function;
1.70A {Plasmodium falciparum}
Length = 187
Score = 34.6 bits (80), Expect = 0.033
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 31/150 (20%)
Query: 266 LFGPPGNGKTMLARAVA----------TACNATFFSISAASLT--SKYVGQGEKLVRALF 313
L G PG GKT + +A + S+ +SL +KY G E+ ++++
Sbjct: 48 LLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSIL 107
Query: 314 AMARELQPSII-FIDEVDSVLSERK--EGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMG 370
++ + ++ FIDE+ +V+ EG +A LK +L L +G
Sbjct: 108 KEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKP--MLARGELR--------CIG 157
Query: 371 ATNRPQ-----ELDEAVLRRFSKRIYVTLP 395
AT + E D+A+ RRF + I V P
Sbjct: 158 ATTVSEYRQFIEKDKALERRFQQ-ILVEQP 186
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.7.14.1
Length = 117
Score = 33.5 bits (76), Expect = 0.042
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 115 STVGDTLLATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNCYY 174
+ G + +++ + +KA DL SKA E+ GN + A++ Y+ + Y+
Sbjct: 1 GSSGSSGMSSTSPNLQKAIDLASKA--AQEDKAGNYEEALQLYQHAVQ----------YF 48
Query: 175 GSGEKWER-AQRLQEKMKNNLKMAKER 200
K+E + ++ ++ +R
Sbjct: 49 LHVVKYEAQGDKAKQSIRAKCTEYLDR 75
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Length = 93
Score = 32.2 bits (73), Expect = 0.069
Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 130 RKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNCYYGSGEKWERAQRLQEK 189
A ++ +A ++ + A+ Y++GI L + + K + +
Sbjct: 13 TAAVAVLKRA--VELDAESRYQQALVCYQEGIDMLLQVL----------KGTKESSKRCV 60
Query: 190 MKNNLKMAKER 200
++ + +R
Sbjct: 61 LRTKISGYMDR 71
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 33.7 bits (78), Expect = 0.078
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 264 LLLFGPPGNGKTMLARAVA 282
LL GPPG GKT A A+A
Sbjct: 41 LLFSGPPGTGKTATAIALA 59
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 33.5 bits (77), Expect = 0.083
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 262 RGLLLFGPPGNGKTMLARAVA 282
+GL L G G GKT L A+A
Sbjct: 55 KGLYLHGSFGVGKTYLLAAIA 75
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 34.2 bits (78), Expect = 0.088
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 20/81 (24%)
Query: 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQP 321
R L GP +GKT LA A+ C +++ + EL
Sbjct: 170 RYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF----------------ELGV 213
Query: 322 ----SIIFIDEVDSVLSERKE 338
++ ++V E ++
Sbjct: 214 AIDQFLVVFEDVKGTGGESRD 234
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 34.5 bits (80), Expect = 0.090
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 48/187 (25%)
Query: 131 KAFDLISKA---LKIDEENTGNKDVAIEFYKKGISEL--DKGIAVNCYYGSGEKWERAQR 185
KA DLI +A +++ T +E + + E+ +K AV +++E+A
Sbjct: 373 KAIDLIDEAGSKVRLRSFTTPPNLKELE---QKLDEVRKEKDAAV-----QSQEFEKAAS 424
Query: 186 L---QEKMKNNLKMAKERLSILSVDSKLAQVVLDEILE-----GGSPVQWQDIAGQEVAK 237
L +++++ ++ K+ + ++V +D+I G PV IA E K
Sbjct: 425 LRDTEQRLREQVEDTKKSWK-EKQGQENSEVTVDDIAMVVSSWTGVPVS--KIAQTETDK 481
Query: 238 -----QALHEMVI-----LPSL-------RPELFTGLRTPSR--GLLLF-GPPGNGKTML 277
LH VI + ++ R GL+ P R G +F GP G GKT L
Sbjct: 482 LLNMENILHSRVIGQDEAVVAVAKAVRRAR----AGLKDPKRPIGSFIFLGPTGVGKTEL 537
Query: 278 ARAVATA 284
ARA+A +
Sbjct: 538 ARALAES 544
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 33.7 bits (77), Expect = 0.13
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 260 PSRGLLLFGPPGNGKTMLARAVA 282
+GL L+G G GK+ L A+A
Sbjct: 151 EQKGLYLYGDMGIGKSYLLAAMA 173
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 33.5 bits (76), Expect = 0.13
Identities = 13/135 (9%), Positives = 40/135 (29%), Gaps = 12/135 (8%)
Query: 247 PSLRPELFTG--------LRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298
P + F + L+ G GK+ + + N + +
Sbjct: 8 PKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE 67
Query: 299 SKYVGQGEKLVRALFAMARELQPS----IIFIDEVDSVLSERKEGEHEASRRLKTEFLLE 354
+ + + L +L + + + ++ E + +R+ + F
Sbjct: 68 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANL 127
Query: 355 FDGLHSNSEHRLLVM 369
+ S+ ++++
Sbjct: 128 LESFEQASKDNVIIV 142
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 33.8 bits (78), Expect = 0.14
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 265 LLFGPPGNGKTMLARAVATA----------CNATFFSISAASLT--SKYVGQGEKLVRAL 312
LL G G GKT +A +A + T +S+ SL +KY G EK +AL
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 313 FAMARELQPSIIFIDEV 329
+ SI+FIDE+
Sbjct: 271 LKQLEQDTNSILFIDEI 287
Score = 32.2 bits (74), Expect = 0.39
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 256 GLRTPSR--GLLLF-GPPGNGKTMLARAVATA 284
GL + G LF GP G GKT + ++ A
Sbjct: 480 GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 33.3 bits (77), Expect = 0.14
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 261 SRG-LLLFGPPGNGKTMLARAVATACNATF 289
+ G +LL G PG KT+ +A + F
Sbjct: 45 TGGHILLEGVPGLAKTLSVNTLAKTMDLDF 74
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 33.0 bits (75), Expect = 0.15
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 256 GLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSI 292
G++TP +++ G P GKT L++A+AT S
Sbjct: 1 GMQTP-ALIIVTGHPATGKTTLSQALATGLRLPLLSK 36
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 33.5 bits (77), Expect = 0.15
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 18/62 (29%)
Query: 224 PVQWQDIAGQEVAKQALHEMV---ILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARA 280
P ++ GQ+ Q L V +P L L GPPG GKT A A
Sbjct: 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHL---------------LFSGPPGTGKTATAIA 57
Query: 281 VA 282
+A
Sbjct: 58 LA 59
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia
coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E*
1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 33.2 bits (76), Expect = 0.20
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 263 GLLLFGPPGNGKTMLARAVATACN 286
LL+ PG G L A++
Sbjct: 26 ALLIQALPGMGDDALIYALSRYLL 49
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 32.7 bits (75), Expect = 0.23
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 264 LLLFGPPGNGKTMLARAVA 282
LL GPPG GKT A A+A
Sbjct: 49 LLFAGPPGVGKTTAALALA 67
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 32.4 bits (73), Expect = 0.25
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFSISA 294
P+R +++ G G+GKT +A VA F A
Sbjct: 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADA 62
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 32.9 bits (75), Expect = 0.28
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 257 LRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKY 301
R P LL G G GK++L+R VA + ++I + + Y
Sbjct: 1642 FRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTI---KVNNNY 1683
Score = 32.2 bits (73), Expect = 0.47
Identities = 38/221 (17%), Positives = 78/221 (35%), Gaps = 32/221 (14%)
Query: 219 LEGGSPVQWQDIAGQ---EVAKQALHEMVI--LPSLRPE-LFTGLRTPSRGLLLFGPPGN 272
++ + W++ E K A ++VI + + R + + R L+L GPPG+
Sbjct: 1256 IDDANWSLWKNKVPSVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGS 1315
Query: 273 GKTMLARAVATACN---ATFFSISAA--------SLTSKYVGQGEKLVRALFAMARELQP 321
GKTM + A + S+A + + + + +
Sbjct: 1316 GKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKW 1375
Query: 322 SIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSE------HRLLVMGATNRP 375
++F DE++ ++ K G ++ ++E G S+ ++ +GA N P
Sbjct: 1376 LVVFCDEINLPSTD-KYGTQRVITFIR--QMVEKGGFWRTSDHTWIKLDKIQFVGACNPP 1432
Query: 376 -----QELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKH 411
+L LR + V P + + +
Sbjct: 1433 TDAGRVQLTHRFLRHAPI-LLVDFPSTSSLTQIYGTFNRAL 1472
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 32.0 bits (72), Expect = 0.28
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFSIS 293
+R ++L G GK+ + R + + + +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 32.4 bits (74), Expect = 0.33
Identities = 14/81 (17%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 131 KAFDLISKALKIDEEN-------------TGNKDVAIEFYKKGISELDKGIAVNCYYGSG 177
+A +L+ KA K+D + + D AI +++ +L + +
Sbjct: 433 EATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA-DLARTME-EKLQAIT 490
Query: 178 EKWERAQRLQEKMKNNLKMAK 198
+ A ++Q++++++ +AK
Sbjct: 491 --FAEAAKVQQRIRSDPVLAK 509
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 32.2 bits (72), Expect = 0.33
Identities = 21/193 (10%), Positives = 49/193 (25%), Gaps = 38/193 (19%)
Query: 229 DIAGQEVAKQALHEMVILP-------SLRPELFTGLRTPSRG-LLLFGPPGNGKTMLARA 280
DI +E +++L + +L + ++ L + + + K L
Sbjct: 5 DINLEESIRESLQKRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVND 64
Query: 281 VAT----------ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVD 330
V + I A L + + + D
Sbjct: 65 VMDELITSSARKELPIFDYIHIDALELAGMD--------ALYEKIWFAISKENLCGDISL 116
Query: 331 SVLSERKEGEHEASRRLKTEFLLEFDGLHSN------------SEHRLLVMGATNRPQEL 378
L+ +A +R + + L S +L ++ +
Sbjct: 117 EALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTI 176
Query: 379 DEAVLRRFSKRIY 391
E + S + +
Sbjct: 177 REQINIMPSLKAH 189
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.36
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 178 EKWERAQRLQEKMKNNLKM-AKERLSILSVDSKL 210
EK Q L+ K++ +LK+ A + L++ + +
Sbjct: 18 EK----QALK-KLQASLKLYADDSAPALAIKATM 46
Score = 28.4 bits (62), Expect = 3.4
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 31/55 (56%)
Query: 237 KQALHEMVILPSLRPELFTGLRTPSRGLLLFGP---PGNGKTMLARAVATACNAT 288
KQAL ++ SL+ L+ P A A AT
Sbjct: 19 KQALKKLQ--ASLK---------------LYADDSAP-----------ALAIKAT 45
Score = 28.0 bits (61), Expect = 4.9
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 191 KNNLKMAKERLSILSVDSKLAQVVLDEILE 220
K LK + L + + DS A + + +E
Sbjct: 19 KQALKKLQASLKLYADDSAPA-LAIKATME 47
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 31.1 bits (71), Expect = 0.44
Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 38/150 (25%)
Query: 252 ELFTGLRTPSRGLL-LFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVR 310
EL LR + ++G G GK+ L +A A + Y+ +
Sbjct: 26 ELVYVLRHKHGQFIYVWGEEGAGKSHLLQAW---VAQ----ALEAGKNAAYIDAASMPLT 78
Query: 311 ALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMG 370
+ + +D+V+ + +E + F+ NS L++G
Sbjct: 79 DAAF-----EAEYLAVDQVEKLGNEEQA-----------LLFSIFNRFR-NSGKGFLLLG 121
Query: 371 ATNRPQELDEAVLRRFSKRIYVTLPDSKTR 400
+ PQ+L D +TR
Sbjct: 122 SEYTPQQLV-------------IREDLRTR 138
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 31.8 bits (71), Expect = 0.47
Identities = 29/227 (12%), Positives = 67/227 (29%), Gaps = 41/227 (18%)
Query: 245 ILPSLRPELFTGLRTPSRGLLLF--GPPGNGKTMLARAVAT---------ACNATFFSIS 293
+ L +G ++ G G GKT LA+ ++
Sbjct: 34 LARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93
Query: 294 AASLTSKY------------------VGQGEKLVRALFAMARELQPSIIFIDEVDSVLSE 335
A + + Y + L + + E ++ +DE S+LS
Sbjct: 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSS 153
Query: 336 RKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELD------EAVLRRFSKR 389
+ L T + + + +R+ + + + L V + +
Sbjct: 154 PRIAAE----DLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFK 209
Query: 390 IYVTLPDSKTRKSLLEKLLNK--HGNPLSQLELDAVAKLTEGYSGSD 434
+++ S+ ++LE+ L+ ++ + G D
Sbjct: 210 LHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 256
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport,
vacuole, endosome, transport, ESCRT-III, VPS2, VPS4,
SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Length = 85
Score = 29.5 bits (66), Expect = 0.62
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 130 RKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNCYYGSGEKWERAQRLQEK 189
K +L+ KA ID + + A Y G+ L + K+E+ + ++
Sbjct: 11 TKGIELVQKA--IDLDTATQYEEAYTAYYNGLDYLMLAL----------KYEKNPKSKDL 58
Query: 190 MKNNLKMAKER 200
++ R
Sbjct: 59 IRAKFTEYLNR 69
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 31.4 bits (72), Expect = 0.67
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 256 GLRTPSR--GLLLF-GPPGNGKTMLARAVATA 284
GL+ P+R G LF GP G GKT LA+ +A
Sbjct: 39 GLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 30.5 bits (68), Expect = 0.77
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSI 323
+L+ G PG GKT +A +A + F + L + E EL I
Sbjct: 13 ILITGTPGTGKTSMAEMIAAELDG-FQHLEVGKLVKENHFYTE--------YDTELDTHI 63
Query: 324 IFIDEVDSVLSERKE 338
I + D +L +
Sbjct: 64 IEEKDEDRLLDFMEP 78
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 30.8 bits (69), Expect = 0.81
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 257 LRTPSRGLLLFGPPGNGKTMLARAVATACNATFF 290
+R +++ G G+GK+ + A+A AC F
Sbjct: 14 VRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFI 47
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 30.5 bits (69), Expect = 0.82
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 20/84 (23%)
Query: 125 QKEHHRKAFDLISKALKIDEENT-------------GNKDVAIEFYKKGISELDKGIAV- 170
+ ++ KA+ + L+ N G + A+ Y+K + +L+
Sbjct: 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL-QLEADNLAA 124
Query: 171 -----NCYYGSGEKWERAQRLQEK 189
N YY + E+ ++ K
Sbjct: 125 NIFLGNYYYLTAEQEKKKLETDYK 148
Score = 28.2 bits (63), Expect = 4.8
Identities = 8/58 (13%), Positives = 13/58 (22%), Gaps = 14/58 (24%)
Query: 121 LLATQKEHHRKAFDLISKALKIDEEN-------------TGNKDVAIEFYKKGISELD 165
E +K + K L + T + A +K I
Sbjct: 131 YYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI-LRF 187
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 30.8 bits (69), Expect = 0.88
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 265 LLFGPPGNGKTMLARAVATA 284
L P G GK+MLA +A
Sbjct: 34 ALVSPGGAGKSMLALQLAAQ 53
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 30.2 bits (68), Expect = 0.96
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 17/97 (17%)
Query: 109 DNVEMASTVGDTLLATQKEH-HRKAFDLISKALKIDEENT-------------GNKDVAI 154
+N E+ + + L +H + +I KAL +D N AI
Sbjct: 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI 135
Query: 155 EFYKKGISELDKGIAVNCYYGSGEKWERAQRLQEKMK 191
E ++K + I E A+ LQ +
Sbjct: 136 ELWQKVMDLNSPRIN---RTQLVESINMAKLLQRRSD 169
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 30.8 bits (70), Expect = 1.0
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 4/98 (4%)
Query: 178 EKWERAQRLQEKMKNNLKMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAK 237
++ Q + L+ A++ L + L ++L + V
Sbjct: 26 QELGDFSAYQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGLT--EENVVG 83
Query: 238 QALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKT 275
+ + + L S+ ++LFG G GKT
Sbjct: 84 KLQEILCDM--LPSADKWQEPIHSKYIVLFGSTGAGKT 119
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 30.0 bits (67), Expect = 1.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSIS 293
+LL G PG GKT L + +A+ + ++
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINVG 43
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 30.4 bits (68), Expect = 1.2
Identities = 26/215 (12%), Positives = 54/215 (25%), Gaps = 58/215 (26%)
Query: 265 LLFGPPGNGKTMLARAVATACNATF-----------------------------FSISAA 295
+L G PG+GK+ +A + N + +
Sbjct: 28 ILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKV 87
Query: 296 SLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSV--------------LSERKEGEH 341
+ + G + V + + +E +V +
Sbjct: 88 AEMIENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNK 147
Query: 342 EASRRLKTEFLLEFDGLHSNSEH---RLLVMGATNR---PQELDEAVLRRFSKRIYVTLP 395
A + ++ DG H + A R P D + K +
Sbjct: 148 LAQDSINIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKIL----- 202
Query: 396 DSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGY 430
K+ L K+ + H + + ++K
Sbjct: 203 ----AKTSLCKVSSHHKFYSTSSVFEKLSKTFSQT 233
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 30.3 bits (69), Expect = 1.3
Identities = 13/97 (13%), Positives = 30/97 (30%), Gaps = 22/97 (22%)
Query: 108 KDNVEMASTVGDTLLATQKEHHRKAFDLISKALKIDEEN-------------TGNKDVAI 154
++N+++ ++ + + + L S ++ D + +
Sbjct: 19 QENLDVVVSLAERHY--YNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELF 76
Query: 155 EFYKKGISELDKGIAV------NCYYGSGEKWERAQR 185
K + +L V Y G K E A+R
Sbjct: 77 YLSHKLV-DLYPSNPVSWFAVGCYYLMVGHKNEHARR 112
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 30.6 bits (69), Expect = 1.3
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 11/59 (18%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVA 282
P ++ E L + P P L LL+GP G GK A+
Sbjct: 10 PKSLNALSHNEELTNFLKSLSDQPRDLPHL-----------LLYGPNGTGKKTRCMALL 57
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 30.1 bits (67), Expect = 1.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 264 LLLFGPPGNGKTMLARAVA 282
LLL G PG+GK+ +A A+A
Sbjct: 12 LLLSGHPGSGKSTIAEALA 30
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 29.8 bits (68), Expect = 1.4
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 258 RTPSRGLL--LFGPPGNGKTMLARAVATACNATFFSISA 294
+ + G + L GP GK+ + R + FS+SA
Sbjct: 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSA 53
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 30.3 bits (68), Expect = 1.5
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 215 LDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRG-LLLFGPPGNG 273
GS W+ I Q + + + +L+ L P + L GPP G
Sbjct: 86 CKLATGEGS---WKSIL-TFFNYQNIELITFINALKLWL---KGIPKKNCLAFIGPPNTG 138
Query: 274 KTMLARAVATACNATFFSI 292
K+ML ++ + S
Sbjct: 139 KSMLCNSLIHFLGGSVLSF 157
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 30.1 bits (68), Expect = 1.5
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 12/59 (20%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVA 282
P ++ GQ + + V L P LL +GPPG GKT A+A
Sbjct: 21 PETLDEVYGQNEVITTVRKFVDEGKL----------PH--LLFYGPPGTGKTSTIVALA 67
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 30.0 bits (68), Expect = 1.7
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 26 CFKYSIHERNFHVFSYPIILFFDIFRYILYLIIIFFKYF 64
Y + S+ I +F + +I+ LI+IFF Y
Sbjct: 189 GIDYYTPHEETNNESFVIYMF--VVHFIIPLIVIFFCYG 225
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 30.5 bits (69), Expect = 1.7
Identities = 13/87 (14%), Positives = 34/87 (39%), Gaps = 17/87 (19%)
Query: 125 QKEHHRKAFDLISKALKIDEENT-------------GNKDVAIEFYKKGISELDKGIAVN 171
+E A L++KA ++D + D AIE ++ L + +
Sbjct: 440 DEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA-ILARTMD-E 497
Query: 172 CYYGSGEKWERAQRLQEKMKNNLKMAK 198
+ + A ++Q++++ + ++
Sbjct: 498 KLQATT--FAEAAKIQKRLRADPIISA 522
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 29.8 bits (68), Expect = 2.2
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 256 GLRTPSR--GLLLF-GPPGNGKTMLARAVA 282
GL+ P+R G LF GP G GKT LA+ +A
Sbjct: 580 GLKDPNRPIGSFLFLGPTGVGKTELAKTLA 609
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 2.6
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 178 EKW--ERAQRLQEKMKNNLKMAKE 199
KW E+ +RLQE + M +E
Sbjct: 88 RKWREEQRKRLQELDAASKVMEQE 111
Score = 28.2 bits (62), Expect = 4.7
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 125 QKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNCYYGSGEKWERAQ 184
Q++ ++ D SK ++ + KD+ E+ ++ +++K N +K Q
Sbjct: 94 QRKRLQEL-DAASKVMEQEWREKAKKDLE-EWNQRQSEQVEKNKINN---RIADKAFYQQ 148
Query: 185 R 185
Sbjct: 149 P 149
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex,
nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis,
ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Length = 83
Score = 27.7 bits (61), Expect = 2.6
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 12/75 (16%)
Query: 130 RKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNCYYGSGEKWERAQRLQEK 189
A A+K D+E GN + AI YKK I L + + R
Sbjct: 17 EMARKYAINAVKADKE--GNAEEAITNYKKAIEVLAQLV----------SLYRDGSTAAI 64
Query: 190 MKNNLKMAKERLSIL 204
+ + K R+ +L
Sbjct: 65 YEQMINEYKRRIEVL 79
>2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding,
hydrolase; 2.86A {Staphylococcus hyicus}
Length = 431
Score = 29.7 bits (65), Expect = 2.7
Identities = 28/297 (9%), Positives = 69/297 (23%), Gaps = 27/297 (9%)
Query: 4 KSNKTTTGKSSKKEDNVSNKQLCFKYSIHERNFHVFSYPIILFFDIFRYILYLIIIFFKY 63
K N T K + + + ++ P + ++ + Y
Sbjct: 16 KENTTAQNKFTSQASDKKPTVKAAPEAVQNPENPKNKDPFVFVHGFTGFVGEVAAKGENY 75
Query: 64 FYKCMTKLKLSSTFFSVIKKVRGNSVVLATAPTPNTSSVIITECKDNVEMASTVGDTLLA 123
+ L+ +R A +S + + D A
Sbjct: 76 WGGTKANLR---------NHLRKAGYETYEASVSALASNHERAVELYYYLKGGRVDYGAA 126
Query: 124 TQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKG------ISELDKGIAVNCYYGSG 177
+++ + + + + + + G+ I G L G Y
Sbjct: 127 HSEKYGHERYGKTYEGV-LKDWKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQ 185
Query: 178 EKWERAQRLQEKMKNNLKMAKERLSILSVD-----SKLAQVVLDEILEGGSPVQWQDIAG 232
++ + N + SI ++ + + + + + ++
Sbjct: 186 HGGIISELFKGGQDNMVT------SITTIATPHNGTHASDDIGNTPTIRNILYSFAQMSS 239
Query: 233 QEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATF 289
+ E T ++ G L R A N
Sbjct: 240 HLGTIDFGMDHWGFKRKDGESLTDYNKRIAESKIWDSEDTGLYDLTREGAEKINQKT 296
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 29.5 bits (66), Expect = 2.8
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 265 LLFGPPGNGKTMLARAVATACNATF--------FSISAA-SLTSKYVGQGEKLVRALFAM 315
L+ GPPG GKT+ + + + S A L +K G K+VR L A
Sbjct: 379 LIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVR-LTAK 437
Query: 316 ARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEF 351
+RE S + + +++ +GE + +LK E
Sbjct: 438 SREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEV 473
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A
{Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB:
1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P
Length = 479
Score = 29.5 bits (65), Expect = 2.8
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 123 ATQKEHHRKAFDLISKALKID-EENTGNKDVAIEFY 157
A Q E + + S + E TGNK I F
Sbjct: 99 AEQIEQAKLSLQSWSDVANLTFTEVTGNKSANITFG 134
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 29.5 bits (66), Expect = 3.0
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 18/111 (16%)
Query: 109 DNVEMASTVGDTLLATQKEHHRKAFDLISKALKIDEENT----------------GNKDV 152
++ E+ G T L + +A KAL+ +N
Sbjct: 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQN 193
Query: 153 AIEFYKKGISELDKGIAVNCYYGSGEKWERAQRLQEKMKNNLKMAKERLSI 203
AI+ ++ I L+ K + + E+ K+ +E L
Sbjct: 194 AIDPLRQAI-RLNPDNQ-YLKVLLALKLHKMREEGEEEGEGEKLVEEALEK 242
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.5 bits (63), Expect = 3.3
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSIS 293
+R + L GPPG GKT L + ++ +
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 29.1 bits (65), Expect = 3.5
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 33 ERNFHVFSYPIILFFDIFRYILYLIIIFFKYFYKCMTKLKLSSTFFSVIKKVRGNSVVLA 92
R+ S + +F I + ++IIFF YF + + + K++ + L
Sbjct: 192 SRDSTTRSNILCMF--ILGFFGPILIIFFCYF-------NIVMSVSNHEKEMAAMAKRLN 242
Query: 93 TAPTPNTSSVIITECK 108
+ E +
Sbjct: 243 AKELRKAQAGANAEMR 258
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 28.5 bits (63), Expect = 3.5
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 255 TGLRTPSRGLLLFGPPGNGKTMLARAVATACNATF 289
+ +L G G+GK+ +A VA +A F
Sbjct: 2 STTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAF 36
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 29.2 bits (65), Expect = 3.5
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 252 ELFTGLRTPSRGLLLFGPPGNGKTMLARAV 281
+ ++ + + GP G G T L + +
Sbjct: 36 IVMKAIKEKKHHVTINGPAGTGATTLTKFI 65
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA
helicase, acetyltransferase, GCN5 acetyltransferase;
HET: ACO ADP; 2.35A {Escherichia coli K12}
Length = 671
Score = 29.2 bits (65), Expect = 4.1
Identities = 11/80 (13%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 257 LRTPSRGLLLFGPPGNGKTMLARAVATACNATFF----SISAASLTSKYVGQGEKLVRAL 312
+ P + G GK+ LA + + + ++ + +++ G+ + +
Sbjct: 188 MTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDVLAQFAGEKFRFIAPD 247
Query: 313 FAMARELQPSIIFIDEVDSV 332
+A + Q + +DE ++
Sbjct: 248 ALLASDEQADWLVVDEAAAI 267
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 28.8 bits (65), Expect = 4.5
Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 27/115 (23%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P + K+ + + + PG GKT +A+A+
Sbjct: 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHS-----------PSPGTGKTTVAKALCH 70
Query: 284 ACNATFFSISAASLTSKYVGQGEKL--VRA---LFAMARELQPS--IIFIDEVDS 331
NA ++ + K+ VR FA A +I IDE D
Sbjct: 71 DVNADMMFVNGSD---------CKIDFVRGPLTNFASAASFDGRQKVIVIDEFDR 116
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 27.4 bits (61), Expect = 5.0
Identities = 6/38 (15%), Positives = 18/38 (47%)
Query: 453 DQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQY 490
DQ++ ++ +S+ +S+ + + R + I +
Sbjct: 64 DQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAF 101
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site,
structura genomics, PSI-2, protein structu initiative;
HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Length = 343
Score = 28.7 bits (65), Expect = 5.0
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 320 QPSIIFIDEVDSVLSERKEGEHEASRR 346
+ +E + + + E E E + R
Sbjct: 313 RIGAPTREETEEAMRQWLERESEPALR 339
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 28.1 bits (63), Expect = 5.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 258 RTPSRGLL-LFGPPGNGKTMLARAVATACNATFFSISAASL 297
R P R L+ L G PG+GK+ L+ +A A +A +
Sbjct: 18 RQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPM 58
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 28.3 bits (63), Expect = 5.3
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 21/87 (24%)
Query: 122 LATQKEHHRKAFDLISKALKIDE----ENTGNKDVAIEFYKKGISELDKGIAVNCYYGSG 177
+A QK +A + I+KA K + + + D A Y K A + +
Sbjct: 2 IAAQKI--SEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAK---------AAVAFKNAK 50
Query: 178 ------EKWERAQRLQEKMKNNLKMAK 198
+ + + ++ AK
Sbjct: 51 QLEQAKDAYLQEAEAHANNRSLFHAAK 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 28.4 bits (63), Expect = 5.4
Identities = 10/82 (12%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 122 LATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISEL----DKGIAVNCY---- 173
+ T + R+ + + +I E + + AI+ Y+ ++ C+
Sbjct: 106 IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165
Query: 174 --YGSGEKWERAQRLQEKMKNN 193
++ A + K+ +
Sbjct: 166 DLKALDGQYIEASDIYSKLIKS 187
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 28.4 bits (64), Expect = 5.5
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 32/100 (32%)
Query: 129 HRKAFDLISKALKIDEE-------------------NTGNKDVAIEFYKKGIS---EL-D 165
+ A + + L+I E G + A E YK+ ++ EL +
Sbjct: 239 FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298
Query: 166 K-GIAVNCY-----YGSGEKWERAQRLQEKMKNNLKMAKE 199
+ A +CY Y ++ A + L +A+E
Sbjct: 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRH---LAIAQE 335
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase;
HET: HGX FLC; 2.00A {Pseudomonas putida}
Length = 290
Score = 28.5 bits (63), Expect = 5.7
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 306 EKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL 358
+ LVR L E++ + E + + +++ EF+L D L
Sbjct: 33 QSLVRHLHDFVSEVELT---EQEWFEGIRFLTATGQKCDGKVRQEFILLSDTL 82
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 28.4 bits (63), Expect = 5.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 264 LLLFGPPGNGKTMLARAVATAC 285
+ LFGP GKT +A A+A
Sbjct: 107 IWLFGPATTGKTNIAEAIAHTV 128
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR
{Thermoplasma acidophilum} PDB: 2k22_A
Length = 90
Score = 26.6 bits (59), Expect = 6.0
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 381 AVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELD 421
A LR +K+ T LLE+L ++G+ ++ D
Sbjct: 8 ATLRPITKKKEETFNGISKISELLERLKVEYGSEFTKQMYD 48
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 28.4 bits (62), Expect = 6.0
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 245 ILPSLRPELFTGLRTPSR--GLLLFGPPGNGKTMLARAVATACNATFFSISAASL 297
L EL G + LL G PG+GKT L A+ I +
Sbjct: 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 27.9 bits (62), Expect = 6.1
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 215 LDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLF-GPPGNG 273
+I EGG W+ I Q + Q + + L +L+ L TP + L+F GP G
Sbjct: 18 CSKIDEGGD---WRPIV-QFLRYQQIEFITFLGALKSFL---KGTPKKNCLVFCGPANTG 70
Query: 274 KTMLARAVATACNATFFS 291
K+ + S
Sbjct: 71 KSYFGMSFIHFIQGAVIS 88
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 27.9 bits (63), Expect = 6.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 261 SRGLLLFGPPGNGKTMLARAVATACNATFF 290
+ +L G PG+GK+ + R +A A
Sbjct: 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLL 31
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 28.1 bits (63), Expect = 6.4
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 18/62 (29%)
Query: 224 PVQWQDIAGQEVAKQALHEMV---ILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARA 280
P DI G + L ++ +P + ++ G PG GKT
Sbjct: 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHM---------------IISGMPGIGKTTSVHC 61
Query: 281 VA 282
+A
Sbjct: 62 LA 63
>3iis_M PCP, peridinin-chlorophyll A-binding protein 1, chloro; alpha
helical, light harvesting protein, photosynthesis, CAR
dinoflagellates; HET: CLA PID J7Z; 1.40A {Amphidinium
carterae} PDB: 2x20_M* 2x1z_M* 2x21_M* 3iiu_M*
Length = 151
Score = 27.5 bits (60), Expect = 6.5
Identities = 15/68 (22%), Positives = 24/68 (35%)
Query: 72 KLSSTFFSVIKKVRGNSVVLATAPTPNTSSVIITECKDNVEMASTVGDTLLATQKEHHRK 131
KL ++ K+V N+ + AP + + M + LL E H K
Sbjct: 10 KLGDASYAFAKEVDWNNGIFLQAPGKLQPLEALKAIDKMIVMGAAADPKLLKAAAEAHHK 69
Query: 132 AFDLISKA 139
A +S
Sbjct: 70 AIGSVSGP 77
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 28.3 bits (64), Expect = 6.7
Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 39/121 (32%)
Query: 140 LKIDEENTGNKDVAIEFYK------KGI--SELDKGIAVNCYYGSGEKWERAQRLQEKMK 191
+ E G V + + I ++L GI V+ +++ M
Sbjct: 181 KSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDK-----------EKVHPGMP 229
Query: 192 NNLKMAKERLSILSVDSKL--------AQVVLDEILEGGSPVQWQDIAGQEVAKQALHEM 243
+ +K AK I +D+ L + ++ P Q QE + L EM
Sbjct: 230 DVVKDAK----IALLDAPLEIKKPEFDTNLRIE------DPSMIQKFLAQE--ENMLREM 277
Query: 244 V 244
V
Sbjct: 278 V 278
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 28.0 bits (63), Expect = 7.1
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 35/107 (32%)
Query: 129 HRKAFDLISKALKIDEE-------------------NTGNKDVAIEFYKK---------- 159
+ KA D K L I +E GN D A+ F +K
Sbjct: 283 YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 342
Query: 160 --GISELDKGIAVNCYYGSGEKWERAQRLQEK---MKNNLKMAKERL 201
G ++ + G + + + + ++L + +L
Sbjct: 343 KSGELTARLNLS-DLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKL 388
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 27.6 bits (61), Expect = 7.2
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFS 291
++ GP G GK+ + +A + + +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYI 32
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 28.3 bits (64), Expect = 7.5
Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 35/118 (29%)
Query: 140 LKIDEENTGNKDVAIEFYKK---GI--SELDKGIAVNCYYGSGEKWERAQRLQEKMKNNL 194
L +D + +K + I+ K + S G+A + E+
Sbjct: 187 LSLDRNDLDDKLIGIK--KIPGGAMEESLFINGVAFKK--------TFSYAGFEQQPKKF 236
Query: 195 KMAKERLSILSVDSKL--------AQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMV 244
K ILS++ +L A+V ++ +Q I E Q + E +
Sbjct: 237 NNPK----ILSLNVELELKAEKDNAEVRVE------HVEDYQAIVDAE--WQLIFEKL 282
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 27.9 bits (62), Expect = 7.9
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 18/55 (32%)
Query: 125 QKEHHRKAFDLISKALKIDEE------------------NTGNKDVAIEFYKKGI 161
+ + A + KA K+ E G A +F ++G+
Sbjct: 234 RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 28.2 bits (62), Expect = 8.0
Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 16/106 (15%)
Query: 240 LHEMVILPSLRPELFTGLRTPSRG--LLLFGPPGNGKT--------MLARAVATACNATF 289
+M L +LR L G S +L+ G PG GKT +
Sbjct: 138 YSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAA 197
Query: 290 FSISAASLTSKYVGQGEKLVRALFAM------ARELQPSIIFIDEV 329
I + S + + VR + + Q +FIDE
Sbjct: 198 EMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEG 243
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 27.9 bits (63), Expect = 8.1
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 39/121 (32%)
Query: 140 LKIDEENTGNKDVAIEFYK------KGI--SELDKGIAVNCYYGSGEKWERAQRLQEKMK 191
++ E V ++ + I ++L GI V+ + + M
Sbjct: 190 TQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDK-----------EVVHPGMP 238
Query: 192 NNLKMAKERLSILSVDSKL--------AQVVLDEILEGGSPVQWQDIAGQEVAKQALHEM 243
L+ AK I +D+ L A++ ++ P Q Q +E + + E
Sbjct: 239 KRLENAK----IALIDASLEVEKPELDAEIRIN------DPTQMQKFLDEE--ENLIKEK 286
Query: 244 V 244
V
Sbjct: 287 V 287
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 28.1 bits (63), Expect = 8.1
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLTSK 300
++L G PG GK+ +AVA + + + T K
Sbjct: 207 VVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGK 243
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 27.9 bits (63), Expect = 8.3
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 15/81 (18%)
Query: 121 LLATQKEHHRKAFDLISKALKIDEEN-------------TGNKDVAIEFYKKGISELDKG 167
+ Q ++ + A+K + G AIE Y+ + L
Sbjct: 41 SIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL-RLKPD 99
Query: 168 IAVNCYYGSGEKWERAQRLQE 188
+ Y A ++
Sbjct: 100 FI-DGYINLAAALVAAGDMEG 119
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 26.4 bits (59), Expect = 8.3
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 453 DQVIKVDLKSVRNISYRDFLESLKR--------IRRSVSPSSL 487
D+++ VD + ++ + + LK+ I VS +++
Sbjct: 55 DRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYDVSETAV 97
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.3 bits (60), Expect = 8.4
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 264 LLLFGPPGNGKTMLARAVATACN 286
+++ G PG GKT L + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLG 25
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 27.6 bits (62), Expect = 8.4
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 23/69 (33%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPE------LFTGLRTPSRGLLLFGPPGNGKTML 277
P + D+ GQE AL L LF+G R G GKT +
Sbjct: 19 PQTFADVVGQEHVLTALAN-----GLSLGRIHHAYLFSGTR------------GVGKTSI 61
Query: 278 ARAVATACN 286
AR +A N
Sbjct: 62 ARLLAKGLN 70
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 28.1 bits (63), Expect = 8.7
Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 23/78 (29%)
Query: 198 KERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGL 257
E + VD L LD++ + WQ +A A AL +
Sbjct: 124 NEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVA----AAVALTRRI------------- 166
Query: 258 RTPSRGLLLFGPPGNGKT 275
++ G PG GKT
Sbjct: 167 ------SVISGGPGTGKT 178
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 28.3 bits (63), Expect = 8.7
Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 19/149 (12%)
Query: 150 KDVAIEFYKKGISELDKGIAVNCYYGSGEKWERAQRLQEKMKNNLKMAKE--RLSILSVD 207
+ G+ + + +++RA L + + N A ++L
Sbjct: 23 SYIMDHMISNGVLSVIE---EEKVKSQATQYQRAAALIKMILNKDNCAYISFYNALLHEG 79
Query: 208 SKLAQVVLDEILEGGSPVQWQDIAGQEVAK-QALHEMVILPSL------RPELFTGLRT- 259
K +L L S +D G + + + +P R +L ++
Sbjct: 80 YKDLAALLQSGLPLVSSSSGKDTDGGITSFVRTVLCEGGVPQRPVIFVTRKKLVHAIQQK 139
Query: 260 ------PSRGLLLFGPPGNGKTMLARAVA 282
+ ++G G GK++LA
Sbjct: 140 LWKLNGEPGWVTIYGMAGCGKSVLAAEAV 168
>1ppr_M PCP, peridinin-chlorophyll protein; light harvesting protein,
photosynthesis, carotenoids, dinoflagellates,
light-harvesting protein; HET: CLA PID DGD; 2.00A
{Amphidinium carterae} SCOP: a.131.1.1 a.131.1.1
Length = 312
Score = 27.5 bits (60), Expect = 9.1
Identities = 16/68 (23%), Positives = 24/68 (35%)
Query: 72 KLSSTFFSVIKKVRGNSVVLATAPTPNTSSVIITECKDNVEMASTVGDTLLATQKEHHRK 131
KL ++ K+V N+ + AP + + M + LL E H K
Sbjct: 9 KLGDASYAFAKEVDWNNGIFLQAPGKLQPLEALKAIDKMIVMGAAADPKLLKAAAEAHHK 68
Query: 132 AFDLISKA 139
A IS
Sbjct: 69 AIGSISGP 76
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 27.1 bits (61), Expect = 9.2
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 14/71 (19%)
Query: 129 HRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNCYYGSGEKWERAQRLQE 188
+ KA D K L I +E + G N Y G ++A E
Sbjct: 105 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLG----------NAYTALGN-HDQAMHFAE 153
Query: 189 KMKNNLKMAKE 199
K +L++++E
Sbjct: 154 K---HLEISRE 161
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 27.9 bits (63), Expect = 9.4
Identities = 21/91 (23%), Positives = 29/91 (31%), Gaps = 31/91 (34%)
Query: 162 SELDKGIAVNCYYGSGEKWERAQRLQEKMKNNLKMAKERLSILSVDSKL--------AQV 213
S L G A+NC GS + M + AK I +D L QV
Sbjct: 202 SMLINGYALNCVVGS-----------QGMPKRIVNAK----IACLDFSLQKTKMKLGVQV 246
Query: 214 VLDEILEGGSPVQWQDIAGQEVAKQALHEMV 244
V+ P + I +E E +
Sbjct: 247 VIT------DPEKLDQIRQRE--SDITKERI 269
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 27.9 bits (62), Expect = 9.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 264 LLLFGPPGNGKTMLARAVA 282
+L +GPPG GKT A+
Sbjct: 61 MLFYGPPGTGKTSTILALT 79
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 27.5 bits (61), Expect = 9.9
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 252 ELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC 285
+LF + + + + G G GKT ++ A A
Sbjct: 5 DLFKFNKGKTTFVFIGGKGGVGKTTISAATALWM 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.373
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,451,773
Number of extensions: 458754
Number of successful extensions: 2002
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1872
Number of HSP's successfully gapped: 221
Length of query: 502
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 404
Effective length of database: 3,965,535
Effective search space: 1602076140
Effective search space used: 1602076140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.8 bits)