RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2637
(502 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 245 bits (627), Expect = 5e-79
Identities = 87/260 (33%), Positives = 138/260 (53%), Gaps = 22/260 (8%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGL-RTPSRGLLLFGPPGNGKTMLARAVAT 283
+ D+AG + AK+ + E+V P F L +G+L+ GPPG GKT+LA+A+A
Sbjct: 9 TTFADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSER---KEGE 340
FF+IS + +VG G VR +F A++ P IIFIDE+D+V +R G
Sbjct: 68 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG 127
Query: 341 HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSK 398
H+ + + L+E DG N ++V+ ATNRP LD A+LR RF +++ V LPD +
Sbjct: 128 HDEREQTLNQMLVEMDGFEGNE--GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 185
Query: 399 TRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKV 458
R+ +L+ + + ++ +A+ T G+SG+DL NL +AAL R
Sbjct: 186 GREQILKVHMRRV-PLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG--------- 235
Query: 459 DLKSVRNISYRDFLESLKRI 478
+ R +S +F ++ +I
Sbjct: 236 ---NKRVVSMVEFEKAKDKI 252
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 244 bits (625), Expect = 8e-79
Identities = 89/243 (36%), Positives = 130/243 (53%), Gaps = 11/243 (4%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGL-RTPSRGLLLFGPPGNGKTMLARAVAT 283
V ++D+AG E AK+ L E+V P F + +G+LL GPPG GKT LARAVA
Sbjct: 6 VTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 64
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSER---KEGE 340
F + S + +VG G VR LF A+ P I+FIDE+D+V +R G
Sbjct: 65 EARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 124
Query: 341 HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSK 398
++ + + L+E DG ++ ++VM ATNRP LD A+LR RF ++I + PD K
Sbjct: 125 NDEREQTLNQLLVEMDGFEKDT--AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 182
Query: 399 TRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKV 458
R+ +L + ++L +AK T G+ G+DL NL +AAL RE ++
Sbjct: 183 GREQILRIHA-RGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE-GRRKITMK 240
Query: 459 DLK 461
DL+
Sbjct: 241 DLE 243
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 198 bits (505), Expect = 7e-61
Identities = 94/264 (35%), Positives = 146/264 (55%), Gaps = 15/264 (5%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGL-RTPSRGLLLFGPPGNGKTMLARAVAT 283
V W+DI G E K+ L E+V P P+ F TPS+G+L +GPPG GKT+LA+A+A
Sbjct: 4 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 63
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSER---KEGE 340
C A F SI L + + G+ E VR +F AR+ P ++F DE+DS+ R
Sbjct: 64 ECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 123
Query: 341 HEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSK 398
A+ R+ + L E DG+ + + ++GATNRP +D A+LR R + IY+ LPD K
Sbjct: 124 GGAADRVINQILTEMDGMSTKK--NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 181
Query: 399 TRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKV 458
+R ++L+ L K ++L+ +AK+T G+SG+DLT + + A IRE + + I+
Sbjct: 182 SRVAILKANLRKS-PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE-SIESEIRR 239
Query: 459 DL-----KSVRNISYRDFLESLKR 477
+ S + D + ++R
Sbjct: 240 ERERQTNPSAMEVEEDDPVPEIRR 263
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 172 bits (435), Expect = 7e-51
Identities = 88/261 (33%), Positives = 136/261 (52%), Gaps = 11/261 (4%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGL-RTPSRGLLLFGPPGNGKTMLARAVAT 283
V + D+ G + EMV LP P LF + P RG+LL+GPPG GKT++ARAVA
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA 343
A FF I+ + SK G+ E +R F A + P+IIFIDE+D++ +R++ E
Sbjct: 61 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 120
Query: 344 SRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRIYVTLPDSKTRK 401
RR+ ++ L D ++VM ATNRP +D A+ R RF + + + +PD+ R
Sbjct: 121 ERRIVSQLLTLMD--GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 178
Query: 402 SLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIREL-----NADQVI 456
+L+ +L+ VA T G+ G+DL L +AAL IR+ D+ I
Sbjct: 179 EILQIHTKNMKLADDV-DLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 237
Query: 457 KVDLKSVRNISYRDFLESLKR 477
++ + ++ DF +L +
Sbjct: 238 DAEVMNSLAVTMDDFRWALSQ 258
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 136 bits (343), Expect = 7e-37
Identities = 34/229 (14%), Positives = 69/229 (30%), Gaps = 36/229 (15%)
Query: 233 QEVAKQALHEMVI-LPSLRPELFTGL--RTPSRGLLLFGPPGNGKTMLARAVATACNA-- 287
++ + L ++ L P + R S +++ G +GKT L A+ A
Sbjct: 92 KQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKD 151
Query: 288 TFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE-GEHEASRR 346
+ ++ S Y V + Q +I ID + +V+ R
Sbjct: 152 KYATVRFGEPLSGYNTDFNVFVDDIARAML--QHRVIVIDSLKNVIGAAGGNTTSGGISR 209
Query: 347 LKTEFLLEFDGLHSNSEHRLLVMGATNR---PQELDEAVLR--RFSKRIYVTLPDSKTRK 401
+ L + + ++ +V+ + N ++ E V R + V D
Sbjct: 210 GAFDLLSDIGAMAASR--GCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEW 267
Query: 402 SLLEKLLNKHGNPLSQLELDAVAKLTEGY--SGSDLTNLAKDAALGPIR 448
+L + EG L + ++ I
Sbjct: 268 QVL-------------------TRTGEGLQRLTHTLQTSYGEHSVLTIH 297
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 118 bits (297), Expect = 3e-31
Identities = 60/269 (22%), Positives = 109/269 (40%), Gaps = 35/269 (13%)
Query: 210 LAQVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGP 269
A +++ I++ G PV + L + +L + RTP +LL GP
Sbjct: 3 YASYIMNGIIKWGDPV-----------TRVLDDGELL---VQQTKNSDRTPLVSVLLEGP 48
Query: 270 PGNGKTMLARAVATACNATFFSISAASLTSKYVGQGE-KLVRALFAMARELQPSIIFIDE 328
P +GKT LA +A N F I + + + + ++ +F A + Q S + +D+
Sbjct: 49 PHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDD 108
Query: 329 VDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR-RFS 387
++ +L G ++ L+ +L + L++G T+R L E + FS
Sbjct: 109 IERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKL--LIIGTTSRKDVLQEMEMLNAFS 166
Query: 388 KRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPI 447
I+V P+ T + LLE L + E +A+ +G I
Sbjct: 167 TTIHV--PNIATGEQLLEAL--ELLGNFKDKERTTIAQQVKGKKVW-----------IGI 211
Query: 448 RELNADQVIKVDLKSVRNISYRDFLESLK 476
++L +I++ L+ R FL L+
Sbjct: 212 KKLL--MLIEMSLQMDPEYRVRKFLALLR 238
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 106 bits (265), Expect = 9e-26
Identities = 31/227 (13%), Positives = 61/227 (26%), Gaps = 37/227 (16%)
Query: 262 RGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKY-VGQGEKLVRALF------A 314
R L GP +GKT LA A+ C +++ + +G +F
Sbjct: 155 RYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTG 214
Query: 315 MARELQPSIIFIDEVDSVLSERKEGEHEA-SRRLKTEFLLEFDGLHSNSEHRLLVMGATN 373
PS I+ +D++ ++ + F + N
Sbjct: 215 GESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPP----------GIVTMN 264
Query: 374 RPQELDEAVLR--RFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYS 431
E RF K+I D LE+ + Q + + L
Sbjct: 265 ---EYSVPKTLQARFVKQIDFRPKDYLKHC--LERSEFLLEKRIIQSGIALLLMLIWYRP 319
Query: 432 GSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRI 478
++ + + L+ + S + + +
Sbjct: 320 VAEFAQSIQSRIVEWKERLDKE------------FSLSVYQKMKFNV 354
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 98.1 bits (243), Expect = 1e-23
Identities = 33/285 (11%), Positives = 67/285 (23%), Gaps = 40/285 (14%)
Query: 225 VQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATA 284
V + D + L E +I E LL G PG+GKT L A+
Sbjct: 4 VNFTDKQFENRLNDNL-EELIQGKKAVE-------SPTAFLLGGQPGSGKTSLRSAIFEE 55
Query: 285 CNATFFSISAASLT---SKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEH 341
I + + + + + +
Sbjct: 56 TQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIE 115
Query: 342 EASRRLKT---------EFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLR--RFSKRI 390
R E +G R + + R + +
Sbjct: 116 GTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQ 175
Query: 391 YVTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIREL 450
+ + L H L + + YS + +++ L
Sbjct: 176 AHDIVVKNLPTN----LETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELN- 230
Query: 451 NADQVIKVDLKSVRNISYRDFLESLKRIRRSVSPSSLIQYEAWNR 495
R +S ++ +L+RI + + + + +
Sbjct: 231 -------------RKVSGKEIQPTLERIEQKMVLNKHQETPEFKA 262
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 86.0 bits (212), Expect = 3e-19
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 20/203 (9%)
Query: 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLRT--PSRGLLLFGPPGNGKTMLARAVATAC 285
Q I GQ AK+A+ + R +L LR + +L+ GP G GKT +AR +A
Sbjct: 14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 73
Query: 286 NATFFSISAASL--TSKYVGQGEKLVRALFAMARE-----LQPSIIFIDEVDSVLSERKE 338
NA F + A + + ++R L A Q I+FIDE+D + + +
Sbjct: 74 NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY 133
Query: 339 GEHEASRR-LKTEFLLEFDGLHSNSEHRLLVM--------GA--TNRPQELDEAVLRRFS 387
+ SR ++ + L +G +++H ++ GA RP +L + R
Sbjct: 134 SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLP 193
Query: 388 KRIYVTLPDSKTRKSLLEKLLNK 410
R+ +T + + +L +
Sbjct: 194 IRVELTALSAADFERILTEPHAS 216
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 80.8 bits (198), Expect = 6e-18
Identities = 49/258 (18%), Positives = 86/258 (33%), Gaps = 30/258 (11%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P + GQE KQ L + R E P LLLFGPPG GKT LA +A
Sbjct: 5 PKTLDEYIGQERLKQKLRVYLEAAKARKE-------PLEHLLLFGPPGLGKTTLAHVIAH 57
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA 343
S ++ G ++ + I+FIDE+ + + +E + A
Sbjct: 58 ELGVNLRVTSGPAIE--KPGDLAAILANSLE-----EGDILFIDEIHRLSRQAEEHLYPA 110
Query: 344 SRRLKTEFLLEFDG---LHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTR 400
+ ++ R ++GAT RP + +L RF ++ +
Sbjct: 111 MEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEEL 170
Query: 401 KSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDL 460
+ + G +++ + + + G + L +
Sbjct: 171 AQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFAQVAGE--------- 220
Query: 461 KSVRNISYRDFLESLKRI 478
I+ LE+L +
Sbjct: 221 ---EVITRERALEALAAL 235
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 72.3 bits (176), Expect = 5e-15
Identities = 45/258 (17%), Positives = 90/258 (34%), Gaps = 31/258 (12%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P + GQE K+ L + +R E+ +LL GPPG GKT LA +A+
Sbjct: 5 PKSLDEFIGQENVKKKLSLALEAAKMRGEVL-------DHVLLAGPPGLGKTTLAHIIAS 57
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA 343
S V + + A+ + ++FIDE+ + +E + A
Sbjct: 58 ELQTNIHVTSG------PVLVKQGDMAAILTSLE--RGDVLFIDEIHRLNKAVEELLYSA 109
Query: 344 SRRLKTEFLLEFDG---LHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTR 400
+ + ++ ++GAT R L + RF + + K
Sbjct: 110 IEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKEL 169
Query: 401 KSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDL 460
K ++++ + + + +AK + G + L K + +
Sbjct: 170 KEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRD------------MLTV 216
Query: 461 KSVRNISYRDFLESLKRI 478
I+ L++++ +
Sbjct: 217 VKADRINTDIVLKTMEVL 234
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 65.6 bits (158), Expect = 2e-12
Identities = 34/236 (14%), Positives = 63/236 (26%), Gaps = 21/236 (8%)
Query: 260 PSRGLLLFGPPGNGKTMLARAVATAC----NATFFSISAASLTSKYVGQGEKLVRALFAM 315
L G PG GKT+ R + A F I+ + GE
Sbjct: 42 HYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPF 101
Query: 316 ARELQPSIIFIDEVDSVLSERKEG-------EHEASRRLKTEFLLEFDGLHSNSEHRLLV 368
R F+ + L ER + + + F+ R+ +
Sbjct: 102 PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIAL 161
Query: 369 MGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLN------KHGNPLSQLELDA 422
+ + L+ + S K + +L S+ L
Sbjct: 162 VIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQM 221
Query: 423 VAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNISYRDFLESLKRI 478
+A +T + D A+ + ++I+ D +S K +
Sbjct: 222 IADITGAQTPLDTNRGDARLAIDILYRS----AYAAQQNGRKHIAPEDVRKSSKEV 273
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 57.1 bits (136), Expect = 9e-10
Identities = 39/248 (15%), Positives = 74/248 (29%), Gaps = 9/248 (3%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPE---LFTGLR--TPSRGLLLFGPPGNGKTMLA 278
P Q + G + + L + + G R +L+GPPG GKT A
Sbjct: 10 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 69
Query: 279 RAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE 338
VA +A+ + SK + V+ + + +
Sbjct: 70 HLVAQELGYDILEQNASDVRSKTL--LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVI 127
Query: 339 GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSK 398
E + + ++ N R I PD+
Sbjct: 128 IMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDAN 187
Query: 399 TRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKV 458
+ KS L + + L +D + + T G + NL + + +N + + ++
Sbjct: 188 SIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-DIRQVINLLSTISTTT-KTINHENINEI 245
Query: 459 DLKSVRNI 466
+NI
Sbjct: 246 SKAWEKNI 253
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 51.1 bits (121), Expect = 1e-07
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 12/55 (21%)
Query: 229 DIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
I GQE K AL + P + G+L+FG G GK+ RA+A
Sbjct: 8 AIVGQEDMKLALLLTAVDPGIG------------GVLVFGDRGTGKSTAVRALAA 50
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 49.0 bits (116), Expect = 4e-07
Identities = 46/247 (18%), Positives = 84/247 (34%), Gaps = 30/247 (12%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P + D+ GQE AL + L + L G G GKT +AR +A
Sbjct: 8 PQTFADVVGQEHVLTALANGLSLGRI-----------HHAYLFSGTRGVGKTSIARLLAK 56
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQP-SIIFIDEVDSVLSERKEGEHE 342
N + ++ + F E+ S +++ +L +
Sbjct: 57 GLNCETGITATPCGVCDNC---REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 113
Query: 343 ASRRLKTEFLLEFDGLHSNSEHRLL-----------VMGATNRPQELDEAVLRRFSKRIY 391
++ + E L +S + LL + AT PQ+L + + +
Sbjct: 114 GRFKV--YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT-ILSRCLQFH 170
Query: 392 VTLPDSKTRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELN 451
+ D + + LE +LN+ L +A+ EG S D +L A +++
Sbjct: 171 LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIASGDGQVS 229
Query: 452 ADQVIKV 458
V +
Sbjct: 230 TQAVSAM 236
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 49.0 bits (116), Expect = 8e-07
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
Query: 230 IAGQEVAKQALHEMVILPSLRPELFTGLR---TPSRGLLLFGPPGNGKTMLARAVATACN 286
I GQ AK+A+ + R +L LR TP +L+ GP G GKT +AR +A N
Sbjct: 16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPK-NILMIGPTGVGKTEIARRLAKLAN 74
Query: 287 ATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRR 346
A F + A T VG K V ++ + ++ E+ R E A R
Sbjct: 75 APFIKVEATKFT--EVGYVGKEVDSIIRDLTDSAMKLVRQQEIA---KNRARAEDVAEER 129
Query: 347 L 347
+
Sbjct: 130 I 130
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 47.8 bits (112), Expect = 1e-06
Identities = 31/271 (11%), Positives = 67/271 (24%), Gaps = 42/271 (15%)
Query: 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNA 287
++ + +AL + + L + + G G GKT LA+ +
Sbjct: 16 PELRVRRGEAEALARIYLNRLLSGAGLSDVN---MIYGSIGRVGIGKTTLAKFTVKRVSE 72
Query: 288 TFFSISAASLTSKYVGQGEKLVRALFA---------------------------MARELQ 320
+ + + + + E
Sbjct: 73 AAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENH 132
Query: 321 PSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDE 380
++ +DE S+LS + E L N LLV + E
Sbjct: 133 YLLVILDEFQSMLSSPRIAA-EDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMRE 191
Query: 381 AVLRRFSKRIYVTLPDSKTRKSLLEKLLNK-----HGNPLSQLELDAVAKLTEGYSGS-- 433
+ + S+ + + + L L + L+ ++ + G
Sbjct: 192 KIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG 251
Query: 434 ---DLTNLAKDAALGPIRELNADQVIKVDLK 461
K A D + + ++
Sbjct: 252 SARRAIVALKMACEMAEAM-GRDSLSEDLVR 281
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 44.9 bits (105), Expect = 8e-06
Identities = 53/240 (22%), Positives = 87/240 (36%), Gaps = 35/240 (14%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P + DI GQE + L V S+ LL GPPG GKT A A+A
Sbjct: 20 PQRLDDIVGQEHIVKRLKHYVKTGSMPH------------LLFAGPPGVGKTTAALALAR 67
Query: 284 A-----CNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKE 338
F ++A+ V + + A IIF+DE D++ + ++
Sbjct: 68 ELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQ 127
Query: 339 GEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSK 398
L + S++ +L N ++ E + R + + L D
Sbjct: 128 A------------LRRTMEMFSSNVRFILSC---NYSSKIIEPIQSRCAIFRFRPLRDED 172
Query: 399 TRKSLLEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKV 458
K L + G L++ L A+ + EG + L AAL +++ + V V
Sbjct: 173 IAKR-LRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALD--KKITDENVFMV 229
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 43.3 bits (101), Expect = 4e-05
Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 26/153 (16%)
Query: 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLRT------------------PSRGLLLFGP 269
+ GQE AK+ V R L+ +LL GP
Sbjct: 17 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGP 76
Query: 270 PGNGKTMLARAVATACNATFFSISAASLTSKYV------GQGEKLVRALFAMARELQPSI 323
G+GKT++A+ +A + A SLT +L++A ++ Q I
Sbjct: 77 TGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGI 136
Query: 324 IFIDEVDSVL--SERKEGEHEASRRLKTEFLLE 354
+FIDE+D + SE + + S + LL+
Sbjct: 137 VFIDEIDKISRLSENRSITRDVSGEGVQQALLK 169
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 41.3 bits (95), Expect = 1e-04
Identities = 20/183 (10%), Positives = 51/183 (27%), Gaps = 18/183 (9%)
Query: 247 PSLRPELFTG--------LRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLT 298
P + F + L+ G GK+ + + N + +
Sbjct: 7 PKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE 66
Query: 299 SKYVGQGEKLVRALFAMAREL----QPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLE 354
+ + + L +L + + + ++ E + +R+ + F
Sbjct: 67 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANL 126
Query: 355 FDGLHSNSEHRLLVM------GATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLL 408
+ S+ ++++ R L A+ + + S + LL L
Sbjct: 127 LESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYL 186
Query: 409 NKH 411
Sbjct: 187 RVE 189
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 39.8 bits (91), Expect = 4e-04
Identities = 16/85 (18%), Positives = 23/85 (27%), Gaps = 11/85 (12%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P ++ E L + P P LLL+GP G GK A+
Sbjct: 7 PKSLNALSHNEELTNFLKSLSDQPRDLP-----------HLLLYGPNGTGKKTRCMALLE 55
Query: 284 ACNATFFSISAASLTSKYVGQGEKL 308
+ + KL
Sbjct: 56 SIFGPGVYRLKIDVRQFVTASNRKL 80
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 38.5 bits (89), Expect = 0.001
Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 39/247 (15%)
Query: 258 RTPSRGLLLFGPPGNGKTMLARAVA------------TACNATFFSISAASLTSKYVGQG 305
R LL G G GKT +A +A C I + +KY G
Sbjct: 36 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 95
Query: 306 EKLVRALFAMARELQPSIIFIDEVDSVLS--ERKEGEHEASRRLKTEFLLEFDGLHSNSE 363
EK +AL + SI+FIDE+ +++ G+ +A+ +K S+ +
Sbjct: 96 EKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--------SSGK 147
Query: 364 HRLLVMGATNRPQEL------DEAVLRRFSKRIYVTLPDSKTRK---SLLEKLLNKHGNP 414
R++ + QE D A+ RRF K +T + L K H
Sbjct: 148 IRVI---GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVR 204
Query: 415 LSQLELDAVAKLTEGYSGSDLTNLA-KDAALGPIRELNADQVIKVDLKSVRNISYRDFLE 473
+ + A +L Y + + D A+ I E A + K + ++ D
Sbjct: 205 YTAKAVRAAVELAVKY----INDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIES 260
Query: 474 SLKRIRR 480
+ RI R
Sbjct: 261 VVARIAR 267
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 37.4 bits (85), Expect = 0.002
Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 22/146 (15%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P ++ Q+ A L + + P +L +GPPG GKT A+
Sbjct: 8 PKNLDEVTAQDHAVTVLKKTL----------KSANLPH--MLFYGPPGTGKTSTILALTK 55
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA 343
S + +G +VR L S ++++
Sbjct: 56 ELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPY------ 109
Query: 344 SRRLKTEFLLEFDGLHSNSEHRLLVM 369
K L E D + ++++ L
Sbjct: 110 ----KIIILDEADSMTADAQSALRRT 131
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 36.0 bits (82), Expect = 0.009
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 19/121 (15%)
Query: 228 QDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRG---LLLFGPPGNGKTMLARAVATA 284
+ GQ+ A +AL E + + GL + L GP G GKT + ++ A
Sbjct: 22 MLVFGQDKAIEALTEAIKM------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 75
Query: 285 CNATFFSISAASLTSK-YVGQ---------GEKLVRALFAMARELQPSIIFIDEVDSVLS 334
+ + V + G L + +++ +DE++
Sbjct: 76 LGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP 135
Query: 335 E 335
+
Sbjct: 136 D 136
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 93
Score = 33.3 bits (76), Expect = 0.012
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 125 QKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNCYYGSGEKWERAQ 184
Q A ++ +A ++ + A+ Y++GI L + +
Sbjct: 8 QDSDSTAAVAVLKRA--VELDAESRYQQALVCYQEGIDMLLQV----LKGTKESS--KRC 59
Query: 185 RLQEKMKNNLKMAKE 199
L+ K+ + A+
Sbjct: 60 VLRTKISGYMDRAEN 74
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 34.5 bits (78), Expect = 0.015
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSISA 294
LLL G PG+GK+ +A A+A +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHS 37
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 35.0 bits (80), Expect = 0.020
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 31/168 (18%)
Query: 265 LLFGPPGNGKTMLARAVA----------TACNATFFSISAASLTSKYVGQGE---KLVRA 311
+L G PG GKT + +A S+ SL + +GE +L
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 106
Query: 312 LFAMARELQPSIIFIDEVDSVLSERK-EGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMG 370
+ + + I+FIDE+ +V+ K EG +A LK + L ++G
Sbjct: 107 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL----------ARGELRLIG 156
Query: 371 ATNRPQEL-----DEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGN 413
AT E D A+ RRF +YV P + S+L L K+
Sbjct: 157 ATT-LDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEV 202
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1
protein) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 31.7 bits (72), Expect = 0.029
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 122 LATQKEHHRKAFDLISKALKIDEENTGNKDVAIEFYKKGISELDKGIAVNCYYGSGEKWE 181
+++ + +KA DL SKA E+ GN + A++ Y+ + + Y G+K
Sbjct: 1 MSSTSPNLQKAIDLASKA--AQEDKAGNYEEALQLYQHAVQYFLHVVK---YEAQGDK-- 53
Query: 182 RAQRLQEKMKNNLKMAKE 199
Q ++ K L A++
Sbjct: 54 AKQSIRAKCTEYLDRAEK 71
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 33.5 bits (75), Expect = 0.029
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSIS 293
+R ++L G GK+ + R + + + +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 33.2 bits (74), Expect = 0.046
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFF 290
LL+ PG G L A++
Sbjct: 27 LLIQALPGMGDDALIYALSRYLLCQQP 53
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 32.3 bits (72), Expect = 0.072
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFF 290
+L G G+GK+ +A VA +A F
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFL 35
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 31.8 bits (71), Expect = 0.10
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSI 292
+LL G PG GKT L + +A+ + ++
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 31.9 bits (71), Expect = 0.11
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 261 SRGLLLFGPPGNGKTMLARAVA 282
+R + L GPPG GKT L +
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKAS 22
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 32.0 bits (71), Expect = 0.12
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 17/111 (15%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P ++ GQ + + V + P LL +GPPG GKT A+A
Sbjct: 10 PETLDEVYGQNEVITTVRKFV----------DEGKLPH--LLFYGPPGTGKTSTIVALAR 57
Query: 284 ACNA-----TFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEV 329
++A+ V + + A +I +DE
Sbjct: 58 EIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEA 108
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 31.6 bits (70), Expect = 0.13
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 262 RGLLLFGPPGNGKTMLARAVATACNATFFSI 292
R + L GP G GK+ + R +A N F+
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 31.6 bits (70), Expect = 0.14
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGE 306
++ + + G +GK++L +A N T + +G E
Sbjct: 6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDE 52
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 31.4 bits (70), Expect = 0.14
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSIS 293
+++ G P +GK + T S
Sbjct: 6 VMISGAPASGKGTQCELIKTKYQLAHISAG 35
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 31.4 bits (70), Expect = 0.15
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 10/46 (21%)
Query: 246 LPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFS 291
L S PE+ ++ G PG GK+ + + +
Sbjct: 9 LLSPNPEV----------VVAVGFPGAGKSTFIQEHLVSAGYVHVN 44
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 31.3 bits (70), Expect = 0.17
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSI 292
+ G PG+GK ++ + S
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHLSS 37
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 30.7 bits (68), Expect = 0.22
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSIS 293
+ + + G G G T + R +A A F
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTD 34
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 30.7 bits (68), Expect = 0.24
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSI 292
++L GPPG GK A + +A +
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHLAT 33
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 30.7 bits (68), Expect = 0.25
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSIS 293
++L G P GK A+ + S
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQISTG 32
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 30.7 bits (68), Expect = 0.29
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSI 292
+L GPPG GK A +A +
Sbjct: 6 AVLLGPPGAGKGTQAPKLAKNFCVCHLAT 34
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 30.6 bits (68), Expect = 0.29
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSI 292
+LL GPPG GK A +A S
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQIST 31
>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus
aureus [TaxId: 1280]}
Length = 184
Score = 30.6 bits (68), Expect = 0.31
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 62 KYFYKCMTKLKLSSTFFSVIKKVRGNSVVLATAPTPNTSSVIITECKDNVEM 113
+YF + + S F VIK V + + P N+ I D +
Sbjct: 19 QYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQ 70
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 30.9 bits (69), Expect = 0.33
Identities = 40/300 (13%), Positives = 83/300 (27%), Gaps = 66/300 (22%)
Query: 212 QVVLDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPG 271
Q++ ++L G P Q +E + + L S L L G G
Sbjct: 5 QMLDRKLLLGNVPKQ-MTCYIREYHVDRVIKK---------LDEMCDLDSFFLFLHGRAG 54
Query: 272 NGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDS 331
+GK+++A + + I + ++ ++ F + ++ + D++ +
Sbjct: 55 SGKSVIASQA---LSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLN 111
Query: 332 VLSERKEGEHEASRRLKTEFLLEFDGLH------------------------SNSEHRLL 367
S R + + + L +
Sbjct: 112 FPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISN 171
Query: 368 VMGATNRPQELDE-------AVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLEL 420
T E+ L + + V + +E GNP + L
Sbjct: 172 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELS---SGNPAT---L 225
Query: 421 DAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKVDLKSVRNI---SYRDFLESLKR 477
K E + + L +++ L V I SY+ +L+R
Sbjct: 226 MMFFKSCEPKTFEKMAQL-------------NNKLESRGLVGVECITPYSYKSLAMALQR 272
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 30.4 bits (67), Expect = 0.33
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFS 291
++ GP G GK+ + +A + + +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYI 32
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 30.4 bits (67), Expect = 0.35
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFF 290
+L+ G PG GKT +A +A +
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELDGFQH 34
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 30.3 bits (67), Expect = 0.35
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSI 292
+ + G PG+GK + T S
Sbjct: 11 IFVVGGPGSGKGTQCEKIVQKYGYTHLST 39
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 30.3 bits (67), Expect = 0.38
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSI 292
+ + G PG GK + + S
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYSFVHLSA 39
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 30.4 bits (67), Expect = 0.42
Identities = 34/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)
Query: 224 PVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVAT 283
P DI G + L ++ P +++ G PG GKT +A
Sbjct: 11 PQVLSDIVGNKETIDRLQQIA----------KDGNMPH--MIISGMPGIGKTTSVHCLAH 58
Query: 284 ACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEA 343
++ L + + + + A++ ++ +
Sbjct: 59 ELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-- 116
Query: 344 SRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVLRRFSKRIYVTLPDSKTRKSL 403
+ L L+S + A N+ ++ E L+ + + +
Sbjct: 117 ----AQQALRRTMELYS---NSTRFAFACNQSNKIIEP-LQSQCAILRYSKLSDEDVLKR 168
Query: 404 LEKLLNKHGNPLSQLELDAVAKLTEGYSGSDLTNLAKDAALGPIRELNADQVIKV 458
L +++ + L+A+ EG N + G +NAD V K+
Sbjct: 169 LLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAGH-GLVNADNVFKI 221
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 29.9 bits (66), Expect = 0.43
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 262 RGLLLFGPPGNGKTMLARAVATACNATFFSI 292
+ ++ G G+GK+ LARA+A + F
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDS 31
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 30.0 bits (66), Expect = 0.45
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSIS 293
+L G PG+GK+ + R +A A
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTD 33
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 30.0 bits (67), Expect = 0.51
Identities = 17/164 (10%), Positives = 43/164 (26%), Gaps = 25/164 (15%)
Query: 264 LLLFGPPGNGKTMLARAVATACNAT------FFSISAASLTSKYVGQGEKLVRALFAMAR 317
+L+ G + ++ + I + + L
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIG-IDDIRTIKDFLNYSPE 76
Query: 318 ELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQE 377
+ + + +++ FL + + ++ T R
Sbjct: 77 LYTRKYVIVHDC-----------ERMTQQAANAFLKALEEPPEYAV----IVLNTRRWHY 121
Query: 378 LDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQLELD 421
L + R + V + K + L+++ + L LE D
Sbjct: 122 LLPTIKSRVFR---VVVNVPKEFRDLVKEKIGDLWEELPLLERD 162
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 29.7 bits (65), Expect = 0.51
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 260 PSRGLLLF--GPPGNGKTMLARAVATACNATFF 290
++G +F G +GK +ARA+ N
Sbjct: 3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGG 35
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 29.9 bits (66), Expect = 0.54
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSI 292
L+L G PG GK A + A S
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHIST 31
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 30.1 bits (67), Expect = 0.66
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 12/115 (10%)
Query: 37 HVFSYPIILFFDIFRYILYLIIIFFKYFYKCMTKLKLSSTFFSVIKKVRG----NSVVLA 92
+ + I + L K + LK +++ VRG ++
Sbjct: 289 NPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFK 348
Query: 93 TAPTPNTSSVIITECKDNVEMASTVGDTL------LATQKEHHRKAFDLISKALK 141
I + K+N + V D L KE + ++I K +K
Sbjct: 349 NELVNVLD--ICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVK 401
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 29.4 bits (66), Expect = 0.67
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 215 LDEILEGGSPVQWQDIAGQEVAKQALHEMVILPSLRPELFTGLRTPSRG-LLLFGPPGNG 273
+I EGG W+ I Q + Q + + L +L+ L TP + L+ GP G
Sbjct: 13 CSKIDEGGD---WRPIV-QFLRYQQIEFITFLGALKSFL---KGTPKKNCLVFCGPANTG 65
Query: 274 KTMLARAVATACNATFFSI 292
K+ + S
Sbjct: 66 KSYFGMSFIHFIQGAVISF 84
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 29.6 bits (65), Expect = 0.70
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 247 PSLRPELFTGLRTPSRGLLLFGPPGNGKTMLARAVATAC 285
P + + L P G GK+MLA +A
Sbjct: 16 PPPLDYVLPNMV-AGTVGALVSPGGAGKSMLALQLAAQI 53
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 29.5 bits (65), Expect = 0.71
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSI 292
++L G PG GK A + S
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYGTPHIST 31
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 29.3 bits (64), Expect = 0.82
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFF 290
+ L G G GKT ++ A+
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCHGI 48
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 29.1 bits (64), Expect = 0.83
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 262 RGLLLFGPPGNGKTMLARAVATACNATF-FSISA 294
R ++L GP G GK+ L + + ++ F FS+S
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSH 34
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.9 bits (63), Expect = 0.91
Identities = 22/148 (14%), Positives = 42/148 (28%), Gaps = 6/148 (4%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSI 323
+L G PG+GK+ AR + S + + +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64
Query: 324 IFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNRPQELDEAVL 383
+ + +G + L E L ++ ++ EL +
Sbjct: 65 FDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL----V 120
Query: 384 RRFSKRIYVTLPDSKTRKSL--LEKLLN 409
+R SKR +P R + + L
Sbjct: 121 KRNSKRGTKAVPIDVLRSMYKSMREYLG 148
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 29.2 bits (64), Expect = 0.97
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSI 292
+ + G PG GK + T S
Sbjct: 4 VFVLGGPGAGKGTQCARIVEKYGYTHLSA 32
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 29.2 bits (64), Expect = 0.98
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSI 292
+ + G PG+GK + S
Sbjct: 9 VFVLGGPGSGKGTQCANIVRDFGWVHLSA 37
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 29.4 bits (64), Expect = 0.98
Identities = 12/64 (18%), Positives = 17/64 (26%)
Query: 260 PSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMAREL 319
+FG GKT + +A C +G L A+A
Sbjct: 22 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERY 81
Query: 320 QPSI 323
S
Sbjct: 82 GLSG 85
>d1pprm2 a.131.1.1 (M:157-312) Peridinin-chlorophyll protein
{Dinoflagellate (Amphidinium carterae) [TaxId: 2961]}
Length = 156
Score = 28.4 bits (63), Expect = 1.1
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 72 KLSSTFFSVIKKV-RGNSVVLATAPTPNTSSVIITECKDNVEMASTVGDTLLATQKEHHR 130
+LS + +K++ + V + P + + K + M + L E H
Sbjct: 16 QLSEASYPFLKEIDWLSDVYMKPLPGVSAQQSLKAIDK-MIVMGAQADGNALKAAAEAHH 74
Query: 131 KAFDLIS 137
KA I
Sbjct: 75 KAIGSID 81
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 28.4 bits (62), Expect = 1.2
Identities = 13/94 (13%), Positives = 24/94 (25%), Gaps = 1/94 (1%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSI 323
L G GKT L + + A A T + + + + + +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDS-YELRKAGAAQT 63
Query: 324 IFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDG 357
I + L E E + +
Sbjct: 64 IVASQQRWALMTETPDEEELDLQFLASRMDTSKL 97
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 28.9 bits (63), Expect = 1.3
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 268 GPPGNGKTMLARAVATACNATFFS 291
GP G GK L +A+A A
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLLD 33
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.8 bits (63), Expect = 1.4
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 252 ELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACN 286
+ G R +++ G GK+ R A
Sbjct: 27 DKTLGAR-GGEVIMVTSGSGMGKSTFVRQQALQWG 60
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 28.8 bits (64), Expect = 1.4
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 266 LFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIF 325
GP G GK+ L R +A T + E+ V + + L P +
Sbjct: 31 FVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV-GMVFQSYALYPHLSV 89
Query: 326 IDEVDSVLSERKEGEHEASRRLK 348
+ + L + ++R+
Sbjct: 90 AENMSFGLKLAGAKKEVINQRVN 112
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 28.4 bits (63), Expect = 1.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 262 RGLLLFGPPGNGKTMLARA 280
G+LL G G GK+ A
Sbjct: 16 VGVLLTGRSGIGKSECALD 34
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 28.6 bits (62), Expect = 1.5
Identities = 9/72 (12%), Positives = 19/72 (26%)
Query: 268 GPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIFID 327
G +GKT LA ++ S+ + V + ++
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEW 88
Query: 328 EVDSVLSERKEG 339
+ + K
Sbjct: 89 LTHQLFRQLKAS 100
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 28.4 bits (63), Expect = 1.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 264 LLLFGPPGNGKTMLARAVATACNA 287
L+ PP GKTML + +A +
Sbjct: 46 GLIVAPPKAGKTMLLQNIAQSIAY 69
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 28.0 bits (61), Expect = 1.8
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 261 SRGLLLFGPPGNGKTMLARAVATACNATF-FSISA 294
SR +++ GP G GK+ L + + +F FS+S+
Sbjct: 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSS 35
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 28.4 bits (63), Expect = 1.8
Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 2/109 (1%)
Query: 266 LFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIF 325
L GP G GKT R ++T + ++ + + + ++
Sbjct: 33 LIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 92
Query: 326 IDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHRLLVMGATNR 374
I+ + V E + E E GL + R+
Sbjct: 93 IEYLRFVAGFYASSSSEIEEMV--ERATEIAGLGEKIKDRVSTYSKGMV 139
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 28.3 bits (63), Expect = 1.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 264 LLLFGPPGNGKTMLARAV 281
+L+ G G GK ++AR +
Sbjct: 26 VLITGESGVGKEVVARLI 43
>d1pprm1 a.131.1.1 (M:1-156) Peridinin-chlorophyll protein
{Dinoflagellate (Amphidinium carterae) [TaxId: 2961]}
Length = 156
Score = 28.0 bits (62), Expect = 1.9
Identities = 16/68 (23%), Positives = 24/68 (35%)
Query: 72 KLSSTFFSVIKKVRGNSVVLATAPTPNTSSVIITECKDNVEMASTVGDTLLATQKEHHRK 131
KL ++ K+V N+ + AP + + M + LL E H K
Sbjct: 9 KLGDASYAFAKEVDWNNGIFLQAPGKLQPLEALKAIDKMIVMGAAADPKLLKAAAEAHHK 68
Query: 132 AFDLISKA 139
A IS
Sbjct: 69 AIGSISGP 76
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 28.1 bits (61), Expect = 1.9
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 260 PSRGLLLFGPPGNGKTMLARAVATACN 286
LFG GK+ L +A C
Sbjct: 33 TGSITELFGEFRTGKSQLCHTLAVTCQ 59
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 28.0 bits (61), Expect = 2.1
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 268 GPPGNGKTMLARAVATACNATFFS 291
GP +GK+ +A+ +A T+
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYLD 33
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.0 bits (61), Expect = 2.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 264 LLLFGPPGNGKTMLARAVA 282
+++ G PG GKT L + +
Sbjct: 3 IIITGEPGVGKTTLVKKIV 21
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 28.0 bits (62), Expect = 2.1
Identities = 14/93 (15%), Positives = 23/93 (24%)
Query: 266 LFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIF 325
L G G GKT A+A A I + + +
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96
Query: 326 IDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL 358
+ ++ + E +R F L
Sbjct: 97 TVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL 129
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 27.6 bits (61), Expect = 2.4
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 262 RGLLLFGPPGNGKTMLARA 280
G+L+ G G GK+ A
Sbjct: 16 VGVLITGDSGIGKSETALE 34
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 28.1 bits (62), Expect = 2.4
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 266 LFGPPGNGKTMLARAVATACNATFFSI 292
+ GP G GKT+ +A I
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDSGRI 57
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 27.7 bits (60), Expect = 2.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 264 LLLFGPPGNGKTMLARAVATACNATFFSISA 294
++L GP GK+ + R + FS+SA
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIPNLHFSVSA 35
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus
[TaxId: 11886]}
Length = 80
Score = 25.9 bits (57), Expect = 2.9
Identities = 7/43 (16%), Positives = 12/43 (27%)
Query: 375 PQELDEAVLRRFSKRIYVTLPDSKTRKSLLEKLLNKHGNPLSQ 417
P E R K + + R ++ + P Q
Sbjct: 10 PSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQ 52
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 27.7 bits (60), Expect = 3.0
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 260 PSRGLLLFGPPGNGKTMLARAVATACNA 287
+FG G+GKT LA +A
Sbjct: 35 TQAITEVFGEFGSGKTQLAHTLAVMVQL 62
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 27.2 bits (60), Expect = 3.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 262 RGLLLFGPPGNGKTMLARA 280
G+L+ G G GK+ A
Sbjct: 15 LGVLITGDSGVGKSETALE 33
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 27.7 bits (60), Expect = 3.1
Identities = 10/56 (17%), Positives = 13/56 (23%)
Query: 252 ELFTGLRTPSRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEK 307
+ G G G+GKT + F SK K
Sbjct: 25 SVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPK 80
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 27.5 bits (60), Expect = 3.2
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 261 SRGLLLFGPPGNGKTMLARAVATACNATF-FSISA 294
+ L+L G G G+ + + T F + I
Sbjct: 3 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 37
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 27.2 bits (59), Expect = 3.4
Identities = 7/48 (14%), Positives = 17/48 (35%)
Query: 261 SRGLLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKL 308
++ +++ G PG G T ++ + S S ++
Sbjct: 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEE 48
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 27.2 bits (59), Expect = 3.4
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 264 LLLFGPPGNGKTMLARAVATACNA 287
+++ G P GKT +++ + N
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNF 28
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.7 bits (60), Expect = 3.5
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 265 LLFGPPGNGKTMLARAVATAC 285
L+ G G GKT+ +
Sbjct: 30 LVSGTSGTGKTLFSIQFLYNG 50
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 27.6 bits (61), Expect = 3.6
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 13/113 (11%)
Query: 266 LFGPPGNGKTMLARAVATACNATFFSIS-------------AASLTSKYVGQGEKLVRAL 312
+ GP G+GK+ L + A + Q + ++ +
Sbjct: 35 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 94
Query: 313 FAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLEFDGLHSNSEHR 365
+ L I + + L +K E K +LEF L + +
Sbjct: 95 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 147
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 27.4 bits (61), Expect = 3.7
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 266 LFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQGEKLVRALFAMARELQPSIIF 325
L GP G GKT R +A T I Y+ ++ + +F + P +
Sbjct: 37 LLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA-VWPHMTV 95
Query: 326 IDEVDSVLSERKEGEHEASRRLKTEFLLEFDGL 358
+ + L +K + E +R+ + E +
Sbjct: 96 YENIAFPLKIKKFPKDEIDKRV--RWAAELLQI 126
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 27.2 bits (60), Expect = 4.2
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 15/103 (14%)
Query: 253 LFTGLR------TPSRG--LLLFGPPGNGKTMLARAVATACNATFFSISAASLTSKYVGQ 304
L TGL RG L+ G GKT +A T + ++ YV
Sbjct: 51 LQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVAT-------DTILNQQGQNVICVYVAI 103
Query: 305 GEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRL 347
G+K + + + V + ++ +
Sbjct: 104 GQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYT 146
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.2 bits (59), Expect = 4.9
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 265 LLFGPPGNGKTMLARAVATAC 285
L G G GKT+L
Sbjct: 30 LATGATGTGKTLLVSRFVENA 50
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 26.9 bits (58), Expect = 5.6
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 245 ILPSLRPELFTGLRTPSRGLLLFGPPGNGKT-MLARAVA 282
+L L E +RT LL+ G+GKT +L +A
Sbjct: 8 LLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIA 46
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 26.8 bits (59), Expect = 6.7
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 254 FTGLRTPSRGLLLFGPPGNGKTMLARAVATAC 285
T + LFGP GKT +A A+A
Sbjct: 97 ATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 54
Score = 24.2 bits (53), Expect = 6.7
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 138 KALKIDEENTGNKDVAIEFY-KKGISELDK 166
KAL E G+ ++AIE K G + K
Sbjct: 24 KAL---TEANGDIELAIENMRKSGAIKAAK 50
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 26.6 bits (58), Expect = 7.2
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 266 LFGPPGNGKTMLARAVATACNATFFSI 292
+ GP G GKT R +A + +
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGEL 62
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 26.6 bits (57), Expect = 7.2
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 265 LLFGPPGNGKTMLARAVATAC 285
FG GKT L+ +
Sbjct: 41 EAFGEFRTGKTQLSHTLCVTA 61
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 26.8 bits (58), Expect = 7.6
Identities = 39/261 (14%), Positives = 72/261 (27%), Gaps = 47/261 (18%)
Query: 180 WERAQRLQEKMKNNLKMAKERLSILSVDSKLAQVVLDEILEGGSPVQWQDIAGQEVAKQA 239
R + + + VD L LD++ + WQ +A A A
Sbjct: 108 LNRMWCNERTVARFFNE---VNHAIEVDEALLAQTLDKLFPVSDEINWQKVA----AAVA 160
Query: 240 LHEMVILPSLRPELFTGLRTPSRGLLLFGPPGNGKTMLA----RAVATACNATFFSISAA 295
L R ++ G PG GKT A+ + I A
Sbjct: 161 L-------------------TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 201
Query: 296 SLTSKYVGQ-GEKLVRALFAMARELQPSIIFIDEVDSVLSERKEGEHEASRRLKTEFLLE 354
+ T K + E L +AL + + ++ ++ R L
Sbjct: 202 APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLH 261
Query: 355 FDGLHSNSEHRLLVMGATNRPQELDEAVLRR--FSKRIYVT-----LPDSKTRKSLLEKL 407
D L + A+ + ++ R+ L S ++L +
Sbjct: 262 LDVLVVD--------EASMIDLPMMSRLIDALPDHARVIFLGDRDQLA-SVEAGAVLGDI 312
Query: 408 LNKHGNPLSQLELDAVAKLTE 428
+ +++LT
Sbjct: 313 CAYANAGFTAERARQLSRLTG 333
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 26.4 bits (58), Expect = 8.5
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 266 LFGPPGNGKTMLARAVATACNATFFSI 292
L GP G GKT R +A + I
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQI 60
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 26.2 bits (58), Expect = 9.8
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 10/46 (21%)
Query: 264 LLLFGPPGNGKTMLARAVA--TACNATFFSISAASLTSKYVGQGEK 307
+ LFG G GKT+L + A +S+ + G GE+
Sbjct: 71 IGLFGGAGVGKTVLIMELINNVAKAHGGYSV--------FAGVGER 108
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.373
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,763,517
Number of extensions: 82095
Number of successful extensions: 459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 118
Length of query: 502
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 413
Effective length of database: 1,185,626
Effective search space: 489663538
Effective search space used: 489663538
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)