Query psy2640
Match_columns 613
No_of_seqs 350 out of 2163
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 21:23:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1241 MCM2 Predicted ATPase 100.0 7.9E-83 1.7E-87 713.8 30.9 404 9-502 258-681 (682)
2 KOG0480|consensus 100.0 3.5E-81 7.6E-86 676.0 20.1 392 22-506 329-742 (764)
3 KOG0481|consensus 100.0 1.4E-77 3.1E-82 633.3 23.9 388 11-493 305-717 (729)
4 KOG0478|consensus 100.0 3.5E-77 7.6E-82 649.2 24.3 379 15-497 407-799 (804)
5 KOG0482|consensus 100.0 4E-77 8.8E-82 629.3 22.9 388 4-495 309-712 (721)
6 PTZ00111 DNA replication licen 100.0 5.8E-70 1.3E-74 622.0 31.7 425 9-501 422-910 (915)
7 KOG0477|consensus 100.0 5.4E-71 1.2E-75 593.6 18.3 328 8-399 420-764 (854)
8 KOG0479|consensus 100.0 2E-70 4.4E-75 585.7 22.4 344 10-398 274-648 (818)
9 PF00493 MCM: MCM2/3/5 family 100.0 6.8E-70 1.5E-74 576.4 5.3 310 15-395 2-329 (331)
10 smart00350 MCM minichromosome 100.0 3.4E-54 7.3E-59 480.6 23.3 306 10-389 176-498 (509)
11 KOG0480|consensus 100.0 5.6E-47 1.2E-51 410.6 4.9 483 38-613 58-664 (764)
12 KOG0478|consensus 100.0 1.2E-30 2.6E-35 285.7 8.3 233 358-608 402-742 (804)
13 KOG0477|consensus 100.0 9E-30 2E-34 275.6 4.8 368 147-601 273-767 (854)
14 COG1241 MCM2 Predicted ATPase 100.0 1.8E-29 3.9E-34 284.2 7.2 234 356-609 257-611 (682)
15 PTZ00111 DNA replication licen 99.9 2.4E-26 5.2E-31 264.3 12.0 243 356-610 421-824 (915)
16 KOG0482|consensus 99.9 1.3E-25 2.8E-30 239.0 11.7 245 338-602 292-649 (721)
17 PF00493 MCM: MCM2/3/5 family 99.9 1.1E-27 2.4E-32 254.1 -8.2 220 363-595 2-330 (331)
18 KOG0481|consensus 99.9 1E-24 2.2E-29 232.5 7.6 227 355-601 301-649 (729)
19 smart00350 MCM minichromosome 99.9 7.4E-25 1.6E-29 245.0 -2.2 228 357-596 175-509 (509)
20 KOG0479|consensus 99.8 6.2E-21 1.4E-25 206.2 7.0 229 357-597 273-648 (818)
21 TIGR00368 Mg chelatase-related 99.8 1.1E-18 2.5E-23 193.8 13.8 261 40-393 196-497 (499)
22 PRK09862 putative ATP-dependen 99.7 7.8E-18 1.7E-22 186.6 8.7 199 107-398 280-495 (506)
23 TIGR02031 BchD-ChlD magnesium 99.7 3.4E-16 7.3E-21 178.0 15.1 252 43-397 2-264 (589)
24 TIGR02442 Cob-chelat-sub cobal 99.7 5.8E-16 1.3E-20 177.7 15.8 261 38-396 6-309 (633)
25 TIGR02030 BchI-ChlI magnesium 99.5 5.2E-14 1.1E-18 149.7 14.3 261 38-396 6-314 (337)
26 COG0606 Predicted ATPase with 99.5 1.5E-14 3.2E-19 156.2 9.6 283 10-395 142-485 (490)
27 PRK13407 bchI magnesium chelat 99.5 2.1E-13 4.5E-18 144.9 15.2 252 39-389 11-300 (334)
28 CHL00081 chlI Mg-protoporyphyr 99.5 1.6E-13 3.5E-18 146.1 13.7 266 28-396 13-327 (350)
29 PRK13406 bchD magnesium chelat 99.4 2.3E-12 4.9E-17 146.0 11.5 234 40-397 7-256 (584)
30 PF01078 Mg_chelatase: Magnesi 99.3 8.5E-13 1.8E-17 130.3 3.3 162 38-246 5-199 (206)
31 PRK13531 regulatory ATPase Rav 99.1 1.3E-09 2.7E-14 120.1 16.3 266 33-402 17-294 (498)
32 TIGR00764 lon_rel lon-related 99.0 2.7E-09 5.9E-14 122.1 11.5 186 93-391 180-387 (608)
33 PF07726 AAA_3: ATPase family 98.7 1.6E-08 3.4E-13 92.9 6.5 121 64-240 4-129 (131)
34 COG0714 MoxR-like ATPases [Gen 98.7 1.5E-07 3.2E-12 100.2 13.4 257 37-388 25-289 (329)
35 COG1239 ChlI Mg-chelatase subu 98.6 4E-07 8.6E-12 98.0 13.3 179 107-391 130-318 (423)
36 TIGR02640 gas_vesic_GvpN gas v 98.6 3.9E-07 8.5E-12 94.1 11.8 153 111-388 93-250 (262)
37 TIGR01650 PD_CobS cobaltochela 98.5 4.2E-06 9.2E-11 88.6 16.4 151 64-258 69-228 (327)
38 PRK13765 ATP-dependent proteas 98.4 1.8E-06 3.9E-11 99.2 12.0 184 91-389 188-394 (637)
39 PF07728 AAA_5: AAA domain (dy 98.0 7.6E-06 1.6E-10 75.7 5.1 125 64-240 4-139 (139)
40 PHA02244 ATPase-like protein 97.6 0.00023 5E-09 76.6 9.0 91 113-251 170-262 (383)
41 TIGR02902 spore_lonB ATP-depen 97.3 0.001 2.3E-08 75.5 9.8 149 38-243 67-258 (531)
42 COG1067 LonB Predicted ATP-dep 96.7 0.011 2.3E-07 68.5 11.9 63 328-394 336-398 (647)
43 PRK05342 clpX ATP-dependent pr 96.4 0.012 2.6E-07 64.9 9.4 156 35-221 70-248 (412)
44 CHL00181 cbbX CbbX; Provisiona 96.4 0.022 4.8E-07 59.8 11.0 80 116-249 117-196 (287)
45 PRK00080 ruvB Holliday junctio 96.4 0.056 1.2E-06 57.6 13.8 39 458-499 275-314 (328)
46 PRK10787 DNA-binding ATP-depen 96.3 0.011 2.4E-07 70.2 8.4 166 36-261 322-504 (784)
47 TIGR00635 ruvB Holliday juncti 96.1 0.073 1.6E-06 55.8 13.0 40 459-501 255-295 (305)
48 TIGR02881 spore_V_K stage V sp 96.1 0.11 2.4E-06 53.5 13.8 18 118-135 102-119 (261)
49 TIGR02880 cbbX_cfxQ probable R 96.1 0.054 1.2E-06 56.8 11.5 76 117-246 117-192 (284)
50 PRK11034 clpA ATP-dependent Cl 95.9 0.13 2.9E-06 61.0 14.7 186 206-439 315-509 (758)
51 TIGR02639 ClpA ATP-dependent C 95.8 0.11 2.3E-06 61.6 13.9 181 207-439 312-505 (731)
52 TIGR00382 clpX endopeptidase C 95.4 0.047 1E-06 60.2 8.0 159 35-221 76-256 (413)
53 PF13335 Mg_chelatase_2: Magne 95.1 0.049 1.1E-06 47.9 5.7 67 306-393 28-94 (96)
54 TIGR02031 BchD-ChlD magnesium 95.0 0.034 7.5E-07 64.1 6.0 37 563-599 230-267 (589)
55 TIGR02442 Cob-chelat-sub cobal 94.8 0.035 7.6E-07 64.6 5.1 33 563-595 276-309 (633)
56 smart00763 AAA_PrkA PrkA AAA d 94.6 0.025 5.4E-07 61.0 3.1 82 114-245 229-310 (361)
57 PF07724 AAA_2: AAA domain (Cd 94.3 0.023 5E-07 55.1 1.9 96 115-243 62-171 (171)
58 PF00158 Sigma54_activat: Sigm 94.1 0.029 6.4E-07 54.2 2.2 107 64-215 27-143 (168)
59 PRK05201 hslU ATP-dependent pr 94.1 0.14 3.1E-06 56.4 7.6 155 116-368 243-400 (443)
60 TIGR01817 nifA Nif-specific re 93.5 0.27 5.9E-06 56.0 9.1 108 64-215 224-340 (534)
61 TIGR02030 BchI-ChlI magnesium 93.4 0.28 6E-06 52.8 8.3 35 563-597 281-316 (337)
62 TIGR00368 Mg chelatase-related 93.3 0.075 1.6E-06 60.1 3.9 27 563-589 471-497 (499)
63 PF05496 RuvB_N: Holliday junc 93.0 0.33 7.2E-06 49.2 7.7 129 64-265 55-191 (233)
64 TIGR00390 hslU ATP-dependent p 93.0 0.38 8.2E-06 53.1 8.6 151 120-368 246-398 (441)
65 TIGR02974 phageshock_pspF psp 92.7 0.14 3.1E-06 54.8 4.9 107 64-215 27-143 (329)
66 COG3829 RocR Transcriptional r 92.0 0.22 4.7E-06 56.1 5.3 155 11-215 225-390 (560)
67 TIGR02903 spore_lon_C ATP-depe 91.7 1.3 2.8E-05 51.6 11.4 97 110-262 254-365 (615)
68 PRK09862 putative ATP-dependen 91.1 0.4 8.7E-06 54.3 6.3 29 563-591 464-492 (506)
69 PRK11608 pspF phage shock prot 89.5 0.46 9.9E-06 50.8 4.9 128 64-241 34-170 (326)
70 TIGR03345 VI_ClpV1 type VI sec 89.4 1.8 4E-05 52.2 10.4 95 121-261 668-778 (852)
71 COG2204 AtoC Response regulato 89.0 0.46 9.9E-06 53.1 4.5 65 107-215 221-285 (464)
72 COG3604 FhlA Transcriptional r 88.7 0.4 8.7E-06 53.5 3.7 105 64-215 251-367 (550)
73 PRK15424 propionate catabolism 88.3 0.58 1.3E-05 53.5 4.9 60 112-215 313-372 (538)
74 PF13654 AAA_32: AAA domain; P 87.7 0.31 6.8E-06 55.3 2.2 189 94-391 299-502 (509)
75 cd00009 AAA The AAA+ (ATPases 87.6 0.6 1.3E-05 41.6 3.6 69 118-246 81-149 (151)
76 CHL00081 chlI Mg-protoporyphyr 86.9 4 8.6E-05 44.3 10.0 40 563-602 294-334 (350)
77 TIGR00763 lon ATP-dependent pr 86.9 0.77 1.7E-05 54.9 5.0 166 36-260 320-502 (775)
78 TIGR02639 ClpA ATP-dependent C 85.8 1.4 3E-05 52.4 6.3 100 120-264 552-663 (731)
79 TIGR03346 chaperone_ClpB ATP-d 85.8 5.4 0.00012 48.3 11.5 81 122-246 668-760 (852)
80 PF12774 AAA_6: Hydrolytic ATP 85.3 8.5 0.00018 39.2 11.0 146 118-373 81-226 (231)
81 PRK11034 clpA ATP-dependent Cl 84.9 1.7 3.7E-05 51.7 6.5 98 121-263 557-666 (758)
82 PRK11361 acetoacetate metaboli 84.2 1.2 2.5E-05 49.4 4.6 65 107-215 223-287 (457)
83 PRK05022 anaerobic nitric oxid 84.0 1.4 2.9E-05 50.2 5.0 107 64-215 215-331 (509)
84 PRK11388 DNA-binding transcrip 84.0 1.2 2.6E-05 51.9 4.7 59 113-215 408-466 (638)
85 KOG0745|consensus 81.6 1.4 3.1E-05 48.5 3.7 67 117-214 287-356 (564)
86 TIGR02329 propionate_PrpR prop 81.5 1.7 3.7E-05 49.6 4.6 108 64-215 240-357 (526)
87 PRK10365 transcriptional regul 80.0 2.2 4.8E-05 46.9 4.7 59 113-215 225-283 (441)
88 CHL00095 clpC Clp protease ATP 78.6 5.3 0.00011 48.2 7.7 98 122-264 612-733 (821)
89 TIGR02915 PEP_resp_reg putativ 78.6 2.4 5.3E-05 46.8 4.5 62 111-216 223-284 (445)
90 PRK10820 DNA-binding transcrip 78.1 1.9 4.1E-05 49.2 3.5 58 113-214 290-347 (520)
91 PRK15115 response regulator Gl 77.8 2.6 5.7E-05 46.5 4.5 63 108-214 215-277 (444)
92 PRK15429 formate hydrogenlyase 77.7 2.4 5.3E-05 49.9 4.4 107 64-215 404-520 (686)
93 COG0466 Lon ATP-dependent Lon 77.1 3.1 6.7E-05 48.6 4.8 150 36-246 323-493 (782)
94 PF08784 RPA_C: Replication pr 74.7 8 0.00017 33.9 5.8 49 442-495 50-98 (102)
95 TIGR01818 ntrC nitrogen regula 72.2 4.5 9.7E-05 44.9 4.5 60 112-215 219-278 (463)
96 COG2255 RuvB Holliday junction 71.8 67 0.0015 34.1 12.4 41 456-499 274-315 (332)
97 PF01078 Mg_chelatase: Magnesi 71.4 3.1 6.8E-05 41.7 2.7 39 387-435 1-39 (206)
98 COG1219 ClpX ATP-dependent pro 71.2 3.8 8.3E-05 43.7 3.4 50 118-195 159-208 (408)
99 PRK10923 glnG nitrogen regulat 68.4 6.1 0.00013 44.0 4.5 81 111-241 222-302 (469)
100 PRK14956 DNA polymerase III su 68.0 11 0.00023 42.7 6.3 12 124-135 124-135 (484)
101 TIGR02640 gas_vesic_GvpN gas v 67.6 15 0.00033 37.9 7.0 27 562-588 228-254 (262)
102 PHA01747 putative ATP-dependen 63.3 24 0.00052 38.6 7.5 85 82-216 214-301 (425)
103 PF00004 AAA: ATPase family as 62.4 4.6 0.0001 35.8 1.8 30 204-246 100-130 (132)
104 PRK10865 protein disaggregatio 62.2 12 0.00026 45.4 5.7 99 121-264 670-780 (857)
105 PF13337 Lon_2: Putative ATP-d 62.0 48 0.001 37.2 9.8 84 81-216 228-311 (457)
106 PTZ00112 origin recognition co 60.4 1.5E+02 0.0033 36.5 13.8 39 459-497 1040-1088(1164)
107 PRK10787 DNA-binding ATP-depen 59.6 16 0.00035 43.8 6.1 106 329-437 261-368 (784)
108 KOG2004|consensus 58.3 9.3 0.0002 44.9 3.5 74 67-243 491-578 (906)
109 COG3284 AcoR Transcriptional a 57.1 9.6 0.00021 43.9 3.4 98 63-215 340-456 (606)
110 COG1221 PspF Transcriptional r 56.4 14 0.00031 40.8 4.5 108 64-215 106-223 (403)
111 KOG0991|consensus 55.8 17 0.00037 37.4 4.6 42 35-76 55-96 (333)
112 COG1220 HslU ATP-dependent pro 55.1 39 0.00085 36.6 7.3 50 312-367 350-400 (444)
113 KOG3347|consensus 54.2 38 0.00081 32.7 6.3 19 416-434 5-23 (176)
114 smart00550 Zalpha Z-DNA-bindin 53.9 66 0.0014 26.1 7.1 42 459-503 22-65 (68)
115 cd00092 HTH_CRP helix_turn_hel 53.0 81 0.0018 24.6 7.4 41 459-502 25-65 (67)
116 PRK13406 bchD magnesium chelat 52.5 37 0.00081 39.4 7.3 110 476-596 107-256 (584)
117 COG0703 AroK Shikimate kinase 52.3 27 0.00058 34.1 5.2 81 420-503 4-86 (172)
118 PRK14962 DNA polymerase III su 50.7 29 0.00062 39.3 5.9 18 118-135 114-131 (472)
119 PF12775 AAA_7: P-loop contain 49.9 31 0.00067 36.0 5.6 75 179-266 122-196 (272)
120 TIGR01243 CDC48 AAA family ATP 49.6 1.2E+02 0.0026 36.2 11.2 20 578-597 697-716 (733)
121 TIGR02903 spore_lon_C ATP-depe 48.4 37 0.0008 39.7 6.5 99 330-437 93-194 (615)
122 CHL00195 ycf46 Ycf46; Provisio 48.0 55 0.0012 37.2 7.6 35 205-253 359-395 (489)
123 smart00419 HTH_CRP helix_turn_ 47.5 51 0.0011 23.8 5.1 35 467-502 13-47 (48)
124 PRK13342 recombination factor 47.1 35 0.00075 37.7 5.8 15 121-135 92-106 (413)
125 PRK00440 rfc replication facto 46.8 1.5E+02 0.0034 30.6 10.4 40 40-81 21-60 (319)
126 smart00346 HTH_ICLR helix_turn 45.1 1.2E+02 0.0025 25.4 7.6 44 459-505 20-64 (91)
127 PRK14949 DNA polymerase III su 45.0 58 0.0013 39.7 7.4 15 121-135 119-133 (944)
128 PF07728 AAA_5: AAA domain (dy 44.7 12 0.00027 34.0 1.6 18 420-437 1-18 (139)
129 PF02082 Rrf2: Transcriptional 43.6 89 0.0019 26.2 6.5 52 456-510 22-75 (83)
130 PLN03025 replication factor C 43.2 49 0.0011 35.0 6.0 15 121-135 99-113 (319)
131 TIGR03345 VI_ClpV1 type VI sec 40.8 1.4E+02 0.0031 36.3 10.1 94 208-347 318-411 (852)
132 smart00345 HTH_GNTR helix_turn 40.8 63 0.0014 24.4 4.8 37 461-500 22-58 (60)
133 PF07848 PaaX: PaaX-like prote 40.8 79 0.0017 26.1 5.6 48 456-503 17-67 (70)
134 TIGR02881 spore_V_K stage V sp 40.1 2.6E+02 0.0056 28.6 10.6 21 417-437 41-61 (261)
135 PRK04132 replication factor C 39.4 53 0.0011 39.9 6.0 50 123-240 632-681 (846)
136 PRK00625 shikimate kinase; Pro 38.9 80 0.0017 30.6 6.3 15 420-434 2-16 (173)
137 PF09339 HTH_IclR: IclR helix- 38.6 98 0.0021 23.5 5.5 35 458-495 17-51 (52)
138 cd07377 WHTH_GntR Winged helix 38.3 1.7E+02 0.0038 22.3 7.1 35 467-501 30-64 (66)
139 PRK00411 cdc6 cell division co 38.0 5.4E+02 0.012 27.6 16.7 36 459-494 315-357 (394)
140 CHL00095 clpC Clp protease ATP 36.6 4.4E+02 0.0095 32.0 13.3 48 207-264 308-355 (821)
141 PF04703 FaeA: FaeA-like prote 36.2 1.4E+02 0.003 24.2 6.1 43 458-503 14-61 (62)
142 PRK08118 topology modulation p 36.1 59 0.0013 31.1 4.8 14 421-434 4-17 (167)
143 PRK14958 DNA polymerase III su 35.4 74 0.0016 36.3 6.2 15 121-135 119-133 (509)
144 COG0606 Predicted ATPase with 33.6 43 0.00094 37.7 3.8 39 387-435 177-215 (490)
145 PRK07940 DNA polymerase III su 33.6 28 0.0006 38.4 2.3 53 120-240 116-168 (394)
146 PRK12402 replication factor C 33.5 1.5E+02 0.0032 31.1 7.8 16 120-135 124-139 (337)
147 PHA02544 44 clamp loader, smal 33.4 74 0.0016 33.2 5.5 16 120-135 99-114 (316)
148 PLN03187 meiotic recombination 33.3 73 0.0016 34.5 5.4 56 416-477 125-189 (344)
149 COG2256 MGS1 ATPase related to 33.2 68 0.0015 35.5 5.1 45 178-249 119-163 (436)
150 PF01325 Fe_dep_repress: Iron 32.3 2.6E+02 0.0056 22.2 7.1 50 442-496 7-56 (60)
151 PRK07003 DNA polymerase III su 32.2 57 0.0012 39.1 4.6 15 121-135 119-133 (830)
152 PF14795 Leucyl-specific: Leuc 32.2 10 0.00022 29.4 -0.9 22 564-585 14-37 (56)
153 PF14947 HTH_45: Winged helix- 31.9 1.7E+02 0.0037 24.3 6.3 36 468-504 25-60 (77)
154 PRK12323 DNA polymerase III su 31.8 31 0.00067 40.6 2.4 14 122-135 125-138 (700)
155 COG2812 DnaX DNA polymerase II 30.8 98 0.0021 35.5 6.1 36 179-240 135-170 (515)
156 PF01591 6PF2K: 6-phosphofruct 30.7 70 0.0015 32.5 4.5 47 416-470 10-56 (222)
157 PRK14959 DNA polymerase III su 30.6 1.1E+02 0.0024 35.9 6.6 17 119-135 117-133 (624)
158 PRK06645 DNA polymerase III su 30.5 2.2E+02 0.0047 32.6 8.9 17 119-135 126-142 (507)
159 PRK05896 DNA polymerase III su 30.3 1E+02 0.0022 36.0 6.3 17 119-135 117-133 (605)
160 PRK08903 DnaA regulatory inact 30.2 1.1E+02 0.0023 30.5 5.8 53 64-135 47-104 (227)
161 PF05272 VirE: Virulence-assoc 30.2 40 0.00087 33.5 2.6 57 118-216 92-150 (198)
162 PRK07994 DNA polymerase III su 30.1 75 0.0016 37.4 5.2 56 122-247 120-176 (647)
163 TIGR02010 IscR iron-sulfur clu 29.7 1.5E+02 0.0033 27.2 6.3 53 456-511 22-76 (135)
164 PRK13341 recombination factor 29.5 86 0.0019 37.5 5.6 64 64-135 57-123 (725)
165 PF13412 HTH_24: Winged helix- 28.8 2.1E+02 0.0045 21.0 5.8 31 459-492 17-47 (48)
166 TIGR00738 rrf2_super rrf2 fami 28.7 1.6E+02 0.0034 26.6 6.2 52 457-511 23-76 (132)
167 COG1102 Cmk Cytidylate kinase 27.8 1E+02 0.0022 30.1 4.8 46 423-481 5-51 (179)
168 cd00009 AAA The AAA+ (ATPases 26.6 43 0.00094 29.3 2.0 19 419-437 20-38 (151)
169 PF13177 DNA_pol3_delta2: DNA 26.5 42 0.0009 32.0 2.0 24 35-58 26-49 (162)
170 PRK05563 DNA polymerase III su 26.5 1.7E+02 0.0038 33.8 7.3 17 119-135 117-133 (559)
171 TIGR02238 recomb_DMC1 meiotic 26.4 1E+02 0.0022 32.9 5.0 18 416-434 95-112 (313)
172 PF00004 AAA: ATPase family as 26.3 38 0.00083 29.8 1.6 15 421-435 1-15 (132)
173 smart00382 AAA ATPases associa 26.1 37 0.0008 29.3 1.4 17 420-436 4-20 (148)
174 PTZ00035 Rad51 protein; Provis 26.0 1.3E+02 0.0028 32.5 5.8 19 416-435 117-135 (337)
175 COG5271 MDN1 AAA ATPase contai 25.9 83 0.0018 41.3 4.6 90 107-245 1595-1687(4600)
176 PF01978 TrmB: Sugar-specific 25.8 1.2E+02 0.0027 24.1 4.4 37 459-498 22-58 (68)
177 PRK14952 DNA polymerase III su 25.6 1.6E+02 0.0034 34.4 6.7 17 119-135 116-132 (584)
178 PLN00020 ribulose bisphosphate 25.4 1.2E+02 0.0026 33.6 5.3 30 203-245 265-296 (413)
179 PRK03992 proteasome-activating 25.3 5.1E+02 0.011 28.3 10.5 38 561-598 342-379 (389)
180 COG4650 RtcR Sigma54-dependent 25.0 35 0.00076 36.2 1.2 58 77-135 233-296 (531)
181 PRK11331 5-methylcytosine-spec 25.0 98 0.0021 34.9 4.7 40 200-248 319-358 (459)
182 PRK14964 DNA polymerase III su 24.9 1.8E+02 0.0038 33.2 6.8 17 119-135 114-130 (491)
183 TIGR00763 lon ATP-dependent pr 24.8 1.2E+02 0.0025 36.6 5.7 107 329-437 259-366 (775)
184 PF13730 HTH_36: Helix-turn-he 24.7 1.8E+02 0.0039 21.9 4.9 26 467-492 30-55 (55)
185 COG0542 clpA ATP-binding subun 24.5 1.7E+02 0.0037 35.3 6.8 67 178-246 608-689 (786)
186 PF09012 FeoC: FeoC like trans 24.4 1.2E+02 0.0025 24.6 4.0 37 457-496 12-48 (69)
187 PRK14087 dnaA chromosomal repl 24.3 5.2E+02 0.011 29.0 10.4 72 421-500 144-218 (450)
188 KOG2545|consensus 24.1 1.7E+02 0.0036 32.7 6.0 69 312-388 460-528 (543)
189 PF08672 APC2: Anaphase promot 23.7 1.3E+02 0.0028 24.2 3.9 30 472-502 31-60 (60)
190 CHL00181 cbbX CbbX; Provisiona 23.7 1.6E+02 0.0035 30.8 5.9 18 418-435 59-76 (287)
191 cd01124 KaiC KaiC is a circadi 23.5 1.5E+02 0.0032 28.0 5.2 13 422-434 3-15 (187)
192 PF06163 DUF977: Bacterial pro 23.4 3.2E+02 0.0069 25.4 6.9 45 459-506 26-71 (127)
193 TIGR00764 lon_rel lon-related 23.2 78 0.0017 37.0 3.7 38 558-595 358-395 (608)
194 PRK13949 shikimate kinase; Pro 23.2 1.9E+02 0.004 27.7 5.8 15 421-435 4-18 (169)
195 PF08671 SinI: Anti-repressor 23.1 1.4E+02 0.003 20.7 3.4 23 464-486 7-29 (30)
196 PF08279 HTH_11: HTH domain; 23.0 3.3E+02 0.0072 20.4 6.7 34 459-495 15-48 (55)
197 PRK14961 DNA polymerase III su 22.8 1.3E+02 0.0027 32.7 5.1 16 120-135 118-133 (363)
198 PRK14957 DNA polymerase III su 22.5 2E+02 0.0042 33.3 6.7 17 119-135 117-133 (546)
199 PF00325 Crp: Bacterial regula 22.5 1.3E+02 0.0029 21.1 3.3 26 467-492 7-32 (32)
200 PRK11414 colanic acid/biofilm 22.4 3E+02 0.0066 27.2 7.4 41 456-499 31-72 (221)
201 KOG1942|consensus 22.3 1.9E+02 0.004 31.1 5.8 73 112-241 288-360 (456)
202 PRK06851 hypothetical protein; 22.2 87 0.0019 34.3 3.6 109 310-435 112-231 (367)
203 PRK13407 bchI magnesium chelat 22.2 82 0.0018 34.0 3.4 36 563-598 278-314 (334)
204 PRK14086 dnaA chromosomal repl 22.0 4E+02 0.0088 31.3 9.1 19 421-439 317-335 (617)
205 PRK14960 DNA polymerase III su 22.0 1.7E+02 0.0037 34.7 6.1 15 121-135 118-132 (702)
206 TIGR02431 pcaR_pcaU beta-ketoa 22.0 3.2E+02 0.0069 27.7 7.6 58 442-505 9-66 (248)
207 PF08220 HTH_DeoR: DeoR-like h 21.7 3.7E+02 0.008 20.9 6.2 40 458-500 13-52 (57)
208 COG0466 Lon ATP-dependent Lon 21.7 1.4E+02 0.0031 35.5 5.3 107 328-438 261-370 (782)
209 PRK12377 putative replication 21.6 1.9E+02 0.0041 29.8 5.8 75 419-501 102-176 (248)
210 PRK14965 DNA polymerase III su 21.6 1.7E+02 0.0037 34.0 6.0 17 119-135 117-133 (576)
211 PRK10857 DNA-binding transcrip 21.5 2.3E+02 0.0051 27.2 6.0 53 456-511 22-76 (164)
212 smart00529 HTH_DTXR Helix-turn 21.4 1.9E+02 0.004 24.4 4.9 38 466-503 3-40 (96)
213 PF06745 KaiC: KaiC; InterPro 21.3 2E+02 0.0043 28.4 5.8 17 417-434 19-35 (226)
214 PF03979 Sigma70_r1_1: Sigma-7 21.1 3.1E+02 0.0068 23.0 6.1 39 457-495 19-57 (82)
215 COG5271 MDN1 AAA ATPase contai 20.8 9.5E+02 0.021 32.7 11.9 92 100-240 932-1026(4600)
216 TIGR02653 Lon_rel_chp conserve 20.3 5.6E+02 0.012 30.4 9.7 109 81-241 236-350 (675)
217 smart00420 HTH_DEOR helix_turn 20.1 1.9E+02 0.0041 20.9 4.2 37 459-498 14-50 (53)
218 COG1224 TIP49 DNA helicase TIP 20.1 2.6E+02 0.0057 30.8 6.5 49 330-391 380-428 (450)
No 1
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.9e-83 Score=713.76 Aligned_cols=404 Identities=34% Similarity=0.501 Sum_probs=351.7
Q ss_pred CcchHHHHHHHHHHhhCccccchH--HhhhccchhhhHHHHhhhhhcccchhhhhhh----------ccCCchhhh-hHH
Q psy2640 9 GPTDTKIKSCLDFIERHNHLYNVA--EIEERRCYLVDIKVLMNDQIFNDQWKTFLQN----------LSNEPQHTI-NCL 75 (613)
Q Consensus 9 s~~~~~i~~~e~~~~~~~~lYd~~--~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~----------l~~~p~~~~-~~l 75 (613)
..+.+-.+.|.+ +.++|++|+.. +|+|+++||+|||+|+++|||||+.|.+.++ |.|+|+..+ ++|
T Consensus 258 ~~t~ed~e~i~e-lak~~~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlL 336 (682)
T COG1241 258 EITEEDEEEIKE-LAKRPDIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLL 336 (682)
T ss_pred cCCHHHHHHHHH-HhcCCcHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHH
Confidence 345677788888 99999999977 7999999999999999999999999999875 789999999 666
Q ss_pred HHhhhhhcceEEEecccccccCceEEEEeeC-CCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccc
Q psy2640 76 GLAMHHYIISVYVCGNTSTTSGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSR 154 (613)
Q Consensus 76 ~la~~~~~r~~~~~g~~~s~~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~ 154 (613)
.+..+.+||+|||||+|||++||||+++||+ ||+|+||+|||||||+|||||||||||+.
T Consensus 337 k~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~------------------- 397 (682)
T COG1241 337 KYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE------------------- 397 (682)
T ss_pred HHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh-------------------
Confidence 7788899999999999999999999999999 89999999999999999999999999999
Q ss_pred cccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccc
Q psy2640 155 QYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQ 234 (613)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~ 234 (613)
.++.+||||||||||||+||||+++|||||||||||||.+|+||+.+++.+||+||+
T Consensus 398 -----------------------~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~ 454 (682)
T COG1241 398 -----------------------EDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPA 454 (682)
T ss_pred -----------------------HHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCCh
Confidence 489999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHH
Q psy2640 235 ALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPL 314 (613)
Q Consensus 235 ~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~l 314 (613)
+|||||||||++.|.|+++.|+.+|+||+..|.+...... . + .+. .+ .... =++++
T Consensus 455 ~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~----------~--~--~~~-------~~-~~~~--~~~~~ 510 (682)
T COG1241 455 PLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEET----------I--S--LDG-------VD-EVEE--RDFEL 510 (682)
T ss_pred hHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccc----------c--c--ccc-------cc-cccc--CcHHH
Confidence 9999999999999999999999999999999964332100 0 0 000 00 0011 17899
Q ss_pred HHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccC---CCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC---
Q psy2640 315 LHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHH---SVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC--- 388 (613)
Q Consensus 315 LrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~---~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~--- 388 (613)
||+||+|||+++ +|+||++|.+.|.+||++||+... ....+|+|+||||++||||||| |||+|++.|+++||
T Consensus 511 lrkYI~YAR~~v-~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~-Ak~rLS~~V~~eD~~eA 588 (682)
T COG1241 511 LRKYISYARKNV-TPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAH-AKMRLSDVVEEEDVDEA 588 (682)
T ss_pred HHHHHHHHhccC-CcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHH-HhhhccCCCCHHHHHHH
Confidence 999999999998 899999999999999999998542 3467899999999999999999 99999999999999
Q ss_pred CccchhhHHHHHHHHhhhCCcccCCCCCCCcceeecCCCCCCcchhhhHHHHHHHHHHHHHHHhhhcCCccccHHHHHHH
Q psy2640 389 PSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQL 468 (613)
Q Consensus 389 ~~I~~~~~~k~gl~l~l~GG~~~~~~~rg~idil~vgdpGtgKSq~l~~~~~~~~~~~~l~~~~~~~~~~~~t~~el~~~ 468 (613)
..++..++...+. ++.+|.+|+ ++..+|.+++++ ++..+.+..+++....... +..++.+.
T Consensus 589 i~lv~~~l~~v~~-----------dp~~g~~d~-~~~~~~~~~~~~----~~~~~~~~~i~e~~~~~~~---~~~~~~~~ 649 (682)
T COG1241 589 IRLVDFSLKTVAV-----------DPEKGKIDI-DIIEPGKSKSKR----DKIEKVLDIIKELVERSED---PVEEIIEE 649 (682)
T ss_pred HHHHHHHHHHhhc-----------CccCCceeh-hhhccCCcchhh----hhHHHHHHHHHHHhhcccc---hHHHHHHH
Confidence 7777888777533 566788888 778899999998 6667777777765443222 56666555
Q ss_pred HHhCCCCHHHHHHHHHHHhhCCcEEecCCceEEE
Q psy2640 469 ATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQL 502 (613)
Q Consensus 469 a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l 502 (613)
+. |+++.+++++++.|...|.++.+.+|.|.+
T Consensus 650 ~~--g~~~~~~e~~l~~l~~~g~i~~~~~g~~~~ 681 (682)
T COG1241 650 AE--GISEKEVEEALEKLKKKGDILEPNPGYYLL 681 (682)
T ss_pred Hc--CCCHHHHHHHHHHHHhcCcEeccCCCeeec
Confidence 54 899999999999999999999999998875
No 2
>KOG0480|consensus
Probab=100.00 E-value=3.5e-81 Score=676.01 Aligned_cols=392 Identities=35% Similarity=0.500 Sum_probs=331.6
Q ss_pred HhhCccccchH--HhhhccchhhhHHHHhhhhhcccchhhhhhh----------ccCCchhhh-hHHHHhhhhhcceEEE
Q psy2640 22 IERHNHLYNVA--EIEERRCYLVDIKVLMNDQIFNDQWKTFLQN----------LSNEPQHTI-NCLGLAMHHYIISVYV 88 (613)
Q Consensus 22 ~~~~~~lYd~~--~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~----------l~~~p~~~~-~~l~la~~~~~r~~~~ 88 (613)
++..+++|... ++.|.+|||+-||+||+++||||+.|.-.++ +.|||+..+ +.|..|....||+|||
T Consensus 329 m~~~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt 408 (764)
T KOG0480|consen 329 MSKDENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT 408 (764)
T ss_pred HhcCchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe
Confidence 55688999966 8999999999999999999999999987654 789999999 6666777789999999
Q ss_pred ecccccccCceEEEEeeC-CCCeeecCceeecccCceeccccccCCCcccccccchhccccccccccccccccccccccc
Q psy2640 89 CGNTSTTSGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHP 167 (613)
Q Consensus 89 ~g~~~s~~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 167 (613)
||+.||++||||+|+||+ +|+|++|||||+|||+|||||||||||+.
T Consensus 409 sGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~-------------------------------- 456 (764)
T KOG0480|consen 409 SGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV-------------------------------- 456 (764)
T ss_pred cCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccCh--------------------------------
Confidence 999999999999999999 99999999999999999999999999998
Q ss_pred ccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEec
Q psy2640 168 VMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILL 247 (613)
Q Consensus 168 ~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~ 247 (613)
.+|.|||||||||+|||+|||++|+||||+||||||||++||||+.+++.+||++++|+||||||+|+|+
T Consensus 457 ----------~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLl 526 (764)
T KOG0480|consen 457 ----------KDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILL 526 (764)
T ss_pred ----------HhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEe
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcC
Q psy2640 248 DNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVS 327 (613)
Q Consensus 248 d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~ 327 (613)
|.|++..|..||+||+..|..... .......++.+.+++||.|||+ +
T Consensus 527 D~~nE~~D~~ia~hIld~h~~i~~-------------------------------~~~~~~~~~~e~vrkYi~yAR~-~- 573 (764)
T KOG0480|consen 527 DDCNEVVDYAIARHILDLHRGIDD-------------------------------ATERVCVYTLEQVRKYIRYARN-F- 573 (764)
T ss_pred cCCchHHHHHHHHHHHHHhccccc-------------------------------cccccccccHHHHHHHHHHHHh-c-
Confidence 999999999999999999853210 0011135889999999999995 6
Q ss_pred CCcCChHHHHHHHHHHHHHHhccC---CCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC---CccchhhHHHHHH
Q psy2640 328 KPELSTEAALLLQEFYLNLRKHHH---SVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC---PSIFGHEMVKAGL 401 (613)
Q Consensus 328 ~P~Ls~eA~~~L~~~Yv~lR~~~~---~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~---~~I~~~~~~k~gl 401 (613)
+|++|.||.+.|.++|.+||+... +.++.+||+||||||||||||+ ||+++++.++++|+ .+++..+++..
T Consensus 574 ~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~-Ar~~~~devt~~~v~ea~eLlk~Siv~v-- 650 (764)
T KOG0480|consen 574 KPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEAR-ARVECRDEVTKEDVEEAVELLKKSIVRV-- 650 (764)
T ss_pred CccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHH-HhhhhhhhccHHHHHHHHHHHHhhheee--
Confidence 899999999999999999998652 2357899999999999999999 99999999999999 45555555543
Q ss_pred HHhhhCCcccCCCCCCCcceeecCCCCCCcchhhhHHHHHHHHHHHHHHHhhhcCCccccHHHHHHHHH--hCCCCHHHH
Q psy2640 402 LLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLAT--SANISVDNF 479 (613)
Q Consensus 402 ~l~l~GG~~~~~~~rg~idil~vgdpGtgKSq~l~~~~~~~~~~~~l~~~~~~~~~~~~t~~el~~~a~--~~gi~~~~~ 479 (613)
.-+. .+..|. +--+.|.|+|+. ...++|...+.+....+..-.+.+...++.++ +.++-.+.+
T Consensus 651 e~dd----------i~~~d~-~~~~~~~g~s~~----~~~k~~~~a~~~y~~~~~~~v~~~~~~~E~~~~~~~~lv~~~l 715 (764)
T KOG0480|consen 651 EGDD----------IELDDN-DGENDSGGESAQ----KPKKKFTSALDEYVRLSNGIVLSIRVERELADLKRSNLVVWYL 715 (764)
T ss_pred cccc----------cccccc-ccccCccccccc----chhhHHHHHHHHHHHHhhceeEEEEeecchhhhhhhhhhhhhH
Confidence 1111 112221 112344567766 33467777777766655555555554445555 678889999
Q ss_pred HHHHHHHhhCCcEEecCCceEEEechh
Q psy2640 480 FTFLTSLNDQGFLLKKGKQLYQLMSAK 506 (613)
Q Consensus 480 ~~~i~~L~~~G~i~~~g~~~~~l~~~~ 506 (613)
+++.+.|+.+|.++++++.+|+++++.
T Consensus 716 ~~~e~~l~~e~~li~k~~~~~kvi~rl 742 (764)
T KOG0480|consen 716 SEFEDSLNSEGELIKKGPKVYKVISRL 742 (764)
T ss_pred HHHHhhhccHHHHHHhcchHHHHHHHH
Confidence 999999999999999999999987654
No 3
>KOG0481|consensus
Probab=100.00 E-value=1.4e-77 Score=633.32 Aligned_cols=388 Identities=31% Similarity=0.422 Sum_probs=321.8
Q ss_pred chHHHHHHHHHHhhCccccchH--HhhhccchhhhHHHHhhhhhcccchhhhhhh----------ccCCchhhh-hHHHH
Q psy2640 11 TDTKIKSCLDFIERHNHLYNVA--EIEERRCYLVDIKVLMNDQIFNDQWKTFLQN----------LSNEPQHTI-NCLGL 77 (613)
Q Consensus 11 ~~~~i~~~e~~~~~~~~lYd~~--~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~----------l~~~p~~~~-~~l~l 77 (613)
+.+--..|-+ |+++|++|+.. +|+|++||++|+|+|++|.||||+.|.++|+ |-|+|+..+ ++|.+
T Consensus 305 t~eEEEeFk~-la~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKF 383 (729)
T KOG0481|consen 305 TPEEEEEFKK-LAASPDVYERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKF 383 (729)
T ss_pred ChhHHHHHHH-HhcCccHHHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHH
Confidence 5566677777 89999999965 8999999999999999999999999999998 668888888 66667
Q ss_pred hhhhhcceEEEecccccccCceEEEEeeC-CCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccc
Q psy2640 78 AMHHYIISVYVCGNTSTTSGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQY 156 (613)
Q Consensus 78 a~~~~~r~~~~~g~~~s~~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~ 156 (613)
.-..+|.+|||||+|||++||||+|.||+ |.+|.+|+||+||||||||||||||||.+
T Consensus 384 vEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre--------------------- 442 (729)
T KOG0481|consen 384 VEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRE--------------------- 442 (729)
T ss_pred HHhcCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCc---------------------
Confidence 77788999999999999999999999999 88999999999999999999999999999
Q ss_pred cccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccc
Q psy2640 157 TPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQAL 236 (613)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~l 236 (613)
.|+.|+||||||||||||||||+++||+||||||||||++|+||..++..+||++.+++
T Consensus 443 ---------------------~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TI 501 (729)
T KOG0481|consen 443 ---------------------DDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTI 501 (729)
T ss_pred ---------------------hhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhH
Confidence 58999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHH
Q psy2640 237 LSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLH 316 (613)
Q Consensus 237 lsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLr 316 (613)
|||||+||++.|..++..|..||+||+++|.++... .+.+ .+.....++.+.||
T Consensus 502 LSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~----------------~~~~----------~~~~~~ei~~~~~K 555 (729)
T KOG0481|consen 502 LSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANA----------------QTDS----------QEENEGEIPIEKLK 555 (729)
T ss_pred hhhccEEEEEeccCcchhhhHHHHHhhhhhcccccc----------------ccCc----------cccCCCcccHHHHH
Confidence 999999999999999999999999999999643210 0000 01123458999999
Q ss_pred HHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhcc-------CCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC-
Q psy2640 317 KYLAYARKYVSKPELSTEAALLLQEFYLNLRKHH-------HSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC- 388 (613)
Q Consensus 317 kYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~-------~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~- 388 (613)
+||.|||-+| .|+||++|.+.|...|+.||+.- ....++|||+||||+|||++|++ |||+|+.++++.|+
T Consensus 556 ryI~YcR~kc-~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESL-AKm~Ls~~ate~hV~ 633 (729)
T KOG0481|consen 556 RYIQYCRLKC-GPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESL-AKMELSPFATEAHVE 633 (729)
T ss_pred HHHHHHHhcc-CCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHH-HhhcCCccccHHHHH
Confidence 9999999999 99999999999999999999732 22367999999999999999999 99999999999999
Q ss_pred --CccchhhHHHHHHHHhhhCCcccCCCCCCCcceeecCCCCCCcchhhhHHHHHHHHHHHHHHHhhhcCCccccHHHH-
Q psy2640 389 --PSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTEL- 465 (613)
Q Consensus 389 --~~I~~~~~~k~gl~l~l~GG~~~~~~~rg~idil~vgdpGtgKSq~l~~~~~~~~~~~~l~~~~~~~~~~~~t~~el- 465 (613)
..+|.-+...++. . |.++. -.|-..... .+.++++-..|+.+....+ -++...+
T Consensus 634 EA~RLF~vSTmdAa~----~----------g~l~g----~egf~s~e~---~e~i~rie~qlkrr~~IG~--~~se~~li 690 (729)
T KOG0481|consen 634 EALRLFQVSTMDAAS----Q----------GTLAG----VEGFTSPED---QEEIKRIEKQLKRRFAIGS--QVSEHSLI 690 (729)
T ss_pred HHHHHHhHhhHHHHh----c----------Cchhc----ccccCCHHH---HHHHHHHHHHHHHhccccc--chhHHHHH
Confidence 5566667666632 1 12221 111111111 0344555555665543322 2344444
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhCCcEE
Q psy2640 466 KQLATSANISVDNFFTFLTSLNDQGFLL 493 (613)
Q Consensus 466 ~~~a~~~gi~~~~~~~~i~~L~~~G~i~ 493 (613)
++++ ..|.+++.++..|..|...|.+.
T Consensus 691 ~df~-~~~y~e~~v~kal~~m~~rg~iq 717 (729)
T KOG0481|consen 691 RDFV-RQGYSEHAVKKALQIMLRRGEIQ 717 (729)
T ss_pred HHHH-hccccHHHHHHHHHHHHhhhHHH
Confidence 5666 56999999999999998888664
No 4
>KOG0478|consensus
Probab=100.00 E-value=3.5e-77 Score=649.16 Aligned_cols=379 Identities=32% Similarity=0.469 Sum_probs=318.8
Q ss_pred HHHHHHHHhhCccccchH--HhhhccchhhhHHHHhhhhhcccchhhhhhh----------ccCCchhhh-hHHHHhhhh
Q psy2640 15 IKSCLDFIERHNHLYNVA--EIEERRCYLVDIKVLMNDQIFNDQWKTFLQN----------LSNEPQHTI-NCLGLAMHH 81 (613)
Q Consensus 15 i~~~e~~~~~~~~lYd~~--~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~----------l~~~p~~~~-~~l~la~~~ 81 (613)
+..+.. +..+||+|+.+ +|||++|+|+|+|+|++||||||+.|++..+ |.|||+..+ ++|.++...
T Consensus 407 ~e~i~e-lskrpdiy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l 485 (804)
T KOG0478|consen 407 LEKIQE-LSKRPDIYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRL 485 (804)
T ss_pred HHHHHH-HhcCccHHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHh
Confidence 444555 77899999977 8999999999999999999999999998773 789999999 888899999
Q ss_pred hcceEEEecccccccCceEEEEeeC-CCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccc
Q psy2640 82 YIISVYVCGNTSTTSGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAF 160 (613)
Q Consensus 82 ~~r~~~~~g~~~s~~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~ 160 (613)
+|||+||||+|||++||||+|+||+ |++|+||.|||||||+|+|||||||||++
T Consensus 486 ~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d------------------------- 540 (804)
T KOG0478|consen 486 LPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSD------------------------- 540 (804)
T ss_pred CCcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhH-------------------------
Confidence 9999999999999999999999999 99999999999999999999999999998
Q ss_pred cccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccc
Q psy2640 161 ITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRF 240 (613)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRF 240 (613)
++++.|||+|||||+|||||||+++|||||||||+|||..++||+++++.|||+||++|||||
T Consensus 541 -----------------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRF 603 (804)
T KOG0478|consen 541 -----------------STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRF 603 (804)
T ss_pred -----------------HHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhh
Confidence 489999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHH
Q psy2640 241 DLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLA 320 (613)
Q Consensus 241 DLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~ 320 (613)
||||+++|.+|+..|+.|+.||+.+|.+... .+....++..+++.||.
T Consensus 604 DLIylllD~~DE~~Dr~La~HivsLy~e~~~--------------------------------~~~~~~~d~~~lr~yi~ 651 (804)
T KOG0478|consen 604 DLIFLLLDKPDERSDRRLADHIVALYPETGE--------------------------------KQGSEAIDMNLLRDYIR 651 (804)
T ss_pred cEEEEEecCcchhHHHHHHHHHHHhcccccc--------------------------------cchhHHHhHHHHHHHHH
Confidence 9999999999999999999999999953210 01122478899999999
Q ss_pred HHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCccchhhHHHHH
Q psy2640 321 YARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAG 400 (613)
Q Consensus 321 ~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~~~~k~g 400 (613)
|||+++ +|.+++||.+.+..+|+.||+.+...+.+..|+||+|+|+||+||| ||+++++.|...|+.+.+..--.-.
T Consensus 652 yArk~i-~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEah-ak~r~s~~ve~~dV~eA~~l~R~aL- 728 (804)
T KOG0478|consen 652 YARKNI-HPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAH-AKMRLSNRVEEIDVEEAVRLLREAL- 728 (804)
T ss_pred HHhccC-CccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHH-HHhhcccccchhhHHHHHHHHHHHh-
Confidence 999998 9999999999999999999998876667889999999999999999 9999999999999855543211110
Q ss_pred HHHhhhCCcccCCCCCCCcceeecCCCCCCcchhhhHHHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHHHHH
Q psy2640 401 LLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFF 480 (613)
Q Consensus 401 l~l~l~GG~~~~~~~rg~idil~vgdpGtgKSq~l~~~~~~~~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~~~~ 480 (613)
+...+++.+|.+|+. +.. +|+|.... ........++..... .. .+.++....|.
T Consensus 729 -------~~~a~d~~tg~vd~~-~l~--tg~s~~~~--~~~~~~~~ai~~~l~-------------~~-~~~~~~~~~~~ 782 (804)
T KOG0478|consen 729 -------KQSATDPATGKVDMD-ILA--TGNSVVSR--KKVEILGGAILKMLK-------------DE-SQKGIEEEMFL 782 (804)
T ss_pred -------cccCCCCCCCceeeh-hhh--hcccccch--HHHHHHHHHHHHHhH-------------HH-HHHHHHHHHHH
Confidence 123457788899983 333 44444311 122222233322211 12 34456677888
Q ss_pred HHHHHHhhCCcEEecCC
Q psy2640 481 TFLTSLNDQGFLLKKGK 497 (613)
Q Consensus 481 ~~i~~L~~~G~i~~~g~ 497 (613)
+.++.|.++|.+...+.
T Consensus 783 ~al~~l~~~~~~~~s~~ 799 (804)
T KOG0478|consen 783 EALEELQKEGKIIVSGK 799 (804)
T ss_pred HHHHHHhhcCceeeccc
Confidence 89999999998887765
No 5
>KOG0482|consensus
Probab=100.00 E-value=4e-77 Score=629.32 Aligned_cols=388 Identities=28% Similarity=0.389 Sum_probs=331.4
Q ss_pred eecCCCcchHHHHHHHHHHhhCccccchH--HhhhccchhhhHHHHhhhhhcccchhhhhhh----------ccCCchhh
Q psy2640 4 SYKKDGPTDTKIKSCLDFIERHNHLYNVA--EIEERRCYLVDIKVLMNDQIFNDQWKTFLQN----------LSNEPQHT 71 (613)
Q Consensus 4 ~Y~~~s~~~~~i~~~e~~~~~~~~lYd~~--~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~----------l~~~p~~~ 71 (613)
+|++.+.+-+--.+... +..-.+.|+++ +|||++|||+||||++++.|+||+.+...+| |+|+|+..
T Consensus 309 ~~~~~~~~~~~~~~~~~-~~~~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVA 387 (721)
T KOG0482|consen 309 KYDNIEKTGELEPEELE-LIAEGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVA 387 (721)
T ss_pred ccccccccccccHHHHH-HhhcccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchh
Confidence 34555555554555555 66778999977 8999999999999999999999999998776 89999999
Q ss_pred h-hHHHHhhhhhcceEEEecccccccCceEEEEeeC-CCCeeecCceeecccCceeccccccCCCcccccccchhccccc
Q psy2640 72 I-NCLGLAMHHYIISVYVCGNTSTTSGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMR 149 (613)
Q Consensus 72 ~-~~l~la~~~~~r~~~~~g~~~s~~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~ 149 (613)
+ ++|++....+|||+||+|+|||++||||+|.||| |||.+||+|||||||+|||||||||||.+
T Consensus 388 KSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e-------------- 453 (721)
T KOG0482|consen 388 KSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDE-------------- 453 (721)
T ss_pred HHHHHHHHHhcCcccceecCCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhh--------------
Confidence 9 7888889999999999999999999999999999 99999999999999999999999999999
Q ss_pred ccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhh
Q psy2640 150 GITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAEN 229 (613)
Q Consensus 150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~ 229 (613)
.++.|+||+||||||||+||||.++|||||+|||||||.+|+||+..++.+|
T Consensus 454 ----------------------------~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~N 505 (721)
T KOG0482|consen 454 ----------------------------SDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQN 505 (721)
T ss_pred ----------------------------hhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHh
Confidence 4899999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCC
Q psy2640 230 LRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPL 309 (613)
Q Consensus 230 i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~ 309 (613)
|+||.+|||||||+|++.|.||.+.|..+|+||...|.++.. +.....+
T Consensus 506 I~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~q-------------------------------p~~~fep 554 (721)
T KOG0482|consen 506 INLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQ-------------------------------PPLDFEP 554 (721)
T ss_pred cCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCC-------------------------------CCccCCC
Confidence 999999999999999999999999999999999999964321 1123457
Q ss_pred CCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCC-CCcccchHHHHHHHHHHHhhhhcchhhhhhccccC
Q psy2640 310 IPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSV-DATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC 388 (613)
Q Consensus 310 i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~-~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~ 388 (613)
++++++|.||++||++ +|.++++..++|..+|++||++..+. +....|+|.|.+|+|||.|+ ||+++++.|.++|+
T Consensus 555 l~~~~mR~yI~~ak~~--~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~Al-arLRls~~V~~~DV 631 (721)
T KOG0482|consen 555 LDPNLMRRYISLAKRK--NPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTAL-ARLRLSDSVEEDDV 631 (721)
T ss_pred CCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHH-HHhhhccccchhhH
Confidence 9999999999999996 89999999999999999999976433 45567999999999999999 99999999999999
Q ss_pred Cccchh-hHHHHHHHHhhhCCcccCCCCCCCcceeecCCCCCCcchhhhHHHHHHHHHHHHHHHhhhcCCccccHHHHHH
Q psy2640 389 PSIFGH-EMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQ 467 (613)
Q Consensus 389 ~~I~~~-~~~k~gl~l~l~GG~~~~~~~rg~idil~vgdpGtgKSq~l~~~~~~~~~~~~l~~~~~~~~~~~~t~~el~~ 467 (613)
-+.+.. ++-|..+. + + ++.+...+ ....++.+++++....+...+++..+.+
T Consensus 632 ~EALRLme~sK~sL~----~----------~-------~~~~~~~~------~~~~if~iirel~~e~g~~~v~~s~~~~ 684 (721)
T KOG0482|consen 632 NEALRLMEMSKDSLY----Q----------D-------DGQKEDTS------ATDAIFAIIRELAGEGGKRCVKLSNAEQ 684 (721)
T ss_pred HHHHHHHHhhhcccc----c----------c-------cccccccc------hHHHHHHHHHHHHhhcCCceeeHHHHHH
Confidence 665543 22232111 1 0 11111111 1355667777776656666788999999
Q ss_pred HHHhCCCCHHHHHHHHHHHhhCCcEEec
Q psy2640 468 LATSANISVDNFFTFLTSLNDQGFLLKK 495 (613)
Q Consensus 468 ~a~~~gi~~~~~~~~i~~L~~~G~i~~~ 495 (613)
.+...|+++.+++.+|+.+.+-|++...
T Consensus 685 r~~~kGfs~~ql~~~i~ey~~lnVw~~~ 712 (721)
T KOG0482|consen 685 RCVRKGFSEAQLKKCIDEYAELNVWQVN 712 (721)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCeEEEe
Confidence 9999999999999999999988766543
No 6
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=5.8e-70 Score=622.02 Aligned_cols=425 Identities=23% Similarity=0.375 Sum_probs=347.6
Q ss_pred CcchHHHHHHHHHHhhCccccchH--HhhhccchhhhHHHHhhhhhcccchhhh-----hhh--------------ccCC
Q psy2640 9 GPTDTKIKSCLDFIERHNHLYNVA--EIEERRCYLVDIKVLMNDQIFNDQWKTF-----LQN--------------LSNE 67 (613)
Q Consensus 9 s~~~~~i~~~e~~~~~~~~lYd~~--~I~~~~~~~~dvK~~i~~qlfgg~~k~~-----~~~--------------l~~~ 67 (613)
..+.+-++.|.+ ++++|++|+.+ +|+|+++|+++||+|+++|||||+.|.. +++ |.|+
T Consensus 422 ~~t~ed~~~I~~-ls~~p~i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGD 500 (915)
T PTZ00111 422 DFSDLQVYKILE-LSRNPMIYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGD 500 (915)
T ss_pred cCCHHHHHHHHH-HhcCHHHHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCC
Confidence 356678888988 99999999966 8999999999999999999999997632 221 6799
Q ss_pred chhhhhHHHHhhhh-hcceEEEecccccccCceEEEE-eeC-CCCeeecCceeecccCceeccccccCCCcccccccchh
Q psy2640 68 PQHTINCLGLAMHH-YIISVYVCGNTSTTSGLTVTLS-REG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYT 144 (613)
Q Consensus 68 p~~~~~~l~la~~~-~~r~~~~~g~~~s~~gLta~~~-~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~ 144 (613)
|+..+..|.-++|. +||++||+|++++++||||++. +++ +|+|.+++||+++||+|+||||||++|+.
T Consensus 501 PGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~--------- 571 (915)
T PTZ00111 501 PGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHN--------- 571 (915)
T ss_pred CCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCH---------
Confidence 99999777777765 6999999999999999999988 666 89999999999999999999999999998
Q ss_pred cccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCc
Q psy2640 145 AKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAK 224 (613)
Q Consensus 145 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~ 224 (613)
.++.+|||+||||+|||+|+|+.++||+||+||||+||++|+||+.+
T Consensus 572 ---------------------------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~ 618 (915)
T PTZ00111 572 ---------------------------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNK 618 (915)
T ss_pred ---------------------------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCccc
Confidence 58999999999999999999999999999999999999999999999
Q ss_pred cchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q psy2640 225 TVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPG 304 (613)
Q Consensus 225 ~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g 304 (613)
++.+|++||++|||||||||+++|.++++.|..||+||++.|...+....... ............+ .+.. ...
T Consensus 619 s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~--~~~~~~~~~~~~~---~~~~--~~~ 691 (915)
T PTZ00111 619 AVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGND--EDTYDRSNTMHVE---DESL--RSE 691 (915)
T ss_pred CcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhccccccccccc--ccchhcccccccc---cccc--ccc
Confidence 99999999999999999999999999999999999999998732111000000 0000000000000 0000 011
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhcc------------------------CCCCCcccch
Q psy2640 305 EELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHH------------------------HSVDATPVTT 360 (613)
Q Consensus 305 ~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~------------------------~~~~~~~iT~ 360 (613)
.....++.++|++||+|||++| +|+||+||.+.|.++|++||+.. .+...+++|+
T Consensus 692 ~~~~~i~~~lLrkYI~YAR~~~-~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~ 770 (915)
T PTZ00111 692 KDYNKNDLDMLRMYIKFSKLHC-FPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSS 770 (915)
T ss_pred cccCCCCHHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccH
Confidence 1234589999999999999999 99999999999999999999731 1224689999
Q ss_pred HHHHHHHHHHHhhhhcchhhhhhccccC---CccchhhHHHHHHHHhhhCCcccCCCCCCCcceeecCCCCCCcchhhhH
Q psy2640 361 RQLESLVRLTQDIQAEPNLFKLLVNSLC---PSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHA 437 (613)
Q Consensus 361 R~LEsliRLseA~~Ak~~l~~~v~~sd~---~~I~~~~~~k~gl~l~l~GG~~~~~~~rg~idil~vgdpGtgKSq~l~~ 437 (613)
||||+|||||||| |||+|++.|+++|| +.|+..++.+.+ .|+.+|.+|+ ++...|+++|++
T Consensus 771 RqLEsLIRLsEA~-AK~rLs~~Vt~~Dv~~Ai~L~~~sl~~~~-----------~DpetG~iD~-d~~~~G~s~~~r--- 834 (915)
T PTZ00111 771 RMISSIIRISVSL-ARMRLSTVVTPADALQAVQIVKSSTFQSL-----------VDPTTGKIDF-DQLHQGITTNKM--- 834 (915)
T ss_pred HHHHHHHHHHHHH-hhhcCcCcccHHHHHHHHHHHHHHHhhhc-----------ccccCCcccc-eeeccCCcHHHH---
Confidence 9999999999999 99999999999999 677777777663 2567789998 777888998888
Q ss_pred HHHHHHHHHHHHHHhhh----cCCccccHHHHHHHH---------HhCCCCHHHHHHHHHHHhhCCcEEecCCceEE
Q psy2640 438 CCAAKKFISVLQKKAEV----QSRSVFTVTELKQLA---------TSANISVDNFFTFLTSLNDQGFLLKKGKQLYQ 501 (613)
Q Consensus 438 ~~~~~~~~~~l~~~~~~----~~~~~~t~~el~~~a---------~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~ 501 (613)
.++..+.+.+...... .+.+.++++++.+.+ .+.|++.++++++|++|.++|.++++.+|+|+
T Consensus 835 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~g~i~~~~~g~y~ 910 (915)
T PTZ00111 835 -QQLNQMYEQVLSVLTRSSNQDSNKSLDLNEVLSLCHKTFKDNRDHKDGEIYKLISEVLNKMVQEGTAVRENNSYYL 910 (915)
T ss_pred -HHHHHHHHHHHHHHHhhhccccCCceeHHHHHHHHHhhccccchhccCCCHHHHHHHHHHHHhCCeEeeeCCCchh
Confidence 4444454444443321 233568999998776 45689999999999999999999999999998
No 7
>KOG0477|consensus
Probab=100.00 E-value=5.4e-71 Score=593.64 Aligned_cols=328 Identities=33% Similarity=0.478 Sum_probs=293.1
Q ss_pred CCcchHHHHHHHHHHhhCccccc--hHHhhhccchhhhHHHHhhhhhcccchhhhhhh----------ccCCchhhh-hH
Q psy2640 8 DGPTDTKIKSCLDFIERHNHLYN--VAEIEERRCYLVDIKVLMNDQIFNDQWKTFLQN----------LSNEPQHTI-NC 74 (613)
Q Consensus 8 ~s~~~~~i~~~e~~~~~~~~lYd--~~~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~----------l~~~p~~~~-~~ 74 (613)
++.+.+.++.|.+ +.++|.+-+ ..+|+|++|||.|||.|+++.||||+.|+...+ |-|+|++.+ +.
T Consensus 420 ~~ltded~k~i~~-lskd~~i~~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQF 498 (854)
T KOG0477|consen 420 DELTDEDFKEIWE-LSKDPPIKERIIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQF 498 (854)
T ss_pred hHHhHHHHHHHHH-HhcCccHHHHHHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHH
Confidence 4568899999999 889999888 448999999999999999999999999986553 789999999 89
Q ss_pred HHHhhhhhcceEEEecccccccCceEEEEeeC-CCCeeecCceeecccCceeccccccCCCcccccccchhccccccccc
Q psy2640 75 LGLAMHHYIISVYVCGNTSTTSGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITS 153 (613)
Q Consensus 75 l~la~~~~~r~~~~~g~~~s~~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~ 153 (613)
|.+|.++++|+|||+|.|+|++||||+|.||| +++|+||+|||||||+|||||||||||++|
T Consensus 499 LKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndq----------------- 561 (854)
T KOG0477|consen 499 LKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQ----------------- 561 (854)
T ss_pred HHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhccc-----------------
Confidence 99999999999999999999999999999999 999999999999999999999999999994
Q ss_pred ccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhcccc
Q psy2640 154 RQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMG 233 (613)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~ 233 (613)
+|.++|||||||+|||+||||+++|+|||+|||||||++|+||+..++.+|+++.
T Consensus 562 -------------------------DRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~lt 616 (854)
T KOG0477|consen 562 -------------------------DRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLT 616 (854)
T ss_pred -------------------------ccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccc
Confidence 7899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHH
Q psy2640 234 QALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAP 313 (613)
Q Consensus 234 ~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~ 313 (613)
+|+|||||+++++.|..|+..|.++|+.|+.+|...++.... .... .+..+. ....++|.+
T Consensus 617 ePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~------~~~~-----~e~~~~--------~~v~~ipq~ 677 (854)
T KOG0477|consen 617 EPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKE------EDGL-----EEPQMP--------ARVEPIPQE 677 (854)
T ss_pred cchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccc------cCcc-----cccccc--------cccccChHH
Confidence 999999999999999999999999999999999654432100 0000 001111 113469999
Q ss_pred HHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC---Cc
Q psy2640 314 LLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC---PS 390 (613)
Q Consensus 314 lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~---~~ 390 (613)
+|||||.|||.+| +|+|..--.+.+...|..||+++....++|||.|.+|++||++||| |||+|+++|+++|+ +.
T Consensus 678 lLrkyI~yar~~v-~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAh-Arm~Lr~~V~~~d~~~AI~ 755 (854)
T KOG0477|consen 678 LLRKYIIYAREKV-RPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAH-ARMHLREYVTEEDVDMAIR 755 (854)
T ss_pred HHHHHHHHHHHhc-ccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHH-HHHHHHhhccHhHHHHHHH
Confidence 9999999999999 9999999999999999999999988889999999999999999999 99999999999999 44
Q ss_pred cchhhHHHH
Q psy2640 391 IFGHEMVKA 399 (613)
Q Consensus 391 I~~~~~~k~ 399 (613)
++-++.+.+
T Consensus 756 v~ldSfi~a 764 (854)
T KOG0477|consen 756 VMLDSFISA 764 (854)
T ss_pred HHHHHHHHH
Confidence 444554433
No 8
>KOG0479|consensus
Probab=100.00 E-value=2e-70 Score=585.70 Aligned_cols=344 Identities=31% Similarity=0.482 Sum_probs=293.0
Q ss_pred cchHHHHHHHHHHhhCccccchH--HhhhccchhhhHHHHhhhhhcccchhhhhhh----------ccCCchhhh-hHHH
Q psy2640 10 PTDTKIKSCLDFIERHNHLYNVA--EIEERRCYLVDIKVLMNDQIFNDQWKTFLQN----------LSNEPQHTI-NCLG 76 (613)
Q Consensus 10 ~~~~~i~~~e~~~~~~~~lYd~~--~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~----------l~~~p~~~~-~~l~ 76 (613)
...+-++-|.+ |++.-++++.+ +.||++|||.-||+||+|.|+||+.|++..| |.|+|...+ ++|.
T Consensus 274 ~t~~Di~~i~k-lsk~kdiFdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLR 352 (818)
T KOG0479|consen 274 FTDEDIRNIKK-LSKKKDIFDLLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLR 352 (818)
T ss_pred CChhhHHHHHH-HHhcCCHHHHHhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHH
Confidence 35677899999 99999999987 7899999999999999999999999999876 789999998 7788
Q ss_pred HhhhhhcceEEEecccccccCceEEEEeeC-CCCeeecCceeecccCceeccccccCCCcccccccchhccccccccccc
Q psy2640 77 LAMHHYIISVYVCGNTSTTSGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQ 155 (613)
Q Consensus 77 la~~~~~r~~~~~g~~~s~~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~ 155 (613)
+....+|+++-|+|+|||++||||+|+-|+ |||..|||||+||||+||+||||||||++
T Consensus 353 yVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsD-------------------- 412 (818)
T KOG0479|consen 353 YVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSD-------------------- 412 (818)
T ss_pred HHHhcccccccccCCCCCCccceeEEeeccccchhhhhcCceEEccCceEEehhcccccc--------------------
Confidence 899999999999999999999999999999 99999999999999999999999999999
Q ss_pred ccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhcccccc
Q psy2640 156 YTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQA 235 (613)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~ 235 (613)
-++.|+||+||||+|+|+||||.++|||||||||||||++|+||..++..+||.||.+
T Consensus 413 ----------------------iDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDS 470 (818)
T KOG0479|consen 413 ----------------------IDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDS 470 (818)
T ss_pred ----------------------hhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHH
Confidence 3899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCC-----CCCCCCCCCCCCCCC-CCCCCcccccccC----C-CCC
Q psy2640 236 LLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSN-----RNPSHSTQSFTENPN-SVQSDIPLSERLK----P-GPG 304 (613)
Q Consensus 236 llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~l~~~l~----~-~~g 304 (613)
|||||||+|+++|..|.+.|+.|++||+++|....++ +.+.....+..+..+ +...+...++++. . ...
T Consensus 471 LLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~ 550 (818)
T KOG0479|consen 471 LLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQ 550 (818)
T ss_pred HHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhccccc
Confidence 9999999999999999999999999999999543222 001110000000001 1111222222221 0 012
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCC---CCCcccchHHHHHHHHHHHhhhhcchhhh
Q psy2640 305 EELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHS---VDATPVTTRQLESLVRLTQDIQAEPNLFK 381 (613)
Q Consensus 305 ~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~---~~~~~iT~R~LEsliRLseA~~Ak~~l~~ 381 (613)
.....++.+++||||.|||..+ +|+|+.||.++|.+.|-.||..... ....|+|+|+||.|||||.|| ||+++++
T Consensus 551 ~~~k~lti~F~rKYIhyAk~ri-~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAh-AKaRlSk 628 (818)
T KOG0479|consen 551 QHEKLLTIDFMRKYIHYAKSRI-KPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAH-AKARLSK 628 (818)
T ss_pred cccceeeHHHHHHHHHHHHhhc-CccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHH-HHhhhcc
Confidence 3445688999999999999988 9999999999999999999986543 457899999999999999999 9999999
Q ss_pred hhccccC---CccchhhHHH
Q psy2640 382 LLVNSLC---PSIFGHEMVK 398 (613)
Q Consensus 382 ~v~~sd~---~~I~~~~~~k 398 (613)
.|+..|+ ..++.+...+
T Consensus 629 ~V~~~DAe~A~~Ll~fA~f~ 648 (818)
T KOG0479|consen 629 VVEKDDAEAAVNLLRFALFK 648 (818)
T ss_pred eeehhhHHHHHHHHHHHHHh
Confidence 9999999 5555555554
No 9
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=6.8e-70 Score=576.35 Aligned_cols=310 Identities=39% Similarity=0.571 Sum_probs=247.4
Q ss_pred HHHHHHHHhhCccccchH--HhhhccchhhhHHHHhhhhhcccchhhhhhh----------ccCCchhhh-hHHHHhhhh
Q psy2640 15 IKSCLDFIERHNHLYNVA--EIEERRCYLVDIKVLMNDQIFNDQWKTFLQN----------LSNEPQHTI-NCLGLAMHH 81 (613)
Q Consensus 15 i~~~e~~~~~~~~lYd~~--~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~----------l~~~p~~~~-~~l~la~~~ 81 (613)
++.|.+ +.+.|++|+.. +|+|.+++++++|+|++++||||+.+...++ +.|+|+..+ .+|.++.+.
T Consensus 2 ~~~i~~-l~~~~~~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~ 80 (331)
T PF00493_consen 2 EEKIKE-LSKKPNIFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKL 80 (331)
T ss_dssp HHHHHC-CCCTTTHHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT
T ss_pred HHHHHH-HhcCCcHHHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhh
Confidence 356666 88999999955 8999999999999999999999999876652 799999999 666678889
Q ss_pred hcceEEEecccccccCceEEEEeeC-CCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccc
Q psy2640 82 YIISVYVCGNTSTTSGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAF 160 (613)
Q Consensus 82 ~~r~~~~~g~~~s~~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~ 160 (613)
+||+|||+|+++|++||||++.||+ +|+|++||||+||||+|||||||||||+.
T Consensus 81 ~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~------------------------- 135 (331)
T PF00493_consen 81 APRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE------------------------- 135 (331)
T ss_dssp -SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C-------------------------
T ss_pred CCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccc-------------------------
Confidence 9999999999999999999999999 99999999999999999999999999998
Q ss_pred cccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccc
Q psy2640 161 ITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRF 240 (613)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRF 240 (613)
.++.+||||||||+|||+|||++++||+||+|+||+||.+|+||+.+++.+|+++|++|||||
T Consensus 136 -----------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRF 198 (331)
T PF00493_consen 136 -----------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRF 198 (331)
T ss_dssp -----------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-
T ss_pred -----------------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhc
Confidence 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHH
Q psy2640 241 DLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLA 320 (613)
Q Consensus 241 DLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~ 320 (613)
||||++.|.++++.|..+++||+..|...... .+. .. ......++.++|++||+
T Consensus 199 DLif~l~D~~d~~~D~~la~~il~~~~~~~~~------------------~~~----~~----~~~~~~~~~~~lr~yI~ 252 (331)
T PF00493_consen 199 DLIFLLRDKPDEEEDERLAEHILDSHRNGKKS------------------KEK----KI----KKNDKPISEDLLRKYIA 252 (331)
T ss_dssp SEEECC--TTT-HHHHHHHHHHHTTT---S----------------------------------SSS-TT-HCCCHHHHH
T ss_pred CEEEEeccccccccccccceEEEecccccccc------------------ccc----cc----cccCCccCHHHHHHHHH
Confidence 99999999999999999999999998532210 000 00 01113689999999999
Q ss_pred HHhhhcCCCcCChHHHHHHHHHHHHHHhccC-CCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC---Cccchhh
Q psy2640 321 YARKYVSKPELSTEAALLLQEFYLNLRKHHH-SVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC---PSIFGHE 395 (613)
Q Consensus 321 ~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~-~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~---~~I~~~~ 395 (613)
|||+++ +|.||+||.+.|.+||+++|+... +....++|+|+||+|||||||| ||+++++.|+++|| +.+|..+
T Consensus 253 yar~~~-~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~-AKl~lr~~V~~~Dv~~Ai~L~~~S 329 (331)
T PF00493_consen 253 YARQNI-HPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAH-AKLRLRDEVTEEDVEEAIRLFEES 329 (331)
T ss_dssp HHHHHC---EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHH-HHCTTSSECSHHHHHHHHHHHHHH
T ss_pred HHHhhc-ccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHH-HHHhccCceeHHHHHHHHHHHHhh
Confidence 999888 999999999999999999999762 3567899999999999999999 99999999999999 4555444
No 10
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=3.4e-54 Score=480.56 Aligned_cols=306 Identities=37% Similarity=0.542 Sum_probs=274.2
Q ss_pred cchHHHHHHHHHHhhCccccchH--HhhhccchhhhHHHHhhhhhcccchhhhhhh----------ccCCchhhhhHHHH
Q psy2640 10 PTDTKIKSCLDFIERHNHLYNVA--EIEERRCYLVDIKVLMNDQIFNDQWKTFLQN----------LSNEPQHTINCLGL 77 (613)
Q Consensus 10 ~~~~~i~~~e~~~~~~~~lYd~~--~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~----------l~~~p~~~~~~l~l 77 (613)
...+-++.|.+ |.++|++|+.. +|+|.++|++++|+|+++++|||+.+...++ |.|+|+..+..|.-
T Consensus 176 ~~~~~~~~i~~-~~~~~~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar 254 (509)
T smart00350 176 LSDEEEEEIRK-LSKDPDIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLK 254 (509)
T ss_pred CCHHHHHHHHH-HhcCHHHHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHH
Confidence 34566778877 88999999965 8999999999999999999999998766543 78999999987777
Q ss_pred hhh-hhcceEEEecccccccCceEEEEeeC-CCCeeecCceeecccCceeccccccCCCcccccccchhccccccccccc
Q psy2640 78 AMH-HYIISVYVCGNTSTTSGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQ 155 (613)
Q Consensus 78 a~~-~~~r~~~~~g~~~s~~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~ 155 (613)
++| ..||++|++|++++.+|||+++.+++ +|+|.+++|++++||+|+||||||++|+.
T Consensus 255 ~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~-------------------- 314 (509)
T smart00350 255 YVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDD-------------------- 314 (509)
T ss_pred HHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCH--------------------
Confidence 666 46899999999999999999999999 99999999999999999999999999998
Q ss_pred ccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhcccccc
Q psy2640 156 YTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQA 235 (613)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~ 235 (613)
.++.+|+|+||||+++|+|+|+.++||++|+|+||+||+.|+||+.+++.+|+.+|++
T Consensus 315 ----------------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~ 372 (509)
T smart00350 315 ----------------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAP 372 (509)
T ss_pred ----------------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChH
Confidence 5899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHH
Q psy2640 236 LLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLL 315 (613)
Q Consensus 236 llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lL 315 (613)
|||||||+|++.|.++++.|..|++|++..|....+. . .......++.++|
T Consensus 373 lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~---------------~--------------~~~~~~~~~~~~l 423 (509)
T smart00350 373 ILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPE---------------P--------------DEADEVPISQEFL 423 (509)
T ss_pred HhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCcc---------------c--------------cccccccCCHHHH
Confidence 9999999999999999999999999999887421100 0 0011235899999
Q ss_pred HHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCC---CCcccchHHHHHHHHHHHhhhhcchhhhhhccccCC
Q psy2640 316 HKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSV---DATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCP 389 (613)
Q Consensus 316 rkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~---~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~ 389 (613)
++||+|||+++ +|.+|+++.++|.++|+++|+..... ..+++|+|+||+|+|||+|+ |+++++++|+.+|+.
T Consensus 424 ~~yi~~ar~~~-~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~-A~l~~r~~V~~~Dv~ 498 (509)
T smart00350 424 RKYIAYAREKI-KPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAH-AKMRLSDVVEEADVE 498 (509)
T ss_pred HHHHHHHHhcC-CCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHH-HHHcCCCccCHHHHH
Confidence 99999999988 89999999999999999999865433 46889999999999999999 999999999999993
No 11
>KOG0480|consensus
Probab=100.00 E-value=5.6e-47 Score=410.60 Aligned_cols=483 Identities=21% Similarity=0.277 Sum_probs=325.6
Q ss_pred cchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhhhhhcceEEEecccccccCceEEEEeeCCCCeeecCcee
Q psy2640 38 RCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHYIISVYVCGNTSTTSGLTVTLSREGGGDFALEAGAL 117 (613)
Q Consensus 38 ~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~~~~~r~~~~~g~~~s~~gLta~~~~~~~g~~~le~Gal 117 (613)
+...+|++..-.- -...+...|..+|.+.+-||..|.|.+... |.-..+++
T Consensus 58 ~tl~vd~~~l~~~-----~~~~la~~l~~~~~r~~p~m~~av~~~l~d------------------------~~~~~~~~ 108 (764)
T KOG0480|consen 58 NTLLVDFQHLSKQ-----YNQNLATALEENYYRVLPCMCRAVHKVLKD------------------------WSTNSGAL 108 (764)
T ss_pred ceEEEEHHHHHhh-----hhHHHHHHHHHhhhhhHHHHHHHHHHHHHc------------------------cccccccc
Confidence 6677777765442 345666778899999999999999998743 11111111
Q ss_pred eccc-CceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEec
Q psy2640 118 VLAD-QGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAK 196 (613)
Q Consensus 118 vLad-~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~k 196 (613)
+.-- =-++=..+.-++.+ .+.+++..+-+++|||+| ++.+||+++.+.|.|.+|+..+.-+..|.++|-+.
T Consensus 109 ~~~~~v~f~nlp~~~~ird-lra~~iG~Lv~isGtVvR-------ts~VrPelt~~~F~C~~C~t~i~~v~q~fkYt~Pt 180 (764)
T KOG0480|consen 109 VKKIYVRFYNLPTRHKIRD-LRAARIGKLVRISGTVVR-------TSPVRPELTKMTFLCEKCGTVIRNVEQQFKYTEPT 180 (764)
T ss_pred ceeEEEEEecccccccccc-ccHhhhcceEEEEEEEEE-------eecccceeeeeEEEHhhCCCeeccchhcCccCCCc
Confidence 1100 00111223333332 345677777799999999 89999999999999999999999999999999999
Q ss_pred ccceeecCCcceeecccCCCCCCCCCCcc-chhhcc-ccccccccccEEEE----ecCCCChhhhHHHHHHHHHhhc---
Q psy2640 197 ASVVCSLPARTSVIAAANPVGGHYNRAKT-VAENLR-MGQALLSRFDLVFI----LLDNPDEHLDTLLSEHVMASLS--- 267 (613)
Q Consensus 197 agi~~~l~ar~svlAaaNP~~g~~~~~~~-~~e~i~-l~~~llsRFDLi~~----l~d~~~~~~d~~la~~Il~~~~--- 267 (613)
.|-...|..|-++.+-.|. ....||++. ++|+.. +|+.=+.|= +=++ +++.+.|++-..+...++-...
T Consensus 181 ~C~np~C~nrr~f~l~~~~-s~f~D~QkIrIQE~~~E~p~GsiPRt-vdviLr~dlVe~~~pGD~v~~TGiliVvpdv~~ 258 (764)
T KOG0480|consen 181 KCPNPVCSNRRSFTLDRSS-SRFLDWQKIRIQELQAEIPRGSIPRT-VDVILRGDLVETAQPGDKVDITGILIVVPDVSQ 258 (764)
T ss_pred cCCCccccCCceeeeeccc-ceeeeeeeeehhhhhhhCCCCCCCce-eEEEEhhhhHhhcCCCCEEEEEEEEEEecChHH
Confidence 9988888886666555554 345688888 788752 444333332 2222 2333333332222221111110
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHH
Q psy2640 268 --GFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLN 345 (613)
Q Consensus 268 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~ 345 (613)
+... +..+. . +....... .....+...-+.-=++|...++ .|....|....-- |
T Consensus 259 l~~pgs-k~~n~--r-------~~~~~~~i---------~~lkal~Vrdl~yq~aFlac~~-~~~~~~ee~~~~~--~-- 314 (764)
T KOG0480|consen 259 LGGPGS-KAENN--R-------GGETGDGI---------TGLKALGVRDLTYQLAFLACHV-QSTLAVEEDDEED--M-- 314 (764)
T ss_pred hcCCcc-ccccc--c-------CCCcccce---------eeehhcccccchhhhhHhhhhc-ccccccchhhhHH--H--
Confidence 0000 00000 0 00000000 0011122233333345555545 5554433222110 0
Q ss_pred HHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCccchhhHHHHHHHHhhhCCcccCC----CCCCCcce
Q psy2640 346 LRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHSTN----GSRGDAHV 421 (613)
Q Consensus 346 lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~~~~k~gl~l~l~GG~~~~~----~~rg~idi 421 (613)
...+|.+++..+-+++ ...+++..++.|.+|.||||+.+|+|++|++|||+++.. +.||+||+
T Consensus 315 ---------~~~~s~~e~~~~~em~----~~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv 381 (764)
T KOG0480|consen 315 ---------LNSMSSEEFAEIREMS----KDENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINV 381 (764)
T ss_pred ---------hhhccHHHHHHHHHHh----cCchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceE
Confidence 1235777888887776 567999999999999999999999999999999998854 36999999
Q ss_pred eecCCCCCCcchhhhHHHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHHHHH--HHHHHHhhCCcEEecCCce
Q psy2640 422 LIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFF--TFLTSLNDQGFLLKKGKQL 499 (613)
Q Consensus 422 l~vgdpGtgKSq~l~~~~~~~~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~~~~--~~i~~L~~~G~i~~~g~~~ 499 (613)
|+||||||||||+|++. ..+.+++.+++++. .+.+|++..-+. +--+-.-+.|.++...+|+
T Consensus 382 ~iVGDPgt~KSQfLk~v-------~~fsPR~vYtsGka---------SSaAGLTaaVvkD~esgdf~iEAGALmLADnGI 445 (764)
T KOG0480|consen 382 CIVGDPGTGKSQFLKAV-------CAFSPRSVYTSGKA---------SSAAGLTAAVVKDEESGDFTIEAGALMLADNGI 445 (764)
T ss_pred EEeCCCCccHHHHHHHH-------hccCCcceEecCcc---------cccccceEEEEecCCCCceeeecCcEEEccCce
Confidence 99999999999997654 34455555554431 223455443221 1112244567777777888
Q ss_pred EEEe--------------chhhHHHHHhhhhhhcc-------------------ccccchhhhcccchhhhccccccccc
Q psy2640 500 YQLM--------------SAKKFISVLQKKAEVQS-------------------RSVFTVTELKQLATSANISVDNFFTF 546 (613)
Q Consensus 500 ~~l~--------------~~~~~~~i~~~k~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~ 546 (613)
|++. ++|+||+|+.+|||+.+ |...++.+|.+++++++||||+||++
T Consensus 446 CCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiL 525 (764)
T KOG0480|consen 446 CCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFIL 525 (764)
T ss_pred EEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEE
Confidence 8754 88999999999998666 66779999999999999999999999
Q ss_pred cccCch------------------------------------------------------h-------------------
Q psy2640 547 LTSLND------------------------------------------------------Q------------------- 553 (613)
Q Consensus 547 ~~~~~~------------------------------------------------------~------------------- 553 (613)
+|..|+ .
T Consensus 526 lD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~ 605 (764)
T KOG0480|consen 526 LDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSY 605 (764)
T ss_pred ecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccc
Confidence 997666 2
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccChhHHHHHHHHhhhcchhhhcCCCCCccccCCCC
Q psy2640 554 GFLLKKGKQLYQLMSARAKCELREEASKQDAQDVIDIMKWSLIDTSLNGGGGIDFTRSQH 613 (613)
Q Consensus 554 ~~y~~l~esLiRLseArAkl~lre~vt~~Da~~vv~im~~s~~~~~~de~g~~~~~~~~~ 613 (613)
+++++|+|||||||||+||+|+|++||++||.+|++||++|++.+..||.|..|| +++|
T Consensus 606 ~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~Siv~ve~ddi~~~d~-~~~~ 664 (764)
T KOG0480|consen 606 RITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKKSIVRVEGDDIELDDN-DGEN 664 (764)
T ss_pred cccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhheeecccccccccc-cccc
Confidence 4566667999999999999999999999999999999999999999999999997 6654
No 12
>KOG0478|consensus
Probab=99.96 E-value=1.2e-30 Score=285.75 Aligned_cols=233 Identities=25% Similarity=0.387 Sum_probs=183.7
Q ss_pred cchHHHHHHHHHHHhhhhcchhhhhhccccCCccchhhHHHHHHHHhhhCCcccCCC----CCCCcceeecCCCCCCcch
Q psy2640 358 VTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHSTNG----SRGDAHVLIVGDPGLGKSQ 433 (613)
Q Consensus 358 iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~~~~k~gl~l~l~GG~~~~~~----~rg~idil~vgdpGtgKSq 433 (613)
+++..+|.|..++ ++++.++.+..|.||+||+++.+|+|++|+||||+.+.+. .||+||+|++|||||||||
T Consensus 402 ~~~~~~e~i~els----krpdiy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSq 477 (804)
T KOG0478|consen 402 RRIEDLEKIQELS----KRPDIYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQ 477 (804)
T ss_pred ccHHHHHHHHHHh----cCccHHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHH
Confidence 3445599999888 8999999999999999999999999999999999987643 5899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCceEEEe----------
Q psy2640 434 MLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLM---------- 503 (613)
Q Consensus 434 ~l~~~~~~~~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l~---------- 503 (613)
+||+|.+ |.++..++++++-+.--+ .++++.+. +-=+..-+.|.++..++|+|++.
T Consensus 478 lLqyv~~-------l~pRg~yTSGkGsSavGL-----TayVtrd~--dtkqlVLesGALVLSD~GiCCIDEFDKM~dStr 543 (804)
T KOG0478|consen 478 LLQYCHR-------LLPRGVYTSGKGSSAVGL-----TAYVTKDP--DTRQLVLESGALVLSDNGICCIDEFDKMSDSTR 543 (804)
T ss_pred HHHHHHH-------hCCcceeecCCccchhcc-----eeeEEecC--ccceeeeecCcEEEcCCceEEchhhhhhhHHHH
Confidence 9776654 455555555543221111 11111100 00011346678888888888844
Q ss_pred ----chhhHHHHHhhhhhhcc-------------------ccccchhhhcccchhhhccccccccccccCch--------
Q psy2640 504 ----SAKKFISVLQKKAEVQS-------------------RSVFTVTELKQLATSANISVDNFFTFLTSLND-------- 552 (613)
Q Consensus 504 ----~~~~~~~i~~~k~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------- 552 (613)
+.|+||+++.+|||+.+ |++.++.+|+.|++.|++|||++|+++|+.++
T Consensus 544 SvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~ 623 (804)
T KOG0478|consen 544 SVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLAD 623 (804)
T ss_pred HHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHH
Confidence 88999999999999665 77889999999999999999999999985555
Q ss_pred --------------------------------------------------------------hHHHHHHHHHHHHHHHhh
Q psy2640 553 --------------------------------------------------------------QGFLLKKGKQLYQLMSAR 570 (613)
Q Consensus 553 --------------------------------------------------------------~~~y~~l~esLiRLseAr 570 (613)
..-|.+|.||||||+|||
T Consensus 624 HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEah 703 (804)
T KOG0478|consen 624 HIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAH 703 (804)
T ss_pred HHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHH
Confidence 235666679999999999
Q ss_pred cccccccccChhHHHHHHHHhhhcchhhhcC-CCCCccc
Q psy2640 571 AKCELREEASKQDAQDVIDIMKWSLIDTSLN-GGGGIDF 608 (613)
Q Consensus 571 Akl~lre~vt~~Da~~vv~im~~s~~~~~~d-e~g~~~~ 608 (613)
||+.|.+.|-..|+++|+.+.+..|-..-.| -.|.+|+
T Consensus 704 ak~r~s~~ve~~dV~eA~~l~R~aL~~~a~d~~tg~vd~ 742 (804)
T KOG0478|consen 704 AKMRLSNRVEEIDVEEAVRLLREALKQSATDPATGKVDM 742 (804)
T ss_pred HHhhcccccchhhHHHHHHHHHHHhcccCCCCCCCceee
Confidence 9999999999999999999999999886666 4555554
No 13
>KOG0477|consensus
Probab=99.95 E-value=9e-30 Score=275.64 Aligned_cols=368 Identities=22% Similarity=0.276 Sum_probs=249.2
Q ss_pred cccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCc-ceeecccCCCCCCCCCCcc
Q psy2640 147 AMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPAR-TSVIAAANPVGGHYNRAKT 225 (613)
Q Consensus 147 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar-~svlAaaNP~~g~~~~~~~ 225 (613)
-+.|+|+| +..+.|.-...-+.|.+|. ..+-+.-|..-+.-|-|....|.++ ++.+..-+-++.+|.+ .+
T Consensus 273 r~~GvVtr-------~tgV~pql~~vky~C~KC~-~vlgPF~qs~n~evkp~~C~~cqSkGpf~vn~e~TvyrnYQr-it 343 (854)
T KOG0477|consen 273 RTSGVVTR-------RTGVFPQLSVVKYDCLKCG-FVLGPFVQSSNSEVKPGSCPECQSKGPFEVNVEETVYRNYQR-IT 343 (854)
T ss_pred EeeeEEEe-------cceeehhhHHHhhhHHhhC-CccCceeeccCceeCCCCCccccCCCCCccchhhhhhcccce-ee
Confidence 56788988 8889998888888899998 5556677777666666655555444 2444444445555543 34
Q ss_pred chhh-cccccccccccc---EEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCC
Q psy2640 226 VAEN-LRMGQALLSRFD---LVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKP 301 (613)
Q Consensus 226 ~~e~-i~l~~~llsRFD---Li~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 301 (613)
++|+ ..+|+.-|.|=- |.-.|+|.+.++++..++..-.+.+.+. +. .
T Consensus 344 iQEspg~v~~GrlPRsk~vILl~DLvD~~kpGdEievTGIy~nn~d~s-------------------------LN----~ 394 (854)
T KOG0477|consen 344 IQESPGTVPAGRLPRSKEVILLADLVDSCKPGDEIEVTGIYTNNFDGS-------------------------LN----T 394 (854)
T ss_pred eccCCCcCCCCccccchhheehhhhhhhcCCCcceEEeeeeccccccc-------------------------cc----c
Confidence 5665 456666665543 3334577887777777655433222110 00 0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhh
Q psy2640 302 GPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFK 381 (613)
Q Consensus 302 ~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~ 381 (613)
..| +|.+-.- |..-++. +..........|..+...|..+++ ...+.+
T Consensus 395 kng-----------------------Fpvfatv----i~ANhV~--~k~~~~~~~~ltded~k~i~~lsk----d~~i~~ 441 (854)
T KOG0477|consen 395 KNG-----------------------FPVFATV----IEANHVV--KKDGKFDVDELTDEDFKEIWELSK----DPPIKE 441 (854)
T ss_pred cCC-----------------------cccccee----heehhhh--hhccccchhHHhHHHHHHHHHHhc----CccHHH
Confidence 000 1211110 0000111 111111233467778888888874 568888
Q ss_pred hhccccCCccchhhHHHHHHHHhhhCCcccCCC----CCCCcceeecCCCCCCcchhhhHHHHHHHHHHHHHHHhhhcCC
Q psy2640 382 LLVNSLCPSIFGHEMVKAGLLLALFGGCHSTNG----SRGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSR 457 (613)
Q Consensus 382 ~v~~sd~~~I~~~~~~k~gl~l~l~GG~~~~~~----~rg~idil~vgdpGtgKSq~l~~~~~~~~~~~~l~~~~~~~~~ 457 (613)
.|..|.||.||||..+|.|+++.+|||++++++ .||+||+|++|||||+|||.| +|++.+.+++..+
T Consensus 442 rIiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFL-------KY~eK~s~RAV~t-- 512 (854)
T KOG0477|consen 442 RIIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFL-------KYAEKTSPRAVFT-- 512 (854)
T ss_pred HHHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHH-------HHHHhcCcceeEe--
Confidence 899999999999999999999999999998765 599999999999999999995 4555555555433
Q ss_pred ccccHHHHHHHHHhCCCCHHHHHH--HHHHHhhCCcEEecCCceEEE--------------echhhHHHHHhhhhhhcc-
Q psy2640 458 SVFTVTELKQLATSANISVDNFFT--FLTSLNDQGFLLKKGKQLYQL--------------MSAKKFISVLQKKAEVQS- 520 (613)
Q Consensus 458 ~~~t~~el~~~a~~~gi~~~~~~~--~i~~L~~~G~i~~~g~~~~~l--------------~~~~~~~~i~~~k~~~~~- 520 (613)
.+. -|+..|++...... -=++.-+.|.++...+|+|.+ +++|+||+||+.|||++.
T Consensus 513 ----TGq---GASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVts 585 (854)
T KOG0477|consen 513 ----TGQ---GASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTS 585 (854)
T ss_pred ----ccC---CccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHH
Confidence 222 24455665444433 234455677777777777774 499999999999999554
Q ss_pred ------------------ccccchhhhcccchhhhccccccccccccCch------------------------------
Q psy2640 521 ------------------RSVFTVTELKQLATSANISVDNFFTFLTSLND------------------------------ 552 (613)
Q Consensus 521 ------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------------------------ 552 (613)
++.+++.+|+.|+++.+||||....--|..++
T Consensus 586 LqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~ 665 (854)
T KOG0477|consen 586 LQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEP 665 (854)
T ss_pred HHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCccccc
Confidence 66789999999999999999986654442111
Q ss_pred -------------------------------------hHHHHHHH----------------HHHHHHHHhhccccccccc
Q psy2640 553 -------------------------------------QGFLLKKG----------------KQLYQLMSARAKCELREEA 579 (613)
Q Consensus 553 -------------------------------------~~~y~~l~----------------esLiRLseArAkl~lre~v 579 (613)
...|..|| ||+||++||||||+||+.|
T Consensus 666 ~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V 745 (854)
T KOG0477|consen 666 QMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYV 745 (854)
T ss_pred ccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 23444443 8899999999999999999
Q ss_pred ChhHHHHHHHHhhhcchhhhcC
Q psy2640 580 SKQDAQDVIDIMKWSLIDTSLN 601 (613)
Q Consensus 580 t~~Da~~vv~im~~s~~~~~~d 601 (613)
+.+|+..||.+|..|+.+++.+
T Consensus 746 ~~~d~~~AI~v~ldSfi~aQk~ 767 (854)
T KOG0477|consen 746 TEEDVDMAIRVMLDSFISAQKF 767 (854)
T ss_pred cHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888876543
No 14
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.8e-29 Score=284.18 Aligned_cols=234 Identities=26% Similarity=0.433 Sum_probs=187.0
Q ss_pred cccchHHHHHHHHHHHhhhhcchhhhhhccccCCccchhhHHHHHHHHhhhCCcccCCC----CCCCcceeecCCCCCCc
Q psy2640 356 TPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHSTNG----SRGDAHVLIVGDPGLGK 431 (613)
Q Consensus 356 ~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~~~~k~gl~l~l~GG~~~~~~----~rg~idil~vgdpGtgK 431 (613)
..+|+++.+.|.+|| .+.++++.+..|.+|+||||+.+|.|++|+||||+.+..+ .||+||+|++||||++|
T Consensus 257 ~~~t~ed~e~i~ela----k~~~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaK 332 (682)
T COG1241 257 VEITEEDEEEIKELA----KRPDIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAK 332 (682)
T ss_pred ccCCHHHHHHHHHHh----cCCcHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhH
Confidence 457999999999998 5789999999999999999999999999999999988543 59999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHHHHHHHH--HHHhhCCcEEecCCceEEEe------
Q psy2640 432 SQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFL--TSLNDQGFLLKKGKQLYQLM------ 503 (613)
Q Consensus 432 Sq~l~~~~~~~~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~~~~~~i--~~L~~~G~i~~~g~~~~~l~------ 503 (613)
||+| +++..+.+++.++++.+ ++.+|++..-+++-. +..-+.|.+....+|++++.
T Consensus 333 SqlL-------k~v~~~aPr~vytsgkg---------ss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~ 396 (682)
T COG1241 333 SQLL-------KYVAKLAPRGVYTSGKG---------SSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN 396 (682)
T ss_pred HHHH-------HHHHhhCCceEEEcccc---------ccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC
Confidence 9995 44444555554444332 334555543332211 33446677777788888854
Q ss_pred --------chhhHHHHHhhhhhhcc-------------------ccccchhhhcccchhhhccccccccccccCch----
Q psy2640 504 --------SAKKFISVLQKKAEVQS-------------------RSVFTVTELKQLATSANISVDNFFTFLTSLND---- 552 (613)
Q Consensus 504 --------~~~~~~~i~~~k~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---- 552 (613)
++|+||+|+++|||+.. ++..++.+|+.|+++++||||+.|...|.++.
T Consensus 397 ~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~ 476 (682)
T COG1241 397 EEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDE 476 (682)
T ss_pred hHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchH
Confidence 88899999999888443 55668899999999999999999988862111
Q ss_pred ----------------------------------------------------------hHHHHHHH--------------
Q psy2640 553 ----------------------------------------------------------QGFLLKKG-------------- 560 (613)
Q Consensus 553 ----------------------------------------------------------~~~y~~l~-------------- 560 (613)
.+||+.+|
T Consensus 477 ~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~pi 556 (682)
T COG1241 477 EIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPI 556 (682)
T ss_pred HHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccc
Confidence 45666655
Q ss_pred -----HHHHHHHHhhcccccccccChhHHHHHHHHhhhcchhhhcC-CCCCcccc
Q psy2640 561 -----KQLYQLMSARAKCELREEASKQDAQDVIDIMKWSLIDTSLN-GGGGIDFT 609 (613)
Q Consensus 561 -----esLiRLseArAkl~lre~vt~~Da~~vv~im~~s~~~~~~d-e~g~~~~~ 609 (613)
||+||||||||||.|++.|+++||.+|+.||++|+.+...| +.|.+|..
T Consensus 557 T~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l~~v~~dp~~g~~d~~ 611 (682)
T COG1241 557 TARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSLKTVAVDPEKGKIDID 611 (682)
T ss_pred cHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCccCCceehh
Confidence 56999999999999999999999999999999999999998 88888754
No 15
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.93 E-value=2.4e-26 Score=264.29 Aligned_cols=243 Identities=23% Similarity=0.355 Sum_probs=174.3
Q ss_pred cccchHHHHHHHHHHHhhhhcchhhhhhccccCCccchhhHHHHHHHHhhhCCcccC-------------CCCCCCccee
Q psy2640 356 TPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHST-------------NGSRGDAHVL 422 (613)
Q Consensus 356 ~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~~~~k~gl~l~l~GG~~~~-------------~~~rg~idil 422 (613)
..+|+.+.+.|.+|| .+.++++.+..+.||.|+||+.+|.|+++++|||+++. ...||++|+|
T Consensus 421 ~~~t~ed~~~I~~ls----~~p~i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVL 496 (915)
T PTZ00111 421 NDFSDLQVYKILELS----RNPMIYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVL 496 (915)
T ss_pred ccCCHHHHHHHHHHh----cCHHHHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEE
Confidence 458999999999998 57899999999999999999999999999999999652 2359999999
Q ss_pred ecCCCCCCcchhhhHHHHHHHHHHHHHHHhhhcCCccccHHHHH--------------------HHHHhCCCCHHHH---
Q psy2640 423 IVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELK--------------------QLATSANISVDNF--- 479 (613)
Q Consensus 423 ~vgdpGtgKSq~l~~~~~~~~~~~~l~~~~~~~~~~~~t~~el~--------------------~~a~~~gi~~~~~--- 479 (613)
++|+||||||++++++ ..+.++..++++..++.-.+. .+|.+.-++.++|
T Consensus 497 LvGDPGTGKSqLAr~I-------h~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkm 569 (915)
T PTZ00111 497 LCGDPGTAKSQLLHYT-------HLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKC 569 (915)
T ss_pred EeCCCCccHHHHHHHH-------HHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhC
Confidence 9999999999995443 333333332222222110000 0111111233333
Q ss_pred -----HHHHHHHhhCCcEEecCCceEEEechhhHHHHHhhhhhhccccccchhhhcccchhhhccccccccccccC----
Q psy2640 480 -----FTFLTSLNDQGFLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSL---- 550 (613)
Q Consensus 480 -----~~~i~~L~~~G~i~~~g~~~~~l~~~~~~~~i~~~k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---- 550 (613)
..+++.|+++.+.+.+++..+.+..++.++...+++- ..+++..++.+|..|++++++|||++|.++|.+
T Consensus 570 s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~-gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~ 648 (915)
T PTZ00111 570 HNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPIN-SRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDT 648 (915)
T ss_pred CHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcc-cccCcccCcccccCCChHHhhhhcEEEEecCCCChHH
Confidence 2355555555555555555555555555555555442 344567788888999999999998888776510
Q ss_pred ------------------------------------------------ch---------------------------hHH
Q psy2640 551 ------------------------------------------------ND---------------------------QGF 555 (613)
Q Consensus 551 ------------------------------------------------~~---------------------------~~~ 555 (613)
.+ .+|
T Consensus 649 D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~ 728 (915)
T PTZ00111 649 DQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITRE 728 (915)
T ss_pred HHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 01 445
Q ss_pred HHHHH----------------------------------------HHHHHHHHhhcccccccccChhHHHHHHHHhhhcc
Q psy2640 556 LLKKG----------------------------------------KQLYQLMSARAKCELREEASKQDAQDVIDIMKWSL 595 (613)
Q Consensus 556 y~~l~----------------------------------------esLiRLseArAkl~lre~vt~~Da~~vv~im~~s~ 595 (613)
|++|| |||||||||||||+|+++||.+||++||.||+.||
T Consensus 729 Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~sl 808 (915)
T PTZ00111 729 YVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSST 808 (915)
T ss_pred HHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHHHH
Confidence 55544 56999999999999999999999999999999999
Q ss_pred hhhhcC-CCCCccccC
Q psy2640 596 IDTSLN-GGGGIDFTR 610 (613)
Q Consensus 596 ~~~~~d-e~g~~~~~~ 610 (613)
.+...| |.|.+|+.+
T Consensus 809 ~~~~~DpetG~iD~d~ 824 (915)
T PTZ00111 809 FQSLVDPTTGKIDFDQ 824 (915)
T ss_pred hhhcccccCCccccee
Confidence 999999 899999964
No 16
>KOG0482|consensus
Probab=99.92 E-value=1.3e-25 Score=239.02 Aligned_cols=245 Identities=21% Similarity=0.314 Sum_probs=180.5
Q ss_pred HHHHHHHHHHh---ccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCccchhhHHHHHHHHhhhCCcccC--
Q psy2640 338 LLQEFYLNLRK---HHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHST-- 412 (613)
Q Consensus 338 ~L~~~Yv~lR~---~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~~~~k~gl~l~l~GG~~~~-- 412 (613)
.|.+-|++-.. ...+.+.+..+...-+.+.++. +..++++.+..|.||+||||+.+|+++++.++||+.+.
T Consensus 292 LladtYLeAh~v~~~nk~~~~~~~~~~~~~~~~~~~----~~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~ 367 (721)
T KOG0482|consen 292 LLADTYLEAHRVVQINKKYDNIEKTGELEPEELELI----AEGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPG 367 (721)
T ss_pred hHHHHHHHHhhhhhhccccccccccccccHHHHHHh----hcccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCC
Confidence 45555665441 1222233333333334444444 78899999999999999999999999999999999764
Q ss_pred CC--CCCCcceeecCCCCCCcchhhhHHHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHHHHHHHH--HHHhh
Q psy2640 413 NG--SRGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFL--TSLND 488 (613)
Q Consensus 413 ~~--~rg~idil~vgdpGtgKSq~l~~~~~~~~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~~~~~~i--~~L~~ 488 (613)
|+ .||+||+|++||||..|||+|+++ ..+.+++.++.+++- +..|++..-..+-+ +.--+
T Consensus 368 dGMKIRGdINicLmGDPGVAKSQLLkyi-------~rlapRgvYTTGrGS---------SGVGLTAAVmkDpvTgEM~LE 431 (721)
T KOG0482|consen 368 DGMKIRGDINICLMGDPGVAKSQLLKYI-------SRLAPRGVYTTGRGS---------SGVGLTAAVMKDPVTGEMVLE 431 (721)
T ss_pred CCceeecceeEEecCCCchhHHHHHHHH-------HhcCcccceecCCCC---------CccccchhhhcCCCCCeeEec
Confidence 44 599999999999999999996554 445666555433211 11222221111000 01225
Q ss_pred CCcEEecCCceEEEe--------------chhhHHHHHhhhhhhcc-------------------ccccchhhhcccchh
Q psy2640 489 QGFLLKKGKQLYQLM--------------SAKKFISVLQKKAEVQS-------------------RSVFTVTELKQLATS 535 (613)
Q Consensus 489 ~G~i~~~g~~~~~l~--------------~~~~~~~i~~~k~~~~~-------------------~~~~~~~~~~~l~~~ 535 (613)
+|.+....+|+|++. +-|+||+||++|||+.. |+..++..|+.|..+
T Consensus 432 GGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaA 511 (721)
T KOG0482|consen 432 GGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAA 511 (721)
T ss_pred cceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHH
Confidence 577777777888854 88999999999999655 677788999999999
Q ss_pred hhccccccccccccCch------------------------------------------------------hHHHHHHHH
Q psy2640 536 ANISVDNFFTFLTSLND------------------------------------------------------QGFLLKKGK 561 (613)
Q Consensus 536 ~~~~~~~~~~~~~~~~~------------------------------------------------------~~~y~~l~e 561 (613)
|+||||..++++|+++- ..-|+++|+
T Consensus 512 LLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rr 591 (721)
T KOG0482|consen 512 LLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRR 591 (721)
T ss_pred HHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999974332 567888873
Q ss_pred H-----------------HHHHHHhhcccccccccChhHHHHHHHHhhhcchhhhcCC
Q psy2640 562 Q-----------------LYQLMSARAKCELREEASKQDAQDVIDIMKWSLIDTSLNG 602 (613)
Q Consensus 562 s-----------------LiRLseArAkl~lre~vt~~Da~~vv~im~~s~~~~~~de 602 (613)
. |+||+.|+|||.|.+.|..+|+.+|+.+|+.|-...|-|+
T Consensus 592 ea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~sK~sL~~~~ 649 (721)
T KOG0482|consen 592 EARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMSKDSLYQDD 649 (721)
T ss_pred HhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhhhccccccc
Confidence 3 9999999999999999999999999999999999988774
No 17
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.92 E-value=1.1e-27 Score=254.08 Aligned_cols=220 Identities=28% Similarity=0.431 Sum_probs=143.8
Q ss_pred HHHHHHHHHhhhhcchhhhhhccccCCccchhhHHHHHHHHhhhCCcccCCC----CCCCcceeecCCCCCCcchhhhHH
Q psy2640 363 LESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHSTNG----SRGDAHVLIVGDPGLGKSQMLHAC 438 (613)
Q Consensus 363 LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~~~~k~gl~l~l~GG~~~~~~----~rg~idil~vgdpGtgKSq~l~~~ 438 (613)
.|.|.+|+ .+.++++.+..+.||.|+|++.+|.|++|+++||+.+..+ .||++|+|++||||+||||+|+++
T Consensus 2 ~~~i~~l~----~~~~~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~ 77 (331)
T PF00493_consen 2 EEKIKELS----KKPNIFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYV 77 (331)
T ss_dssp HHHHHCCC----CTTTHHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCC
T ss_pred HHHHHHHh----cCCcHHHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHH
Confidence 45666666 5679999999999999999999999999999999987644 499999999999999999996543
Q ss_pred HHHHHHHHHHHHHhhhcCCc-----cccH---------------HHHHHHHHhCCCCHHHH--------HHHHHHHhhCC
Q psy2640 439 CAAKKFISVLQKKAEVQSRS-----VFTV---------------TELKQLATSANISVDNF--------FTFLTSLNDQG 490 (613)
Q Consensus 439 ~~~~~~~~~l~~~~~~~~~~-----~~t~---------------~el~~~a~~~gi~~~~~--------~~~i~~L~~~G 490 (613)
. .+.+++.++++. ++|. +. ..+|++.-|++|+| ..+++.|++|.
T Consensus 78 ~-------~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGa-lvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~ 149 (331)
T PF00493_consen 78 A-------KLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGA-LVLADGGICCIDEFDKMKEDDRDALHEAMEQQT 149 (331)
T ss_dssp C-------CT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-H-HHHCTTSEEEECTTTT--CHHHHHHHHHHHCSC
T ss_pred H-------hhCCceEEECCCCcccCCccceeccccccceeEEeCCc-hhcccCceeeecccccccchHHHHHHHHHHcCe
Confidence 3 333433322211 1110 11 11233211233333 45667777777
Q ss_pred cEEecCCceEEEechhhHHHHHhhhhhhccccccchhhhcccchhhhccccccccccccCch------------------
Q psy2640 491 FLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLND------------------ 552 (613)
Q Consensus 491 ~i~~~g~~~~~l~~~~~~~~i~~~k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------------ 552 (613)
..+.+++-++.+.++.......+++. ..+++..++.+|..+++++++|||++|.+.|..++
T Consensus 150 isi~kagi~~~l~ar~svlaa~NP~~-g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~ 228 (331)
T PF00493_consen 150 ISIAKAGIVTTLNARCSVLAAANPKF-GRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGK 228 (331)
T ss_dssp EEECTSSSEEEEE---EEEEEE--TT---S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S
T ss_pred eccchhhhcccccchhhhHHHHhhhh-hhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecccccc
Confidence 77776666666666665555555553 33455677888899999999999999988763331
Q ss_pred ------------------------------------------hHHHHHHH-----------------HHHHHHHHhhccc
Q psy2640 553 ------------------------------------------QGFLLKKG-----------------KQLYQLMSARAKC 573 (613)
Q Consensus 553 ------------------------------------------~~~y~~l~-----------------esLiRLseArAkl 573 (613)
..||+.+| |||||||||||||
T Consensus 229 ~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl 308 (331)
T PF00493_consen 229 KSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKL 308 (331)
T ss_dssp --------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHC
T ss_pred ccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHH
Confidence 55776664 6699999999999
Q ss_pred ccccccChhHHHHHHHHhhhcc
Q psy2640 574 ELREEASKQDAQDVIDIMKWSL 595 (613)
Q Consensus 574 ~lre~vt~~Da~~vv~im~~s~ 595 (613)
+||++||.+||++||+||+.||
T Consensus 309 ~lr~~V~~~Dv~~Ai~L~~~Sl 330 (331)
T PF00493_consen 309 RLRDEVTEEDVEEAIRLFEESL 330 (331)
T ss_dssp TTSSECSHHHHHHHHHHHHHHH
T ss_pred hccCceeHHHHHHHHHHHHhhc
Confidence 9999999999999999999987
No 18
>KOG0481|consensus
Probab=99.90 E-value=1e-24 Score=232.52 Aligned_cols=227 Identities=23% Similarity=0.335 Sum_probs=180.8
Q ss_pred CcccchHHHHHHHHHHHhhhhcchhhhhhccccCCccchhhHHHHHHHHhhhCCccc--CCC--CCCCcceeecCCCCCC
Q psy2640 355 ATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHS--TNG--SRGDAHVLIVGDPGLG 430 (613)
Q Consensus 355 ~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~~~~k~gl~l~l~GG~~~--~~~--~rg~idil~vgdpGtg 430 (613)
...+|+.+.|.+.+|| +..++++.+..+.+|.|||++.+|.++++.||||..+ +|+ .||+||+|++|||||.
T Consensus 301 ~~~ft~eEEEeFk~la----~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtA 376 (729)
T KOG0481|consen 301 ATMFTPEEEEEFKKLA----ASPDVYERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTA 376 (729)
T ss_pred cccCChhHHHHHHHHh----cCccHHHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchh
Confidence 3468999999999999 7889999999999999999999999999999999976 455 4999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHHHHHHHH--HHHhhCCcEEecCCceEEE------
Q psy2640 431 KSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFL--TSLNDQGFLLKKGKQLYQL------ 502 (613)
Q Consensus 431 KSq~l~~~~~~~~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~~~~~~i--~~L~~~G~i~~~g~~~~~l------ 502 (613)
|||+ .+|++.+.+.+.++++++-+ .+|++..-..+-. +-.-++|..+...+|+.|+
T Consensus 377 KSQl-------LKFvEkvsPIaVYTSGKGSS---------AAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKM 440 (729)
T KOG0481|consen 377 KSQL-------LKFVEKVSPIAVYTSGKGSS---------AAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKM 440 (729)
T ss_pred HHHH-------HHHHHhcCceEEEecCCCcc---------cccceeeEEecCCcceEEEecceEEEecCCEEEeehhhcc
Confidence 9999 67888888888887766432 3454432211000 0133566666667777774
Q ss_pred --------echhhHHHHHhhhhhhcc------------cc-------ccchhhhcccchhhhccccccccccccCch---
Q psy2640 503 --------MSAKKFISVLQKKAEVQS------------RS-------VFTVTELKQLATSANISVDNFFTFLTSLND--- 552 (613)
Q Consensus 503 --------~~~~~~~~i~~~k~~~~~------------~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--- 552 (613)
+++|+||+|+.+|||+.. |+ -.+..+|+-+-+-.+||||..|..-|..++
T Consensus 441 re~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D 520 (729)
T KOG0481|consen 441 REDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERD 520 (729)
T ss_pred CchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhh
Confidence 499999999999999554 33 234577777888888999988877663222
Q ss_pred --------------------------------------------------------------------------------
Q psy2640 553 -------------------------------------------------------------------------------- 552 (613)
Q Consensus 553 -------------------------------------------------------------------------------- 552 (613)
T Consensus 521 ~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rss 600 (729)
T KOG0481|consen 521 ITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSS 600 (729)
T ss_pred hHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCC
Confidence
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccccChhHHHHHHHHhhhcchhhhcC
Q psy2640 553 QGFLLKKGKQLYQLMSARAKCELREEASKQDAQDVIDIMKWSLIDTSLN 601 (613)
Q Consensus 553 ~~~y~~l~esLiRLseArAkl~lre~vt~~Da~~vv~im~~s~~~~~~d 601 (613)
-+++++|+|.+||++|+.|||+|.-.||..|+.+|+.+|+-|-.|.-+-
T Consensus 601 IPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~vSTmdAa~~ 649 (729)
T KOG0481|consen 601 IPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQVSTMDAASQ 649 (729)
T ss_pred CceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhHhhHHHHhc
Confidence 4577777788999999999999999999999999999999998876544
No 19
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.89 E-value=7.4e-25 Score=244.99 Aligned_cols=228 Identities=25% Similarity=0.398 Sum_probs=166.3
Q ss_pred ccchHHHHHHHHHHHhhhhcchhhhhhccccCCccchhhHHHHHHHHhhhCCcccC--C--CCCCCcceeecCCCCCCcc
Q psy2640 357 PVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHST--N--GSRGDAHVLIVGDPGLGKS 432 (613)
Q Consensus 357 ~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~~~~k~gl~l~l~GG~~~~--~--~~rg~idil~vgdpGtgKS 432 (613)
.+|..+++.+.+++ .+.++++.+..+.+|.|+|++.+|.|+++.++||+++. + ..||++|+|++|+||+|||
T Consensus 175 ~~~~~~~~~i~~~~----~~~~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs 250 (509)
T smart00350 175 SLSDEEEEEIRKLS----KDPDIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKS 250 (509)
T ss_pred cCCHHHHHHHHHHh----cCHHHHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHH
Confidence 47888999998887 46789999999999999999999999999999998653 2 3589999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcCC-----ccccHHHHH--------------HHHHhCCCCHHHH--------HHHHHH
Q psy2640 433 QMLHACCAAKKFISVLQKKAEVQSR-----SVFTVTELK--------------QLATSANISVDNF--------FTFLTS 485 (613)
Q Consensus 433 q~l~~~~~~~~~~~~l~~~~~~~~~-----~~~t~~el~--------------~~a~~~gi~~~~~--------~~~i~~ 485 (613)
+++++..++. +......+ .+++...++ .+|...-+..+++ ..+++.
T Consensus 251 ~lar~l~~~~-------~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~ 323 (509)
T smart00350 251 QLLKYVEKTA-------PRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEA 323 (509)
T ss_pred HHHHHHHHHc-------CcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHH
Confidence 9965544321 11111110 011111000 1122211233333 356666
Q ss_pred HhhCCcEEecCCceEEEechhhHHHHHhhhhhhccccccchhhhcccchhhhccccccccccccCch-------------
Q psy2640 486 LNDQGFLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLND------------- 552 (613)
Q Consensus 486 L~~~G~i~~~g~~~~~l~~~~~~~~i~~~k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------- 552 (613)
|+++.+.+.+++..+.+..++.++...+++. ..+++..++.+|.+|++++++|||+++.+++..+.
T Consensus 324 me~~~i~i~k~G~~~~l~~~~~viAa~NP~~-g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 324 MEQQTISIAKAGITTTLNARCSVLAAANPIG-GRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred HhcCEEEEEeCCEEEEecCCcEEEEEeCCCC-cccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 7666666666677777777766666666653 44577788899999999999999998887751111
Q ss_pred --------------------------------------------hHHHHHHH-------------------HHHHHHHHh
Q psy2640 553 --------------------------------------------QGFLLKKG-------------------KQLYQLMSA 569 (613)
Q Consensus 553 --------------------------------------------~~~y~~l~-------------------esLiRLseA 569 (613)
.+||+++| ++|||||||
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A 482 (509)
T smart00350 403 HRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEA 482 (509)
T ss_pred hcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHH
Confidence 56777766 679999999
Q ss_pred hcccccccccChhHHHHHHHHhhhcch
Q psy2640 570 RAKCELREEASKQDAQDVIDIMKWSLI 596 (613)
Q Consensus 570 rAkl~lre~vt~~Da~~vv~im~~s~~ 596 (613)
||||++|+.||.+||.+||+||+.|++
T Consensus 483 ~A~l~~r~~V~~~Dv~~ai~l~~~s~~ 509 (509)
T smart00350 483 HAKMRLSDVVEEADVEEAIRLLRESII 509 (509)
T ss_pred HHHHcCCCccCHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999974
No 20
>KOG0479|consensus
Probab=99.82 E-value=6.2e-21 Score=206.19 Aligned_cols=229 Identities=27% Similarity=0.414 Sum_probs=161.3
Q ss_pred ccchHHHHHHHHHHHhhhhcchhhhhhccccCCccchhhHHHHHHHHhhhCCcccC--CC--CCCCcceeecCCCCCCcc
Q psy2640 357 PVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHST--NG--SRGDAHVLIVGDPGLGKS 432 (613)
Q Consensus 357 ~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~~~~k~gl~l~l~GG~~~~--~~--~rg~idil~vgdpGtgKS 432 (613)
.+|..++.-+-+||+ +-+.++.+..|.||.||||..+|.+++|.+.||+.+. +| .||+||||.||||++.||
T Consensus 273 ~~t~~Di~~i~klsk----~kdiFdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKS 348 (818)
T KOG0479|consen 273 DFTDEDIRNIKKLSK----KKDIFDLLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKS 348 (818)
T ss_pred cCChhhHHHHHHHHh----cCCHHHHHhhccCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHH
Confidence 356667777777884 5699999999999999999999999999999999774 44 599999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcCCc-----cccH--------HHHHH------HHHhCCCCHHHHH--------HHHHH
Q psy2640 433 QMLHACCAAKKFISVLQKKAEVQSRS-----VFTV--------TELKQ------LATSANISVDNFF--------TFLTS 485 (613)
Q Consensus 433 q~l~~~~~~~~~~~~l~~~~~~~~~~-----~~t~--------~el~~------~a~~~gi~~~~~~--------~~i~~ 485 (613)
|+| +|+=-..++++.+.+. ++|. +|-+- +|+..-+|+++|+ ++.+.
T Consensus 349 QLL-------RyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEV 421 (818)
T KOG0479|consen 349 QLL-------RYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEV 421 (818)
T ss_pred HHH-------HHHHhcccccccccCCCCCCccceeEEeeccccchhhhhcCceEEccCceEEehhcccccchhHHHHHHH
Confidence 994 4544445555543222 1111 11100 1222223666664 45555
Q ss_pred HhhCCcEEecCCceEEEechhhHHHHHhhhhhhccccccchhhhcccchhhhccccccccccccCch-------------
Q psy2640 486 LNDQGFLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLND------------- 552 (613)
Q Consensus 486 L~~~G~i~~~g~~~~~l~~~~~~~~i~~~k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------- 552 (613)
|+++.+.+.|.+-+-.|..++.....-++-- .+++...+..+|+-|...|++|||+.|..+|..+.
T Consensus 422 MEQqtVTIaKAGIHasLNARCSVlAAANPvy-G~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLRm 500 (818)
T KOG0479|consen 422 MEQQTVTIAKAGIHASLNARCSVLAAANPVY-GQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLRM 500 (818)
T ss_pred HhcceEEeEeccchhhhccceeeeeecCccc-cccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHHH
Confidence 5555555555555555555554332222111 34566778899999999999999999999873222
Q ss_pred --------------------------------------------------------------------------------
Q psy2640 553 -------------------------------------------------------------------------------- 552 (613)
Q Consensus 553 -------------------------------------------------------------------------------- 552 (613)
T Consensus 501 HrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea 580 (818)
T KOG0479|consen 501 HRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRIKPKLTQEA 580 (818)
T ss_pred hhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhcCccccHHH
Confidence
Q ss_pred -----------------------hHHHHHHHHHHHHHHHhhcccccccccChhHHHHHHHHhhhcchh
Q psy2640 553 -----------------------QGFLLKKGKQLYQLMSARAKCELREEASKQDAQDVIDIMKWSLID 597 (613)
Q Consensus 553 -----------------------~~~y~~l~esLiRLseArAkl~lre~vt~~Da~~vv~im~~s~~~ 597 (613)
.+++-+.+|-||||+-||||+.|..+|+++||+.|+++|+++++.
T Consensus 581 ~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll~fA~f~ 648 (818)
T KOG0479|consen 581 AEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLLRFALFK 648 (818)
T ss_pred HHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHHHHHHHh
Confidence 112222235599999999999999999999999999999999887
No 21
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.78 E-value=1.1e-18 Score=193.83 Aligned_cols=261 Identities=20% Similarity=0.188 Sum_probs=186.3
Q ss_pred hhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhhhhh-c----ceEEEecccccccCceE--------------
Q psy2640 40 YLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHY-I----ISVYVCGNTSTTSGLTV-------------- 100 (613)
Q Consensus 40 ~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~~~~-~----r~~~~~g~~~s~~gLta-------------- 100 (613)
+...+++++....-||..- .+.|.|+..+..|.-+++.. | .-.+-.....|.+|+..
T Consensus 196 Gq~~~~~al~~aa~~g~~v----lliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~ 271 (499)
T TIGR00368 196 GQQHAKRALEIAAAGGHNL----LLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPH 271 (499)
T ss_pred CcHHHHhhhhhhccCCCEE----EEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccc
Confidence 3444566666666555321 26788988898887666632 2 11222233334444432
Q ss_pred -EEEeeC--CCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccch
Q psy2640 101 -TLSREG--GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMS 177 (613)
Q Consensus 101 -~~~~~~--~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (613)
+.+.+. +|.+...||++.+|++|+|||||+++++.
T Consensus 272 ~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~------------------------------------------ 309 (499)
T TIGR00368 272 HSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKR------------------------------------------ 309 (499)
T ss_pred cccchhhhhCCccccchhhhhccCCCeEecCChhhCCH------------------------------------------
Confidence 111222 45678999999999999999999999998
Q ss_pred HHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCC-CCCCCCC---ccc------hhhccccccccccccEEEEec
Q psy2640 178 AQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPV-GGHYNRA---KTV------AENLRMGQALLSRFDLVFILL 247 (613)
Q Consensus 178 ~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~-~g~~~~~---~~~------~e~i~l~~~llsRFDLi~~l~ 247 (613)
..+..|+++||++.++|.++|....+|+++.++|++||+ -|+|+.. .++ ..+-+++.+||+||||++.+.
T Consensus 310 ~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~ 389 (499)
T TIGR00368 310 SVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVP 389 (499)
T ss_pred HHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEc
Confidence 488999999999999999999999999999999999998 5677531 222 224579999999999999887
Q ss_pred CCCC--------hhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCC-CCCCCCCHHHHHHH
Q psy2640 248 DNPD--------EHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPG-EELPLIPAPLLHKY 318 (613)
Q Consensus 248 d~~~--------~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g-~~~~~i~~~lLrkY 318 (613)
+... .+....+.++|...+. .+.+|+....+ ..+..++...+++|
T Consensus 390 ~~~~~~l~~~~~~e~s~~ir~rV~~Ar~--------------------------~q~~R~~~~~~~~~N~~l~~~~l~~~ 443 (499)
T TIGR00368 390 LLPPEKLLSTGSGESSAEVKQRVIKARE--------------------------IQNIRYEKFANINKNADLNSDEIEQF 443 (499)
T ss_pred CCCHHHHhccCCCCCHHHHHHHHHHHHH--------------------------HHHHHhcCCCCCcccccCCHHHHHhh
Confidence 5432 2345566777766541 11222221000 12445788999988
Q ss_pred HHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCccch
Q psy2640 319 LAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFG 393 (613)
Q Consensus 319 I~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~ 393 (613)
| .+++++.+.|...|..+. +|.|.+..|+|+|+++ |+++.++.|..+|+-+.+.
T Consensus 444 -------~---~l~~~~~~~l~~a~~~~~----------lS~R~~~rilrvArTi-AdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 444 -------C---KLSAIDANDLEGALNKLG----------LSSRATHRILKVARTI-ADLKEEKNISREHLAEAIE 497 (499)
T ss_pred -------c---CCCHHHHHHHHHHHHhcC----------CCchHHHHHHHHHHHH-HhhcCCCCCCHHHHHHHHh
Confidence 6 689999999999887654 7999999999999999 9999999999998866543
No 22
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.72 E-value=7.8e-18 Score=186.62 Aligned_cols=199 Identities=24% Similarity=0.393 Sum_probs=151.7
Q ss_pred CCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhh
Q psy2640 107 GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEA 186 (613)
Q Consensus 107 ~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ea 186 (613)
+|.+.++||.+.+||+|++|+||++.++. ..+++|+++
T Consensus 280 GGg~~~~pG~l~~A~gGvLfLDEi~e~~~------------------------------------------~~~~~L~~~ 317 (506)
T PRK09862 280 GGGAIPGPGEISLAHNGVLFLDELPEFER------------------------------------------RTLDALREP 317 (506)
T ss_pred CCCceehhhHhhhccCCEEecCCchhCCH------------------------------------------HHHHHHHHH
Confidence 56889999999999999999999999988 488999999
Q ss_pred hcCCeEEEecccceeecCCcceeecccCCC-CCCCCCC-ccc-hhh-----ccccccccccccEEEEecCCCC-------
Q psy2640 187 MEQQSISIAKASVVCSLPARTSVIAAANPV-GGHYNRA-KTV-AEN-----LRMGQALLSRFDLVFILLDNPD------- 251 (613)
Q Consensus 187 meqq~isi~kagi~~~l~ar~svlAaaNP~-~g~~~~~-~~~-~e~-----i~l~~~llsRFDLi~~l~d~~~------- 251 (613)
||++.++|.+.|...++|++|.++||+||+ .|+|... +.+ .++ -+++.++|+||||.+.+-..+.
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~ 397 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTV 397 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhccc
Confidence 999999999999999999999999999998 6777542 221 222 4799999999999887764321
Q ss_pred --hhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCC
Q psy2640 252 --EHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKP 329 (613)
Q Consensus 252 --~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P 329 (613)
.+....+.+.|+.... .+.++ + +..+..++...+++| |
T Consensus 398 ~~~ess~~i~~rV~~ar~--------------------------~q~~r-~---~~~n~~l~~~~l~~~-------~--- 437 (506)
T PRK09862 398 VPGESSATVKQRVMAARE--------------------------RQFKR-Q---NKLNAWLDSPEIRQF-------C--- 437 (506)
T ss_pred CCCCChHHHHHHHhhHHH--------------------------HHHHH-H---HHHhcccCHHHHHHH-------h---
Confidence 1122223333332220 00111 0 011233566777777 5
Q ss_pred cCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCccchhhHHH
Q psy2640 330 ELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVK 398 (613)
Q Consensus 330 ~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~~~~k 398 (613)
.+++++.+.+..+|.++. +|+|....++|+|+++ |.++.++.|+.+|+-+.+.+..++
T Consensus 438 ~l~~~~~~~l~~~~~~~~----------lS~Ra~~rlLrvARTi-ADL~g~~~V~~~hv~eAl~yR~~~ 495 (506)
T PRK09862 438 KLESEDARWLEETLIHLG----------LSIRAWQRLLKVARTI-ADIDQSDIITRQHLQEAVSYRAID 495 (506)
T ss_pred CCCHHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHH-HHHcCCCCCCHHHHHHHHHhhccc
Confidence 588999999999887664 7999999999999999 999999999999998877776544
No 23
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.68 E-value=3.4e-16 Score=177.95 Aligned_cols=252 Identities=17% Similarity=0.090 Sum_probs=193.5
Q ss_pred hHHHHhhhhhcccchhhhhhh-ccCCchhhhhHHHHhhhhh-cce-EEEecc-cccccCceEEEEee--C-CCCeeecCc
Q psy2640 43 DIKVLMNDQIFNDQWKTFLQN-LSNEPQHTINCLGLAMHHY-IIS-VYVCGN-TSTTSGLTVTLSRE--G-GGDFALEAG 115 (613)
Q Consensus 43 dvK~~i~~qlfgg~~k~~~~~-l~~~p~~~~~~l~la~~~~-~r~-~~~~g~-~~s~~gLta~~~~~--~-~g~~~le~G 115 (613)
++|.|+++-.+ .|.+.-- +.|.|+..+..|.-++|.. |+. -|+.-. +.|...|.+.+--. - +|.|++++|
T Consensus 2 ~~~~Al~l~av---~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G 78 (589)
T TIGR02031 2 RAKLALTLLAV---DPSLGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPG 78 (589)
T ss_pred hHHHHHHHhcc---CCCcceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCC
Confidence 56777776655 3333221 5799999999999888864 543 143322 34555566654211 1 678999999
Q ss_pred eeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEe
Q psy2640 116 ALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIA 195 (613)
Q Consensus 116 alvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~ 195 (613)
.+..||+|++++||++.++. ..+..|+++|+++.+++.
T Consensus 79 ~L~~A~~GvL~lDEi~rl~~------------------------------------------~~q~~Ll~al~~g~v~i~ 116 (589)
T TIGR02031 79 LLDEAPRGVLYVDMANLLDD------------------------------------------GLSNRLLQALDEGVVIVE 116 (589)
T ss_pred CeeeCCCCcEeccchhhCCH------------------------------------------HHHHHHHHHHHcCCeEEE
Confidence 99999999999999999998 588999999999999999
Q ss_pred cccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCC
Q psy2640 196 KASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNP 275 (613)
Q Consensus 196 kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~ 275 (613)
+.|...++|++|.+||+.||.. +.-.+++.|++||++.+.+.+.++......+.++......
T Consensus 117 r~G~~~~~p~~f~lIAt~np~e----------~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~-------- 178 (589)
T TIGR02031 117 REGISVVHPAKFALIATYDPAE----------GGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEV-------- 178 (589)
T ss_pred ECCCceeecCceEEEEecCCcc----------ccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhh--------
Confidence 9999999999999999999973 1126999999999998888877766555666665442110
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCC
Q psy2640 276 SHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDA 355 (613)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~ 355 (613)
.....+..+++++|.+||+.+++..++++..++|.+.++.++-
T Consensus 179 ------------------------------~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv------- 221 (589)
T TIGR02031 179 ------------------------------FRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGI------- 221 (589)
T ss_pred ------------------------------hhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCC-------
Confidence 0001245789999999999875558999999999999987652
Q ss_pred cccchHHHHHHHHHHHhhhhcchhhhhhccccC----CccchhhHH
Q psy2640 356 TPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC----PSIFGHEMV 397 (613)
Q Consensus 356 ~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~----~~I~~~~~~ 397 (613)
-++|....++|+|+|+ |.++.+++|+.+|+ +-++.|.+.
T Consensus 222 --~s~Ra~i~~~r~ArA~-Aal~gr~~V~~~Dv~~a~~lvl~hR~~ 264 (589)
T TIGR02031 222 --SGHRADLFAVRAAKAH-AALHGRTEVTEEDLKLAVELVLLPRAT 264 (589)
T ss_pred --CCccHHHHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHhhhhcc
Confidence 2589999999999999 99999999999999 445566653
No 24
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.67 E-value=5.8e-16 Score=177.65 Aligned_cols=261 Identities=17% Similarity=0.178 Sum_probs=189.8
Q ss_pred cchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhhhhhcc---------------------------------
Q psy2640 38 RCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHYII--------------------------------- 84 (613)
Q Consensus 38 ~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~~~~~r--------------------------------- 84 (613)
+.|..++|+++....+....-. =-+.|.|+..+..+.-++|...-
T Consensus 6 ivGq~~~~~al~~~av~~~~g~--vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~ 83 (633)
T TIGR02442 6 IVGQEDLKLALLLNAVDPRIGG--VLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQ 83 (633)
T ss_pred hcChHHHHHHHHHHhhCCCCCe--EEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccccc
Confidence 4678889999888877321100 11568888889888877775421
Q ss_pred --eEEEe-cccccccCceEEEEeeC---CCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccc
Q psy2640 85 --SVYVC-GNTSTTSGLTVTLSREG---GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTP 158 (613)
Q Consensus 85 --~~~~~-g~~~s~~gLta~~~~~~---~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~ 158 (613)
.-|+. --+.|...|.+++.-.. +|.+.+++|.+..|++|++||||+++++.
T Consensus 84 ~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~----------------------- 140 (633)
T TIGR02442 84 RPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD----------------------- 140 (633)
T ss_pred CCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH-----------------------
Confidence 01111 11223333444432221 57899999999999999999999999998
Q ss_pred cccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccc
Q psy2640 159 AFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLS 238 (613)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~lls 238 (613)
..+.+|+++|+++.+.+.+.|...++|+++.++|++||..| .++++|++
T Consensus 141 -------------------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg------------~l~~~L~d 189 (633)
T TIGR02442 141 -------------------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEG------------DLRPQLLD 189 (633)
T ss_pred -------------------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCC------------CCCHHHHh
Confidence 58899999999999999999999999999999999999643 38889999
Q ss_pred cccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHH
Q psy2640 239 RFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKY 318 (613)
Q Consensus 239 RFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkY 318 (613)
||+|.+.+.+..+.+.+..+..+.+..... ...+..++. .....+.++
T Consensus 190 R~~l~i~v~~~~~~~~~~~il~~~~~~~~~-----------------------~~~~~~~~~---------~~~~~l~~~ 237 (633)
T TIGR02442 190 RFGLCVDVAAPRDPEERVEIIRRRLAFDAD-----------------------PEAFAARWA---------AEQEELRNR 237 (633)
T ss_pred hcceEEEccCCCchHHHHHHHHHHHhhccC-----------------------cHHHHHHhh---------hhHHHHHHH
Confidence 999888877766665556666554432210 000011110 123578899
Q ss_pred HHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC----Cccchh
Q psy2640 319 LAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC----PSIFGH 394 (613)
Q Consensus 319 I~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~----~~I~~~ 394 (613)
|..||.......+++++.++|.+++..++- -+.|....++|+|+|+ |.++.++.|+.+|+ .-++.|
T Consensus 238 i~~ar~~~~~V~is~~~~~~l~~~~~~~~i---------~s~Ra~i~~~r~Ara~-AaL~gr~~V~~~Dv~~A~~lvL~h 307 (633)
T TIGR02442 238 IARARSLLPSVRISDSLIRFISELCIEFGV---------DGHRADIVMARAARAL-AALDGRRRVTAEDVREAAELVLPH 307 (633)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhCC---------CCccHHHHHHHHHHHH-HHHcCCCcCCHHHHHHHHHHHhhh
Confidence 999999764558999999999999998862 1589999999999999 99999999999999 334455
Q ss_pred hH
Q psy2640 395 EM 396 (613)
Q Consensus 395 ~~ 396 (613)
..
T Consensus 308 R~ 309 (633)
T TIGR02442 308 RR 309 (633)
T ss_pred hc
Confidence 44
No 25
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.54 E-value=5.2e-14 Score=149.66 Aligned_cols=261 Identities=17% Similarity=0.166 Sum_probs=181.2
Q ss_pred cchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhhhhhc---ceEEEe--------------------c----
Q psy2640 38 RCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHYI---ISVYVC--------------------G---- 90 (613)
Q Consensus 38 ~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~~~~~---r~~~~~--------------------g---- 90 (613)
+-|.+++|.++++-++....-.+ -+.|.|+..+..|.-+++... +++.-+ .
T Consensus 6 ivgq~~~~~al~~~~~~~~~g~v--li~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 83 (337)
T TIGR02030 6 IVGQDEMKLALLLNVIDPKIGGV--MVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEP 83 (337)
T ss_pred cccHHHHHHHHHHHhcCCCCCeE--EEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcccc
Confidence 45788899998888764111111 156778877777665554321 000000 0
Q ss_pred --------------ccccccCceEEEEeeC---CCCeeecCceeecccCceeccccccCCCcccccccchhccccccccc
Q psy2640 91 --------------NTSTTSGLTVTLSREG---GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITS 153 (613)
Q Consensus 91 --------------~~~s~~gLta~~~~~~---~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~ 153 (613)
-++|.--|++++.-+. +|+|++++|.+..|++|++++||++.++.
T Consensus 84 ~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~------------------ 145 (337)
T TIGR02030 84 LSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED------------------ 145 (337)
T ss_pred cccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH------------------
Confidence 0223334666665544 68999999999999999999999999988
Q ss_pred ccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhcccc
Q psy2640 154 RQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMG 233 (613)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~ 233 (613)
..++.|+++|+++.+++.+.|...++|+|+.++|+.||..| .++
T Consensus 146 ------------------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg------------~l~ 189 (337)
T TIGR02030 146 ------------------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEG------------ELR 189 (337)
T ss_pred ------------------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccC------------CCC
Confidence 47899999999999999999999999999999999999733 289
Q ss_pred ccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHH
Q psy2640 234 QALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAP 313 (613)
Q Consensus 234 ~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~ 313 (613)
+.|++||.+.+.+-...+.+....+-++...... . . ....+.+ .....
T Consensus 190 ~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~--~-------------~--------~~~~~~~---------~~e~~ 237 (337)
T TIGR02030 190 PQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDA--D-------------P--------HAFCEKW---------QTEQE 237 (337)
T ss_pred HHHHhhcceEEECCCCCCHHHHHHHHHhhhhccc--C-------------c--------hhhhhhh---------hhhhh
Confidence 9999999875555444331222232222111000 0 0 0000000 01224
Q ss_pred HHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC----C
Q psy2640 314 LLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC----P 389 (613)
Q Consensus 314 lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~----~ 389 (613)
.+.+.|..||+.++...+++++.+++.+.+..+|.. ++|....++|.|+|+ |-++.+++|+.+|+ +
T Consensus 238 ~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~---------s~Ra~i~l~raArA~-Aal~GR~~V~~dDv~~~a~ 307 (337)
T TIGR02030 238 ALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVD---------GLRGELTLNRAAKAL-AAFEGRTEVTVDDIRRVAV 307 (337)
T ss_pred cCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCC---------CCcHHHHHHHHHHHH-HHHcCCCCCCHHHHHHHHH
Confidence 578888899988756689999999999999888721 689999999999999 99999999999999 4
Q ss_pred ccchhhH
Q psy2640 390 SIFGHEM 396 (613)
Q Consensus 390 ~I~~~~~ 396 (613)
-++.|..
T Consensus 308 ~vL~HR~ 314 (337)
T TIGR02030 308 LALRHRL 314 (337)
T ss_pred HHHHHhC
Confidence 4555554
No 26
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.5e-14 Score=156.22 Aligned_cols=283 Identities=19% Similarity=0.187 Sum_probs=192.1
Q ss_pred cchHHHHHHHHHHhhCccccc---hHHhhhc---------cchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHH
Q psy2640 10 PTDTKIKSCLDFIERHNHLYN---VAEIEER---------RCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGL 77 (613)
Q Consensus 10 ~~~~~i~~~e~~~~~~~~lYd---~~~I~~~---------~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~l 77 (613)
..++-+.++-+||... .-+. ..++... .-|..-.|+++.-.--||..-- +.|-|+..+.+|.-
T Consensus 142 ~~~~~l~ev~~~l~g~-~~l~~~~~~~~~~~~~~~~D~~DV~GQ~~AKrAleiAAAGgHnLl----~~GpPGtGKTmla~ 216 (490)
T COG0606 142 YGARYLEEVVNFLEGK-LRLPIPIPSEVIESFSLAPDFKDVKGQEQAKRALEIAAAGGHNLL----LVGPPGTGKTMLAS 216 (490)
T ss_pred cchhhHHHHHHHhcCC-cCCCCCCccccccccccCcchhhhcCcHHHHHHHHHHHhcCCcEE----EecCCCCchHHhhh
Confidence 4667778888878763 1122 1121111 2234445667666666665543 46888888877631
Q ss_pred ------------------hhhhh------------cceEEEecccccccCceEEEEeeCCCCeeecCceeecccCceecc
Q psy2640 78 ------------------AMHHY------------IISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCI 127 (613)
Q Consensus 78 ------------------a~~~~------------~r~~~~~g~~~s~~gLta~~~~~~~g~~~le~GalvLad~gv~ci 127 (613)
++|-+ -|-.-..+.++|.+.|. +|.-..+||++.|||+||+++
T Consensus 217 Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLv-------GGG~~p~PGeIsLAH~GVLFL 289 (490)
T COG0606 217 RLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALV-------GGGGVPRPGEISLAHNGVLFL 289 (490)
T ss_pred hhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHHh-------CCCCCCCCCceeeecCCEEEe
Confidence 11110 01122234455555555 566889999999999999999
Q ss_pred ccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcc
Q psy2640 128 DEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPART 207 (613)
Q Consensus 128 DEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~ 207 (613)
||+...+. +..++|+|+||.+++.|+.++-..++||++
T Consensus 290 DElpef~~------------------------------------------~iLe~LR~PLE~g~i~IsRa~~~v~ypa~F 327 (490)
T COG0606 290 DELPEFKR------------------------------------------SILEALREPLENGKIIISRAGSKVTYPARF 327 (490)
T ss_pred eccchhhH------------------------------------------HHHHHHhCccccCcEEEEEcCCeeEEeeee
Confidence 99999988 478999999999999999999999999999
Q ss_pred eeecccCCCCCCCCC----Cccch------hhccccccccccccEEEEecCCC---------ChhhhHHHHHHHHHhhcC
Q psy2640 208 SVIAAANPVGGHYNR----AKTVA------ENLRMGQALLSRFDLVFILLDNP---------DEHLDTLLSEHVMASLSG 268 (613)
Q Consensus 208 svlAaaNP~~g~~~~----~~~~~------e~i~l~~~llsRFDLi~~l~d~~---------~~~~d~~la~~Il~~~~~ 268 (613)
..+||+||+..-+.. .+.+. ..-+++.++++||||...+-+-. .++....+.+.|...+.-
T Consensus 328 qlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~ 407 (490)
T COG0606 328 QLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREA 407 (490)
T ss_pred EEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHH
Confidence 999999999443321 11121 23579999999999988775433 122355566666655420
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHh
Q psy2640 269 FQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRK 348 (613)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~ 348 (613)
+..|.... + .+..+....|++| | .|+.++.+.|..+-.++
T Consensus 408 --------------------------Q~~R~~~~-~-~Na~l~~~~l~k~-------~---~L~~~~~~~L~~al~~~-- 447 (490)
T COG0606 408 --------------------------QIARAGRI-G-INAELSEEALRKF-------C---ALQREDADLLKAALERL-- 447 (490)
T ss_pred --------------------------HHHHhhcc-C-cchhcCHHHHHHh-------c---ccCHhHHHHHHHHHHhc--
Confidence 01111111 1 2334677888887 5 68888888888754444
Q ss_pred ccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCccchhh
Q psy2640 349 HHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHE 395 (613)
Q Consensus 349 ~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~~ 395 (613)
.++.|.++.|+|++..+ |+++..+.+...+.-+.+++.
T Consensus 448 --------~lS~R~~~rILKvarTi-ADL~g~~~i~~~hl~eAi~yR 485 (490)
T COG0606 448 --------GLSARAYHRILKVARTI-ADLEGSEQIERSHLAEAISYR 485 (490)
T ss_pred --------chhHHHHHHHHHHHhhh-hcccCcchhhHHHHHHHHhhh
Confidence 48999999999999999 999999998888876666654
No 27
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.51 E-value=2.1e-13 Score=144.86 Aligned_cols=252 Identities=16% Similarity=0.112 Sum_probs=173.8
Q ss_pred chhhhHHHHhhhhhc-ccchhhhhhhccCCchhhhhHHHHhhhhh-cc-----eE-EEe-------------c-------
Q psy2640 39 CYLVDIKVLMNDQIF-NDQWKTFLQNLSNEPQHTINCLGLAMHHY-II-----SV-YVC-------------G------- 90 (613)
Q Consensus 39 ~~~~dvK~~i~~qlf-gg~~k~~~~~l~~~p~~~~~~l~la~~~~-~r-----~~-~~~-------------g------- 90 (613)
-|..++|+++...++ .|..- =-+.|.|+..+..|.-++... |. +. +.+ +
T Consensus 11 ~Gq~~~~~~l~~~~~~~~~~~---vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (334)
T PRK13407 11 VGQEEMKQAMVLTAIDPGIGG---VLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERP 87 (334)
T ss_pred CCHHHHHHHHHHHHhccCCCc---EEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccC
Confidence 477888888876655 22111 125688888887776554332 11 00 000 0
Q ss_pred -------ccccccCceEEEEeeC---CCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccc
Q psy2640 91 -------NTSTTSGLTVTLSREG---GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAF 160 (613)
Q Consensus 91 -------~~~s~~gLta~~~~~~---~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~ 160 (613)
-++|...|++++..+. +|++++++|.+..|++|++++||++.++.
T Consensus 88 ~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~------------------------- 142 (334)
T PRK13407 88 TPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED------------------------- 142 (334)
T ss_pred CccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH-------------------------
Confidence 1234444666655554 58999999999999999999999999998
Q ss_pred cccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccc
Q psy2640 161 ITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRF 240 (613)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRF 240 (613)
..+++|+++|+++.+++...|....+|+++.++|+.||..+ .+++.|++||
T Consensus 143 -----------------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~------------~l~~aLldRF 193 (334)
T PRK13407 143 -----------------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEG------------ELRPQLLDRF 193 (334)
T ss_pred -----------------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccC------------CCCHHHHhhc
Confidence 58899999999999999999999999999999999999632 2899999999
Q ss_pred cEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHH
Q psy2640 241 DLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLA 320 (613)
Q Consensus 241 DLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~ 320 (613)
.+.+.+....+.+.-..+-.+..... . .+ . .....+ .. .......-|.
T Consensus 194 ~~~v~v~~~~~~~e~~~il~~~~~~~---~---~~----------------~-~~~~~~-----~~----~~~~~~~~i~ 241 (334)
T PRK13407 194 GLSVEVRSPRDVETRVEVIRRRDAYD---A---DH----------------D-AFMAKW-----GA----EDMQLRGRIL 241 (334)
T ss_pred ceEEEcCCCCcHHHHHHHHHHhhccc---c---cc----------------h-hhhccc-----cc----cccCCHHHHH
Confidence 87776643333222222222211100 0 00 0 000000 00 1123455566
Q ss_pred HHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCC
Q psy2640 321 YARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCP 389 (613)
Q Consensus 321 ~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~ 389 (613)
-||+.+....++++..+++.+....+|.. ++|..-.++|.|+|+ |-++.+++|+.+|+.
T Consensus 242 ~a~~~~~~V~v~~~~~~yi~~l~~~~~~~---------s~Ra~i~l~~aA~a~-A~l~Gr~~V~~~Di~ 300 (334)
T PRK13407 242 GARARLPQLKTPNTVLHDCAALCIALGSD---------GLRGELTLLRAARAL-AAFEGAEAVGRSHLR 300 (334)
T ss_pred HHHHhcCCcccCHHHHHHHHHHHHHHCCC---------CchHHHHHHHHHHHH-HHHcCCCeeCHHHHH
Confidence 67777766789999999999999988853 688888899999999 999999999999983
No 28
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.50 E-value=1.6e-13 Score=146.14 Aligned_cols=266 Identities=17% Similarity=0.166 Sum_probs=183.1
Q ss_pred ccchHHhhhccchhhhHHHHhhhhhcccchhhhhhh-ccCCchhhhhHHHHhhhhh-cceEEEec---------------
Q psy2640 28 LYNVAEIEERRCYLVDIKVLMNDQIFNDQWKTFLQN-LSNEPQHTINCLGLAMHHY-IISVYVCG--------------- 90 (613)
Q Consensus 28 lYd~~~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~-l~~~p~~~~~~l~la~~~~-~r~~~~~g--------------- 90 (613)
+|....| -|.+++|+++.+.... |.+..- +.|.++.++..+.-+++.. |..-.+.+
T Consensus 13 ~~pf~~i----vGq~~~k~al~~~~~~---p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~ 85 (350)
T CHL00081 13 VFPFTAI----VGQEEMKLALILNVID---PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSD 85 (350)
T ss_pred CCCHHHH----hChHHHHHHHHHhccC---CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhch
Confidence 5666655 5777899999988763 333211 5677888887766544332 22111111
Q ss_pred ---------c----------------cccccCceEEEEeeC---CCCeeecCceeecccCceeccccccCCCcccccccc
Q psy2640 91 ---------N----------------TSTTSGLTVTLSREG---GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGML 142 (613)
Q Consensus 91 ---------~----------------~~s~~gLta~~~~~~---~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~ 142 (613)
. +.|..-|.+++--+. +|.+++++|.+.-||+|++++||++.++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~------- 158 (350)
T CHL00081 86 EVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD------- 158 (350)
T ss_pred hhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH-------
Confidence 0 111111222211111 46788899999999999999999999998
Q ss_pred hhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCC
Q psy2640 143 YTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNR 222 (613)
Q Consensus 143 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~ 222 (613)
..++.|.++|+++.+++.+.|....+|+|+.++|+.||..|
T Consensus 159 -----------------------------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg---- 199 (350)
T CHL00081 159 -----------------------------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEG---- 199 (350)
T ss_pred -----------------------------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccC----
Confidence 58899999999999999999999999999999999999733
Q ss_pred CccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCC
Q psy2640 223 AKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPG 302 (613)
Q Consensus 223 ~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 302 (613)
.+++.|++||.+.+.+-...+++....+.++....... + ....+.+
T Consensus 200 --------~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~------~-----------------~~~~~~~--- 245 (350)
T CHL00081 200 --------ELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKN------P-----------------QEFREKY--- 245 (350)
T ss_pred --------CCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccC------h-----------------hhhhhhh---
Confidence 28899999998887777655555555555443210000 0 0000000
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhh
Q psy2640 303 PGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKL 382 (613)
Q Consensus 303 ~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~ 382 (613)
.. .+ .....-|.-||+.+++..++++..++|.+....+|. -++|....++|.|+|+ |-++.+++
T Consensus 246 --~~---~~-~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~---------~s~Ra~i~l~raArA~-Aal~GR~~ 309 (350)
T CHL00081 246 --EE---SQ-EELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDV---------DGLRGDIVTNRAAKAL-AAFEGRTE 309 (350)
T ss_pred --cc---cc-ccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCC---------CCChHHHHHHHHHHHH-HHHcCCCC
Confidence 00 01 123455566787776678999999999999999884 2799999999999999 99999999
Q ss_pred hccccC----CccchhhH
Q psy2640 383 LVNSLC----PSIFGHEM 396 (613)
Q Consensus 383 v~~sd~----~~I~~~~~ 396 (613)
|+.+|+ +-++.|.+
T Consensus 310 V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 310 VTPKDIFKVITLCLRHRL 327 (350)
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 999998 44555554
No 29
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.36 E-value=2.3e-12 Score=146.00 Aligned_cols=234 Identities=15% Similarity=0.062 Sum_probs=162.3
Q ss_pred hhhhHHHHhhhh-----hcccchhhhhhhccCCchhhhhHHHHhhhhh-cc--eEEEecccccccCceEEEEeeC---CC
Q psy2640 40 YLVDIKVLMNDQ-----IFNDQWKTFLQNLSNEPQHTINCLGLAMHHY-II--SVYVCGNTSTTSGLTVTLSREG---GG 108 (613)
Q Consensus 40 ~~~dvK~~i~~q-----lfgg~~k~~~~~l~~~p~~~~~~l~la~~~~-~r--~~~~~g~~~s~~gLta~~~~~~---~g 108 (613)
...++|.|+++- -+||++. +|.++..+..+.-+.+.. |- -+-.-=-++|...|.+++--+. .|
T Consensus 7 ~~~~~~~Al~l~av~p~~~gGv~i------~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g 80 (584)
T PRK13406 7 DWADAALAAALLAVDPAGLGGVVL------RARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAG 80 (584)
T ss_pred hHHHHHHHHHHhCcCccccceEEE------EcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcC
Confidence 367888888765 4455553 566677776665444322 21 1111123455555665542222 45
Q ss_pred CeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhc
Q psy2640 109 DFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAME 188 (613)
Q Consensus 109 ~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eame 188 (613)
.-+++||.+-+||+||+++||++.+++ ...++|+++||
T Consensus 81 ~~~~~pGlla~Ah~GvL~lDe~n~~~~------------------------------------------~~~~aLleame 118 (584)
T PRK13406 81 RPVAQRGLLAEADGGVLVLAMAERLEP------------------------------------------GTAARLAAALD 118 (584)
T ss_pred CcCCCCCceeeccCCEEEecCcccCCH------------------------------------------HHHHHHHHHHh
Confidence 667999999999999999999999998 48899999999
Q ss_pred CCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcC
Q psy2640 189 QQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSG 268 (613)
Q Consensus 189 qq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~ 268 (613)
.+.|+|...|...++|++|.++|+.||. .+...+|++||+||||.+.+-.....+. . .
T Consensus 119 ~G~vtIeR~G~s~~~Pa~F~LIat~~~~----------~~~~~L~~~lLDRf~l~v~v~~~~~~~~-~---------~-- 176 (584)
T PRK13406 119 TGEVRLERDGLALRLPARFGLVALDEGA----------EEDERAPAALADRLAFHLDLDGLALRDA-R---------E-- 176 (584)
T ss_pred CCcEEEEECCcEEecCCCcEEEecCCCh----------hcccCCCHHhHhheEEEEEcCCCChHHh-c---------c--
Confidence 9999999999999999999999987775 1225799999999998666644332210 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHh
Q psy2640 269 FQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRK 348 (613)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~ 348 (613)
...+ ..-|.-||+.+.+..++++..+++++.+..+
T Consensus 177 ---------------------------------------~~~~----~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~-- 211 (584)
T PRK13406 177 ---------------------------------------IPID----ADDIAAARARLPAVGPPPEAIAALCAAAAAL-- 211 (584)
T ss_pred ---------------------------------------cCCC----HHHHHHHHHHHccCCCCHHHHHHHHHHHHHh--
Confidence 0011 1123334444434577777777777666543
Q ss_pred ccCCCCCccc-chHHHHHHHHHHHhhhhcchhhhhhccccCCc----cchhhHH
Q psy2640 349 HHHSVDATPV-TTRQLESLVRLTQDIQAEPNLFKLLVNSLCPS----IFGHEMV 397 (613)
Q Consensus 349 ~~~~~~~~~i-T~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~----I~~~~~~ 397 (613)
.+ |.|....++|+|+|+ |.++.++.|+.+|+.+ ++.|...
T Consensus 212 --------gv~S~Ra~i~llraARa~-AaL~Gr~~V~~~dv~~Aa~lvL~hR~~ 256 (584)
T PRK13406 212 --------GIASLRAPLLALRAARAA-AALAGRTAVEEEDLALAARLVLAPRAT 256 (584)
T ss_pred --------CCCCcCHHHHHHHHHHHH-HHHcCCCCCCHHHHHHHHHHHHHhhcc
Confidence 34 899999999999999 9999999999999943 4455543
No 30
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.31 E-value=8.5e-13 Score=130.34 Aligned_cols=162 Identities=23% Similarity=0.294 Sum_probs=87.7
Q ss_pred cchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhhhhh-c----------ceEE-EecccccccCceEE----
Q psy2640 38 RCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHY-I----------ISVY-VCGNTSTTSGLTVT---- 101 (613)
Q Consensus 38 ~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~~~~-~----------r~~~-~~g~~~s~~gLta~---- 101 (613)
+-|.+..|+|+.....|+..- -+.|-|+..+..|..+++-. | ..+| ++| .....++...
T Consensus 5 I~GQe~aKrAL~iAAaG~h~l----Ll~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~-~~~~~~~~~~~Pfr 79 (206)
T PF01078_consen 5 IVGQEEAKRALEIAAAGGHHL----LLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG-LGPDEGLIRQRPFR 79 (206)
T ss_dssp SSSTHHHHHHHHHHHHCC--E----EEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT----S---EEEE---EE
T ss_pred hcCcHHHHHHHHHHHcCCCCe----EEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc-CCCCCceecCCCcc
Confidence 457888999999999887432 25789999998887554321 1 1111 112 0111111111
Q ss_pred -----EEeeC--CCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccc
Q psy2640 102 -----LSREG--GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRH 174 (613)
Q Consensus 102 -----~~~~~--~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 174 (613)
++... +|...++||++-|||+||+++||+..+++
T Consensus 80 ~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~--------------------------------------- 120 (206)
T PF01078_consen 80 APHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDR--------------------------------------- 120 (206)
T ss_dssp EE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-H---------------------------------------
T ss_pred cCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCH---------------------------------------
Confidence 11111 24558999999999999999999999998
Q ss_pred cchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCC----CCcc------chhhccccccccccccEEE
Q psy2640 175 TMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYN----RAKT------VAENLRMGQALLSRFDLVF 244 (613)
Q Consensus 175 ~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~----~~~~------~~e~i~l~~~llsRFDLi~ 244 (613)
...++|+++||++.++|.++|...++||++.++||+||+.+-|- .... -..+-+++.|+++|||+..
T Consensus 121 ---~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v 197 (206)
T PF01078_consen 121 ---SVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHV 197 (206)
T ss_dssp ---HHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S---------------------------------------
T ss_pred ---HHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccc
Confidence 47899999999999999999999999999999999999955431 1222 2233579999999999866
Q ss_pred Ee
Q psy2640 245 IL 246 (613)
Q Consensus 245 ~l 246 (613)
.+
T Consensus 198 ~~ 199 (206)
T PF01078_consen 198 EV 199 (206)
T ss_dssp --
T ss_pred cc
Confidence 55
No 31
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.11 E-value=1.3e-09 Score=120.12 Aligned_cols=266 Identities=18% Similarity=0.130 Sum_probs=179.1
Q ss_pred HhhhccchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhhhhhc-ce---EEEecccccccCceEEE-EeeC-
Q psy2640 33 EIEERRCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHYI-IS---VYVCGNTSTTSGLTVTL-SREG- 106 (613)
Q Consensus 33 ~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~~~~~-r~---~~~~g~~~s~~gLta~~-~~~~- 106 (613)
++.....+-.++-+.+..-++.|..-= +.|-|+.++..|.-++|... +. .+.....+|...|++.. .+..
T Consensus 17 ~l~~~i~gre~vI~lll~aalag~hVL----L~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~ 92 (498)
T PRK13531 17 ALEKGLYERSHAIRLCLLAALSGESVF----LLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALK 92 (498)
T ss_pred HHhhhccCcHHHHHHHHHHHccCCCEE----EECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhh
Confidence 344455666666666665555444332 46889999999988887643 21 33333433555677654 3332
Q ss_pred -CCCee-ecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHH
Q psy2640 107 -GGDFA-LEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALL 184 (613)
Q Consensus 107 -~g~~~-le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 184 (613)
+|.|. ..+|.+.-|+ ++++||+.++++ ..+.+|+
T Consensus 93 ~~g~f~r~~~G~L~~A~--lLfLDEI~rasp------------------------------------------~~QsaLL 128 (498)
T PRK13531 93 DEGRYQRLTSGYLPEAE--IVFLDEIWKAGP------------------------------------------AILNTLL 128 (498)
T ss_pred hcCchhhhcCCcccccc--EEeecccccCCH------------------------------------------HHHHHHH
Confidence 67774 7888887787 999999999998 5899999
Q ss_pred hhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhh-HHHHHHHH
Q psy2640 185 EAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLD-TLLSEHVM 263 (613)
Q Consensus 185 eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d-~~la~~Il 263 (613)
++|+++.+++ .|-...+|.|+.++|+ ||... .-..-+++++|| ++-+.++.+++... .. ++
T Consensus 129 eam~Er~~t~--g~~~~~lp~rfiv~AT-N~LPE----------~g~~leAL~DRF-liri~vp~l~~~~~e~~----lL 190 (498)
T PRK13531 129 TAINERRFRN--GAHEEKIPMRLLVTAS-NELPE----------ADSSLEALYDRM-LIRLWLDKVQDKANFRS----ML 190 (498)
T ss_pred HHHHhCeEec--CCeEEeCCCcEEEEEC-CCCcc----------cCCchHHhHhhE-EEEEECCCCCchHHHHH----HH
Confidence 9999999997 5778899999999998 87521 112335799999 88888888864322 22 22
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHH
Q psy2640 264 ASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFY 343 (613)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Y 343 (613)
........ . .....+.++.+.+..+...++ +..++++..++|.+.-
T Consensus 191 ~~~~~~~~---------------------~---------~~~~~~vis~eel~~lq~~v~----~V~v~d~v~eyI~~L~ 236 (498)
T PRK13531 191 TSQQDEND---------------------N---------PVPASLQITDEEYQQWQKEIG----KITLPDHVFELIFQLR 236 (498)
T ss_pred Hccccccc---------------------C---------CCcccCCCCHHHHHHHHHHhc----ceeCCHHHHHHHHHHH
Confidence 21100000 0 000112366666666654444 4578888888888777
Q ss_pred HHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC---CccchhhHHHHHHH
Q psy2640 344 LNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC---PSIFGHEMVKAGLL 402 (613)
Q Consensus 344 v~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~---~~I~~~~~~k~gl~ 402 (613)
..+|.... ...+|+|-...++++++|+ |-++.|++|+++|+ +.++.|..-..-++
T Consensus 237 ~~lr~~r~---~~~~SpR~~~~l~~~akA~-A~l~GR~~V~p~Dv~ll~~vL~HRl~~~~~v 294 (498)
T PRK13531 237 QQLDALPN---APYVSDRRWKKAIRLLQAS-AFFSGRDAIAPIDLILLKDCLWHDAQSLNLL 294 (498)
T ss_pred HHHhcCCC---CCCcCcHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHhHHHhccCHHHHHHH
Confidence 66664321 2348999999999999999 99999999999999 55566655554433
No 32
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.96 E-value=2.7e-09 Score=122.09 Aligned_cols=186 Identities=22% Similarity=0.236 Sum_probs=133.1
Q ss_pred ccccCceEEEEeeC-CC-------Ce-eecCceeecccCceeccccccCCCcccccccchhccccccccccccccccccc
Q psy2640 93 STTSGLTVTLSREG-GG-------DF-ALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITM 163 (613)
Q Consensus 93 ~s~~gLta~~~~~~-~g-------~~-~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 163 (613)
.+-..|.+.+..++ .| .+ .+++|++..||||+++|||++.|+.
T Consensus 180 ~~~~~L~G~i~~~~~~g~~g~~~~~~~~i~~G~L~~AngGtL~Ldei~~L~~---------------------------- 231 (608)
T TIGR00764 180 AHAGALLGDVRHDPFQGSGGLGTPAHERVEAGAIHRAHKGVLYIDEIKTMPL---------------------------- 231 (608)
T ss_pred CChHHCccceeeccccCccccccCccccCCCCceEECCCCEEEEEChHhCCH----------------------------
Confidence 33455677766665 32 33 4689999999999999999999997
Q ss_pred ccccccccccccchHHHHHHHhhhcCCeEEEecc-----cc---eeecCCcceeecccCCCCCCCCCCccchhhcccccc
Q psy2640 164 SIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKA-----SV---VCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQA 235 (613)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~al~eameqq~isi~ka-----gi---~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~ 235 (613)
..|..|+++|+++++++... |. ....|+++-+++++||. +...+.++
T Consensus 232 --------------~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~-----------~l~~l~~~ 286 (608)
T TIGR00764 232 --------------EVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD-----------DLEGMHPA 286 (608)
T ss_pred --------------HHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH-----------HHhhcCHH
Confidence 47899999999999998643 11 23567888999999983 23458899
Q ss_pred cccccc---EEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCH
Q psy2640 236 LLSRFD---LVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPA 312 (613)
Q Consensus 236 llsRFD---Li~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~ 312 (613)
+++||+ +...+.+..+...+..
T Consensus 287 l~~rf~~y~v~v~~~~~~~~~~e~~------------------------------------------------------- 311 (608)
T TIGR00764 287 LRSRIRGYGYEVYMKDTMPDTPENR------------------------------------------------------- 311 (608)
T ss_pred HHHHhcCCeEEEEeeccCCCCHHHH-------------------------------------------------------
Confidence 999999 6555544322110000
Q ss_pred HHHHHHHHH-Hhhh-cCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCc
Q psy2640 313 PLLHKYLAY-ARKY-VSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPS 390 (613)
Q Consensus 313 ~lLrkYI~~-ar~~-~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~ 390 (613)
+.+.+||+. ++++ . .|.++++|.+.|.++|..+ ....+.++++.|+++.++|.|.++ |+.+..+.|+.+|+.+
T Consensus 312 ~~~~~~i~~~~~r~G~-l~~~s~~Av~~Li~~~~R~---ag~r~~lsl~~R~L~~llR~A~~i-A~~~~~~~I~~ehV~~ 386 (608)
T TIGR00764 312 DKLVQFVAQEVKKDGR-IPHFTRDAVEEIVREAQRR---AGRKDHLTLRLRELGGLVRAAGDI-AKSSGKVYVTAEHVLK 386 (608)
T ss_pred HHHHHHHHHHHHHhCC-CCcCCHHHHHHHHHHHHHH---HhcccccCCCHHHHHHHHHHHHHH-HHhcCCceecHHHHHH
Confidence 111222222 3332 2 4789999999998887654 233456889999999999999988 9999999999999965
Q ss_pred c
Q psy2640 391 I 391 (613)
Q Consensus 391 I 391 (613)
+
T Consensus 387 A 387 (608)
T TIGR00764 387 A 387 (608)
T ss_pred H
Confidence 4
No 33
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.75 E-value=1.6e-08 Score=92.86 Aligned_cols=121 Identities=25% Similarity=0.344 Sum_probs=75.5
Q ss_pred ccCCchhhhhHHHHhhhhh----cceEEEecccccccCceEEEEeeC-CCCeeecCceeecccCceeccccccCCCcccc
Q psy2640 64 LSNEPQHTINCLGLAMHHY----IISVYVCGNTSTTSGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQ 138 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~----~r~~~~~g~~~s~~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~ 138 (613)
|.|-|+..+..+.-++..+ .+-|-.+ .--.-+-+++..+.+. +++|.+.+|.+. .+++.+||++..++
T Consensus 4 leg~PG~GKT~la~~lA~~~~~~f~RIq~t-pdllPsDi~G~~v~~~~~~~f~~~~GPif---~~ill~DEiNrapp--- 76 (131)
T PF07726_consen 4 LEGVPGVGKTTLAKALARSLGLSFKRIQFT-PDLLPSDILGFPVYDQETGEFEFRPGPIF---TNILLADEINRAPP--- 76 (131)
T ss_dssp EES---HHHHHHHHHHHHHTT--EEEEE---TT--HHHHHEEEEEETTTTEEEEEE-TT----SSEEEEETGGGS-H---
T ss_pred eECCCccHHHHHHHHHHHHcCCceeEEEec-CCCCcccceeeeeeccCCCeeEeecChhh---hceeeecccccCCH---
Confidence 3567777765554332221 1112110 1122344667777777 889999999987 46999999999998
Q ss_pred cccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCC
Q psy2640 139 NGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGG 218 (613)
Q Consensus 139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g 218 (613)
++++|++|+|+++.|++. |....||..+.|+|+.||..
T Consensus 77 ---------------------------------------ktQsAlLeam~Er~Vt~~--g~~~~lp~pf~ViATqNp~e- 114 (131)
T PF07726_consen 77 ---------------------------------------KTQSALLEAMEERQVTID--GQTYPLPDPFFVIATQNPVE- 114 (131)
T ss_dssp ---------------------------------------HHHHHHHHHHHHSEEEET--TEEEE--SS-EEEEEE-TT--
T ss_pred ---------------------------------------HHHHHHHHHHHcCeEEeC--CEEEECCCcEEEEEecCccc-
Confidence 589999999999999997 88999999999999999962
Q ss_pred CCCCCccchhhccccccccccc
Q psy2640 219 HYNRAKTVAENLRMGQALLSRF 240 (613)
Q Consensus 219 ~~~~~~~~~e~i~l~~~llsRF 240 (613)
..+...||+++++||
T Consensus 115 -------~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 115 -------QEGTYPLPEAQLDRF 129 (131)
T ss_dssp --------S------HHHHTTS
T ss_pred -------cCceecCCHHHhccc
Confidence 134567999999999
No 34
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.70 E-value=1.5e-07 Score=100.24 Aligned_cols=257 Identities=22% Similarity=0.246 Sum_probs=167.9
Q ss_pred ccchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHH--hhhhhcceE-EEecccccccCceEEEEeeC----CCC
Q psy2640 37 RRCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGL--AMHHYIISV-YVCGNTSTTSGLTVTLSREG----GGD 109 (613)
Q Consensus 37 ~~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~l--a~~~~~r~~-~~~g~~~s~~gLta~~~~~~----~g~ 109 (613)
...+..++..+++..+..|-.- -+.|-|+..+..|.- |...-..-+ +-|-...+..=+++....+. +++
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~~v----ll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~ 100 (329)
T COG0714 25 VVVGDEEVIELALLALLAGGHV----LLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGE 100 (329)
T ss_pred eeeccHHHHHHHHHHHHcCCCE----EEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCe
Confidence 3444666666665555544332 256889988877753 333332222 22223444444555544433 568
Q ss_pred eeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcC
Q psy2640 110 FALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQ 189 (613)
Q Consensus 110 ~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameq 189 (613)
+.+.+|.+.-+.+++|++||+++.++ +.+.+|+++|+.
T Consensus 101 ~~~~~gpl~~~~~~ill~DEInra~p------------------------------------------~~q~aLl~~l~e 138 (329)
T COG0714 101 FRFVPGPLFAAVRVILLLDEINRAPP------------------------------------------EVQNALLEALEE 138 (329)
T ss_pred EEEecCCcccccceEEEEeccccCCH------------------------------------------HHHHHHHHHHhC
Confidence 89999999999889999999999998 589999999999
Q ss_pred CeEEEecccce-eecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcC
Q psy2640 190 QSISIAKASVV-CSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSG 268 (613)
Q Consensus 190 q~isi~kagi~-~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~ 268 (613)
..+++. |.. ..+|-.+.|+|++||.. ......+|+++++|| ++.+-++.|++.....+ ++....+
T Consensus 139 ~~vtv~--~~~~~~~~~~f~viaT~Np~e--------~~g~~~l~eA~ldRf-~~~~~v~yp~~~~e~~~---i~~~~~~ 204 (329)
T COG0714 139 RQVTVP--GLTTIRLPPPFIVIATQNPGE--------YEGTYPLPEALLDRF-LLRIYVDYPDSEEEERI---ILARVGG 204 (329)
T ss_pred cEEEEC--CcCCcCCCCCCEEEEccCccc--------cCCCcCCCHHHHhhE-EEEEecCCCCchHHHHH---HHHhCcc
Confidence 999998 444 78999999999999862 123345899999999 67888899865433332 2221110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHh
Q psy2640 269 FQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRK 348 (613)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~ 348 (613)
... .. . .....+.++..-+.++ ... +.+..++++..+++.......|.
T Consensus 205 ~~~-------------------~~--~-------~~~v~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~l~~~~~~ 252 (329)
T COG0714 205 VDE-------------------LD--L-------ESLVKPVLSDEELLRL---QKE-VKKVPVSDEVIDYIVTLVAALRE 252 (329)
T ss_pred ccc-------------------cc--c-------chhhhhhhCHHHHHHH---Hhh-hccCCchHHHHHHHHHHHHhhcc
Confidence 000 00 0 0001112332222222 111 21357788888888887777775
Q ss_pred ccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC
Q psy2640 349 HHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC 388 (613)
Q Consensus 349 ~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~ 388 (613)
... ....+++|....+...+++. |..+.++.+...|+
T Consensus 253 ~~~--~~~~~s~r~~~~~~~~~~~~-a~~~~~~~~~~~dv 289 (329)
T COG0714 253 APD--VALGASPRASLALLAALRAL-ALLDGRDAVIPDDV 289 (329)
T ss_pred ccc--hhccCCchhHHHHHHHHHhh-hhhcCccccCHHHH
Confidence 332 34567899999999999999 99999999999887
No 35
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.61 E-value=4e-07 Score=98.03 Aligned_cols=179 Identities=23% Similarity=0.270 Sum_probs=132.9
Q ss_pred CCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhh
Q psy2640 107 GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEA 186 (613)
Q Consensus 107 ~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ea 186 (613)
.|.-.++||-|--||+||+.+||.+-+.+ .-..+|+.+
T Consensus 130 ~g~~af~PGlLa~AnRGIlYvDEvnlL~d------------------------------------------~lvd~LLd~ 167 (423)
T COG1239 130 EGPKAFQPGLLARANRGILYVDEVNLLDD------------------------------------------HLVDALLDV 167 (423)
T ss_pred cCccccCCcchhhccCCEEEEeccccccH------------------------------------------HHHHHHHHH
Confidence 47889999999999999999999999998 367899999
Q ss_pred hcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhh
Q psy2640 187 MEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASL 266 (613)
Q Consensus 187 meqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~ 266 (613)
|+.+.-.|-..|+..+.|+++.+++++||-.| .|-++||+||.+-..+--..+.+.-..+.+..+...
T Consensus 168 aaeG~n~vereGisi~hpa~fvligTmNPEeG------------eLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~ 235 (423)
T COG1239 168 AAEGVNDVEREGISIRHPARFLLIGTMNPEEG------------ELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFE 235 (423)
T ss_pred HHhCCceeeeCceeeccCccEEEEeecCcccc------------ccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhh
Confidence 99988788888999999999999999999644 377889999998776655555444444444333211
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHH----------HHHHhhhcCCCcCChHHH
Q psy2640 267 SGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKY----------LAYARKYVSKPELSTEAA 336 (613)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkY----------I~~ar~~~~~P~Ls~eA~ 336 (613)
..|..++.+| |.-||+-++...+++.+.
T Consensus 236 ------------------------------------------~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~ 273 (423)
T COG1239 236 ------------------------------------------AVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAE 273 (423)
T ss_pred ------------------------------------------cCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHH
Confidence 1233444444 444555554557788887
Q ss_pred HHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCcc
Q psy2640 337 LLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSI 391 (613)
Q Consensus 337 ~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I 391 (613)
..+.+....+--. ..|.--.+.|.+.|+ |-++++..|+.+|+.+.
T Consensus 274 ~~ia~~~~~~~v~---------g~radi~~~r~a~a~-aa~~Gr~~v~~~Di~~a 318 (423)
T COG1239 274 TKIAELCARLAVD---------GHRADIVVVRAAKAL-AALRGRTEVEEEDIREA 318 (423)
T ss_pred HHHHHHHHHhccC---------CCchhhHHHHHHHHH-HHhcCceeeehhhHHHH
Confidence 7777765544321 245556788999999 99999999999888544
No 36
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.58 E-value=3.9e-07 Score=94.08 Aligned_cols=153 Identities=18% Similarity=0.242 Sum_probs=104.1
Q ss_pred eecCceeec--ccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhc
Q psy2640 111 ALEAGALVL--ADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAME 188 (613)
Q Consensus 111 ~le~GalvL--ad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eame 188 (613)
...+|+++. +.||+++|||+++++. +.+..|+++||
T Consensus 93 ~~~~g~l~~A~~~g~~lllDEi~r~~~------------------------------------------~~q~~Ll~~Le 130 (262)
T TIGR02640 93 NWVDNRLTLAVREGFTLVYDEFTRSKP------------------------------------------ETNNVLLSVFE 130 (262)
T ss_pred eecCchHHHHHHcCCEEEEcchhhCCH------------------------------------------HHHHHHHHHhc
Confidence 445888875 6889999999999988 57899999999
Q ss_pred CCeEEEeccc---ceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHh
Q psy2640 189 QQSISIAKAS---VVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMAS 265 (613)
Q Consensus 189 qq~isi~kag---i~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~ 265 (613)
++.++++..+ -....+..+-|+|++||.. | ...-.++++|++|| ..+-.+.|+.+....|. ..
T Consensus 131 ~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~--~------~g~~~l~~aL~~R~--~~i~i~~P~~~~e~~Il----~~ 196 (262)
T TIGR02640 131 EGVLELPGKRGTSRYVDVHPEFRVIFTSNPVE--Y------AGVHETQDALLDRL--ITIFMDYPDIDTETAIL----RA 196 (262)
T ss_pred CCeEEccCCCCCCceEecCCCCEEEEeeCCcc--c------cceecccHHHHhhc--EEEECCCCCHHHHHHHH----HH
Confidence 9999997432 2334667888999999951 1 12223588999998 45555667654333321 11
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHH
Q psy2640 266 LSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLN 345 (613)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~ 345 (613)
+ ..+.++..+.+.+.+..
T Consensus 197 ~--------------------------------------------------------------~~~~~~~~~~iv~~~~~ 214 (262)
T TIGR02640 197 K--------------------------------------------------------------TDVAEDSAATIVRLVRE 214 (262)
T ss_pred h--------------------------------------------------------------hCCCHHHHHHHHHHHHH
Confidence 1 11334455666777788
Q ss_pred HHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC
Q psy2640 346 LRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC 388 (613)
Q Consensus 346 lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~ 388 (613)
+|..+ .....++|.+-.+.|.++++ ++++.+.++|+
T Consensus 215 ~R~~~---~~~~~~~r~~i~~~~~~~~~----~~~~~~~~~~~ 250 (262)
T TIGR02640 215 FRASG---DEITSGLRASLMIAEVATQQ----DIPVDVDDEDF 250 (262)
T ss_pred HHhhC---CccCCcHHHHHHHHHHHHHc----CCCCCCCcHHH
Confidence 88322 22455788887777777544 67888887776
No 37
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.47 E-value=4.2e-06 Score=88.62 Aligned_cols=151 Identities=14% Similarity=0.136 Sum_probs=98.3
Q ss_pred ccCCchhhhhHHHH--hhhhhcceEEE-ecccccccCceE---EEEeeCCCCeeecCceeec--ccCceeccccccCCCc
Q psy2640 64 LSNEPQHTINCLGL--AMHHYIISVYV-CGNTSTTSGLTV---TLSREGGGDFALEAGALVL--ADQGVCCIDEFDKMSA 135 (613)
Q Consensus 64 l~~~p~~~~~~l~l--a~~~~~r~~~~-~g~~~s~~gLta---~~~~~~~g~~~le~GalvL--ad~gv~ciDEfdkm~~ 135 (613)
|.|-|+..+..+.. |...-..-+-+ +....+..-|++ .+.+++.+.+.+..|.+.. ..|+++++||+|..++
T Consensus 69 L~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p 148 (327)
T TIGR01650 69 VQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRP 148 (327)
T ss_pred EEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhccCH
Confidence 57888888866654 33322111222 222223322333 3334444446778898866 4678899999999987
Q ss_pred ccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhc-CCeEEEecccceeecCCcceeecccC
Q psy2640 136 QHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAME-QQSISIAKASVVCSLPARTSVIAAAN 214 (613)
Q Consensus 136 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eame-qq~isi~kagi~~~l~ar~svlAaaN 214 (613)
+...+|+..+| .+.+++..-+-.-.-+-.+-++|++|
T Consensus 149 ------------------------------------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~N 186 (327)
T TIGR01650 149 ------------------------------------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATAN 186 (327)
T ss_pred ------------------------------------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeC
Confidence 57889999999 56899976554333334688999999
Q ss_pred CCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHH
Q psy2640 215 PVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLL 258 (613)
Q Consensus 215 P~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~l 258 (613)
|.+.- |..--..+...+++++++|| ++.+-+|.++++....|
T Consensus 187 p~g~G-d~~G~y~Gt~~l~~A~lDRF-~i~~~~~Yp~~e~E~~I 228 (327)
T TIGR01650 187 TIGLG-DTTGLYHGTQQINQAQMDRW-SIVTTLNYLEHDNEAAI 228 (327)
T ss_pred CCCcC-CCCcceeeeecCCHHHHhhe-eeEeeCCCCCHHHHHHH
Confidence 98522 22222456778999999999 77777888887655554
No 38
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.39 E-value=1.8e-06 Score=99.19 Aligned_cols=184 Identities=22% Similarity=0.222 Sum_probs=130.5
Q ss_pred ccccccCceEEEEeeC-------CCCeee-cCceeecccCceeccccccCCCcccccccchhcccccccccccccccccc
Q psy2640 91 NTSTTSGLTVTLSREG-------GGDFAL-EAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFIT 162 (613)
Q Consensus 91 ~~~s~~gLta~~~~~~-------~g~~~l-e~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 162 (613)
++.+..-|.+.+..++ ++.+.. +||++..|+||+++|||.+.|+.
T Consensus 188 ~~p~~~~LfG~i~~~~~~~Gg~~t~~~~~i~~G~L~kAnGGtL~LDei~~L~~--------------------------- 240 (637)
T PRK13765 188 TGAHAGALLGDVRHDPFQSGGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDL--------------------------- 240 (637)
T ss_pred CCCCHHHcCCccccccccccccccCccccCCCCceeECCCcEEEEeChHhCCH---------------------------
Confidence 3444566888887663 345554 99999999999999999999977
Q ss_pred cccccccccccccchHHHHHHHhhhcCCeEEEecc----cc----eeecCCcceeecccCCCCCCCCCCccchhhccccc
Q psy2640 163 MSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKA----SV----VCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQ 234 (613)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~al~eameqq~isi~ka----gi----~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~ 234 (613)
..|..|+.+|+++++.+... +. ..+.|+.+-+++++||- ..+ .+.+
T Consensus 241 ---------------~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~---------ll~--~~dp 294 (637)
T PRK13765 241 ---------------ESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLD---------ALE--NMHP 294 (637)
T ss_pred ---------------HHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcC---------HHH--hhhH
Confidence 47899999999999988421 11 34567777899999982 111 2356
Q ss_pred ccccccc---EEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCC
Q psy2640 235 ALLSRFD---LVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIP 311 (613)
Q Consensus 235 ~llsRFD---Li~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~ 311 (613)
.|.+||. .-..+ . ....-.
T Consensus 295 dL~~rfk~~~v~v~f-------------------------------------------------~---------~~~~d~ 316 (637)
T PRK13765 295 ALRSRIKGYGYEVYM-------------------------------------------------R---------DTMEDT 316 (637)
T ss_pred HHHHHhccCeEEEEc-------------------------------------------------c---------cccCCC
Confidence 6777773 11111 0 001124
Q ss_pred HHHHHHHHHHHhhhc----CCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhcccc
Q psy2640 312 APLLHKYLAYARKYV----SKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSL 387 (613)
Q Consensus 312 ~~lLrkYI~~ar~~~----~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd 387 (613)
.+..++|+.|..+.+ ..|.++++|...|.++|...- ...+.+.+..|++..|+|.|..+ |+.+..+.++.+|
T Consensus 317 ~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~a---g~r~~lsl~~~~l~~l~r~a~~~-a~~~~~~~i~~~~ 392 (637)
T PRK13765 317 PENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRA---GRKGHLTLKLRDLGGLVRVAGDI-ARSEGAELTTAEH 392 (637)
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHh---CCccccccCHHHHHHHHHHHHHH-HHhhccceecHHH
Confidence 477788888755422 147899999999999987543 22345677889999999999988 9999999998888
Q ss_pred CC
Q psy2640 388 CP 389 (613)
Q Consensus 388 ~~ 389 (613)
+.
T Consensus 393 v~ 394 (637)
T PRK13765 393 VL 394 (637)
T ss_pred HH
Confidence 74
No 39
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.99 E-value=7.6e-06 Score=75.66 Aligned_cols=125 Identities=23% Similarity=0.367 Sum_probs=82.2
Q ss_pred ccCCchhhhhHHHHhhh-hhcce--EEEecccccccCceEEEEeeCCCCeeecCceeecc--cCceeccccccCCCcccc
Q psy2640 64 LSNEPQHTINCLGLAMH-HYIIS--VYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLA--DQGVCCIDEFDKMSAQHQ 138 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~-~~~r~--~~~~g~~~s~~gLta~~~~~~~g~~~le~GalvLa--d~gv~ciDEfdkm~~~~~ 138 (613)
|.|.|+..+.-|..++. ...+. .+.+...++..-|.....-+ .+.+..++|.++.| .+++|+|||+++.+.
T Consensus 4 L~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~l~~a~~~~~il~lDEin~a~~--- 79 (139)
T PF07728_consen 4 LVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGPLVRAMRKGGILVLDEINRAPP--- 79 (139)
T ss_dssp EEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-CCCTTHHEEEEEEESSCGG--H---
T ss_pred EECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec-ccccccccccccccccceeEEEECCcccCCH---
Confidence 46788888866654322 22222 23334445555566554443 56777788888855 899999999999987
Q ss_pred cccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCC------cceeecc
Q psy2640 139 NGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPA------RTSVIAA 212 (613)
Q Consensus 139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~a------r~svlAa 212 (613)
...++|+.+++++.+.+...+.....+. .+.++|+
T Consensus 80 ---------------------------------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t 120 (139)
T PF07728_consen 80 ---------------------------------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIAT 120 (139)
T ss_dssp ---------------------------------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEE
T ss_pred ---------------------------------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEE
Confidence 4788999999999999887776655555 4999999
Q ss_pred cCCCCCCCCCCccchhhccccccccccc
Q psy2640 213 ANPVGGHYNRAKTVAENLRMGQALLSRF 240 (613)
Q Consensus 213 aNP~~g~~~~~~~~~e~i~l~~~llsRF 240 (613)
+||.. ...-.++++|++||
T Consensus 121 ~N~~~---------~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 121 MNPRD---------KGRKELSPALLDRF 139 (139)
T ss_dssp ESSST-----------TTTTCHHHHTT-
T ss_pred EcCCC---------CCcCcCCHHHHhhC
Confidence 99974 23446999999998
No 40
>PHA02244 ATPase-like protein
Probab=97.58 E-value=0.00023 Score=76.62 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=69.9
Q ss_pred cCceee--cccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCC
Q psy2640 113 EAGALV--LADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQ 190 (613)
Q Consensus 113 e~Galv--Lad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq 190 (613)
+.|++. ++.||+|+|||++.+++ +....|+.+++++
T Consensus 170 ~dgpLl~A~~~GgvLiLDEId~a~p------------------------------------------~vq~~L~~lLd~r 207 (383)
T PHA02244 170 HETPFYEAFKKGGLFFIDEIDASIP------------------------------------------EALIIINSAIANK 207 (383)
T ss_pred cchHHHHHhhcCCEEEEeCcCcCCH------------------------------------------HHHHHHHHHhccC
Confidence 555553 57899999999999998 4788999999999
Q ss_pred eEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCC
Q psy2640 191 SISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPD 251 (613)
Q Consensus 191 ~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~ 251 (613)
.+.+. |-....+-++.++|++||.+..|+ ..+...-.+++++++||- ++-.|.+.
T Consensus 208 ~l~l~--g~~i~~h~~FRlIATsN~~~~G~~--~~y~G~k~L~~AllDRFv--~I~~dyp~ 262 (383)
T PHA02244 208 FFDFA--DERVTAHEDFRVISAGNTLGKGAD--HIYVARNKIDGATLDRFA--PIEFDYDE 262 (383)
T ss_pred eEEec--CcEEecCCCEEEEEeeCCCccCcc--cccCCCcccCHHHHhhcE--EeeCCCCc
Confidence 76655 656677889999999999865553 234456679999999993 34456654
No 41
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.27 E-value=0.001 Score=75.54 Aligned_cols=149 Identities=18% Similarity=0.165 Sum_probs=91.0
Q ss_pred cchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhhhh-------hcce---EEEeccccc----ccCce----
Q psy2640 38 RCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHH-------YIIS---VYVCGNTST----TSGLT---- 99 (613)
Q Consensus 38 ~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~~~-------~~r~---~~~~g~~~s----~~gLt---- 99 (613)
..+.....+.+...+++.....+ -+.|.|+..+..+..++|. .|+. -|+.=..++ .-++.
T Consensus 67 iiGqs~~i~~l~~al~~~~~~~v--Li~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li 144 (531)
T TIGR02902 67 IIGQEEGIKALKAALCGPNPQHV--IIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLI 144 (531)
T ss_pred eeCcHHHHHHHHHHHhCCCCceE--EEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhc
Confidence 34444444555555555433322 3689999999888887764 2221 222111111 11111
Q ss_pred EEEEeeC----------CCCeeecCceeecccCceeccccccCCCcccccccchhccccccccccccccccccccccccc
Q psy2640 100 VTLSREG----------GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVM 169 (613)
Q Consensus 100 a~~~~~~----------~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 169 (613)
.++ .++ +|.....+|++-.|++|+++|||++.|+.
T Consensus 145 ~~~-~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~---------------------------------- 189 (531)
T TIGR02902 145 GSV-HDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP---------------------------------- 189 (531)
T ss_pred CCc-ccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH----------------------------------
Confidence 111 111 23345678999999999999999999998
Q ss_pred ccccccchHHHHHHHhhhcCCeEEEecccc---------------eeecCCcceeecccCCCCCCCCCCccchhhccccc
Q psy2640 170 GEKRHTMSAQHQALLEAMEQQSISIAKASV---------------VCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQ 234 (613)
Q Consensus 170 ~~~~~~~~~~~~al~eameqq~isi~kagi---------------~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~ 234 (613)
..+..|+.+||++.+.+..+.. ...+|+.+-+++|++.- + -.+++
T Consensus 190 --------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~-----p-------~~L~p 249 (531)
T TIGR02902 190 --------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRN-----P-------EEIPP 249 (531)
T ss_pred --------HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCC-----c-------ccCCh
Confidence 4788999999999887652211 23467788777766531 0 13779
Q ss_pred cccccccEE
Q psy2640 235 ALLSRFDLV 243 (613)
Q Consensus 235 ~llsRFDLi 243 (613)
++.||+.-+
T Consensus 250 aLrsR~~~I 258 (531)
T TIGR02902 250 ALRSRCVEI 258 (531)
T ss_pred HHhhhhhee
Confidence 999998543
No 42
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.011 Score=68.50 Aligned_cols=63 Identities=22% Similarity=0.186 Sum_probs=50.0
Q ss_pred CCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCccchh
Q psy2640 328 KPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGH 394 (613)
Q Consensus 328 ~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~ 394 (613)
-|.++..|.+.|..+- ++.....+..++.+|++-.|+|.|--. |+++.++.++.+|+.+++..
T Consensus 336 ip~~~~~Av~~li~~a---~R~Ag~~~~Ltl~~rdl~~lv~~A~~i-a~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 336 IPHLDKDAVEELIREA---ARRAGDQNKLTLRLRDLGNLVREAGDI-AVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred CCCCCHHHHHHHHHHH---HHhccccceeccCHHHHHHHHHHhhHH-HhcCCcccCcHHHHHHHHHh
Confidence 3888888888776533 333355577899999999999999888 99999999999999666654
No 43
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.44 E-value=0.012 Score=64.89 Aligned_cols=156 Identities=18% Similarity=0.200 Sum_probs=85.1
Q ss_pred hhccchhhhHHHHhhhhhccc---ch--------hhhhh---hccCCchhhhhHHHHhhhhhcceEE--EecccccccCc
Q psy2640 35 EERRCYLVDIKVLMNDQIFND---QW--------KTFLQ---NLSNEPQHTINCLGLAMHHYIISVY--VCGNTSTTSGL 98 (613)
Q Consensus 35 ~~~~~~~~dvK~~i~~qlfgg---~~--------k~~~~---~l~~~p~~~~~~l~la~~~~~r~~~--~~g~~~s~~gL 98 (613)
.....|.+++|+++...+..+ .. ..+.. -+.|-|+.++..|.-+++...-.-| +.+..-+..|.
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gy 149 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGY 149 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCc
Confidence 345788999999886554311 10 00111 1678888888888766654321111 11111111221
Q ss_pred eEEEEeeCCC----CeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccc
Q psy2640 99 TVTLSREGGG----DFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRH 174 (613)
Q Consensus 99 ta~~~~~~~g----~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 174 (613)
.. .+..+ -+.-..|.+-.|.+|+++|||+|++.....| | +..+-+.++
T Consensus 150 vG---~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~------------------~----~~~~d~s~~--- 201 (412)
T PRK05342 150 VG---EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSEN------------------P----SITRDVSGE--- 201 (412)
T ss_pred cc---chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCC------------------C----CcCCCcccH---
Confidence 11 01000 0001123445678999999999999862000 0 000011111
Q ss_pred cchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCC---CCCCC
Q psy2640 175 TMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPV---GGHYN 221 (613)
Q Consensus 175 ~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~---~g~~~ 221 (613)
..+++|++.||...+.++-.|....-...+.++++.|+. +|.|.
T Consensus 202 ---~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~ 248 (412)
T PRK05342 202 ---GVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFD 248 (412)
T ss_pred ---HHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeeccccc
Confidence 368999999998888886555433334778899999995 46664
No 44
>CHL00181 cbbX CbbX; Provisional
Probab=96.43 E-value=0.022 Score=59.79 Aligned_cols=80 Identities=26% Similarity=0.138 Sum_probs=48.7
Q ss_pred eeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEe
Q psy2640 116 ALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIA 195 (613)
Q Consensus 116 alvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~ 195 (613)
.+-.|.+||++|||++.+..+. +.+ ++. ......|...||++.
T Consensus 117 ~l~~a~ggVLfIDE~~~l~~~~-~~~-------------------------~~~-------~e~~~~L~~~me~~~---- 159 (287)
T CHL00181 117 VLKKAMGGVLFIDEAYYLYKPD-NER-------------------------DYG-------SEAIEILLQVMENQR---- 159 (287)
T ss_pred HHHHccCCEEEEEccchhccCC-Ccc-------------------------chH-------HHHHHHHHHHHhcCC----
Confidence 3445789999999999984310 000 000 135678899998753
Q ss_pred cccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCC
Q psy2640 196 KASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDN 249 (613)
Q Consensus 196 kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~ 249 (613)
..+.|++|.++. .+..-..+.|++.+||+.++.+-+.
T Consensus 160 ---------~~~~vI~ag~~~--------~~~~~~~~np~L~sR~~~~i~F~~~ 196 (287)
T CHL00181 160 ---------DDLVVIFAGYKD--------RMDKFYESNPGLSSRIANHVDFPDY 196 (287)
T ss_pred ---------CCEEEEEeCCcH--------HHHHHHhcCHHHHHhCCceEEcCCc
Confidence 345566665542 2223345668999999976665444
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.37 E-value=0.056 Score=57.62 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=29.9
Q ss_pred ccccHHHHHHHHHhCCCCHHHHHHHHH-HHhhCCcEEecCCce
Q psy2640 458 SVFTVTELKQLATSANISVDNFFTFLT-SLNDQGFLLKKGKQL 499 (613)
Q Consensus 458 ~~~t~~el~~~a~~~gi~~~~~~~~i~-~L~~~G~i~~~g~~~ 499 (613)
+.++.+. +|...|.+...+++.++ .|-+.|++...+.|.
T Consensus 275 ~~~~~~~---~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~gr 314 (328)
T PRK00080 275 GPVGLDT---LAAALGEERDTIEDVYEPYLIQQGFIQRTPRGR 314 (328)
T ss_pred CceeHHH---HHHHHCCCcchHHHHhhHHHHHcCCcccCCchH
Confidence 3466665 47778898899999999 899999997666554
No 46
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.26 E-value=0.011 Score=70.16 Aligned_cols=166 Identities=18% Similarity=0.210 Sum_probs=89.2
Q ss_pred hccchhhhHHHHhhh--hhcccch--hhhhhhccCCchhhhhHHHHhhhh-hcceEEEeccccc--ccCceEEEEeeCCC
Q psy2640 36 ERRCYLVDIKVLMND--QIFNDQW--KTFLQNLSNEPQHTINCLGLAMHH-YIISVYVCGNTST--TSGLTVTLSREGGG 108 (613)
Q Consensus 36 ~~~~~~~dvK~~i~~--qlfgg~~--k~~~~~l~~~p~~~~~~l~la~~~-~~r~~~~~g~~~s--~~gLta~~~~~~~g 108 (613)
...+|+.++|+.++- ....... +.-.=.+.|-|+.++..+..++.. ..+..+...-++. ..-+.+. ..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~-----~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH-----RR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc-----hh
Confidence 458999999998873 2222111 110112789999888666654332 2333222111111 1111110 00
Q ss_pred Cee-ecCceee--cc----cCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHH
Q psy2640 109 DFA-LEAGALV--LA----DQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQ 181 (613)
Q Consensus 109 ~~~-le~Galv--La----d~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (613)
.|. --+|.++ ++ .+.++++||+||++...+ + +-.+
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~-----------------g---------------------~~~~ 438 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMR-----------------G---------------------DPAS 438 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccC-----------------C---------------------CHHH
Confidence 111 1244432 22 356899999999987210 0 1357
Q ss_pred HHHhhhcC-CeEEEecc--cceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHH
Q psy2640 182 ALLEAMEQ-QSISIAKA--SVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLL 258 (613)
Q Consensus 182 al~eameq-q~isi~ka--gi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~l 258 (613)
+|+|.|+. |..++.-. .+...+ .++.++|++|+. .+|++|++|+++ +. .....++.-..|
T Consensus 439 aLlevld~~~~~~~~d~~~~~~~dl-s~v~~i~TaN~~--------------~i~~aLl~R~~i-i~-~~~~t~eek~~I 501 (784)
T PRK10787 439 ALLEVLDPEQNVAFSDHYLEVDYDL-SDVMFVATSNSM--------------NIPAPLLDRMEV-IR-LSGYTEDEKLNI 501 (784)
T ss_pred HHHHHhccccEEEEecccccccccC-CceEEEEcCCCC--------------CCCHHHhcceee-ee-cCCCCHHHHHHH
Confidence 99999984 55555421 122233 566888998852 389999999974 33 344444445555
Q ss_pred HHH
Q psy2640 259 SEH 261 (613)
Q Consensus 259 a~~ 261 (613)
+++
T Consensus 502 a~~ 504 (784)
T PRK10787 502 AKR 504 (784)
T ss_pred HHH
Confidence 544
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.14 E-value=0.073 Score=55.76 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=31.8
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHH-HHhhCCcEEecCCceEE
Q psy2640 459 VFTVTELKQLATSANISVDNFFTFLT-SLNDQGFLLKKGKQLYQ 501 (613)
Q Consensus 459 ~~t~~el~~~a~~~gi~~~~~~~~i~-~L~~~G~i~~~g~~~~~ 501 (613)
.++..+ +|...|.+...+...++ .|-+.|.+..++.|.+.
T Consensus 255 ~~~~~~---ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~~~ 295 (305)
T TIGR00635 255 PVGLKT---LAAALGEDADTIEDVYEPYLLQIGFLQRTPRGRIA 295 (305)
T ss_pred cccHHH---HHHHhCCCcchHHHhhhHHHHHcCCcccCCchhhh
Confidence 355544 68888999999999999 69999999888777644
No 48
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.08 E-value=0.11 Score=53.50 Aligned_cols=18 Identities=33% Similarity=0.222 Sum_probs=14.9
Q ss_pred ecccCceeccccccCCCc
Q psy2640 118 VLADQGVCCIDEFDKMSA 135 (613)
Q Consensus 118 vLad~gv~ciDEfdkm~~ 135 (613)
-.|.+||++|||++.+..
T Consensus 102 ~~a~~~VL~IDE~~~L~~ 119 (261)
T TIGR02881 102 KKALGGVLFIDEAYSLAR 119 (261)
T ss_pred HhccCCEEEEechhhhcc
Confidence 446789999999999864
No 49
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.07 E-value=0.054 Score=56.77 Aligned_cols=76 Identities=24% Similarity=0.132 Sum_probs=46.1
Q ss_pred eecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEec
Q psy2640 117 LVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAK 196 (613)
Q Consensus 117 lvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~k 196 (613)
+--|.+|+++|||++.+.... +.+ ++. ......|.+.|+++.
T Consensus 117 ~~~a~~gvL~iDEi~~L~~~~-~~~-------------------------~~~-------~~~~~~Ll~~le~~~----- 158 (284)
T TIGR02880 117 LKRAMGGVLFIDEAYYLYRPD-NER-------------------------DYG-------QEAIEILLQVMENQR----- 158 (284)
T ss_pred HHHccCcEEEEechhhhccCC-Ccc-------------------------chH-------HHHHHHHHHHHhcCC-----
Confidence 445788999999999884310 000 000 024678899998753
Q ss_pred ccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEe
Q psy2640 197 ASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFIL 246 (613)
Q Consensus 197 agi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l 246 (613)
.++.||++.+|. ....-..+.+++.+||+..+.+
T Consensus 159 --------~~~~vI~a~~~~--------~~~~~~~~np~L~sR~~~~i~f 192 (284)
T TIGR02880 159 --------DDLVVILAGYKD--------RMDSFFESNPGFSSRVAHHVDF 192 (284)
T ss_pred --------CCEEEEEeCCcH--------HHHHHHhhCHHHHhhCCcEEEe
Confidence 445677776653 1122235678899999865444
No 50
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.87 E-value=0.13 Score=60.95 Aligned_cols=186 Identities=19% Similarity=0.220 Sum_probs=96.4
Q ss_pred cceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCC
Q psy2640 206 RTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTEN 285 (613)
Q Consensus 206 r~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~ 285 (613)
+..+++|+||. .+...+...++|.+||+- +.++.|+.+.-..|-..+...+..
T Consensus 315 ~i~vIgATt~~--------E~~~~~~~D~AL~rRFq~--I~v~ePs~~~~~~IL~~~~~~ye~----------------- 367 (758)
T PRK11034 315 KIRVIGSTTYQ--------EFSNIFEKDRALARRFQK--IDITEPSIEETVQIINGLKPKYEA----------------- 367 (758)
T ss_pred CeEEEecCChH--------HHHHHhhccHHHHhhCcE--EEeCCCCHHHHHHHHHHHHHHhhh-----------------
Confidence 34577888873 122335688999999984 566777766555555544333210
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHH
Q psy2640 286 PNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLES 365 (613)
Q Consensus 286 ~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEs 365 (613)
.+...++.+.++.-+.++.++++.=.+++.|.+.|-+.....|-.........++..+.+.
T Consensus 368 -------------------~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~ 428 (758)
T PRK11034 368 -------------------HHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIES 428 (758)
T ss_pred -------------------ccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHH
Confidence 0112355566766666666666333678888888877765554321111122356566655
Q ss_pred HHHHHHhh------hhcchhhhhhccccCCccchhhHHHHHHHHhhh---CCcccCCCCCCCcceeecCCCCCCcchhhh
Q psy2640 366 LVRLTQDI------QAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALF---GGCHSTNGSRGDAHVLIVGDPGLGKSQMLH 436 (613)
Q Consensus 366 liRLseA~------~Ak~~l~~~v~~sd~~~I~~~~~~k~gl~l~l~---GG~~~~~~~rg~idil~vgdpGtgKSq~l~ 436 (613)
++.----+ ....+....+....--.|+|+......+.-... .|-. ++.+-.-.+|..|.||+||+.+.+
T Consensus 429 v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~--~~~kp~~~~Lf~GP~GvGKT~lAk 506 (758)
T PRK11034 429 VVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLG--HEHKPVGSFLFAGPTGVGKTEVTV 506 (758)
T ss_pred HHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhcccc--CCCCCcceEEEECCCCCCHHHHHH
Confidence 54211000 000111112222233556776554443322211 1221 111222257889999999999854
Q ss_pred HHH
Q psy2640 437 ACC 439 (613)
Q Consensus 437 ~~~ 439 (613)
+.+
T Consensus 507 ~LA 509 (758)
T PRK11034 507 QLS 509 (758)
T ss_pred HHH
Confidence 443
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.82 E-value=0.11 Score=61.61 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=97.7
Q ss_pred ceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q psy2640 207 TSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENP 286 (613)
Q Consensus 207 ~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~ 286 (613)
..+|+|+||. -+...+...++|.+||.. +-+..|+.+.-..+-+.+...+..
T Consensus 312 i~~IgaTt~~--------e~~~~~~~d~al~rRf~~--i~v~~p~~~~~~~il~~~~~~~e~------------------ 363 (731)
T TIGR02639 312 LRCIGSTTYE--------EYKNHFEKDRALSRRFQK--IDVGEPSIEETVKILKGLKEKYEE------------------ 363 (731)
T ss_pred eEEEEecCHH--------HHHHHhhhhHHHHHhCce--EEeCCCCHHHHHHHHHHHHHHHHh------------------
Confidence 3467888873 122345678999999984 456666665555555544433210
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHH
Q psy2640 287 NSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESL 366 (613)
Q Consensus 287 ~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsl 366 (613)
.....++.+.+..-+.++.++++.-.+++.|.+.|-+.....|-.........+|.+++...
T Consensus 364 ------------------~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~ 425 (731)
T TIGR02639 364 ------------------FHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENV 425 (731)
T ss_pred ------------------ccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHH
Confidence 01113667788877888888774446788888888776654442211112234666666655
Q ss_pred HHHHHhhhhcchhh----------hhhccccCCccchhhHHHHHHHHhhh---CCcccCCCCCCCcceeecCCCCCCcch
Q psy2640 367 VRLTQDIQAEPNLF----------KLLVNSLCPSIFGHEMVKAGLLLALF---GGCHSTNGSRGDAHVLIVGDPGLGKSQ 433 (613)
Q Consensus 367 iRLseA~~Ak~~l~----------~~v~~sd~~~I~~~~~~k~gl~l~l~---GG~~~~~~~rg~idil~vgdpGtgKSq 433 (613)
+.-- ..+-.. ..+....-..|+|++.....+.-... -|.. ++.+-.-.+|.+|.||+||+.
T Consensus 426 i~~~----tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~--~~~~p~~~~lf~Gp~GvGKT~ 499 (731)
T TIGR02639 426 VAKM----AHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLG--NPNKPVGSFLFTGPTGVGKTE 499 (731)
T ss_pred HHHH----hCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCC--CCCCCceeEEEECCCCccHHH
Confidence 4321 111111 11222222566776655444432221 1111 122222247789999999999
Q ss_pred hhhHHH
Q psy2640 434 MLHACC 439 (613)
Q Consensus 434 ~l~~~~ 439 (613)
+.++.+
T Consensus 500 lA~~la 505 (731)
T TIGR02639 500 LAKQLA 505 (731)
T ss_pred HHHHHH
Confidence 854443
No 52
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.36 E-value=0.047 Score=60.22 Aligned_cols=159 Identities=19% Similarity=0.170 Sum_probs=83.5
Q ss_pred hhccchhhhHHHHhhhhhcc---c------ch--h--hhhh---hccCCchhhhhHHHHhhhhhcce--EEEeccccccc
Q psy2640 35 EERRCYLVDIKVLMNDQIFN---D------QW--K--TFLQ---NLSNEPQHTINCLGLAMHHYIIS--VYVCGNTSTTS 96 (613)
Q Consensus 35 ~~~~~~~~dvK~~i~~qlfg---g------~~--k--~~~~---~l~~~p~~~~~~l~la~~~~~r~--~~~~g~~~s~~ 96 (613)
.....|.++.|+.+...+.. + .. + .+.. -+.|-|+.++..|.-+++..... +.+...+-+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~ 155 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEA 155 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccc
Confidence 45678899999988766531 1 01 0 0111 15688888888887666543211 11111111222
Q ss_pred CceEEEEeeC-CCCeeecCceeecccCceeccccccCCCcccccccchhccccccccccccccccccccccccccccccc
Q psy2640 97 GLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHT 175 (613)
Q Consensus 97 gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (613)
|+.+.-.... ++-....++.+..|.+|++++||+||+.....+ |... .-+.|+
T Consensus 156 gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~------------------~s~~----~dvsg~---- 209 (413)
T TIGR00382 156 GYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSEN------------------PSIT----RDVSGE---- 209 (413)
T ss_pred ccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcc------------------cccc----ccccch----
Confidence 2111100000 000112245566788999999999999872111 1100 011122
Q ss_pred chHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCC---CCCCC
Q psy2640 176 MSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPV---GGHYN 221 (613)
Q Consensus 176 ~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~---~g~~~ 221 (613)
..+++|++.||...++++..|....=...+.++.++|.. +|.|+
T Consensus 210 --~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~ 256 (413)
T TIGR00382 210 --GVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFV 256 (413)
T ss_pred --hHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeeccccc
Confidence 368899999986555665433222222567889999984 46554
No 53
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=95.08 E-value=0.049 Score=47.90 Aligned_cols=67 Identities=22% Similarity=0.294 Sum_probs=57.6
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhcc
Q psy2640 306 ELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVN 385 (613)
Q Consensus 306 ~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~ 385 (613)
.+..++...+++| | .|++++...|...+.... +|.|....++|+|..+ |+++..+.|..
T Consensus 28 ~Na~l~~~~l~~~-------~---~l~~~~~~~l~~~~~~~~----------lS~R~~~rilrvARTI-ADL~~~~~I~~ 86 (96)
T PF13335_consen 28 CNAQLPGEELRKY-------C---PLSSEAKKLLEQAAEKLN----------LSARGYHRILRVARTI-ADLEGSERITR 86 (96)
T ss_pred ccccCCHHHHHhH-------c---CCCHHHHHHHHHHHHHcC----------cCHHHHHHHHHHHHHH-HhHcCCCCCCH
Confidence 3445888999999 6 789999999999887554 8999999999999999 99999999999
Q ss_pred ccCCccch
Q psy2640 386 SLCPSIFG 393 (613)
Q Consensus 386 sd~~~I~~ 393 (613)
+|+.+.++
T Consensus 87 ~hi~EAl~ 94 (96)
T PF13335_consen 87 EHIAEALS 94 (96)
T ss_pred HHHHHHHh
Confidence 98866554
No 54
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=95.03 E-value=0.034 Score=64.11 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=31.3
Q ss_pred HHHHHHhhcccccccccChhHHHHHHHHh-hhcchhhh
Q psy2640 563 LYQLMSARAKCELREEASKQDAQDVIDIM-KWSLIDTS 599 (613)
Q Consensus 563 LiRLseArAkl~lre~vt~~Da~~vv~im-~~s~~~~~ 599 (613)
++|+++|+|.|+-|+.|+.+|+..|+++. .|.+.-..
T Consensus 230 ~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~hR~~~~p 267 (589)
T TIGR02031 230 AVRAAKAHAALHGRTEVTEEDLKLAVELVLLPRATRLP 267 (589)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhccCCC
Confidence 99999999999999999999999999864 45554433
No 55
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=94.75 E-value=0.035 Score=64.62 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=29.4
Q ss_pred HHHHHHhhcccccccccChhHHHHHHHH-hhhcc
Q psy2640 563 LYQLMSARAKCELREEASKQDAQDVIDI-MKWSL 595 (613)
Q Consensus 563 LiRLseArAkl~lre~vt~~Da~~vv~i-m~~s~ 595 (613)
++|+++|+|.|+.|++|+.+|+.+|+++ +.|.+
T Consensus 276 ~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~hR~ 309 (633)
T TIGR02442 276 MARAARALAALDGRRRVTAEDVREAAELVLPHRR 309 (633)
T ss_pred HHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999976 44544
No 56
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.56 E-value=0.025 Score=61.04 Aligned_cols=82 Identities=26% Similarity=0.271 Sum_probs=64.8
Q ss_pred CceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEE
Q psy2640 114 AGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSIS 193 (613)
Q Consensus 114 ~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~is 193 (613)
.|++..|++|+..++|+.|.+. +-...|+.+++++.+.
T Consensus 229 ~G~l~~aNrGi~~f~Ei~K~~~------------------------------------------~~l~~LL~~~qE~~v~ 266 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADI------------------------------------------KFLHPLLTATQEGNIK 266 (361)
T ss_pred cCccccccCceEEEeehhcCCH------------------------------------------HHHHHHhhhhhcceEe
Confidence 6999999999999999999988 4677899999999999
Q ss_pred EecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEE
Q psy2640 194 IAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFI 245 (613)
Q Consensus 194 i~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~ 245 (613)
+.. ....+|....|+|++||.. |+. ..+.+.++++++|+..|.+
T Consensus 267 ~~~--~~~~~~~d~liia~sNe~e--~~~----~~~~k~~eaf~dR~~~i~v 310 (361)
T smart00763 267 GTG--GFAMIPIDGLIIAHSNESE--WQR----FKSNKKNEALLDRIIKVKV 310 (361)
T ss_pred cCC--cccccccceEEEEeCCHHH--Hhh----hhccccchhhhhceEEEeC
Confidence 884 3347788889999999951 221 1123447999999985544
No 57
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.29 E-value=0.023 Score=55.14 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=56.4
Q ss_pred ceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEE
Q psy2640 115 GALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISI 194 (613)
Q Consensus 115 GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi 194 (613)
|..-.+++||+++|||||...+.. +++.++ + ...+.+|+..||.++++-
T Consensus 62 ~~v~~~~~gVVllDEidKa~~~~~-----------------~~~~v~--------~------~~V~~~LL~~le~g~~~d 110 (171)
T PF07724_consen 62 GYVGAEEGGVVLLDEIDKAHPSNS-----------------GGADVS--------G------EGVQNSLLQLLEGGTLTD 110 (171)
T ss_dssp CHHHHHHHTEEEEETGGGCSHTTT-----------------TCSHHH--------H------HHHHHHHHHHHHHSEEEE
T ss_pred ceeeccchhhhhhHHHhhcccccc-----------------ccchhh--------H------HHHHHHHHHHhcccceec
Confidence 444556778999999999987211 011111 0 036899999999999995
Q ss_pred ecccceeecCCcceeecccCCCCCCCCCC--------c----cchh--hccccccccccccEE
Q psy2640 195 AKASVVCSLPARTSVIAAANPVGGHYNRA--------K----TVAE--NLRMGQALLSRFDLV 243 (613)
Q Consensus 195 ~kagi~~~l~ar~svlAaaNP~~g~~~~~--------~----~~~e--~i~l~~~llsRFDLi 243 (613)
. .|....+ .+|.+++++|--....... . .+.. +-.++|.++.|||.|
T Consensus 111 ~-~g~~vd~-~n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 111 S-YGRTVDT-SNIIFIMTSNFGAEEIIDASRSGEAIEQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp T-TCCEEEG-TTEEEEEEESSSTHHHHHCHHHCTCCHHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred c-cceEEEe-CCceEEEecccccchhhhhhccccccHHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 4 4533333 4667788888431111100 0 0000 124888999999865
No 58
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.09 E-value=0.029 Score=54.23 Aligned_cols=107 Identities=18% Similarity=0.249 Sum_probs=69.9
Q ss_pred ccCCchhhhhHHHHhhhhh-cce--EEEeccccccc------CceEEEEeeC-CCCeeecCceeecccCceeccccccCC
Q psy2640 64 LSNEPQHTINCLGLAMHHY-IIS--VYVCGNTSTTS------GLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKM 133 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~-~r~--~~~~g~~~s~~------gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm 133 (613)
+.|.++..+..+.-++|.. +|. -|++=+.++-. -|.+. .+.. +|.-.-++|.+..|++|+++|||++.|
T Consensus 27 I~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~-~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L 105 (168)
T PF00158_consen 27 ITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGH-EKGAFTGARSDKKGLLEQANGGTLFLDEIEDL 105 (168)
T ss_dssp EECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEB-CSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS
T ss_pred EEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcc-ccccccccccccCCceeeccceEEeecchhhh
Confidence 5677888888888888864 332 22222222110 12221 1111 344445679999999999999999999
Q ss_pred CcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeeccc
Q psy2640 134 SAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAA 213 (613)
Q Consensus 134 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaa 213 (613)
+. ..+..|..+++.+++.-. |-....+.++=+++++
T Consensus 106 ~~------------------------------------------~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~RiI~st 141 (168)
T PF00158_consen 106 PP------------------------------------------ELQAKLLRVLEEGKFTRL--GSDKPVPVDVRIIAST 141 (168)
T ss_dssp -H------------------------------------------HHHHHHHHHHHHSEEECC--TSSSEEE--EEEEEEE
T ss_pred HH------------------------------------------HHHHHHHHHHhhchhccc--cccccccccceEEeec
Confidence 98 478899999999997544 4455777888889888
Q ss_pred CC
Q psy2640 214 NP 215 (613)
Q Consensus 214 NP 215 (613)
|-
T Consensus 142 ~~ 143 (168)
T PF00158_consen 142 SK 143 (168)
T ss_dssp SS
T ss_pred Cc
Confidence 83
No 59
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.06 E-value=0.14 Score=56.41 Aligned_cols=155 Identities=23% Similarity=0.307 Sum_probs=92.0
Q ss_pred eeecc-cCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEE
Q psy2640 116 ALVLA-DQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISI 194 (613)
Q Consensus 116 alvLa-d~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi 194 (613)
|+-.| ..||+||||+||+.....+ +++ -+.++ ..+++|+--||.-++++
T Consensus 243 ai~~ae~~GIVfiDEiDKIa~~~~~----------------~~~--------DvS~e------GVQ~~LLki~EG~~v~~ 292 (443)
T PRK05201 243 AIERVEQNGIVFIDEIDKIAARGGS----------------SGP--------DVSRE------GVQRDLLPLVEGSTVST 292 (443)
T ss_pred HHHHHHcCCEEEEEcchhhcccCCC----------------CCC--------CCCcc------chhcccccccccceeee
Confidence 45554 8999999999999872110 011 12222 47889999999999987
Q ss_pred ecccceeecCCcc-eeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCC
Q psy2640 195 AKASVVCSLPART-SVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNR 273 (613)
Q Consensus 195 ~kagi~~~l~ar~-svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~ 273 (613)
|.| +.++.. .++|+ |-|+..++ -+|-|-|.+||+++..|- ..+.+ --.+|+.-
T Consensus 293 -k~~---~i~T~~ILFI~~-----GAF~~~kp----~DlIPEl~GR~Pi~v~L~-~L~~~----dL~~ILte-------- 346 (443)
T PRK05201 293 -KYG---MVKTDHILFIAS-----GAFHVSKP----SDLIPELQGRFPIRVELD-ALTEE----DFVRILTE-------- 346 (443)
T ss_pred -cce---eEECCceeEEec-----CCcCCCCh----hhccHHHhCccceEEECC-CCCHH----HHHHHhcC--------
Confidence 444 233333 33332 44443332 246688999999877763 22221 11122210
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHh-hhcCCCcCChHHHHHHHHHHHHHHhccCC
Q psy2640 274 NPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYAR-KYVSKPELSTEAALLLQEFYLNLRKHHHS 352 (613)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar-~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~ 352 (613)
-...+++.|.++-+ ..+ .=.++++|.+.|.+.-.++....
T Consensus 347 ------------------------------------P~nsLikQy~~Lf~~egv-~L~Ftd~Al~~IA~~A~~~N~~~-- 387 (443)
T PRK05201 347 ------------------------------------PKASLIKQYQALLATEGV-TLEFTDDAIRRIAEIAYQVNEKT-- 387 (443)
T ss_pred ------------------------------------ChhHHHHHHHHHHhhcCc-EEEEcHHHHHHHHHHHHHhcccc--
Confidence 01267899987544 444 45788999999888777653221
Q ss_pred CCCcccchHHHHHHHH
Q psy2640 353 VDATPVTTRQLESLVR 368 (613)
Q Consensus 353 ~~~~~iT~R~LEsliR 368 (613)
-.+-+|-|.+++.
T Consensus 388 ---~~iGAR~LrtI~E 400 (443)
T PRK05201 388 ---ENIGARRLHTVME 400 (443)
T ss_pred ---cccchhhHHHHHH
Confidence 1256677777753
No 60
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.55 E-value=0.27 Score=55.99 Aligned_cols=108 Identities=22% Similarity=0.272 Sum_probs=68.4
Q ss_pred ccCCchhhhhHHHHhhhhh-cce--EEE--ecccccccCceEEE---EeeC-CCCeeecCceeecccCceeccccccCCC
Q psy2640 64 LSNEPQHTINCLGLAMHHY-IIS--VYV--CGNTSTTSGLTVTL---SREG-GGDFALEAGALVLADQGVCCIDEFDKMS 134 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~-~r~--~~~--~g~~~s~~gLta~~---~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~ 134 (613)
+.|.|+.++..+.-++|.. +|. -|+ ....-+..-+..-+ .+.. +|...-.+|.+..|+||+++|||++.++
T Consensus 224 i~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~ 303 (534)
T TIGR01817 224 LRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEIS 303 (534)
T ss_pred EECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCC
Confidence 6788999999999988864 321 122 11111111010000 0111 2222234677889999999999999999
Q ss_pred cccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccC
Q psy2640 135 AQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAAN 214 (613)
Q Consensus 135 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaN 214 (613)
. ..+..|...++.+.+.-. |-....+..+-+++++|
T Consensus 304 ~------------------------------------------~~Q~~Ll~~l~~~~~~~~--~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 304 P------------------------------------------AFQAKLLRVLQEGEFERV--GGNRTLKVDVRLVAATN 339 (534)
T ss_pred H------------------------------------------HHHHHHHHHHhcCcEEEC--CCCceEeecEEEEEeCC
Confidence 8 478889999999887643 43445667777888877
Q ss_pred C
Q psy2640 215 P 215 (613)
Q Consensus 215 P 215 (613)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 5
No 61
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.40 E-value=0.28 Score=52.83 Aligned_cols=35 Identities=26% Similarity=0.216 Sum_probs=30.4
Q ss_pred HHHHHHhhcccccccccChhHHHHHHH-Hhhhcchh
Q psy2640 563 LYQLMSARAKCELREEASKQDAQDVID-IMKWSLID 597 (613)
Q Consensus 563 LiRLseArAkl~lre~vt~~Da~~vv~-im~~s~~~ 597 (613)
|+|.++|+|-|+-|+.|+.+|+..|+. ++.|.+.-
T Consensus 281 l~raArA~Aal~GR~~V~~dDv~~~a~~vL~HR~~~ 316 (337)
T TIGR02030 281 LNRAAKALAAFEGRTEVTVDDIRRVAVLALRHRLRK 316 (337)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999998877 45666643
No 62
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=93.29 E-value=0.075 Score=60.11 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=26.2
Q ss_pred HHHHHHhhcccccccccChhHHHHHHH
Q psy2640 563 LYQLMSARAKCELREEASKQDAQDVID 589 (613)
Q Consensus 563 LiRLseArAkl~lre~vt~~Da~~vv~ 589 (613)
++|+|.+.|.|+-++.++++|+.+|++
T Consensus 471 ilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 471 ILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 999999999999999999999999986
No 63
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.04 E-value=0.33 Score=49.24 Aligned_cols=129 Identities=22% Similarity=0.211 Sum_probs=70.8
Q ss_pred ccCCchhhhhHHHHhhhhhc--ceEEEecccccccCceEEEEeeCCCCeeecCceeecccCceeccccccCCCccccccc
Q psy2640 64 LSNEPQHTINCLGLAMHHYI--ISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGM 141 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~~--r~~~~~g~~~s~~gLta~~~~~~~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~ 141 (613)
+-|-|+.++-.|...+..-. .=.+++|......|=-+ +=..-+..+-|++|||+-.++.
T Consensus 55 f~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~-------------~il~~l~~~~ILFIDEIHRlnk------ 115 (233)
T PF05496_consen 55 FYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLA-------------AILTNLKEGDILFIDEIHRLNK------ 115 (233)
T ss_dssp EESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHH-------------HHHHT--TT-EEEECTCCC--H------
T ss_pred EECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHH-------------HHHHhcCCCcEEEEechhhccH------
Confidence 56888888877765443321 11344443222111000 0001245678999999999998
Q ss_pred chhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEE-ecccc-----eeecCCcceeecccCC
Q psy2640 142 LYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISI-AKASV-----VCSLPARTSVIAAANP 215 (613)
Q Consensus 142 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi-~kagi-----~~~l~ar~svlAaaNP 215 (613)
..+++|+-+||++++.+ ..+|. .-.| .+++++.|+.=
T Consensus 116 ------------------------------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l-~~FTligATTr 158 (233)
T PF05496_consen 116 ------------------------------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINL-PPFTLIGATTR 158 (233)
T ss_dssp ------------------------------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-----EEEEEESS
T ss_pred ------------------------------------HHHHHHHHHhccCeEEEEeccccccceeeccC-CCceEeeeecc
Confidence 58899999999999976 34442 1122 23566666542
Q ss_pred CCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHh
Q psy2640 216 VGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMAS 265 (613)
Q Consensus 216 ~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~ 265 (613)
. -.+++||.+||-+++-+- .-.+..++..|.+.
T Consensus 159 ~-------------g~ls~pLrdRFgi~~~l~----~Y~~~el~~Iv~r~ 191 (233)
T PF05496_consen 159 A-------------GLLSSPLRDRFGIVLRLE----FYSEEELAKIVKRS 191 (233)
T ss_dssp G-------------CCTSHCCCTTSSEEEE--------THHHHHHHHHHC
T ss_pred c-------------cccchhHHhhcceecchh----cCCHHHHHHHHHHH
Confidence 1 248999999998776552 22455677776654
No 64
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.97 E-value=0.38 Score=53.14 Aligned_cols=151 Identities=23% Similarity=0.323 Sum_probs=89.9
Q ss_pred ccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccc
Q psy2640 120 ADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASV 199 (613)
Q Consensus 120 ad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi 199 (613)
+..|++||||+||+..... .++|- +.++ ..+++|+--||.-++++ |.|.
T Consensus 246 e~~GIVfiDEiDKIa~~~~----------------~~~~D--------vS~e------GVQ~~LLkilEGt~v~~-k~~~ 294 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGE----------------SSGAD--------VSRE------GVQRDLLPIVEGSTVNT-KYGM 294 (441)
T ss_pred HcCCEEEEEchhhhcccCC----------------CCCCC--------CCcc------chhccccccccCceeee-ccee
Confidence 7899999999999987210 01111 2222 47889999999999987 5452
Q ss_pred eeecCCcc-eeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCC
Q psy2640 200 VCSLPART-SVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHS 278 (613)
Q Consensus 200 ~~~l~ar~-svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~ 278 (613)
.++.. .++|+ |-|+..++ -+|-|-|.+||+++..|-. .+.+ --.+|+.-
T Consensus 295 ---v~T~~ILFI~~-----GAF~~~kp----~DlIPEl~GR~Pi~v~L~~-L~~e----dL~rILte------------- 344 (441)
T TIGR00390 295 ---VKTDHILFIAA-----GAFQLAKP----SDLIPELQGRFPIRVELQA-LTTD----DFERILTE------------- 344 (441)
T ss_pred ---EECCceeEEec-----CCcCCCCh----hhccHHHhCccceEEECCC-CCHH----HHHHHhcC-------------
Confidence 23322 33332 33443222 2366779999998777632 2221 11122210
Q ss_pred CCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhh-hcCCCcCChHHHHHHHHHHHHHHhccCCCCCcc
Q psy2640 279 TQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARK-YVSKPELSTEAALLLQEFYLNLRKHHHSVDATP 357 (613)
Q Consensus 279 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~-~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~ 357 (613)
-...+++.|.++-+. .+ .=.++++|.+.|.+.-.++.... -.
T Consensus 345 -------------------------------P~nsLikQy~~Lf~~egv-~L~Ftd~Al~~IA~~A~~~N~~~-----~~ 387 (441)
T TIGR00390 345 -------------------------------PKNSLIKQYKALMKTEGV-NIEFSDEAIKRIAELAYNVNEKT-----EN 387 (441)
T ss_pred -------------------------------ChhHHHHHHHHHHhhcCc-EEEEeHHHHHHHHHHHHHhcccc-----cc
Confidence 012678889776654 33 44788999999988777654322 12
Q ss_pred cchHHHHHHHH
Q psy2640 358 VTTRQLESLVR 368 (613)
Q Consensus 358 iT~R~LEsliR 368 (613)
+-+|-|.+++.
T Consensus 388 iGAR~LrtilE 398 (441)
T TIGR00390 388 IGARRLHTVLE 398 (441)
T ss_pred cchhhHHHHHH
Confidence 56677777754
No 65
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=92.74 E-value=0.14 Score=54.82 Aligned_cols=107 Identities=20% Similarity=0.196 Sum_probs=71.9
Q ss_pred ccCCchhhhhHHHHhhhhh-cce--EEE---ecccccc---cCceEEEEeeC-CCCeeecCceeecccCceeccccccCC
Q psy2640 64 LSNEPQHTINCLGLAMHHY-IIS--VYV---CGNTSTT---SGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKM 133 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~-~r~--~~~---~g~~~s~---~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm 133 (613)
+.|.|+.++..+.-++|.. +|. -|+ |+.-+.. .-|.+. .+.. +|.-.-.+|.+-.|++|++++||++.|
T Consensus 27 I~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~-~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L 105 (329)
T TIGR02974 27 IIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH-EAGAFTGAQKRHQGRFERADGGTLFLDELATA 105 (329)
T ss_pred EECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc-ccccccCcccccCCchhhCCCCEEEeCChHhC
Confidence 6788899999998888853 332 122 2211110 001100 1111 333334678899999999999999999
Q ss_pred CcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeeccc
Q psy2640 134 SAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAA 213 (613)
Q Consensus 134 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaa 213 (613)
+. ..+..|+..++.+.+.- -|.....+..+-+++++
T Consensus 106 ~~------------------------------------------~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiI~at 141 (329)
T TIGR02974 106 SL------------------------------------------LVQEKLLRVIEYGEFER--VGGSQTLQVDVRLVCAT 141 (329)
T ss_pred CH------------------------------------------HHHHHHHHHHHcCcEEe--cCCCceeccceEEEEec
Confidence 98 47888999999998653 46566778888899998
Q ss_pred CC
Q psy2640 214 NP 215 (613)
Q Consensus 214 NP 215 (613)
|+
T Consensus 142 ~~ 143 (329)
T TIGR02974 142 NA 143 (329)
T ss_pred hh
Confidence 86
No 66
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=91.95 E-value=0.22 Score=56.09 Aligned_cols=155 Identities=17% Similarity=0.215 Sum_probs=92.2
Q ss_pred chHHHHHHHHHHhhCccccchHHhhhccchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhhhh-hcce--EE
Q psy2640 11 TDTKIKSCLDFIERHNHLYNVAEIEERRCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHH-YIIS--VY 87 (613)
Q Consensus 11 ~~~~i~~~e~~~~~~~~lYd~~~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~~~-~~r~--~~ 87 (613)
....+.+.+. ..+..+.|..+.|-.+.--+..+++.+.. +-++.-++ -+.|.-++++-++.-++|. +||. =|
T Consensus 225 l~~~~~~~~~-~~~~~a~y~f~~Iig~S~~m~~~~~~akr--~A~tdstV--Li~GESGTGKElfA~~IH~~S~R~~~PF 299 (560)
T COG3829 225 LTRELEESEG-LLRLKAKYTFDDIIGESPAMLRVLELAKR--IAKTDSTV--LILGESGTGKELFARAIHNLSPRANGPF 299 (560)
T ss_pred HHHHHHHHhh-hhccccccchhhhccCCHHHHHHHHHHHh--hcCCCCcE--EEecCCCccHHHHHHHHHhcCcccCCCe
Confidence 3445555555 44567778888876655555555543321 11111111 1456666777777777775 3453 11
Q ss_pred Eecccccc------cCceEEEEeeC-CCCe-eecCceeecccCceeccccccCCCcccccccchhccccccccccccccc
Q psy2640 88 VCGNTSTT------SGLTVTLSREG-GGDF-ALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPA 159 (613)
Q Consensus 88 ~~g~~~s~------~gLta~~~~~~-~g~~-~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~ 159 (613)
++=|++.= +-|.++. +-. ||-- .=.+|-+-+|+||.+++||+..|+.
T Consensus 300 IaiNCaAiPe~LlESELFGye-~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl------------------------ 354 (560)
T COG3829 300 IAINCAAIPETLLESELFGYE-KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPL------------------------ 354 (560)
T ss_pred EEEecccCCHHHHHHHHhCcC-CccccccccCCCCcceeeccCCeEEehhhccCCH------------------------
Confidence 11111100 0011110 000 2211 1267888999999999999999998
Q ss_pred ccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCC
Q psy2640 160 FITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANP 215 (613)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP 215 (613)
.-+.-|+-+++..+|- .-|-....|...=|+||+|=
T Consensus 355 ------------------~LQaKLLRVLQEkei~--rvG~t~~~~vDVRIIAATN~ 390 (560)
T COG3829 355 ------------------PLQAKLLRVLQEKEIE--RVGGTKPIPVDVRIIAATNR 390 (560)
T ss_pred ------------------HHHHHHHHHHhhceEE--ecCCCCceeeEEEEEeccCc
Confidence 3577788888888853 44778889999999999993
No 67
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=91.69 E-value=1.3 Score=51.64 Aligned_cols=97 Identities=22% Similarity=0.239 Sum_probs=61.4
Q ss_pred eeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcC
Q psy2640 110 FALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQ 189 (613)
Q Consensus 110 ~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameq 189 (613)
..+..|.+-.+++|++++||++.|+. ..+..|+..|++
T Consensus 254 ~~~~~g~v~~asgGvL~LDEi~~Ld~------------------------------------------~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 254 PEPKTGLVTDAHGGVLFIDEIGELDP------------------------------------------LLQNKLLKVLED 291 (615)
T ss_pred CchhcCchhhcCCCeEEEeccccCCH------------------------------------------HHHHHHHHHHhh
Confidence 34556777788999999999999988 478899999999
Q ss_pred CeEEEecccc---------------eeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhh
Q psy2640 190 QSISIAKASV---------------VCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHL 254 (613)
Q Consensus 190 q~isi~kagi---------------~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~ 254 (613)
+.+.+...-. ....++.+.++++.+.. + -.++++|.|||..+. +...+.++
T Consensus 292 ~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~-----~-------~~l~~aLrSR~~~i~--~~pls~ed 357 (615)
T TIGR02903 292 KRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRD-----P-------EEINPALRSRCAEVF--FEPLTPED 357 (615)
T ss_pred CeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccc-----c-------cccCHHHHhceeEEE--eCCCCHHH
Confidence 9987753211 11134445555444321 0 035688999997553 23344444
Q ss_pred hHHHHHHH
Q psy2640 255 DTLLSEHV 262 (613)
Q Consensus 255 d~~la~~I 262 (613)
=..+..+.
T Consensus 358 i~~Il~~~ 365 (615)
T TIGR02903 358 IALIVLNA 365 (615)
T ss_pred HHHHHHHH
Confidence 34444443
No 68
>PRK09862 putative ATP-dependent protease; Provisional
Probab=91.07 E-value=0.4 Score=54.30 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=27.6
Q ss_pred HHHHHHhhcccccccccChhHHHHHHHHh
Q psy2640 563 LYQLMSARAKCELREEASKQDAQDVIDIM 591 (613)
Q Consensus 563 LiRLseArAkl~lre~vt~~Da~~vv~im 591 (613)
|+|++.+.|-|+-|+.|+.+|+.+|++.-
T Consensus 464 lLrvARTiADL~g~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 464 LLKVARTIADIDQSDIITRQHLQEAVSYR 492 (506)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999864
No 69
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=89.52 E-value=0.46 Score=50.81 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=77.6
Q ss_pred ccCCchhhhhHHHHhhhhh-cce--EEEeccccc--ccCceEEE---EeeC-CCCeeecCceeecccCceeccccccCCC
Q psy2640 64 LSNEPQHTINCLGLAMHHY-IIS--VYVCGNTST--TSGLTVTL---SREG-GGDFALEAGALVLADQGVCCIDEFDKMS 134 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~-~r~--~~~~g~~~s--~~gLta~~---~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~ 134 (613)
+.|.|+.++..+.-++|.. +|+ -|+.=++++ ..-+...+ .+.. +|.-.-.+|.+..|+||+++|||++.++
T Consensus 34 I~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~ 113 (326)
T PRK11608 34 IIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP 113 (326)
T ss_pred EECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCC
Confidence 5788888898888888853 322 122111111 11000000 0111 2222234778899999999999999999
Q ss_pred cccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccC
Q psy2640 135 AQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAAN 214 (613)
Q Consensus 135 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaN 214 (613)
. ..+..|...++.+.+.- .|-....+..+-+++++|
T Consensus 114 ~------------------------------------------~~Q~~L~~~l~~~~~~~--~g~~~~~~~~~RiI~~s~ 149 (326)
T PRK11608 114 M------------------------------------------LVQEKLLRVIEYGELER--VGGSQPLQVNVRLVCATN 149 (326)
T ss_pred H------------------------------------------HHHHHHHHHHhcCcEEe--CCCCceeeccEEEEEeCc
Confidence 8 47888999999988653 355567788888999888
Q ss_pred CCCCCCCCCccchhhcccccccccccc
Q psy2640 215 PVGGHYNRAKTVAENLRMGQALLSRFD 241 (613)
Q Consensus 215 P~~g~~~~~~~~~e~i~l~~~llsRFD 241 (613)
..- ....+.-.+.+.|+.||.
T Consensus 150 ~~l------~~l~~~g~f~~dL~~~l~ 170 (326)
T PRK11608 150 ADL------PAMVAEGKFRADLLDRLA 170 (326)
T ss_pred hhH------HHHHHcCCchHHHHHhcC
Confidence 631 011222334555666664
No 70
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.43 E-value=1.8 Score=52.23 Aligned_cols=95 Identities=13% Similarity=0.136 Sum_probs=61.0
Q ss_pred cCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccce
Q psy2640 121 DQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVV 200 (613)
Q Consensus 121 d~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~ 200 (613)
..+|+++||++|+++ ..+..|++.|+++.++-+ .|-.
T Consensus 668 p~svvllDEieka~~------------------------------------------~v~~~Llq~ld~g~l~d~-~Gr~ 704 (852)
T TIGR03345 668 PYSVVLLDEVEKAHP------------------------------------------DVLELFYQVFDKGVMEDG-EGRE 704 (852)
T ss_pred CCcEEEEechhhcCH------------------------------------------HHHHHHHHHhhcceeecC-CCcE
Confidence 457899999999988 478899999999999865 4656
Q ss_pred eecCCcceeecccCCCCCCCC---------CC-ccchhh------ccccccccccccEEEEecCCCChhhhHHHHHH
Q psy2640 201 CSLPARTSVIAAANPVGGHYN---------RA-KTVAEN------LRMGQALLSRFDLVFILLDNPDEHLDTLLSEH 261 (613)
Q Consensus 201 ~~l~ar~svlAaaNP~~g~~~---------~~-~~~~e~------i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~ 261 (613)
..+. +|.|+.++|=-...+. +. ..+.+. -.++|.+++|+| ++ ....-+++.-..|...
T Consensus 705 vd~~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI-~F~pLs~e~l~~Iv~~ 778 (852)
T TIGR03345 705 IDFK-NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VI-PYLPLDDDVLAAIVRL 778 (852)
T ss_pred Eecc-ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EE-EeCCCCHHHHHHHHHH
Confidence 6665 6888888884322111 00 011111 237888999998 33 3445555444444433
No 71
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=88.97 E-value=0.46 Score=53.09 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=55.2
Q ss_pred CCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhh
Q psy2640 107 GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEA 186 (613)
Q Consensus 107 ~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ea 186 (613)
||.-.-..|.+..||||++++||+..|+. ..+.-|+-+
T Consensus 221 TGA~~~r~G~fE~A~GGTLfLDEI~~mpl------------------------------------------~~Q~kLLRv 258 (464)
T COG2204 221 TGAITRRIGRFEQANGGTLFLDEIGEMPL------------------------------------------ELQVKLLRV 258 (464)
T ss_pred CCcccccCcceeEcCCceEEeeccccCCH------------------------------------------HHHHHHHHH
Confidence 44445567788999999999999999998 478889999
Q ss_pred hcCCeEEEecccceeecCCcceeecccCC
Q psy2640 187 MEQQSISIAKASVVCSLPARTSVIAAANP 215 (613)
Q Consensus 187 meqq~isi~kagi~~~l~ar~svlAaaNP 215 (613)
++++++.- -|-..+.+...=||||+|-
T Consensus 259 Lqe~~~~r--vG~~~~i~vdvRiIaaT~~ 285 (464)
T COG2204 259 LQEREFER--VGGNKPIKVDVRIIAATNR 285 (464)
T ss_pred HHcCeeEe--cCCCcccceeeEEEeecCc
Confidence 99999654 4888889999999999994
No 72
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=88.65 E-value=0.4 Score=53.51 Aligned_cols=105 Identities=23% Similarity=0.285 Sum_probs=74.4
Q ss_pred ccCCchhhhhHHHHhhhh-hcce----EEEecccccc------cCceEEEEeeC-CCCeeecCceeecccCceecccccc
Q psy2640 64 LSNEPQHTINCLGLAMHH-YIIS----VYVCGNTSTT------SGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFD 131 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~-~~r~----~~~~g~~~s~------~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfd 131 (613)
+.|.-+.++-+..-|+|+ +||. |++ |++.= +-|.+. .|.- ||-+.-++|-.-|||||.+++||+.
T Consensus 251 i~GETGtGKElvAraIH~~S~R~~kPfV~~--NCAAlPesLlESELFGH-eKGAFTGA~~~r~GrFElAdGGTLFLDEIG 327 (550)
T COG3604 251 IRGETGTGKELVARAIHQLSPRRDKPFVKL--NCAALPESLLESELFGH-EKGAFTGAINTRRGRFELADGGTLFLDEIG 327 (550)
T ss_pred EecCCCccHHHHHHHHHhhCcccCCCceee--eccccchHHHHHHHhcc-cccccccchhccCcceeecCCCeEechhhc
Confidence 566666667777777775 3443 222 11110 012211 2223 7888889999999999999999999
Q ss_pred CCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeec
Q psy2640 132 KMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIA 211 (613)
Q Consensus 132 km~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlA 211 (613)
.|+. .-+.-|+-++..|.|- .-|-..+++.-.=|||
T Consensus 328 elPL------------------------------------------~lQaKLLRvLQegEie--RvG~~r~ikVDVRiIA 363 (550)
T COG3604 328 ELPL------------------------------------------ALQAKLLRVLQEGEIE--RVGGDRTIKVDVRVIA 363 (550)
T ss_pred cCCH------------------------------------------HHHHHHHHHHhhccee--ecCCCceeEEEEEEEe
Confidence 9998 3577888999888854 4588888999999999
Q ss_pred ccCC
Q psy2640 212 AANP 215 (613)
Q Consensus 212 aaNP 215 (613)
|+|=
T Consensus 364 ATNR 367 (550)
T COG3604 364 ATNR 367 (550)
T ss_pred ccch
Confidence 9993
No 73
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=88.35 E-value=0.58 Score=53.46 Aligned_cols=60 Identities=23% Similarity=0.342 Sum_probs=50.0
Q ss_pred ecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCe
Q psy2640 112 LEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQS 191 (613)
Q Consensus 112 le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~ 191 (613)
-.+|.+-.|+||++++||++.|+. ..+..|+.++++++
T Consensus 313 ~~~Gl~e~A~gGTLfLdeI~~Lp~------------------------------------------~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 313 GRAGLFEIAHGGTLFLDEIGEMPL------------------------------------------PLQTRLLRVLEEKE 350 (538)
T ss_pred ccCCchhccCCCEEEEcChHhCCH------------------------------------------HHHHHHHhhhhcCe
Confidence 346788899999999999999998 47889999999998
Q ss_pred EEEecccceeecCCcceeecccCC
Q psy2640 192 ISIAKASVVCSLPARTSVIAAANP 215 (613)
Q Consensus 192 isi~kagi~~~l~ar~svlAaaNP 215 (613)
+.- -|-....+..+-+++++|.
T Consensus 351 ~~r--~G~~~~~~~dvRiIaat~~ 372 (538)
T PRK15424 351 VTR--VGGHQPVPVDVRVISATHC 372 (538)
T ss_pred EEe--cCCCceeccceEEEEecCC
Confidence 763 3666677888888998875
No 74
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=87.68 E-value=0.31 Score=55.27 Aligned_cols=189 Identities=17% Similarity=0.202 Sum_probs=100.3
Q ss_pred cccCceEEEEeeC-CCCe-----eecCceeecccCceeccccccCCCcccccccchhccccccccccccccccccccccc
Q psy2640 94 TTSGLTVTLSREG-GGDF-----ALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHP 167 (613)
Q Consensus 94 s~~gLta~~~~~~-~g~~-----~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 167 (613)
|-..|.+.+.+.. .|.+ .++||+|--|+||++.||--+-+..+
T Consensus 299 t~~nLfG~Ie~~~~~G~~~td~~~I~~GaLhkANGGyLIL~a~~LL~~p------------------------------- 347 (509)
T PF13654_consen 299 TYSNLFGRIEYESEMGTLVTDFTLIKPGALHKANGGYLILDAEDLLANP------------------------------- 347 (509)
T ss_dssp -HHHHH-EE-----------GGGGEE--HHHHTTTSEEEETTGGGS-HH-------------------------------
T ss_pred CHHHCcEEEEEECCCCCEecCcceEcCceEEecCCeEEEEEHHHhhhCh-------------------------------
Confidence 3344778887776 4533 47999999999999999988877762
Q ss_pred ccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccc-cccccccccEEEEe
Q psy2640 168 VMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRM-GQALLSRFDLVFIL 246 (613)
Q Consensus 168 ~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l-~~~llsRFDLi~~l 246 (613)
..|..|..++..+++.+.-.+- ..+. ....+ |+|+ .+|+=.+|
T Consensus 348 ----------~~W~~LKr~L~~~~i~ie~~~~-~~~~-----------------------~~~~l~PepI--pl~vKVIL 391 (509)
T PF13654_consen 348 ----------YAWERLKRALRTGEIEIESPEE-YGLS-----------------------STVSLEPEPI--PLDVKVIL 391 (509)
T ss_dssp ----------H-HHHHHHHHHHSEE--B-S----TTS-----------------------GGGG-B-S-E--E---EEEE
T ss_pred ----------HHHHHHHHHHHcCceeeccccc-cccC-----------------------CCCCCCCCCc--ceEEEEEE
Confidence 3699999999999999974321 0000 01111 1222 24555555
Q ss_pred cCCCCh-----hhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHH
Q psy2640 247 LDNPDE-----HLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAY 321 (613)
Q Consensus 247 ~d~~~~-----~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ 321 (613)
+.++.. ..|....+.. +.... + +..-..+.+-++.|+.|
T Consensus 392 iG~~~~y~~L~~~D~dF~~lF-kv~ae--------------------------f---------~~~~~~~~e~~~~~~~~ 435 (509)
T PF13654_consen 392 IGDRELYYLLYEYDPDFYKLF-KVKAE--------------------------F---------DSEMPRTEENIRQYARF 435 (509)
T ss_dssp EE-TTHHHHS-HHHHHHHHHH-SEEEE-------------------------------------SEEE--HHHHHHHHHH
T ss_pred EcCHHHHHHHHHhCHHHHhCC-CEEEE--------------------------c---------cccCCCCHHHHHHHHHH
Confidence 555443 2333333221 11100 0 01112455777888777
Q ss_pred Hhhhc---CCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCcc
Q psy2640 322 ARKYV---SKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSI 391 (613)
Q Consensus 322 ar~~~---~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I 391 (613)
.+..| .-|-++.+|...|.++...+ + .+.+++....+..|++-|... |+.+..+.|+..|+...
T Consensus 436 i~~~~~~~~L~~~~~~Av~~li~~~~R~---~--q~kLsl~~~~l~~ll~EA~~~-A~~~~~~~I~~~~V~~A 502 (509)
T PF13654_consen 436 IASICQKEGLPPFDRSAVARLIEYSARL---D--QDKLSLRFSWLADLLREANYW-ARKEGAKVITAEHVEQA 502 (509)
T ss_dssp HHHHHHHHSS--BBHHHHHHHHHHHHHC---C---SEEE--HHHHHHHHHHHHHH-HHHCT-SSB-HHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHH---h--CCEeCCCHHHHHHHHHHHHHH-HHHhCCCccCHHHHHHH
Confidence 65433 13789999999999988876 1 235777778999999999888 98888888888776443
No 75
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=87.56 E-value=0.6 Score=41.57 Aligned_cols=69 Identities=29% Similarity=0.300 Sum_probs=49.5
Q ss_pred ecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecc
Q psy2640 118 VLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKA 197 (613)
Q Consensus 118 vLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~ka 197 (613)
...+.+++++||++.+.. .....+.+.|++.....
T Consensus 81 ~~~~~~~lilDe~~~~~~------------------------------------------~~~~~~~~~i~~~~~~~--- 115 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSR------------------------------------------GAQNALLRVLETLNDLR--- 115 (151)
T ss_pred ccCCCeEEEEeChhhhhH------------------------------------------HHHHHHHHHHHhcCcee---
Confidence 456779999999999955 24556777777765543
Q ss_pred cceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEe
Q psy2640 198 SVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFIL 246 (613)
Q Consensus 198 gi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l 246 (613)
..+.++.+++++||... ..+++.+.+|||..+.+
T Consensus 116 ----~~~~~~~ii~~~~~~~~-----------~~~~~~~~~r~~~~i~~ 149 (151)
T cd00009 116 ----IDRENVRVIGATNRPLL-----------GDLDRALYDRLDIRIVI 149 (151)
T ss_pred ----ccCCCeEEEEecCcccc-----------CCcChhHHhhhccEeec
Confidence 45678899999998632 45677889999865543
No 76
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=86.92 E-value=4 Score=44.25 Aligned_cols=40 Identities=25% Similarity=0.241 Sum_probs=32.8
Q ss_pred HHHHHHhhcccccccccChhHHHHHHH-HhhhcchhhhcCC
Q psy2640 563 LYQLMSARAKCELREEASKQDAQDVID-IMKWSLIDTSLNG 602 (613)
Q Consensus 563 LiRLseArAkl~lre~vt~~Da~~vv~-im~~s~~~~~~de 602 (613)
|+|.++|+|=|+=|+.|+.+|+..|+. ++.|.+.-...|+
T Consensus 294 l~raArA~Aal~GR~~V~pdDv~~~a~~vL~HR~~~~p~~~ 334 (350)
T CHL00081 294 TNRAAKALAAFEGRTEVTPKDIFKVITLCLRHRLRKDPLES 334 (350)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCcCCcccc
Confidence 999999999999999999999998875 5677775444333
No 77
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=86.87 E-value=0.77 Score=54.88 Aligned_cols=166 Identities=18% Similarity=0.207 Sum_probs=85.1
Q ss_pred hccchhhhHHHHhhhhhc----ccchhhhhhhccCCchhhhhHHHHhhhhh--cceEEEecccccc-cCceEEEEeeCCC
Q psy2640 36 ERRCYLVDIKVLMNDQIF----NDQWKTFLQNLSNEPQHTINCLGLAMHHY--IISVYVCGNTSTT-SGLTVTLSREGGG 108 (613)
Q Consensus 36 ~~~~~~~dvK~~i~~qlf----gg~~k~~~~~l~~~p~~~~~~l~la~~~~--~r~~~~~g~~~s~-~gLta~~~~~~~g 108 (613)
...+++.++|+.+..-+- .+..+.-.=-|.|-|+.++..+..++... ...+.++..+... .-+... ..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~-----~~ 394 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH-----RR 394 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC-----CC
Confidence 457788888887764322 11111101126889999997777654432 2222222211110 001000 00
Q ss_pred Cee-ecCcee------ecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHH
Q psy2640 109 DFA-LEAGAL------VLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQ 181 (613)
Q Consensus 109 ~~~-le~Gal------vLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (613)
.|. --+|.+ .-..+.|++|||+|||..... + +-.+
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~-----------------~---------------------~~~~ 436 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFR-----------------G---------------------DPAS 436 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccC-----------------C---------------------CHHH
Confidence 111 012222 123456999999999986110 0 1246
Q ss_pred HHHhhhcCC---eEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHH
Q psy2640 182 ALLEAMEQQ---SISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLL 258 (613)
Q Consensus 182 al~eameqq---~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~l 258 (613)
+|++.|+.. ...=..-+....+ .++.+++++|+.. .++++|++||+.| -+..++.+.-..|
T Consensus 437 aLl~~ld~~~~~~f~d~~~~~~~d~-s~v~~I~TtN~~~-------------~i~~~L~~R~~vi--~~~~~~~~e~~~I 500 (775)
T TIGR00763 437 ALLEVLDPEQNNAFSDHYLDVPFDL-SKVIFIATANSID-------------TIPRPLLDRMEVI--ELSGYTEEEKLEI 500 (775)
T ss_pred HHHHhcCHHhcCccccccCCceecc-CCEEEEEecCCch-------------hCCHHHhCCeeEE--ecCCCCHHHHHHH
Confidence 889988742 1111111222222 3677889999851 4789999999743 4566665555555
Q ss_pred HH
Q psy2640 259 SE 260 (613)
Q Consensus 259 a~ 260 (613)
+.
T Consensus 501 ~~ 502 (775)
T TIGR00763 501 AK 502 (775)
T ss_pred HH
Confidence 53
No 78
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=85.85 E-value=1.4 Score=52.44 Aligned_cols=100 Identities=12% Similarity=0.189 Sum_probs=65.5
Q ss_pred ccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccc
Q psy2640 120 ADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASV 199 (613)
Q Consensus 120 ad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi 199 (613)
...+|+++||++|+++ +.+..|++.|+++.++-. .|.
T Consensus 552 ~p~~VvllDEieka~~------------------------------------------~~~~~Ll~~ld~g~~~d~-~g~ 588 (731)
T TIGR02639 552 HPHCVLLLDEIEKAHP------------------------------------------DIYNILLQVMDYATLTDN-NGR 588 (731)
T ss_pred CCCeEEEEechhhcCH------------------------------------------HHHHHHHHhhccCeeecC-CCc
Confidence 4568999999999988 478899999999999754 454
Q ss_pred eeecCCcceeecccCCCCCC-------CCCCc---cchhh--ccccccccccccEEEEecCCCChhhhHHHHHHHHH
Q psy2640 200 VCSLPARTSVIAAANPVGGH-------YNRAK---TVAEN--LRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMA 264 (613)
Q Consensus 200 ~~~l~ar~svlAaaNP~~g~-------~~~~~---~~~e~--i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~ 264 (613)
...+. +|.+++++|.-... |.... .+.+. -.++|.++.|||-++.+ ..-+++.=..|.++.+.
T Consensus 589 ~vd~~-~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F-~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 589 KADFR-NVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHF-NPLSEEVLEKIVQKFVD 663 (731)
T ss_pred ccCCC-CCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEc-CCCCHHHHHHHHHHHHH
Confidence 44443 67888888863211 11100 01111 23788999999976665 44555555566665554
No 79
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=85.82 E-value=5.4 Score=48.31 Aligned_cols=81 Identities=16% Similarity=0.266 Sum_probs=53.6
Q ss_pred CceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEeccccee
Q psy2640 122 QGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVC 201 (613)
Q Consensus 122 ~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~ 201 (613)
..|+++||++|+++ ..+..|++.|+++.++-. .|...
T Consensus 668 ~~vlllDeieka~~------------------------------------------~v~~~Ll~~l~~g~l~d~-~g~~v 704 (852)
T TIGR03346 668 YSVVLFDEVEKAHP------------------------------------------DVFNVLLQVLDDGRLTDG-QGRTV 704 (852)
T ss_pred CcEEEEeccccCCH------------------------------------------HHHHHHHHHHhcCceecC-CCeEE
Confidence 35899999999988 478899999999999854 46555
Q ss_pred ecCCcceeecccCCCCCCCCC------Cccchh------hccccccccccccEEEEe
Q psy2640 202 SLPARTSVIAAANPVGGHYNR------AKTVAE------NLRMGQALLSRFDLVFIL 246 (613)
Q Consensus 202 ~l~ar~svlAaaNP~~g~~~~------~~~~~e------~i~l~~~llsRFDLi~~l 246 (613)
.+. +|.|++++|=-...... ...+.+ .-.+.|.|+.|+|-|++.
T Consensus 705 d~r-n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF 760 (852)
T TIGR03346 705 DFR-NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVF 760 (852)
T ss_pred ecC-CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEec
Confidence 553 58899999942111100 011111 123677788888865554
No 80
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=85.33 E-value=8.5 Score=39.24 Aligned_cols=146 Identities=21% Similarity=0.289 Sum_probs=79.2
Q ss_pred ecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecc
Q psy2640 118 VLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKA 197 (613)
Q Consensus 118 vLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~ka 197 (613)
+.+.|--+|.|||+.++... . +..+..-.+++.|+..+.-++.-.
T Consensus 81 ~~~~GaW~cfdefnrl~~~v--------------L---------------------S~i~~~i~~i~~al~~~~~~~~~~ 125 (231)
T PF12774_consen 81 LAQSGAWLCFDEFNRLSEEV--------------L---------------------SVISQQIQSIQDALRAKQKSFTLE 125 (231)
T ss_dssp HHHHT-EEEEETCCCSSHHH--------------H---------------------HHHHHHHHHHHHHHHCTSSEEEET
T ss_pred HhhcCchhhhhhhhhhhHHH--------------H---------------------HHHHHHHHHHHHhhcccccccccC
Confidence 34457778999999999821 0 112234556677777766666667
Q ss_pred cceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCC
Q psy2640 198 SVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSH 277 (613)
Q Consensus 198 gi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~ 277 (613)
|....++-.|.+..+.||-+. ..-.+|+.|-.-|=-+- .-.|| -..|++..+..+ |.
T Consensus 126 g~~i~l~~~~~iFiT~np~y~---------gr~~LP~nLk~lFRpva--m~~PD---~~~I~ei~L~s~-GF-------- 182 (231)
T PF12774_consen 126 GQEIKLNPNCGIFITMNPGYA---------GRSELPENLKALFRPVA--MMVPD---LSLIAEILLLSQ-GF-------- 182 (231)
T ss_dssp TCEEE--TT-EEEEEE-B-CC---------CC--S-HHHCTTEEEEE----S-----HHHHHHHHHHCC-CT--------
T ss_pred CCEEEEccceeEEEeeccccC---------CcccCCHhHHHHhheeE--EeCCC---HHHHHHHHHHHc-Cc--------
Confidence 888899999999999999632 22346666665552211 12222 233444444322 00
Q ss_pred CCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcc
Q psy2640 278 STQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATP 357 (613)
Q Consensus 278 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~ 357 (613)
.-....++.|..+|..++..-.+....+
T Consensus 183 ----------------------------------------------------~~a~~La~kl~~l~~l~~~~lS~q~hyd 210 (231)
T PF12774_consen 183 ----------------------------------------------------KDAKSLAKKLVSLFQLCKEQLSKQDHYD 210 (231)
T ss_dssp ----------------------------------------------------SSHHHHHHHHHHHHHHHHHCS-SSTT--
T ss_pred ----------------------------------------------------hhHHHHHHHHHHHHHHHHHhhccCcccc
Confidence 1112234455666766666655667888
Q ss_pred cchHHHHHHHHHHHhh
Q psy2640 358 VTTRQLESLVRLTQDI 373 (613)
Q Consensus 358 iT~R~LEsliRLseA~ 373 (613)
+..|.+.+++++|-..
T Consensus 211 fgLRalk~vl~~a~~~ 226 (231)
T PF12774_consen 211 FGLRALKSVLRMAGSL 226 (231)
T ss_dssp -SHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999999999998655
No 81
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=84.90 E-value=1.7 Score=51.75 Aligned_cols=98 Identities=12% Similarity=0.177 Sum_probs=60.8
Q ss_pred cCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccce
Q psy2640 121 DQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVV 200 (613)
Q Consensus 121 d~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~ 200 (613)
..||+++||++|+++ ..+..|+..|+++.++-. .|-.
T Consensus 557 p~sVlllDEieka~~------------------------------------------~v~~~LLq~ld~G~ltd~-~g~~ 593 (758)
T PRK11034 557 PHAVLLLDEIEKAHP------------------------------------------DVFNLLLQVMDNGTLTDN-NGRK 593 (758)
T ss_pred CCcEEEeccHhhhhH------------------------------------------HHHHHHHHHHhcCeeecC-CCce
Confidence 568999999999988 478999999999999854 3433
Q ss_pred eecCCcceeecccCCCCC-------CCCCCc---cchh--hccccccccccccEEEEecCCCChhhhHHHHHHHH
Q psy2640 201 CSLPARTSVIAAANPVGG-------HYNRAK---TVAE--NLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVM 263 (613)
Q Consensus 201 ~~l~ar~svlAaaNP~~g-------~~~~~~---~~~e--~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il 263 (613)
..+ .+|.++.++|--.. .|.... .+.+ .-.++|.++.|+|-|+.. ..-+.+.-..|+...+
T Consensus 594 vd~-rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f-~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 594 ADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWF-DHLSTDVIHQVVDKFI 666 (758)
T ss_pred ecC-CCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEc-CCCCHHHHHHHHHHHH
Confidence 332 45778888882100 011000 0111 124889999999976554 3333333344444433
No 82
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=84.24 E-value=1.2 Score=49.39 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=52.4
Q ss_pred CCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhh
Q psy2640 107 GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEA 186 (613)
Q Consensus 107 ~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ea 186 (613)
+|.....+|.+..|++|+++|||++.++. ..+..|...
T Consensus 223 ~~~~~~~~g~~~~a~~gtl~ld~i~~l~~------------------------------------------~~q~~L~~~ 260 (457)
T PRK11361 223 TGAQTLRQGLFERANEGTLLLDEIGEMPL------------------------------------------VLQAKLLRI 260 (457)
T ss_pred CCCCCCCCCceEECCCCEEEEechhhCCH------------------------------------------HHHHHHHHH
Confidence 34445567889999999999999999998 468889999
Q ss_pred hcCCeEEEecccceeecCCcceeecccCC
Q psy2640 187 MEQQSISIAKASVVCSLPARTSVIAAANP 215 (613)
Q Consensus 187 meqq~isi~kagi~~~l~ar~svlAaaNP 215 (613)
++.+.+. +.|.....+..+-+++++|+
T Consensus 261 l~~~~~~--~~~~~~~~~~~~rii~~t~~ 287 (457)
T PRK11361 261 LQEREFE--RIGGHQTIKVDIRIIAATNR 287 (457)
T ss_pred HhcCcEE--eCCCCceeeeceEEEEeCCC
Confidence 9998865 34555677778888999885
No 83
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=83.99 E-value=1.4 Score=50.16 Aligned_cols=107 Identities=24% Similarity=0.254 Sum_probs=69.8
Q ss_pred ccCCchhhhhHHHHhhhhh-cce----EEEeccccccc----CceEEEEeeC-CCCeeecCceeecccCceeccccccCC
Q psy2640 64 LSNEPQHTINCLGLAMHHY-IIS----VYVCGNTSTTS----GLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKM 133 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~-~r~----~~~~g~~~s~~----gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm 133 (613)
+.|.|+.++..+.-++|.. +|. +.+....-+.. -|.+. .+.. +|...-.+|.+-.|+||+++|||++.|
T Consensus 215 I~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~-~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L 293 (509)
T PRK05022 215 ILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGH-VKGAFTGAISNRSGKFELADGGTLFLDEIGEL 293 (509)
T ss_pred EECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCc-cccccCCCcccCCcchhhcCCCEEEecChhhC
Confidence 6788999999998888864 332 22221111111 01110 0111 222223467788999999999999999
Q ss_pred CcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeeccc
Q psy2640 134 SAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAA 213 (613)
Q Consensus 134 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaa 213 (613)
+. ..+..|...++.+.+.- -|-..+.+..+-++|++
T Consensus 294 ~~------------------------------------------~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiI~~t 329 (509)
T PRK05022 294 PL------------------------------------------ALQAKLLRVLQYGEIQR--VGSDRSLRVDVRVIAAT 329 (509)
T ss_pred CH------------------------------------------HHHHHHHHHHhcCCEee--CCCCcceecceEEEEec
Confidence 98 46788999999988643 35456777888899998
Q ss_pred CC
Q psy2640 214 NP 215 (613)
Q Consensus 214 NP 215 (613)
|.
T Consensus 330 ~~ 331 (509)
T PRK05022 330 NR 331 (509)
T ss_pred CC
Confidence 85
No 84
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=83.98 E-value=1.2 Score=51.92 Aligned_cols=59 Identities=20% Similarity=0.301 Sum_probs=48.1
Q ss_pred cCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeE
Q psy2640 113 EAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSI 192 (613)
Q Consensus 113 e~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~i 192 (613)
.+|.+..|+||+++|||++.|+. ..+..|...++.+.+
T Consensus 408 ~~g~~~~a~~GtL~ldei~~l~~------------------------------------------~~Q~~Ll~~l~~~~~ 445 (638)
T PRK11388 408 RLSKFELAHGGTLFLEKVEYLSP------------------------------------------ELQSALLQVLKTGVI 445 (638)
T ss_pred CCCceeECCCCEEEEcChhhCCH------------------------------------------HHHHHHHHHHhcCcE
Confidence 46778899999999999999998 478889999999887
Q ss_pred EEecccceeecCCcceeecccCC
Q psy2640 193 SIAKASVVCSLPARTSVIAAANP 215 (613)
Q Consensus 193 si~kagi~~~l~ar~svlAaaNP 215 (613)
+- .|-....+..+-+++++|.
T Consensus 446 ~~--~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 446 TR--LDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred Ee--CCCCceEEeeEEEEEeccC
Confidence 53 3545566778889998885
No 85
>KOG0745|consensus
Probab=81.61 E-value=1.4 Score=48.55 Aligned_cols=67 Identities=30% Similarity=0.403 Sum_probs=48.5
Q ss_pred eecccCceeccccccCCCcccccccchhccccccccccccccccccccc---ccccccccccchHHHHHHHhhhcCCeEE
Q psy2640 117 LVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSI---HPVMGEKRHTMSAQHQALLEAMEQQSIS 193 (613)
Q Consensus 117 lvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~al~eameqq~is 193 (613)
+--|-+||++|||+|||... +-+| +-|.|| ..+++|+--+|.-.|.
T Consensus 287 VekAQqGIVflDEvDKi~~~-------------------------~~~i~~~RDVsGE------GVQQaLLKllEGtvVn 335 (564)
T KOG0745|consen 287 VEKAQQGIVFLDEVDKITKK-------------------------AESIHTSRDVSGE------GVQQALLKLLEGTVVN 335 (564)
T ss_pred HHHHhcCeEEEehhhhhccc-------------------------Cccccccccccch------hHHHHHHHHhcccEEc
Confidence 35688999999999999851 1222 245666 6899999999999999
Q ss_pred EecccceeecCCcceeecccC
Q psy2640 194 IAKASVVCSLPARTSVIAAAN 214 (613)
Q Consensus 194 i~kagi~~~l~ar~svlAaaN 214 (613)
|++.|.....+.....+-+.|
T Consensus 336 VpeK~~~~~~rgd~vqiDTtn 356 (564)
T KOG0745|consen 336 VPEKGSRRKPRGDTVQIDTTN 356 (564)
T ss_pred ccCCCCCCCCCCCeEEEeccc
Confidence 988886555555555555544
No 86
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=81.49 E-value=1.7 Score=49.60 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=68.3
Q ss_pred ccCCchhhhhHHHHhhhhh-cce--EEEecccccc--cCceEEEEeeCCCCee-----ecCceeecccCceeccccccCC
Q psy2640 64 LSNEPQHTINCLGLAMHHY-IIS--VYVCGNTSTT--SGLTVTLSREGGGDFA-----LEAGALVLADQGVCCIDEFDKM 133 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~-~r~--~~~~g~~~s~--~gLta~~~~~~~g~~~-----le~GalvLad~gv~ciDEfdkm 133 (613)
+.|.|+.++..+.-++|.. +|. -|+.=++++- .-|-..+--...|.|+ -.+|-+-.|++|.+++||++.|
T Consensus 240 I~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L 319 (526)
T TIGR02329 240 ILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEM 319 (526)
T ss_pred EECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhC
Confidence 6788888888888888853 332 1221111110 0000000000012221 3467778899999999999999
Q ss_pred CcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeeccc
Q psy2640 134 SAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAA 213 (613)
Q Consensus 134 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaa 213 (613)
+. ..+..|...++++.+.- -|-....+..+-+++++
T Consensus 320 p~------------------------------------------~~Q~~Ll~~L~~~~~~r--~g~~~~~~~dvRiIaat 355 (526)
T TIGR02329 320 PL------------------------------------------PLQTRLLRVLEEREVVR--VGGTEPVPVDVRVVAAT 355 (526)
T ss_pred CH------------------------------------------HHHHHHHHHHhcCcEEe--cCCCceeeecceEEecc
Confidence 98 47888999999988653 35555677778888888
Q ss_pred CC
Q psy2640 214 NP 215 (613)
Q Consensus 214 NP 215 (613)
|.
T Consensus 356 ~~ 357 (526)
T TIGR02329 356 HC 357 (526)
T ss_pred CC
Confidence 74
No 87
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=80.01 E-value=2.2 Score=46.92 Aligned_cols=59 Identities=24% Similarity=0.366 Sum_probs=47.2
Q ss_pred cCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeE
Q psy2640 113 EAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSI 192 (613)
Q Consensus 113 e~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~i 192 (613)
.+|.+..|+||+++|||++.|+. ..+..|+..++.+.+
T Consensus 225 ~~g~~~~a~~gtl~ldei~~l~~------------------------------------------~~q~~l~~~l~~~~~ 262 (441)
T PRK10365 225 REGRFVEADGGTLFLDEIGDISP------------------------------------------MMQVRLLRAIQEREV 262 (441)
T ss_pred CCCceeECCCCEEEEeccccCCH------------------------------------------HHHHHHHHHHccCcE
Confidence 57888999999999999999998 478889999999996
Q ss_pred EEecccceeecCCcceeecccCC
Q psy2640 193 SIAKASVVCSLPARTSVIAAANP 215 (613)
Q Consensus 193 si~kagi~~~l~ar~svlAaaNP 215 (613)
+-. |-..+.+..+-++++++.
T Consensus 263 ~~~--~~~~~~~~~~rii~~t~~ 283 (441)
T PRK10365 263 QRV--GSNQTISVDVRLIAATHR 283 (441)
T ss_pred EeC--CCCceeeeceEEEEeCCC
Confidence 543 444556667777777764
No 88
>CHL00095 clpC Clp protease ATP binding subunit
Probab=78.64 E-value=5.3 Score=48.20 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=63.5
Q ss_pred CceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEeccccee
Q psy2640 122 QGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVC 201 (613)
Q Consensus 122 ~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~ 201 (613)
..|+++||++|+++ ..+.+|++.||++.++-.+ |-..
T Consensus 612 ~~VvllDeieka~~------------------------------------------~v~~~Llq~le~g~~~d~~-g~~v 648 (821)
T CHL00095 612 YTVVLFDEIEKAHP------------------------------------------DIFNLLLQILDDGRLTDSK-GRTI 648 (821)
T ss_pred CeEEEECChhhCCH------------------------------------------HHHHHHHHHhccCceecCC-CcEE
Confidence 47899999999998 4788999999999998765 5555
Q ss_pred ecCCcceeecccCCCCC---------CCCC------Ccc---chhh------ccccccccccccEEEEecCCCChhhhHH
Q psy2640 202 SLPARTSVIAAANPVGG---------HYNR------AKT---VAEN------LRMGQALLSRFDLVFILLDNPDEHLDTL 257 (613)
Q Consensus 202 ~l~ar~svlAaaNP~~g---------~~~~------~~~---~~e~------i~l~~~llsRFDLi~~l~d~~~~~~d~~ 257 (613)
.+ .+|.++.++|--.. .|.. ... +.+. -.++|.+++|+|-|++.. .-+.+.-..
T Consensus 649 ~~-~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~-pL~~~~l~~ 726 (821)
T CHL00095 649 DF-KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFR-QLTKNDVWE 726 (821)
T ss_pred ec-CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeC-CCCHHHHHH
Confidence 55 47888888885321 1111 000 1111 127889999999766553 334444455
Q ss_pred HHHHHHH
Q psy2640 258 LSEHVMA 264 (613)
Q Consensus 258 la~~Il~ 264 (613)
|.+..+.
T Consensus 727 Iv~~~l~ 733 (821)
T CHL00095 727 IAEIMLK 733 (821)
T ss_pred HHHHHHH
Confidence 5555443
No 89
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=78.62 E-value=2.4 Score=46.78 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=50.0
Q ss_pred eecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCC
Q psy2640 111 ALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQ 190 (613)
Q Consensus 111 ~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq 190 (613)
.-.+|.+..|+||++++||++.|+. ..+..|...++.+
T Consensus 223 ~~~~g~~~~a~~gtl~l~~i~~l~~------------------------------------------~~q~~l~~~l~~~ 260 (445)
T TIGR02915 223 KQTLGKIEYAHGGTLFLDEIGDLPL------------------------------------------NLQAKLLRFLQER 260 (445)
T ss_pred cCCCCceeECCCCEEEEechhhCCH------------------------------------------HHHHHHHHHHhhC
Confidence 4457888999999999999999998 4788899999999
Q ss_pred eEEEecccceeecCCcceeecccCCC
Q psy2640 191 SISIAKASVVCSLPARTSVIAAANPV 216 (613)
Q Consensus 191 ~isi~kagi~~~l~ar~svlAaaNP~ 216 (613)
.++-. |.....+..+-+++++|+-
T Consensus 261 ~~~~~--~~~~~~~~~~rii~~~~~~ 284 (445)
T TIGR02915 261 VIERL--GGREEIPVDVRIVCATNQD 284 (445)
T ss_pred eEEeC--CCCceeeeceEEEEecCCC
Confidence 86543 4445677888888888753
No 90
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=78.13 E-value=1.9 Score=49.21 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=43.9
Q ss_pred cCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeE
Q psy2640 113 EAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSI 192 (613)
Q Consensus 113 e~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~i 192 (613)
.+|.+-.|++|+++|||++.|+. ..+..|...++++++
T Consensus 290 ~~g~~e~a~~GtL~LdeI~~L~~------------------------------------------~~Q~~Ll~~l~~~~~ 327 (520)
T PRK10820 290 KKGFFEQANGGSVLLDEIGEMSP------------------------------------------RMQAKLLRFLNDGTF 327 (520)
T ss_pred CCChhhhcCCCEEEEeChhhCCH------------------------------------------HHHHHHHHHHhcCCc
Confidence 35667789999999999999998 467889999998875
Q ss_pred EEecccceeecCCcceeecccC
Q psy2640 193 SIAKASVVCSLPARTSVIAAAN 214 (613)
Q Consensus 193 si~kagi~~~l~ar~svlAaaN 214 (613)
. ..|-....+..+-|+++++
T Consensus 328 ~--~~g~~~~~~~~vRiI~st~ 347 (520)
T PRK10820 328 R--RVGEDHEVHVDVRVICATQ 347 (520)
T ss_pred c--cCCCCcceeeeeEEEEecC
Confidence 3 3344445566666777766
No 91
>PRK15115 response regulator GlrR; Provisional
Probab=77.82 E-value=2.6 Score=46.54 Aligned_cols=63 Identities=19% Similarity=0.329 Sum_probs=50.4
Q ss_pred CCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhh
Q psy2640 108 GDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAM 187 (613)
Q Consensus 108 g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eam 187 (613)
|......|.+-.|++|+++|||++.++. ..+..|...+
T Consensus 215 ~~~~~~~g~~~~a~~gtl~l~~i~~l~~------------------------------------------~~q~~L~~~l 252 (444)
T PRK15115 215 GAVSNREGLFQAAEGGTLFLDEIGDMPA------------------------------------------PLQVKLLRVL 252 (444)
T ss_pred CCccCCCCcEEECCCCEEEEEccccCCH------------------------------------------HHHHHHHHHH
Confidence 4445567888999999999999999998 4788999999
Q ss_pred cCCeEEEecccceeecCCcceeecccC
Q psy2640 188 EQQSISIAKASVVCSLPARTSVIAAAN 214 (613)
Q Consensus 188 eqq~isi~kagi~~~l~ar~svlAaaN 214 (613)
+.+.+. ..|.....+.++-+++++|
T Consensus 253 ~~~~~~--~~g~~~~~~~~~rii~~~~ 277 (444)
T PRK15115 253 QERKVR--PLGSNRDIDIDVRIISATH 277 (444)
T ss_pred hhCCEE--eCCCCceeeeeEEEEEeCC
Confidence 999874 3355556677888888877
No 92
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=77.70 E-value=2.4 Score=49.89 Aligned_cols=107 Identities=22% Similarity=0.253 Sum_probs=68.0
Q ss_pred ccCCchhhhhHHHHhhhhh-cce----EEEecccccccCceEE-E---EeeC-CCCeeecCceeecccCceeccccccCC
Q psy2640 64 LSNEPQHTINCLGLAMHHY-IIS----VYVCGNTSTTSGLTVT-L---SREG-GGDFALEAGALVLADQGVCCIDEFDKM 133 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~-~r~----~~~~g~~~s~~gLta~-~---~~~~-~g~~~le~GalvLad~gv~ciDEfdkm 133 (613)
+.|.|+.++..+.-++|.. +|. +++.-..-+. ++.-. + .+.. +|...-..|.+-+|++|+++|||++.+
T Consensus 404 I~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~-~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L 482 (686)
T PRK15429 404 ILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA-GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDM 482 (686)
T ss_pred EECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhC
Confidence 6788899999888888853 322 2221111111 11000 0 0011 233333467778999999999999999
Q ss_pred CcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeeccc
Q psy2640 134 SAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAA 213 (613)
Q Consensus 134 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaa 213 (613)
+. ..+..|...++.+.+.-. |-....+..+=++|++
T Consensus 483 ~~------------------------------------------~~Q~~L~~~l~~~~~~~~--g~~~~~~~~~RiI~~t 518 (686)
T PRK15429 483 PL------------------------------------------ELQPKLLRVLQEQEFERL--GSNKIIQTDVRLIAAT 518 (686)
T ss_pred CH------------------------------------------HHHHHHHHHHHhCCEEeC--CCCCcccceEEEEEeC
Confidence 98 478889999999876543 4444566777788888
Q ss_pred CC
Q psy2640 214 NP 215 (613)
Q Consensus 214 NP 215 (613)
|.
T Consensus 519 ~~ 520 (686)
T PRK15429 519 NR 520 (686)
T ss_pred CC
Confidence 75
No 93
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=77.13 E-value=3.1 Score=48.57 Aligned_cols=150 Identities=20% Similarity=0.294 Sum_probs=83.5
Q ss_pred hccchhhhHHHHhhhhhcccc-hhhhhh---hccCCchhhhhHHHHhhhhhcceEEEecccccccCceEEEEeeC---CC
Q psy2640 36 ERRCYLVDIKVLMNDQIFNDQ-WKTFLQ---NLSNEPQHTINCLGLAMHHYIISVYVCGNTSTTSGLTVTLSREG---GG 108 (613)
Q Consensus 36 ~~~~~~~dvK~~i~~qlfgg~-~k~~~~---~l~~~p~~~~~~l~la~~~~~r~~~~~g~~~s~~gLta~~~~~~---~g 108 (613)
...||+++||.=|+--|-=.. .+.+.. -|.|-|+.++.=||-.+..+..--|+ =+...=+||. .|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv--------R~sLGGvrDEAEIRG 394 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV--------RISLGGVRDEAEIRG 394 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE--------EEecCccccHHHhcc
Confidence 468999999986654332111 111111 17888998887777655544311111 0001113443 33
Q ss_pred ---Cee-ecCcee------ecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchH
Q psy2640 109 ---DFA-LEAGAL------VLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSA 178 (613)
Q Consensus 109 ---~~~-le~Gal------vLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (613)
+|+ -=||.+ +=.-+=+..+||+|||+...+ | +
T Consensus 395 HRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~r-----------------G---------------------D 436 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFR-----------------G---------------------D 436 (782)
T ss_pred ccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCC-----------------C---------------------C
Confidence 332 113333 334566789999999998311 1 2
Q ss_pred HHHHHHhhhc-CCeEEEecccceeecC---CcceeecccCCCCCCCCCCccchhhccccccccccccEEEEe
Q psy2640 179 QHQALLEAME-QQSISIAKASVVCSLP---ARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFIL 246 (613)
Q Consensus 179 ~~~al~eame-qq~isi~kagi~~~l~---ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l 246 (613)
--+||+|++. .|.-++.- -.-.+| +...++|+||.. + .+|.|||+|-..|-+-
T Consensus 437 PaSALLEVLDPEQN~~F~D--hYLev~yDLS~VmFiaTANsl----~---------tIP~PLlDRMEiI~ls 493 (782)
T COG0466 437 PASALLEVLDPEQNNTFSD--HYLEVPYDLSKVMFIATANSL----D---------TIPAPLLDRMEVIRLS 493 (782)
T ss_pred hHHHHHhhcCHhhcCchhh--ccccCccchhheEEEeecCcc----c---------cCChHHhcceeeeeec
Confidence 3468999984 44444431 111222 234788999974 1 3899999999876543
No 94
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=74.68 E-value=8 Score=33.91 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEec
Q psy2640 442 KKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKK 495 (613)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~ 495 (613)
.++++.|+. ......+++++++ +.+.+++..+++.+++.|.++|.||-.
T Consensus 50 ~~Vl~~i~~--~~~~~~Gv~v~~I---~~~l~~~~~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 50 DKVLNFIKQ--QPNSEEGVHVDEI---AQQLGMSENEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp HHHHHHHHC------TTTEEHHHH---HHHSTS-HHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHh--cCCCCCcccHHHH---HHHhCcCHHHHHHHHHHHHhCCeEecc
Confidence 456677776 2234457889885 566699999999999999999999864
No 95
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=72.22 E-value=4.5 Score=44.90 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=47.4
Q ss_pred ecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCe
Q psy2640 112 LEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQS 191 (613)
Q Consensus 112 le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~ 191 (613)
-..|.+-.|+||+++|||++.++. ..+..|...++.+.
T Consensus 219 ~~~g~~~~a~~gtl~l~ei~~l~~------------------------------------------~~q~~ll~~l~~~~ 256 (463)
T TIGR01818 219 RRQGRFEQADGGTLFLDEIGDMPL------------------------------------------DAQTRLLRVLADGE 256 (463)
T ss_pred CCCCcEEECCCCeEEEEchhhCCH------------------------------------------HHHHHHHHHHhcCc
Confidence 346778899999999999999998 47888999999998
Q ss_pred EEEecccceeecCCcceeecccCC
Q psy2640 192 ISIAKASVVCSLPARTSVIAAANP 215 (613)
Q Consensus 192 isi~kagi~~~l~ar~svlAaaNP 215 (613)
++.. |-....+..+-+++++|+
T Consensus 257 ~~~~--~~~~~~~~~~rii~~~~~ 278 (463)
T TIGR01818 257 FYRV--GGRTPIKVDVRIVAATHQ 278 (463)
T ss_pred EEEC--CCCceeeeeeEEEEeCCC
Confidence 7653 444455666668888875
No 96
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=71.75 E-value=67 Score=34.11 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=27.2
Q ss_pred CCccccHHHHHHHHHhCCCCHHHHHHHHHH-HhhCCcEEecCCce
Q psy2640 456 SRSVFTVTELKQLATSANISVDNFFTFLTS-LNDQGFLLKKGKQL 499 (613)
Q Consensus 456 ~~~~~t~~el~~~a~~~gi~~~~~~~~i~~-L~~~G~i~~~g~~~ 499 (613)
+++.+.++- +|...|...+.+++.+|= |-++|++.....|.
T Consensus 274 ~GgPVGl~t---ia~~lge~~~TiEdv~EPyLiq~gfi~RTpRGR 315 (332)
T COG2255 274 GGGPVGLDT---IAAALGEDRDTIEDVIEPYLIQQGFIQRTPRGR 315 (332)
T ss_pred CCCCccHHH---HHHHhcCchhHHHHHHhHHHHHhchhhhCCCcc
Confidence 344444443 566667777888877775 67788887766664
No 97
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=71.38 E-value=3.1 Score=41.67 Aligned_cols=39 Identities=38% Similarity=0.654 Sum_probs=30.5
Q ss_pred cCCccchhhHHHHHHHHhhhCCcccCCCCCCCcceeecCCCCCCcchhh
Q psy2640 387 LCPSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQML 435 (613)
Q Consensus 387 d~~~I~~~~~~k~gl~l~l~GG~~~~~~~rg~idil~vgdpGtgKSq~l 435 (613)
|..+|.|++..|.++.....|| -|+|++|.||+|||-+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~----------h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG----------HHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC------------EEEES-CCCTHHHHH
T ss_pred ChhhhcCcHHHHHHHHHHHcCC----------CCeEEECCCCCCHHHHH
Confidence 4567899999999998888873 48999999999999883
No 98
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.17 E-value=3.8 Score=43.71 Aligned_cols=50 Identities=34% Similarity=0.485 Sum_probs=38.4
Q ss_pred ecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEe
Q psy2640 118 VLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIA 195 (613)
Q Consensus 118 vLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~ 195 (613)
-.|.+|+..|||+||+...--| +|-.+-+.|| ..++||+--||.-..||+
T Consensus 159 ~rAerGIIyIDEIDKIarkSeN----------------------~SITRDVSGE------GVQQALLKiiEGTvasVP 208 (408)
T COG1219 159 ERAERGIIYIDEIDKIARKSEN----------------------PSITRDVSGE------GVQQALLKIIEGTVASVP 208 (408)
T ss_pred HHHhCCeEEEechhhhhccCCC----------------------CCcccccCch------HHHHHHHHHHcCceeccC
Confidence 4688999999999999872111 2334556677 789999999998887876
No 99
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=68.39 E-value=6.1 Score=44.02 Aligned_cols=81 Identities=17% Similarity=0.271 Sum_probs=56.6
Q ss_pred eecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCC
Q psy2640 111 ALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQ 190 (613)
Q Consensus 111 ~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq 190 (613)
...+|.+..|+||.++|||++.|+. ..+..|...++++
T Consensus 222 ~~~~g~~~~a~~Gtl~l~~i~~l~~------------------------------------------~~q~~L~~~l~~~ 259 (469)
T PRK10923 222 TIRQGRFEQADGGTLFLDEIGDMPL------------------------------------------DVQTRLLRVLADG 259 (469)
T ss_pred cCCCCCeeECCCCEEEEeccccCCH------------------------------------------HHHHHHHHHHhcC
Confidence 3457778899999999999999998 4788899999999
Q ss_pred eEEEecccceeecCCcceeecccCCCCCCCCCCccchhhcccccccccccc
Q psy2640 191 SISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFD 241 (613)
Q Consensus 191 ~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFD 241 (613)
.+.-. |-....+..+-+++++|.. . ....+.-.+.+.|+.||.
T Consensus 260 ~~~~~--~~~~~~~~~~rii~~~~~~-----l-~~~~~~~~~~~~L~~~l~ 302 (469)
T PRK10923 260 QFYRV--GGYAPVKVDVRIIAATHQN-----L-EQRVQEGKFREDLFHRLN 302 (469)
T ss_pred cEEeC--CCCCeEEeeEEEEEeCCCC-----H-HHHHHcCCchHHHHHHhc
Confidence 87653 4334556778888888752 1 011223335555666663
No 100
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.95 E-value=11 Score=42.67 Aligned_cols=12 Identities=33% Similarity=0.479 Sum_probs=11.3
Q ss_pred eeccccccCCCc
Q psy2640 124 VCCIDEFDKMSA 135 (613)
Q Consensus 124 v~ciDEfdkm~~ 135 (613)
|+.|||.+.|+.
T Consensus 124 V~IIDEah~Ls~ 135 (484)
T PRK14956 124 VYIIDEVHMLTD 135 (484)
T ss_pred EEEEechhhcCH
Confidence 899999999988
No 101
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=67.59 E-value=15 Score=37.86 Aligned_cols=27 Identities=7% Similarity=0.159 Sum_probs=23.5
Q ss_pred HHHHHHHhhcccccccccChhHHHHHH
Q psy2640 562 QLYQLMSARAKCELREEASKQDAQDVI 588 (613)
Q Consensus 562 sLiRLseArAkl~lre~vt~~Da~~vv 588 (613)
++|+++.+.+...+|..++.+|...+.
T Consensus 228 ~~i~~~~~~~~~~~~~~~~~~~~~~~~ 254 (262)
T TIGR02640 228 ASLMIAEVATQQDIPVDVDDEDFVDLC 254 (262)
T ss_pred HHHHHHHHHHHcCCCCCCCcHHHHHHH
Confidence 389999988999999999999988764
No 102
>PHA01747 putative ATP-dependent protease
Probab=63.32 E-value=24 Score=38.64 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=55.6
Q ss_pred hcceEEEecccccccCceEEEEeeC-CCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccc
Q psy2640 82 YIISVYVCGNTSTTSGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAF 160 (613)
Q Consensus 82 ~~r~~~~~g~~~s~~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~ 160 (613)
+|.++ ||.-.|-|-|. .+. +| ..|.+-+.| ++|.||+..++..+-
T Consensus 214 sp~~i--SGG~~TvA~LF----yN~~t~----~~GLVg~~D--~VaFDEVa~i~f~~~---------------------- 259 (425)
T PHA01747 214 FNFRY--YTEPPTYANLV----YDAKTN----ALGLVFLSN--GLIFDEIQTWKDSNM---------------------- 259 (425)
T ss_pred CCcee--eCCCCchHHhe----EecCCC----ceeEEeecc--EEEEEccccccCCCH----------------------
Confidence 56554 55555555444 343 44 345554443 578999999885210
Q ss_pred cccccccccccccccchHHHHHHHhhhcCCeEEEeccccee--ecCCcceeecccCCC
Q psy2640 161 ITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVC--SLPARTSVIAAANPV 216 (613)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~--~l~ar~svlAaaNP~ 216 (613)
.+--+.|.--||++..+-.+.+... +.++.++++-+-|+-
T Consensus 260 ----------------kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNin 301 (425)
T PHA01747 260 ----------------RAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPD 301 (425)
T ss_pred ----------------HHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCCC
Confidence 0245677888999999987754444 788899999988865
No 103
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=62.42 E-value=4.6 Score=35.84 Aligned_cols=30 Identities=40% Similarity=0.544 Sum_probs=22.6
Q ss_pred CCcceeecccCCCCCCCCCCccchhhcccccccc-ccccEEEEe
Q psy2640 204 PARTSVIAAANPVGGHYNRAKTVAENLRMGQALL-SRFDLVFIL 246 (613)
Q Consensus 204 ~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~ll-sRFDLi~~l 246 (613)
+.++.+++++|-. + .++++++ +|||-.+.+
T Consensus 100 ~~~~~vI~ttn~~----~---------~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 100 NSRVIVIATTNSP----D---------KIDPALLRSRFDRRIEF 130 (132)
T ss_dssp SSSEEEEEEESSG----G---------GSCHHHHSTTSEEEEEE
T ss_pred cccceeEEeeCCh----h---------hCCHhHHhCCCcEEEEc
Confidence 5678899999862 2 3788889 999977654
No 104
>PRK10865 protein disaggregation chaperone; Provisional
Probab=62.23 E-value=12 Score=45.36 Aligned_cols=99 Identities=15% Similarity=0.225 Sum_probs=62.6
Q ss_pred cCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccce
Q psy2640 121 DQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVV 200 (613)
Q Consensus 121 d~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~ 200 (613)
..+++++||++|++. ..+..|...|+.+.++-. .|..
T Consensus 670 p~~vLllDEieka~~------------------------------------------~v~~~Ll~ile~g~l~d~-~gr~ 706 (857)
T PRK10865 670 PYSVILLDEVEKAHP------------------------------------------DVFNILLQVLDDGRLTDG-QGRT 706 (857)
T ss_pred CCCeEEEeehhhCCH------------------------------------------HHHHHHHHHHhhCceecC-CceE
Confidence 458999999999998 478899999999998743 3544
Q ss_pred eecCCcceeecccCCCCC----CCCCC--ccchh------hccccccccccccEEEEecCCCChhhhHHHHHHHHH
Q psy2640 201 CSLPARTSVIAAANPVGG----HYNRA--KTVAE------NLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMA 264 (613)
Q Consensus 201 ~~l~ar~svlAaaNP~~g----~~~~~--~~~~e------~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~ 264 (613)
..+. +|.|+.++|--.. ++... ..+.+ .-.+.|.+++|+|-+++..- ...+.-..|.++.+.
T Consensus 707 vd~r-n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~P-L~~edl~~Iv~~~L~ 780 (857)
T PRK10865 707 VDFR-NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHP-LGEQHIASIAQIQLQ 780 (857)
T ss_pred Eeec-ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCC-CCHHHHHHHHHHHHH
Confidence 4443 4678888885211 11110 00111 12478889999997665543 444444555555554
No 105
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=61.96 E-value=48 Score=37.18 Aligned_cols=84 Identities=21% Similarity=0.225 Sum_probs=60.0
Q ss_pred hhcceEEEecccccccCceEEEEeeCCCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccc
Q psy2640 81 HYIISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAF 160 (613)
Q Consensus 81 ~~~r~~~~~g~~~s~~gLta~~~~~~~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~ 160 (613)
..|-+.++||.-.|.|-|..... +| +.|.+-+- =++|.||+..++-.+.
T Consensus 228 iSp~~~liSGG~~T~A~LFyn~~---~~----~~GlV~~~--D~VafDEv~~i~f~d~---------------------- 276 (457)
T PF13337_consen 228 ISPYGILISGGQVTVAKLFYNMS---TG----QIGLVGRW--DVVAFDEVAGIKFKDK---------------------- 276 (457)
T ss_pred cCcccEEEECCCcchHHheeecc---CC----cceeeeec--cEEEEEeccCcccCCh----------------------
Confidence 35667889998888887775433 33 34444333 3678999999876321
Q ss_pred cccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCC
Q psy2640 161 ITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPV 216 (613)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~ 216 (613)
+.-+.|.--||+++.+..+ .+..|.+|++-..|..
T Consensus 277 -----------------d~i~imK~YMesG~fsRG~----~~i~a~as~vf~GNi~ 311 (457)
T PF13337_consen 277 -----------------DEIQIMKDYMESGSFSRGK----EEINADASMVFVGNIN 311 (457)
T ss_pred -----------------HHHHHHHHHHhccceeecc----cccccceeEEEEcCcC
Confidence 2447899999999999876 3778889988888854
No 106
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=60.45 E-value=1.5e+02 Score=36.49 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=25.2
Q ss_pred cccHHHHH----HHHH----hCCCCH--HHHHHHHHHHhhCCcEEecCC
Q psy2640 459 VFTVTELK----QLAT----SANISV--DNFFTFLTSLNDQGFLLKKGK 497 (613)
Q Consensus 459 ~~t~~el~----~~a~----~~gi~~--~~~~~~i~~L~~~G~i~~~g~ 497 (613)
.++.+++. .+|. ..|++. ..+.++|..|..-|+++....
T Consensus 1040 ~i~TGEVYerYk~Lce~~Gk~iGv~plTqRV~d~L~eL~~LGIIl~ep~ 1088 (1164)
T PTZ00112 1040 IIPYKKVLNRYKVLVETSGKYIGMCSNNELFKIMLDKLVKMGILLIRPY 1088 (1164)
T ss_pred ceeHHHHHHHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCeEEecCC
Confidence 46666653 3455 234422 268999999999998876443
No 107
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=59.64 E-value=16 Score=43.83 Aligned_cols=106 Identities=19% Similarity=0.220 Sum_probs=65.9
Q ss_pred CcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC--CccchhhHHHHHHHHhhh
Q psy2640 329 PELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC--PSIFGHEMVKAGLLLALF 406 (613)
Q Consensus 329 P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~--~~I~~~~~~k~gl~l~l~ 406 (613)
-.+++++.+.+....-++++.........++---|+.+..|=...+.+ +-.+....... ...||++.+|..++--+.
T Consensus 261 ~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~-~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~ 339 (784)
T PRK10787 261 AKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSK-VKKDLRQAQEILDTDHYGLERVKDRILEYLA 339 (784)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHhCCCCCCCc-ccccHHHHHHHhhhhccCHHHHHHHHHHHHH
Confidence 468899999988888888876655555666767888887665433111 11122211122 568999999998752221
Q ss_pred CCcccCCCCCCCcceeecCCCCCCcchhhhH
Q psy2640 407 GGCHSTNGSRGDAHVLIVGDPGLGKSQMLHA 437 (613)
Q Consensus 407 GG~~~~~~~rg~idil~vgdpGtgKSq~l~~ 437 (613)
-. ......+|.+ ++++|.||+|||...+.
T Consensus 340 ~~-~~~~~~~g~~-i~l~GppG~GKTtl~~~ 368 (784)
T PRK10787 340 VQ-SRVNKIKGPI-LCLVGPPGVGKTSLGQS 368 (784)
T ss_pred HH-HhcccCCCce-EEEECCCCCCHHHHHHH
Confidence 00 0112235554 77899999999998543
No 108
>KOG2004|consensus
Probab=58.33 E-value=9.3 Score=44.86 Aligned_cols=74 Identities=30% Similarity=0.464 Sum_probs=0.0
Q ss_pred CchhhhhHHHHhhhhhcceEEEecccccccCceEEEEeeCCCCeeecCceeecccCceeccccccCCCcccccccchhcc
Q psy2640 67 EPQHTINCLGLAMHHYIISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAK 146 (613)
Q Consensus 67 ~p~~~~~~l~la~~~~~r~~~~~g~~~s~~gLta~~~~~~~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~ 146 (613)
+|++.++||.-+...-| +..|||+||+-..+..
T Consensus 491 MPGkiIq~LK~v~t~NP----------------------------------------liLiDEvDKlG~g~qG------- 523 (906)
T KOG2004|consen 491 MPGKIIQCLKKVKTENP----------------------------------------LILIDEVDKLGSGHQG------- 523 (906)
T ss_pred CChHHHHHHHhhCCCCc----------------------------------------eEEeehhhhhCCCCCC-------
Q ss_pred cccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcc--------------eeecc
Q psy2640 147 AMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPART--------------SVIAA 212 (613)
Q Consensus 147 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~--------------svlAa 212 (613)
+--+||+|.+.-.. |+.+ -++|+
T Consensus 524 -------------------------------DPasALLElLDPEQ------------NanFlDHYLdVp~DLSkVLFicT 560 (906)
T KOG2004|consen 524 -------------------------------DPASALLELLDPEQ------------NANFLDHYLDVPVDLSKVLFICT 560 (906)
T ss_pred -------------------------------ChHHHHHHhcChhh------------ccchhhhccccccchhheEEEEe
Q ss_pred cCCCCCCCCCCccchhhccccccccccccEE
Q psy2640 213 ANPVGGHYNRAKTVAENLRMGQALLSRFDLV 243 (613)
Q Consensus 213 aNP~~g~~~~~~~~~e~i~l~~~llsRFDLi 243 (613)
||-+ +. +|+||++|-.+|
T Consensus 561 AN~i----dt---------IP~pLlDRMEvI 578 (906)
T KOG2004|consen 561 ANVI----DT---------IPPPLLDRMEVI 578 (906)
T ss_pred cccc----cc---------CChhhhhhhhee
No 109
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=57.12 E-value=9.6 Score=43.93 Aligned_cols=98 Identities=24% Similarity=0.258 Sum_probs=68.8
Q ss_pred hccCCchhhhhHHHHhhhhhcceEEEecccccccCceEEE----EeeC--------------CCCe-eecCceeecccCc
Q psy2640 63 NLSNEPQHTINCLGLAMHHYIISVYVCGNTSTTSGLTVTL----SREG--------------GGDF-ALEAGALVLADQG 123 (613)
Q Consensus 63 ~l~~~p~~~~~~l~la~~~~~r~~~~~g~~~s~~gLta~~----~~~~--------------~g~~-~le~GalvLad~g 123 (613)
-+-|.|+..+..+.-|+|+.. +.+|..++| ..+. ||.+ -..-|.+-.||||
T Consensus 340 ll~GEtGtGKe~laraiH~~s----------~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG 409 (606)
T COG3284 340 LLQGETGTGKEVLARAIHQNS----------EAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG 409 (606)
T ss_pred EecCCcchhHHHHHHHHHhcc----------cccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC
Confidence 377888899999998888743 134433332 2111 2211 1234566899999
Q ss_pred eeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeec
Q psy2640 124 VCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSL 203 (613)
Q Consensus 124 v~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l 203 (613)
.+++||+..|+. +-+++|+.++++++|+=- |... -
T Consensus 410 tlFldeIgd~p~------------------------------------------~~Qs~LLrVl~e~~v~p~--g~~~-~ 444 (606)
T COG3284 410 TLFLDEIGDMPL------------------------------------------ALQSRLLRVLQEGVVTPL--GGTR-I 444 (606)
T ss_pred ccHHHHhhhchH------------------------------------------HHHHHHHHHHhhCceecc--CCcc-e
Confidence 999999999988 578999999999998643 4444 6
Q ss_pred CCcceeecccCC
Q psy2640 204 PARTSVIAAANP 215 (613)
Q Consensus 204 ~ar~svlAaaNP 215 (613)
+-..-||+|++-
T Consensus 445 ~vdirvi~ath~ 456 (606)
T COG3284 445 KVDIRVIAATHR 456 (606)
T ss_pred eEEEEEEeccCc
Confidence 777788888873
No 110
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=56.40 E-value=14 Score=40.78 Aligned_cols=108 Identities=15% Similarity=0.193 Sum_probs=71.0
Q ss_pred ccCCchhhhhHHHHhhhhh----cceEEEeccccc--ccCceEE---EEeeC-CCCeeecCceeecccCceeccccccCC
Q psy2640 64 LSNEPQHTINCLGLAMHHY----IISVYVCGNTST--TSGLTVT---LSREG-GGDFALEAGALVLADQGVCCIDEFDKM 133 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~----~r~~~~~g~~~s--~~gLta~---~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm 133 (613)
+.|.++..+.....++|-. +++.+++=|++. ..++-+. ..+-. ||...=.+|.+-.||||++++||+-.|
T Consensus 106 i~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~L 185 (403)
T COG1221 106 IIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRL 185 (403)
T ss_pred EecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhC
Confidence 5777778887777777732 223333322221 1111111 11112 565666789999999999999999999
Q ss_pred CcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeeccc
Q psy2640 134 SAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAA 213 (613)
Q Consensus 134 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaa 213 (613)
+. .-+..|.-.||.+++.-- |-....+...=+++|.
T Consensus 186 P~------------------------------------------~~Q~kLl~~le~g~~~rv--G~~~~~~~dVRli~AT 221 (403)
T COG1221 186 PP------------------------------------------EGQEKLLRVLEEGEYRRV--GGSQPRPVDVRLICAT 221 (403)
T ss_pred CH------------------------------------------hHHHHHHHHHHcCceEec--CCCCCcCCCceeeecc
Confidence 98 368889999999998732 3355677777777777
Q ss_pred CC
Q psy2640 214 NP 215 (613)
Q Consensus 214 NP 215 (613)
|-
T Consensus 222 ~~ 223 (403)
T COG1221 222 TE 223 (403)
T ss_pred cc
Confidence 63
No 111
>KOG0991|consensus
Probab=55.83 E-value=17 Score=37.40 Aligned_cols=42 Identities=10% Similarity=0.152 Sum_probs=23.5
Q ss_pred hhccchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHH
Q psy2640 35 EERRCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLG 76 (613)
Q Consensus 35 ~~~~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~ 76 (613)
.|-|.|--.--.+++..|+|...|+-.=+|-..-+++|.+..
T Consensus 55 GpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVR 96 (333)
T KOG0991|consen 55 GPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVR 96 (333)
T ss_pred CCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHH
Confidence 455666666666677777776666543334333455554443
No 112
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.08 E-value=39 Score=36.64 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhh-hcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHH
Q psy2640 312 APLLHKYLAYARK-YVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLV 367 (613)
Q Consensus 312 ~~lLrkYI~~ar~-~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsli 367 (613)
..++++|.+..+. .+ .-.++++|.+.|.+.-..+..... .|-.|-|-.++
T Consensus 350 ~sLikQY~aLlkTE~v-~l~FtddaI~~iAeiA~~vN~~~E-----NIGARRLhTvl 400 (444)
T COG1220 350 ASLIKQYKALLKTEGV-ELEFTDDAIKRIAEIAYQVNEKTE-----NIGARRLHTVL 400 (444)
T ss_pred hHHHHHHHHHHhhcCe-eEEecHHHHHHHHHHHHHhccccc-----chhHHHHHHHH
Confidence 4789999988775 34 558999999999988877764332 25566655554
No 113
>KOG3347|consensus
Probab=54.17 E-value=38 Score=32.66 Aligned_cols=19 Identities=42% Similarity=0.870 Sum_probs=16.8
Q ss_pred CCCcceeecCCCCCCcchh
Q psy2640 416 RGDAHVLIVGDPGLGKSQM 434 (613)
Q Consensus 416 rg~idil~vgdpGtgKSq~ 434 (613)
|-..++|+-|.||+|||..
T Consensus 5 r~~PNILvtGTPG~GKstl 23 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTL 23 (176)
T ss_pred hcCCCEEEeCCCCCCchhH
Confidence 5567999999999999998
No 114
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=53.95 E-value=66 Score=26.13 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=35.0
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecC--CceEEEe
Q psy2640 459 VFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKG--KQLYQLM 503 (613)
Q Consensus 459 ~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g--~~~~~l~ 503 (613)
.++..+ +|++.|++...+...+..|.+.|++...+ +..|.+-
T Consensus 22 ~~ta~e---La~~lgl~~~~v~r~L~~L~~~G~V~~~~~~~~~W~i~ 65 (68)
T smart00550 22 TSTALQ---LAKNLGLPKKEVNRVLYSLEKKGKVCKQGGTPPLWKLT 65 (68)
T ss_pred CcCHHH---HHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCceEee
Confidence 377776 68999999999999999999999998764 3677764
No 115
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=53.01 E-value=81 Score=24.58 Aligned_cols=41 Identities=20% Similarity=0.430 Sum_probs=33.6
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCceEEE
Q psy2640 459 VFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQL 502 (613)
Q Consensus 459 ~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l 502 (613)
.++..+ ++...|++...+...+..|.++|++...+.+.|.+
T Consensus 25 ~~s~~e---la~~~g~s~~tv~r~l~~L~~~g~i~~~~~~~~~l 65 (67)
T cd00092 25 PLTRQE---IADYLGLTRETVSRTLKELEEEGLISRRGRGKYRV 65 (67)
T ss_pred CcCHHH---HHHHHCCCHHHHHHHHHHHHHCCCEEecCCCeEEe
Confidence 455555 68888999999999999999999999877566765
No 116
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=52.53 E-value=37 Score=39.43 Aligned_cols=110 Identities=8% Similarity=-0.013 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhhCCcEEecCCceEEEechhhHHHHHhhhhhhccccccchhhhcccchhhhccccccccccccCch---
Q psy2640 476 VDNFFTFLTSLNDQGFLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLND--- 552 (613)
Q Consensus 476 ~~~~~~~i~~L~~~G~i~~~g~~~~~l~~~~~~~~i~~~k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--- 552 (613)
..-++.+++.|++.-+.+...+..+.+..+|-++-. .+.. ....+|++++++||+..+.+-.....
T Consensus 107 ~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat--------~~~~---~~~~~L~~~lLDRf~l~v~v~~~~~~~~~ 175 (584)
T PRK13406 107 PGTAARLAAALDTGEVRLERDGLALRLPARFGLVAL--------DEGA---EEDERAPAALADRLAFHLDLDGLALRDAR 175 (584)
T ss_pred HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEec--------CCCh---hcccCCCHHhHhheEEEEEcCCCChHHhc
Confidence 344456667776666666666666776666654331 0111 12246888888888887655421100
Q ss_pred -------------------------hHHHHHHH-----------HHHHHHHHhhcccccccccChhHHHHHHHH-hhhcc
Q psy2640 553 -------------------------QGFLLKKG-----------KQLYQLMSARAKCELREEASKQDAQDVIDI-MKWSL 595 (613)
Q Consensus 553 -------------------------~~~y~~l~-----------esLiRLseArAkl~lre~vt~~Da~~vv~i-m~~s~ 595 (613)
..++.++- -.++|.+.|+|=|+=|+.|+.+|+.+|+.+ +.|.+
T Consensus 176 ~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL~hR~ 255 (584)
T PRK13406 176 EIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVLAPRA 255 (584)
T ss_pred ccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhc
Confidence 23444432 129999999999999999999999999875 44555
Q ss_pred h
Q psy2640 596 I 596 (613)
Q Consensus 596 ~ 596 (613)
.
T Consensus 256 ~ 256 (584)
T PRK13406 256 T 256 (584)
T ss_pred c
Confidence 3
No 117
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=52.34 E-value=27 Score=34.10 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=46.3
Q ss_pred ceeecCCCCCCcchhhhHHHHHH--HHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCC
Q psy2640 420 HVLIVGDPGLGKSQMLHACCAAK--KFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGK 497 (613)
Q Consensus 420 dil~vgdpGtgKSq~l~~~~~~~--~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~ 497 (613)
++.++|-+|.|||..=++.++.. .|++.=...... ...++.++.+.--+.++..-+.+.+.+.+...+.++..|+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~---~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGG 80 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKR---TGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGG 80 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHH---HCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCC
Confidence 56689999999999855544443 344321221111 1356777644322334444444444444555569999999
Q ss_pred ceEEEe
Q psy2640 498 QLYQLM 503 (613)
Q Consensus 498 ~~~~l~ 503 (613)
|.+...
T Consensus 81 G~v~~~ 86 (172)
T COG0703 81 GAVLSE 86 (172)
T ss_pred ccccCH
Confidence 976533
No 118
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.72 E-value=29 Score=39.26 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=14.8
Q ss_pred ecccCceeccccccCCCc
Q psy2640 118 VLADQGVCCIDEFDKMSA 135 (613)
Q Consensus 118 vLad~gv~ciDEfdkm~~ 135 (613)
..++..+++|||++.++.
T Consensus 114 ~~~~~kVvIIDE~h~Lt~ 131 (472)
T PRK14962 114 MEGKYKVYIIDEVHMLTK 131 (472)
T ss_pred hcCCeEEEEEEChHHhHH
Confidence 346778999999999976
No 119
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=49.91 E-value=31 Score=35.98 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=43.5
Q ss_pred HHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHH
Q psy2640 179 QHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLL 258 (613)
Q Consensus 179 ~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~l 258 (613)
..+.|++-|+++-.-=.+.--...+ -.+.++||+||..|+. .+++++++.|-++ .++.|+.+.-..|
T Consensus 122 ~iElLRQ~i~~~g~yd~~~~~~~~i-~~i~~vaa~~p~~Gr~----------~is~R~~r~f~i~--~~~~p~~~sl~~I 188 (272)
T PF12775_consen 122 PIELLRQLIDYGGFYDRKKLEWKSI-EDIQFVAAMNPTGGRN----------PISPRFLRHFNIL--NIPYPSDESLNTI 188 (272)
T ss_dssp HHHHHHHHHHCSEEECTTTTEEEEE-CSEEEEEEESSTTT------------SHHHHHHTTEEEE--E----TCCHHHHH
T ss_pred HHHHHHHHHHhcCcccCCCcEEEEE-eeeEEEEecCCCCCCC----------CCChHHhhheEEE--EecCCChHHHHHH
Confidence 4678999999876432221111122 2467889999976653 3788999999543 3345555555556
Q ss_pred HHHHHHhh
Q psy2640 259 SEHVMASL 266 (613)
Q Consensus 259 a~~Il~~~ 266 (613)
=..++..+
T Consensus 189 f~~il~~~ 196 (272)
T PF12775_consen 189 FSSILQSH 196 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 56666655
No 120
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=49.58 E-value=1.2e+02 Score=36.18 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=17.1
Q ss_pred ccChhHHHHHHHHhhhcchh
Q psy2640 578 EASKQDAQDVIDIMKWSLID 597 (613)
Q Consensus 578 ~vt~~Da~~vv~im~~s~~~ 597 (613)
.+|.+|.++|++-++.|.-.
T Consensus 697 ~i~~~~f~~al~~~~ps~~~ 716 (733)
T TIGR01243 697 KVEMRHFLEALKKVKPSVSK 716 (733)
T ss_pred cccHHHHHHHHHHcCCCCCH
Confidence 68999999999988888654
No 121
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=48.36 E-value=37 Score=39.70 Aligned_cols=99 Identities=20% Similarity=0.272 Sum_probs=53.0
Q ss_pred cCChHHHHHHHHHHHHHHhcc---CCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCccchhhHHHHHHHHhhh
Q psy2640 330 ELSTEAALLLQEFYLNLRKHH---HSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALF 406 (613)
Q Consensus 330 ~Ls~eA~~~L~~~Yv~lR~~~---~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~~~~k~gl~l~l~ 406 (613)
++.+...+.-.+|..++|.+- ........|..++..+..+.... -.-.+.+.+.+....+++|++..-..+.-...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia 171 (615)
T TIGR02903 93 KVETRMQERQNKYLEEIRLQVLKEEKGPENSSTLKKLERLEKLEKKK-LHKSAQSLLRPRAFSEIVGQERAIKALLAKVA 171 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHH-hhhHHhhhcCcCcHHhceeCcHHHHHHHHHHh
Confidence 344455566667777777321 11122234666666665554322 11123333344455677787655444433222
Q ss_pred CCcccCCCCCCCcceeecCCCCCCcchhhhH
Q psy2640 407 GGCHSTNGSRGDAHVLIVGDPGLGKSQMLHA 437 (613)
Q Consensus 407 GG~~~~~~~rg~idil~vgdpGtgKSq~l~~ 437 (613)
.+ ...++++.|.||+|||.+.+.
T Consensus 172 ~~--------~~~~vlL~Gp~GtGKTTLAr~ 194 (615)
T TIGR02903 172 SP--------FPQHIILYGPPGVGKTTAARL 194 (615)
T ss_pred cC--------CCCeEEEECCCCCCHHHHHHH
Confidence 11 123688999999999998443
No 122
>CHL00195 ycf46 Ycf46; Provisional
Probab=48.00 E-value=55 Score=37.18 Aligned_cols=35 Identities=34% Similarity=0.555 Sum_probs=24.1
Q ss_pred CcceeecccCCCCCCCCCCccchhhcccccccc--ccccEEEEecCCCChh
Q psy2640 205 ARTSVIAAANPVGGHYNRAKTVAENLRMGQALL--SRFDLVFILLDNPDEH 253 (613)
Q Consensus 205 ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~ll--sRFDLi~~l~d~~~~~ 253 (613)
.+.+|+|++|-+ + .+|++++ +|||.+|. ++-|+.+
T Consensus 359 ~~V~vIaTTN~~----~---------~Ld~allR~GRFD~~i~-v~lP~~~ 395 (489)
T CHL00195 359 SPVFVVATANNI----D---------LLPLEILRKGRFDEIFF-LDLPSLE 395 (489)
T ss_pred CceEEEEecCCh----h---------hCCHHHhCCCcCCeEEE-eCCcCHH
Confidence 457899999854 1 3777777 59998765 4555543
No 123
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=47.54 E-value=51 Score=23.85 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=29.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhCCcEEecCCceEEE
Q psy2640 467 QLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQL 502 (613)
Q Consensus 467 ~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l 502 (613)
++|...|++...+...+..|.++|++...+ +.|.+
T Consensus 13 ~la~~l~~s~~tv~~~l~~L~~~g~l~~~~-~~~~i 47 (48)
T smart00419 13 EIAELLGLTRETVSRTLKRLEKEGLISREG-GRIVI 47 (48)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEEeC-CEEEE
Confidence 367888999999999999999999998765 56654
No 124
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.12 E-value=35 Score=37.66 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=13.3
Q ss_pred cCceeccccccCCCc
Q psy2640 121 DQGVCCIDEFDKMSA 135 (613)
Q Consensus 121 d~gv~ciDEfdkm~~ 135 (613)
.+++++|||++.++.
T Consensus 92 ~~~vL~IDEi~~l~~ 106 (413)
T PRK13342 92 RRTILFIDEIHRFNK 106 (413)
T ss_pred CceEEEEechhhhCH
Confidence 567999999999987
No 125
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=46.82 E-value=1.5e+02 Score=30.60 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=23.6
Q ss_pred hhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhhhh
Q psy2640 40 YLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHH 81 (613)
Q Consensus 40 ~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~~~ 81 (613)
++.+++..+...+=++..+.+ -+.|.|+.++..+..+++.
T Consensus 21 g~~~~~~~l~~~i~~~~~~~~--ll~G~~G~GKt~~~~~l~~ 60 (319)
T PRK00440 21 GQEEIVERLKSYVKEKNMPHL--LFAGPPGTGKTTAALALAR 60 (319)
T ss_pred CcHHHHHHHHHHHhCCCCCeE--EEECCCCCCHHHHHHHHHH
Confidence 455566555555444443333 4678888888777665543
No 126
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=45.08 E-value=1.2e+02 Score=25.37 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=35.9
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEec-CCceEEEech
Q psy2640 459 VFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKK-GKQLYQLMSA 505 (613)
Q Consensus 459 ~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~-g~~~~~l~~~ 505 (613)
.++..+ ++...|++...+...+..|.+.|++... ..+.|.+-.+
T Consensus 20 ~~t~~~---ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~ 64 (91)
T smart00346 20 GLTLAE---LAERLGLSKSTAHRLLNTLQELGYVEQDGQNGRYRLGPK 64 (91)
T ss_pred CcCHHH---HHHHhCCCHHHHHHHHHHHHHCCCeeecCCCCceeecHH
Confidence 577777 5777899999999999999999999875 3567887543
No 127
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.99 E-value=58 Score=39.72 Aligned_cols=15 Identities=33% Similarity=0.295 Sum_probs=13.0
Q ss_pred cCceeccccccCCCc
Q psy2640 121 DQGVCCIDEFDKMSA 135 (613)
Q Consensus 121 d~gv~ciDEfdkm~~ 135 (613)
..-|+.|||.++|+.
T Consensus 119 k~KViIIDEAh~LT~ 133 (944)
T PRK14949 119 RFKVYLIDEVHMLSR 133 (944)
T ss_pred CcEEEEEechHhcCH
Confidence 456899999999988
No 128
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=44.69 E-value=12 Score=33.97 Aligned_cols=18 Identities=44% Similarity=0.829 Sum_probs=14.7
Q ss_pred ceeecCCCCCCcchhhhH
Q psy2640 420 HVLIVGDPGLGKSQMLHA 437 (613)
Q Consensus 420 dil~vgdpGtgKSq~l~~ 437 (613)
+++++|.||+|||.+.+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~ 18 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARE 18 (139)
T ss_dssp EEEEEESSSSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 467899999999998533
No 129
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=43.61 E-value=89 Score=26.16 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=37.6
Q ss_pred CCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEe-cCC-ceEEEechhhHHH
Q psy2640 456 SRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLK-KGK-QLYQLMSAKKFIS 510 (613)
Q Consensus 456 ~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~-~g~-~~~~l~~~~~~~~ 510 (613)
....++..+ +|+..+++...+..++..|...|++-. +|+ |-|.|...-+.++
T Consensus 22 ~~~~~s~~e---iA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~L~~~~~~It 75 (83)
T PF02082_consen 22 DGKPVSSKE---IAERLGISPSYLRKILQKLKKAGLIESSRGRGGGYRLARPPEEIT 75 (83)
T ss_dssp TSC-BEHHH---HHHHHTS-HHHHHHHHHHHHHTTSEEEETSTTSEEEESS-CCGSB
T ss_pred CCCCCCHHH---HHHHHCcCHHHHHHHHHHHhhCCeeEecCCCCCceeecCCHHHCC
Confidence 333477777 688889999999999999999999874 443 7788875554443
No 130
>PLN03025 replication factor C subunit; Provisional
Probab=43.15 E-value=49 Score=35.02 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=13.0
Q ss_pred cCceeccccccCCCc
Q psy2640 121 DQGVCCIDEFDKMSA 135 (613)
Q Consensus 121 d~gv~ciDEfdkm~~ 135 (613)
...+++|||.|.|+.
T Consensus 99 ~~kviiiDE~d~lt~ 113 (319)
T PLN03025 99 RHKIVILDEADSMTS 113 (319)
T ss_pred CeEEEEEechhhcCH
Confidence 356899999999988
No 131
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=40.84 E-value=1.4e+02 Score=36.31 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=54.4
Q ss_pred eeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q psy2640 208 SVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPN 287 (613)
Q Consensus 208 svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~ 287 (613)
.+|+|++|. -+..-+...++|.+||.. +.+..|+.+.-..+-..+...+..
T Consensus 318 ~~IgaTT~~--------e~~~~~~~d~AL~rRf~~--i~v~eps~~~~~~iL~~~~~~~e~------------------- 368 (852)
T TIGR03345 318 RTIAATTWA--------EYKKYFEKDPALTRRFQV--VKVEEPDEETAIRMLRGLAPVLEK------------------- 368 (852)
T ss_pred EEEEecCHH--------HHhhhhhccHHHHHhCeE--EEeCCCCHHHHHHHHHHHHHhhhh-------------------
Confidence 356777763 112235688999999964 456677765555544333332200
Q ss_pred CCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHH
Q psy2640 288 SVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLR 347 (613)
Q Consensus 288 ~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR 347 (613)
...-.++.+.+..-+.++.++++.-.|++.|.+.|-+.--..|
T Consensus 369 -----------------~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~ 411 (852)
T TIGR03345 369 -----------------HHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVA 411 (852)
T ss_pred -----------------cCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHH
Confidence 0011256667777777777776555777777777766444433
No 132
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=40.82 E-value=63 Score=24.36 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=29.2
Q ss_pred cHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCceE
Q psy2640 461 TVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLY 500 (613)
Q Consensus 461 t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~ 500 (613)
+..+ ++...|++...+...+..|.++|++....+.-|
T Consensus 22 s~~~---la~~~~vs~~tv~~~l~~L~~~g~i~~~~~~g~ 58 (60)
T smart00345 22 SERE---LAAQLGVSRTTVREALSRLEAEGLVQRRPGSGT 58 (60)
T ss_pred CHHH---HHHHHCCCHHHHHHHHHHHHHCCCEEEecCCee
Confidence 4554 688889999999999999999999865544433
No 133
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=40.79 E-value=79 Score=26.14 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=38.0
Q ss_pred CCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCc---eEEEe
Q psy2640 456 SRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQ---LYQLM 503 (613)
Q Consensus 456 ~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~---~~~l~ 503 (613)
.+..++...+.+++...|+++..+...+..|..+|++.....+ .|.|.
T Consensus 17 ~g~~i~~~~Li~ll~~~Gv~e~avR~alsRl~~~G~L~~~r~Gr~~~Y~Lt 67 (70)
T PF07848_consen 17 RGGWIWVASLIRLLAAFGVSESAVRTALSRLVRRGWLESERRGRRSYYRLT 67 (70)
T ss_dssp TTS-EEHHHHHHHHCCTT--HHHHHHHHHHHHHTTSEEEECCCTEEEEEE-
T ss_pred CCCceeHHHHHHHHHHcCCChHHHHHHHHHHHHcCceeeeecCccceEeeC
Confidence 3456889999999999999999999999999999999987666 66654
No 134
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=40.15 E-value=2.6e+02 Score=28.58 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=17.1
Q ss_pred CCcceeecCCCCCCcchhhhH
Q psy2640 417 GDAHVLIVGDPGLGKSQMLHA 437 (613)
Q Consensus 417 g~idil~vgdpGtgKSq~l~~ 437 (613)
+..|+++.|.||+||+...+.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHH
Confidence 346899999999999998433
No 135
>PRK04132 replication factor C small subunit; Provisional
Probab=39.38 E-value=53 Score=39.86 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=37.8
Q ss_pred ceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceee
Q psy2640 123 GVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCS 202 (613)
Q Consensus 123 gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~ 202 (613)
-++.|||.|.|+. +.+.+|+..||+-
T Consensus 632 KVvIIDEaD~Lt~------------------------------------------~AQnALLk~lEep------------ 657 (846)
T PRK04132 632 KIIFLDEADALTQ------------------------------------------DAQQALRRTMEMF------------ 657 (846)
T ss_pred EEEEEECcccCCH------------------------------------------HHHHHHHHHhhCC------------
Confidence 4999999999998 4789999999972
Q ss_pred cCCcceeecccCCCCCCCCCCccchhhccccccccccc
Q psy2640 203 LPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRF 240 (613)
Q Consensus 203 l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRF 240 (613)
|..|-++.++|+. -++.+++.||.
T Consensus 658 -~~~~~FILi~N~~-------------~kIi~tIrSRC 681 (846)
T PRK04132 658 -SSNVRFILSCNYS-------------SKIIEPIQSRC 681 (846)
T ss_pred -CCCeEEEEEeCCh-------------hhCchHHhhhc
Confidence 2344556667764 14678899996
No 136
>PRK00625 shikimate kinase; Provisional
Probab=38.90 E-value=80 Score=30.57 Aligned_cols=15 Identities=27% Similarity=0.736 Sum_probs=13.3
Q ss_pred ceeecCCCCCCcchh
Q psy2640 420 HVLIVGDPGLGKSQM 434 (613)
Q Consensus 420 dil~vgdpGtgKSq~ 434 (613)
+++++|.||.|||..
T Consensus 2 ~I~LiG~pGsGKTT~ 16 (173)
T PRK00625 2 QIFLCGLPTVGKTSF 16 (173)
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999998
No 137
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=38.56 E-value=98 Score=23.45 Aligned_cols=35 Identities=17% Similarity=0.432 Sum_probs=28.5
Q ss_pred ccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEec
Q psy2640 458 SVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKK 495 (613)
Q Consensus 458 ~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~ 495 (613)
..++..+ ++...|++...+..++..|.+.|++...
T Consensus 17 ~~~t~~e---ia~~~gl~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 17 GPLTLSE---IARALGLPKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp SCEEHHH---HHHHHTS-HHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCHHH---HHHHHCcCHHHHHHHHHHHHHCcCeecC
Confidence 3467777 5888899999999999999999998764
No 138
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=38.29 E-value=1.7e+02 Score=22.32 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=27.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhCCcEEecCCceEE
Q psy2640 467 QLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQ 501 (613)
Q Consensus 467 ~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~ 501 (613)
++|...|++...+...+..|.++|++....+..|.
T Consensus 30 ~la~~~~is~~~v~~~l~~L~~~G~i~~~~~~~~~ 64 (66)
T cd07377 30 ELAEELGVSRTTVREALRELEAEGLVERRPGRGTF 64 (66)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCeEE
Confidence 36888899999999999999999998655443343
No 139
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=37.96 E-value=5.4e+02 Score=27.63 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=26.4
Q ss_pred cccHHHHH----HHHHhCCCC---HHHHHHHHHHHhhCCcEEe
Q psy2640 459 VFTVTELK----QLATSANIS---VDNFFTFLTSLNDQGFLLK 494 (613)
Q Consensus 459 ~~t~~el~----~~a~~~gi~---~~~~~~~i~~L~~~G~i~~ 494 (613)
.++.+++. .+++..|+. ...+...+..|...|++..
T Consensus 315 ~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 315 EVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred cccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEE
Confidence 45666653 356666774 4889999999999999874
No 140
>CHL00095 clpC Clp protease ATP binding subunit
Probab=36.58 E-value=4.4e+02 Score=32.04 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=27.6
Q ss_pred ceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHH
Q psy2640 207 TSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMA 264 (613)
Q Consensus 207 ~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~ 264 (613)
..+|+|++|. .+...+...+.+..||..| -...++...-..+-+.+..
T Consensus 308 l~~IgaTt~~--------ey~~~ie~D~aL~rRf~~I--~v~ep~~~e~~aILr~l~~ 355 (821)
T CHL00095 308 LQCIGATTLD--------EYRKHIEKDPALERRFQPV--YVGEPSVEETIEILFGLRS 355 (821)
T ss_pred cEEEEeCCHH--------HHHHHHhcCHHHHhcceEE--ecCCCCHHHHHHHHHHHHH
Confidence 4557777763 2223355678899999865 3344554444444444443
No 141
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=36.21 E-value=1.4e+02 Score=24.22 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=31.0
Q ss_pred ccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEec----CC-ceEEEe
Q psy2640 458 SVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKK----GK-QLYQLM 503 (613)
Q Consensus 458 ~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~----g~-~~~~l~ 503 (613)
..++..| +|+..|++.-.+...+..|..+|.+... |. +.|+|.
T Consensus 14 ~p~~T~e---iA~~~gls~~~aR~yL~~Le~eG~V~~~~~~rG~~~~W~l~ 61 (62)
T PF04703_consen 14 GPLKTRE---IADALGLSIYQARYYLEKLEKEGKVERSPVRRGKSTYWRLN 61 (62)
T ss_dssp S-EEHHH---HHHHHTS-HHHHHHHHHHHHHCTSEEEES-SSSSS-EEEES
T ss_pred CCCCHHH---HHHHhCCCHHHHHHHHHHHHHCCCEEEecCCCCcceeeeec
Confidence 3466666 6888899999999999999999998752 22 456654
No 142
>PRK08118 topology modulation protein; Reviewed
Probab=36.10 E-value=59 Score=31.10 Aligned_cols=14 Identities=36% Similarity=0.871 Sum_probs=12.3
Q ss_pred eeecCCCCCCcchh
Q psy2640 421 VLIVGDPGLGKSQM 434 (613)
Q Consensus 421 il~vgdpGtgKSq~ 434 (613)
++++|.||.|||.+
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 45789999999998
No 143
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.37 E-value=74 Score=36.35 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=12.8
Q ss_pred cCceeccccccCCCc
Q psy2640 121 DQGVCCIDEFDKMSA 135 (613)
Q Consensus 121 d~gv~ciDEfdkm~~ 135 (613)
..-|+.|||.+.|+.
T Consensus 119 ~~kV~iIDE~~~ls~ 133 (509)
T PRK14958 119 RFKVYLIDEVHMLSG 133 (509)
T ss_pred CcEEEEEEChHhcCH
Confidence 345899999999988
No 144
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=33.62 E-value=43 Score=37.73 Aligned_cols=39 Identities=36% Similarity=0.579 Sum_probs=32.9
Q ss_pred cCCccchhhHHHHHHHHhhhCCcccCCCCCCCcceeecCCCCCCcchhh
Q psy2640 387 LCPSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQML 435 (613)
Q Consensus 387 d~~~I~~~~~~k~gl~l~l~GG~~~~~~~rg~idil~vgdpGtgKSq~l 435 (613)
|.-+|.|.+..|.++-.+-.|| -|+|.+|-||+|||-..
T Consensus 177 D~~DV~GQ~~AKrAleiAAAGg----------HnLl~~GpPGtGKTmla 215 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAAAGG----------HNLLLVGPPGTGKTMLA 215 (490)
T ss_pred chhhhcCcHHHHHHHHHHHhcC----------CcEEEecCCCCchHHhh
Confidence 5678899999999988877773 58889999999999874
No 145
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=33.58 E-value=28 Score=38.44 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=39.9
Q ss_pred ccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccc
Q psy2640 120 ADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASV 199 (613)
Q Consensus 120 ad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi 199 (613)
+..-|+.|||++.|+. ....+|+..||+-.
T Consensus 116 ~~~kViiIDead~m~~------------------------------------------~aanaLLk~LEep~-------- 145 (394)
T PRK07940 116 GRWRIVVIEDADRLTE------------------------------------------RAANALLKAVEEPP-------- 145 (394)
T ss_pred CCcEEEEEechhhcCH------------------------------------------HHHHHHHHHhhcCC--------
Confidence 4556899999999998 35678999998721
Q ss_pred eeecCCcceeecccCCCCCCCCCCccchhhccccccccccc
Q psy2640 200 VCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRF 240 (613)
Q Consensus 200 ~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRF 240 (613)
+...+|+++.||- .+.+++.||.
T Consensus 146 ----~~~~fIL~a~~~~--------------~llpTIrSRc 168 (394)
T PRK07940 146 ----PRTVWLLCAPSPE--------------DVLPTIRSRC 168 (394)
T ss_pred ----CCCeEEEEECChH--------------HChHHHHhhC
Confidence 3345788888863 4778899998
No 146
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=33.49 E-value=1.5e+02 Score=31.11 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.8
Q ss_pred ccCceeccccccCCCc
Q psy2640 120 ADQGVCCIDEFDKMSA 135 (613)
Q Consensus 120 ad~gv~ciDEfdkm~~ 135 (613)
++..+++|||++.++.
T Consensus 124 ~~~~vlilDe~~~l~~ 139 (337)
T PRK12402 124 ADYKTILLDNAEALRE 139 (337)
T ss_pred CCCcEEEEeCcccCCH
Confidence 5678999999999976
No 147
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=33.36 E-value=74 Score=33.25 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=13.2
Q ss_pred ccCceeccccccCCCc
Q psy2640 120 ADQGVCCIDEFDKMSA 135 (613)
Q Consensus 120 ad~gv~ciDEfdkm~~ 135 (613)
++..++.|||++.++.
T Consensus 99 ~~~~vliiDe~d~l~~ 114 (316)
T PHA02544 99 GGGKVIIIDEFDRLGL 114 (316)
T ss_pred CCCeEEEEECcccccC
Confidence 5678999999999944
No 148
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=33.31 E-value=73 Score=34.53 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=30.7
Q ss_pred CCCcceeecCCCCCCcchhhhHHHHHHHHHHHHHHHh--------h-hcCCccccHHHHHHHHHhCCCCHH
Q psy2640 416 RGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKA--------E-VQSRSVFTVTELKQLATSANISVD 477 (613)
Q Consensus 416 rg~idil~vgdpGtgKSq~l~~~~~~~~~~~~l~~~~--------~-~~~~~~~t~~el~~~a~~~gi~~~ 477 (613)
+|.+-. +.|.||+||||+... .. +....+.. . ....+.|+.+.+.+.+.+.|++.+
T Consensus 125 ~G~ItE-I~G~~GsGKTql~lq----la-v~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~ 189 (344)
T PLN03187 125 TRCITE-AFGEFRSGKTQLAHT----LC-VTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDAD 189 (344)
T ss_pred CCeEEE-EecCCCCChhHHHHH----HH-HHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChh
Confidence 455554 789999999998211 11 11111110 0 012234667777777777676543
No 149
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=33.25 E-value=68 Score=35.54 Aligned_cols=45 Identities=40% Similarity=0.481 Sum_probs=33.3
Q ss_pred HHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCC
Q psy2640 178 AQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDN 249 (613)
Q Consensus 178 ~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~ 249 (613)
..+++|+-.||.++|.+--|- +-||. +.+.++|+||- .||.+.-=
T Consensus 119 ~QQD~lLp~vE~G~iilIGAT-------------TENPs-------------F~ln~ALlSR~-~vf~lk~L 163 (436)
T COG2256 119 AQQDALLPHVENGTIILIGAT-------------TENPS-------------FELNPALLSRA-RVFELKPL 163 (436)
T ss_pred hhhhhhhhhhcCCeEEEEecc-------------CCCCC-------------eeecHHHhhhh-heeeeecC
Confidence 488999999999999875221 34664 35778999998 67777533
No 150
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=32.29 E-value=2.6e+02 Score=22.20 Aligned_cols=50 Identities=12% Similarity=0.261 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecC
Q psy2640 442 KKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKG 496 (613)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g 496 (613)
..++..|-.+.. .+..++..+ +|...|++..-+.+.+.+|.++|++....
T Consensus 7 e~YL~~Iy~l~~--~~~~v~~~~---iA~~L~vs~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 7 EDYLKAIYELSE--EGGPVRTKD---IAERLGVSPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp HHHHHHHHHHHH--CTSSBBHHH---HHHHHTS-HHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHc--CCCCccHHH---HHHHHCCChHHHHHHHHHHHHCCCEEecC
Confidence 345555555443 345567766 68889999999999999999999987543
No 151
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=32.19 E-value=57 Score=39.14 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=12.7
Q ss_pred cCceeccccccCCCc
Q psy2640 121 DQGVCCIDEFDKMSA 135 (613)
Q Consensus 121 d~gv~ciDEfdkm~~ 135 (613)
..-|+.|||.+.|+.
T Consensus 119 r~KVIIIDEah~LT~ 133 (830)
T PRK07003 119 RFKVYMIDEVHMLTN 133 (830)
T ss_pred CceEEEEeChhhCCH
Confidence 456889999999987
No 152
>PF14795 Leucyl-specific: Leucine-tRNA synthetase-specific domain; PDB: 1OBC_A 2BTE_A 2V0G_A 2BYT_A 1OBH_A 1H3N_A 2V0C_A.
Probab=32.18 E-value=10 Score=29.38 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=15.6
Q ss_pred HHHHH-hhcccccccc-cChhHHH
Q psy2640 564 YQLMS-ARAKCELREE-ASKQDAQ 585 (613)
Q Consensus 564 iRLse-ArAkl~lre~-vt~~Da~ 585 (613)
|||+| +|+||+|-+. .|.+||.
T Consensus 14 vrL~e~~R~rLel~~~~Ls~ee~~ 37 (56)
T PF14795_consen 14 VRLPEPTRIRLELEEGELSLEEVK 37 (56)
T ss_dssp EE--HHHHHHHT-S-SEEEHHHHH
T ss_pred EEcCcchhheeecccccccHHHHH
Confidence 57777 8999999988 8999986
No 153
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=31.90 E-value=1.7e+02 Score=24.27 Aligned_cols=36 Identities=25% Similarity=0.504 Sum_probs=28.8
Q ss_pred HHHhCCCCHHHHHHHHHHHhhCCcEEecCCceEEEec
Q psy2640 468 LATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMS 504 (613)
Q Consensus 468 ~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l~~ 504 (613)
++...+++...+...++.|.+.|.+ ..+++.|.+..
T Consensus 25 i~~~~~L~~~~~~~yL~~L~~~gLI-~~~~~~Y~lTe 60 (77)
T PF14947_consen 25 IMYKANLNYSTLKKYLKELEEKGLI-KKKDGKYRLTE 60 (77)
T ss_dssp HHTTST--HHHHHHHHHHHHHTTSE-EEETTEEEE-H
T ss_pred HHHHhCcCHHHHHHHHHHHHHCcCe-eCCCCEEEECc
Confidence 6788899999999999999999999 45778898763
No 154
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.75 E-value=31 Score=40.60 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=12.3
Q ss_pred CceeccccccCCCc
Q psy2640 122 QGVCCIDEFDKMSA 135 (613)
Q Consensus 122 ~gv~ciDEfdkm~~ 135 (613)
.-|+.|||++.|+.
T Consensus 125 ~KViIIDEah~Ls~ 138 (700)
T PRK12323 125 FKVYMIDEVHMLTN 138 (700)
T ss_pred ceEEEEEChHhcCH
Confidence 35899999999998
No 155
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=30.77 E-value=98 Score=35.46 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=26.4
Q ss_pred HHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccc
Q psy2640 179 QHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRF 240 (613)
Q Consensus 179 ~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRF 240 (613)
.+.||+-.+|.-- +.--||+|+.+|- ++|.+++||-
T Consensus 135 afNALLKTLEEPP------------~hV~FIlATTe~~--------------Kip~TIlSRc 170 (515)
T COG2812 135 AFNALLKTLEEPP------------SHVKFILATTEPQ--------------KIPNTILSRC 170 (515)
T ss_pred HHHHHhcccccCc------------cCeEEEEecCCcC--------------cCchhhhhcc
Confidence 5778887777643 2234899999985 5899999984
No 156
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=30.65 E-value=70 Score=32.50 Aligned_cols=47 Identities=23% Similarity=0.399 Sum_probs=28.9
Q ss_pred CCCcceeecCCCCCCcchhhhHHHHHHHHHHHHHHHhhhcCCccccHHHHHHHHH
Q psy2640 416 RGDAHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLAT 470 (613)
Q Consensus 416 rg~idil~vgdpGtgKSq~l~~~~~~~~~~~~l~~~~~~~~~~~~t~~el~~~a~ 470 (613)
.|.+=++.||-|+.|||-.- .++.+++.-+.- ..+.|.+++.+....
T Consensus 10 ~~kl~ivmVGLPArGKs~ia---~kl~ryL~w~g~-----~~~vFn~g~yRR~~~ 56 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIA---RKLCRYLNWLGV-----KTKVFNVGDYRRKLS 56 (222)
T ss_dssp ---EEEEEESSTTSSHHHHH---HHHHHHHHHTT-------EEEEEHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHH---HHHHHHHhhcCC-----Ccceeecccceeccc
Confidence 35666778999999999982 356677664332 234677777754433
No 157
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.64 E-value=1.1e+02 Score=35.93 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=14.1
Q ss_pred cccCceeccccccCCCc
Q psy2640 119 LADQGVCCIDEFDKMSA 135 (613)
Q Consensus 119 Lad~gv~ciDEfdkm~~ 135 (613)
.+...++.|||++.|+.
T Consensus 117 ~g~~kVIIIDEad~Lt~ 133 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTR 133 (624)
T ss_pred cCCceEEEEEChHhCCH
Confidence 34567899999999987
No 158
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=30.46 E-value=2.2e+02 Score=32.62 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.2
Q ss_pred cccCceeccccccCCCc
Q psy2640 119 LADQGVCCIDEFDKMSA 135 (613)
Q Consensus 119 Lad~gv~ciDEfdkm~~ 135 (613)
.++..++.|||.+.++.
T Consensus 126 ~~~~KVvIIDEa~~Ls~ 142 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSK 142 (507)
T ss_pred cCCcEEEEEEChhhcCH
Confidence 45778999999999887
No 159
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=30.32 E-value=1e+02 Score=35.99 Aligned_cols=17 Identities=29% Similarity=0.208 Sum_probs=14.7
Q ss_pred cccCceeccccccCCCc
Q psy2640 119 LADQGVCCIDEFDKMSA 135 (613)
Q Consensus 119 Lad~gv~ciDEfdkm~~ 135 (613)
.++.+|+.|||.+.|+.
T Consensus 117 ~~~~KVIIIDEad~Lt~ 133 (605)
T PRK05896 117 TFKYKVYIIDEAHMLST 133 (605)
T ss_pred hCCcEEEEEechHhCCH
Confidence 45788999999999987
No 160
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=30.24 E-value=1.1e+02 Score=30.45 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=32.3
Q ss_pred ccCCchhhhhHHHHhhhhhc-----ceEEEecccccccCceEEEEeeCCCCeeecCceeecccCceeccccccCCCc
Q psy2640 64 LSNEPQHTINCLGLAMHHYI-----ISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSA 135 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~~-----r~~~~~g~~~s~~gLta~~~~~~~g~~~le~GalvLad~gv~ciDEfdkm~~ 135 (613)
+.|.|+.++.-|..|++... ..+|++....... . ..+...++++|||++.++.
T Consensus 47 l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~-------------~------~~~~~~~~liiDdi~~l~~ 104 (227)
T PRK08903 47 LWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA-------------F------DFDPEAELYAVDDVERLDD 104 (227)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH-------------H------hhcccCCEEEEeChhhcCc
Confidence 67888999988877765432 3344433221110 0 1234567899999998876
No 161
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=30.23 E-value=40 Score=33.49 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=44.4
Q ss_pred ecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecc
Q psy2640 118 VLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKA 197 (613)
Q Consensus 118 vLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~ka 197 (613)
.+...-++++|||+.++. ++..+|...+-..++++.++
T Consensus 92 ~l~~~~iveldEl~~~~k------------------------------------------~~~~~lK~~iT~~~~~~R~p 129 (198)
T PF05272_consen 92 QLQGKWIVELDELDGLSK------------------------------------------KDVEALKSFITRRTDTYRPP 129 (198)
T ss_pred HHHHhHheeHHHHhhcch------------------------------------------hhHHHHHHHhcccceeeecC
Confidence 455567789999999986 35677777777888887643
Q ss_pred --cceeecCCcceeecccCCC
Q psy2640 198 --SVVCSLPARTSVIAAANPV 216 (613)
Q Consensus 198 --gi~~~l~ar~svlAaaNP~ 216 (613)
.....+|-+|++++++|..
T Consensus 130 Y~~~~~~~~R~~~figTtN~~ 150 (198)
T PF05272_consen 130 YGRDPEEFPRRAVFIGTTNDD 150 (198)
T ss_pred CcCcceeeceeEEEEeccCCc
Confidence 3568899999999999974
No 162
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=30.14 E-value=75 Score=37.45 Aligned_cols=56 Identities=32% Similarity=0.481 Sum_probs=40.5
Q ss_pred CceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEeccccee
Q psy2640 122 QGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVC 201 (613)
Q Consensus 122 ~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~ 201 (613)
.-|+.|||.+.|+. ....+|+-.||.-
T Consensus 120 ~KV~IIDEah~Ls~------------------------------------------~a~NALLKtLEEP----------- 146 (647)
T PRK07994 120 FKVYLIDEVHMLSR------------------------------------------HSFNALLKTLEEP----------- 146 (647)
T ss_pred CEEEEEechHhCCH------------------------------------------HHHHHHHHHHHcC-----------
Confidence 34899999999998 4688999999972
Q ss_pred ecCCcc-eeecccCCCCCCCCCCccchhhccccccccccccEEEEec
Q psy2640 202 SLPART-SVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILL 247 (613)
Q Consensus 202 ~l~ar~-svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~ 247 (613)
|.++ +|+++.+|- +++++++||. +.|-+.
T Consensus 147 --p~~v~FIL~Tt~~~--------------kLl~TI~SRC-~~~~f~ 176 (647)
T PRK07994 147 --PEHVKFLLATTDPQ--------------KLPVTILSRC-LQFHLK 176 (647)
T ss_pred --CCCeEEEEecCCcc--------------ccchHHHhhh-eEeeCC
Confidence 3333 666666652 4888899996 444443
No 163
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=29.66 E-value=1.5e+02 Score=27.18 Aligned_cols=53 Identities=23% Similarity=0.306 Sum_probs=39.8
Q ss_pred CCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEec-C-CceEEEechhhHHHH
Q psy2640 456 SRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKK-G-KQLYQLMSAKKFISV 511 (613)
Q Consensus 456 ~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~-g-~~~~~l~~~~~~~~i 511 (613)
++..++..+ ++.+.+++...+..++..|.+.|++... | +|-|.+...-+.+++
T Consensus 22 ~~~~~s~~~---ia~~~~ip~~~l~kil~~L~~~glv~s~~G~~Ggy~l~~~~~~Itl 76 (135)
T TIGR02010 22 ETGPVTLAD---ISERQGISLSYLEQLFAKLRKAGLVKSVRGPGGGYQLGRPAEDISV 76 (135)
T ss_pred CCCcCcHHH---HHHHHCcCHHHHHHHHHHHHHCCceEEEeCCCCCEeccCCHHHCcH
Confidence 334567776 6888999999999999999999988753 3 356888765555444
No 164
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=29.52 E-value=86 Score=37.47 Aligned_cols=64 Identities=14% Similarity=0.193 Sum_probs=33.0
Q ss_pred ccCCchhhhhHHHHhhhhhcceEEEecccccccCceEEEEeeCCCCeeecCce--e-ecccCceeccccccCCCc
Q psy2640 64 LSNEPQHTINCLGLAMHHYIISVYVCGNTSTTSGLTVTLSREGGGDFALEAGA--L-VLADQGVCCIDEFDKMSA 135 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~~r~~~~~g~~~s~~gLta~~~~~~~g~~~le~Ga--l-vLad~gv~ciDEfdkm~~ 135 (613)
+-|.|+.++..|..+++.....-|+.-+.+ ..|+ ++- .+ .++... + ....+++++|||++.++.
T Consensus 57 L~GPpGtGKTTLA~aIA~~~~~~f~~lna~-~~~i-----~di-r~-~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 57 LYGPPGVGKTTLARIIANHTRAHFSSLNAV-LAGV-----KDL-RA-EVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred EECCCCCCHHHHHHHHHHHhcCcceeehhh-hhhh-----HHH-HH-HHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 578899999888877765443322221111 1111 000 00 001000 0 112457899999999987
No 165
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=28.85 E-value=2.1e+02 Score=21.03 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcE
Q psy2640 459 VFTVTELKQLATSANISVDNFFTFLTSLNDQGFL 492 (613)
Q Consensus 459 ~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i 492 (613)
.++..+ +|...|++...+...+..|.++|++
T Consensus 17 ~~t~~e---la~~~~is~~tv~~~l~~L~~~g~I 47 (48)
T PF13412_consen 17 RITQKE---LAEKLGISRSTVNRYLKKLEEKGLI 47 (48)
T ss_dssp TS-HHH---HHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred CCCHHH---HHHHhCCCHHHHHHHHHHHHHCcCc
Confidence 367766 6888899999999999999999986
No 166
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=28.72 E-value=1.6e+02 Score=26.57 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=39.4
Q ss_pred CccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEec-C-CceEEEechhhHHHH
Q psy2640 457 RSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKK-G-KQLYQLMSAKKFISV 511 (613)
Q Consensus 457 ~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~-g-~~~~~l~~~~~~~~i 511 (613)
+..++..+ ++...+++...+..++..|...|++... | ++-|.+...-+.+++
T Consensus 23 ~~~~s~~e---ia~~~~i~~~~v~~il~~L~~~gli~~~~g~~ggy~l~~~~~~itl 76 (132)
T TIGR00738 23 EGPVSVKE---IAERQGISRSYLEKILRTLRRAGLVESVRGPGGGYRLARPPEEITV 76 (132)
T ss_pred CCcCcHHH---HHHHHCcCHHHHHHHHHHHHHCCcEEeccCCCCCccCCCCHHHCCH
Confidence 34667776 6888899999999999999999998764 3 356888755554433
No 167
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=27.80 E-value=1e+02 Score=30.11 Aligned_cols=46 Identities=20% Similarity=0.410 Sum_probs=26.4
Q ss_pred ecCCCCCCcchhhhHHHHHHHHHHHHHHHhhhcCCccccHHHH-HHHHHhCCCCHHHHHH
Q psy2640 423 IVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTEL-KQLATSANISVDNFFT 481 (613)
Q Consensus 423 ~vgdpGtgKSq~l~~~~~~~~~~~~l~~~~~~~~~~~~t~~el-~~~a~~~gi~~~~~~~ 481 (613)
+-|-||.|||.. ++ .+.+. .+=..++.+.+ +++|.+.|++..+|..
T Consensus 5 IsG~pGsG~TTv----a~--~lAe~-------~gl~~vsaG~iFR~~A~e~gmsl~ef~~ 51 (179)
T COG1102 5 ISGLPGSGKTTV----AR--ELAEH-------LGLKLVSAGTIFREMARERGMSLEEFSR 51 (179)
T ss_pred eccCCCCChhHH----HH--HHHHH-------hCCceeeccHHHHHHHHHcCCCHHHHHH
Confidence 347899999988 21 11111 12122333333 5678888888877743
No 168
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=26.57 E-value=43 Score=29.28 Aligned_cols=19 Identities=37% Similarity=0.754 Sum_probs=15.5
Q ss_pred cceeecCCCCCCcchhhhH
Q psy2640 419 AHVLIVGDPGLGKSQMLHA 437 (613)
Q Consensus 419 idil~vgdpGtgKSq~l~~ 437 (613)
.++++.|.||+|||.+++.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~ 38 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARA 38 (151)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4677899999999998543
No 169
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=26.55 E-value=42 Score=31.99 Aligned_cols=24 Identities=0% Similarity=-0.086 Sum_probs=15.7
Q ss_pred hhccchhhhHHHHhhhhhcccchh
Q psy2640 35 EERRCYLVDIKVLMNDQIFNDQWK 58 (613)
Q Consensus 35 ~~~~~~~~dvK~~i~~qlfgg~~k 58 (613)
.|.+.|..++-..++-.+++....
T Consensus 26 G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 26 GPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp CSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred CCCCCCHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777765543
No 170
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=26.54 E-value=1.7e+02 Score=33.77 Aligned_cols=17 Identities=35% Similarity=0.317 Sum_probs=14.1
Q ss_pred cccCceeccccccCCCc
Q psy2640 119 LADQGVCCIDEFDKMSA 135 (613)
Q Consensus 119 Lad~gv~ciDEfdkm~~ 135 (613)
.++.-|+.|||.+.|+.
T Consensus 117 ~~~~kViIIDE~~~Lt~ 133 (559)
T PRK05563 117 EAKYKVYIIDEVHMLST 133 (559)
T ss_pred cCCeEEEEEECcccCCH
Confidence 45677899999999987
No 171
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=26.39 E-value=1e+02 Score=32.92 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=14.5
Q ss_pred CCCcceeecCCCCCCcchh
Q psy2640 416 RGDAHVLIVGDPGLGKSQM 434 (613)
Q Consensus 416 rg~idil~vgdpGtgKSq~ 434 (613)
+|.+-- +.|.||+||||+
T Consensus 95 ~G~ite-I~G~~GsGKTql 112 (313)
T TIGR02238 95 SMSITE-VFGEFRCGKTQL 112 (313)
T ss_pred CCeEEE-EECCCCCCcCHH
Confidence 355554 789999999998
No 172
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=26.28 E-value=38 Score=29.80 Aligned_cols=15 Identities=40% Similarity=0.880 Sum_probs=12.7
Q ss_pred eeecCCCCCCcchhh
Q psy2640 421 VLIVGDPGLGKSQML 435 (613)
Q Consensus 421 il~vgdpGtgKSq~l 435 (613)
+|+.|.||+|||.+.
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 367899999999984
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=26.13 E-value=37 Score=29.29 Aligned_cols=17 Identities=47% Similarity=0.862 Sum_probs=14.4
Q ss_pred ceeecCCCCCCcchhhh
Q psy2640 420 HVLIVGDPGLGKSQMLH 436 (613)
Q Consensus 420 dil~vgdpGtgKSq~l~ 436 (613)
++++.|.||+|||..++
T Consensus 4 ~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 4 VILIVGPPGSGKTTLAR 20 (148)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 56789999999999853
No 174
>PTZ00035 Rad51 protein; Provisional
Probab=25.98 E-value=1.3e+02 Score=32.49 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=15.2
Q ss_pred CCCcceeecCCCCCCcchhh
Q psy2640 416 RGDAHVLIVGDPGLGKSQML 435 (613)
Q Consensus 416 rg~idil~vgdpGtgKSq~l 435 (613)
+|.+-. +.|.||+|||++.
T Consensus 117 ~G~ite-I~G~~GsGKT~l~ 135 (337)
T PTZ00035 117 TGSITE-LFGEFRTGKTQLC 135 (337)
T ss_pred CCeEEE-EECCCCCchhHHH
Confidence 466655 7899999999993
No 175
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=25.88 E-value=83 Score=41.27 Aligned_cols=90 Identities=21% Similarity=0.345 Sum_probs=58.8
Q ss_pred CCCeeecCcee--ecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHH
Q psy2640 107 GGDFALEAGAL--VLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALL 184 (613)
Q Consensus 107 ~g~~~le~Gal--vLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 184 (613)
+|+|...-.++ -+-|||-+.+||++-.+.+ ...-|.
T Consensus 1595 ~Gef~w~dapfL~amr~G~WVlLDEiNLaSQS------------------------------------------VlEGLN 1632 (4600)
T COG5271 1595 GGEFRWMDAPFLHAMRDGGWVLLDEINLASQS------------------------------------------VLEGLN 1632 (4600)
T ss_pred CceeEecccHHHHHhhcCCEEEeehhhhhHHH------------------------------------------HHHHHH
Confidence 56655443333 5679999999999877761 222222
Q ss_pred hhhcC-CeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEE
Q psy2640 185 EAMEQ-QSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFI 245 (613)
Q Consensus 185 eameq-q~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~ 245 (613)
-.+.+ +.--|+--.++..+.-.+-|.||.||.... .+--.||.+.+.||-.+++
T Consensus 1633 acLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qg-------gGRKgLPkSF~nRFsvV~~ 1687 (4600)
T COG5271 1633 ACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQG-------GGRKGLPKSFLNRFSVVKM 1687 (4600)
T ss_pred HHHhhccccccccccceeeccCCeeeeeecCchhcC-------CCcccCCHHHhhhhheEEe
Confidence 22222 233355555677888889999999998332 1223699999999987775
No 176
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=25.76 E-value=1.2e+02 Score=24.10 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCc
Q psy2640 459 VFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQ 498 (613)
Q Consensus 459 ~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~ 498 (613)
.++..+ ++...|++...+...++.|.+.|++...++.
T Consensus 22 ~~t~~e---Ia~~l~i~~~~v~~~L~~L~~~GlV~~~~~~ 58 (68)
T PF01978_consen 22 PATAEE---IAEELGISRSTVYRALKSLEEKGLVEREEGR 58 (68)
T ss_dssp HEEHHH---HHHHHTSSHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred CCCHHH---HHHHHCcCHHHHHHHHHHHHHCCCEEEEcCc
Confidence 467776 6888899999999999999999999877544
No 177
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.58 E-value=1.6e+02 Score=34.42 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=14.5
Q ss_pred cccCceeccccccCCCc
Q psy2640 119 LADQGVCCIDEFDKMSA 135 (613)
Q Consensus 119 Lad~gv~ciDEfdkm~~ 135 (613)
.++.-|+.|||.+.|+.
T Consensus 116 ~~~~KVvIIDEah~Lt~ 132 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTT 132 (584)
T ss_pred cCCceEEEEECCCcCCH
Confidence 36778999999999987
No 178
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=25.35 E-value=1.2e+02 Score=33.56 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=22.5
Q ss_pred cCCcceeecccCCCCCCCCCCccchhhccccccccc--cccEEEE
Q psy2640 203 LPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLS--RFDLVFI 245 (613)
Q Consensus 203 l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~lls--RFDLi~~ 245 (613)
-..+..||+++|=+ + .|+++|+- |||-.+.
T Consensus 265 ~~~~V~VIaTTNrp----d---------~LDpALlRpGRfDk~i~ 296 (413)
T PLN00020 265 EIPRVPIIVTGNDF----S---------TLYAPLIRDGRMEKFYW 296 (413)
T ss_pred cCCCceEEEeCCCc----c---------cCCHhHcCCCCCCceeC
Confidence 35678899999843 2 38888998 9998654
No 179
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=25.33 E-value=5.1e+02 Score=28.31 Aligned_cols=38 Identities=16% Similarity=0.024 Sum_probs=26.0
Q ss_pred HHHHHHHHhhcccccccccChhHHHHHHHHhhhcchhh
Q psy2640 561 KQLYQLMSARAKCELREEASKQDAQDVIDIMKWSLIDT 598 (613)
Q Consensus 561 esLiRLseArAkl~lre~vt~~Da~~vv~im~~s~~~~ 598 (613)
+.|++-+--.|=-+-+..+|.+|..+|+..++.+--+.
T Consensus 342 ~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 342 KAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccccc
Confidence 44655554333333467899999999999998776553
No 180
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=25.01 E-value=35 Score=36.21 Aligned_cols=58 Identities=28% Similarity=0.337 Sum_probs=40.6
Q ss_pred HhhhhhcceEEEecccccccCceEE-----EEeeC-CCCeeecCceeecccCceeccccccCCCc
Q psy2640 77 LAMHHYIISVYVCGNTSTTSGLTVT-----LSREG-GGDFALEAGALVLADQGVCCIDEFDKMSA 135 (613)
Q Consensus 77 la~~~~~r~~~~~g~~~s~~gLta~-----~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~ 135 (613)
.|-||.. +-||.-++.|--|=||. -+|.. ||.-.-.+|-|--||||.+++||+..+..
T Consensus 233 ~arhq~s-g~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfldeigelga 296 (531)
T COG4650 233 QARHQFS-GAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDEIGELGA 296 (531)
T ss_pred HHHHhcC-CceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEehHhhhhcCc
Confidence 4556643 44555555555554443 23444 77777789999999999999999999987
No 181
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=24.98 E-value=98 Score=34.92 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=30.1
Q ss_pred eeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecC
Q psy2640 200 VCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLD 248 (613)
Q Consensus 200 ~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d 248 (613)
...+|..+.|+|+.|.. |+ ++. .+..+|.-||..|-+..+
T Consensus 319 ~f~iP~Nl~IIgTMNt~----Dr--s~~---~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 319 RFYVPENVYIIGLMNTA----DR--SLA---VVDYALRRRFSFIDIEPG 358 (459)
T ss_pred cccCCCCeEEEEecCcc----cc--chh---hccHHHHhhhheEEecCC
Confidence 35789999999999985 43 222 489999999987666554
No 182
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.94 E-value=1.8e+02 Score=33.25 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=13.8
Q ss_pred cccCceeccccccCCCc
Q psy2640 119 LADQGVCCIDEFDKMSA 135 (613)
Q Consensus 119 Lad~gv~ciDEfdkm~~ 135 (613)
.+..-++.|||.+.|+.
T Consensus 114 ~~~~KVvIIDEah~Ls~ 130 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSN 130 (491)
T ss_pred cCCceEEEEeChHhCCH
Confidence 35667899999999987
No 183
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=24.82 E-value=1.2e+02 Score=36.59 Aligned_cols=107 Identities=23% Similarity=0.230 Sum_probs=57.2
Q ss_pred CcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhh-hhhccccCCccchhhHHHHHHHHhhhC
Q psy2640 329 PELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLF-KLLVNSLCPSIFGHEMVKAGLLLALFG 407 (613)
Q Consensus 329 P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~-~~v~~sd~~~I~~~~~~k~gl~l~l~G 407 (613)
-.+++++.+.+..-.-++++.........++...|+.+..+-.......++. ..+.+..-.+++|...+|.-+.--+..
T Consensus 259 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~ 338 (775)
T TIGR00763 259 LKLPEEVKKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAV 338 (775)
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHH
Confidence 3588999988888777787755544444445455665554432210111110 011111224577877777655321110
Q ss_pred CcccCCCCCCCcceeecCCCCCCcchhhhH
Q psy2640 408 GCHSTNGSRGDAHVLIVGDPGLGKSQMLHA 437 (613)
Q Consensus 408 G~~~~~~~rg~idil~vgdpGtgKSq~l~~ 437 (613)
. ......+|. .+|.+|.||+||+...++
T Consensus 339 ~-~~~~~~~~~-~lll~GppG~GKT~lAk~ 366 (775)
T TIGR00763 339 Q-KLRGKMKGP-ILCLVGPPGVGKTSLGKS 366 (775)
T ss_pred H-HhhcCCCCc-eEEEECCCCCCHHHHHHH
Confidence 0 000112333 688999999999998543
No 184
>PF13730 HTH_36: Helix-turn-helix domain
Probab=24.66 E-value=1.8e+02 Score=21.94 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=23.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhCCcE
Q psy2640 467 QLATSANISVDNFFTFLTSLNDQGFL 492 (613)
Q Consensus 467 ~~a~~~gi~~~~~~~~i~~L~~~G~i 492 (613)
.+|+..|++...+...+..|.+.|++
T Consensus 30 ~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 30 TLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 36888899999999999999999975
No 185
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=24.49 E-value=1.7e+02 Score=35.26 Aligned_cols=67 Identities=15% Similarity=0.281 Sum_probs=40.7
Q ss_pred HHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCC---------CCCCccchhhc------cccccccccccE
Q psy2640 178 AQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGH---------YNRAKTVAENL------RMGQALLSRFDL 242 (613)
Q Consensus 178 ~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~---------~~~~~~~~e~i------~l~~~llsRFDL 242 (613)
+....|++.|++|..+=.+.-.+ . =-.|-|+.++|-=... +.......+.+ .++|.+|.|+|-
T Consensus 608 dV~nilLQVlDdGrLTD~~Gr~V-d-FrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~ 685 (786)
T COG0542 608 DVFNLLLQVLDDGRLTDGQGRTV-D-FRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDE 685 (786)
T ss_pred HHHHHHHHHhcCCeeecCCCCEE-e-cceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhccc
Confidence 56789999999999998765422 2 2345677777732111 01111122322 489999999996
Q ss_pred EEEe
Q psy2640 243 VFIL 246 (613)
Q Consensus 243 i~~l 246 (613)
|++.
T Consensus 686 II~F 689 (786)
T COG0542 686 IIPF 689 (786)
T ss_pred EEec
Confidence 5443
No 186
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=24.42 E-value=1.2e+02 Score=24.55 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=28.7
Q ss_pred CccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecC
Q psy2640 457 RSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKG 496 (613)
Q Consensus 457 ~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g 496 (613)
++.++..+ +|.+.+++.+.++.+|+.|...|.+-+..
T Consensus 12 ~~~~S~~e---La~~~~~s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 12 RGRVSLAE---LAREFGISPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp S-SEEHHH---HHHHTT--HHHHHHHHHHHHCCTSCEEEE
T ss_pred cCCcCHHH---HHHHHCcCHHHHHHHHHHHHHCCcEEEec
Confidence 34577777 68899999999999999999999887544
No 187
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=24.31 E-value=5.2e+02 Score=29.04 Aligned_cols=72 Identities=15% Similarity=0.299 Sum_probs=35.7
Q ss_pred eeecCCCCCCcchhhhHHHHHHHHHHHHHHHhhhcCCc--cccHHHHH-HHHHhCCCCHHHHHHHHHHHhhCCcEEecCC
Q psy2640 421 VLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRS--VFTVTELK-QLATSANISVDNFFTFLTSLNDQGFLLKKGK 497 (613)
Q Consensus 421 il~vgdpGtgKSq~l~~~~~~~~~~~~l~~~~~~~~~~--~~t~~el~-~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~ 497 (613)
+++.|.+|+|||.++++.. ..+... ..+.. .++.+++. ++....+-....++++.+.+.+-.+++...-
T Consensus 144 l~i~G~~G~GKTHLl~Ai~------~~l~~~--~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDi 215 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAK------NYIESN--FSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDV 215 (450)
T ss_pred eEEECCCCCcHHHHHHHHH------HHHHHh--CCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEecc
Confidence 5578999999999965532 111111 00111 23444432 2222211111345566666766666666554
Q ss_pred ceE
Q psy2640 498 QLY 500 (613)
Q Consensus 498 ~~~ 500 (613)
+..
T Consensus 216 q~l 218 (450)
T PRK14087 216 QFL 218 (450)
T ss_pred ccc
Confidence 443
No 188
>KOG2545|consensus
Probab=24.09 E-value=1.7e+02 Score=32.74 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC
Q psy2640 312 APLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC 388 (613)
Q Consensus 312 ~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~ 388 (613)
....|.|+..+|.. .-.+++|..+++++-|+.||+.+.. ....+|-.++-+|+-. ++-..+.++..++-
T Consensus 460 l~q~rcyltt~r~l--~~nIsee~t~~iq~dfV~mRq~n~~-----snaddLs~lLv~sRll-s~S~G~ttlsre~w 528 (543)
T KOG2545|consen 460 LLQFRCYLTTMRNL--RANISEEMTDYIQSDFVSMRQYNKE-----SNADDLSLLLVCSRLL-SKSFGRTTLSREDW 528 (543)
T ss_pred HHHHHHHHHHHHhh--ccCccHHHHHHHHHHHHHHHhhCcc-----cchhHHHHHHHHHHHH-HHhhccchhhHHHH
Confidence 45578888889873 5689999999999999999986543 2356777777777666 66667776666554
No 189
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=23.72 E-value=1.3e+02 Score=24.18 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHHhhCCcEEecCCceEEE
Q psy2640 472 ANISVDNFFTFLTSLNDQGFLLKKGKQLYQL 502 (613)
Q Consensus 472 ~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l 502 (613)
..++.++++++++.+.++|.+... +|.|+|
T Consensus 31 ~~~s~~eL~~fL~~lv~e~~L~~~-~G~YkL 60 (60)
T PF08672_consen 31 YDISLEELQEFLDRLVEEGKLECS-GGSYKL 60 (60)
T ss_dssp TT--HHHHHHHHHHHHHTTSEE---TTEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCcEEec-CCEEeC
Confidence 456789999999999999999887 788886
No 190
>CHL00181 cbbX CbbX; Provisional
Probab=23.69 E-value=1.6e+02 Score=30.85 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=15.7
Q ss_pred CcceeecCCCCCCcchhh
Q psy2640 418 DAHVLIVGDPGLGKSQML 435 (613)
Q Consensus 418 ~idil~vgdpGtgKSq~l 435 (613)
..|+++.|.|||||+...
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468989999999999984
No 191
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=23.50 E-value=1.5e+02 Score=28.01 Aligned_cols=13 Identities=46% Similarity=0.981 Sum_probs=11.6
Q ss_pred eecCCCCCCcchh
Q psy2640 422 LIVGDPGLGKSQM 434 (613)
Q Consensus 422 l~vgdpGtgKSq~ 434 (613)
++.|.||+|||.+
T Consensus 3 li~G~~G~GKT~l 15 (187)
T cd01124 3 LLSGGPGTGKTTF 15 (187)
T ss_pred EEEcCCCCCHHHH
Confidence 5789999999998
No 192
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.36 E-value=3.2e+02 Score=25.44 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=36.3
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCC-ceEEEechh
Q psy2640 459 VFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGK-QLYQLMSAK 506 (613)
Q Consensus 459 ~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~-~~~~l~~~~ 506 (613)
-+|+.++ ....|.+...+...+..|...|.++..|. |+|.-..+.
T Consensus 26 RiTi~ql---~~~TGasR~Tvk~~lreLVa~G~l~~~G~~GvF~seqA~ 71 (127)
T PF06163_consen 26 RITIKQL---VAKTGASRNTVKRYLRELVARGDLYRHGRSGVFPSEQAR 71 (127)
T ss_pred CccHHHH---HHHHCCCHHHHHHHHHHHHHcCCeEeCCCccccccHHHH
Confidence 4677774 55679999999999999999999999999 887644433
No 193
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=23.23 E-value=78 Score=37.02 Aligned_cols=38 Identities=11% Similarity=-0.042 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhcccccccccChhHHHHHHHHhhhcc
Q psy2640 558 KKGKQLYQLMSARAKCELREEASKQDAQDVIDIMKWSL 595 (613)
Q Consensus 558 ~l~esLiRLseArAkl~lre~vt~~Da~~vv~im~~s~ 595 (613)
+..++|+|.+.+.|+.+-++.||.+|+++|++..++..
T Consensus 358 R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~~ 395 (608)
T TIGR00764 358 RELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKTLE 395 (608)
T ss_pred HHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHHHH
Confidence 34477999999999999999999999999999887643
No 194
>PRK13949 shikimate kinase; Provisional
Probab=23.20 E-value=1.9e+02 Score=27.70 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=12.9
Q ss_pred eeecCCCCCCcchhh
Q psy2640 421 VLIVGDPGLGKSQML 435 (613)
Q Consensus 421 il~vgdpGtgKSq~l 435 (613)
++++|.||.|||..-
T Consensus 4 I~liG~~GsGKstl~ 18 (169)
T PRK13949 4 IFLVGYMGAGKTTLG 18 (169)
T ss_pred EEEECCCCCCHHHHH
Confidence 568899999999983
No 195
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=23.10 E-value=1.4e+02 Score=20.75 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH
Q psy2640 464 ELKQLATSANISVDNFFTFLTSL 486 (613)
Q Consensus 464 el~~~a~~~gi~~~~~~~~i~~L 486 (613)
++...|.+.|++.++|.++++..
T Consensus 7 ~Li~eA~~~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 7 ELIKEAKESGLSKEEIREFLEFN 29 (30)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhC
Confidence 34456778899999999988753
No 196
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=23.05 E-value=3.3e+02 Score=20.44 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=26.8
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEec
Q psy2640 459 VFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKK 495 (613)
Q Consensus 459 ~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~ 495 (613)
.++..+ +|+..|++...+..-++.|++.|+.+..
T Consensus 15 ~it~~e---La~~l~vS~rTi~~~i~~L~~~~~~I~~ 48 (55)
T PF08279_consen 15 PITAKE---LAEELGVSRRTIRRDIKELREWGIPIES 48 (55)
T ss_dssp SBEHHH---HHHHCTS-HHHHHHHHHHHHHTT-EEEE
T ss_pred CcCHHH---HHHHhCCCHHHHHHHHHHHHHCCCeEEe
Confidence 478877 6889999999999999999999954443
No 197
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.82 E-value=1.3e+02 Score=32.67 Aligned_cols=16 Identities=31% Similarity=0.299 Sum_probs=13.2
Q ss_pred ccCceeccccccCCCc
Q psy2640 120 ADQGVCCIDEFDKMSA 135 (613)
Q Consensus 120 ad~gv~ciDEfdkm~~ 135 (613)
++..++.|||.++|+.
T Consensus 118 ~~~kviIIDEa~~l~~ 133 (363)
T PRK14961 118 SRFKVYLIDEVHMLSR 133 (363)
T ss_pred CCceEEEEEChhhcCH
Confidence 3456899999999987
No 198
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.55 E-value=2e+02 Score=33.34 Aligned_cols=17 Identities=29% Similarity=0.260 Sum_probs=14.3
Q ss_pred cccCceeccccccCCCc
Q psy2640 119 LADQGVCCIDEFDKMSA 135 (613)
Q Consensus 119 Lad~gv~ciDEfdkm~~ 135 (613)
.++.-|+.|||.++|+.
T Consensus 117 ~g~~kViIIDEa~~ls~ 133 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSK 133 (546)
T ss_pred cCCcEEEEEechhhccH
Confidence 34667999999999998
No 199
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=22.46 E-value=1.3e+02 Score=21.09 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=21.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhCCcE
Q psy2640 467 QLATSANISVDNFFTFLTSLNDQGFL 492 (613)
Q Consensus 467 ~~a~~~gi~~~~~~~~i~~L~~~G~i 492 (613)
++|.-.|++.+-+...+.+|+++|.|
T Consensus 7 diA~~lG~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 7 DIADYLGLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp HHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred HHHHHhCCcHHHHHHHHHHHHHcCCC
Confidence 36788899999999999999999975
No 200
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=22.40 E-value=3e+02 Score=27.16 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=31.4
Q ss_pred CCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEec-CCce
Q psy2640 456 SRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKK-GKQL 499 (613)
Q Consensus 456 ~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~-g~~~ 499 (613)
++..++.. +++++.|++..-+.+++..|..+|++... +.|.
T Consensus 31 pG~~L~e~---~La~~lgVSRtpVREAL~~L~~eGLV~~~~~~g~ 72 (221)
T PRK11414 31 PGARLITK---NLAEQLGMSITPVREALLRLVSVNALSVAPAQAF 72 (221)
T ss_pred CCCccCHH---HHHHHHCCCchhHHHHHHHHHHCCCEEecCCCce
Confidence 34444543 58999999999999999999999999654 4443
No 201
>KOG1942|consensus
Probab=22.31 E-value=1.9e+02 Score=31.07 Aligned_cols=73 Identities=21% Similarity=0.251 Sum_probs=44.0
Q ss_pred ecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCe
Q psy2640 112 LEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQS 191 (613)
Q Consensus 112 le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~ 191 (613)
++.|-..|- -||++|||..-++. .|-..||.|+|.-.
T Consensus 288 id~GvAElv-PGVLFIDEVhMLDi------------------------------------------EcFTyL~kalES~i 324 (456)
T KOG1942|consen 288 IDQGVAELV-PGVLFIDEVHMLDI------------------------------------------ECFTYLHKALESPI 324 (456)
T ss_pred Hhcchhhhc-CcceEeeehhhhhh------------------------------------------HHHHHHHHHhcCCC
Confidence 444544443 47999999988876 48889999999754
Q ss_pred EEEecccceeecCCcceeecccCCCCCCCCCCccchhhcccccccccccc
Q psy2640 192 ISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFD 241 (613)
Q Consensus 192 isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFD 241 (613)
--+ -|.++=...|.|=. .-+ +..--.+|+.||+|.=
T Consensus 325 aPi---vifAsNrG~~~irG-------t~d----~~sPhGip~dllDRl~ 360 (456)
T KOG1942|consen 325 API---VIFASNRGMCTIRG-------TED----ILSPHGIPPDLLDRLL 360 (456)
T ss_pred Cce---EEEecCCcceeecC-------CcC----CCCCCCCCHHHhhhee
Confidence 322 13333333443322 222 1222358888999983
No 202
>PRK06851 hypothetical protein; Provisional
Probab=22.24 E-value=87 Score=34.29 Aligned_cols=109 Identities=22% Similarity=0.259 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCC
Q psy2640 310 IPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCP 389 (613)
Q Consensus 310 i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~ 389 (613)
|+.+.|+++ |+.+ -.+..+......+.|..+.+... --.++|++-.=+ -...--+.++++.+-
T Consensus 112 ~d~~~l~~~----k~eI--~~~~~~~~~~~~~Ay~~l~~A~~-------ihdd~e~~y~~~----md~~k~~~~~~~l~~ 174 (367)
T PRK06851 112 WDEDKLRKH----KEEI--LKINEEISRCFQRAYEYLNEALA-------IHDEWEKIYIEN----MDFAKANELTDELIQ 174 (367)
T ss_pred hChHHHHHH----HHHH--HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh----CCHHHHHHHHHHHHH
Confidence 555666655 1111 13445555666666666654211 112334332211 122333444555555
Q ss_pred ccchhhHHH--HHHHHhhhCCcccCCC-------CCCC--cceeecCCCCCCcchhh
Q psy2640 390 SIFGHEMVK--AGLLLALFGGCHSTNG-------SRGD--AHVLIVGDPGLGKSQML 435 (613)
Q Consensus 390 ~I~~~~~~k--~gl~l~l~GG~~~~~~-------~rg~--idil~vgdpGtgKSq~l 435 (613)
++|+....+ .|-.--.|.|...+.| .... --+++.|.||+|||.++
T Consensus 175 ~l~~~~~~~~~~g~~rh~F~ga~Tp~G~~s~~~~l~~~~~~~~~i~G~pG~GKstl~ 231 (367)
T PRK06851 175 ELFKGAPGKISKGKVRHLFLGAITPKGAVDFVPSLTEGVKNRYFLKGRPGTGKSTML 231 (367)
T ss_pred HHhccCcccccCCceeeeeccccCCCcHHhhHHhHhcccceEEEEeCCCCCcHHHHH
Confidence 555443322 3333334444333222 1112 22667899999999985
No 203
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=22.21 E-value=82 Score=33.98 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=29.6
Q ss_pred HHHHHHhhcccccccccChhHHHHHH-HHhhhcchhh
Q psy2640 563 LYQLMSARAKCELREEASKQDAQDVI-DIMKWSLIDT 598 (613)
Q Consensus 563 LiRLseArAkl~lre~vt~~Da~~vv-~im~~s~~~~ 598 (613)
|+|.+.|+|=++=|+.||.+|+..++ ..+.|.+.-.
T Consensus 278 l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl~hR~~~~ 314 (334)
T PRK13407 278 LLRAARALAAFEGAEAVGRSHLRSVATMALSHRLRRD 314 (334)
T ss_pred HHHHHHHHHHHcCCCeeCHHHHHHHHHHhhhhhccCC
Confidence 99999999999999999999996655 4566666543
No 204
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=22.01 E-value=4e+02 Score=31.31 Aligned_cols=19 Identities=47% Similarity=0.905 Sum_probs=15.6
Q ss_pred eeecCCCCCCcchhhhHHH
Q psy2640 421 VLIVGDPGLGKSQMLHACC 439 (613)
Q Consensus 421 il~vgdpGtgKSq~l~~~~ 439 (613)
+++.|.+|+|||.+++++.
T Consensus 317 L~LyG~sGsGKTHLL~AIa 335 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIG 335 (617)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6678999999999976643
No 205
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.98 E-value=1.7e+02 Score=34.68 Aligned_cols=15 Identities=33% Similarity=0.321 Sum_probs=12.5
Q ss_pred cCceeccccccCCCc
Q psy2640 121 DQGVCCIDEFDKMSA 135 (613)
Q Consensus 121 d~gv~ciDEfdkm~~ 135 (613)
..-|+.|||.+.|+.
T Consensus 118 k~KV~IIDEVh~LS~ 132 (702)
T PRK14960 118 RFKVYLIDEVHMLST 132 (702)
T ss_pred CcEEEEEechHhcCH
Confidence 345899999999987
No 206
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=21.98 E-value=3.2e+02 Score=27.66 Aligned_cols=58 Identities=19% Similarity=0.344 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCceEEEech
Q psy2640 442 KKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSA 505 (613)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l~~~ 505 (613)
.+.+++|.-.+. ....+++.| ++...|++...+..++..|.+.|++... .+.|.+-.+
T Consensus 9 ~ral~IL~~l~~--~~~~~~l~e---ia~~lglpksT~~RlL~tL~~~G~l~~~-~~~Y~lG~~ 66 (248)
T TIGR02431 9 ARGLAVIEAFGA--ERPRLTLTD---VAEATGLTRAAARRFLLTLVELGYVTSD-GRLFWLTPR 66 (248)
T ss_pred HHHHHHHHHHhc--CCCCCCHHH---HHHHHCcCHHHHHHHHHHHHHCCCEEeC-CCEEEecHH
Confidence 344444444332 234567766 6888999999999999999999999874 577997643
No 207
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=21.69 E-value=3.7e+02 Score=20.88 Aligned_cols=40 Identities=23% Similarity=0.210 Sum_probs=32.9
Q ss_pred ccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCceE
Q psy2640 458 SVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLY 500 (613)
Q Consensus 458 ~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~ 500 (613)
+.+++.+ ++...|++..-+..-+..|.++|.+....+|..
T Consensus 13 ~~~s~~e---la~~~~VS~~TiRRDl~~L~~~g~i~r~~GG~~ 52 (57)
T PF08220_consen 13 GKVSVKE---LAEEFGVSEMTIRRDLNKLEKQGLIKRTHGGAV 52 (57)
T ss_pred CCEEHHH---HHHHHCcCHHHHHHHHHHHHHCCCEEEEcCEEE
Confidence 4567777 577789999999999999999999888777643
No 208
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=21.67 E-value=1.4e+02 Score=35.45 Aligned_cols=107 Identities=22% Similarity=0.255 Sum_probs=60.5
Q ss_pred CCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC--CccchhhHHHHHHHHhh
Q psy2640 328 KPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC--PSIFGHEMVKAGLLLAL 405 (613)
Q Consensus 328 ~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~--~~I~~~~~~k~gl~l~l 405 (613)
...+++++++.+....-+++..+..+-...++---+++++.|=.-. ..-.-.+.-....+ ..-||.+.+|--++-=+
T Consensus 261 ~~~~p~evk~k~~~El~kL~~m~~~SaE~~ViRnYlDwll~lPW~~-~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyL 339 (782)
T COG0466 261 KLKLPKEAKEKAEKELKKLETMSPMSAEATVIRNYLDWLLDLPWGK-RSKDKLDLKKAEKILDKDHYGLEKVKERILEYL 339 (782)
T ss_pred hcCCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhCCCcc-ccchhhhHHHHHHHhcccccCchhHHHHHHHHH
Confidence 5689999999999888888876554433334445677776554322 11111111111111 44566666665543211
Q ss_pred hCCccc-CCCCCCCcceeecCCCCCCcchhhhHH
Q psy2640 406 FGGCHS-TNGSRGDAHVLIVGDPGLGKSQMLHAC 438 (613)
Q Consensus 406 ~GG~~~-~~~~rg~idil~vgdpGtgKSq~l~~~ 438 (613)
.+++ .....|-| +|+||-||.||+-+-+.+
T Consensus 340 --AV~~l~~~~kGpI-LcLVGPPGVGKTSLgkSI 370 (782)
T COG0466 340 --AVQKLTKKLKGPI-LCLVGPPGVGKTSLGKSI 370 (782)
T ss_pred --HHHHHhccCCCcE-EEEECCCCCCchhHHHHH
Confidence 1111 23445655 558999999999884443
No 209
>PRK12377 putative replication protein; Provisional
Probab=21.58 E-value=1.9e+02 Score=29.79 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=40.5
Q ss_pred cceeecCCCCCCcchhhhHHHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCc
Q psy2640 419 AHVLIVGDPGLGKSQMLHACCAAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQ 498 (613)
Q Consensus 419 idil~vgdpGtgKSq~l~~~~~~~~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~ 498 (613)
..+++.|.||+|||.++.++.. .+... ......+++.++.......--......++++.|.....++...=+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~------~l~~~--g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg 173 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGN------RLLAK--GRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIG 173 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHH------HHHHc--CCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCC
Confidence 3677889999999999544321 11111 011223456665443222100112344678888887777776655
Q ss_pred eEE
Q psy2640 499 LYQ 501 (613)
Q Consensus 499 ~~~ 501 (613)
.-.
T Consensus 174 ~~~ 176 (248)
T PRK12377 174 IQR 176 (248)
T ss_pred CCC
Confidence 443
No 210
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.56 E-value=1.7e+02 Score=33.96 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=14.1
Q ss_pred cccCceeccccccCCCc
Q psy2640 119 LADQGVCCIDEFDKMSA 135 (613)
Q Consensus 119 Lad~gv~ciDEfdkm~~ 135 (613)
.++.-|+.|||.+.|+.
T Consensus 117 ~~~~KVvIIdev~~Lt~ 133 (576)
T PRK14965 117 RSRYKIFIIDEVHMLST 133 (576)
T ss_pred cCCceEEEEEChhhCCH
Confidence 35667899999999987
No 211
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=21.51 E-value=2.3e+02 Score=27.23 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=40.2
Q ss_pred CCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEec-C-CceEEEechhhHHHH
Q psy2640 456 SRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKK-G-KQLYQLMSAKKFISV 511 (613)
Q Consensus 456 ~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~-g-~~~~~l~~~~~~~~i 511 (613)
++..++.++ +|++.+++..-+..++..|...|++... | +|-|.|...-+.+++
T Consensus 22 ~~~~vs~~e---IA~~~~ip~~~l~kIl~~L~~aGLv~s~rG~~GGy~Lar~p~~Itl 76 (164)
T PRK10857 22 EAGPVPLAD---ISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASSIAV 76 (164)
T ss_pred CCCcCcHHH---HHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCCeeccCCHHHCCH
Confidence 344567776 6888999999999999999999999853 2 256888755554444
No 212
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=21.37 E-value=1.9e+02 Score=24.44 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=31.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCceEEEe
Q psy2640 466 KQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLM 503 (613)
Q Consensus 466 ~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l~ 503 (613)
.++|...|++...+...+..|...|++....+..|.+.
T Consensus 3 ~ela~~l~is~stvs~~l~~L~~~glI~r~~~~~~~lT 40 (96)
T smart00529 3 SEIAERLNVSPPTVTQMLKKLEKDGLVEYEPYRGITLT 40 (96)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCEEEcCCCceEec
Confidence 35788889999999999999999999998876556554
No 213
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=21.33 E-value=2e+02 Score=28.43 Aligned_cols=17 Identities=53% Similarity=0.933 Sum_probs=13.8
Q ss_pred CCcceeecCCCCCCcchh
Q psy2640 417 GDAHVLIVGDPGLGKSQM 434 (613)
Q Consensus 417 g~idil~vgdpGtgKSq~ 434 (613)
|. -+|+.|+||+|||.+
T Consensus 19 gs-~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 19 GS-VVLISGPPGSGKTTL 35 (226)
T ss_dssp TS-EEEEEESTTSSHHHH
T ss_pred Cc-EEEEEeCCCCCcHHH
Confidence 44 455889999999998
No 214
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=21.12 E-value=3.1e+02 Score=23.00 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=24.6
Q ss_pred CccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEec
Q psy2640 457 RSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKK 495 (613)
Q Consensus 457 ~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~ 495 (613)
++.+|++++.+......++.+.++.++..|...|+-+..
T Consensus 19 ~G~lT~~eI~~~L~~~~~~~e~id~i~~~L~~~gI~Vvd 57 (82)
T PF03979_consen 19 KGYLTYDEINDALPEDDLDPEQIDEIYDTLEDEGIEVVD 57 (82)
T ss_dssp HSS-BHHHHHHH-S-S---HHHHHHHHHHHHTT----B-
T ss_pred cCcCCHHHHHHHcCccCCCHHHHHHHHHHHHHCCCEEec
Confidence 346899999888777789999999999999999977665
No 215
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=20.82 E-value=9.5e+02 Score=32.66 Aligned_cols=92 Identities=24% Similarity=0.361 Sum_probs=55.8
Q ss_pred EEEEeeCCCCeeecCceeecc--cCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccch
Q psy2640 100 VTLSREGGGDFALEAGALVLA--DQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMS 177 (613)
Q Consensus 100 a~~~~~~~g~~~le~GalvLa--d~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (613)
++-+-|.+|...++-|+||=| .|--..+||++-.+.
T Consensus 932 GTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLApT------------------------------------------ 969 (4600)
T COG5271 932 GTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAPT------------------------------------------ 969 (4600)
T ss_pred hceeecCCCceeeehhHHHHHHhcCcEEEeeccccCcH------------------------------------------
Confidence 334455578888999999644 555677888876654
Q ss_pred HHHHHHHhhhcC-CeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccc
Q psy2640 178 AQHQALLEAMEQ-QSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRF 240 (613)
Q Consensus 178 ~~~~al~eameq-q~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRF 240 (613)
+...||.--+.+ ..+-|+---.+..=.-.+-+.|+.||+++ |--.|. |+.+.--||
T Consensus 970 DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~-YgGRK~------LSrAFRNRF 1026 (4600)
T COG5271 970 DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGG-YGGRKG------LSRAFRNRF 1026 (4600)
T ss_pred HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCcc-ccchHH------HHHHHHhhh
Confidence 456666655543 33445443333333556788899999843 432222 445555555
No 216
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=20.33 E-value=5.6e+02 Score=30.42 Aligned_cols=109 Identities=20% Similarity=0.272 Sum_probs=65.0
Q ss_pred hhcceEEEecccccccCceEEEEeeCCCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccc
Q psy2640 81 HYIISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAF 160 (613)
Q Consensus 81 ~~~r~~~~~g~~~s~~gLta~~~~~~~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~ 160 (613)
.+|-+.++||...|-|-|..... +| +.|.+-+- -++|.||+..++-.+.
T Consensus 236 iSp~~~liSGG~~T~A~LFyn~~---~~----~~GlVg~~--D~VaFDEva~i~f~d~---------------------- 284 (675)
T TIGR02653 236 CSPNSILMSGGQTTVANLFYNMS---TR----QIGLVGMW--DVVAFDEVAGIEFKDK---------------------- 284 (675)
T ss_pred cCCceEEEECCccchhHeeEEcC---CC----ceeEEeec--cEEEEeeccccccCCH----------------------
Confidence 45778999998888777765433 33 22333222 3678999998776221
Q ss_pred cccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccC---CCC---CCCCCCccchhhccccc
Q psy2640 161 ITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAAN---PVG---GHYNRAKTVAENLRMGQ 234 (613)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaN---P~~---g~~~~~~~~~e~i~l~~ 234 (613)
+.-+.|.--||.++.|..+ .+..|.+|++---| |+. .+-+.-.++.+-+.-..
T Consensus 285 -----------------d~v~imK~YM~sG~FsRG~----~~~~a~as~vfvGNi~~~v~~~~k~~~lf~~lP~~~~~Ds 343 (675)
T TIGR02653 285 -----------------DGVQIMKDYMASGSFARGK----ESIEGKASIVFVGNINQSVETLVKTSHLFAPFPEAMRIDT 343 (675)
T ss_pred -----------------HHHHHHHHHhhcCcccccc----cccccceeEEEEcccCCchHHHhhcccccccCChhhcccc
Confidence 2455778889999998765 35667777766555 220 00011112333444456
Q ss_pred ccccccc
Q psy2640 235 ALLSRFD 241 (613)
Q Consensus 235 ~llsRFD 241 (613)
++|+||.
T Consensus 344 AflDRiH 350 (675)
T TIGR02653 344 AFFDRFH 350 (675)
T ss_pred hHHHHhh
Confidence 7888885
No 217
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=20.07 E-value=1.9e+02 Score=20.94 Aligned_cols=37 Identities=27% Similarity=0.253 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCc
Q psy2640 459 VFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQ 498 (613)
Q Consensus 459 ~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~ 498 (613)
.++..+ ++...+++...+...+..|.+.|++....++
T Consensus 14 ~~s~~~---l~~~l~~s~~tv~~~l~~L~~~g~i~~~~~~ 50 (53)
T smart00420 14 KVSVEE---LAELLGVSEMTIRRDLNKLEEQGLLTRVHGG 50 (53)
T ss_pred CcCHHH---HHHHHCCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 466766 5666789999999999999999999876654
No 218
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=20.05 E-value=2.6e+02 Score=30.80 Aligned_cols=49 Identities=20% Similarity=0.037 Sum_probs=28.4
Q ss_pred cCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCcc
Q psy2640 330 ELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSI 391 (613)
Q Consensus 330 ~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I 391 (613)
.|+++|.++|...-. .-|.|---.|+--|.-. |+.+.+..|..+|+.++
T Consensus 380 ~l~~~Ale~L~~ig~------------etSLRYa~qLL~pa~ii-A~~rg~~~V~~~dVe~a 428 (450)
T COG1224 380 ELSDDALEYLTDIGE------------ETSLRYAVQLLTPASII-AKRRGSKRVEVEDVERA 428 (450)
T ss_pred ccCHHHHHHHHhhch------------hhhHHHHHHhccHHHHH-HHHhCCCeeehhHHHHH
Confidence 566666666554221 12444444444445555 78888888888887544
Done!