Query psy2640
Match_columns 613
No_of_seqs 350 out of 2163
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 21:24:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f8t_A Predicted ATPase involv 100.0 8E-50 2.7E-54 433.1 16.3 302 5-421 183-501 (506)
2 3f9v_A Minichromosome maintena 100.0 7.9E-42 2.7E-46 386.7 11.8 309 9-398 267-593 (595)
3 3f8t_A Predicted ATPase involv 99.8 3.9E-20 1.3E-24 201.1 3.6 231 354-609 184-502 (506)
4 3f9v_A Minichromosome maintena 99.6 1.3E-18 4.3E-23 197.0 -7.9 230 355-597 265-593 (595)
5 2r44_A Uncharacterized protein 99.5 2E-13 6.7E-18 142.5 15.2 260 33-392 24-294 (331)
6 1g8p_A Magnesium-chelatase 38 99.5 1.6E-13 5.6E-18 143.2 11.3 265 28-394 20-321 (350)
7 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 1.6E-12 5.3E-17 144.1 18.8 264 33-399 19-293 (500)
8 3k1j_A LON protease, ATP-depen 99.0 4.2E-10 1.5E-14 127.4 6.3 165 111-392 191-372 (604)
9 1um8_A ATP-dependent CLP prote 98.0 9E-06 3.1E-10 86.0 7.8 124 64-215 77-203 (376)
10 3pfi_A Holliday junction ATP-d 97.9 0.00012 4.2E-09 75.7 14.4 114 64-246 60-181 (338)
11 2bjv_A PSP operon transcriptio 97.8 7.4E-05 2.5E-09 74.8 9.7 131 64-245 34-174 (265)
12 1ofh_A ATP-dependent HSL prote 97.7 3.4E-05 1.2E-09 78.3 6.7 238 34-371 13-270 (310)
13 1ojl_A Transcriptional regulat 97.4 0.00055 1.9E-08 70.6 10.8 131 64-245 30-170 (304)
14 4akg_A Glutathione S-transfera 97.4 0.0021 7.1E-08 83.3 17.0 144 119-372 695-838 (2695)
15 1hqc_A RUVB; extended AAA-ATPa 97.3 0.016 5.4E-07 59.0 19.9 114 64-246 43-165 (324)
16 3hws_A ATP-dependent CLP prote 97.1 6.8E-05 2.3E-09 78.9 0.0 151 37-215 16-182 (363)
17 4fcw_A Chaperone protein CLPB; 97.1 0.00069 2.4E-08 68.9 6.7 105 116-265 114-231 (311)
18 3m6a_A ATP-dependent protease 96.9 0.0018 6.3E-08 72.1 8.5 170 35-261 80-264 (543)
19 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0069 2.4E-07 69.9 13.4 183 206-437 315-507 (758)
20 1r6b_X CLPA protein; AAA+, N-t 96.8 0.001 3.5E-08 76.9 6.0 105 115-264 551-667 (758)
21 3pxi_A Negative regulator of g 95.6 0.0041 1.4E-07 71.8 2.8 100 118-265 576-677 (758)
22 2c9o_A RUVB-like 1; hexameric 95.5 0.017 5.8E-07 62.7 6.9 69 311-393 367-435 (456)
23 1qvr_A CLPB protein; coiled co 95.4 0.016 5.4E-07 68.0 6.7 101 118-263 657-770 (854)
24 3vkg_A Dynein heavy chain, cyt 95.4 0.16 5.6E-06 66.8 16.3 53 198-264 699-751 (3245)
25 1g41_A Heat shock protein HSLU 95.2 0.046 1.6E-06 59.3 9.1 152 115-368 243-401 (444)
26 3nbx_X ATPase RAVA; AAA+ ATPas 95.2 0.0047 1.6E-07 68.2 1.1 35 561-595 256-290 (500)
27 3pxi_A Negative regulator of g 95.0 0.2 6.8E-06 57.8 14.1 93 206-344 291-383 (758)
28 3syl_A Protein CBBX; photosynt 94.8 0.065 2.2E-06 54.1 8.3 77 116-246 125-201 (309)
29 1qvr_A CLPB protein; coiled co 93.2 0.27 9.4E-06 57.5 10.6 48 207-265 300-347 (854)
30 3uk6_A RUVB-like 2; hexameric 92.9 0.29 1E-05 50.5 9.1 33 359-392 295-327 (368)
31 3n70_A Transport activator; si 92.6 0.055 1.9E-06 48.9 2.8 61 64-135 29-90 (145)
32 1ny5_A Transcriptional regulat 92.0 0.057 2E-06 57.3 2.3 65 107-215 217-281 (387)
33 1g8p_A Magnesium-chelatase 38 91.9 0.63 2.1E-05 47.4 10.0 36 561-596 292-328 (350)
34 3dzd_A Transcriptional regulat 91.8 0.066 2.3E-06 56.5 2.5 107 64-215 157-272 (368)
35 3co5_A Putative two-component 91.0 0.032 1.1E-06 50.4 -0.8 84 64-216 32-116 (143)
36 4akg_A Glutathione S-transfera 90.1 0.33 1.1E-05 63.3 7.0 75 179-266 1358-1434(2695)
37 3pvs_A Replication-associated 89.2 0.54 1.8E-05 50.9 6.9 121 64-264 55-179 (447)
38 3pxg_A Negative regulator of g 88.7 1.7 5.7E-05 47.1 10.5 124 180-367 280-403 (468)
39 1in4_A RUVB, holliday junction 88.3 10 0.00036 38.6 15.8 47 459-508 276-323 (334)
40 3vkg_A Dynein heavy chain, cyt 87.3 5 0.00017 53.2 15.0 75 179-266 1396-1472(3245)
41 1ltl_A DNA replication initiat 87.2 0.068 2.3E-06 54.4 -1.7 124 12-180 12-141 (279)
42 3vfd_A Spastin; ATPase, microt 83.3 0.96 3.3E-05 47.5 4.9 60 180-262 235-294 (389)
43 2vl6_A SSO MCM N-TER, minichro 82.7 0.36 1.2E-05 48.6 1.2 134 11-181 7-151 (268)
44 2zan_A Vacuolar protein sortin 81.4 2.6 8.9E-05 45.2 7.5 36 204-253 269-304 (444)
45 2qz4_A Paraplegin; AAA+, SPG7, 80.9 7.2 0.00025 37.6 10.0 34 358-392 213-246 (262)
46 3h4m_A Proteasome-activating n 80.5 2.8 9.5E-05 41.4 6.8 36 358-394 222-257 (285)
47 2lnb_A Z-DNA-binding protein 1 79.4 3.4 0.00012 33.7 5.6 54 442-503 22-75 (80)
48 2heo_A Z-DNA binding protein 1 79.2 6 0.0002 30.9 7.0 41 459-502 25-65 (67)
49 3t15_A Ribulose bisphosphate c 76.7 2.6 8.7E-05 42.5 5.3 66 179-260 128-195 (293)
50 3u61_B DNA polymerase accessor 76.1 1.8 6.1E-05 43.8 4.0 68 121-258 105-173 (324)
51 3h4m_A Proteasome-activating n 73.0 1.8 6E-05 42.8 2.9 35 560-594 227-261 (285)
52 3d8b_A Fidgetin-like protein 1 71.9 3 0.0001 43.3 4.4 52 180-254 204-255 (357)
53 2chg_A Replication factor C sm 71.6 5.6 0.00019 36.6 5.9 65 120-254 101-165 (226)
54 1ypw_A Transitional endoplasmi 70.4 74 0.0025 36.7 16.2 19 419-437 512-530 (806)
55 2qp9_X Vacuolar protein sortin 69.9 4.4 0.00015 42.0 5.2 41 204-258 185-225 (355)
56 1xwi_A SKD1 protein; VPS4B, AA 69.7 11 0.00037 38.4 8.1 36 204-253 147-182 (322)
57 1sxj_D Activator 1 41 kDa subu 69.2 4.6 0.00016 40.9 5.1 41 38-80 39-79 (353)
58 2chq_A Replication factor C sm 68.3 4.7 0.00016 40.0 4.9 138 38-252 19-163 (319)
59 3eie_A Vacuolar protein sortin 66.0 5.2 0.00018 40.6 4.7 44 204-261 152-195 (322)
60 1qbj_A Protein (double-strande 65.7 20 0.00068 29.2 7.3 59 443-507 14-74 (81)
61 3b9p_A CG5977-PA, isoform A; A 64.9 8.9 0.0003 37.9 6.1 35 205-253 158-192 (297)
62 1iqp_A RFCS; clamp loader, ext 62.9 7.6 0.00026 38.6 5.2 16 120-135 109-124 (327)
63 2p65_A Hypothetical protein PF 57.2 2.3 8E-05 38.3 0.2 30 206-243 152-181 (187)
64 1jbk_A CLPB protein; beta barr 53.7 5.8 0.0002 35.5 2.3 37 206-252 151-187 (195)
65 2jt1_A PEFI protein; solution 53.2 44 0.0015 26.9 7.2 51 442-495 7-57 (77)
66 1fnn_A CDC6P, cell division co 51.6 1E+02 0.0036 30.9 11.8 38 459-496 308-352 (389)
67 3eie_A Vacuolar protein sortin 49.4 20 0.00068 36.2 5.7 18 578-595 285-302 (322)
68 1qgp_A Protein (double strande 49.0 45 0.0016 26.6 6.7 55 443-503 18-74 (77)
69 2r44_A Uncharacterized protein 47.6 13 0.00044 37.5 3.9 37 560-596 266-303 (331)
70 2y75_A HTH-type transcriptiona 45.7 57 0.002 28.1 7.4 47 457-506 24-72 (129)
71 1njg_A DNA polymerase III subu 45.3 37 0.0013 31.2 6.5 15 121-135 126-140 (250)
72 3bos_A Putative DNA replicatio 45.0 75 0.0026 29.4 8.7 17 119-135 102-118 (242)
73 4b4t_J 26S protease regulatory 44.2 58 0.002 34.6 8.4 44 205-266 286-331 (405)
74 4b4t_I 26S protease regulatory 43.7 87 0.003 33.6 9.7 45 204-266 319-365 (437)
75 1sxj_C Activator 1 40 kDa subu 43.7 29 0.00099 35.1 5.9 39 39-79 28-66 (340)
76 3pfi_A Holliday junction ATP-d 42.3 23 0.00078 35.6 4.8 19 419-437 56-74 (338)
77 2gno_A DNA polymerase III, gam 40.8 22 0.00076 36.0 4.4 15 121-135 82-96 (305)
78 2xvc_A ESCRT-III, SSO0910; cel 40.6 77 0.0026 24.3 6.1 36 456-494 22-57 (59)
79 1sxj_B Activator 1 37 kDa subu 39.8 25 0.00085 34.7 4.6 14 122-135 108-121 (323)
80 4b4t_L 26S protease subunit RP 39.7 89 0.0031 33.4 9.1 49 180-253 305-355 (437)
81 3cf0_A Transitional endoplasmi 38.4 39 0.0013 33.7 5.8 51 179-254 138-190 (301)
82 2z4s_A Chromosomal replication 37.4 22 0.00074 37.9 3.9 135 119-394 191-331 (440)
83 1d2n_A N-ethylmaleimide-sensit 36.4 12 0.0004 36.7 1.4 30 204-246 165-195 (272)
84 3mq0_A Transcriptional repress 35.5 97 0.0033 30.6 8.1 60 442-506 30-89 (275)
85 4b4t_K 26S protease regulatory 34.5 52 0.0018 35.1 6.3 35 206-253 311-347 (428)
86 1jr3_A DNA polymerase III subu 34.1 60 0.0021 32.6 6.5 15 121-135 119-133 (373)
87 1xn7_A Hypothetical protein YH 32.2 1E+02 0.0035 24.7 6.2 35 458-495 15-49 (78)
88 4b4t_M 26S protease regulatory 31.1 1.1E+02 0.0037 32.7 8.1 173 3-266 178-369 (434)
89 1jbk_A CLPB protein; beta barr 30.5 41 0.0014 29.6 4.1 18 419-436 44-61 (195)
90 4b4t_H 26S protease regulatory 29.4 1.9E+02 0.0065 31.2 9.6 45 204-266 346-392 (467)
91 3b73_A PHIH1 repressor-like pr 29.3 1.8E+02 0.0062 24.9 7.7 45 459-506 27-73 (111)
92 1mkm_A ICLR transcriptional re 29.2 1.6E+02 0.0055 28.3 8.4 44 459-505 23-66 (249)
93 1lv7_A FTSH; alpha/beta domain 28.8 58 0.002 31.2 5.1 102 204-394 148-251 (257)
94 3t8r_A Staphylococcus aureus C 28.4 1.6E+02 0.0053 26.1 7.5 49 456-507 25-75 (143)
95 1xmk_A Double-stranded RNA-spe 28.3 1.7E+02 0.0058 23.6 6.9 53 442-503 14-69 (79)
96 2qby_A CDC6 homolog 1, cell di 28.3 4.4E+02 0.015 25.9 14.5 37 459-495 305-348 (386)
97 1sxj_E Activator 1 40 kDa subu 28.1 85 0.0029 31.4 6.4 16 120-135 133-148 (354)
98 1u5t_A Appears to BE functiona 25.9 28 0.00095 34.2 2.1 41 553-593 89-143 (233)
99 1a5t_A Delta prime, HOLB; zinc 25.2 44 0.0015 33.9 3.5 16 120-135 107-122 (334)
100 1oyi_A Double-stranded RNA-bin 24.8 65 0.0022 26.4 3.8 41 460-503 31-73 (82)
101 3hu3_A Transitional endoplasmi 24.6 48 0.0016 35.9 3.9 49 179-252 324-374 (489)
102 2xrn_A HTH-type transcriptiona 24.6 1.8E+02 0.0062 27.8 7.8 45 459-506 21-66 (241)
103 3m6a_A ATP-dependent protease 24.5 65 0.0022 35.3 5.0 102 330-437 21-127 (543)
104 1l8q_A Chromosomal replication 24.5 44 0.0015 33.4 3.4 16 120-135 97-112 (324)
105 1ofh_A ATP-dependent HSL prote 24.2 31 0.0011 33.7 2.1 19 419-437 51-69 (310)
106 2p65_A Hypothetical protein PF 24.2 47 0.0016 29.3 3.2 17 419-435 44-60 (187)
107 2v1u_A Cell division control p 24.0 71 0.0024 32.1 4.9 50 204-263 165-214 (387)
108 1y0u_A Arsenical resistance op 23.5 1.1E+02 0.0038 24.6 5.2 42 460-505 44-85 (96)
109 3n70_A Transport activator; si 22.7 36 0.0012 29.8 2.0 18 418-435 24-41 (145)
110 4ham_A LMO2241 protein; struct 22.3 1.8E+02 0.0063 25.1 6.7 34 467-500 43-77 (134)
111 1sxj_C Activator 1 40 kDa subu 22.2 65 0.0022 32.4 4.2 44 386-437 22-65 (340)
112 1on2_A Transcriptional regulat 22.2 3E+02 0.01 23.4 8.1 44 459-505 22-65 (142)
113 1zel_A Hypothetical protein RV 22.0 1.4E+02 0.0049 30.1 6.4 50 455-505 28-78 (298)
114 2k02_A Ferrous iron transport 22.0 1.5E+02 0.0052 24.4 5.6 35 458-495 15-49 (87)
115 1sxj_D Activator 1 41 kDa subu 21.2 55 0.0019 32.6 3.3 43 387-437 35-77 (353)
116 4fcw_A Chaperone protein CLPB; 20.8 52 0.0018 32.2 3.0 19 418-436 47-65 (311)
117 2dk5_A DNA-directed RNA polyme 20.7 3.5E+02 0.012 22.1 7.6 34 457-493 34-67 (91)
118 3lwf_A LIN1550 protein, putati 20.5 1.7E+02 0.0058 26.6 6.2 50 456-508 41-92 (159)
119 1ldd_A APC2WHB, anaphase promo 20.5 1.1E+02 0.0037 24.6 4.2 29 474-502 45-73 (74)
120 1r7j_A Conserved hypothetical 20.5 1.2E+02 0.0041 25.0 4.8 40 460-503 21-60 (95)
No 1
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=100.00 E-value=8e-50 Score=433.10 Aligned_cols=302 Identities=25% Similarity=0.312 Sum_probs=247.2
Q ss_pred ecCCCcchHHHHHHHHHHhhCccccchH--HhhhccchhhhHHHHhhhhhcccchhhhhhh----ccCCchhhhhHHHHh
Q psy2640 5 YKKDGPTDTKIKSCLDFIERHNHLYNVA--EIEERRCYLVDIKVLMNDQIFNDQWKTFLQN----LSNEPQHTINCLGLA 78 (613)
Q Consensus 5 Y~~~s~~~~~i~~~e~~~~~~~~lYd~~--~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~----l~~~p~~~~~~l~la 78 (613)
|.+...+.+-++.|.+ |.++ ++|+.. +|+| ++|+.++|++++++++||..| ...+ +.|.|+. +..|.-+
T Consensus 183 ~~~~~~t~ed~~~i~~-l~~~-~~~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k-~rgdihVLL~G~PGt-KS~Lar~ 257 (506)
T 3f8t_A 183 IPEVHPDPAELEEFRE-LADK-DPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGK-NSERLHVLLAGYPVV-CSEILHH 257 (506)
T ss_dssp SCCCCCCHHHHHHHHH-HHHS-CHHHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS-GGGCCCEEEESCHHH-HHHHHHH
T ss_pred cccCCCCHHHHHHHHH-HHHH-HHHHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc-cCCceeEEEECCCCh-HHHHHHH
Confidence 3444566778888998 5566 899955 8999 999999999999999999877 3332 7899999 9888777
Q ss_pred h-hh-hcceEEEecccccccCceEEEEeeCCCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccc
Q psy2640 79 M-HH-YIISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQY 156 (613)
Q Consensus 79 ~-~~-~~r~~~~~g~~~s~~gLta~~~~~~~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~ 156 (613)
+ |. .||++||+|++++.+|||++ .++++| |.++||+++|||+|+||+|||++|+.
T Consensus 258 i~~~i~pR~~ft~g~~ss~~gLt~s-~r~~tG-~~~~~G~l~LAdgGvl~lDEIn~~~~--------------------- 314 (506)
T 3f8t_A 258 VLDHLAPRGVYVDLRRTELTDLTAV-LKEDRG-WALRAGAAVLADGGILAVDHLEGAPE--------------------- 314 (506)
T ss_dssp HHHHTCSSEEEEEGGGCCHHHHSEE-EEESSS-EEEEECHHHHTTTSEEEEECCTTCCH---------------------
T ss_pred HHHHhCCCeEEecCCCCCccCceEE-EEcCCC-cccCCCeeEEcCCCeeehHhhhhCCH---------------------
Confidence 6 64 69999999999999999999 888888 99999999999999999999999998
Q ss_pred cccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccc
Q psy2640 157 TPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQAL 236 (613)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~l 236 (613)
.++++|||+||||+|+|. |+ ++|++|+|+||+||+. +|++.+++ +|++||+++
T Consensus 315 ---------------------~~qsaLlEaMEe~~VtI~--G~--~lparf~VIAA~NP~~-~yd~~~s~-~~~~Lp~al 367 (506)
T 3f8t_A 315 ---------------------PHRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINPGE-QWPSDPPI-ARIDLDQDF 367 (506)
T ss_dssp ---------------------HHHHHHHHHHHHSEEEET--TE--EEECCCEEEEEECCCC---CCSCGG-GGCCSCHHH
T ss_pred ---------------------HHHHHHHHHHhCCcEEEC--CE--EcCCCeEEEEEeCccc-ccCCCCCc-cccCCChHH
Confidence 589999999999999998 77 9999999999999998 99998998 999999999
Q ss_pred cccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHH
Q psy2640 237 LSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLH 316 (613)
Q Consensus 237 lsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLr 316 (613)
||||||+|++.|.|+++.|.. . ..+.++.+.|+
T Consensus 368 LDRFDLi~i~~d~pd~e~d~e--------~---------------------------------------~~~~ls~e~L~ 400 (506)
T 3f8t_A 368 LSHFDLIAFLGVDPRPGEPEE--------Q---------------------------------------DTEVPSYTLLR 400 (506)
T ss_dssp HTTCSEEEETTC-------------------------------------------------------------CCHHHHH
T ss_pred hhheeeEEEecCCCChhHhhc--------c---------------------------------------cCCCCCHHHHH
Confidence 999999999999999877631 0 11247899999
Q ss_pred HHHHHHh-hhcCCCcCChHHHHHHHHHHHHHHhccC-----CCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC--
Q psy2640 317 KYLAYAR-KYVSKPELSTEAALLLQEFYLNLRKHHH-----SVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC-- 388 (613)
Q Consensus 317 kYI~~ar-~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~-----~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~-- 388 (613)
+||+||| .++ +|.+++++.++|.++|..+|+... ....+++|+|++++|+|+|+|+ |+++++++|+++|+
T Consensus 401 ~yi~~ar~~~~-~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~-A~L~gR~~V~~eDV~~ 478 (506)
T 3f8t_A 401 RYLLYAIREHP-APELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAH-ARMRLSDDVEPEDVDI 478 (506)
T ss_dssp HHHHHHHHHCS-CCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHH-HHHTTCSEECHHHHHH
T ss_pred HHHHHHHhcCC-CceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHH-HHHcCcCCCCHHHHHH
Confidence 9999999 678 999999999999999999998321 1246789999999999999999 99999999999999
Q ss_pred -CccchhhHHHHHHHHhhhCCcccCCCCCCCcce
Q psy2640 389 -PSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHV 421 (613)
Q Consensus 389 -~~I~~~~~~k~gl~l~l~GG~~~~~~~rg~idi 421 (613)
..++..++.+.++ ||.+|.||+
T Consensus 479 Ai~L~~~Sl~~~a~-----------dp~tg~id~ 501 (506)
T 3f8t_A 479 AAELVDWYLETAMQ-----------IPGGDEIRI 501 (506)
T ss_dssp HHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHHHhcC-----------CCCCCeEeE
Confidence 6677777776633 566778888
No 2
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.9e-42 Score=386.69 Aligned_cols=309 Identities=34% Similarity=0.487 Sum_probs=273.7
Q ss_pred CcchHHHHHHHHHHhhCccccchH--HhhhccchhhhHHHHhhhhhcccchhhhhh---------hccCCchhhhhHHHH
Q psy2640 9 GPTDTKIKSCLDFIERHNHLYNVA--EIEERRCYLVDIKVLMNDQIFNDQWKTFLQ---------NLSNEPQHTINCLGL 77 (613)
Q Consensus 9 s~~~~~i~~~e~~~~~~~~lYd~~--~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~---------~l~~~p~~~~~~l~l 77 (613)
..+.+-++.+.+ +.+.+++|+.. +++|.++|+.++|++++++++||..+.+.+ -|.|.|+.++..|.-
T Consensus 267 ~~t~~~~~~i~~-~~~~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 267 IISEEDEKKIKD-LAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp CCTTSTHHHHHT-TSSTTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHH
T ss_pred CCCHHHHHHHHH-HhhCcHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHH
Confidence 345566777777 77889999965 899999999999999999999997654432 278999999988887
Q ss_pred hhhh-hcceEEEecccccccCceEEEEeeC-CCCeeecCceeecccCceeccccccCCCcccccccchhccccccccccc
Q psy2640 78 AMHH-YIISVYVCGNTSTTSGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQ 155 (613)
Q Consensus 78 a~~~-~~r~~~~~g~~~s~~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~ 155 (613)
+++. .+|++|++|.+++.+||++++.++. +|.|.+++|++++|++|+|||||||+|+.
T Consensus 346 ~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~-------------------- 405 (595)
T 3f9v_A 346 FISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRD-------------------- 405 (595)
T ss_dssp SSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCS--------------------
T ss_pred HHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCH--------------------
Confidence 7664 6899999999999999999999998 99999999999999999999999999998
Q ss_pred ccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhcccccc
Q psy2640 156 YTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQA 235 (613)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~ 235 (613)
..+.+|+++||+|++++.++|...++|++++|+||+||..|+|+..+++.+|+.++++
T Consensus 406 ----------------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~a 463 (595)
T 3f9v_A 406 ----------------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPT 463 (595)
T ss_dssp ----------------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSS
T ss_pred ----------------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHH
Confidence 5789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHH
Q psy2640 236 LLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLL 315 (613)
Q Consensus 236 llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lL 315 (613)
|++|||+++++.|.++++ |..|++|++..|... ...+.++.+.+
T Consensus 464 Ll~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~-----------------------------------~~~~~l~~~~l 507 (595)
T 3f9v_A 464 ILSRFDLIFILKDQPGEQ-DRELANYILDVHSGK-----------------------------------STKNIIDIDTL 507 (595)
T ss_dssp SGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCC-----------------------------------SSSSTTCCTTT
T ss_pred HHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhcc-----------------------------------ccccCCCHHHH
Confidence 999999999999999999 999999999887310 01234677889
Q ss_pred HHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCC--CcccchHHHHHHHHHHHhhhhcchhhhhhccccC---Cc
Q psy2640 316 HKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVD--ATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC---PS 390 (613)
Q Consensus 316 rkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~--~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~---~~ 390 (613)
++|++|||+.+ +|.++++|.+.|.++|..+|+...... ..++|+|++++++|+|+|+ |++++++.|+.+|+ ..
T Consensus 508 ~~~i~~ar~~~-~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~-A~l~~~~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 508 RKYIAYARKYV-TPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAY-AKMALKAEVTREDAERAIN 585 (595)
T ss_dssp HHHHHHHHHHH-CCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHH-HHTTSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHH-HHHhCcCCCCHHHHHHHHH
Confidence 99999999998 999999999999999999998665433 6889999999999999999 99999999999999 44
Q ss_pred cchhhHHH
Q psy2640 391 IFGHEMVK 398 (613)
Q Consensus 391 I~~~~~~k 398 (613)
++..++.+
T Consensus 586 l~~~sl~~ 593 (595)
T 3f9v_A 586 IMRLFLES 593 (595)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 55555543
No 3
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.78 E-value=3.9e-20 Score=201.08 Aligned_cols=231 Identities=16% Similarity=0.210 Sum_probs=159.2
Q ss_pred CCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCccchhhHHHHHHHHhhhCCcccCCCCCCCcceeecCCCCCCcch
Q psy2640 354 DATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQ 433 (613)
Q Consensus 354 ~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~~~~k~gl~l~l~GG~~~~~~~rg~idil~vgdpGtgKSq 433 (613)
....+|.++.+.|.+|++ + +.++.+..+.+| |+|++.+|.++++.++||..+ .||++|+|++|+||+ ||+
T Consensus 184 ~~~~~t~ed~~~i~~l~~----~-~~~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k---~rgdihVLL~G~PGt-KS~ 253 (506)
T 3f8t_A 184 PEVHPDPAELEEFRELAD----K-DPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGK---NSERLHVLLAGYPVV-CSE 253 (506)
T ss_dssp CCCCCCHHHHHHHHHHHH----S-CHHHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS---GGGCCCEEEESCHHH-HHH
T ss_pred ccCCCCHHHHHHHHHHHH----H-HHHHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc---cCCceeEEEECCCCh-HHH
Confidence 345689999999998873 4 899999999999 999999999999999999876 899999999999999 999
Q ss_pred hhhHH-HHHHHHHHHHHHHhhhcCCc-----------------cccHHHHHHHHHhC--------CCCHHHHHHHHHHHh
Q psy2640 434 MLHAC-CAAKKFISVLQKKAEVQSRS-----------------VFTVTELKQLATSA--------NISVDNFFTFLTSLN 487 (613)
Q Consensus 434 ~l~~~-~~~~~~~~~l~~~~~~~~~~-----------------~~t~~el~~~a~~~--------gi~~~~~~~~i~~L~ 487 (613)
+++++ .++ .+....+.+. .+.-+.+ .+|... .++......+++.|+
T Consensus 254 Lar~i~~~i-------~pR~~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l-~LAdgGvl~lDEIn~~~~~~qsaLlEaME 325 (506)
T 3f8t_A 254 ILHHVLDHL-------APRGVYVDLRRTELTDLTAVLKEDRGWALRAGAA-VLADGGILAVDHLEGAPEPHRWALMEAMD 325 (506)
T ss_dssp HHHHHHHHT-------CSSEEEEEGGGCCHHHHSEEEEESSSEEEEECHH-HHTTTSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-------CCCeEEecCCCCCccCceEEEEcCCCcccCCCee-EEcCCCeeehHhhhhCCHHHHHHHHHHHh
Confidence 96554 322 1111111000 0111111 233321 133444567888887
Q ss_pred hCCcEEecCCceEEEechhhHHHHHhhhhhhccccccchhhhcccchhhhccccccccccccCch---------------
Q psy2640 488 DQGFLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLND--------------- 552 (613)
Q Consensus 488 ~~G~i~~~g~~~~~l~~~~~~~~i~~~k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------------- 552 (613)
++-+.+. |. .+..+|-++...++.. .+++..++ ++.+|++++++|||.++..++.++.
T Consensus 326 e~~VtI~---G~-~lparf~VIAA~NP~~--~yd~~~s~-~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~ 398 (506)
T 3f8t_A 326 KGTVTVD---GI-ALNARCAVLAAINPGE--QWPSDPPI-ARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTL 398 (506)
T ss_dssp HSEEEET---TE-EEECCCEEEEEECCCC----CCSCGG-GGCCSCHHHHTTCSEEEETTC--------------CCHHH
T ss_pred CCcEEEC---CE-EcCCCeEEEEEeCccc--ccCCCCCc-cccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHH
Confidence 7665544 34 6666665544444443 34444566 7889999999999998876653210
Q ss_pred -------------------------hHHHHHHH---------------------HHHHHHHHhhcccccccccChhHHHH
Q psy2640 553 -------------------------QGFLLKKG---------------------KQLYQLMSARAKCELREEASKQDAQD 586 (613)
Q Consensus 553 -------------------------~~~y~~l~---------------------esLiRLseArAkl~lre~vt~~Da~~ 586 (613)
.++|..+| ++|||||||+|||++|+.|+.+|+.+
T Consensus 399 L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~ 478 (506)
T 3f8t_A 399 LRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDI 478 (506)
T ss_dssp HHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHH
Confidence 45666655 35999999999999999999999999
Q ss_pred HHHHhhhcchhhhcC-CCCCcccc
Q psy2640 587 VIDIMKWSLIDTSLN-GGGGIDFT 609 (613)
Q Consensus 587 vv~im~~s~~~~~~d-e~g~~~~~ 609 (613)
|+++|+.||.++-.| +.|.+|+.
T Consensus 479 Ai~L~~~Sl~~~a~dp~tg~id~~ 502 (506)
T 3f8t_A 479 AAELVDWYLETAMQIPGGDEIRIS 502 (506)
T ss_dssp HHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHhcCCCCCCeEeEE
Confidence 999999999999999 99999985
No 4
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.64 E-value=1.3e-18 Score=196.98 Aligned_cols=230 Identities=25% Similarity=0.351 Sum_probs=156.5
Q ss_pred CcccchHHHHHHHHHHHhhhhcchhhhhhccccCCccchhhHHHHHHHHhhhCCcccC---CCCCCCcceeecCCCCCCc
Q psy2640 355 ATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHST---NGSRGDAHVLIVGDPGLGK 431 (613)
Q Consensus 355 ~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~~~~k~gl~l~l~GG~~~~---~~~rg~idil~vgdpGtgK 431 (613)
...+|.++++.+.+++ ...+.++.+..+.+|.|+|++.+|.++++.++||..+. ...||++|+|++|+||+||
T Consensus 265 ~~~~t~~~~~~i~~~~----~~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGK 340 (595)
T 3f9v_A 265 EVIISEEDEKKIKDLA----KDPWIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAK 340 (595)
T ss_dssp CCCCTTSTHHHHHTTS----STTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTH
T ss_pred cCCCCHHHHHHHHHHh----hCcHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHH
Confidence 3457888888887776 45688999999999999999999999999999997442 3458999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhcCC-----ccc---------------cHHHHHHHHHhC--------CCCHHHHHHHH
Q psy2640 432 SQMLHACCAAKKFISVLQKKAEVQSR-----SVF---------------TVTELKQLATSA--------NISVDNFFTFL 483 (613)
Q Consensus 432 Sq~l~~~~~~~~~~~~l~~~~~~~~~-----~~~---------------t~~el~~~a~~~--------gi~~~~~~~~i 483 (613)
|++.++..... ........ ..+ ..+. ...|... .++.+....++
T Consensus 341 T~LAr~la~~~-------~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~-l~~A~~gil~IDEid~l~~~~q~~Ll 412 (595)
T 3f9v_A 341 SQMLQFISRVA-------PRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGA-LVLADGGIAVIDEIDKMRDEDRVAIH 412 (595)
T ss_dssp HHHHHSSSTTC-------SCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECH-HHHHSSSEECCTTTTCCCSHHHHHHH
T ss_pred HHHHHHHHHhC-------CCceecCCCccccccccceeeeccccccccccCCe-eEecCCCcEEeehhhhCCHhHhhhhH
Confidence 99854432111 00000000 000 0011 1122221 12333446777
Q ss_pred HHHhhCCcEEecCCceEEEechhhHHHHHhhhhhhccccccchhhhcccchhhhccccccccccccCc------------
Q psy2640 484 TSLNDQGFLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLN------------ 551 (613)
Q Consensus 484 ~~L~~~G~i~~~g~~~~~l~~~~~~~~i~~~k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------ 551 (613)
+.|+++.+.+.+.+....+..++-++...+... ...+...++.+|..|++++++|||.++.+.+.++
T Consensus 413 ~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~-G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~ 491 (595)
T 3f9v_A 413 EAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKF-GRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILD 491 (595)
T ss_dssp HHHHSSSEEEESSSSEEEECCCCEEEEEECCTT-CCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHT
T ss_pred HHHhCCEEEEecCCcEEEecCceEEEEEcCCcC-CccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 888777666666666677665554444444432 2334455667788999999999997666554221
Q ss_pred --------------------------------h------hHHHHH------------------HHHHHHHHHHhhccccc
Q psy2640 552 --------------------------------D------QGFLLK------------------KGKQLYQLMSARAKCEL 575 (613)
Q Consensus 552 --------------------------------~------~~~y~~------------------l~esLiRLseArAkl~l 575 (613)
+ ..||.. ..++|||||+|+|+|++
T Consensus 492 ~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~ 571 (595)
T 3f9v_A 492 VHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMAL 571 (595)
T ss_dssp TTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTS
T ss_pred HhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhC
Confidence 0 334443 34779999999999999
Q ss_pred ccccChhHHHHHHHHhhhcchh
Q psy2640 576 REEASKQDAQDVIDIMKWSLID 597 (613)
Q Consensus 576 re~vt~~Da~~vv~im~~s~~~ 597 (613)
|+.||.+|+.+|+.+|+.||-+
T Consensus 572 ~~~V~~~dv~~Ai~l~~~sl~~ 593 (595)
T 3f9v_A 572 KAEVTREDAERAINIMRLFLES 593 (595)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999965
No 5
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.49 E-value=2e-13 Score=142.47 Aligned_cols=260 Identities=16% Similarity=0.106 Sum_probs=181.2
Q ss_pred HhhhccchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhhhhh-cce-EEE-ecccccccCceEEEEeeC-CC
Q psy2640 33 EIEERRCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHY-IIS-VYV-CGNTSTTSGLTVTLSREG-GG 108 (613)
Q Consensus 33 ~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~~~~-~r~-~~~-~g~~~s~~gLta~~~~~~-~g 108 (613)
++.+...+..++++.+...+.+|.. =-+.|.|+.++..|..+++.. ... +++ +....+...+++....++ .|
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~~~~----vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~ 99 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICTGGH----ILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKG 99 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHHTCC----EEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTT
T ss_pred HhccceeCcHHHHHHHHHHHHcCCe----EEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCC
Confidence 4556677888999888888776531 126899999998887665542 222 223 333444455777766666 78
Q ss_pred CeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhc
Q psy2640 109 DFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAME 188 (613)
Q Consensus 109 ~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eame 188 (613)
.|.+.+|.+ .+|+++|||++.++. ..+.+|+++|+
T Consensus 100 ~~~~~~g~l---~~~vl~iDEi~~~~~------------------------------------------~~~~~Ll~~l~ 134 (331)
T 2r44_A 100 NFEVKKGPV---FSNFILADEVNRSPA------------------------------------------KVQSALLECMQ 134 (331)
T ss_dssp EEEEEECTT---CSSEEEEETGGGSCH------------------------------------------HHHHHHHHHHH
T ss_pred ceEeccCcc---cccEEEEEccccCCH------------------------------------------HHHHHHHHHHh
Confidence 888888877 479999999999987 47889999999
Q ss_pred CCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcC
Q psy2640 189 QQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSG 268 (613)
Q Consensus 189 qq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~ 268 (613)
++.+++ .|....+|.++.++|++||... .+...+++++++||++.+. ++.|+.+.-..+..+.....
T Consensus 135 ~~~~~~--~g~~~~~~~~~~viat~np~~~--------~~~~~l~~~l~~Rf~~~i~-i~~p~~~~~~~il~~~~~~~-- 201 (331)
T 2r44_A 135 EKQVTI--GDTTYPLDNPFLVLATQNPVEQ--------EGTYPLPEAQVDRFMMKIH-LTYLDKESELEVMRRVSNMN-- 201 (331)
T ss_dssp HSEEEE--TTEEEECCSSCEEEEEECTTCC--------SCCCCCCHHHHTTSSEEEE-CCCCCHHHHHHHHHHHHCTT--
T ss_pred cCceee--CCEEEECCCCEEEEEecCCCcc--------cCcccCCHHHHhheeEEEE-cCCCCHHHHHHHHHhccccC--
Confidence 999998 4778899999999999999741 1223689999999976544 45566544444333322211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHh
Q psy2640 269 FQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRK 348 (613)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~ 348 (613)
. . ......++.+.+.. +++...+..+++++.+++.+.+..+|.
T Consensus 202 --~----------------~---------------~~~~~~~~~~~i~~----~~~~~~~v~~~~~~~~~i~~~~~~~r~ 244 (331)
T 2r44_A 202 --F----------------N---------------YQVQKIVSKNDVLE----IRNEINKVTISESLEKYIIELVFATRF 244 (331)
T ss_dssp --C----------------C---------------CCCCCCSCHHHHHH----HHHHHHTCBCCHHHHHHHHHHHHHHHS
T ss_pred --c----------------c---------------hhccccCCHHHHHH----HHHHhccCCCCHHHHHHHHHHHHHHhc
Confidence 0 0 00112244444443 343332458999999999999999987
Q ss_pred ccCCC-------CCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCccc
Q psy2640 349 HHHSV-------DATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIF 392 (613)
Q Consensus 349 ~~~~~-------~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~ 392 (613)
..... ...++|+|.+..++|+++++ |.++.++.|+.+|+.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~-A~l~g~~~v~~~dv~~~~ 294 (331)
T 2r44_A 245 PAEYGLEAEASYILYGASTRAAINLNRVAKAM-AFFNNRDYVLPEDIKEVA 294 (331)
T ss_dssp GGGGTCHHHHHHEEECCCHHHHHHHHHHHHHH-HHHTTCSBCCHHHHHHHH
T ss_pred cccccccccccccccCcChhHHHHHHHHHHHH-HHHcCCCCCCHHHHHHHH
Confidence 54210 23567999999999999999 999999999988875443
No 6
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.46 E-value=1.6e-13 Score=143.20 Aligned_cols=265 Identities=17% Similarity=0.116 Sum_probs=184.0
Q ss_pred ccchHHhhhccchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhhhh-hcceEEEecc---------------
Q psy2640 28 LYNVAEIEERRCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHH-YIISVYVCGN--------------- 91 (613)
Q Consensus 28 lYd~~~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~~~-~~r~~~~~g~--------------- 91 (613)
-|++..| .+...+++++....+.+....+ -+.|.|+.++..|.-+++. .++..+..+.
T Consensus 20 ~~~f~~i----~G~~~~~~~l~~~~~~~~~~~v--Ll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (350)
T 1g8p_A 20 VFPFSAI----VGQEDMKLALLLTAVDPGIGGV--LVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWAT 93 (350)
T ss_dssp CCCGGGS----CSCHHHHHHHHHHHHCGGGCCE--EEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCC
T ss_pred CCCchhc----cChHHHHHHHHHHhhCCCCceE--EEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhh
Confidence 3555544 4556677776666654322211 2689999999888777664 3443333331
Q ss_pred ------------------cccccCceEEEEeeC---CCCeeecCceeecccCceeccccccCCCcccccccchhcccccc
Q psy2640 92 ------------------TSTTSGLTVTLSREG---GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRG 150 (613)
Q Consensus 92 ------------------~~s~~gLta~~~~~~---~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g 150 (613)
+.+...|.+...... ++.+.+.+|.+..|++|+++|||++.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~--------------- 158 (350)
T 1g8p_A 94 VLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED--------------- 158 (350)
T ss_dssp CSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH---------------
T ss_pred hhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH---------------
Confidence 111222222211111 24467788999999999999999999988
Q ss_pred cccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhc
Q psy2640 151 ITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENL 230 (613)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i 230 (613)
..+.+|+.+||++.+.+...|.....|.++.+++++||..+
T Consensus 159 ---------------------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~------------ 199 (350)
T 1g8p_A 159 ---------------------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG------------ 199 (350)
T ss_dssp ---------------------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSC------------
T ss_pred ---------------------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCC------------
Confidence 46789999999999999999999999999999999999532
Q ss_pred cccccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCC
Q psy2640 231 RMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLI 310 (613)
Q Consensus 231 ~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i 310 (613)
.++++|++||++.+.+...++.+....+..+.+..... ...+.+. ...
T Consensus 200 ~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~-----------------------~~~~~~~---------~~~ 247 (350)
T 1g8p_A 200 DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDAD-----------------------PKAFLEE---------WRP 247 (350)
T ss_dssp CCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHC-----------------------HHHHHHH---------HHH
T ss_pred CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccC-----------------------chhhccc---------ccc
Confidence 47889999999877766555666666776666543210 0000000 012
Q ss_pred CHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCc
Q psy2640 311 PAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPS 390 (613)
Q Consensus 311 ~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~ 390 (613)
+...++++|.+++.......+++++.+.|.+++-..+. -++|.+..+++.+.++ |.++.++.|+.+|+.+
T Consensus 248 ~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~---------~~~R~~~~ll~~a~~~-A~~~~~~~v~~~~v~~ 317 (350)
T 1g8p_A 248 KDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS---------DGLRGELTLLRSARAL-AALEGATAVGRDHLKR 317 (350)
T ss_dssp HHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS---------CSHHHHHHHHHHHHHH-HHHTTCSBCCHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC---------CCccHHHHHHHHHHHH-HHHcCCCcCCHHHHHH
Confidence 45678899999987653458999999999998876541 1689999999999999 9999988898888865
Q ss_pred cchh
Q psy2640 391 IFGH 394 (613)
Q Consensus 391 I~~~ 394 (613)
++..
T Consensus 318 a~~~ 321 (350)
T 1g8p_A 318 VATM 321 (350)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 7
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.45 E-value=1.6e-12 Score=144.09 Aligned_cols=264 Identities=17% Similarity=0.142 Sum_probs=178.9
Q ss_pred HhhhccchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhhhhhcce----EEEecccccccCceEEEEee--C
Q psy2640 33 EIEERRCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHYIIS----VYVCGNTSTTSGLTVTLSRE--G 106 (613)
Q Consensus 33 ~I~~~~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~~~~~r~----~~~~g~~~s~~gLta~~~~~--~ 106 (613)
++.+...|..++++++...+++|..- -|.|.|+.++..|.-+++..... ++.....++...|++...-. .
T Consensus 19 ~l~~~ivGq~~~i~~l~~al~~~~~V----LL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~ 94 (500)
T 3nbx_X 19 SLEKGLYERSHAIRLCLLAALSGESV----FLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALK 94 (500)
T ss_dssp HHHTTCSSCHHHHHHHHHHHHHTCEE----EEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCee----EeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHh
Confidence 67888999999999999888876532 26799999999998887765432 44444444444444321111 1
Q ss_pred -CCCee-ecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHH
Q psy2640 107 -GGDFA-LEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALL 184 (613)
Q Consensus 107 -~g~~~-le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 184 (613)
.|.|. ...|. ++..++++|||+++++. ..+.+|+
T Consensus 95 ~~g~~~~~~~g~--l~~~~IL~IDEI~r~~~------------------------------------------~~q~~LL 130 (500)
T 3nbx_X 95 DEGRYERLTSGY--LPEAEIVFLDEIWKAGP------------------------------------------AILNTLL 130 (500)
T ss_dssp -----CBCCTTS--GGGCSEEEEESGGGCCH------------------------------------------HHHHHHH
T ss_pred hchhHHhhhccC--CCcceeeeHHhHhhhcH------------------------------------------HHHHHHH
Confidence 23332 33333 34567899999999987 4789999
Q ss_pred hhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHH
Q psy2640 185 EAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMA 264 (613)
Q Consensus 185 eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~ 264 (613)
++|+++.+++ .|....+|.++ +++|+||... ...+.+++++|| ++.+.++.|++..+.. .|+.
T Consensus 131 ~~lee~~v~i--~G~~~~~~~~~-iI~ATN~lpe----------~~~~~~aLldRF-~~~i~v~~p~~~ee~~---~IL~ 193 (500)
T 3nbx_X 131 TAINERQFRN--GAHVEKIPMRL-LVAASNELPE----------ADSSLEALYDRM-LIRLWLDKVQDKANFR---SMLT 193 (500)
T ss_dssp HHHHSSEEEC--SSSEEECCCCE-EEEEESSCCC----------TTCTTHHHHTTC-CEEEECCSCCCHHHHH---HHHT
T ss_pred HHHHHHhccC--CCCcCCcchhh-hhhccccCCC----------ccccHHHHHHHH-HHHHHHHHhhhhhhHH---HHHh
Confidence 9999999988 58888999996 6677786421 223557999999 5566667777643321 2333
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHH
Q psy2640 265 SLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYL 344 (613)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv 344 (613)
.+..... . +....+.++.+.+..+..++++ ..+++++.+++.+.+.
T Consensus 194 ~~~~~~~--------------------~----------~~~~~~~~~~e~l~~~~~~~~~----v~v~d~v~e~i~~l~~ 239 (500)
T 3nbx_X 194 SQQDEND--------------------N----------PVPDALQVTDEEYERWQKEIGE----ITLPDHVFELIFMLRQ 239 (500)
T ss_dssp CCCCTTS--------------------C----------CSCTTTSBCHHHHHHHHHHHTT----CBCCHHHHHHHHHHHH
T ss_pred cccccCC--------------------C----------CCCccceecHHHHHHHHhcCCc----ccCchHHHHHHHHHHH
Confidence 2211000 0 0011234777888888777754 5789999999988887
Q ss_pred HHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccC---CccchhhHHHH
Q psy2640 345 NLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLC---PSIFGHEMVKA 399 (613)
Q Consensus 345 ~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~---~~I~~~~~~k~ 399 (613)
.+|... ....+|+|.+++++|+|+|+ |.++.++.|+++|+ +.++.|...+.
T Consensus 240 ~lr~~r---~~~~iS~R~~~~llr~A~A~-A~l~gr~~Vt~eDv~~a~~vL~hr~~~~ 293 (500)
T 3nbx_X 240 QLDKLP---DAPYVSDRRWKKAIRLLQAS-AFFSGRSAVAPVDLILLKDCLWYDAQSL 293 (500)
T ss_dssp HHHHCS---SSCCCCHHHHHHHHHHHHHH-HHHTTCSBCCGGGGGGGGGTSCSSHHHH
T ss_pred HhhcCC---CCCccchhHHHHHHHHHHHH-HhhcCCccccchHHHHHHhhhhcCchHh
Confidence 776533 23457999999999999999 99999999999998 44455554433
No 8
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.95 E-value=4.2e-10 Score=127.39 Aligned_cols=165 Identities=22% Similarity=0.198 Sum_probs=124.4
Q ss_pred eecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCC
Q psy2640 111 ALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQ 190 (613)
Q Consensus 111 ~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq 190 (613)
.+++|++..|++|+++|||++.|+. ..+..|+.+||++
T Consensus 191 ~i~~g~~~~a~~gvL~LDEi~~l~~------------------------------------------~~q~~Ll~~Le~~ 228 (604)
T 3k1j_A 191 RVEPGMIHRAHKGVLFIDEIATLSL------------------------------------------KMQQSLLTAMQEK 228 (604)
T ss_dssp GEECCHHHHTTTSEEEETTGGGSCH------------------------------------------HHHHHHHHHHHHS
T ss_pred cccCceeeecCCCEEEEechhhCCH------------------------------------------HHHHHHHHHHHcC
Confidence 3689999999999999999999987 4789999999999
Q ss_pred eEEEecccc----------eeecCCcceeecccCCCCCCCCCCccchhhccccccccccccE---EEEecCCCChhhhHH
Q psy2640 191 SISIAKASV----------VCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDL---VFILLDNPDEHLDTL 257 (613)
Q Consensus 191 ~isi~kagi----------~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDL---i~~l~d~~~~~~d~~ 257 (613)
++.+. |. ...+|.++-|++++||. ..-.++++|++||++ ...+ +...
T Consensus 229 ~~~~~--g~~~~~~~~~l~~~~~p~~~~vI~atn~~-----------~~~~l~~~l~~R~~v~~i~i~l-~~~~------ 288 (604)
T 3k1j_A 229 KFPIT--GQSEMSSGAMVRTEPVPCDFVLVAAGNLD-----------TVDKMHPALRSRIRGYGYEVYM-RTTM------ 288 (604)
T ss_dssp EECCB--CSCTTSGGGGCBCSCEECCCEEEEEECHH-----------HHHHSCHHHHHHHHHHSEEEEC-CSEE------
T ss_pred cEEec--ccccccccccCCCCccceeEEEEEecCHH-----------HHhhcCHHHHHHhhccceEeec-cccc------
Confidence 99886 33 45778999999999983 112478999999973 2221 1100
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhc----CCCcCCh
Q psy2640 258 LSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYV----SKPELST 333 (613)
Q Consensus 258 la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~----~~P~Ls~ 333 (613)
.-..+.++.|+.+..+.+ ..|.+++
T Consensus 289 ---------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~ls~ 317 (604)
T 3k1j_A 289 ---------------------------------------------------PDTIENRRKLVQFVAQEVKRDGKIPHFTK 317 (604)
T ss_dssp ---------------------------------------------------ECCHHHHHHHHHHHHHHHHHHCSSCCBBH
T ss_pred ---------------------------------------------------cCCHHHHHHHHHHHHHHHhhccCcccCCH
Confidence 012355666666554432 1478999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCccc
Q psy2640 334 EAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIF 392 (613)
Q Consensus 334 eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~ 392 (613)
+|.+.|..+|...- .....+++++|+++.++|.|.++ |+.+.++.|+.+|+.+++
T Consensus 318 eAl~~Li~~~~r~~---g~r~~l~~~~R~l~~llr~A~~~-A~~~~~~~I~~edv~~A~ 372 (604)
T 3k1j_A 318 EAVEEIVREAQKRA---GRKGHLTLRLRDLGGIVRAAGDI-AVKKGKKYVEREDVIEAV 372 (604)
T ss_dssp HHHHHHHHHHHHTT---CSTTEEECCHHHHHHHHHHHHHH-HHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHhhhh---ccccccccCHHHHHHHHHHHHHH-HHhcCcccccHHHHHHHH
Confidence 99999999886332 12235678999999999999999 999999999999985554
No 9
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.98 E-value=9e-06 Score=86.02 Aligned_cols=124 Identities=17% Similarity=0.106 Sum_probs=57.1
Q ss_pred ccCCchhhhhHHHHhhhhhc--ceEEEecccccccCceEEEEeeC-CCCeeecCceeecccCceeccccccCCCcccccc
Q psy2640 64 LSNEPQHTINCLGLAMHHYI--ISVYVCGNTSTTSGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNG 140 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~~--r~~~~~g~~~s~~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~ 140 (613)
+.|.|+.++..+..+++... .-++++...-+..|+.+.-.+.. ++.+...+|.+..+.+|+++|||++++.....+.
T Consensus 77 l~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~ 156 (376)
T 1um8_A 77 LIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENR 156 (376)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-------
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCC
Confidence 67999999988877766543 22333333333334332211111 1112223455667889999999999998720000
Q ss_pred cchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCC
Q psy2640 141 MLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANP 215 (613)
Q Consensus 141 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP 215 (613)
-.+ +-+. + ...+.+|+..||.+.++++..|.....+..+.++++.|+
T Consensus 157 ~~~------~~~~----------------~------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~ 203 (376)
T 1um8_A 157 SIT------RDVS----------------G------EGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDI 203 (376)
T ss_dssp -----------------------------C------HHHHHHHHHHHHCCEEC---------------CEECTTC
T ss_pred cee------cccc----------------h------HHHHHHHHHHhhccceecccccccccCCcceEEEecCCe
Confidence 000 0000 0 025789999999999998888877777777777777776
No 10
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.90 E-value=0.00012 Score=75.69 Aligned_cols=114 Identities=23% Similarity=0.267 Sum_probs=71.7
Q ss_pred ccCCchhhhhHHHHhhhhhc--ceEEEecccccccCceEEEEeeCCCCeeecCceeecccCceeccccccCCCccccccc
Q psy2640 64 LSNEPQHTINCLGLAMHHYI--ISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGM 141 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~~--r~~~~~g~~~s~~gLta~~~~~~~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~ 141 (613)
+.|.|+.++..|..+++... .-+.+++......| .+.....-++++|+++|||++.|+.
T Consensus 60 l~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~vl~lDEi~~l~~------ 120 (338)
T 3pfi_A 60 FSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSG-------------DLAAILTNLSEGDILFIDEIHRLSP------ 120 (338)
T ss_dssp EECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHH-------------HHHHHHHTCCTTCEEEEETGGGCCH------
T ss_pred EECcCCCCHHHHHHHHHHHhCCCeEEecchhccchh-------------HHHHHHHhccCCCEEEEechhhcCH------
Confidence 67889999988877665432 12233222111110 0111111367899999999999987
Q ss_pred chhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecc------cceeecCCcceeecccCC
Q psy2640 142 LYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKA------SVVCSLPARTSVIAAANP 215 (613)
Q Consensus 142 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~ka------gi~~~l~ar~svlAaaNP 215 (613)
..+..|+.+|+++.+.+.-+ .+...+| ++.+++++|+
T Consensus 121 ------------------------------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~ 163 (338)
T 3pfi_A 121 ------------------------------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTR 163 (338)
T ss_dssp ------------------------------------HHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESC
T ss_pred ------------------------------------HHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCC
Confidence 46788999999998766422 2334455 6889999997
Q ss_pred CCCCCCCCccchhhccccccccccccEEEEe
Q psy2640 216 VGGHYNRAKTVAENLRMGQALLSRFDLVFIL 246 (613)
Q Consensus 216 ~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l 246 (613)
. -.++++|++|||.++.+
T Consensus 164 ~-------------~~l~~~L~~R~~~~i~l 181 (338)
T 3pfi_A 164 A-------------GMLSNPLRDRFGMQFRL 181 (338)
T ss_dssp G-------------GGSCHHHHTTCSEEEEC
T ss_pred c-------------cccCHHHHhhcCEEeeC
Confidence 3 12778899999876555
No 11
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.76 E-value=7.4e-05 Score=74.79 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=80.5
Q ss_pred ccCCchhhhhHHHHhhhhh-cc----eEEEecccccccC----ceEEEEeeC-CCCeeecCceeecccCceeccccccCC
Q psy2640 64 LSNEPQHTINCLGLAMHHY-II----SVYVCGNTSTTSG----LTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKM 133 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~-~r----~~~~~g~~~s~~g----Lta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm 133 (613)
+.|.|+.++..+.-++|.. ++ -++++...-+... |... .+.. +|......|.+..|++|+++|||++.+
T Consensus 34 l~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~-~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l 112 (265)
T 2bjv_A 34 IIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGH-EAGAFTGAQKRHPGRFERADGGTLFLDELATA 112 (265)
T ss_dssp EECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCC-C---------CCCCHHHHTTTSEEEEESGGGS
T ss_pred EECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCC-cccccccccccccchhhhcCCcEEEEechHhc
Confidence 5788999998888777754 21 2344322211110 0000 0111 233333567777899999999999999
Q ss_pred CcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeeccc
Q psy2640 134 SAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAA 213 (613)
Q Consensus 134 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaa 213 (613)
+. ..+..|+..|+++.+ ...|.....+.++.+++++
T Consensus 113 ~~------------------------------------------~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~~iI~at 148 (265)
T 2bjv_A 113 PM------------------------------------------MVQEKLLRVIEYGEL--ERVGGSQPLQVNVRLVCAT 148 (265)
T ss_dssp CH------------------------------------------HHHHHHHHHHHHCEE--CCCCC--CEECCCEEEEEE
T ss_pred CH------------------------------------------HHHHHHHHHHHhCCe--ecCCCcccccCCeEEEEec
Confidence 87 467889999999975 4556666677888999999
Q ss_pred CCCCCCCCCCccchhhccccccccccccEEEE
Q psy2640 214 NPVGGHYNRAKTVAENLRMGQALLSRFDLVFI 245 (613)
Q Consensus 214 NP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~ 245 (613)
|+... ...+.-.+.+.|++||+.+.+
T Consensus 149 n~~~~------~~~~~~~~~~~L~~Rl~~~~i 174 (265)
T 2bjv_A 149 NADLP------AMVNEGTFRADLLDALAFDVV 174 (265)
T ss_dssp SSCHH------HHHHHTSSCHHHHHHHCSEEE
T ss_pred CcCHH------HHHHcCCccHHHHHhhcCcEE
Confidence 98410 111223467889999975433
No 12
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.73 E-value=3.4e-05 Score=78.30 Aligned_cols=238 Identities=14% Similarity=0.104 Sum_probs=128.1
Q ss_pred hhhccchhhhHHHHhhhhhcccc-----hhhh-----hh--hccCCchhhhhHHHHhhhhh--cceEEEecccccccCce
Q psy2640 34 IEERRCYLVDIKVLMNDQIFNDQ-----WKTF-----LQ--NLSNEPQHTINCLGLAMHHY--IISVYVCGNTSTTSGLT 99 (613)
Q Consensus 34 I~~~~~~~~dvK~~i~~qlfgg~-----~k~~-----~~--~l~~~p~~~~~~l~la~~~~--~r~~~~~g~~~s~~gLt 99 (613)
+.....|+.++++.+...+.... +..+ +. -+.|.|+.++..+..+++.. ..-+++++...+..|..
T Consensus 13 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~ 92 (310)
T 1ofh_A 13 LDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYV 92 (310)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSG
T ss_pred HhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCcc
Confidence 44557788888888876665410 0000 11 16799999997777665543 22344444333322222
Q ss_pred EEEEeeCCC----CeeecCceeecc-cCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccc
Q psy2640 100 VTLSREGGG----DFALEAGALVLA-DQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRH 174 (613)
Q Consensus 100 a~~~~~~~g----~~~le~GalvLa-d~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 174 (613)
.. +..+ -+.-.+|++..+ .+|+++|||++++.....+ ..+ . .
T Consensus 93 ~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~----------------~~~--~------------~ 139 (310)
T 1ofh_A 93 GK---EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY----------------SGA--D------------V 139 (310)
T ss_dssp GG---STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC----------------CSS--H------------H
T ss_pred Cc---cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc----------------ccc--c------------h
Confidence 10 0000 011113444444 4899999999999872100 000 0 0
Q ss_pred cchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhh
Q psy2640 175 TMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHL 254 (613)
Q Consensus 175 ~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~ 254 (613)
.....+..|+..||++.+... .|. .-+.++.++++.|+... ....+++++++||++++ -+..++.+.
T Consensus 140 ~~~~~~~~Ll~~le~~~~~~~-~~~--~~~~~~~~i~~~~~~~~---------~~~~l~~~l~~R~~~~i-~~~~~~~~~ 206 (310)
T 1ofh_A 140 SREGVQRDLLPLVEGSTVSTK-HGM--VKTDHILFIASGAFQVA---------RPSDLIPELQGRLPIRV-ELTALSAAD 206 (310)
T ss_dssp HHHHHHHHHHHHHHCCEEEET-TEE--EECTTCEEEEEECCSSS---------CGGGSCHHHHHTCCEEE-ECCCCCHHH
T ss_pred hHHHHHHHHHHHhcCCeEecc-ccc--ccCCcEEEEEcCCcccC---------CcccCCHHHHhhCCceE-EcCCcCHHH
Confidence 000126789999998877653 332 23556778888775311 11257889999999544 445555421
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhh-hcCCCcCCh
Q psy2640 255 DTLLSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARK-YVSKPELST 333 (613)
Q Consensus 255 d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~-~~~~P~Ls~ 333 (613)
+.. ++..+ +. .++++|...++. .. .+.+++
T Consensus 207 ---~~~-il~~~-------------------------------------------~~-~~~~~~~~~~~~~~~-~~~~~~ 237 (310)
T 1ofh_A 207 ---FER-ILTEP-------------------------------------------HA-SLTEQYKALMATEGV-NIAFTT 237 (310)
T ss_dssp ---HHH-HHHSS-------------------------------------------TT-CHHHHHHHHHHHTTC-EEEECH
T ss_pred ---HHH-HHHhh-------------------------------------------HH-HHHHHHHHHHHhcCC-eeccCH
Confidence 111 12111 00 245555555543 22 457999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHH
Q psy2640 334 EAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQ 371 (613)
Q Consensus 334 eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLse 371 (613)
++.+.|..+.-..+.... .-.+|++..+++-+-
T Consensus 238 ~a~~~l~~~~~~~~~~~~-----~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 238 DAVKKIAEAAFRVNEKTE-----NIGARRLHTVMERLM 270 (310)
T ss_dssp HHHHHHHHHHHHHHHHSC-----CCTTHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhhccccc-----ccCcHHHHHHHHHHH
Confidence 999999987765543211 136788888877653
No 13
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.43 E-value=0.00055 Score=70.59 Aligned_cols=131 Identities=21% Similarity=0.240 Sum_probs=84.3
Q ss_pred ccCCchhhhhHHHHhhhhh-cce----EEEeccccccc----CceEEEEeeC-CCCeeecCceeecccCceeccccccCC
Q psy2640 64 LSNEPQHTINCLGLAMHHY-IIS----VYVCGNTSTTS----GLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKM 133 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~-~r~----~~~~g~~~s~~----gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm 133 (613)
+.|.|+.++..+.-++|.. +|. ++++....... -|.+. .+.. +|...-..|.+..|++|+++|||++.|
T Consensus 30 i~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~-~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l 108 (304)
T 1ojl_A 30 IHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGH-EKGAFTGADKRREGRFVEADGGTLFLDEIGDI 108 (304)
T ss_dssp EESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCC-CSSCCC---CCCCCHHHHHTTSEEEEESCTTC
T ss_pred EECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCc-cccccCchhhhhcCHHHhcCCCEEEEeccccC
Confidence 6788999998888888763 222 23322211110 01100 0111 344445678888999999999999999
Q ss_pred CcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeeccc
Q psy2640 134 SAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAA 213 (613)
Q Consensus 134 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaa 213 (613)
+. ..+..|+..|+++.+ ...|.....+..+.|++|+
T Consensus 109 ~~------------------------------------------~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~riI~at 144 (304)
T 1ojl_A 109 SP------------------------------------------LMQVRLLRAIQEREV--QRVGSNQTISVDVRLIAAT 144 (304)
T ss_dssp CH------------------------------------------HHHHHHHHHHHSSBC--CBTTBCCCCBCCCEEEEEE
T ss_pred CH------------------------------------------HHHHHHHHHHhcCEe--eecCCcccccCCeEEEEec
Confidence 87 367889999999886 4567777888899999999
Q ss_pred CCCCCCCCCCccchhhccccccccccccEEEE
Q psy2640 214 NPVGGHYNRAKTVAENLRMGQALLSRFDLVFI 245 (613)
Q Consensus 214 NP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~ 245 (613)
|+. .. ...+.-.+.+.|++||..+.+
T Consensus 145 n~~-----l~-~~v~~g~fr~~L~~Rl~~~~i 170 (304)
T 1ojl_A 145 HRD-----LA-EEVSAGRFRQDLYYRLNVVAI 170 (304)
T ss_dssp SSC-----HH-HHHHHTSSCHHHHHHHSSEEE
T ss_pred Ccc-----HH-HHHHhCCcHHHHHhhcCeeEE
Confidence 974 10 111223466788999874433
No 14
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.35 E-value=0.0021 Score=83.29 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=93.8
Q ss_pred cccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEeccc
Q psy2640 119 LADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKAS 198 (613)
Q Consensus 119 Lad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kag 198 (613)
...|..+|+|||+.++.... +.++..-..++++|.++..++.--|
T Consensus 695 ~~~Gaw~~~DE~nr~~~evL-----------------------------------s~l~~~l~~i~~al~~~~~~i~~~g 739 (2695)
T 4akg_A 695 TQIGAWGCFDEFNRLDEKVL-----------------------------------SAVSANIQQIQNGLQVGKSHITLLE 739 (2695)
T ss_dssp HHHTCEEEEETTTSSCHHHH-----------------------------------HHHHHHHHHHHHHHHHTCSEEECSS
T ss_pred HhcCCEeeehhhhhcChHHH-----------------------------------HHHHHHHHHHHHHHHcCCcEEeeCC
Confidence 35578999999999988200 1111234455889988887777778
Q ss_pred ceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCC
Q psy2640 199 VVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHS 278 (613)
Q Consensus 199 i~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~ 278 (613)
-...++-.|.|+++.||- |. +.-.||+.|..||= .+-.+.||. ..+++.++..+
T Consensus 740 ~~i~l~~~~~vfiT~NPg---y~------g~~eLP~~Lk~~Fr--~v~m~~Pd~---~~i~ei~l~s~------------ 793 (2695)
T 4akg_A 740 EETPLSPHTAVFITLNPG---YN------GRSELPENLKKSFR--EFSMKSPQS---GTIAEMILQIM------------ 793 (2695)
T ss_dssp SEEECCTTCEEEEEECCC---SS------SSCCCCHHHHTTEE--EEECCCCCH---HHHHHHHHHHH------------
T ss_pred cEEecCCCceEEEEeCCC---cc------CcccccHHHHhheE--EEEeeCCCH---HHHHHHHHHhc------------
Confidence 888999999999999993 32 34468999999992 333445543 22333333222
Q ss_pred CCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCccc
Q psy2640 279 TQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPV 358 (613)
Q Consensus 279 ~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~i 358 (613)
.+...+..+..+..+|..+|..-.......+
T Consensus 794 -------------------------------------------------Gf~~a~~la~kiv~~~~l~~e~ls~q~hydf 824 (2695)
T 4akg_A 794 -------------------------------------------------GFEDSKSLASKIVHFLELLSSKCSSMNHYHF 824 (2695)
T ss_dssp -------------------------------------------------HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCC
T ss_pred -------------------------------------------------CCCchHHHHHHHHHHHHHHHHHhCcCCcccc
Confidence 1222334445566667777765555566778
Q ss_pred chHHHHHHHHHHHh
Q psy2640 359 TTRQLESLVRLTQD 372 (613)
Q Consensus 359 T~R~LEsliRLseA 372 (613)
..|.+.++++.|-+
T Consensus 825 glRalksvL~~ag~ 838 (2695)
T 4akg_A 825 GLRTLKGVLRNCSP 838 (2695)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 88888888887643
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.29 E-value=0.016 Score=59.02 Aligned_cols=114 Identities=26% Similarity=0.325 Sum_probs=70.8
Q ss_pred ccCCchhhhhHHHHhhhhhc--ceEEEecccccccCceEEEEeeCCCCeeecCcee--ecccCceeccccccCCCccccc
Q psy2640 64 LSNEPQHTINCLGLAMHHYI--ISVYVCGNTSTTSGLTVTLSREGGGDFALEAGAL--VLADQGVCCIDEFDKMSAQHQN 139 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~~--r~~~~~g~~~s~~gLta~~~~~~~g~~~le~Gal--vLad~gv~ciDEfdkm~~~~~~ 139 (613)
+.|.|+.++..|..++|... .-+++++...+..+ ++ .+++ .++++|+++|||++.++.
T Consensus 43 l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~-----------~l---~~~l~~~~~~~~~l~lDEi~~l~~---- 104 (324)
T 1hqc_A 43 LFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG-----------DL---AAILANSLEEGDILFIDEIHRLSR---- 104 (324)
T ss_dssp EECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHH-----------HH---HHHHTTTCCTTCEEEETTTTSCCH----
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChH-----------HH---HHHHHHhccCCCEEEEECCccccc----
Confidence 67889999988887776532 22333332211100 00 0111 257899999999999987
Q ss_pred ccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEeccc-----ceeecCCcceeecccC
Q psy2640 140 GMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKAS-----VVCSLPARTSVIAAAN 214 (613)
Q Consensus 140 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kag-----i~~~l~ar~svlAaaN 214 (613)
..+..|+..|++..+.+--.. .+...+.++.+++++|
T Consensus 105 --------------------------------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~ 146 (324)
T 1hqc_A 105 --------------------------------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146 (324)
T ss_dssp --------------------------------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEES
T ss_pred --------------------------------------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCC
Confidence 367789999999987763111 1112234677888888
Q ss_pred CCCCCCCCCccchhhccccccccccccEEEEe
Q psy2640 215 PVGGHYNRAKTVAENLRMGQALLSRFDLVFIL 246 (613)
Q Consensus 215 P~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l 246 (613)
... .+.++|++||+.++.+
T Consensus 147 ~~~-------------~~~~~l~~R~~~~i~l 165 (324)
T 1hqc_A 147 RPG-------------LITAPLLSRFGIVEHL 165 (324)
T ss_dssp CCS-------------SCSCSTTTTCSCEEEC
T ss_pred Ccc-------------cCCHHHHhcccEEEec
Confidence 641 3567799999755544
No 16
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.13 E-value=6.8e-05 Score=78.94 Aligned_cols=151 Identities=14% Similarity=0.032 Sum_probs=68.4
Q ss_pred ccchhhhHHHHhhhhhcccc-------------hhhhhhhccCCchhhhhHHHHhhhhhcce--EEEecccccccCceEE
Q psy2640 37 RRCYLVDIKVLMNDQIFNDQ-------------WKTFLQNLSNEPQHTINCLGLAMHHYIIS--VYVCGNTSTTSGLTVT 101 (613)
Q Consensus 37 ~~~~~~dvK~~i~~qlfgg~-------------~k~~~~~l~~~p~~~~~~l~la~~~~~r~--~~~~g~~~s~~gLta~ 101 (613)
...|...+|+.+...+.... ++.-.=-+.|.|+.++..+.-+++..... +.+++..-+..|+.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 45667777777666553111 01011126789999998888777654321 2222222121222111
Q ss_pred EEeeC-CCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHH
Q psy2640 102 LSREG-GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQH 180 (613)
Q Consensus 102 ~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (613)
-.... ++-+.-.+|.+..+.+|+++|||+|++.....++.. .+.++ -...+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~------~~~~~----------------------~~~~~ 147 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSI------TRDVS----------------------GEGVQ 147 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---------CHHH----------------------HHHHH
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccccccc------ccccc----------------------hHHHH
Confidence 00000 111222234445678999999999999872110000 00000 00157
Q ss_pred HHHHhhhcCCeEEEecccceeecCCcceeecccCC
Q psy2640 181 QALLEAMEQQSISIAKASVVCSLPARTSVIAAANP 215 (613)
Q Consensus 181 ~al~eameqq~isi~kagi~~~l~ar~svlAaaNP 215 (613)
.+|+..||...+.+...|....-+..+.+++++|.
T Consensus 148 ~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~ 182 (363)
T 3hws_A 148 QALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKI 182 (363)
T ss_dssp HHHHHHHHCC----------------CCCCCTTSS
T ss_pred HHHHHHhcCceeeccCccccccCCCceEEEECCCc
Confidence 89999999766667555544444445556666665
No 17
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.05 E-value=0.00069 Score=68.86 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=70.9
Q ss_pred eeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEe
Q psy2640 116 ALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIA 195 (613)
Q Consensus 116 alvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~ 195 (613)
++..+.+|+++|||+++++. ..+..|+..|+++.+...
T Consensus 114 ~~~~~~~~vl~lDEi~~l~~------------------------------------------~~~~~Ll~~le~~~~~~~ 151 (311)
T 4fcw_A 114 AVRRRPYSVILFDAIEKAHP------------------------------------------DVFNILLQMLDDGRLTDS 151 (311)
T ss_dssp HHHHCSSEEEEEETGGGSCH------------------------------------------HHHHHHHHHHHHSEEECT
T ss_pred HHHhCCCeEEEEeChhhcCH------------------------------------------HHHHHHHHHHhcCEEEcC
Confidence 34456789999999999987 478899999999998843
Q ss_pred cccceeecCCcceeecccCCC-------CCCCCCCccchhhc------cccccccccccEEEEecCCCChhhhHHHHHHH
Q psy2640 196 KASVVCSLPARTSVIAAANPV-------GGHYNRAKTVAENL------RMGQALLSRFDLVFILLDNPDEHLDTLLSEHV 262 (613)
Q Consensus 196 kagi~~~l~ar~svlAaaNP~-------~g~~~~~~~~~e~i------~l~~~llsRFDLi~~l~d~~~~~~d~~la~~I 262 (613)
.|....++ ++.+++++|+- .+.......+.+.+ .+.++|++|||.++.+ ..++.++-..+..+.
T Consensus 152 -~~~~~~~~-~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~-~p~~~~~~~~i~~~~ 228 (311)
T 4fcw_A 152 -HGRTVDFR-NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVF-RPLTKEQIRQIVEIQ 228 (311)
T ss_dssp -TSCEEECT-TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEEC-CCCCHHHHHHHHHHH
T ss_pred -CCCEEECC-CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEe-CCCCHHHHHHHHHHH
Confidence 24333332 56699999982 11112222333333 5889999999987765 446666666666665
Q ss_pred HHh
Q psy2640 263 MAS 265 (613)
Q Consensus 263 l~~ 265 (613)
+..
T Consensus 229 l~~ 231 (311)
T 4fcw_A 229 MSY 231 (311)
T ss_dssp THH
T ss_pred HHH
Confidence 543
No 18
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.86 E-value=0.0018 Score=72.15 Aligned_cols=170 Identities=18% Similarity=0.182 Sum_probs=87.4
Q ss_pred hhccchhhhHHHHhhhhhc----ccchhhhhhhccCCchhhhhHHHHhhhhhc--ceEEEeccc-ccccCceEEEEeeCC
Q psy2640 35 EERRCYLVDIKVLMNDQIF----NDQWKTFLQNLSNEPQHTINCLGLAMHHYI--ISVYVCGNT-STTSGLTVTLSREGG 107 (613)
Q Consensus 35 ~~~~~~~~dvK~~i~~qlf----gg~~k~~~~~l~~~p~~~~~~l~la~~~~~--r~~~~~g~~-~s~~gLta~~~~~~~ 107 (613)
....+++.++|+.+...+. ....+--.=.+.|.|+.++..|..+++... ..+.++..+ .....+.....+ -.
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~-~i 158 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRT-YV 158 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHH-Hh
Confidence 3457888888887743321 111110001278999999988887766432 222222211 111111111000 01
Q ss_pred CCeeecCceee------cccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHH
Q psy2640 108 GDFALEAGALV------LADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQ 181 (613)
Q Consensus 108 g~~~le~Galv------Lad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (613)
| .-+|.+. ...++++++||++++...... +..+
T Consensus 159 g---~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~--------------------------------------~~~~ 197 (543)
T 3m6a_A 159 G---AMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRG--------------------------------------DPSS 197 (543)
T ss_dssp --------CHHHHHHTTCSSSEEEEEEESSSCC-----------------------------------------------
T ss_pred c---cCchHHHHHHHHhhccCCEEEEhhhhhhhhhhcc--------------------------------------CHHH
Confidence 1 1122221 237889999999999872100 1346
Q ss_pred HHHhhhcCCeE-EEecccceeecC-CcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHH
Q psy2640 182 ALLEAMEQQSI-SIAKASVVCSLP-ARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLS 259 (613)
Q Consensus 182 al~eameqq~i-si~kagi~~~l~-ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la 259 (613)
+|++.|+.... .+...+.....+ .++.+++++|+.. .++++|++||+. +-++.++.+.+..+.
T Consensus 198 ~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~-------------~l~~aL~~R~~v--i~~~~~~~~e~~~Il 262 (543)
T 3m6a_A 198 AMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA-------------TIPGPLRDRMEI--INIAGYTEIEKLEIV 262 (543)
T ss_dssp CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT-------------TSCHHHHHHEEE--EECCCCCHHHHHHHH
T ss_pred HHHHHHhhhhcceeecccCCeeecccceEEEeccCccc-------------cCCHHHHhhcce--eeeCCCCHHHHHHHH
Confidence 78888875432 233333333333 6788999999852 578999999974 356777776666655
Q ss_pred HH
Q psy2640 260 EH 261 (613)
Q Consensus 260 ~~ 261 (613)
.+
T Consensus 263 ~~ 264 (543)
T 3m6a_A 263 KD 264 (543)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 19
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.83 E-value=0.0069 Score=69.85 Aligned_cols=183 Identities=19% Similarity=0.204 Sum_probs=96.7
Q ss_pred cceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCC
Q psy2640 206 RTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTEN 285 (613)
Q Consensus 206 r~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~ 285 (613)
...+++++|+. ...+.+..+++|.+||+. +.++.|+.+.-..+-..+...+...
T Consensus 315 ~~~~I~at~~~--------~~~~~~~~d~aL~~Rf~~--i~v~~p~~~e~~~il~~l~~~~~~~---------------- 368 (758)
T 1r6b_X 315 KIRVIGSTTYQ--------EFSNIFEKDRALARRFQK--IDITEPSIEETVQIINGLKPKYEAH---------------- 368 (758)
T ss_dssp CCEEEEEECHH--------HHHCCCCCTTSSGGGEEE--EECCCCCHHHHHHHHHHHHHHHHHH----------------
T ss_pred CeEEEEEeCch--------HHhhhhhcCHHHHhCceE--EEcCCCCHHHHHHHHHHHHHHHHHh----------------
Confidence 34577777763 123345677889999983 5677787665555555544332000
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHH
Q psy2640 286 PNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLES 365 (613)
Q Consensus 286 ~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEs 365 (613)
....++.+.+..-..++..++..+.+++.+.+.+.......|..........++..+++.
T Consensus 369 --------------------~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~ 428 (758)
T 1r6b_X 369 --------------------HDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIES 428 (758)
T ss_dssp --------------------HTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHH
T ss_pred --------------------cCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHH
Confidence 011255677777777777777566788888888776655544322222233467776665
Q ss_pred HHHHHHhhh-hcch-----hhhhhccccCCccchhhHHHHHH----HHhhhCCcccCCCCCCCcceeecCCCCCCcchhh
Q psy2640 366 LVRLTQDIQ-AEPN-----LFKLLVNSLCPSIFGHEMVKAGL----LLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQML 435 (613)
Q Consensus 366 liRLseA~~-Ak~~-----l~~~v~~sd~~~I~~~~~~k~gl----~l~l~GG~~~~~~~rg~idil~vgdpGtgKSq~l 435 (613)
.+.--.... .++. ....+....-..++|++.....+ .....|. + ++.+-..++|+.|.||+||+.+.
T Consensus 429 ~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~-~--~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 429 VVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGL-G--HEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp HHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTC-S--CTTSCSEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhccc-C--CCCCCceEEEEECCCCCcHHHHH
Confidence 542210000 0110 00111222224566655443322 2222331 1 22223347899999999999984
Q ss_pred hH
Q psy2640 436 HA 437 (613)
Q Consensus 436 ~~ 437 (613)
++
T Consensus 506 ~~ 507 (758)
T 1r6b_X 506 VQ 507 (758)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 20
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.80 E-value=0.001 Score=76.87 Aligned_cols=105 Identities=13% Similarity=0.222 Sum_probs=74.4
Q ss_pred ceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEE
Q psy2640 115 GALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISI 194 (613)
Q Consensus 115 GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi 194 (613)
+++-.+++||+++||+++++. +....|+..|+++.++.
T Consensus 551 ~~~~~~~~~vl~lDEi~~~~~------------------------------------------~~~~~Ll~~le~~~~~~ 588 (758)
T 1r6b_X 551 DAVIKHPHAVLLLDEIEKAHP------------------------------------------DVFNILLQVMDNGTLTD 588 (758)
T ss_dssp HHHHHCSSEEEEEETGGGSCH------------------------------------------HHHHHHHHHHHHSEEEE
T ss_pred HHHHhCCCcEEEEeCccccCH------------------------------------------HHHHHHHHHhcCcEEEc
Confidence 344567899999999999987 47889999999999987
Q ss_pred ecccceeecCCcceeecccCCCCCC-------CCC---Cccchhhc--cccccccccccEEEEecCCCChhhhHHHHHHH
Q psy2640 195 AKASVVCSLPARTSVIAAANPVGGH-------YNR---AKTVAENL--RMGQALLSRFDLVFILLDNPDEHLDTLLSEHV 262 (613)
Q Consensus 195 ~kagi~~~l~ar~svlAaaNP~~g~-------~~~---~~~~~e~i--~l~~~llsRFDLi~~l~d~~~~~~d~~la~~I 262 (613)
.. |....+ .++.|++++||.... |.. ...+.+.+ .+.+++++|||.+ +....++.+.-..+..+.
T Consensus 589 ~~-g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~-i~~~~l~~~~~~~i~~~~ 665 (758)
T 1r6b_X 589 NN-GRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNI-IWFDHLSTDVIHQVVDKF 665 (758)
T ss_dssp TT-TEEEEC-TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEE-EECCCCCHHHHHHHHHHH
T ss_pred CC-CCEEec-CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcc-eeeCCCCHHHHHHHHHHH
Confidence 54 655555 678999999984211 110 01122222 6889999999987 666777776666666666
Q ss_pred HH
Q psy2640 263 MA 264 (613)
Q Consensus 263 l~ 264 (613)
+.
T Consensus 666 l~ 667 (758)
T 1r6b_X 666 IV 667 (758)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 21
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.64 E-value=0.0041 Score=71.85 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=66.1
Q ss_pred ecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecc
Q psy2640 118 VLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKA 197 (613)
Q Consensus 118 vLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~ka 197 (613)
-.+.+|++++||+++++. ..+..|+..|+++.++...
T Consensus 576 ~~~~~~vl~lDEi~~~~~------------------------------------------~~~~~Ll~~le~g~~~~~~- 612 (758)
T 3pxi_A 576 RRKPYSVVLLDAIEKAHP------------------------------------------DVFNILLQVLEDGRLTDSK- 612 (758)
T ss_dssp HHCSSSEEEEECGGGSCH------------------------------------------HHHHHHHHHHHHSBCC----
T ss_pred HhCCCeEEEEeCccccCH------------------------------------------HHHHHHHHHhccCeEEcCC-
Confidence 456789999999999987 4788999999999987753
Q ss_pred cceeecCCcceeecccCCCCCCCCCCccchhh--ccccccccccccEEEEecCCCChhhhHHHHHHHHHh
Q psy2640 198 SVVCSLPARTSVIAAANPVGGHYNRAKTVAEN--LRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMAS 265 (613)
Q Consensus 198 gi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~--i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~ 265 (613)
....-+.++.+++++|......+ .+.+. -.+.+.+++|||.+ +....++++.-..+..+.+..
T Consensus 613 -g~~~~~~~~~iI~ttn~~~~~~~---~~~~~~~~~f~p~l~~Rl~~~-i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 613 -GRTVDFRNTILIMTSNVGASEKD---KVMGELKRAFRPEFINRIDEI-IVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp ---CCBCTTCEEEEEESSSTTCCH---HHHHHHHHHSCHHHHTTSSEE-EECC--CHHHHHHHHHHHHHH
T ss_pred -CCEeccCCeEEEEeCCCChhhHH---HHHHHHHhhCCHHHHhhCCeE-EecCCCCHHHHHHHHHHHHHH
Confidence 33455678899999996432211 11111 12789999999974 445666665555666665543
No 22
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.50 E-value=0.017 Score=62.67 Aligned_cols=69 Identities=16% Similarity=0.023 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCc
Q psy2640 311 PAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPS 390 (613)
Q Consensus 311 ~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~ 390 (613)
+.+.+.+|+...-+.- ...+++++...|..+... -++|....+++.|.++ |..+.++.|+.+|+.+
T Consensus 367 ~~~e~~~iL~~~~~~~-~~~~~~~~~~~i~~~a~~------------g~~r~a~~ll~~a~~~-A~~~~~~~v~~~~v~~ 432 (456)
T 2c9o_A 367 TPQEMKQIIKIRAQTE-GINISEEALNHLGEIGTK------------TTLRYSVQLLTPANLL-AKINGKDSIEKEHVEE 432 (456)
T ss_dssp CHHHHHHHHHHHHHHH-TCCBCHHHHHHHHHHHHH------------SCHHHHHHTHHHHHHH-HHHTTCSSBCHHHHHH
T ss_pred CHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHccC------------CCHHHHHHHHHHHHHH-HhhcCCCccCHHHHHH
Confidence 3344555544322111 235677766666553311 1678888888888778 8888888888888865
Q ss_pred cch
Q psy2640 391 IFG 393 (613)
Q Consensus 391 I~~ 393 (613)
+++
T Consensus 433 ~~~ 435 (456)
T 2c9o_A 433 ISE 435 (456)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 23
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.40 E-value=0.016 Score=67.96 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=62.0
Q ss_pred ecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecc
Q psy2640 118 VLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKA 197 (613)
Q Consensus 118 vLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~ka 197 (613)
-.+.+|+++|||+++++. ..+..|+..|+.+.++-. .
T Consensus 657 ~~~~~~vl~lDEi~~l~~------------------------------------------~~~~~Ll~~l~~~~~~~~-~ 693 (854)
T 1qvr_A 657 RRRPYSVILFDEIEKAHP------------------------------------------DVFNILLQILDDGRLTDS-H 693 (854)
T ss_dssp HHCSSEEEEESSGGGSCH------------------------------------------HHHHHHHHHHTTTEECCS-S
T ss_pred HhCCCeEEEEecccccCH------------------------------------------HHHHHHHHHhccCceECC-C
Confidence 345679999999999987 478899999999998733 3
Q ss_pred cceeecCCcceeecccCCCCCCCC-----C--Cccchhh------ccccccccccccEEEEecCCCChhhhHHHHHHHH
Q psy2640 198 SVVCSLPARTSVIAAANPVGGHYN-----R--AKTVAEN------LRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVM 263 (613)
Q Consensus 198 gi~~~l~ar~svlAaaNP~~g~~~-----~--~~~~~e~------i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il 263 (613)
|....+ .++.|++++|+...... . ...+.+. -.+.+.|++|||.+++. ..++.++-..|..+.+
T Consensus 694 g~~vd~-~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~-~pl~~edi~~i~~~~l 770 (854)
T 1qvr_A 694 GRTVDF-RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVF-RPLTKEQIRQIVEIQL 770 (854)
T ss_dssp SCCEEC-TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBC-CCCCHHHHHHHHHHHH
T ss_pred CCEecc-CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeC-CCCCHHHHHHHHHHHH
Confidence 444444 35679999997311100 0 0012222 24678888888865544 2344444444444433
No 24
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.40 E-value=0.16 Score=66.76 Aligned_cols=53 Identities=19% Similarity=0.306 Sum_probs=35.0
Q ss_pred cceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHH
Q psy2640 198 SVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMA 264 (613)
Q Consensus 198 gi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~ 264 (613)
|-...++-.|.|+++.||- | .+.-.||+.|-+||=- +-...||. ..+++.++.
T Consensus 699 G~~i~l~~~~~vfiTmNpg---Y------~gr~eLP~nLk~lFr~--v~m~~Pd~---~~i~ei~L~ 751 (3245)
T 3vkg_A 699 GKNISLHQDMGIFVTMNPG---Y------AGRSNLPDNLKKLFRS--MAMIKPDR---EMIAQVMLY 751 (3245)
T ss_dssp --CEECCTTCEEEECBCCC---G------GGCCCSCHHHHTTEEE--EECCSCCH---HHHHHHHHH
T ss_pred CCEEeecCCeEEEEEeCCC---c------cCcccChHHHHhhcEE--EEEeCCCH---HHHHHHHHH
Confidence 6667899999999999994 2 2334799999999932 44455554 345555444
No 25
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.22 E-value=0.046 Score=59.34 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=87.6
Q ss_pred ceeecc-cCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEE
Q psy2640 115 GALVLA-DQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSIS 193 (613)
Q Consensus 115 GalvLa-d~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~is 193 (613)
+|+-.| .+|++++||+||+..... ..+|-|++ | ..+++|++.||..+++
T Consensus 243 ~ai~~ae~~~il~~DEidki~~~~~--------~~~~D~s~----------------e------gvq~aLL~~le~~~~~ 292 (444)
T 1g41_A 243 KAIDAVEQNGIVFIDEIDKICKKGE--------YSGADVSR----------------E------GVQRDLLPLVEGSTVS 292 (444)
T ss_dssp HHHHHHHHHCEEEEETGGGGSCCSS--------CSSSHHHH----------------H------HHHHHHHHHHHCCEEE
T ss_pred HHHHHhccCCeeeHHHHHHHhhccC--------CCCCCchH----------------H------HHHHHHHHHhcccccc
Confidence 344466 789999999999986210 01111211 0 2577999999998887
Q ss_pred EecccceeecCCcceeeccc-----CCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcC
Q psy2640 194 IAKASVVCSLPARTSVIAAA-----NPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSG 268 (613)
Q Consensus 194 i~kagi~~~l~ar~svlAaa-----NP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~ 268 (613)
. +.+. ..+.- ..+++++ ||. ++-|+|++||+.+..+-+- ++++=.. |+...
T Consensus 293 ~-~~~~-~d~~~-ilfI~~gaf~~~~~~--------------dlipel~~R~~i~i~l~~l-t~~e~~~----Il~~~-- 348 (444)
T 1g41_A 293 T-KHGM-VKTDH-ILFIASGAFQVARPS--------------DLIPELQGRLPIRVELTAL-SAADFER----ILTEP-- 348 (444)
T ss_dssp E-TTEE-EECTT-CEEEEEECCSSCCGG--------------GSCHHHHTTCCEEEECCCC-CHHHHHH----HHHSS--
T ss_pred c-ccce-ecCCc-EEEEeccccccCChh--------------hcchHHhcccceeeeCCCC-CHHHHHH----HHHHH--
Confidence 6 5432 23322 3444443 442 2336799999987777433 3322222 22100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHh-hhcCCCcCChHHHHHHHHHHHHHH
Q psy2640 269 FQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYAR-KYVSKPELSTEAALLLQEFYLNLR 347 (613)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar-~~~~~P~Ls~eA~~~L~~~Yv~lR 347 (613)
...++++|..... ..+ .-.++++|...|.+.+.+..
T Consensus 349 ------------------------------------------~~~l~~q~~~~~~~~~~-~l~~~~~al~~i~~~a~~~~ 385 (444)
T 1g41_A 349 ------------------------------------------HASLTEQYKALMATEGV-NIAFTTDAVKKIAEAAFRVN 385 (444)
T ss_dssp ------------------------------------------TTCHHHHHHHHHHTTTC-EEEECHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------HHhHHHHHHHHhcccCc-eEEECHHHHHHHHHHHHHhc
Confidence 0134677765433 333 44799999999998876653
Q ss_pred hccCCCCCcccchHHHHHHHH
Q psy2640 348 KHHHSVDATPVTTRQLESLVR 368 (613)
Q Consensus 348 ~~~~~~~~~~iT~R~LEsliR 368 (613)
... -.+-.|.|++++.
T Consensus 386 ~~t-----~~~GaR~L~~~ie 401 (444)
T 1g41_A 386 EKT-----ENIGARRLHTVME 401 (444)
T ss_dssp HHS-----CCCGGGHHHHHHH
T ss_pred cCC-----ccCCchHHHHHHH
Confidence 211 1256788777764
No 26
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.18 E-value=0.0047 Score=68.22 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcccccccccChhHHHHHHHHhhhcc
Q psy2640 561 KQLYQLMSARAKCELREEASKQDAQDVIDIMKWSL 595 (613)
Q Consensus 561 esLiRLseArAkl~lre~vt~~Da~~vv~im~~s~ 595 (613)
++++|+++|+|.++.|+.||.+|+..+..++++.+
T Consensus 256 ~~llr~A~A~A~l~gr~~Vt~eDv~~a~~vL~hr~ 290 (500)
T 3nbx_X 256 KKAIRLLQASAFFSGRSAVAPVDLILLKDCLWYDA 290 (500)
T ss_dssp HHHHHHHHHHHHHTTCSBCCGGGGGGGGGTSCSSH
T ss_pred HHHHHHHHHHHhhcCCccccchHHHHHHhhhhcCc
Confidence 34999999999999999999999996666666654
No 27
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.98 E-value=0.2 Score=57.75 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=53.6
Q ss_pred cceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCCCCCC
Q psy2640 206 RTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQSFTEN 285 (613)
Q Consensus 206 r~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~~~~~ 285 (613)
.+.+++++||. .....+.+++++.+||.. +-++.|+.+.-..+-.++...+..
T Consensus 291 ~v~~I~at~~~--------~~~~~~~~d~al~rRf~~--i~v~~p~~~~~~~il~~~~~~~~~----------------- 343 (758)
T 3pxi_A 291 ELQCIGATTLD--------EYRKYIEKDAALERRFQP--IQVDQPSVDESIQILQGLRDRYEA----------------- 343 (758)
T ss_dssp SCEEEEECCTT--------TTHHHHTTCSHHHHSEEE--EECCCCCHHHHHHHHHHTTTTSGG-----------------
T ss_pred CEEEEeCCChH--------HHHHHhhccHHHHhhCcE--EEeCCCCHHHHHHHHHHHHHHHHH-----------------
Confidence 35688888874 233456689999999953 666777655444444433221100
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHH
Q psy2640 286 PNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYL 344 (613)
Q Consensus 286 ~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv 344 (613)
.....++.+.+..-+.++..+++...+++.+.+.+.....
T Consensus 344 -------------------~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~ 383 (758)
T 3pxi_A 344 -------------------HHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (758)
T ss_dssp -------------------GSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred -------------------hcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHH
Confidence 0111256666666666776666344566666666655443
No 28
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.80 E-value=0.065 Score=54.09 Aligned_cols=77 Identities=23% Similarity=0.221 Sum_probs=48.7
Q ss_pred eeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEe
Q psy2640 116 ALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIA 195 (613)
Q Consensus 116 alvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~ 195 (613)
.+-.+.+|+++|||++.+...... ..+. ......|+..|++.
T Consensus 125 ~~~~~~~~vl~iDEid~l~~~~~~--------------~~~~-------------------~~~~~~Ll~~l~~~----- 166 (309)
T 3syl_A 125 VLKRAMGGVLFIDEAYYLYRPDNE--------------RDYG-------------------QEAIEILLQVMENN----- 166 (309)
T ss_dssp HHHHHTTSEEEEETGGGSCCCC-----------------CCT-------------------HHHHHHHHHHHHHC-----
T ss_pred HHHhcCCCEEEEEChhhhccCCCc--------------cccc-------------------HHHHHHHHHHHhcC-----
Confidence 344567899999999988531000 0000 03567889999874
Q ss_pred cccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEe
Q psy2640 196 KASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFIL 246 (613)
Q Consensus 196 kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l 246 (613)
+.++.+++++|+. .......+.++|.+||+.++.+
T Consensus 167 --------~~~~~~i~~~~~~--------~~~~~~~~~~~l~~R~~~~i~~ 201 (309)
T 3syl_A 167 --------RDDLVVILAGYAD--------RMENFFQSNPGFRSRIAHHIEF 201 (309)
T ss_dssp --------TTTCEEEEEECHH--------HHHHHHHHSTTHHHHEEEEEEE
T ss_pred --------CCCEEEEEeCChH--------HHHHHHhhCHHHHHhCCeEEEc
Confidence 3567888888864 1112234568999999865554
No 29
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.23 E-value=0.27 Score=57.45 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=31.4
Q ss_pred ceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHHh
Q psy2640 207 TSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMAS 265 (613)
Q Consensus 207 ~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~~ 265 (613)
..+++++|+. .... +.++++|.+||+. +.++.|+.+.-..+-++++..
T Consensus 300 i~~I~at~~~--------~~~~-~~~d~aL~rRf~~--i~l~~p~~~e~~~iL~~~~~~ 347 (854)
T 1qvr_A 300 LRLIGATTLD--------EYRE-IEKDPALERRFQP--VYVDEPTVEETISILRGLKEK 347 (854)
T ss_dssp CCEEEEECHH--------HHHH-HTTCTTTCSCCCC--EEECCCCHHHHHHHHHHHHHH
T ss_pred eEEEEecCch--------HHhh-hccCHHHHhCCce--EEeCCCCHHHHHHHHHhhhhh
Confidence 4477777753 1222 6678999999996 456778766666666665543
No 30
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.86 E-value=0.29 Score=50.49 Aligned_cols=33 Identities=6% Similarity=-0.032 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHhhhhcchhhhhhccccCCccc
Q psy2640 359 TTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIF 392 (613)
Q Consensus 359 T~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~ 392 (613)
++|.+..+++-+-.. |..+..+.|+.+|+.+++
T Consensus 295 ~~r~~~~ll~~a~~~-A~~~~~~~It~~~v~~a~ 327 (368)
T 3uk6_A 295 SLRYAIQLITAASLV-CRKRKGTEVQVDDIKRVY 327 (368)
T ss_dssp CHHHHHHHHHHHHHH-HHHTTCSSBCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-HHHhCCCCCCHHHHHHHH
Confidence 466677776666555 655556666666654443
No 31
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.64 E-value=0.055 Score=48.86 Aligned_cols=61 Identities=10% Similarity=0.073 Sum_probs=37.8
Q ss_pred ccCCchhhhhHHHHhhhhh-cceEEEecccccccCceEEEEeeCCCCeeecCceeecccCceeccccccCCCc
Q psy2640 64 LSNEPQHTINCLGLAMHHY-IISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSA 135 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~-~r~~~~~g~~~s~~gLta~~~~~~~g~~~le~GalvLad~gv~ciDEfdkm~~ 135 (613)
+.|.|+.++..+.-++|.. ++. +..-. +.++.. ..+ .-..|.+..|++|+++|||++.++.
T Consensus 29 l~G~~GtGKt~lA~~i~~~~~~~------~~~~v-~~~~~~---~~~-~~~~~~~~~a~~g~l~ldei~~l~~ 90 (145)
T 3n70_A 29 LYGAPGTGRMTGARYLHQFGRNA------QGEFV-YRELTP---DNA-PQLNDFIALAQGGTLVLSHPEHLTR 90 (145)
T ss_dssp EESSTTSSHHHHHHHHHHSSTTT------TSCCE-EEECCT---TTS-SCHHHHHHHHTTSCEEEECGGGSCH
T ss_pred EECCCCCCHHHHHHHHHHhCCcc------CCCEE-EECCCC---Ccc-hhhhcHHHHcCCcEEEEcChHHCCH
Confidence 6788999999888888864 221 00000 111000 111 2234666778999999999999988
No 32
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=91.98 E-value=0.057 Score=57.31 Aligned_cols=65 Identities=23% Similarity=0.338 Sum_probs=53.9
Q ss_pred CCCeeecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhh
Q psy2640 107 GGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEA 186 (613)
Q Consensus 107 ~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ea 186 (613)
||...-.+|.+..|+||++++||++.|+. ..+..|+.+
T Consensus 217 tga~~~~~g~~~~a~~gtlfldei~~l~~------------------------------------------~~q~~Ll~~ 254 (387)
T 1ny5_A 217 TGAVSSKEGFFELADGGTLFLDEIGELSL------------------------------------------EAQAKLLRV 254 (387)
T ss_dssp TTCCSCBCCHHHHTTTSEEEEESGGGCCH------------------------------------------HHHHHHHHH
T ss_pred CCcccccCCceeeCCCcEEEEcChhhCCH------------------------------------------HHHHHHHHH
Confidence 44444578889999999999999999998 478899999
Q ss_pred hcCCeEEEecccceeecCCcceeecccCC
Q psy2640 187 MEQQSISIAKASVVCSLPARTSVIAAANP 215 (613)
Q Consensus 187 meqq~isi~kagi~~~l~ar~svlAaaNP 215 (613)
++++++. ..|.....+..+-++||+|.
T Consensus 255 l~~~~~~--~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 255 IESGKFY--RLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp HHHSEEC--CBTCCSBEECCCEEEEEESS
T ss_pred HhcCcEE--eCCCCceeeccEEEEEeCCC
Confidence 9999865 44666677788889999996
No 33
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.86 E-value=0.63 Score=47.45 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcccccccccChhHHHHHHHH-hhhcch
Q psy2640 561 KQLYQLMSARAKCELREEASKQDAQDVIDI-MKWSLI 596 (613)
Q Consensus 561 esLiRLseArAkl~lre~vt~~Da~~vv~i-m~~s~~ 596 (613)
..+++++.+.|.++-|+.||.+|+.+|+.. +.+.+.
T Consensus 292 ~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 292 LTLLRSARALAALEGATAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp HHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhccc
Confidence 558899999999999999999999999986 455554
No 34
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=91.79 E-value=0.066 Score=56.49 Aligned_cols=107 Identities=23% Similarity=0.304 Sum_probs=72.4
Q ss_pred ccCCchhhhhHHHHhhhhh-cce-EEEecccccc------cCceEEEEeeC-CCCeeecCceeecccCceeccccccCCC
Q psy2640 64 LSNEPQHTINCLGLAMHHY-IIS-VYVCGNTSTT------SGLTVTLSREG-GGDFALEAGALVLADQGVCCIDEFDKMS 134 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~-~r~-~~~~g~~~s~------~gLta~~~~~~-~g~~~le~GalvLad~gv~ciDEfdkm~ 134 (613)
+.|.++.++..+.-++|.. +|. .|+.-+.++- +-|.+. .+.. ||...-.+|.+..|+||++++||++.|+
T Consensus 157 i~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~-~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~ 235 (368)
T 3dzd_A 157 ITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGH-EKGAFTGALTRKKGKLELADQGTLFLDEVGELD 235 (368)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEE-CSCSSSSCCCCEECHHHHTTTSEEEEETGGGSC
T ss_pred EEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCc-cccccCCcccccCChHhhcCCCeEEecChhhCC
Confidence 4567777788887777753 332 1333333221 012211 1122 4544456788999999999999999999
Q ss_pred cccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccC
Q psy2640 135 AQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAAN 214 (613)
Q Consensus 135 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaN 214 (613)
. ..+..|+.+++++++. .-|-....+..+-+++|+|
T Consensus 236 ~------------------------------------------~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~rii~at~ 271 (368)
T 3dzd_A 236 Q------------------------------------------RVQAKLLRVLETGSFT--RLGGNQKIEVDIRVISATN 271 (368)
T ss_dssp H------------------------------------------HHHHHHHHHHHHSEEC--CBTCCCBEECCCEEEEEES
T ss_pred H------------------------------------------HHHHHHHHHHHhCCcc--cCCCCcceeeeeEEEEecC
Confidence 8 4788999999999865 4465667788888999998
Q ss_pred C
Q psy2640 215 P 215 (613)
Q Consensus 215 P 215 (613)
.
T Consensus 272 ~ 272 (368)
T 3dzd_A 272 K 272 (368)
T ss_dssp S
T ss_pred C
Confidence 4
No 35
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.04 E-value=0.032 Score=50.41 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=55.7
Q ss_pred ccCCchhhhhHHHHhhhhhcc-eEEEecccccccCceEEEEeeCCCCeeecCceeecccCceeccccccCCCcccccccc
Q psy2640 64 LSNEPQHTINCLGLAMHHYII-SVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGML 142 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~~r-~~~~~g~~~s~~gLta~~~~~~~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~ 142 (613)
+.|.|+.++..+.-++|.... -++++... +. -.+..|.+-.|++|+++|||++.++.
T Consensus 32 l~G~~GtGKt~lA~~i~~~~~~~~~~~~~~-----~~----------~~~~~~~~~~a~~~~l~lDei~~l~~------- 89 (143)
T 3co5_A 32 LTGEAGSPFETVARYFHKNGTPWVSPARVE-----YL----------IDMPMELLQKAEGGVLYVGDIAQYSR------- 89 (143)
T ss_dssp EEEETTCCHHHHHGGGCCTTSCEECCSSTT-----HH----------HHCHHHHHHHTTTSEEEEEECTTCCH-------
T ss_pred EECCCCccHHHHHHHHHHhCCCeEEechhh-----CC----------hHhhhhHHHhCCCCeEEEeChHHCCH-------
Confidence 567777778777777665321 11111110 00 01145667788999999999999987
Q ss_pred hhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCC
Q psy2640 143 YTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPV 216 (613)
Q Consensus 143 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~ 216 (613)
..+..+...|+++. +.++.+++++|+.
T Consensus 90 -----------------------------------~~q~~Ll~~l~~~~------------~~~~~iI~~tn~~ 116 (143)
T 3co5_A 90 -----------------------------------NIQTGITFIIGKAE------------RCRVRVIASCSYA 116 (143)
T ss_dssp -----------------------------------HHHHHHHHHHHHHT------------TTTCEEEEEEEEC
T ss_pred -----------------------------------HHHHHHHHHHHhCC------------CCCEEEEEecCCC
Confidence 36778888888763 5667799999864
No 36
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.07 E-value=0.33 Score=63.27 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=57.3
Q ss_pred HHHHHHhhhcCCeEEEecccceeecCCcceeecccCCC--CCCCCCCccchhhccccccccccccEEEEecCCCChhhhH
Q psy2640 179 QHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPV--GGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDT 256 (613)
Q Consensus 179 ~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~--~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~ 256 (613)
..+.|++.||++.+...+.+....+ .++.++||+||+ +|++ .+++++++||- ++.++.|+.+.-.
T Consensus 1358 ~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR~----------~l~~rllRrf~--vi~i~~P~~~~l~ 1424 (2695)
T 4akg_A 1358 VVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDPGRI----------PMSERFTRHAA--ILYLGYPSGKSLS 1424 (2695)
T ss_dssp HHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTSTTCC----------CCCHHHHTTEE--EEECCCCTTTHHH
T ss_pred HHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccCCCc----------cCChhhhheee--EEEeCCCCHHHHH
Confidence 6789999999998888777666666 789999999998 4554 38899999993 3556777776666
Q ss_pred HHHHHHHHhh
Q psy2640 257 LLSEHVMASL 266 (613)
Q Consensus 257 ~la~~Il~~~ 266 (613)
.|-..++..+
T Consensus 1425 ~I~~~il~~~ 1434 (2695)
T 4akg_A 1425 QIYEIYYKAI 1434 (2695)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 37
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.15 E-value=0.54 Score=50.89 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=64.8
Q ss_pred ccCCchhhhhHHHHhhhhhc-ce-EEEecccccccCceEEEEeeCCCCeeecCceeecccCceeccccccCCCccccccc
Q psy2640 64 LSNEPQHTINCLGLAMHHYI-IS-VYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGM 141 (613)
Q Consensus 64 l~~~p~~~~~~l~la~~~~~-r~-~~~~g~~~s~~gLta~~~~~~~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~ 141 (613)
+.|.|+.++..|..+++... +. +.++..+++.. -.++- +.--......+.+++++|||++.++.
T Consensus 55 L~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~-----~ir~~---~~~a~~~~~~~~~~iLfIDEI~~l~~------ 120 (447)
T 3pvs_A 55 LWGPPGTGKTTLAEVIARYANADVERISAVTSGVK-----EIREA---IERARQNRNAGRRTILFVDEVHRFNK------ 120 (447)
T ss_dssp EECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHH-----HHHHH---HHHHHHHHHTTCCEEEEEETTTCC--------
T ss_pred EECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHH-----HHHHH---HHHHHHhhhcCCCcEEEEeChhhhCH------
Confidence 67889999988877766543 22 22222111100 00000 00000001245789999999999987
Q ss_pred chhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeeccc--CCCCCC
Q psy2640 142 LYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAA--NPVGGH 219 (613)
Q Consensus 142 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaa--NP~~g~ 219 (613)
..+.+|+..||++++. +++++ ||.
T Consensus 121 ------------------------------------~~q~~LL~~le~~~v~---------------lI~att~n~~--- 146 (447)
T 3pvs_A 121 ------------------------------------SQQDAFLPHIEDGTIT---------------FIGATTENPS--- 146 (447)
T ss_dssp ----------------------------------------CCHHHHHTTSCE---------------EEEEESSCGG---
T ss_pred ------------------------------------HHHHHHHHHHhcCceE---------------EEecCCCCcc---
Confidence 3567889999986533 34443 331
Q ss_pred CCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHHH
Q psy2640 220 YNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMA 264 (613)
Q Consensus 220 ~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il~ 264 (613)
..+.++|+||+.. +. +..++.+.-..+..+.+.
T Consensus 147 ----------~~l~~aL~sR~~v-~~-l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 147 ----------FELNSALLSRARV-YL-LKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp ----------GSSCHHHHTTEEE-EE-CCCCCHHHHHHHHHHHHH
T ss_pred ----------cccCHHHhCceeE-Ee-eCCcCHHHHHHHHHHHHH
Confidence 3577899999973 33 566665555555555544
No 38
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=88.74 E-value=1.7 Score=47.11 Aligned_cols=124 Identities=18% Similarity=0.196 Sum_probs=74.0
Q ss_pred HHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHH
Q psy2640 180 HQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLS 259 (613)
Q Consensus 180 ~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la 259 (613)
...|..+|+.+ ...+++++|+. .....+.+++++.+||.. +.++.|+.+.-..+-
T Consensus 280 ~~~L~~~L~~g---------------~v~vI~at~~~--------e~~~~~~~~~al~~Rf~~--i~v~~p~~e~~~~iL 334 (468)
T 3pxg_A 280 SNILKPSLARG---------------ELQCIGATTLD--------EYRKYIEKDAALERRFQP--IQVDQPSVDESIQIL 334 (468)
T ss_dssp ----CCCTTSS---------------SCEEEEECCTT--------TTHHHHTTCSHHHHSEEE--EECCCCCHHHHHHHH
T ss_pred HHHHHHhhcCC---------------CEEEEecCCHH--------HHHHHhhcCHHHHHhCcc--ceeCCCCHHHHHHHH
Confidence 34567777644 45688888874 223456788999999973 677888765444444
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHH
Q psy2640 260 EHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLL 339 (613)
Q Consensus 260 ~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L 339 (613)
.++...+. +.....++.+.+..-+.++..++....+++.+.+.+
T Consensus 335 ~~~~~~~~------------------------------------~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll 378 (468)
T 3pxg_A 335 QGLRDRYE------------------------------------AHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (468)
T ss_dssp HHTTTTSG------------------------------------GGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred HHHHHHHH------------------------------------HhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHH
Confidence 43322110 001123677888888888888774456788888887
Q ss_pred HHHHHHHHhccCCCCCcccchHHHHHHH
Q psy2640 340 QEFYLNLRKHHHSVDATPVTTRQLESLV 367 (613)
Q Consensus 340 ~~~Yv~lR~~~~~~~~~~iT~R~LEsli 367 (613)
...-...|-.. ...|-..++++.-+
T Consensus 379 ~~a~~~~~~~~---~~~p~~i~~l~~~i 403 (468)
T 3pxg_A 379 DEAGSKVRLRS---FTTPPNLKELEQKL 403 (468)
T ss_dssp HHHHHHHHHHT---TSCCSSTHHHHHHH
T ss_pred HHHHHHHHhcc---CCCchHHHHHHHHH
Confidence 66554444322 23455667766554
No 39
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.30 E-value=10 Score=38.63 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=29.6
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHH-HHhhCCcEEecCCceEEEechhhH
Q psy2640 459 VFTVTELKQLATSANISVDNFFTFLT-SLNDQGFLLKKGKQLYQLMSAKKF 508 (613)
Q Consensus 459 ~~t~~el~~~a~~~gi~~~~~~~~i~-~L~~~G~i~~~g~~~~~l~~~~~~ 508 (613)
.+.+.. ++...|.....+++..+ .|.+.|++.....|..-...+++.
T Consensus 276 ~~~~~~---l~~~~~~~~~t~~~~~~~~l~~~g~i~~~~~gr~~~~~~~~~ 323 (334)
T 1in4_A 276 PVGLNA---LAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTEKAYKH 323 (334)
T ss_dssp CBCHHH---HHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHH
T ss_pred cchHHH---HHHHhCCCcchHHHHHHHHHHHcCCeecccccHHhhHHHHHH
Confidence 345554 45555666666666666 788899988777766544444433
No 40
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.30 E-value=5 Score=53.24 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=56.5
Q ss_pred HHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCC--CCCCCCccchhhccccccccccccEEEEecCCCChhhhH
Q psy2640 179 QHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVG--GHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDT 256 (613)
Q Consensus 179 ~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~--g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~ 256 (613)
..+.|++.|+++..-..+.+-...+ ..+.++||+||.+ |+. .+++++++||-. +-++.|+.+.-.
T Consensus 1396 ~ielLrqlld~~g~yd~~~~~~~~i-~d~~~vaamnPp~~gGr~----------~l~~Rf~r~F~v--i~i~~ps~esL~ 1462 (3245)
T 3vkg_A 1396 VITFIRQMVEKGGFWRTSDHTWIKL-DKIQFVGACNPPTDAGRV----------QLTHRFLRHAPI--LLVDFPSTSSLT 1462 (3245)
T ss_dssp HHHHHHHHHHHSEEEETTTTEEEEE-SSEEEEEEECCTTSTTCC----------CCCHHHHTTCCE--EECCCCCHHHHH
T ss_pred HHHHHHHHHHcCCeEECCCCeEEEe-cCeEEEEEcCCCCCCCCc----------cCCHHHHhhceE--EEeCCCCHHHHH
Confidence 5788999999998887766655556 7889999999984 443 489999999966 455788776666
Q ss_pred HHHHHHHHhh
Q psy2640 257 LLSEHVMASL 266 (613)
Q Consensus 257 ~la~~Il~~~ 266 (613)
.|-..++..+
T Consensus 1463 ~If~til~~~ 1472 (3245)
T 3vkg_A 1463 QIYGTFNRAL 1472 (3245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555544
No 41
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=87.22 E-value=0.068 Score=54.36 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHhhCccccchH--Hhh----hccchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhhhhhcce
Q psy2640 12 DTKIKSCLDFIERHNHLYNVA--EIE----ERRCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHYIIS 85 (613)
Q Consensus 12 ~~~i~~~e~~~~~~~~lYd~~--~I~----~~~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~~~~~r~ 85 (613)
.+..++|.+||.++ .|.-. ++. .+.++.+|+..+... ++.+.+.|..+|...+.++..|++.+..
T Consensus 12 ~~~~~~f~~Fl~~~--~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~------~~~La~~l~~~P~~~l~~~~~a~~~~~~- 82 (279)
T 1ltl_A 12 SKTLTKFEEFFSLQ--DYKDRVFEAIEKYPNVRSIEVDYLDLEMF------DPDLADLLIEKPDDVIRAAQQAIRNIDR- 82 (279)
T ss_dssp HHHHHHHHHHTTSH--HHHHHHHHHHHHTTSCCEEEEEHHHHHHH------CTTHHHHHHHSHHHHHHHHHHHHTTTCT-
T ss_pred HHHHHHHHHHhccc--hHHHHHHHHHhhCCCCeEEEEEhHHHhhh------CHHHHHHHHHCHHHHHHHHHHHHHHhcc-
Confidence 45567788888764 34311 222 244555666655543 5688999999999999999998876521
Q ss_pred EEEecccccccCceEEEEeeCCCCeeecCceeecccCceeccccccCCCcccccccchhccccccccccccccccccccc
Q psy2640 86 VYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSI 165 (613)
Q Consensus 86 ~~~~g~~~s~~gLta~~~~~~~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 165 (613)
|- . ..-..+.+.--+ -...+-.++. ..+..+-+++|||+| ++.+
T Consensus 83 -~~--~---~~~~~vr~~~~~-------------------~~~~iR~L~~----~~igkLV~v~GiV~r-------~S~V 126 (279)
T 1ltl_A 83 -LR--K---NVDLNIRFSGIS-------------------NVIPLRELRS----KFIGKFVAVDGIVRK-------TDEI 126 (279)
T ss_dssp -TC--C---CCCCEEEEECCS-------------------CBCCGGGCCG----GGTTSEEEEEEEEEE-------ECCC
T ss_pred -cc--C---CeeEEEEEECCC-------------------CCCCcccCCh----hhCCCEEEEEEEEEE-------ecce
Confidence 10 0 000111000000 0011122222 345567799999999 8999
Q ss_pred ccccccccccchHHH
Q psy2640 166 HPVMGEKRHTMSAQH 180 (613)
Q Consensus 166 ~~~~~~~~~~~~~~~ 180 (613)
+|.+.+..|.|..|.
T Consensus 127 ~p~~~~~~f~C~~C~ 141 (279)
T 1ltl_A 127 RPRIVKAVFECRGCM 141 (279)
T ss_dssp EEEEEEEEEEETTTC
T ss_pred EEEEEEEEEEcCCCC
Confidence 999999999998776
No 42
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=83.34 E-value=0.96 Score=47.51 Aligned_cols=60 Identities=23% Similarity=0.307 Sum_probs=34.5
Q ss_pred HHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHH
Q psy2640 180 HQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLS 259 (613)
Q Consensus 180 ~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la 259 (613)
...+...|+ |.....+.++.|++++|+.. .+++++++||+.++. +..|+.+.-..+.
T Consensus 235 ~~~ll~~l~---------~~~~~~~~~v~vI~atn~~~-------------~l~~~l~~R~~~~i~-i~~p~~~~r~~il 291 (389)
T 3vfd_A 235 KTEFLIEFD---------GVQSAGDDRVLVMGATNRPQ-------------ELDEAVLRRFIKRVY-VSLPNEETRLLLL 291 (389)
T ss_dssp HHHHHHHHH---------HHC-----CEEEEEEESCGG-------------GCCHHHHTTCCEEEE-CCCCCHHHHHHHH
T ss_pred HHHHHHHhh---------cccccCCCCEEEEEecCCch-------------hcCHHHHcCcceEEE-cCCcCHHHHHHHH
Confidence 445666665 33334467889999999741 467899999986533 4556654444444
Q ss_pred HHH
Q psy2640 260 EHV 262 (613)
Q Consensus 260 ~~I 262 (613)
.++
T Consensus 292 ~~~ 294 (389)
T 3vfd_A 292 KNL 294 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 43
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=82.69 E-value=0.36 Score=48.63 Aligned_cols=134 Identities=9% Similarity=0.091 Sum_probs=78.7
Q ss_pred chHHHHHHHHHHhhCcc----ccchHHhh-----hccchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhhhh
Q psy2640 11 TDTKIKSCLDFIERHNH----LYNVAEIE-----ERRCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHH 81 (613)
Q Consensus 11 ~~~~i~~~e~~~~~~~~----lYd~~~I~-----~~~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~~~ 81 (613)
.++..++|++||.++.+ .|-.+.|. .+.+..+|+..+... ++.+.+.|..+|...+.++..|++.
T Consensus 7 ~~~~~~~f~~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~~------~~~La~~l~~~P~~~l~~~~~a~~~ 80 (268)
T 2vl6_A 7 QIDYRDVFIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSF------NENLAYEIINNTKIILPILEGALYD 80 (268)
T ss_dssp CCCHHHHHHHHHHHCCCSSSSCTTHHHHHHHHHTTCCCEEEEHHHHHHH------CHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHcCCcEEEEEHHHHHhh------hHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 34677899999988632 11122332 344556666655443 5788999999999999999988776
Q ss_pred hcceEEEecccccccCceEEEEeeCCCCeeecCceeecccCceeccccccCCCcccccccchhccccccccccccccccc
Q psy2640 82 YIISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFI 161 (613)
Q Consensus 82 ~~r~~~~~g~~~s~~gLta~~~~~~~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 161 (613)
+....+-. +. +....+.+..-- +. .. ..+-.++. ..+..+-+++|||+|
T Consensus 81 ~~~~~~~~--------~~-----~~~~~~~vr~~~--~~--~~---~~iR~l~~----~~igkLV~v~GiV~r------- 129 (268)
T 2vl6_A 81 HILQLDPT--------YQ-----RDIEKVHVRIVG--IP--RV---IELRKIRS----TDIGKLITIDGILVK------- 129 (268)
T ss_dssp HHHTTCGG--------GT-----TTCSCCCEEEEC--CS--CE---ECGGGCCG----GGTTSEEEEEEEEEE-------
T ss_pred HHHHhCch--------hh-----ccCccEEEEEEC--CC--CC---CccccCCh----hHCCCeEEEEEEEEE-------
Confidence 54321100 00 000011110000 00 00 11122222 335567799999999
Q ss_pred ccccccccccccccc--hHHHH
Q psy2640 162 TMSIHPVMGEKRHTM--SAQHQ 181 (613)
Q Consensus 162 ~~~~~~~~~~~~~~~--~~~~~ 181 (613)
++.++|.+.+..|.| ..|..
T Consensus 130 ~S~V~p~~~~~~f~C~~~~C~~ 151 (268)
T 2vl6_A 130 VTPVKERIYKATYKHIHPDCMQ 151 (268)
T ss_dssp ECCCEEEEEECEEEEECTTCCC
T ss_pred cCCcceEeEEEEEECCCCCCCC
Confidence 899999999999999 77764
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=81.37 E-value=2.6 Score=45.25 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=26.0
Q ss_pred CCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChh
Q psy2640 204 PARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEH 253 (613)
Q Consensus 204 ~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~ 253 (613)
+.++.|++++|+. -.+++++++|||.++.+ ..|+.+
T Consensus 269 ~~~v~vI~atn~~-------------~~ld~al~rRf~~~i~i-~~P~~~ 304 (444)
T 2zan_A 269 NDGILVLGATNIP-------------WVLDSAIRRRFEKRIYI-PLPEAH 304 (444)
T ss_dssp CSSCEEEEEESCG-------------GGSCHHHHTTCCEEEEC-CCCCHH
T ss_pred CCCEEEEecCCCc-------------cccCHHHHhhcceEEEe-CCcCHH
Confidence 5678899999975 13678999999975544 556554
No 45
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.91 E-value=7.2 Score=37.57 Aligned_cols=34 Identities=3% Similarity=-0.132 Sum_probs=17.7
Q ss_pred cchHHHHHHHHHHHhhhhcchhhhhhccccCCccc
Q psy2640 358 VTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIF 392 (613)
Q Consensus 358 iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~ 392 (613)
++.|++..+++-+... |..+....|+.+|+..++
T Consensus 213 ~~~~~l~~l~~~a~~~-a~~~~~~~i~~~d~~~a~ 246 (262)
T 2qz4_A 213 FSGADIANICNEAALH-AAREGHTSVHTLNFEYAV 246 (262)
T ss_dssp CCHHHHHHHHHHHHTC---------CCBCCHHHHH
T ss_pred CCHHHHHHHHHHHHHH-HHHcCCCCCCHHHHHHHH
Confidence 5778888888777555 655556667776664443
No 46
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.49 E-value=2.8 Score=41.38 Aligned_cols=36 Identities=8% Similarity=-0.048 Sum_probs=26.5
Q ss_pred cchHHHHHHHHHHHhhhhcchhhhhhccccCCccchh
Q psy2640 358 VTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGH 394 (613)
Q Consensus 358 iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~ 394 (613)
.++|+++.+++.|... |-.+..+.|+.+|+..++..
T Consensus 222 ~~~~~i~~l~~~a~~~-a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 222 CVGAELKAICTEAGMN-AIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp CCHHHHHHHHHHHHHH-HHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-HHHhccCcCCHHHHHHHHHH
Confidence 5788888888888777 77777777777777555543
No 47
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=79.40 E-value=3.4 Score=33.72 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCceEEEe
Q psy2640 442 KKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLM 503 (613)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l~ 503 (613)
.++++++++. +..+...+ +++..|+...+++.++..|+.+|.|..++.-.|++.
T Consensus 22 ekVLe~Lkea-----G~Plkage---Iae~~GvdKKeVdKaik~LKkEgkI~SPkRCyw~~~ 75 (80)
T 2lnb_A 22 QRILQVLTEA-----GSPVKLAQ---LVKECQAPKRELNQVLYRMKKELKVSLTSPATWCLG 75 (80)
T ss_dssp HHHHHHHHHH-----TSCEEHHH---HHHHHTSCHHHHHHHHHHHHHTTSEEEEETTEEEES
T ss_pred HHHHHHHHHc-----CCCCCHHH---HHHHHCCCHHHHHHHHHHHHHcCCccCCCCceeeCC
Confidence 4566777663 33566776 577789999999999999999999999999999874
No 48
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=79.17 E-value=6 Score=30.89 Aligned_cols=41 Identities=7% Similarity=0.182 Sum_probs=35.4
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCceEEE
Q psy2640 459 VFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQL 502 (613)
Q Consensus 459 ~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l 502 (613)
.++..+ +|...|++...+...|..|.++|++.....+.|.+
T Consensus 25 ~~s~~e---LA~~lglsr~tv~~~l~~L~~~G~I~~~~~G~y~l 65 (67)
T 2heo_A 25 PVAIFQ---LVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYWSI 65 (67)
T ss_dssp CEEHHH---HHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred CcCHHH---HHHHHCcCHHHHHHHHHHHHHCCcEecCCCceEee
Confidence 467776 68889999999999999999999988777788876
No 49
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.68 E-value=2.6 Score=42.54 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=34.5
Q ss_pred HHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhcccccccc--ccccEEEEecCCCChhhhH
Q psy2640 179 QHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALL--SRFDLVFILLDNPDEHLDT 256 (613)
Q Consensus 179 ~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~ll--sRFDLi~~l~d~~~~~~d~ 256 (613)
....|.+.|+..+..--.......-..+..|++++|... .++++++ +|||.++.+ |+.+.=.
T Consensus 128 v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-------------~ld~al~R~~R~d~~i~~---P~~~~r~ 191 (293)
T 3t15_A 128 VNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-------------TLYAPLIRDGRMEKFYWA---PTREDRI 191 (293)
T ss_dssp HHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-------------C--CHHHHHHHEEEEEEC---CCHHHHH
T ss_pred HHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-------------cCCHHHhCCCCCceeEeC---cCHHHHH
Confidence 347788888755432211111122356788999999641 3778888 699976653 5444333
Q ss_pred HHHH
Q psy2640 257 LLSE 260 (613)
Q Consensus 257 ~la~ 260 (613)
.|.+
T Consensus 192 ~Il~ 195 (293)
T 3t15_A 192 GVCT 195 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 50
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=76.07 E-value=1.8 Score=43.79 Aligned_cols=68 Identities=29% Similarity=0.390 Sum_probs=48.7
Q ss_pred cCceeccccccCCC-cccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccc
Q psy2640 121 DQGVCCIDEFDKMS-AQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASV 199 (613)
Q Consensus 121 d~gv~ciDEfdkm~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi 199 (613)
+.++++|||++.++ . ..+.+|+..||..
T Consensus 105 ~~~vliiDEi~~l~~~------------------------------------------~~~~~L~~~le~~--------- 133 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLA------------------------------------------ESQRHLRSFMEAY--------- 133 (324)
T ss_dssp CEEEEEEESCCCGGGH------------------------------------------HHHHHHHHHHHHH---------
T ss_pred CCeEEEEECCcccCcH------------------------------------------HHHHHHHHHHHhC---------
Confidence 67899999999998 5 3677888888853
Q ss_pred eeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHH
Q psy2640 200 VCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLL 258 (613)
Q Consensus 200 ~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~l 258 (613)
+..+.+++++|+.. .+++++.|||.. +-...|+++.-..+
T Consensus 134 ----~~~~~iI~~~n~~~-------------~l~~~l~sR~~~--i~~~~~~~~e~~~i 173 (324)
T 3u61_B 134 ----SSNCSIIITANNID-------------GIIKPLQSRCRV--ITFGQPTDEDKIEM 173 (324)
T ss_dssp ----GGGCEEEEEESSGG-------------GSCTTHHHHSEE--EECCCCCHHHHHHH
T ss_pred ----CCCcEEEEEeCCcc-------------ccCHHHHhhCcE--EEeCCCCHHHHHHH
Confidence 35677888888742 478899999952 44566665443333
No 51
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=72.96 E-value=1.8 Score=42.84 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhcccccccccChhHHHHHHHHhhhc
Q psy2640 560 GKQLYQLMSARAKCELREEASKQDAQDVIDIMKWS 594 (613)
Q Consensus 560 ~esLiRLseArAkl~lre~vt~~Da~~vv~im~~s 594 (613)
.+.|++-+.+.|-.+.++.+|.+|+..|+.-+...
T Consensus 227 i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 227 LKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhc
Confidence 35689999899989999999999999999877654
No 52
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=71.90 E-value=3 Score=43.30 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=31.9
Q ss_pred HHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhh
Q psy2640 180 HQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHL 254 (613)
Q Consensus 180 ~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~ 254 (613)
...+...|+... ...+.++.|++++|+.. .+++++++||+..+. +..|+.+.
T Consensus 204 ~~~lL~~l~~~~---------~~~~~~v~vI~atn~~~-------------~l~~~l~~Rf~~~i~-i~~p~~~~ 255 (357)
T 3d8b_A 204 KTEFLVQLDGAT---------TSSEDRILVVGATNRPQ-------------EIDEAARRRLVKRLY-IPLPEASA 255 (357)
T ss_dssp HHHHHHHHHC-------------CCCCEEEEEEESCGG-------------GBCHHHHTTCCEEEE-CCCCCHHH
T ss_pred HHHHHHHHhccc---------ccCCCCEEEEEecCChh-------------hCCHHHHhhCceEEE-eCCcCHHH
Confidence 445666665322 23456788999999741 367889999995544 45555443
No 53
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=71.57 E-value=5.6 Score=36.61 Aligned_cols=65 Identities=23% Similarity=0.236 Sum_probs=43.5
Q ss_pred ccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccc
Q psy2640 120 ADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASV 199 (613)
Q Consensus 120 ad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi 199 (613)
+..++++|||++.+.. .....|+..+++.
T Consensus 101 ~~~~vliiDe~~~l~~------------------------------------------~~~~~l~~~l~~~--------- 129 (226)
T 2chg_A 101 APFKIIFLDEADALTA------------------------------------------DAQAALRRTMEMY--------- 129 (226)
T ss_dssp CSCEEEEEETGGGSCH------------------------------------------HHHHHHHHHHHHT---------
T ss_pred cCceEEEEeChhhcCH------------------------------------------HHHHHHHHHHHhc---------
Confidence 4678999999999987 3566788777753
Q ss_pred eeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhh
Q psy2640 200 VCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHL 254 (613)
Q Consensus 200 ~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~ 254 (613)
+..+.+++++|.. -.+.+++.+||. .+-+..++.+.
T Consensus 130 ----~~~~~~i~~~~~~-------------~~~~~~l~~r~~--~i~~~~~~~~~ 165 (226)
T 2chg_A 130 ----SKSCRFILSCNYV-------------SRIIEPIQSRCA--VFRFKPVPKEA 165 (226)
T ss_dssp ----TTTEEEEEEESCG-------------GGSCHHHHTTSE--EEECCCCCHHH
T ss_pred ----CCCCeEEEEeCCh-------------hhcCHHHHHhCc--eeecCCCCHHH
Confidence 3455667777653 135678999997 33344555433
No 54
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=70.44 E-value=74 Score=36.71 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=15.6
Q ss_pred cceeecCCCCCCcchhhhH
Q psy2640 419 AHVLIVGDPGLGKSQMLHA 437 (613)
Q Consensus 419 idil~vgdpGtgKSq~l~~ 437 (613)
-++|+.|.||+|||.+.++
T Consensus 512 ~~vLL~GppGtGKT~Laka 530 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKA 530 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHH
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 3578999999999998544
No 55
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=69.87 E-value=4.4 Score=42.01 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=27.3
Q ss_pred CCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHH
Q psy2640 204 PARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLL 258 (613)
Q Consensus 204 ~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~l 258 (613)
+.++.|++++|+.. .+++++++|||..+. +..|+.+.-..+
T Consensus 185 ~~~v~vI~atn~~~-------------~ld~al~rRf~~~i~-i~~P~~~~r~~i 225 (355)
T 2qp9_X 185 SQGVLVLGATNIPW-------------QLDSAIRRRFERRIY-IPLPDLAARTTM 225 (355)
T ss_dssp -CCEEEEEEESCGG-------------GSCHHHHHTCCEEEE-CCCCCHHHHHHH
T ss_pred CCCeEEEeecCCcc-------------cCCHHHHcccCEEEE-eCCcCHHHHHHH
Confidence 45678999999741 467899999997664 455665433333
No 56
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=69.69 E-value=11 Score=38.39 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=25.6
Q ss_pred CCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChh
Q psy2640 204 PARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEH 253 (613)
Q Consensus 204 ~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~ 253 (613)
+.+..|++++|+.. .+++++++|||..+. +..|+.+
T Consensus 147 ~~~v~vI~atn~~~-------------~ld~al~rRf~~~i~-i~~P~~~ 182 (322)
T 1xwi_A 147 NDGILVLGATNIPW-------------VLDSAIRRRFEKRIY-IPLPEPH 182 (322)
T ss_dssp CTTEEEEEEESCTT-------------TSCHHHHHTCCEEEE-CCCCCHH
T ss_pred CCCEEEEEecCCcc-------------cCCHHHHhhcCeEEE-eCCcCHH
Confidence 46788999999751 367899999996544 4556654
No 57
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.16 E-value=4.6 Score=40.86 Aligned_cols=41 Identities=7% Similarity=-0.004 Sum_probs=25.4
Q ss_pred cchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhhh
Q psy2640 38 RCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMH 80 (613)
Q Consensus 38 ~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~~ 80 (613)
..+..++++.+...+-.|..+.+ -+.|.|+.++..+..+++
T Consensus 39 i~g~~~~~~~l~~~l~~~~~~~~--ll~G~~G~GKT~la~~la 79 (353)
T 1sxj_D 39 VTAQDHAVTVLKKTLKSANLPHM--LFYGPPGTGKTSTILALT 79 (353)
T ss_dssp CCSCCTTHHHHHHHTTCTTCCCE--EEECSTTSSHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHhcCCCCEE--EEECCCCCCHHHHHHHHH
Confidence 34566666666666655543332 367888888877765544
No 58
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=68.34 E-value=4.7 Score=39.98 Aligned_cols=138 Identities=17% Similarity=0.168 Sum_probs=73.6
Q ss_pred cchhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhhhhhc-------ceEEEecccccccCceEEEEeeCCCCe
Q psy2640 38 RCYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAMHHYI-------ISVYVCGNTSTTSGLTVTLSREGGGDF 110 (613)
Q Consensus 38 ~~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~~~~~-------r~~~~~g~~~s~~gLta~~~~~~~g~~ 110 (613)
..+..++++.+...+-.+..+.+ -+.|.|+.++..+..+++... .-+++++ +...|.. ..++.-.++
T Consensus 19 ~~g~~~~~~~l~~~l~~~~~~~~--ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~ 92 (319)
T 2chq_A 19 VVGQDEVIQRLKGYVERKNIPHL--LFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA--SDERGID--VVRHKIKEF 92 (319)
T ss_dssp SCSCHHHHHHHHTTTTTTCCCCE--EEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET--TSTTCTT--TSSHHHHHH
T ss_pred HhCCHHHHHHHHHHHhCCCCCeE--EEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC--ccccChH--HHHHHHHHH
Confidence 34566666666655544443332 367888888877665544321 1122222 2111100 000000001
Q ss_pred eecCceeecccCceeccccccCCCcccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCC
Q psy2640 111 ALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQ 190 (613)
Q Consensus 111 ~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq 190 (613)
. +..++--++.++++|||++.++. ....+|+..||.
T Consensus 93 ~-~~~~~~~~~~~vliiDe~~~l~~------------------------------------------~~~~~L~~~le~- 128 (319)
T 2chq_A 93 A-RTAPIGGAPFKIIFLDEADALTA------------------------------------------DAQAALRRTMEM- 128 (319)
T ss_dssp H-HSCCSSSCCCEEEEEETGGGSCH------------------------------------------HHHHTTGGGTSS-
T ss_pred H-hcCCCCCCCceEEEEeCCCcCCH------------------------------------------HHHHHHHHHHHh-
Confidence 0 01111124578999999999987 356778888876
Q ss_pred eEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCCh
Q psy2640 191 SISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDE 252 (613)
Q Consensus 191 ~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~ 252 (613)
.+..+.++.++|+.. .+.+++.+|+. .+-+..++.
T Consensus 129 ------------~~~~~~~i~~~~~~~-------------~l~~~l~sr~~--~i~~~~~~~ 163 (319)
T 2chq_A 129 ------------YSKSCRFILSCNYVS-------------RIIEPIQSRCA--VFRFKPVPK 163 (319)
T ss_dssp ------------SSSSEEEEEEESCGG-------------GSCHHHHTTCE--EEECCCCCH
T ss_pred ------------cCCCCeEEEEeCChh-------------hcchHHHhhCe--EEEecCCCH
Confidence 245666777777531 46788999996 233444443
No 59
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=65.98 E-value=5.2 Score=40.65 Aligned_cols=44 Identities=23% Similarity=0.227 Sum_probs=29.4
Q ss_pred CCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHH
Q psy2640 204 PARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEH 261 (613)
Q Consensus 204 ~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~ 261 (613)
+.++.|++++|+.. .+++++++|||..+ ....|+.+.-..+-++
T Consensus 152 ~~~v~vi~atn~~~-------------~ld~al~~Rf~~~i-~~~~p~~~~r~~il~~ 195 (322)
T 3eie_A 152 SQGVLVLGATNIPW-------------QLDSAIRRRFERRI-YIPLPDLAARTTMFEI 195 (322)
T ss_dssp CCCEEEEEEESCGG-------------GSCHHHHHHCCEEE-ECCCCCHHHHHHHHHH
T ss_pred CCceEEEEecCChh-------------hCCHHHHcccCeEE-EeCCCCHHHHHHHHHH
Confidence 45678999999741 37789999999765 4455665544444444
No 60
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=65.72 E-value=20 Score=29.24 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecC--CceEEEechhh
Q psy2640 443 KFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKG--KQLYQLMSAKK 507 (613)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g--~~~~~l~~~~~ 507 (613)
++++.|... .++..++..+ +|...|++...+...|..|.++|.+...| ++.|.+....+
T Consensus 14 ~IL~~L~~~---~pg~~~t~~e---LA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~~ 74 (81)
T 1qbj_A 14 RILKFLEEL---GEGKATTAHD---LSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHH---CTTCCBCHHH---HHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC----
T ss_pred HHHHHHHHc---CCCCCcCHHH---HHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcHH
Confidence 345555532 2234577777 68889999999999999999999998644 47899876654
No 61
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=64.87 E-value=8.9 Score=37.94 Aligned_cols=35 Identities=34% Similarity=0.457 Sum_probs=23.4
Q ss_pred CcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChh
Q psy2640 205 ARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEH 253 (613)
Q Consensus 205 ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~ 253 (613)
.++.|++++|... .+++++++||+..+. ...|+.+
T Consensus 158 ~~v~vi~~tn~~~-------------~l~~~l~~R~~~~i~-~~~p~~~ 192 (297)
T 3b9p_A 158 DRIVVLAATNRPQ-------------ELDEAALRRFTKRVY-VSLPDEQ 192 (297)
T ss_dssp -CEEEEEEESCGG-------------GBCHHHHHHCCEEEE-CCCCCHH
T ss_pred CcEEEEeecCChh-------------hCCHHHHhhCCeEEE-eCCcCHH
Confidence 4578889988641 467889999996544 3455543
No 62
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=62.93 E-value=7.6 Score=38.57 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.3
Q ss_pred ccCceeccccccCCCc
Q psy2640 120 ADQGVCCIDEFDKMSA 135 (613)
Q Consensus 120 ad~gv~ciDEfdkm~~ 135 (613)
+..++++|||++.++.
T Consensus 109 ~~~~vliiDe~~~l~~ 124 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ 124 (327)
T ss_dssp CSCEEEEEETGGGSCH
T ss_pred CCCeEEEEeCCCcCCH
Confidence 5678999999999987
No 63
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=57.24 E-value=2.3 Score=38.29 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=20.2
Q ss_pred cceeecccCCCCCCCCCCccchhhccccccccccccEE
Q psy2640 206 RTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLV 243 (613)
Q Consensus 206 r~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi 243 (613)
++.+++++|+. ...+...+++++++||+.+
T Consensus 152 ~~~ii~~~~~~--------~~~~~~~~~~~l~~R~~~i 181 (187)
T 2p65_A 152 ELRCIGATTVS--------EYRQFIEKDKALERRFQQI 181 (187)
T ss_dssp CSCEEEEECHH--------HHHHHTTTCHHHHHHEEEE
T ss_pred CeeEEEecCHH--------HHHHHHhccHHHHHhcCcc
Confidence 45678888863 1223356789999999853
No 64
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=53.66 E-value=5.8 Score=35.49 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=23.6
Q ss_pred cceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCCh
Q psy2640 206 RTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDE 252 (613)
Q Consensus 206 r~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~ 252 (613)
++.+++++|+. ...+...+++++++||+. +-+..++.
T Consensus 151 ~~~~i~~~~~~--------~~~~~~~~~~~l~~r~~~--i~~~~p~~ 187 (195)
T 1jbk_A 151 ELHCVGATTLD--------EYRQYIEKDAALERRFQK--VFVAEPSV 187 (195)
T ss_dssp SCCEEEEECHH--------HHHHHTTTCHHHHTTEEE--EECCCCCH
T ss_pred CeEEEEeCCHH--------HHHHHHhcCHHHHHHhce--eecCCCCH
Confidence 45567777753 233445678999999983 34555553
No 65
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=53.19 E-value=44 Score=26.88 Aligned_cols=51 Identities=25% Similarity=0.422 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEec
Q psy2640 442 KKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKK 495 (613)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~ 495 (613)
..+++.|+.......+...++.| +|...|++...+..-|..|+++|.+...
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~E---Ia~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRD---IADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHH---HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhhccCCCcCHHH---HHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 34555555543333234577877 6888899999999999999999999765
No 66
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=51.62 E-value=1e+02 Score=30.89 Aligned_cols=38 Identities=11% Similarity=0.320 Sum_probs=26.6
Q ss_pred cccHHHHHH----HHHhCC---CCHHHHHHHHHHHhhCCcEEecC
Q psy2640 459 VFTVTELKQ----LATSAN---ISVDNFFTFLTSLNDQGFLLKKG 496 (613)
Q Consensus 459 ~~t~~el~~----~a~~~g---i~~~~~~~~i~~L~~~G~i~~~g 496 (613)
.++.+++.+ ++...| ++...+...++.|...|++....
T Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 308 YITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp CEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred CccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEee
Confidence 455555533 344433 46788999999999999988754
No 67
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=49.43 E-value=20 Score=36.19 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=15.8
Q ss_pred ccChhHHHHHHHHhhhcc
Q psy2640 578 EASKQDAQDVIDIMKWSL 595 (613)
Q Consensus 578 ~vt~~Da~~vv~im~~s~ 595 (613)
.||.+|..+|+.-++.|.
T Consensus 285 ~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 285 DLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp CCCHHHHHHHHHHSCCSS
T ss_pred CCCHHHHHHHHHhcCCCC
Confidence 499999999999888775
No 68
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=48.95 E-value=45 Score=26.58 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecC--CceEEEe
Q psy2640 443 KFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKG--KQLYQLM 503 (613)
Q Consensus 443 ~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g--~~~~~l~ 503 (613)
+++..|.... .+..++..+ +|...|++...+...|..|++.|++...| ++.|.+.
T Consensus 18 ~IL~~L~~~~---~~~~~t~~e---LA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~ 74 (77)
T 1qgp_A 18 RILKFLEELG---EGKATTAHD---LSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIA 74 (77)
T ss_dssp HHHHHHHHHC---SSSCEEHHH---HHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEEEC
T ss_pred HHHHHHHHcC---CCCCcCHHH---HHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceEec
Confidence 3445554432 234577777 68889999999999999999999997754 3677764
No 69
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=47.59 E-value=13 Score=37.50 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhcccccccccChhHHHHHHH-Hhhhcch
Q psy2640 560 GKQLYQLMSARAKCELREEASKQDAQDVID-IMKWSLI 596 (613)
Q Consensus 560 ~esLiRLseArAkl~lre~vt~~Da~~vv~-im~~s~~ 596 (613)
...|+|+++|+|.++-|+.||.+|+.+|+. ++.+.+.
T Consensus 266 ~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~~ 303 (331)
T 2r44_A 266 AINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRII 303 (331)
T ss_dssp HHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhcc
Confidence 356999999999999999999999999997 4566554
No 70
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=45.66 E-value=57 Score=28.07 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=36.5
Q ss_pred CccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEec-C-CceEEEechh
Q psy2640 457 RSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKK-G-KQLYQLMSAK 506 (613)
Q Consensus 457 ~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~-g-~~~~~l~~~~ 506 (613)
+..++..+ +|.+.|++...+..++..|.+.|++... | +|-|.+...-
T Consensus 24 ~~~~s~~e---la~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~ 72 (129)
T 2y75_A 24 EGPTSLKS---IAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEP 72 (129)
T ss_dssp SCCBCHHH---HHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCG
T ss_pred CCcCCHHH---HHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCH
Confidence 44567766 6888999999999999999999998765 4 3668886443
No 71
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=45.35 E-value=37 Score=31.16 Aligned_cols=15 Identities=33% Similarity=0.295 Sum_probs=12.7
Q ss_pred cCceeccccccCCCc
Q psy2640 121 DQGVCCIDEFDKMSA 135 (613)
Q Consensus 121 d~gv~ciDEfdkm~~ 135 (613)
...+++|||++.++.
T Consensus 126 ~~~vlviDe~~~l~~ 140 (250)
T 1njg_A 126 RFKVYLIDEVHMLSR 140 (250)
T ss_dssp SSEEEEEETGGGSCH
T ss_pred CceEEEEECcccccH
Confidence 357899999999987
No 72
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=44.99 E-value=75 Score=29.35 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=14.3
Q ss_pred cccCceeccccccCCCc
Q psy2640 119 LADQGVCCIDEFDKMSA 135 (613)
Q Consensus 119 Lad~gv~ciDEfdkm~~ 135 (613)
+...++++|||++.+..
T Consensus 102 ~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 102 LEQFDLICIDDVDAVAG 118 (242)
T ss_dssp GGGSSEEEEETGGGGTT
T ss_pred ccCCCEEEEeccccccC
Confidence 45678999999999876
No 73
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.18 E-value=58 Score=34.59 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=27.6
Q ss_pred CcceeecccCCCCCCCCCCccchhhccccccccc--cccEEEEecCCCChhhhHHHHHHHHHhh
Q psy2640 205 ARTSVIAAANPVGGHYNRAKTVAENLRMGQALLS--RFDLVFILLDNPDEHLDTLLSEHVMASL 266 (613)
Q Consensus 205 ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~lls--RFDLi~~l~d~~~~~~d~~la~~Il~~~ 266 (613)
.+..|+||+|-+ + .++++++- |||..+.+ +.|+.+. ...|+..|
T Consensus 286 ~~V~vIaATNrp----d---------~LDpAllRpGRfD~~I~i-~lPd~~~----R~~Il~~~ 331 (405)
T 4b4t_J 286 KNIKIIMATNRL----D---------ILDPALLRPGRIDRKIEF-PPPSVAA----RAEILRIH 331 (405)
T ss_dssp CCEEEEEEESCS----S---------SSCHHHHSTTSSCCEEEC-CCCCHHH----HHHHHHHH
T ss_pred CCeEEEeccCCh----h---------hCCHhHcCCCcCceEEEc-CCcCHHH----HHHHHHHH
Confidence 356789999953 1 37888885 99976554 4555432 23455555
No 74
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.72 E-value=87 Score=33.57 Aligned_cols=45 Identities=27% Similarity=0.448 Sum_probs=28.6
Q ss_pred CCcceeecccCCCCCCCCCCccchhhccccccccc--cccEEEEecCCCChhhhHHHHHHHHHhh
Q psy2640 204 PARTSVIAAANPVGGHYNRAKTVAENLRMGQALLS--RFDLVFILLDNPDEHLDTLLSEHVMASL 266 (613)
Q Consensus 204 ~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~lls--RFDLi~~l~d~~~~~~d~~la~~Il~~~ 266 (613)
..+..|+||+|-. + .|+++|+- |||..+ -++.||.+. ...|+..|
T Consensus 319 ~~~ViVIaATNrp----d---------~LDpALlRpGRfD~~I-~v~lPd~~~----R~~Il~~~ 365 (437)
T 4b4t_I 319 RGDVKVIMATNKI----E---------TLDPALIRPGRIDRKI-LFENPDLST----KKKILGIH 365 (437)
T ss_dssp SSSEEEEEEESCS----T---------TCCTTSSCTTTEEEEE-CCCCCCHHH----HHHHHHHH
T ss_pred CCCEEEEEeCCCh----h---------hcCHHHhcCCceeEEE-EcCCcCHHH----HHHHHHHH
Confidence 3456889999953 1 37888885 999754 346666432 23455555
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.68 E-value=29 Score=35.11 Aligned_cols=39 Identities=5% Similarity=-0.021 Sum_probs=22.6
Q ss_pred chhhhHHHHhhhhhcccchhhhhhhccCCchhhhhHHHHhh
Q psy2640 39 CYLVDIKVLMNDQIFNDQWKTFLQNLSNEPQHTINCLGLAM 79 (613)
Q Consensus 39 ~~~~dvK~~i~~qlfgg~~k~~~~~l~~~p~~~~~~l~la~ 79 (613)
+++..++..+...+-.|..+.+ .+.|.|+.++..+..++
T Consensus 28 ~g~~~~~~~L~~~i~~g~~~~~--ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDEGKLPHL--LFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCE--EEECSSSSSHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCceE--EEECCCCCCHHHHHHHH
Confidence 3455666666555555544432 36788888776655443
No 76
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=42.30 E-value=23 Score=35.62 Aligned_cols=19 Identities=37% Similarity=0.753 Sum_probs=15.6
Q ss_pred cceeecCCCCCCcchhhhH
Q psy2640 419 AHVLIVGDPGLGKSQMLHA 437 (613)
Q Consensus 419 idil~vgdpGtgKSq~l~~ 437 (613)
.++|+.|.||+||+.+.++
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 4688999999999998433
No 77
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=40.76 E-value=22 Score=35.99 Aligned_cols=15 Identities=7% Similarity=0.326 Sum_probs=12.9
Q ss_pred cCceeccccccCCCc
Q psy2640 121 DQGVCCIDEFDKMSA 135 (613)
Q Consensus 121 d~gv~ciDEfdkm~~ 135 (613)
+.-|+.|||.+.|+.
T Consensus 82 ~~kvviIdead~lt~ 96 (305)
T 2gno_A 82 TRKYVIVHDCERMTQ 96 (305)
T ss_dssp SSEEEEETTGGGBCH
T ss_pred CceEEEeccHHHhCH
Confidence 456889999999998
No 78
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=40.62 E-value=77 Score=24.30 Aligned_cols=36 Identities=8% Similarity=0.315 Sum_probs=30.2
Q ss_pred CCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEe
Q psy2640 456 SRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLK 494 (613)
Q Consensus 456 ~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~ 494 (613)
+++.+.++. ++..-|+..+++-.++..|.+.|.|-.
T Consensus 22 sGGildI~~---~a~kygV~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 22 NGGFLDIEH---FSKVYGVEKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp TTSEEEHHH---HHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCEEeHHH---HHHHhCCCHHHHHHHHHHHHHCCCeec
Confidence 566777766 677889999999999999999998754
No 79
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.80 E-value=25 Score=34.66 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=12.5
Q ss_pred CceeccccccCCCc
Q psy2640 122 QGVCCIDEFDKMSA 135 (613)
Q Consensus 122 ~gv~ciDEfdkm~~ 135 (613)
..+++|||++.|+.
T Consensus 108 ~~viiiDe~~~l~~ 121 (323)
T 1sxj_B 108 HKIVILDEADSMTA 121 (323)
T ss_dssp CEEEEEESGGGSCH
T ss_pred ceEEEEECcccCCH
Confidence 57899999999987
No 80
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.67 E-value=89 Score=33.41 Aligned_cols=49 Identities=29% Similarity=0.342 Sum_probs=29.6
Q ss_pred HHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccc--cccEEEEecCCCChh
Q psy2640 180 HQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLS--RFDLVFILLDNPDEH 253 (613)
Q Consensus 180 ~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~lls--RFDLi~~l~d~~~~~ 253 (613)
...|+..|.... -..+..|+||+|=+ + .++++|+. |||-.+.+ ..|+..
T Consensus 305 l~~lL~~lDg~~-----------~~~~vivI~ATNrp----~---------~LDpAllRpGRfD~~I~i-~lPd~~ 355 (437)
T 4b4t_L 305 LMELLTQMDGFD-----------NLGQTKIIMATNRP----D---------TLDPALLRPGRLDRKVEI-PLPNEA 355 (437)
T ss_dssp HHHHHHHHHSSS-----------CTTSSEEEEEESST----T---------SSCTTTTSTTSEEEEECC-CCCCHH
T ss_pred HHHHHHHhhccc-----------CCCCeEEEEecCCc----h---------hhCHHHhCCCccceeeec-CCcCHH
Confidence 445677676421 13456789998843 1 37788875 59975444 556543
No 81
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=38.40 E-value=39 Score=33.68 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=32.0
Q ss_pred HHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccc--cccEEEEecCCCChhh
Q psy2640 179 QHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLS--RFDLVFILLDNPDEHL 254 (613)
Q Consensus 179 ~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~lls--RFDLi~~l~d~~~~~~ 254 (613)
....++..|+.-. -+.+..|++++|... .+++++++ |||.++. +..|+.+.
T Consensus 138 ~~~~lL~~l~~~~-----------~~~~v~vi~atn~~~-------------~ld~al~r~gRf~~~i~-i~~p~~~~ 190 (301)
T 3cf0_A 138 VINQILTEMDGMS-----------TKKNVFIIGATNRPD-------------IIDPAILRPGRLDQLIY-IPLPDEKS 190 (301)
T ss_dssp HHHHHHHHHHSSC-----------TTSSEEEEEEESCGG-------------GSCGGGGSTTSSCEEEE-CCCCCHHH
T ss_pred HHHHHHHHhhccc-----------CCCCEEEEEecCCcc-------------ccChHHhcCCccceEEe-cCCcCHHH
Confidence 3455666676321 145688999999741 36778887 9996544 45555543
No 82
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=37.42 E-value=22 Score=37.94 Aligned_cols=135 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred cc-cCceeccccccCCC---cccccccchhcccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEE
Q psy2640 119 LA-DQGVCCIDEFDKMS---AQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISI 194 (613)
Q Consensus 119 La-d~gv~ciDEfdkm~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi 194 (613)
+. ...+++|||++.+. . .+..+...|+.-.
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~-------------------------------------------~q~~l~~~l~~l~--- 224 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTG-------------------------------------------VQTELFHTFNELH--- 224 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHH-------------------------------------------HHHHHHHHHHHHH---
T ss_pred hcCCCCEEEEeCcccccCChH-------------------------------------------HHHHHHHHHHHHH---
Q ss_pred ecccceeecCCcceeecccCCCCCCCCCCccchhhcccccccccccc--EEEEecCCCChhhhHHHHHHHHHhhcCCCCC
Q psy2640 195 AKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFD--LVFILLDNPDEHLDTLLSEHVMASLSGFQSN 272 (613)
Q Consensus 195 ~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFD--Li~~l~d~~~~~~d~~la~~Il~~~~~~~~~ 272 (613)
-.....|+++.||. .+-..+.++|+|||+ +++.+
T Consensus 225 --------~~~~~iIitt~~~~----------~~l~~l~~~L~sR~~~g~~i~l-------------------------- 260 (440)
T 2z4s_A 225 --------DSGKQIVICSDREP----------QKLSEFQDRLVSRFQMGLVAKL-------------------------- 260 (440)
T ss_dssp --------TTTCEEEEEESSCG----------GGCSSCCHHHHHHHHSSBCCBC--------------------------
T ss_pred --------HCCCeEEEEECCCH----------HHHHHHHHHHHhhccCCeEEEe--------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCC
Q psy2640 273 RNPSHSTQSFTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHS 352 (613)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~ 352 (613)
.+.+.+....++...-... ...+++++.+.|..
T Consensus 261 -----------------------------------~~p~~e~r~~iL~~~~~~~-~~~i~~e~l~~la~----------- 293 (440)
T 2z4s_A 261 -----------------------------------EPPDEETRKSIARKMLEIE-HGELPEEVLNFVAE----------- 293 (440)
T ss_dssp -----------------------------------CCCCHHHHHHHHHHHHHHH-TCCCCTTHHHHHHH-----------
T ss_pred -----------------------------------CCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHH-----------
Q ss_pred CCCcccchHHHHHHHHHHHhhhhcchhhhhhccccCCccchh
Q psy2640 353 VDATPVTTRQLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGH 394 (613)
Q Consensus 353 ~~~~~iT~R~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~ 394 (613)
..+=++|+++.+++.+.+. |...... ++.+++.++++.
T Consensus 294 --~~~gn~R~l~~~L~~~~~~-a~~~~~~-It~~~~~~~l~~ 331 (440)
T 2z4s_A 294 --NVDDNLRRLRGAIIKLLVY-KETTGKE-VDLKEAILLLKD 331 (440)
T ss_dssp --HCCSCHHHHHHHHHHHHHH-HHHSSSC-CCHHHHHHHTST
T ss_pred --hcCCCHHHHHHHHHHHHHH-HHHhCCC-CCHHHHHHHHHH
No 83
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=36.44 E-value=12 Score=36.73 Aligned_cols=30 Identities=10% Similarity=0.221 Sum_probs=20.8
Q ss_pred CCcceeecccCCCCCCCCCCccchhhccccc-cccccccEEEEe
Q psy2640 204 PARTSVIAAANPVGGHYNRAKTVAENLRMGQ-ALLSRFDLVFIL 246 (613)
Q Consensus 204 ~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~-~llsRFDLi~~l 246 (613)
+.++.|++++|+.. .+++ .+.+||+..+.+
T Consensus 165 ~~~~~ii~ttn~~~-------------~l~~~~l~~rf~~~i~~ 195 (272)
T 1d2n_A 165 GRKLLIIGTTSRKD-------------VLQEMEMLNAFSTTIHV 195 (272)
T ss_dssp TCEEEEEEEESCHH-------------HHHHTTCTTTSSEEEEC
T ss_pred CCCEEEEEecCChh-------------hcchhhhhcccceEEcC
Confidence 45677899999741 1333 678999887765
No 84
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=35.54 E-value=97 Score=30.63 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCceEEEechh
Q psy2640 442 KKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSAK 506 (613)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l~~~~ 506 (613)
.+.+++|.-.+. ....+++.| ++...|++...+..++..|.+.|++...+.+.|.+-.++
T Consensus 30 ~Ral~IL~~l~~--~~~~ltl~e---ia~~lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y~LG~~~ 89 (275)
T 3mq0_A 30 RRAVRILDLVAG--SPRDLTAAE---LTRFLDLPKSSAHGLLAVMTELDLLARSADGTLRIGPHS 89 (275)
T ss_dssp HHHHHHHHHHHH--CSSCEEHHH---HHHHHTCC--CHHHHHHHHHHTTSEEECTTSEEEECTHH
T ss_pred HHHHHHHHHHhh--CCCCCCHHH---HHHHHCcCHHHHHHHHHHHHHCCCEEECCCCcEEehHHH
Confidence 344444444432 234578877 588889999999999999999999998877889986443
No 85
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.54 E-value=52 Score=35.15 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=24.6
Q ss_pred cceeecccCCCCCCCCCCccchhhccccccccc--cccEEEEecCCCChh
Q psy2640 206 RTSVIAAANPVGGHYNRAKTVAENLRMGQALLS--RFDLVFILLDNPDEH 253 (613)
Q Consensus 206 r~svlAaaNP~~g~~~~~~~~~e~i~l~~~lls--RFDLi~~l~d~~~~~ 253 (613)
+..|+||+|-+ + .++++|+- |||..+.+.+-|+..
T Consensus 311 ~v~vI~aTN~~----~---------~LD~AllRpGRfd~~I~~p~lPd~~ 347 (428)
T 4b4t_K 311 NVKVIMATNRA----D---------TLDPALLRPGRLDRKIEFPSLRDRR 347 (428)
T ss_dssp SEEEEEEESCS----S---------SCCHHHHSSSSEEEEEECCSSCCHH
T ss_pred CEEEEEecCCh----h---------hcChhhhcCCcceEEEEcCCCCCHH
Confidence 45788998843 1 37888875 999877665666654
No 86
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=34.11 E-value=60 Score=32.64 Aligned_cols=15 Identities=33% Similarity=0.295 Sum_probs=12.9
Q ss_pred cCceeccccccCCCc
Q psy2640 121 DQGVCCIDEFDKMSA 135 (613)
Q Consensus 121 d~gv~ciDEfdkm~~ 135 (613)
...+++|||++.|+.
T Consensus 119 ~~~vliiDe~~~l~~ 133 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSR 133 (373)
T ss_dssp SSEEEEEECGGGSCH
T ss_pred CeEEEEEECcchhcH
Confidence 457999999999987
No 87
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=32.20 E-value=1e+02 Score=24.73 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=30.7
Q ss_pred ccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEec
Q psy2640 458 SVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKK 495 (613)
Q Consensus 458 ~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~ 495 (613)
+.+++++ ++...+++...+...|+.|.++|.+...
T Consensus 15 g~vsv~e---La~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 15 GRMEAAQ---ISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp CSBCHHH---HHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCcHHH---HHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4567777 6888999999999999999999999876
No 88
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.07 E-value=1.1e+02 Score=32.70 Aligned_cols=173 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred eeecCCCcchHHHHHHHHHHh---hCccccchHHh---------hhccchhhhHHHHhhhh----hcccchhhhhhhccC
Q psy2640 3 ISYKKDGPTDTKIKSCLDFIE---RHNHLYNVAEI---------EERRCYLVDIKVLMNDQ----IFNDQWKTFLQNLSN 66 (613)
Q Consensus 3 ~~Y~~~s~~~~~i~~~e~~~~---~~~~lYd~~~I---------~~~~~~~~dvK~~i~~q----lfgg~~k~~~~~l~~ 66 (613)
++|++..-..+-++.+.+.+. .||++|...-+ .|-|+|---+-+|++.+ +|.-....+.....|
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vG 257 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIG 257 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSS
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccc
Q ss_pred Cchhhh-hHHHHhhhhhcceEEEecccccccCceEEEEeeCCCCeeecCceeecccCceeccccccCCCcccccccchhc
Q psy2640 67 EPQHTI-NCLGLAMHHYIISVYVCGNTSTTSGLTVTLSREGGGDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTA 145 (613)
Q Consensus 67 ~p~~~~-~~l~la~~~~~r~~~~~g~~~s~~gLta~~~~~~~g~~~le~GalvLad~gv~ciDEfdkm~~~~~~~~~~~~ 145 (613)
.-+..+ .+...|....| -|++|||+|.+-. .|-.+-
T Consensus 258 ese~~ir~lF~~A~~~aP---------------------------------------~IifiDEiDal~~----~R~~~~ 294 (434)
T 4b4t_M 258 EGAKLVRDAFALAKEKAP---------------------------------------TIIFIDELDAIGT----KRFDSE 294 (434)
T ss_dssp HHHHHHHHHHHHHHHHCS---------------------------------------EEEEEECTHHHHC----CCSSGG
T ss_pred hHHHHHHHHHHHHHhcCC---------------------------------------eEEeecchhhhhh----ccCCCC
Q ss_pred ccccccccccccccccccccccccccccccchHHHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCcc
Q psy2640 146 KAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKT 225 (613)
Q Consensus 146 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~ 225 (613)
..-...+.+ ....|+..|.. ..=..+..|+||+|-+
T Consensus 295 ~~~~~~~~~------------------------~~~~lL~~ldg-----------~~~~~~ViVIaaTNrp--------- 330 (434)
T 4b4t_M 295 KSGDREVQR------------------------TMLELLNQLDG-----------FSSDDRVKVLAATNRV--------- 330 (434)
T ss_dssp GGTTHHHHH------------------------HHHHHHHHHTT-----------SCSSCSSEEEEECSSC---------
T ss_pred CCCchHHHH------------------------HHHHHHHHhhc-----------cCCCCCEEEEEeCCCc---------
Q ss_pred chhhccccccccc--cccEEEEecCCCChhhhHHHHHHHHHhh
Q psy2640 226 VAENLRMGQALLS--RFDLVFILLDNPDEHLDTLLSEHVMASL 266 (613)
Q Consensus 226 ~~e~i~l~~~lls--RFDLi~~l~d~~~~~~d~~la~~Il~~~ 266 (613)
-.|+++++. |||..+.+--.-...+-.-+..|.-+..
T Consensus 331 ----~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~ 369 (434)
T 4b4t_M 331 ----DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT 369 (434)
T ss_dssp ----CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC
T ss_pred ----hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC
No 89
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=30.53 E-value=41 Score=29.63 Aligned_cols=18 Identities=28% Similarity=0.887 Sum_probs=15.0
Q ss_pred cceeecCCCCCCcchhhh
Q psy2640 419 AHVLIVGDPGLGKSQMLH 436 (613)
Q Consensus 419 idil~vgdpGtgKSq~l~ 436 (613)
-++++.|.||+|||.+.+
T Consensus 44 ~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CceEEECCCCCCHHHHHH
Confidence 367899999999999843
No 90
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.36 E-value=1.9e+02 Score=31.22 Aligned_cols=45 Identities=24% Similarity=0.253 Sum_probs=27.3
Q ss_pred CCcceeecccCCCCCCCCCCccchhhccccccccc--cccEEEEecCCCChhhhHHHHHHHHHhh
Q psy2640 204 PARTSVIAAANPVGGHYNRAKTVAENLRMGQALLS--RFDLVFILLDNPDEHLDTLLSEHVMASL 266 (613)
Q Consensus 204 ~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~lls--RFDLi~~l~d~~~~~~d~~la~~Il~~~ 266 (613)
..+..|+||+|-. + .|+++++- |||..+.+ .-|+.+ -...|++.|
T Consensus 346 ~~~ViVIaATNrp----d---------~LDpALlRpGRFD~~I~i-~lPd~~----~R~~Ilk~~ 392 (467)
T 4b4t_H 346 RGNIKVMFATNRP----N---------TLDPALLRPGRIDRKVEF-SLPDLE----GRANIFRIH 392 (467)
T ss_dssp TTTEEEEEECSCT----T---------SBCHHHHSTTTCCEEECC-CCCCHH----HHHHHHHHH
T ss_pred CCcEEEEeCCCCc----c---------cCChhhhccccccEEEEe-CCcCHH----HHHHHHHHH
Confidence 3456789999843 1 37788864 99975444 556543 223455555
No 91
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=29.31 E-value=1.8e+02 Score=24.86 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=38.0
Q ss_pred cccHHHHHHHHHhC--CCCHHHHHHHHHHHhhCCcEEecCCceEEEechh
Q psy2640 459 VFTVTELKQLATSA--NISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSAK 506 (613)
Q Consensus 459 ~~t~~el~~~a~~~--gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l~~~~ 506 (613)
..+..+ +|... |++...+..-+..|.+.|++...+.+.|.|...-
T Consensus 27 ~~s~~e---LA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G 73 (111)
T 3b73_A 27 NGSPKE---LEDRDEIRISKSSVSRRLKKLADHDLLQPLANGVYVITEEG 73 (111)
T ss_dssp CBCHHH---HHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTTCEEECHHH
T ss_pred CCCHHH---HHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCceEEECchH
Confidence 456776 58888 9999999999999999999998888888887544
No 92
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=29.23 E-value=1.6e+02 Score=28.33 Aligned_cols=44 Identities=30% Similarity=0.511 Sum_probs=37.3
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCceEEEech
Q psy2640 459 VFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSA 505 (613)
Q Consensus 459 ~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l~~~ 505 (613)
..++.| ++...|++...+..++..|.+.|++.....+.|.+-.+
T Consensus 23 ~~~~~e---la~~~gl~~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~ 66 (249)
T 1mkm_A 23 DVSVSE---IAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYK 66 (249)
T ss_dssp CBCHHH---HHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEECTH
T ss_pred CCCHHH---HHHHHCcCHHHHHHHHHHHHHCCcEEECCCCcEEECHH
Confidence 467776 68889999999999999999999998875678998644
No 93
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=28.81 E-value=58 Score=31.17 Aligned_cols=102 Identities=19% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCcceeecccCCCCCCCCCCccchhhccccccccc--cccEEEEecCCCChhhhHHHHHHHHHhhcCCCCCCCCCCCCCC
Q psy2640 204 PARTSVIAAANPVGGHYNRAKTVAENLRMGQALLS--RFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRNPSHSTQS 281 (613)
Q Consensus 204 ~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~lls--RFDLi~~l~d~~~~~~d~~la~~Il~~~~~~~~~~~~~~~~~~ 281 (613)
+.+..|++++|+.. .+++++++ |||. .+....|+.+.-..+.++.+...
T Consensus 148 ~~~~~vI~~tn~~~-------------~l~~~l~r~~rf~~-~i~i~~P~~~~r~~il~~~~~~~--------------- 198 (257)
T 1lv7_A 148 NEGIIVIAATNRPD-------------VLDPALLRPGRFDR-QVVVGLPDVRGREQILKVHMRRV--------------- 198 (257)
T ss_dssp SSCEEEEEEESCTT-------------TSCGGGGSTTSSCE-EEECCCCCHHHHHHHHHHHHTTS---------------
T ss_pred CCCEEEEEeeCCch-------------hCCHHHcCCCcCCe-EEEeCCCCHHHHHHHHHHHHhcC---------------
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHhhhcCCCcCChHHHHHHHHHHHHHHhccCCCCCcccchH
Q psy2640 282 FTENPNSVQSDIPLSERLKPGPGEELPLIPAPLLHKYLAYARKYVSKPELSTEAALLLQEFYLNLRKHHHSVDATPVTTR 361 (613)
Q Consensus 282 ~~~~~~~~~~~~~l~~~l~~~~g~~~~~i~~~lLrkYI~~ar~~~~~P~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R 361 (613)
.++.+....++++.-..+ +.|
T Consensus 199 ---------------------------~l~~~~~~~~la~~~~G~--------------------------------~~~ 219 (257)
T 1lv7_A 199 ---------------------------PLAPDIDAAIIARGTPGF--------------------------------SGA 219 (257)
T ss_dssp ---------------------------CBCTTCCHHHHHHTCTTC--------------------------------CHH
T ss_pred ---------------------------CCCccccHHHHHHHcCCC--------------------------------CHH
Q ss_pred HHHHHHHHHHhhhhcchhhhhhccccCCccchh
Q psy2640 362 QLESLVRLTQDIQAEPNLFKLLVNSLCPSIFGH 394 (613)
Q Consensus 362 ~LEsliRLseA~~Ak~~l~~~v~~sd~~~I~~~ 394 (613)
+++.+++-|-.. |..+..+.|+.+|+..++..
T Consensus 220 dl~~l~~~a~~~-a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 220 DLANLVNEAALF-AARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHHHHHHHHHHH-HHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHhCCCcccHHHHHHHHHH
No 94
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=28.41 E-value=1.6e+02 Score=26.10 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=37.9
Q ss_pred CCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEec-CC-ceEEEechhh
Q psy2640 456 SRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKK-GK-QLYQLMSAKK 507 (613)
Q Consensus 456 ~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~-g~-~~~~l~~~~~ 507 (613)
++..++..+ +|+..|++..-+..++..|...|++... |. |=|.|...-+
T Consensus 25 ~~~~~s~~~---IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~ 75 (143)
T 3t8r_A 25 GQGCISLKS---IAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAE 75 (143)
T ss_dssp TSCCEEHHH---HHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCGG
T ss_pred CCCCcCHHH---HHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCcc
Confidence 334577776 6888999999999999999999998743 43 5688874443
No 95
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=28.35 E-value=1.7e+02 Score=23.58 Aligned_cols=53 Identities=19% Similarity=0.304 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhhcCCccccHHHHHHHHHhCCCCHH-HHHHHHHHHhhCCcEEecCC--ceEEEe
Q psy2640 442 KKFISVLQKKAEVQSRSVFTVTELKQLATSANISVD-NFFTFLTSLNDQGFLLKKGK--QLYQLM 503 (613)
Q Consensus 442 ~~~~~~l~~~~~~~~~~~~t~~el~~~a~~~gi~~~-~~~~~i~~L~~~G~i~~~g~--~~~~l~ 503 (613)
.+++..|+.. +..+..+ +|...|++.. .+..-+..|+.+|.+...+. -+|.|.
T Consensus 14 ~~IL~~Lk~~------g~~ta~e---iA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~w~LT 69 (79)
T 1xmk_A 14 EKICDYLFNV------SDSSALN---LAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWHLT 69 (79)
T ss_dssp HHHHHHHHHT------CCEEHHH---HHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEEEC
T ss_pred HHHHHHHHHc------CCcCHHH---HHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCCeEeC
Confidence 3455555442 3456555 6888999998 99999999999999985442 366664
No 96
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=28.33 E-value=4.4e+02 Score=25.91 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=25.1
Q ss_pred cccHHHH----HHHHHhCCC---CHHHHHHHHHHHhhCCcEEec
Q psy2640 459 VFTVTEL----KQLATSANI---SVDNFFTFLTSLNDQGFLLKK 495 (613)
Q Consensus 459 ~~t~~el----~~~a~~~gi---~~~~~~~~i~~L~~~G~i~~~ 495 (613)
.++.+++ .+++...|. +...+...++.|...|++...
T Consensus 305 ~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 305 VSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred ceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 3555444 445555554 347888999999999998763
No 97
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.13 E-value=85 Score=31.39 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=12.6
Q ss_pred ccCceeccccccCCCc
Q psy2640 120 ADQGVCCIDEFDKMSA 135 (613)
Q Consensus 120 ad~gv~ciDEfdkm~~ 135 (613)
.+.-++.|||.+.|+.
T Consensus 133 ~~~~vlilDE~~~L~~ 148 (354)
T 1sxj_E 133 HRYKCVIINEANSLTK 148 (354)
T ss_dssp -CCEEEEEECTTSSCH
T ss_pred CCCeEEEEeCccccCH
Confidence 3455999999999887
No 98
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=25.88 E-value=28 Score=34.24 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=34.6
Q ss_pred hHHHHHHHHH--------------HHHHHHhhcccccccccChhHHHHHHHHhhh
Q psy2640 553 QGFLLKKGKQ--------------LYQLMSARAKCELREEASKQDAQDVIDIMKW 593 (613)
Q Consensus 553 ~~~y~~l~es--------------LiRLseArAkl~lre~vt~~Da~~vv~im~~ 593 (613)
.+||.+|--+ ||-|++.+.++.=++.+|.+|+..||..++.
T Consensus 89 gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L~~ 143 (233)
T 1u5t_A 89 NDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLKS 143 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHhhh
Confidence 7899998644 7788888888876689999999999999865
No 99
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=25.18 E-value=44 Score=33.89 Aligned_cols=16 Identities=6% Similarity=0.144 Sum_probs=13.5
Q ss_pred ccCceeccccccCCCc
Q psy2640 120 ADQGVCCIDEFDKMSA 135 (613)
Q Consensus 120 ad~gv~ciDEfdkm~~ 135 (613)
+..-|+.|||.|.|+.
T Consensus 107 ~~~kvviIdead~l~~ 122 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTD 122 (334)
T ss_dssp SSCEEEEESCGGGBCH
T ss_pred CCcEEEEECchhhcCH
Confidence 3457889999999987
No 100
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=24.79 E-value=65 Score=26.41 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCc--eEEEe
Q psy2640 460 FTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQ--LYQLM 503 (613)
Q Consensus 460 ~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~--~~~l~ 503 (613)
+++.+ +|.+.|++...+...|..|+++|++...+++ .|.+.
T Consensus 31 ~sa~e---LAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~~ 73 (82)
T 1oyi_A 31 ATAAQ---LTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFMT 73 (82)
T ss_dssp EEHHH---HHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEESC
T ss_pred CCHHH---HHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCcceec
Confidence 77776 6999999999999999999999999876553 55554
No 101
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=24.65 E-value=48 Score=35.94 Aligned_cols=49 Identities=31% Similarity=0.291 Sum_probs=32.7
Q ss_pred HHHHHHhhhcCCeEEEecccceeecCCcceeecccCCCCCCCCCCccchhhccccccccc--cccEEEEecCCCCh
Q psy2640 179 QHQALLEAMEQQSISIAKASVVCSLPARTSVIAAANPVGGHYNRAKTVAENLRMGQALLS--RFDLVFILLDNPDE 252 (613)
Q Consensus 179 ~~~al~eameqq~isi~kagi~~~l~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~lls--RFDLi~~l~d~~~~ 252 (613)
....|+..|+.. .-+.+..|+||+|+. -.+++.+.+ ||+.++.+ ..|+.
T Consensus 324 ~~~~LL~~ld~~-----------~~~~~v~vIaaTn~~-------------~~Ld~al~r~gRf~~~i~i-~~P~~ 374 (489)
T 3hu3_A 324 IVSQLLTLMDGL-----------KQRAHVIVMAATNRP-------------NSIDPALRRFGRFDREVDI-GIPDA 374 (489)
T ss_dssp HHHHHHHHHHHS-----------CTTSCEEEEEEESCG-------------GGBCGGGGSTTSSCEEEEC-CCCCH
T ss_pred HHHHHHHHhhcc-----------ccCCceEEEEecCCc-------------cccCHHHhCCCcCceEEEe-CCCCH
Confidence 456677777732 235678899999974 126688888 99986554 44443
No 102
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=24.62 E-value=1.8e+02 Score=27.83 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=37.4
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCC-ceEEEechh
Q psy2640 459 VFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGK-QLYQLMSAK 506 (613)
Q Consensus 459 ~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~-~~~~l~~~~ 506 (613)
..+..| ++...|++...+..++..|.+.|++..... +.|.+-.++
T Consensus 21 ~~s~~e---la~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~ 66 (241)
T 2xrn_A 21 GLSLAA---IAQLVGLPRSTVQRIINALEEEFLVEALGPAGGFRLGPAL 66 (241)
T ss_dssp CEEHHH---HHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEEEECSHH
T ss_pred CCCHHH---HHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeEEECHHH
Confidence 567776 688899999999999999999999988654 789986443
No 103
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=24.49 E-value=65 Score=35.28 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=47.2
Q ss_pred cCChHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHHHHHhhhhcchhh-hhhccccCCccchhhHHHHHH----HHh
Q psy2640 330 ELSTEAALLLQEFYLNLRKHHHSVDATPVTTRQLESLVRLTQDIQAEPNLF-KLLVNSLCPSIFGHEMVKAGL----LLA 404 (613)
Q Consensus 330 ~Ls~eA~~~L~~~Yv~lR~~~~~~~~~~iT~R~LEsliRLseA~~Ak~~l~-~~v~~sd~~~I~~~~~~k~gl----~l~ 404 (613)
.+++++.+.+.....++++.........+....++.+..+-.....+.++. ....+....+++|.+.++..+ .+.
T Consensus 21 ~~~~~~~~~~~~el~~l~~~~~~~~e~~~~~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~ 100 (543)
T 3m6a_A 21 GMPDHVKETALKELNRYEKIPSSSAESSVIRNYIDWLVALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQ 100 (543)
T ss_dssp SCCCHHHHHHHHHHHSSCCCSSSCTTTTHHHHHHHHHHHSCSSCCCCCCCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCchHhHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 466677666666555555433332233344445555544332110010000 000011113456666555543 111
Q ss_pred hhCCcccCCCCCCCcceeecCCCCCCcchhhhH
Q psy2640 405 LFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHA 437 (613)
Q Consensus 405 l~GG~~~~~~~rg~idil~vgdpGtgKSq~l~~ 437 (613)
... ...+| ..+|++|.||+|||.+.++
T Consensus 101 ~~~-----~~~~g-~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 101 KLT-----KSLKG-PILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp HHS-----SSCCS-CEEEEESSSSSSHHHHHHH
T ss_pred Hhc-----ccCCC-CEEEEECCCCCCHHHHHHH
Confidence 111 01133 3678999999999998543
No 104
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=24.46 E-value=44 Score=33.36 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=13.5
Q ss_pred ccCceeccccccCCCc
Q psy2640 120 ADQGVCCIDEFDKMSA 135 (613)
Q Consensus 120 ad~gv~ciDEfdkm~~ 135 (613)
.+.++++|||++.+..
T Consensus 97 ~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSG 112 (324)
T ss_dssp HTCSEEEEECGGGGTT
T ss_pred cCCCEEEEcCcccccC
Confidence 4578999999999875
No 105
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=24.19 E-value=31 Score=33.74 Aligned_cols=19 Identities=26% Similarity=0.740 Sum_probs=15.8
Q ss_pred cceeecCCCCCCcchhhhH
Q psy2640 419 AHVLIVGDPGLGKSQMLHA 437 (613)
Q Consensus 419 idil~vgdpGtgKSq~l~~ 437 (613)
.++|+.|.||+||+.+.++
T Consensus 51 ~~vll~G~~GtGKT~la~~ 69 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARR 69 (310)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4788999999999998543
No 106
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=24.18 E-value=47 Score=29.31 Aligned_cols=17 Identities=35% Similarity=0.964 Sum_probs=14.5
Q ss_pred cceeecCCCCCCcchhh
Q psy2640 419 AHVLIVGDPGLGKSQML 435 (613)
Q Consensus 419 idil~vgdpGtgKSq~l 435 (613)
-++++.|.||+|||.+.
T Consensus 44 ~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIV 60 (187)
T ss_dssp CEEEEESCGGGCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 36788999999999984
No 107
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=23.95 E-value=71 Score=32.06 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=28.4
Q ss_pred CCcceeecccCCCCCCCCCCccchhhccccccccccccEEEEecCCCChhhhHHHHHHHH
Q psy2640 204 PARTSVIAAANPVGGHYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVM 263 (613)
Q Consensus 204 ~ar~svlAaaNP~~g~~~~~~~~~e~i~l~~~llsRFDLi~~l~d~~~~~~d~~la~~Il 263 (613)
+.++.+++++|... +.+ .+.+++.+||....+-+..++.+.-..+..+.+
T Consensus 165 ~~~~~~I~~t~~~~--------~~~--~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~ 214 (387)
T 2v1u_A 165 RVWVSLVGITNSLG--------FVE--NLEPRVKSSLGEVELVFPPYTAPQLRDILETRA 214 (387)
T ss_dssp ---CEEEEECSCST--------TSS--SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHH
T ss_pred CceEEEEEEECCCc--------hHh--hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH
Confidence 45677888888641 111 357788999976455566666554444444443
No 108
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=23.52 E-value=1.1e+02 Score=24.63 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=34.9
Q ss_pred ccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCceEEEech
Q psy2640 460 FTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSA 505 (613)
Q Consensus 460 ~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l~~~ 505 (613)
.+..+ ++...|++...+...+..|.+.|++.... +.|.+...
T Consensus 44 ~~~~e---La~~l~is~~tv~~~L~~L~~~Glv~~~~-g~y~l~~~ 85 (96)
T 1y0u_A 44 RSEEE---IMQTLSLSKKQLDYHLKVLEAGFCIERVG-ERWVVTDA 85 (96)
T ss_dssp CCHHH---HHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEECTT
T ss_pred CCHHH---HHHHHCcCHHHHHHHHHHHHHCCCEEEEC-CEEEECCC
Confidence 56666 57777999999999999999999998777 68887643
No 109
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=22.69 E-value=36 Score=29.84 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=15.4
Q ss_pred CcceeecCCCCCCcchhh
Q psy2640 418 DAHVLIVGDPGLGKSQML 435 (613)
Q Consensus 418 ~idil~vgdpGtgKSq~l 435 (613)
..++|+.|.||+||+...
T Consensus 24 ~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CSCEEEESSTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457899999999999883
No 110
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=22.31 E-value=1.8e+02 Score=25.10 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=28.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHhhCCcEE-ecCCceE
Q psy2640 467 QLATSANISVDNFFTFLTSLNDQGFLL-KKGKQLY 500 (613)
Q Consensus 467 ~~a~~~gi~~~~~~~~i~~L~~~G~i~-~~g~~~~ 500 (613)
++|.+.|++..-+.+++..|..+|++. .+|.|.|
T Consensus 43 ~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~~ 77 (134)
T 4ham_A 43 EFASRIGVNPNTVSKAYQELERQEVIITVKGKGTF 77 (134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEEE
Confidence 378899999999999999999999997 4555654
No 111
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=22.19 E-value=65 Score=32.42 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=26.3
Q ss_pred ccCCccchhhHHHHHHHHhhhCCcccCCCCCCCcceeecCCCCCCcchhhhH
Q psy2640 386 SLCPSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHA 437 (613)
Q Consensus 386 sd~~~I~~~~~~k~gl~l~l~GG~~~~~~~rg~idil~vgdpGtgKSq~l~~ 437 (613)
....+++|+..+...+......|. -.|+++.|.||+|||.+.++
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~--------~~~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGK--------LPHLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTC--------CCCEEEECSSSSSHHHHHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCC--------CceEEEECCCCCCHHHHHHH
Confidence 334445666555544433332221 23688999999999998544
No 112
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=22.17 E-value=3e+02 Score=23.44 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=36.0
Q ss_pred cccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCceEEEech
Q psy2640 459 VFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLMSA 505 (613)
Q Consensus 459 ~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l~~~ 505 (613)
..+..+ +|...|++...+...+..|.+.|++.....+.+.+...
T Consensus 22 ~~~~~e---la~~l~vs~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~ 65 (142)
T 1on2_A 22 YARVSD---IAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSK 65 (142)
T ss_dssp SCCHHH---HHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEECHH
T ss_pred CCCHHH---HHHHhCCCHHHHHHHHHHHHHCCCEEEeeCceEEEchh
Confidence 356666 68888999999999999999999998876666776643
No 113
>1zel_A Hypothetical protein RV2827C; winged-helix, helix-turn-HELI rickshaw, structural genomics, PSI; 1.93A {Mycobacterium tuberculosis} SCOP: a.4.5.83 d.377.1.1
Probab=22.04 E-value=1.4e+02 Score=30.06 Aligned_cols=50 Identities=22% Similarity=0.195 Sum_probs=42.9
Q ss_pred cCCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcE-EecCCceEEEech
Q psy2640 455 QSRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFL-LKKGKQLYQLMSA 505 (613)
Q Consensus 455 ~~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i-~~~g~~~~~l~~~ 505 (613)
.+...||.+|+.+...+.|++.+ +...++.|...|++ ..+-.|.|-+.-.
T Consensus 28 ~Gr~~FT~~E~~~~l~~~g~~~~-~~~AlrRL~kkG~L~~~P~rGfyvIVPP 78 (298)
T 1zel_A 28 DRPVVVTKEDLTQRLTEAGCGRD-PDSAIRELRRIGWLVQLPVKGTWAFIPP 78 (298)
T ss_dssp HCCSSEEHHHHHHHHHHTTCCCC-HHHHHHHHHHHTSEEECSSTTEEEECCT
T ss_pred cCCEEeeHHHHHHHHhhcCCChH-HHHHHHHHHhCCceeccCcCceEEEeCc
Confidence 36678999999877777788877 99999999999999 8899999998744
No 114
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=22.02 E-value=1.5e+02 Score=24.36 Aligned_cols=35 Identities=9% Similarity=0.133 Sum_probs=30.3
Q ss_pred ccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEec
Q psy2640 458 SVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKK 495 (613)
Q Consensus 458 ~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~ 495 (613)
+.+++++ +|...+++...++..|+.|.++|.+...
T Consensus 15 g~vsv~e---LA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 15 GRMEAKQ---LSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp CSEEHHH---HHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred CCCcHHH---HHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4577877 6888999999999999999999988765
No 115
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.21 E-value=55 Score=32.64 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=25.4
Q ss_pred cCCccchhhHHHHHHHHhhhCCcccCCCCCCCcceeecCCCCCCcchhhhH
Q psy2640 387 LCPSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHA 437 (613)
Q Consensus 387 d~~~I~~~~~~k~gl~l~l~GG~~~~~~~rg~idil~vgdpGtgKSq~l~~ 437 (613)
...+++|++.+...+...+.+|. ..|+|+.|.||+||+.+.++
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~--------~~~~ll~G~~G~GKT~la~~ 77 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN--------LPHMLFYGPPGTGKTSTILA 77 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT--------CCCEEEECSTTSSHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC--------CCEEEEECCCCCCHHHHHHH
Confidence 33445565555444433332211 13588999999999998543
No 116
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=20.75 E-value=52 Score=32.25 Aligned_cols=19 Identities=26% Similarity=0.580 Sum_probs=15.7
Q ss_pred CcceeecCCCCCCcchhhh
Q psy2640 418 DAHVLIVGDPGLGKSQMLH 436 (613)
Q Consensus 418 ~idil~vgdpGtgKSq~l~ 436 (613)
.-.+|+.|.||+||+.+.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp SEEEEEESCSSSSHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHH
Confidence 3478899999999999843
No 117
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=20.73 E-value=3.5e+02 Score=22.09 Aligned_cols=34 Identities=9% Similarity=0.186 Sum_probs=29.3
Q ss_pred CccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEE
Q psy2640 457 RSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLL 493 (613)
Q Consensus 457 ~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~ 493 (613)
..+++..+ ++...+++...+..+|..|+..|+|.
T Consensus 34 ~~gi~qke---La~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 34 NKGIWSRD---VRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp TTCEEHHH---HHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCcCHHH---HHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34577766 68889999999999999999999998
No 118
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=20.52 E-value=1.7e+02 Score=26.56 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=38.2
Q ss_pred CCccccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEec-CC-ceEEEechhhH
Q psy2640 456 SRSVFTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKK-GK-QLYQLMSAKKF 508 (613)
Q Consensus 456 ~~~~~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~-g~-~~~~l~~~~~~ 508 (613)
++..++..+ +|.+.+++..-+..++..|...|++... |. |=|.|...-+.
T Consensus 41 ~~~~~s~~e---IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~e 92 (159)
T 3lwf_A 41 GDGPISLRS---IAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEK 92 (159)
T ss_dssp TSCCBCHHH---HHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCTTT
T ss_pred CCCCcCHHH---HHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCHHH
Confidence 344577776 6888899999999999999999998854 33 56888744433
No 119
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=20.50 E-value=1.1e+02 Score=24.61 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHhhCCcEEecCCceEEE
Q psy2640 474 ISVDNFFTFLTSLNDQGFLLKKGKQLYQL 502 (613)
Q Consensus 474 i~~~~~~~~i~~L~~~G~i~~~g~~~~~l 502 (613)
|+.+++.++++.+..+|.+....+|.|+|
T Consensus 45 it~~eL~~fL~~~v~e~kL~~~~gG~YkL 73 (74)
T 1ldd_A 45 ITLQQLEGYLNTLADEGRLKYIANGSYEI 73 (74)
T ss_dssp CCHHHHHHHHHHHHHTTSEECCTTTEEEE
T ss_pred CCHHHHHHHHHHHHhCCeEEEeCCCEEeC
Confidence 57799999999999999998767788987
No 120
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=20.46 E-value=1.2e+02 Score=24.99 Aligned_cols=40 Identities=28% Similarity=0.301 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHhCCCCHHHHHHHHHHHhhCCcEEecCCceEEEe
Q psy2640 460 FTVTELKQLATSANISVDNFFTFLTSLNDQGFLLKKGKQLYQLM 503 (613)
Q Consensus 460 ~t~~el~~~a~~~gi~~~~~~~~i~~L~~~G~i~~~g~~~~~l~ 503 (613)
.+..+ +|...|++...+...++.|.++|++....++ |.+.
T Consensus 21 ~~~t~---La~~~~ls~~~~~~~l~~L~~~GLI~~~~~~-~~LT 60 (95)
T 1r7j_A 21 SPKTR---IMYGANLSYALTGRYIKMLMDLEIIRQEGKQ-YMLT 60 (95)
T ss_dssp BCHHH---HHHHHTCCHHHHHHHHHHHHHTTSEEEETTE-EEEC
T ss_pred CCHHH---HHHHhCcCHHHHHHHHHHHHHCCCeEEECCe-eEEC
Confidence 44554 6888999999999999999999999987655 6665
Done!