RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2640
(613 letters)
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 42.2 bits (98), Expect = 1e-04
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 389 PSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHA 437
+I G E +K LLL G VL+ GD G GKS + A
Sbjct: 7 SAIVGQEDMKLALLLTAV--------DPGIGGVLVFGDRGTGKSTAVRA 47
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 32.4 bits (72), Expect = 0.13
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 421 VLIVGDPGLGKSQMLHACCAAKKFISVLQKK----AEVQSRSVFTVTELKQLATSANISV 476
+ G+ G GK+Q+ H + + + + F ++++A + +
Sbjct: 39 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP 98
Query: 477 DNF 479
D
Sbjct: 99 DEV 101
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga
maritima [TaxId: 2336]}
Length = 144
Score = 30.1 bits (67), Expect = 0.40
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 9/127 (7%)
Query: 80 HHYIISVYVCGNTS----TTSGLTVTLS---REGGGDFALEAGALVLADQGVCCIDEFDK 132
HH+ + GN T S V + GG D A LVL C +
Sbjct: 3 HHHHMQARWIGNMMFHVRTDSNHDVLMDTKEEVGGKDAAPRPLELVLTGLMGCTGMDVVS 62
Query: 133 MSAQHQNGMLYTAKAMRGITSRQYTPAFITMSIHPVMGEKRHTMSAQHQA--LLEAMEQQ 190
+ + + + R I +H K + + ++ +++
Sbjct: 63 ILRKMKVIDQMKDFRIEIEYERTEEHPRIFTKVHLKYIFKFDGEPPKDKVEKAVQLSQEK 122
Query: 191 SISIAKA 197
S++
Sbjct: 123 YCSVSAI 129
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 29.7 bits (65), Expect = 0.55
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 420 HVLIVGDPGLGKSQMLHACCAAKKFI 445
V+I G P GKS +L+A + I
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAI 28
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 30.6 bits (67), Expect = 0.59
Identities = 7/56 (12%), Positives = 19/56 (33%)
Query: 219 HYNRAKTVAENLRMGQALLSRFDLVFILLDNPDEHLDTLLSEHVMASLSGFQSNRN 274
+ R+ +L ++ ++LD P +LD ++ + +
Sbjct: 280 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP 335
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 30.4 bits (68), Expect = 0.61
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 416 RGDAHVLIVGDPGLGKSQMLHACC 439
R + L+VG+ G+GK+ +
Sbjct: 37 RRKNNPLLVGESGVGKTAIAEGLA 60
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 29.7 bits (65), Expect = 0.97
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 421 VLIVGDPGLGKSQMLHACCAA 441
G G GK+Q++H C
Sbjct: 37 TEFAGVFGSGKTQIMHQSCVN 57
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 29.4 bits (64), Expect = 0.98
Identities = 7/26 (26%), Positives = 8/26 (30%)
Query: 420 HVLIVGDPGLGKSQMLHACCAAKKFI 445
V G GKS L+ K
Sbjct: 18 EVAFAGRSNAGKSSALNTLTNQKSLA 43
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 29.2 bits (64), Expect = 1.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 414 GSRGDAHVLIVGDPGLGKSQMLHACC 439
GS + +LI+G G GK+ +L+
Sbjct: 13 GSNKELRILILGLDGAGKTTILYRLQ 38
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 28.4 bits (63), Expect = 1.6
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 410 HSTNGSRGDAHVLIVGDPGLGKSQMLHACCAA 441
H VL+ G G+GKS+
Sbjct: 7 HGVLLEVFGVGVLLTGRSGIGKSECALDLINK 38
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 28.6 bits (62), Expect = 1.6
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 420 HVLIVGDPGLGKSQMLHACCAAKKFISV 447
+ + G +GKS +++ K
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLART 52
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 28.4 bits (63), Expect = 1.6
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 410 HSTNGSRGDAHVLIVGDPGLGKSQMLHACCAA 441
H VLI GD G+GKS+
Sbjct: 7 HGVLVDVYGVGVLITGDSGIGKSETALELIKR 38
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.8 bits (63), Expect = 1.7
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 421 VLIVGDPGLGKSQ-MLHACCAAKKFISVLQKKAEVQSRSVFTVTE 464
+V G GKS L +L+ ++ E
Sbjct: 32 GALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAE 76
>d1v97a3 d.41.1.1 (A:537-694) Xanthine oxidase, domain 5 (?) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 158
Score = 28.2 bits (62), Expect = 1.7
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 258 LSEHVMASLSGFQSNRNPSHSTQSFTENPNSVQSDIPLSERLK 300
L ++ FQ ++P + Q F E PN + + L
Sbjct: 2 LDPTYTSATLLFQ--KHPPANIQLFQEVPNGQSKEDTVGRPLP 42
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 29.0 bits (63), Expect = 1.8
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 413 NGSRGDAHVLIVGDPGLGKSQMLHACCAAKK 443
N ++G PG GK+ L K
Sbjct: 38 NPGHHYPRATLLGRPGTGKTVTLRKLWELYK 68
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 28.5 bits (62), Expect = 1.8
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 420 HVLIVGDPGLGKSQMLHA 437
+L++G GK+ +L
Sbjct: 4 RLLMLGLDNAGKTTILKK 21
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 28.5 bits (62), Expect = 1.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 420 HVLIVGDPGLGKSQMLHACC 439
+LI+G G GK+ +L+
Sbjct: 7 RILILGLDGAGKTTILYRLQ 26
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 28.1 bits (61), Expect = 1.8
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 420 HVLIVGDPGLGKSQMLH 436
+L+VG GK+ +L+
Sbjct: 2 RILMVGLDAAGKTTILY 18
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 28.5 bits (62), Expect = 1.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 419 AHVLIVGDPGLGKSQMLHACCAAKKFIS 446
A V +VG P GKS +L A A I+
Sbjct: 2 ADVGLVGYPNAGKSSLLAAMTRAHPKIA 29
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 28.4 bits (62), Expect = 2.2
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 421 VLIVGDPGLGKSQMLHACCAAK 442
VL VG GK+ + +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQ 24
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 27.9 bits (62), Expect = 2.2
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 410 HSTNGSRGDAHVLIVGDPGLGKSQMLHACCAA 441
H VLI GD G+GKS+
Sbjct: 6 HGVLVDIYGLGVLITGDSGVGKSETALELVQR 37
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 28.5 bits (62), Expect = 2.3
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 421 VLIVGDPGLGKSQMLHACCAA 441
+ G+ GKSQ+ H
Sbjct: 37 TELFGEFRTGKSQLCHTLAVT 57
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 28.2 bits (61), Expect = 2.6
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 421 VLIVGDPGLGKSQMLHACCAA 441
G+ GK+Q+ H C
Sbjct: 40 TEAFGEFRTGKTQLSHTLCVT 60
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 27.7 bits (60), Expect = 2.7
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 415 SRGDAHVLIVGDPGLGKSQMLHACC 439
+ ++ +G GK+ +LH
Sbjct: 10 YKKTGKLVFLGLDNAGKTTLLHMLK 34
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 27.8 bits (60), Expect = 3.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 421 VLIVGDPGLGKSQMLHACCAAKKFI 445
V IVG P +GKS +L+ K
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAP 32
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 28.1 bits (62), Expect = 3.0
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 420 HVLIVGDPGLGKSQMLHACC--AAKKFISVLQKKAEVQSRSVFTVTEL 465
+ L G GK+ + A K ++V R F +
Sbjct: 156 YWLFKGPIDSGKTTLAAALLELCGGKALNV----NLPLDRLNFELGVA 199
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 27.6 bits (60), Expect = 3.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 420 HVLIVGDPGLGKSQMLHACCAAKKFI 445
++IVG P +GKS +L+ + I
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAI 27
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 27.8 bits (60), Expect = 3.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 419 AHVLIVGDPGLGKSQMLHACCAAKKFI 445
A VLIVG P +GKS + + KK I
Sbjct: 1 ATVLIVGRPNVGKSTLFNKLVKKKKAI 27
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 27.7 bits (60), Expect = 3.2
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 419 AHVLIVGDPGLGKSQMLHACCAAKKFIS 446
A ++ G +GKS +++ K
Sbjct: 1 ATIIFAGRSNVGKSTLIYRLTGKKVRRG 28
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.3 bits (59), Expect = 3.4
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 418 DAHVLIVGDPGLGKSQMLHACC 439
+ + +VG GK+ ++
Sbjct: 2 EMELTLVGLQYSGKTTFVNVIA 23
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 27.7 bits (60), Expect = 3.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 420 HVLIVGDPGLGKSQMLHACCA 440
HV + G PG+GK+ ++H
Sbjct: 3 HVFLTGPPGVGKTTLIHKASE 23
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 27.3 bits (59), Expect = 3.6
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 420 HVLIVGDPGLGKSQMLHACC 439
V+IVG GK+ +L+
Sbjct: 17 KVIIVGLDNAGKTTILYQFS 36
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 90
Score = 26.2 bits (58), Expect = 3.7
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 468 LATSANISVDNFFTFLTSLNDQGFLLK---------KGKQLYQLMSAKKFISVLQKKAEV 518
+ AN+S ++ L D + + KG++L L +KF + + ++
Sbjct: 24 IMYGANLSYALTGRYIKMLMDLEIIRQEGKQYMLTKKGEEL--LEDIRKFNEMRKNMDQL 81
Query: 519 QSR 521
+ +
Sbjct: 82 KEK 84
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 27.6 bits (60), Expect = 3.7
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 420 HVLIVGDPGLGKSQMLHACC 439
+L++G GK+ +L
Sbjct: 18 RILLLGLDNAGKTTLLKQLA 37
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 27.6 bits (60), Expect = 3.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 419 AHVLIVGDPGLGKSQMLHACCAAKKFIS 446
A V +VG P +GKS +L +AK I+
Sbjct: 2 ADVGLVGFPSVGKSTLLSVVSSAKPKIA 29
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 339
Score = 27.9 bits (62), Expect = 3.8
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 4 SYKKDGPTDTKIKSCLDFIERHNHLYNVAE----IEER--RCYLVDIKVLMNDQIFNDQW 57
S+ K K+C + R+ L + +E + + + V +ND+ F +++
Sbjct: 10 SFANKAG---KPKACYVTLVRNKELKGLLSSIKYVENKINKKFPYPW-VFLNDEPFTEEF 65
Query: 58 KTFLQNLSNEP 68
K + +
Sbjct: 66 KEAVTKAVSSE 76
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 27.4 bits (59), Expect = 3.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
V+I+GD G+GK+ +++
Sbjct: 5 VIILGDSGVGKTSLMNQYV 23
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 27.8 bits (60), Expect = 3.9
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 421 VLIVGDPGLGKSQMLHACCAA 441
+ G+ GK+Q+ H
Sbjct: 26 TEMFGEFRTGKTQICHTLAVT 46
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.3 bits (59), Expect = 3.9
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
+++VG G+GKS +
Sbjct: 9 LVVVGGGGVGKSALTIQFI 27
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 27.3 bits (59), Expect = 4.0
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 420 HVLIVGDPGLGKSQMLHACC 439
++I G+PG+GK+ ++
Sbjct: 2 KIIITGEPGVGKTTLVKKIV 21
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 27.2 bits (59), Expect = 4.1
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 420 HVLIVGDPGLGKSQMLH 436
+L++G GK+ +L+
Sbjct: 14 RILMLGLDAAGKTTILY 30
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 27.4 bits (59), Expect = 4.1
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
+++VG+ +GKS M+ C
Sbjct: 5 MVVVGNGAVGKSSMIQRYC 23
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.6 bits (60), Expect = 4.2
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 421 VLIVGDPGLGKSQ-MLHACCAAKKF 444
+L G G GK+ + A
Sbjct: 29 ILATGATGTGKTLLVSRFVENACAN 53
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.3 bits (59), Expect = 4.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
+L +G GK+ +LH
Sbjct: 3 LLFLGLDNAGKTTLLHMLK 21
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 27.6 bits (60), Expect = 4.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 415 SRGDAHVLIVGDPGLGKSQML 435
H+L+ G G GKS +L
Sbjct: 47 DAEPRHLLVNGATGTGKSVLL 67
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 27.0 bits (58), Expect = 4.5
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 421 VLIVGDPGLGKSQMLH 436
V+++G+ G+GKS + +
Sbjct: 6 VVLIGEQGVGKSTLAN 21
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 27.3 bits (59), Expect = 4.6
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
+++VGD GK+ +LH
Sbjct: 5 IVVVGDSQCGKTALLHVFA 23
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 27.4 bits (59), Expect = 4.8
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 391 IFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACC 439
+ +E + L + R H+L+ G G GK A
Sbjct: 13 LSHNEELTNFLKSLS-------DQPRDLPHLLLYGPNGTGKKTRCMALL 54
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 27.0 bits (58), Expect = 4.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 421 VLIVGDPGLGKSQMLH 436
VL++G PG+GKS +
Sbjct: 4 VLLLGAPGVGKSALAR 19
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 27.0 bits (58), Expect = 4.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
V+I+GD G+GK+ ++H
Sbjct: 5 VIILGDSGVGKTSLMHRYV 23
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 27.2 bits (59), Expect = 5.3
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 391 IFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLHACC 439
G E +K L + L H+L+ G PGLGK+ + H
Sbjct: 11 YIGQERLKQKLRVYLEAA---KARKEPLEHLLLFGPPGLGKTTLAHVIA 56
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 27.1 bits (59), Expect = 5.4
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 420 HVLIVGDPGLGKSQMLHACCAAKKFIS 446
+L++G G+GKS +++ +
Sbjct: 34 TILVMGKGGVGKSSTVNSIIGERVVSI 60
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 26.8 bits (58), Expect = 5.5
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
V++VG G+GKS +
Sbjct: 7 VIMVGSGGVGKSALTLQFM 25
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 26.8 bits (58), Expect = 5.6
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
+LI+G+ +GK+ L
Sbjct: 8 ILIIGNSSVGKTSFLFRYA 26
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 25.8 bits (56), Expect = 5.6
Identities = 12/73 (16%), Positives = 18/73 (24%), Gaps = 1/73 (1%)
Query: 377 PNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDPGLGKSQMLH 436
P+ F+ L G E K + F G S V I +
Sbjct: 3 PDFFQGKHFFLYGEFPGDERRKLIRYVTAFNGELEDYMSDRVQFV-ITAQEWDPSFEEAL 61
Query: 437 ACCAAKKFISVLQ 449
+ F+
Sbjct: 62 MDNPSLAFVRPRW 74
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 26.9 bits (58), Expect = 6.0
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
++VGD +GK+ +L +
Sbjct: 8 CVVVGDGAVGKTCLLISYT 26
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 26.9 bits (58), Expect = 6.1
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 421 VLIVGDPGLGKSQMLHACCAAK 442
++I G GK+ +L
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDS 27
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.5 bits (57), Expect = 6.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 421 VLIVGDPGLGKSQMLH 436
+++VGD G+GKS +
Sbjct: 7 LVVVGDGGVGKSALTI 22
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 26.8 bits (58), Expect = 6.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 421 VLIVGDPGLGKSQMLH 436
L++G+ G GKS +LH
Sbjct: 8 FLVIGNAGTGKSCLLH 23
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.5 bits (57), Expect = 6.2
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
++++G G+GKS +
Sbjct: 6 LVVLGSGGVGKSALTVQFV 24
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.5 bits (57), Expect = 6.3
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 418 DAHVLIVGDPGLGKSQMLH 436
+ + I G G+GKS ++
Sbjct: 2 EVKLAIFGRAGVGKSALVV 20
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 26.7 bits (58), Expect = 6.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 421 VLIVGDPGLGKSQMLH 436
+LI+G+ G+GKS +L
Sbjct: 10 ILIIGESGVGKSSLLL 25
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 26.5 bits (57), Expect = 6.5
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
+++VG G+GKS +
Sbjct: 6 LVVVGAGGVGKSALTIQLI 24
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.4 bits (57), Expect = 6.6
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
V+++G G+GKS +
Sbjct: 6 VVVLGSGGVGKSALTVQFV 24
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.5 bits (57), Expect = 6.6
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
+++VG G+GKS +
Sbjct: 8 LVVVGGGGVGKSALTIQFI 26
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 26.8 bits (58), Expect = 6.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
V++VGD G+GK+ +L
Sbjct: 9 VMLVGDSGVGKTCLLVRFK 27
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 26.6 bits (57), Expect = 6.7
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 421 VLIVGDPGLGKSQMLH 436
+ I+G +GKS +
Sbjct: 7 IAILGYRSVGKSSLTI 22
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 26.8 bits (59), Expect = 6.7
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 415 SRGDAHVLIVGDPGLGKSQMLHAC 438
S + VLI G+ G+GK +
Sbjct: 20 SCAECPVLITGESGVGKEVVARLI 43
Score = 26.8 bits (59), Expect = 6.8
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 108 GDFALEAGALVLADQGVCCIDEFDKMSAQHQNGMLYTAKAMRGITSRQYTP 158
G + + G LAD G +DE ++S + Q AK +R I S ++
Sbjct: 81 GAVSSKEGFFELADGGTLFLDEIGELSLEAQ------AKLLRVIESGKFYR 125
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 26.5 bits (57), Expect = 6.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 421 VLIVGDPGLGKSQMLH 436
V ++GD G+GKS ++
Sbjct: 7 VCLLGDTGVGKSSIMW 22
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 26.6 bits (58), Expect = 6.8
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 421 VLIVGDPGLGKSQMLH 436
+L++GD G+GK+ +L
Sbjct: 9 LLLIGDSGVGKTCVLF 24
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 26.5 bits (57), Expect = 6.9
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 418 DAHVLIVGDPGLGKSQMLHACC 439
+ + ++GD GKS ++H
Sbjct: 5 ELRLGVLGDARSGKSSLIHRFL 26
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 26.9 bits (58), Expect = 7.0
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 421 VLIVGDPGLGKSQMLHACCAA 441
L+ G G GK+
Sbjct: 29 TLVSGTSGTGKTLFSIQFLYN 49
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 26.5 bits (57), Expect = 7.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
++IVGD GK+ +L
Sbjct: 5 LVIVGDGACGKTCLLIVNS 23
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.5 bits (57), Expect = 7.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 421 VLIVGDPGLGKSQMLH 436
V + G G+GKS ++
Sbjct: 5 VAVFGAGGVGKSSLVL 20
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 26.4 bits (57), Expect = 7.4
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 421 VLIVGDPGLGKSQMLH 436
+L +GD G+GK+ L+
Sbjct: 8 LLALGDSGVGKTTFLY 23
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 26.4 bits (57), Expect = 7.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 421 VLIVGDPGLGKSQMLH 436
+I+GD G+GKS +LH
Sbjct: 7 YIIIGDMGVGKSCLLH 22
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.3 bits (57), Expect = 7.4
Identities = 4/16 (25%), Positives = 13/16 (81%)
Query: 421 VLIVGDPGLGKSQMLH 436
++++G+ G+GK+ ++
Sbjct: 8 IVLIGNAGVGKTCLVR 23
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 26.4 bits (57), Expect = 7.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 421 VLIVGDPGLGKSQMLH 436
V+++GD G+GKS +L
Sbjct: 7 VVLIGDSGVGKSNLLS 22
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 26.3 bits (57), Expect = 7.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 421 VLIVGDPGLGKSQMLH 436
+L++GD G+GKS +L
Sbjct: 5 ILLIGDSGVGKSCLLV 20
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 26.7 bits (58), Expect = 7.7
Identities = 20/178 (11%), Positives = 54/178 (30%), Gaps = 10/178 (5%)
Query: 368 RLTQDIQAEPNLFKLLVNSLCPSIFGHEMVKAGLLLALFGGCHSTNGSRGDAHVLIVGDP 427
+ ++ + L + + + E ++ L C + + + G
Sbjct: 1 QFSRQMLDRKLLLGNVPKQ--MTCYIREYHVDRVIKKLDEMCDLDSF-----FLFLHGRA 53
Query: 428 GLGKSQMLHACCAAKKFISVLQKKAEV---QSRSVFTVTELKQLATSANISVDNFFTFLT 484
G GKS + + + + + V S + T + ++
Sbjct: 54 GSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFP 113
Query: 485 SLNDQGFLLKKGKQLYQLMSAKKFISVLQKKAEVQSRSVFTVTELKQLATSANISVDN 542
S+ ++ K L+ + V + ++ L+ L T+ ++ + N
Sbjct: 114 SVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISN 171
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 26.5 bits (57), Expect = 7.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
V+++GD G+GKS +++
Sbjct: 9 VILLGDGGVGKSSLMNRYV 27
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 26.6 bits (57), Expect = 7.9
Identities = 4/16 (25%), Positives = 12/16 (75%)
Query: 421 VLIVGDPGLGKSQMLH 436
++++G+ +GKS ++
Sbjct: 6 LVLLGEAAVGKSSIVL 21
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 26.5 bits (57), Expect = 8.3
Identities = 3/16 (18%), Positives = 11/16 (68%)
Query: 421 VLIVGDPGLGKSQMLH 436
++ +G+ +GK+ ++
Sbjct: 3 LVFLGEQSVGKTSLIT 18
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 26.5 bits (57), Expect = 8.5
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
++VGD +GK+ +L +
Sbjct: 6 CVVVGDGAVGKTCLLISYT 24
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 26.1 bits (56), Expect = 8.7
Identities = 4/16 (25%), Positives = 12/16 (75%)
Query: 421 VLIVGDPGLGKSQMLH 436
++++GD +GK+ + +
Sbjct: 5 IIVIGDSNVGKTCLTY 20
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.4 bits (57), Expect = 9.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 421 VLIVGDPGLGKSQMLH 436
+I+GD G+GKS +L
Sbjct: 6 YIIIGDTGVGKSCLLL 21
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.2 bits (56), Expect = 9.3
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 421 VLIVGDPGLGKSQMLH 436
+++VGD G GK+ +
Sbjct: 6 LVLVGDGGTGKTTFVK 21
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 26.1 bits (56), Expect = 9.5
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 421 VLIVGDPGLGKSQMLHACC 439
++VGD +GK+ +L +
Sbjct: 12 CVVVGDGAVGKTCLLMSYA 30
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 26.4 bits (57), Expect = 9.7
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 421 VLIVGDPGLGKSQMLH 436
+L++G+ G+GKS +L
Sbjct: 9 LLLIGNSGVGKSCLLL 24
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 26.1 bits (56), Expect = 9.7
Identities = 4/16 (25%), Positives = 12/16 (75%)
Query: 421 VLIVGDPGLGKSQMLH 436
V+++G+ +GK+ ++
Sbjct: 6 VVLLGEGCVGKTSLVL 21
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.379
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,105,070
Number of extensions: 94201
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 437
Number of HSP's successfully gapped: 94
Length of query: 613
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 522
Effective length of database: 1,158,166
Effective search space: 604562652
Effective search space used: 604562652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.3 bits)