BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2643
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 64/79 (81%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
CK CGK+FKR DTRPYPCQYCGKRFHQKSDMKKHT+IHTGEKPHKC VC
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 61 GKAFSQSSNLITHLRKHTG 79
GKAFSQSSNLITH RKHTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
+ C+ CGK F + S + H IH+ +P+ C CGK F Q S++ H HTG KP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 87 LCDKAFQRKVDLRRH 101
+C KAF + +L H
Sbjct: 62 VCGKAFSQSSNLITH 76
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 95.5 bits (236), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 59/102 (57%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
C +CGK+F R +PY C CGK F K D+ +H HTGEKP+KC C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
GK+FSQ +NL H R HTG KP++C C K+F + LR H+
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQ 125
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 58/102 (56%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
C +CGK+F + +PY C CGK F Q + ++ H HTGEKP+KC C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
GK+FS+ NL TH R HTG KP+ C C K+F R+ L H+
Sbjct: 140 GKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 59/102 (57%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
C +CGK+F +PY C CGK F Q+++++ H HTGEKP+ C C
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Query: 61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
GK+FSQ ++L H R HTG KP+ C C K+F R+ +L H+
Sbjct: 112 GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ 153
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
+PY C CGK F + + +H HTGEKP+KC CGK+FS +L H R HTG KP+
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 85 CGLCDKAFQRKVDLRRHR 102
C C K+F ++ +LR H+
Sbjct: 80 CPECGKSFSQRANLRAHQ 97
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
C +CGK+F + +PY C CGK F ++ ++ H HTGEKP+KC C
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Query: 61 GKAFSQSSNLITHLRKHTGYK 81
GK+FS+ L H R HTG K
Sbjct: 168 GKSFSRRDALNVHQRTHTGKK 188
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ GEKP+ C CGK+FS+S +L H R HTG KP+ C C K+F K DL RH+
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 67 SSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
SS+ + G KP++C C K+F R L H+
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQ 41
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 89.0 bits (219), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 53/78 (67%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
+PY C CGK F Q S+++KH HTGEKP+KC CGK+FSQSS+L H R HTG KP+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 85 CGLCDKAFQRKVDLRRHR 102
C C K+F R L RH+
Sbjct: 63 CPECGKSFSRSDHLSRHQ 80
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 46/81 (56%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
C +CGK+F + +PY C CGK F Q SD++KH HTGEKP+KC C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPEC 66
Query: 61 GKAFSQSSNLITHLRKHTGYK 81
GK+FS+S +L H R H K
Sbjct: 67 GKSFSRSDHLSRHQRTHQNKK 87
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
EKP+KC CGK+FSQSSNL H R HTG KP+ C C K+F + DL++H+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQ 52
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 25 RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
RPY C + C +RF + +D+ +H IHTG+KP +C +C + FS+S +L TH+R HTG KP
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 83 FSCGLCDKAFQRKVDLRRH 101
F+C +C + F R + +RH
Sbjct: 63 FACDICGRKFARSDERKRH 81
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 2 KQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCG 61
+ C + F R +P+ C+ C + F + + H HTGEKP C +CG
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 62 KAFSQSSNLITHLRKHTGYK 81
+ F++S H + H K
Sbjct: 70 RKFARSDERKRHTKIHLRQK 89
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
C+ C + F R +P+ C CG++F + + K+HT IH +K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 25 RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
RPY C + C +RF S++ +H IHTG+KP +C +C + FS+S +L TH+R HTG KP
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 83 FSCGLCDKAFQRKVDLRRH 101
F+C +C + F R + +RH
Sbjct: 63 FACDICGRKFARSDERKRH 81
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
+P+ C+ C + F + + H HTGEKP C +CG+ F++S H + H K
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
C+ C + F R +P+ C CG++F + + K+HT IH +K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 25 RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
RPY C + C +RF Q + +H IHTG+KP +C +C + FS+S +L TH+R HTG KP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 83 FSCGLCDKAFQRKVDLRRH 101
F+C +C + F R + +RH
Sbjct: 63 FACDICGRKFARSDERKRH 81
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
+P+ C+ C + F + + H HTGEKP C +CG+ F++S H + H K
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
C+ C + F R +P+ C CG++F + + K+HT IH +K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 25 RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
RPY C + C +RF + +++ +H IHTG+KP +C +C + FS+S +L TH+R HTG KP
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 83 FSCGLCDKAFQRKVDLRRH 101
F+C +C + F R + +RH
Sbjct: 63 FACDICGRKFARSDERKRH 81
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 2 KQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCG 61
+ C + F R +P+ C+ C + F + + H HTGEKP C +CG
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 62 KAFSQSSNLITHLRKHTGYK 81
+ F++S H + H K
Sbjct: 70 RKFARSDERKRHTKIHLRQK 89
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
C+ C + F R +P+ C CG++F + + K+HT IH +K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 25 RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
RPY C + C +RF + ++ +H IHTG+KP +C +C + FS+S +L TH+R HTG KP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 83 FSCGLCDKAFQRKVDLRRH 101
F+C +C + F R + +RH
Sbjct: 63 FACDICGRKFARSDERKRH 81
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 2 KQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCG 61
+ C + F R +P+ C+ C + F + + H HTGEKP C +CG
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 62 KAFSQSSNLITHLRKHTGYK 81
+ F++S H + H K
Sbjct: 70 RKFARSDERKRHTKIHLRQK 89
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
C+ C + F R +P+ C CG++F + + K+HT IH +K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 25 RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
RPY C + C +RF + ++ +H IHTG+KP +C +C + FS+S +L TH+R HTG KP
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 83 FSCGLCDKAFQRKVDLRRH 101
F+C +C + F R + +RH
Sbjct: 62 FACDICGRKFARSDERKRH 80
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%)
Query: 2 KQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCG 61
+ C + F R +P+ C+ C + F + + H HTGEKP C +CG
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 62 KAFSQSSNLITHLRKH 77
+ F++S H + H
Sbjct: 69 RKFARSDERKRHTKIH 84
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIH 49
C+ C + F R +P+ C CG++F + + K+HT IH
Sbjct: 36 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 25 RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
RPY C + C +RF + ++ +H IHTG+KP +C +C + FS+S +L TH+R HTG KP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 83 FSCGLCDKAFQRKVDLRRH 101
F+C +C + F R + +RH
Sbjct: 63 FACDICGRKFARSDERKRH 81
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%)
Query: 2 KQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCG 61
+ C + F R +P+ C+ C + F + + H HTGEKP C +CG
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 62 KAFSQSSNLITHLRKH 77
+ F++S H + H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIH 49
C+ C + F R +P+ C CG++F + + K+HT IH
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 25 RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
RPY C + C +RF QK+++ H IHTG+KP +C +C + FSQ ++L H+R HTG KP
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 83 FSCGLCDKAF 92
F+C +C + F
Sbjct: 63 FACDICGRKF 72
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
+P+ C+ C + F Q++ + H HTGEKP C +CG+ F+ H + H K
Sbjct: 33 KPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
C+ C + F + +P+ C CG++F +HT IH +K
Sbjct: 37 CRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 25 RPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
RPY C + C +RF QK+++ H IHTG+KP +C +C + FSQ + L H+R HTG KP
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 83 FSCGLCDKAF 92
F+C +C + F
Sbjct: 63 FACDICGRKF 72
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFS 65
+P+ C+ C + F Q + + +H HTGEKP C +CG+ F+
Sbjct: 33 KPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFA 73
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
C+ C + F + +P+ C CG++F +HT IH +K
Sbjct: 37 CRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
YPCQ CGK F KS +H +H G +P+ C VCGK F +L+ H++ HTG KP+ C
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 87 LCDKAFQRKVDLRRHRES 104
+C K F + RH S
Sbjct: 70 ICAKRFMWRDSFHRHVTS 87
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%)
Query: 3 QCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGK 62
QCGK+F RPY C CGK+F K + H IHTG KP++C +C K
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 63 AFSQSSNLITHL 74
F + H+
Sbjct: 74 RFMWRDSFHRHV 85
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 17/46 (36%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHT 46
C CGK FK +PY C C KRF + +H
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKP 82
R + C CGK F + S +K+H +HTGEKP +C CGK FS NL TH+R HTG +P
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 92
Query: 83 FSCGL--CDKAFQRKVDLRRH 101
+ C C+K F + +L+ H
Sbjct: 93 YVCPFDGCNKKFAQSTNLKSH 113
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 28 PCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGL 87
P + C K F S M+KH + H G + H C CGKAF +SS L H HTG KPF C
Sbjct: 9 PHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF 67
Query: 88 --CDKAFQRKVDLRRH 101
C K F +LR H
Sbjct: 68 EGCGKRFSLDFNLRTH 83
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCV 58
C +CGK F +P+ C + CGKRF +++ H IHTG++P+ C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 59 V--CGKAFSQSSNLITHLRKHTGYK 81
C K F+QS+NL +H+ H K
Sbjct: 97 FDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 54 PHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
PHK C K F +S + HL H G + C C KAF L+RH+
Sbjct: 9 PHK--GCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQ 54
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 39/62 (62%)
Query: 23 DTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
+ R Y C CGK F SD+ KH HTGEKP+KC CGKAF Q S+LI H R HTG P
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Query: 83 FS 84
S
Sbjct: 75 SS 76
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 55 HKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDL 98
+KC CGK+FS SS+L H R HTG KP+ C C KAF ++ L
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
C +CGK+F +PY C CGK F Q+S + H +HTG P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 39/54 (72%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHT 78
+PY C CGK F + S + +H +HTGEKP+KC+ CGKAFSQ+S LI H R HT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
EKP+ CV CGKAFS+SS L+ H R HTG KP+ C C KAF + L H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHT 50
C +CGK F R +PY C CGK F Q S + H IHT
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
+PY C + C +RF + +K+H HTG KP +C C + FS+S +L TH R HTG KP
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP 94
Query: 83 FSCGL--CDKAFQRKVDLRRH 101
FSC C K F R +L RH
Sbjct: 95 FSCRWPSCQKKFARSDELVRH 115
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 23 DTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHT 78
+ RP+ C Y C KR+ + S ++ H+ HTGEKP++C C + FS+S L H R+HT
Sbjct: 3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 79 GYKPFSCGLCDKAFQRKVDLRRH 101
G KPF C C + F R L+ H
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTH 85
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 2 KQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV-- 59
K C + F R +P+ C+ C ++F + +K HT HTGEKP C
Sbjct: 42 KDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPS 101
Query: 60 CGKAFSQSSNLITHLRKH 77
C K F++S L+ H H
Sbjct: 102 CQKKFARSDELVRHHNMH 119
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 50 TGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRHRESQ 105
+ ++P C C K + + S+L H RKHTG KP+ C C++ F R L+RH+
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 106 HPGSPAQ 112
P Q
Sbjct: 62 TGVKPFQ 68
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 24 TRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTG 79
T + C Y CGK + + S +K H HTGEKP+ C CG F++S L H RKHTG
Sbjct: 4 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
Query: 80 YKPFSCGLCDKAFQRKVDLRRH 101
++PF C CD+AF R L H
Sbjct: 64 HRPFQCQKCDRAFSRSDHLALH 85
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 4 CGKTFKRXXXXXXXXXXXXDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVVCG 61
CGKT+ + +PY C + CG +F + ++ +H HTG +P +C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 62 KAFSQSSNLITHLRKH 77
+AFS+S +L H+++H
Sbjct: 74 RAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 24 TRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTG 79
T + C Y CGK + + S +K H HTGEKP+ C CG F++S L H RKHTG
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Query: 80 YKPFSCGLCDKAFQRKVDLRRH 101
++PF C CD+AF R L H
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALH 84
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 4 CGKTFKRXXXXXXXXXXXXDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVVCG 61
CGKT+ + +PY C + CG +F + ++ +H HTG +P +C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 62 KAFSQSSNLITHLRKH 77
+AFS+S +L H+++H
Sbjct: 73 RAFSRSDHLALHMKRH 88
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGY 80
R + C Y C K + + S +K H HTGEKP+KC C F++S L H RKHTG
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 81 KPFSCGLCDKAFQRKVDLRRH 101
KPF CG+C+++F R L H
Sbjct: 74 KPFQCGVCNRSFSRSDHLALH 94
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 4 CGKTFKRXXXXXXXXXXXXDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVVCG 61
C K + + +PY C + C RF + ++ +H HTG KP +C VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 62 KAFSQSSNLITHLRKH 77
++FS+S +L H+++H
Sbjct: 83 RSFSRSDHLALHMKRH 98
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 26 PYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
P+ C+ CGK F +K +K H HTG KP+KC C A + SS+L HLR H+ +PF C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 86 GLCDKA----FQRKVDLRRHRESQHPGS 109
+C A Q V LR H P S
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 37/79 (46%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
C+ CGK F R +PY C+ C S + KH IH+ E+P KC +C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 61 GKAFSQSSNLITHLRKHTG 79
A SS L HLR HTG
Sbjct: 71 PYASRNSSQLTVHLRSHTG 89
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
+PY C C F K ++ H +HTGEKP++C +CG F++ +NL TH R H+G KP
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+KP+KC C +F NL +H HTG KP+ C +C F R +L+ H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 29 CQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCG 86
C GK F K + H +HTGEKP C CGK F++S NL H R HTG KPF C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 87 L--CDKAFQRKVDLRRH 101
CD+ F D ++H
Sbjct: 125 FEGCDRRFANSSDRKKH 141
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCV 58
C + GK+FK +P+PC + CGK F + ++K H HTGEKP KC
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 59 V--CGKAFSQSSNLITHLRKHTGYK 81
C + F+ SS+ H+ HT K
Sbjct: 125 FEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 28 PCQYCGKRFHQKSDMKKH-TYIHTGEKPHKCVVC--------GKAFSQSSNLITHLRKHT 78
P + C + F ++ H T H G VC GK+F L+ H+R HT
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 79 GYKPFSCGL--CDKAFQRKVDLRRHR 102
G KPF C C K F R +L+ H+
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHK 112
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 37/73 (50%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
CK CG+ F + D RPY C C K F ++ ++ H YIH+ EKP KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 61 GKAFSQSSNLITH 73
GK F QS L H
Sbjct: 80 GKGFCQSRTLAVH 92
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
+ + C++CG+ F + ++ H HT E+P+ C +C KAF + +L H H+ KPF
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 85 CGLCDKAFQRKVDLRRHR 102
C C K F + L H+
Sbjct: 76 CQECGKGFCQSRTLAVHK 93
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
KP +C +C + FS+S +L TH+R HTG KPF+C +C + F R + +RHR+ QH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSS 68
+P+ C+ C + F + + H HTGEKP C +CG+ F++S
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSD 45
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYI 48
C+ C + F R +P+ C CG++F + + K+H I
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 29 CQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY--KPFSCG 86
C+ CGK F + +H H+GEKP+ C VCG F + + H+R H G KP+ C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 87 LCDKAFQRKVDLRRHRESQHPG 108
C K F R L H + H G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTYIHTGE--KPHKCV 58
C+ CGK F+ +PY C CG RF +K M H H G KP+ C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 59 VCGKAFSQSSNLITHLRK-HTG 79
CGK FS+ +L H+++ H+G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGS 109
+G C +CGK F +L H H+G KP+SC +C F+RK + H S H GS
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGS 61
Query: 110 PAQ 112
+
Sbjct: 62 VGK 64
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 25 RPY--PCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHT 78
RPY P + C +RF + ++ +H IHTG+KP +C +C + FS+S +L TH+R HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 46 TYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
Y+ +P+ C V C + FS+S L H+R HTG KPF C +C + F R L H
Sbjct: 11 NYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 45/88 (51%), Gaps = 13/88 (14%)
Query: 23 DTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGY 80
+ RP+ QY + H HTGEKPHKC C K++S+ NL THLR HTG
Sbjct: 45 ELRPFKAQYM---------LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE 95
Query: 81 KPFSC--GLCDKAFQRKVDLRRHRESQH 106
KP+ C C KAF D +H+ H
Sbjct: 96 KPYMCEHEGCSKAFSNASDRAKHQNRTH 123
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 57 CVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQ 112
C VC +AF++ +L H R HT KP+ CGLC++AF R+ L RH + H G+ +
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRK-HTG 79
+ C+ C + F ++ +K+H HT EKP+ C +C +AF++ LI H +K H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTY-IHTGE 52
C+ C + F R + +PYPC C + F ++ + +H IH+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHTY---IHTGEKPHKC 57
C C K F +P+ C CGK + +K ++ +H ++ E+ C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 58 VVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG 108
VC + F + L H+ HTG P+ C C + F +K DL+ H H G
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+G +C C K F L H RKHTG KPF C C K + RK +L H
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%)
Query: 51 GEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
G +C CGK F + L HLR HTG KP+ C C+ A +K LR H E H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 29 CQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKH 77
C YCGK F + H HTGEKP+KC C A +Q ++L HL +H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKH 45
C CGK F+ +PY C++C QK+ ++ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKH 77
RP+ C +CGK + S + +H H G +P C CGK F S + HL+ H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
E+P C CGK + +S L H R H GY+P SC C K F+ + ++ RH
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 60 CGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRHRES 104
CGK + +SS+L H R HTG KPFSC C++ F R +L RHR +
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 32 CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKH 77
CGK + + S +K HT HTGEKP C C + F++S L H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 49 HTGEKPHKCVVCGKAFSQSSNLITH-LRKHT-GYKPFSCGLCDKAFQRKVDLRRHRESQH 106
H+GEKP++C +C F+QS + H L+KHT F C CD RK DL H QH
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHK--CVVCGKAFSQSSNLITHLRKHTGYKP 82
+PY C C RF Q MK H E K C C ++ S+L HLRK Y
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73
Query: 83 FSCG 86
S G
Sbjct: 74 PSSG 77
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 75 RKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQH 114
R H+G KP+ C +C F + ++ H +H + A+ H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFH 47
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 26/29 (89%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
KP +CV+CGKAF+Q+S+LI H+R+HTG K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+P C CGK F Q S + H HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
EKP++C CGKAFSQ +LI H+R HTG P S
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F QK + H +HTG P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC--VVCGKAFSQSSNLITHLRKHTGY 80
+ Y C + CG +++ ++ H HTGEKP C C K F+ +L H HTG
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 81 KPFSCGL--CDKAFQRKVDLRRHRESQH 106
K F+C CD F K ++++H H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFH 89
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP++C CGKAF+ SNL TH + HTG KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F +S++ H IHTGEKP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+KC CGKAFSQ+S L H R HTG KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F Q S + +H IHTGEKP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP++C CGKAFSQ+++LI H R HTG KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C+ CGK F Q + + +H +HTGEKP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
E+PHKC CGK+F QS++LI H R HTG KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
RP+ C CGK F Q + + +H IHTGEKP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
E+P+ C VCGKAF+ SNLI H + HTG KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
RPY C CGK F +S++ KH IHTGEKP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 27 YPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKP 82
Y C + CG +++ ++ H HTGEKP C C K F+ +L H HTG K
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 83 FSCGL--CDKAFQRKVDLRRHRESQH 106
F+C CD F K ++++H H
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFH 98
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 27 YPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC--VVCGKAFSQSSNLITHLRKHTGY-- 80
Y C + CGK F + + +K H + HT + P++C C K FS S L H + H GY
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 164
Query: 81 -KPFSCGLCDKAF 92
K SC K +
Sbjct: 165 KKDDSCSFVGKTW 177
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 2 KQCGKTFKRXXXXXXXXXXXXDTRPYPC--QYCGKRFHQKSDMKKHTYIHTG---EKPHK 56
+ CGK FK+ PY C + C KRF S +K+H +H G +K
Sbjct: 110 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 169
Query: 57 CVVCGKAFS 65
C GK ++
Sbjct: 170 CSFVGKTWT 178
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP++C CGKAF+Q +NL H R HTG KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F QK+++ +H IHTGEKP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHR 102
KP+ CG C KAF +K +L +H+
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQ 32
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+KC CGK F+Q+S+L H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F Q S + H IHTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Protein In Complex With Methylated Cpg Site Dna
Length = 133
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLR 75
+ YPC+YC K F KH HTGE+ ++C+ CGK+F + +H++
Sbjct: 49 KKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIK 99
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%)
Query: 27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
Y C C + + + +++H IH+ EK + C C K F + H HTG + + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 87 LCDKAFQRKVDLRRHRESQHPGSPA 111
C K+F + H +S H P+
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQDPS 107
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+ C CGKAFS S LI H+R H+G KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F KS + H H+GEKP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 24/31 (77%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EK +KC VCGK FSQSS+L TH R HTG KP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 27 YPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
Y C CGK F Q S ++ H +HTGEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP +C CGK+FS SS L TH R HTG KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+P+ C CGK F S + H IHTGEKP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP KC CGKAF Q+ +L +HLR HTG KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+P+ C+ CGK F Q + H IHTGEKP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+KC CGK F+Q+S+L H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F Q S + H IHTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
+GEKP++C CGK+FSQ +L H R HTG P S
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C+ CGK F Q+ + H +HTG P
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
+G KP+ C CGKAF S LI H+R HTG KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 23 DTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F KS + H HTGEKP
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 78 TGYKPFSCGLCDKAFQRKVDLRRH 101
+G KP+ C C KAF+ K L H
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIH 29
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKPH+C CGK+FS +S LI H R HTG P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+P+ C+ CGK F S + H IHTGE P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
+GEKP++C CGKAF S LI H R HTG S G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESGPSSG 42
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
+PY C CGK F KS + H HTGE
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F QKS + +H IHTGEKP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+ C CGK+F Q S+L H R HTG KP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHR 102
KP+ C C K+F +K L RHR
Sbjct: 11 KPYICNECGKSFIQKSHLNRHR 32
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
KP++C CGKAFSQ+S L H R HTG KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F Q S + +H +HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C YCGK F +++ +H IHTGEKP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+ C CGKAF S+ L+ H R HTG KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHR 102
KP+ C C KAF +L RH+
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQ 32
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+KC CGK F+Q+S+L H R HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F Q S + +H +HTG KP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHRESQHPGSPA 111
KP+ C C K F + L RHR G P+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPS 41
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
++P++C+ CGKAF S+LI H R HTG KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
RPY C CGK F KS + H HTGEKP
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP +C C KAF+ SNLI H R HTG KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+P+ C C K F+ KS++ H HTGEKP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHR 102
KPF C C KAF K +L H+
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQ 32
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+P+ C+ CGKRF Q S + H +HTGEKP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP KC CGK F+Q+S L +H R HTG KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+KC CGKAF SNL TH HTG KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F S++ H IHTGEKP
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
+GEKP+ C CGKAF+ S LI H HTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F KS + H +HTG KP
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 78 TGYKPFSCGLCDKAFQRKVDLRRHR 102
+G KP+SC C KAF K L H+
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHK 30
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+KC CGKAF + ++L H R HTGY+P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK FH+ + + +H IHTG +P
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHR 102
KP+ C C KAF R L HR
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHR 32
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
E+ H+C CGK F Q+SN I H R HTG KP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
R + C CGK F Q S+ +H IHTGEKP
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+KC CGK F+Q+S+L+ H HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F Q S + +H IHTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP++C VCGKAFS +L H R H+G KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F + + H IH+G+KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+P+ C+ CGKRF Q S + H +HTGEKP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP +C CGK F+Q+S+L +H R HTG KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+KC VCGKAF SS+L+ H H+G +P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY CQ CGK F S + +H +H+GE+P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTG 79
+GEKP+ C CGKAF + S+ ITH R HTG
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 32.7 bits (73), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
+PY C CGK F +KS H IHTGE
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+KC+ CGKAF +S+ H R HTG +P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F S +H +HTG++P
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLR 75
Y C+ CG R + S +KKH HT +P+ C C +F NL H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 57 CVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQ 105
C CG + S L H+R HT +P+ C C+ +F+ K +L +H +S+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKH 45
C++CG K+ D RPY C YC F K ++ KH
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F Q S + +H IHTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+KC CGK F+Q+S+L H HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP++C VC KAF+Q ++L H + HTG KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C+ C K F QK+ + +H HTGEKP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHRES 104
KP+ C +C KAF +K L +H+++
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKT 34
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTG 79
+GEKP+ C CGKAF+QSS L H R HTG
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
+PY CQ CGK F Q S + H +HTGE
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F Q S + +H IHTGEKP
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
+KP+KC CGK F+Q+S+L H HTG KP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+ C CGK FSQ S L H R HTG KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F QKS + H HTGEKP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP KCV CGK FS+ S L H + HTG KP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+P+ C CGK F ++S + H +HTGEKP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP++C CGKAFS S+L TH HTG KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F +S + H IHTG+KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
+GEKP+ C CGK FS S LI H R HTG K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+PY C CGK F KS + H IHTGEK
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F +KS + H IHTGEKP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP++C +CGK+F++ S L H + HTG KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHRE 103
KP+ C +C K+F +K L H++
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQ 33
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKH--TGYKP--FSCGLCDKAFQRKVDLRRHRE 103
HTGEKP+ C C K F Q L H +++ + P F C C K F R+ + RH +
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 104 S 104
+
Sbjct: 69 N 69
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 75 RKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
R HTG KP++C CDK F++K L H + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 25 RPYPCQYCGKRFHQKS--DMKKHTYIHTGEKPHK--CVVCGKAFSQSSNLITHLRKHTG 79
+PY C +C K F QK DM Y P C CGK F++ + + H G
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAG 72
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 21/32 (65%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
T EKP+KC CGKAF SNL TH HTG K
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+PY C CGK F +S++ H IHTGEK
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLR-KHTGYKP 82
+KP++C+ CGKAF Q+++LI H R HTG KP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHT-YIHTGEKP 54
+PY C CGK F Q + + +H Y HTGEKP
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHRESQHPG 108
KP+ C C KAF + L RH H G
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTG 38
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 23/37 (62%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
+GEK H+C CGKAFS S LI H R HTG S G
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGESGPSSG 42
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
+ + C CGK F KS + H IHTGE
Sbjct: 9 KLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PYPC+ CG RF +K H IHTG P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 34.3 bits (77), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
EKP+ C +CG F L +HLR HTG P S
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C+ CGK F S +++H IHTGEKP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 19/31 (61%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+ C CGKAF S L H R HTG KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F + S + +H IHTGEKP
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+KC CGK F ++S+L H HTG KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
+GE P++C CGKAF++ LI+H R H G S G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
PY C CGK F++K + H H GE
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 78 TGYKPFSCGLCDKAFQRKVDLRRHR 102
+G P+ C C KAF RK L H+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQ 30
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
E P++C CGKAFS+ LI+H R H G KP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
PY C CGK F +K + H H GEKP
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
EKP++C CGKAF ++S LI H R H+G S G
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGESGPSSG 44
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
+PY C CGK F + S + H H+GE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+ C CGKAF+ SNLI H + HT KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F +S++ KH IHT +KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C+ CG RF Q + ++ H IHTG P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
EKP+KC CG F Q ++L H+ HTG P S
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+P+ C C K F Q+S + H IHTGEKP
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
T EKP +C C K+F Q S L +H HTG KP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 78 TGYKPFSCGLCDKAFQRKVDLRRHR 102
T KPF C CDK+F+++ L HR
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHR 32
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 24 TRPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F S + H IHTGEKP
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
KP+ C CGKAFS S+L TH HTG KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 19/31 (61%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP C+ CGKAFS L H R HTG KP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+P+ C CGK F + +H IHTGEKP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHR 102
KPF C C KAF + L +HR
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHR 32
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
R Y CQ CGK F QK + H IHTG P
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
+G++ ++C CGK+F Q +L H R HTG P S
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+KC VC K+F S+L H R HTG KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C C K F S + H IHTGEKP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
E+ ++C CGKAF++ S LI H R HTG KP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
R Y C CGK F +KS + H IHTGEKP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+P C CGK F Q S + KH IH+GEKP
Sbjct: 9 KPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
+G+KP C CGK F QSS L H R H+G KP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F S + +H IHTGEKP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+KC CGK F +S L H R HTG KP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTG 79
+G+KP+ C CGKAF S LI H R HTG
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
+PY C CGK F KS + H IHTGE
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHT 78
EKP+ C VCGKAF S++L HLR HT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
+PY C CGK F + + +H +HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 81 KPFSCGLCDKAFQRKVDLRRH 101
KP+SC +C KAF L +H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQH 31
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
EKP++C C KAF+ SNL+ H R HTG S G
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
+PY C C K F+ KS++ H HTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHR 102
KP+ C C KAF K +L H+
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQ 32
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+KC CGKAF S+L H H+G KP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F +S + H H+GEKP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP++C VC KAFS ++L H R H+G KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C C K F + + +H +H+GEKP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
KP+ C C K FS S LI H R HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 24 TRPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C C K F KS + H HTG KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
+KP +C CGK+F NL+TH R HTG K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+P+ C +CGK F K ++ H IHTGEK
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP KC CGK+++Q +L H R HTG KP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+P+ C CGK ++Q+ + +H +HTGEKP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHR 102
KPF CG C K++ ++V L +H+
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQ 32
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F +KS + H IHTGE P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP++C CGK+F + S L H R HTG P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
+GEKP+ C CGKAF+ S LI H HTG S G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVSGPSSG 42
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTG 51
+PY C CGK F KS + H IHTG
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 27 YPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC--VVCGKAFSQSSNLITHLRKHTGY-- 80
Y C + CGK F + + +K H + HT + P++C C K FS S L H + H GY
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 81 -KPFSCGLCDKAF 92
K SC K +
Sbjct: 62 KKDDSCSFVGKTW 74
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 2 KQCGKTFKRXXXXXXXXXXXXDTRPYPCQY--CGKRFHQKSDMKKHTYIHTG---EKPHK 56
+ CGK FK+ PY C + C KRF S +K+H +H G +K
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 57 CVVCGKAFS 65
C GK ++
Sbjct: 67 CSFVGKTWT 75
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHT-YIHTGEKPHKCVV 59
+PY CQ CGK F + + H +HT E+PHKC V
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRK-HTGYKPFSC 85
KP+ C CGK FS+ +L H+++ HT +P C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C+ CGK F S + KH +H+GEKP
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+ C CGK+F +S L+ H R H+G KP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+P+ C CGK F +S + +H+ +HT EKP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 32.7 bits (73), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP KC +CGK+F S L H HT KP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
The Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 27 YPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC--VVCGKAFSQSSNLITHLRKHTGY-- 80
Y C + CGK F + + +K H + HT + P++C C K FS S L H + H GY
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 81 -KPFSCGLCDKAF 92
K SC K +
Sbjct: 62 KKDDSCSFVGKTW 74
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 2 KQCGKTFKRXXXXXXXXXXXXDTRPYPCQY--CGKRFHQKSDMKKHTYIHTG---EKPHK 56
+ CGK FK+ PY C + C KRF S +K+H +H G +K
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 57 CVVCGKAFS 65
C GK ++
Sbjct: 67 CSFVGKTWT 75
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
R Y C CGK F QKS + H IH GEKP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 32.7 bits (73), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
E+ ++C CGKAF Q S L H R H G KP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 27 YPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
Y C CGK F + S + +H IHTGEKP
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EK +KC CGK FS++S L H + HTG KP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
E P C CGK F+ +NLI H + HTG +P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
P+ C CGK F K+++ H IHTGE+P
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C+ CGK F + D+ H +HTGEKP
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+KC CGK F +L TH HTG KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C+ CGK ++ K ++ H +HTGE+P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP+KC CGK ++ NL H + HTG +P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTG 51
RPY C CGKRF K M+ H +HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTG 79
+P+ C VCGK FS + TH R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTG 79
EKP+KC CGKAF++ S L H + HTG
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+PY C CGK F +KS + H HTGE+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHRES 104
KP+ C C KAF RK L H++S
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQS 34
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP KC CGK F +S +H R H+G KP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+P+ C+ CGK F+ S H H+GEKP
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
EKP+KCV CGK + + +L H R HTG K
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 32.7 bits (73), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+PY C CGK + ++ D+ H +HTGEK
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
+GEK H+C C K FS S L+ H R HTG P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTG 79
KP+ C CGKAF S LI H R HTG
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
+PY C CGK F KS + HT HTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 27 YPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+ C CGK F +KS + H IHTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 56 KCVVCGKAFSQSSNLITHLRKHTGYKP 82
+C CGKAF++ S L H + HTG KP
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 26 PYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
P+ C CGK F + + KH IH GE P
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
T E P KC CGK FS S++L H H G P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 25 RPYPC--QYCGKRFHQKSDMKKHTYIHTGEK 53
RP+ C YCGKRF + ++++H HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 53 KPHKCVV--CGKAFSQSSNLITHLRKHTGYK 81
+P C CGK F++S L H R HTG K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 26 PYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
P C+ CGK+F ++K+H IH+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 54 PHKCVVCGKAFSQSSNLITHLRKHTGYK 81
P KC CGK F+ S NL HLR H+G K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 17/30 (56%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
EKP KC CGKAF S LI H R H K
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 24 TRPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
T+ + C CG+ F KS + +H IHTGEKP
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
K H+C CG+ F+ S+L H R HTG KP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.033, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
EKP++C CGKAF S LI H R H G S G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG 44
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTG 51
+PY C CGK F KS + H H G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
EKP+KC CGK +++ NL H R H G K
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+PY C+ CGK ++++ ++ H +H GEK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
+K KC C K F+QSS+L H R HTG KP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 27 YPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+ C C K F Q S + H IHTGEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHT 78
E+P KC CGK F + S+L HLR H+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
RP+ C CGK F ++S + H +H+ EK
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTG 79
E P++C CGK FS+ L++H + H+G
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSG 37
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
PY C CGK F +K + H H+G+
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
+GEKP C C KAFS S L+ H + H KP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 78 TGYKPFSCGLCDKAFQRKVDLRRHRES 104
+G KPF C C+KAF K L H+++
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQT 32
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+P+ C C K F KS + H H EKP
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKH---TGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
+G +C +CG Q ++L H RKH F C C K F++ + HR H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 107 P 107
P
Sbjct: 63 P 63
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 27 YPCQYCGKRFHQKSDMKKH 45
+PC++CGKRF + + H
Sbjct: 39 FPCEFCGKRFEKPDSVAAH 57
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTG 79
EKP+KC CGK+F+ S L H + HTG
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+PY C CGK F KS ++ H HTGE+
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.7 bits (73), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
KP+KC C A + +NL HLRKHTG K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKH 77
E+P+ C CGK F + S+LI HL++H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
RPY C CGK F + S + +H H EK
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREK 39
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EK + C CGK+FS++ L+ H R H+G KP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 27 YPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
Y C+ CGK F + + KH +H+GEKP
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 32.3 bits (72), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 55 HKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHP 107
H C VCG++F+ HLR + F C C F L RH HP
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHP 81
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 1 CKQCGKTFKRXXXXXXXXXXXXDTRPYPCQYCGKRFHQKSDMKKHT 46
C CG++F + +PC+YC F+ + +H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 29 CQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRK 76
C CG+ F K ++H + + C C F S L H+ K
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 45
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTG 79
+GEKP+ C VCG F + + H+R H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
+PY C CG RF +K M H H G
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
KP +C C + FS+S +L TH R HTG K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+P+ C+ C ++F + +K HT HTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EKP +C CG FS S +L HLR H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 24 TRPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+PY C +C ++F +++H IHTGEK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
KP+ C+ C + F+ L H+R HTG K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHT 78
+GEKP+ C C + FS ++ L+ H + HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
KP++C CGK+FS S L H HT KP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+PY C CGK F + +H HT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKH 77
KP+ C CGK F QSS L H+R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHT 46
+PY C+ CGKRF Q S + H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHI 22
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 52 EKPHKCVV--CGKAFSQSSNLITHLRKHTGYKP 82
EKP C CG FS+S L H R H+G KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHTGEKP 54
+P+ C + CG RF + ++ +H H+G KP
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 51 GEKPHKCVVCGKAFSQSSNLITH-LRKHT-GYKPFSCGLCDKAFQRKVDLRRHRESQH 106
GE ++C VC + ++ SN H + H K + C C K F RK ++ H + H
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 23 DTRPYPCQYCGKRFHQKSDMKKHTYI 48
+ + YPC +C K F +K +M H I
Sbjct: 37 NVKVYPCPFCFKEFTRKDNMTAHVKI 62
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 75 RKHTGYKPFSCGLCDKAFQRKVDLRRHRE 103
R TG KPF C CD++F R L HR+
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKH 77
TG KP +C C ++FS+S +L H ++H
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger Domain:
Insights Into Adr1-Uas1 Protein-Dna Recognition
Length = 30
Score = 29.6 bits (65), Expect = 0.49, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 83 FSCGLCDKAFQRKVDLRRHRESQHPGS 109
++CGLC++AF R+ L RH + H G+
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSGN 29
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+PY C+ C K F Q + +H +HTGE+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTG 79
+KP++C C K F Q +L H R HTG
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTG 37
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+ + C+YC K F K ++ H IHT EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
Sequence Taken From The Third Zinc Finger Domain Of The
Human Transcriptional Repressor Protein Yy1 (Ying And
Yang 1, A Delta Transcription Factor), Nmr, 34
Structures
Length = 28
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 26 PYPCQY--CGKRFHQKSDMKKHTYIHTG 51
P+ C + CGKRF ++K H IHTG
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 54 PHKCVV--CGKAFSQSSNLITHLRKHTG 79
P +C CGK FS NL TH++ HTG
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 54 PHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
P+KC C K+FS L+ H R HT KP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 24 TRPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
PY C C K F K + H +HT EKP
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
EK KC C FSQ+S+L H H G KP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
+ + C+ C F Q S ++ H +H GEKP
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 39 KSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG 79
K+ ++ H IH ++P KC C Q SNL H++K G
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
+ + C CGK+F K +K H +HT +
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>pdb|1ZR9|A Chain A, Solution Structure Of A Human C2h2-Type Zinc Finger
Protein
Length = 124
Score = 28.9 bits (63), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 55 HKCVVCGKAFSQSSNLITHLR 75
H+C+ C + F S+NL TH R
Sbjct: 51 HRCLACARYFIDSTNLKTHFR 71
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 25 RPYPCQYCGKRFHQKSDMKKH 45
+ Y CQYC KRF S++K H
Sbjct: 1 KTYQCQYCEKRFADSSNLKTH 21
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLR 75
K ++C C K F+ SSNL TH++
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIK 23
>pdb|2YSO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
656- 688) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
EK H+C CG+ F Q +LI H H G K
Sbjct: 10 EKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 29 CQYCGKRFHQKSDMKKHTYIHTGEKPH 55
C+ CGK F + +H H+GEKP+
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 57 CVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
C +CGK F +L H H+G KP+S G
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYSSG 44
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 78 TGYKPFSCGLCDKAFQRKVDLRRHRE 103
TG KPF C CD +F R L HR+
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRK 28
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKH 77
TG KP +C C +FS+S +L H ++H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 1)
Length = 37
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 52 EKPHKCVV--CGKAFSQSSNLITHLRKHTG 79
+K H C + CGK + ++S+L HLR HTG
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTG 35
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHT 78
+G++P C +C AF+ +N HL+ HT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHT 50
RP+ C+ C F K++ +H +HT
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHT 31
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 78 TGYKPFSCGLCDKAFQRKVDLRRH 101
+G +PF C +C AF K + RH
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARH 26
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKH 77
KP++C CG++FS ++ + HL H
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETH 26
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+PY C YCG+ F + +H H +K
Sbjct: 2 KPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHT 78
E P KC C + F+Q + L+ H R H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 81 KPFSCG--LCDKAFQRKVDLRRHRES 104
+P+SC CDKAF R DL RH++S
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKS 27
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
EK H C CGK F S L H R H G K
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+ + C CGK F S ++ H +H GEK
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
Finger Protein 32
Length = 42
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
E P+ C CGK+F+Q +L H R + P S
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 28 PCQY--CGKRFHQKSDMKKHT-YIHTGEKPHKCV--VCGKAFSQSSNLITHLRKHTGYKP 82
PC + CG+ F + + H Y H +K C CGK+F+ +L H++ H+ +
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Query: 83 FSC 85
+ C
Sbjct: 69 YIC 71
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 29 CQYCGKRFHQKSDMKKHTYIHTGE 52
CQ CGK F S + +H +H GE
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAGE 38
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 81 KPFSCGLCDKAFQRKVDLRRH 101
KPF C LC+ A + K +L+ H
Sbjct: 8 KPFKCSLCEYATRSKSNLKAH 28
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHT 78
KP KC +C A SNL H+ +H+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHS 33
>pdb|1VFN|A Chain A, Purine Nucleoside Phosphorylase
Length = 281
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 33 GKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITH 73
G + D K HT ++P V+CG N +T
Sbjct: 1 GYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQ 41
>pdb|1A9T|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With
9-Deazainosine And Phosphate
Length = 284
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 33 GKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITH 73
G + D K HT ++P V+CG N +T
Sbjct: 4 GYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQ 44
>pdb|1B8N|A Chain A, Purine Nucleoside Phosphorylase
pdb|1B8O|A Chain A, Purine Nucleoside Phosphorylase
pdb|3FUC|A Chain A, Recombinant Calf Purine Nucleoside Phosphorylase In A
Binary Complex With Multisubstrate Analogue Inhibitor
9-(5',5'- Difluoro-5'-Phosphonopentyl)-9-Deazaguanine
Structure In A New Space Group With One Full Trimer In
The Asymmetric Unit
pdb|3FUC|B Chain B, Recombinant Calf Purine Nucleoside Phosphorylase In A
Binary Complex With Multisubstrate Analogue Inhibitor
9-(5',5'- Difluoro-5'-Phosphonopentyl)-9-Deazaguanine
Structure In A New Space Group With One Full Trimer In
The Asymmetric Unit
pdb|3FUC|C Chain C, Recombinant Calf Purine Nucleoside Phosphorylase In A
Binary Complex With Multisubstrate Analogue Inhibitor
9-(5',5'- Difluoro-5'-Phosphonopentyl)-9-Deazaguanine
Structure In A New Space Group With One Full Trimer In
The Asymmetric Unit
Length = 284
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 33 GKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITH 73
G + D K HT ++P V+CG N +T
Sbjct: 4 GYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQ 44
>pdb|2QPL|A Chain A, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase Complexed To A Novel Purine Analogue
Length = 282
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 33 GKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITH 73
G + D K HT ++P V+CG N +T
Sbjct: 2 GYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQ 42
>pdb|1LV8|A Chain A, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LV8|B Chain B, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LV8|C Chain C, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LV8|D Chain D, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LV8|E Chain E, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LV8|F Chain F, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|A Chain A, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|B Chain B, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|C Chain C, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|D Chain D, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|E Chain E, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
pdb|1LVU|F Chain F, Crystal Structure Of Calf Spleen Purine Nucleoside
Phosphorylase In A New Space Group With Full Trimer In
The Asymmetric Unit
Length = 289
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 33 GKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITH 73
G + D K HT ++P V+CG N +T
Sbjct: 4 GYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQ 44
>pdb|1A9Q|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With
Inosine
pdb|1A9R|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With
Hypoxanthine And Sulfate
Length = 282
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 33 GKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITH 73
G + D K HT ++P V+CG N +T
Sbjct: 4 GYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQ 44
>pdb|1V48|A Chain A, Calf Spleen Purine Nucleoside Phosphorylase (Pnp) Binary
Complex With 9-(5,5-Difluoro-5-Phosphonopenthyl)guanine
pdb|2AI1|A Chain A, Purine Nucleoside Phosphorylase From Calf Spleen
pdb|2AI2|A Chain A, Purine Nucleoside Phosphorylase From Calf Spleen
pdb|2AI3|A Chain A, Purine Nucleoside Phosphorylase From Calf Spleen
Length = 289
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 33 GKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITH 73
G + D K HT ++P V+CG N +T
Sbjct: 4 GYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQ 44
>pdb|1FXU|A Chain A, Purine Nucleoside Phosphorylase From Calf Spleen In
Complex With N(7)- Acycloguanosine Inhibitor And A
Phosphate Ion
Length = 289
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 33 GKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITH 73
G + D K HT ++P V+CG N +T
Sbjct: 4 GYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQ 44
>pdb|1A9O|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With
Phosphate
pdb|1A9P|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With
9-deazainosine And Phosphate
pdb|1A9S|A Chain A, Bovine Purine Nucleoside Phosphorylase Complexed With
Inosine And Sulfate
Length = 289
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 33 GKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITH 73
G + D K HT ++P V+CG N +T
Sbjct: 4 GYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQ 44
>pdb|1PBN|A Chain A, Purine Nucleoside Phosphorylase
pdb|3PNP|A Chain A, The High Resolution Crystal Structure Of Bovine Spleen
Purine Nucleoside Phosphorylase In Complex Forms With
Phosphate And 9- Deazainosine
pdb|4PNP|A Chain A, The High Resolution Crystal Structure Of Bovine Spleen
Purine Nucleoside Phosphorylase In Complex Forms With
Phosphate And 9- Deazainosine
Length = 289
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 33 GKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITH 73
G + D K HT ++P V+CG N +T
Sbjct: 4 GYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQ 44
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 88 CDKAFQRKVDLRRHRESQHPGSPAQQHHI 116
CD+ F +L H +H G P Q +H+
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
>pdb|2EPP|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 278
Length = 66
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 83 FSCGLCDKAFQRKVDLRRHRESQH 106
CGLC K F LR+H E+QH
Sbjct: 14 LPCGLCGKVFTDANRLRQH-EAQH 36
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 25 RPYPCQYCGKRFHQKSDMKKH 45
RPY C YC F K ++ KH
Sbjct: 1 RPYHCSYCNFSFKTKGNLTKH 21
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,793,100
Number of Sequences: 62578
Number of extensions: 125922
Number of successful extensions: 940
Number of sequences better than 100.0: 219
Number of HSP's better than 100.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 597
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)