RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2643
(134 letters)
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 129 bits (326), Expect = 2e-40
Identities = 74/79 (93%), Positives = 76/79 (96%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
CK CGK+FKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT+IHTGEKPHKC VC
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 61 GKAFSQSSNLITHLRKHTG 79
GKAFSQSSNLITH RKHTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 60.9 bits (149), Expect = 9e-14
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 56 KCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
C +CGK+F +SS L THL H+ +P+ C C K F +K D+++H
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT 49
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 124 bits (314), Expect = 4e-38
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH---TYIHTGEKPHKC 57
C C K F L H H+ +P+ C CGK + +K ++ +H ++ E+ C
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 58 VVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG 108
VC + F + L H+ HTG P+ C C + F +K DL+ H H G
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 96.8 bits (242), Expect = 3e-27
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRK---H 77
S + C C K+F K +K H HTGEKP +C CGK + + NL+ H + +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 78 TGYKPFSCGLCDKAFQRKVDLRRH 101
+ F+C +C + F+R+++LR H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLH 85
Score = 62.9 bits (154), Expect = 4e-14
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTY-IHTGEK 53
C C +TF+R L H++ H+ PY C C ++F QK D++ H +H+G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 126 bits (319), Expect = 5e-38
Identities = 50/101 (49%), Positives = 64/101 (63%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
C +CGK+F RS L+ H H+ +PY C CGK F K D+ +H HTGEKP+KC C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
GK+FSQ +NL H R HTG KP++C C K+F + LR H
Sbjct: 84 GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 126 bits (318), Expect = 5e-38
Identities = 45/102 (44%), Positives = 64/102 (62%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
C +CGK+F L+ H H+ +PY C CGK F Q+++++ H HTGEKP+ C C
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Query: 61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
GK+FSQ ++L H R HTG KP+ C C K+F R+ +L H+
Sbjct: 112 GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ 153
Score = 126 bits (318), Expect = 6e-38
Identities = 47/101 (46%), Positives = 62/101 (61%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
C +CGK+F + + L H H+ +PY C CGK F Q + ++ H HTGEKP+KC C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
GK+FS+ NL TH R HTG KP+ C C K+F R+ L H
Sbjct: 140 GKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 111 bits (280), Expect = 3e-32
Identities = 38/96 (39%), Positives = 54/96 (56%)
Query: 7 TFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQ 66
+ SS+ + +PY C CGK F + + +H HTGEKP+KC CGK+FS
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 67 SSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+L H R HTG KP+ C C K+F ++ +LR H+
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ 97
Score = 107 bits (269), Expect = 2e-30
Identities = 36/82 (43%), Positives = 49/82 (59%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
C +CGK+F + + L H H+ +PY C CGK F ++ ++ H HTGEKP+KC C
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Query: 61 GKAFSQSSNLITHLRKHTGYKP 82
GK+FS+ L H R HTG K
Sbjct: 168 GKSFSRRDALNVHQRTHTGKKT 189
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 117 bits (296), Expect = 9e-36
Identities = 36/86 (41%), Positives = 45/86 (52%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
C+ CGK F R L TH+ H+ +PY C+ C S + KH IH+ E+P KC +C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 61 GKAFSQSSNLITHLRKHTGYKPFSCG 86
A SS L HLR HTG S G
Sbjct: 71 PYASRNSSQLTVHLRSHTGDSGPSSG 96
Score = 105 bits (265), Expect = 5e-31
Identities = 32/82 (39%), Positives = 44/82 (53%)
Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY 80
+ P+ C+ CGK F +K +K H HTG KP+KC C A + SS+L HLR H+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 81 KPFSCGLCDKAFQRKVDLRRHR 102
+PF C +C A + L H
Sbjct: 63 RPFKCQICPYASRNSSQLTVHL 84
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 115 bits (291), Expect = 8e-35
Identities = 35/85 (41%), Positives = 44/85 (51%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
CK CG+ F +S L H H+D RPY C C K F ++ ++ H YIH+ EKP KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 61 GKAFSQSSNLITHLRKHTGYKPFSC 85
GK F QS L H H +
Sbjct: 80 GKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 108 bits (273), Expect = 3e-32
Identities = 30/92 (32%), Positives = 46/92 (50%)
Query: 11 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNL 70
SS S L + + C++CG+ F + ++ H HT E+P+ C +C KAF + +L
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 71 ITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
H H+ KPF C C K F + L H+
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK 93
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 114 bits (289), Expect = 3e-34
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV- 59
K C K F+ +S + HL H R + C CGK F + S +K+H +HTGEKP +C
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFE 68
Query: 60 -CGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRH 101
CGK FS NL TH+R HTG +P+ C C+K F + +L+ H
Sbjct: 69 GCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 106 bits (266), Expect = 6e-31
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCV 58
C +CGK F SS L H L+H+ +P+ C + CGKRF +++ H IHTG++P+ C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 59 V--CGKAFSQSSNLITHLRKHTGYKPF 83
C K F+QS+NL +H+ H K
Sbjct: 97 FDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 89.5 bits (223), Expect = 2e-24
Identities = 35/81 (43%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
R C + C K F S M+KH + H G + H C CGKAF +SS L H HTG KP
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 83 FSCGL--CDKAFQRKVDLRRH 101
F C C K F +LR H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTH 83
Score = 64.8 bits (159), Expect = 8e-15
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 2 KQCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHK 56
+ CGK F L TH+ IH+ RPY C + C K+F Q +++K H H K ++
Sbjct: 68 EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 57.5 bits (140), Expect = 7e-12
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 52 EKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ C C K F +S + HL H G + C C KAF L+RH
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH 53
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 113 bits (285), Expect = 9e-34
Identities = 44/107 (41%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 1 CKQ--CGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHK 56
C C K + + S L H H+ +PY C + C +RF + +K+H HTG KP +
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ 68
Query: 57 CVVCGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRH 101
C C + FS+S +L TH R HTG KPFSC C K F R +L RH
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 94.1 bits (235), Expect = 3e-26
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGY 80
RP+ C Y C KR+ + S ++ H+ HTGEKP++C C + FS+S L H R+HTG
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 81 KPFSCGLCDKAFQRKVDLRRHR 102
KPF C C + F R L+ H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHT 86
Score = 92.6 bits (231), Expect = 1e-25
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC--V 58
K C + F RS L H H+ +P+ C+ C ++F + +K HT HTGEKP C
Sbjct: 41 FKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWP 100
Query: 59 VCGKAFSQSSNLITHLRKH 77
C K F++S L+ H H
Sbjct: 101 SCQKKFARSDELVRHHNMH 119
Score = 67.2 bits (165), Expect = 1e-15
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 50 TGEKPHKC--VVCGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRH 101
+ ++P C C K + + S+L H RKHTG KP+ C C++ F R L+RH
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 110 bits (278), Expect = 8e-33
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 3 QCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGK 62
QCGK+F S H+ +H RPY C CGK+F K + H IHTG KP++C +C K
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 63 AFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLR 99
F + H + K + ++
Sbjct: 74 RFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 99.4 bits (249), Expect = 2e-28
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 20 IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG 79
S + YPCQ CGK F KS +H +H G +P+ C VCGK F +L+ H++ HTG
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
Query: 80 YKPFSCGLCDKAFQRKVDLRRH 101
KP+ C +C K F + RH
Sbjct: 63 IKPYECNICAKRFMWRDSFHRH 84
Score = 90.2 bits (225), Expect = 7e-25
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
C CGK FK L H+ IH+ +PY C C KRF + H ++ + K ++
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKA 97
Query: 61 GKAFSQSSNLIT 72
+ +++S +
Sbjct: 98 EQNTTEASGPSS 109
Score = 29.3 bits (67), Expect = 0.18
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 75 RKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+G K + C C K+F K RH
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHM 29
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 109 bits (274), Expect = 1e-31
Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 1 CKQCGKTFKRSSTLSTHLL---IHSDTRPYPCQYCG-----KRFHQKSDMKKHTYIHTGE 52
C + F L H+ IH + + + C + G + F + + H HTGE
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 53 KPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSC--GLCDKAFQRKVDLRRHRESQHPG 108
KPHKC C K++S+ NL THLR HTG KP+ C C KAF D +H+ H
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Score = 99.6 bits (249), Expect = 5e-28
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC- 57
C + + FK L H+ H+ +P+ C + C K + + ++K H HTGEKP+ C
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 58 -VVCGKAFSQSSNLITH-LRKHTGYKPFSCGL--CDKAFQRKVDLRRH 101
C KAFS +S+ H R H+ KP+ C L C K + LR+H
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
Score = 90.0 bits (224), Expect = 3e-24
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 3 QCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKH-TYIHTGEKPHKCVV 59
C K++ R L THL H+ +PY C++ C K F SD KH H+ EKP+ C +
Sbjct: 74 GCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL 133
Query: 60 --CGKAFSQSSNLITHLRKHTG 79
C K ++ S+L H++ G
Sbjct: 134 PGCTKRYTDPSSLRKHVKTVHG 155
Score = 83.8 bits (208), Expect = 8e-22
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 25 RPYPCQYCGKRFHQKSDMKKH---TYIHTGEKPHKCVVCG-----KAFSQSSNLITHLRK 76
C + F + + H +IH K C G + F L+ H+R+
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 77 HTGYKPFSCGL--CDKAFQRKVDLRRH 101
HTG KP C C K++ R +L+ H
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTH 88
Score = 53.0 bits (128), Expect = 7e-10
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHLRK---HTGYKPFSCGLCD-----KAFQRKVDLRRH 101
E + C + F L+ H+ H K F C + F+ + L H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Score = 26.8 bits (60), Expect = 1.6
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHRESQH 106
C + F + L H S+H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEH 27
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 108 bits (273), Expect = 2e-31
Identities = 42/114 (36%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPY---------PCQYCGKRFHQKSDMKKHTYIHTG 51
K C +TF L TH+ + P C GK F K + H +HTG
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG 87
Query: 52 EKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRH 101
EKP C CGK F++S NL H R HTG KPF C CD+ F D ++H
Sbjct: 88 EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141
Score = 101 bits (253), Expect = 1e-28
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCV 58
C + GK+FK L H+ +H+ +P+PC + CGK F + ++K H HTGEKP KC
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 59 V--CGKAFSQSSNLITHLRKHTGYKPFSC 85
C + F+ SS+ H+ HT K
Sbjct: 125 FEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 93.9 bits (234), Expect = 9e-26
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 4 CGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHK------- 56
G + + + I P + C + F ++ H + P +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 57 --CVVCGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRHR 102
C GK+F L+ H+R HTG KPF C C K F R +L+ H+
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112
Score = 44.2 bits (105), Expect = 1e-06
Identities = 11/57 (19%), Positives = 19/57 (33%)
Query: 60 CGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQHHI 116
G + ++ CD+ F +L H +H G P Q +H+
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 101 bits (254), Expect = 2e-29
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 2 KQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCG 61
+ C + F +S +L+ H+ IH+ +P+ C+ C + F + + H HTGEKP C +CG
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 62 KAFSQSSNLITHLRKHTGYK 81
+ F++S H + H K
Sbjct: 70 RKFARSDERKRHTKIHLRQK 89
Score = 101 bits (254), Expect = 2e-29
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
RPY C C +RF Q + +H IHTG+KP +C +C + FS+S +L TH+R HTG KP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 83 FSCGLCDKAFQRKVDLRRHR 102
F+C +C + F R + +RH
Sbjct: 63 FACDICGRKFARSDERKRHT 82
Score = 65.2 bits (160), Expect = 3e-15
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 52 EKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
E+P+ C V C + FSQS +L H+R HTG KPF C +C + F R L H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53
Score = 32.1 bits (74), Expect = 0.011
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 1 CKQCGKTFKRSSTLSTHLLIH 21
C CG+ F RS H IH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 104 bits (262), Expect = 2e-29
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 3 QCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC--V 58
CG + ++ L HL H+ +P+PC+ C K F + +H+ HTGEK C
Sbjct: 19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 59 VCGKAFSQSSNLITHLRKHTGYK--PFSCGL--CDKAFQRKVDLRRH 101
C F+ +N+ H + K + C C KAF++ L+ H
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
Score = 101 bits (253), Expect = 3e-28
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 1 CKQ--CGKTFKRSSTLSTHLLIHSD--TRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKP 54
C C F + + H + Y C + CGK F + + +K H + HT + P
Sbjct: 75 CDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLP 134
Query: 55 HKC--VVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
++C C K FS S L H + H GY C + +H H
Sbjct: 135 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 90.7 bits (226), Expect = 4e-24
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 17 HLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC--VVCGKAFSQSSNLIT 72
+ + Y C + CG +++ ++ H HTGEKP C C K F+ +L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 73 HLRKHTGYKPFSC--GLCDKAFQRKVDLRRHR 102
H HTG K F+C CD F K ++++H
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 94
Score = 73.4 bits (181), Expect = 2e-17
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 44 KHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSC--GLCDKAFQRKVDLR 99
+ K + C CG A++++ L HL KHTG KPF C C+K F L
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 100 RH 101
RH
Sbjct: 62 RH 63
Score = 34.9 bits (81), Expect = 0.003
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 71 ITHLRKHTGYKPFSCGL--CDKAFQRKVDLRRH 101
+ YK + C C A+ + L+ H
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAH 33
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 101 bits (253), Expect = 3e-29
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGE--KPHKCV 58
C+ CGK F+ L+ H L HS +PY C CG RF +K M H H G KP+ C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 59 VCGKAFSQSSNLITHLRK-HTGYK 81
CGK FS+ +L H+++ H+G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 97.2 bits (243), Expect = 1e-27
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG- 79
S + C+ CGK F + +H H+GEKP+ C VCG F + + H+R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 80 -YKPFSCGLCDKAFQRKVDLRRHRESQHPG 108
KP+ C C K F R L H + H G
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 94.0 bits (235), Expect = 9e-27
Identities = 35/73 (47%), Positives = 40/73 (54%)
Query: 11 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNL 70
S + + R Y C CGK F SD+ KH HTGEKP+KC CGKAF Q S+L
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHL 62
Query: 71 ITHLRKHTGYKPF 83
I H R HTG P
Sbjct: 63 IGHHRVHTGSGPS 75
Score = 81.7 bits (203), Expect = 6e-22
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 38 QKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVD 97
+ + + +KC CGK+FS SS+L H R HTG KP+ C C KAF ++
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 98 LRRH 101
L H
Sbjct: 62 LIGH 65
Score = 43.2 bits (103), Expect = 6e-07
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 66 QSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
S + + + + C C K+F DL +HR
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHR 38
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 94.5 bits (236), Expect = 9e-27
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
+P+ C+ C + F + + H HTGEKP C +CG+ F++S H P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPIL 60
Query: 85 CGLCDKAFQRKVDLRRHRESQ 105
++ + L
Sbjct: 61 EDKVEELLSKNYHLENEVARL 81
Score = 92.6 bits (231), Expect = 5e-26
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
C+ C + F RS L+TH+ H+ +P+ C CG++F + + K+H I P
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILEDKV 64
Query: 61 GKAFSQSSNL---ITHLRKHTGYK 81
+ S++ +L + L+K G +
Sbjct: 65 EELLSKNYHLENEVARLKKLVGER 88
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 92.5 bits (231), Expect = 4e-26
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 11 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNL 70
H + +PY C C F K ++ H +HTGEKP++C +CG F++ +NL
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 71 ITHLRKHTGYKPF 83
TH R H+G KP+
Sbjct: 62 KTHTRIHSGEKPY 74
Score = 79.8 bits (198), Expect = 3e-21
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 40 SDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLR 99
H+++ +KP+KC C +F NL +H HTG KP+ C +C F R +L+
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 100 RHR 102
H
Sbjct: 63 THT 65
Score = 68.2 bits (168), Expect = 1e-16
Identities = 21/55 (38%), Positives = 37/55 (67%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPH 55
C +C +F+ L++H +H+ +PY C CG +F++ +++K HT IH+GEKP+
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 41.3 bits (98), Expect = 3e-06
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 67 SSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ H KP+ C C +F+ K +L H+
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHK 37
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 91.8 bits (229), Expect = 1e-25
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHT 78
+ T CGK + + S +K H HTGEKP+ C CG F++S L H RKHT
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 79 GYKPFSCGLCDKAFQRKVDLRRHR 102
G++PF C CD+AF R L H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHM 85
Score = 88.4 bits (220), Expect = 2e-24
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCV 58
CGKT+ +SS L HL H+ +PY C + CG +F + ++ +H HTG +P +C
Sbjct: 10 YAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69
Query: 59 VCGKAFSQSSNLITHLRKH 77
C +AFS+S +L H+++H
Sbjct: 70 KCDRAFSRSDHLALHMKRH 88
Score = 26.3 bits (59), Expect = 1.5
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 76 KHTGYKPFSCGLCDKAFQRKVDLRRH 101
K T C K + + L+ H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAH 26
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 91.0 bits (227), Expect = 2e-25
Identities = 35/70 (50%), Positives = 43/70 (61%)
Query: 14 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITH 73
S IHS +PY C CGK F + S + +H +HTGEKP+KC+ CGKAFSQ+S LI H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 74 LRKHTGYKPF 83
R HT
Sbjct: 62 QRIHTSGPSS 71
Score = 79.8 bits (198), Expect = 4e-21
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ IH+GEKP+ CV CGKAFS+SS L+ H R HTG KP+ C C KAF + L H+
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 37.1 bits (87), Expect = 1e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 70 LITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
H+G KP+ C C KAF R L +H+
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQ 34
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 91.0 bits (227), Expect = 2e-25
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 13 TLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGE----KPHKCVVCGKAFSQSS 68
+ + H+ +PY C +C K F QK + H + C CGK F++ +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 69 NLITHLRKHTGYKPFSCGLCDKAF 92
+ H G +
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 81.0 bits (201), Expect = 2e-21
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 1 CKQCGKTFKRSSTLSTHLLIH----SDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHK 56
C C KTF++ L H + + C CGK F +++ M +H G +
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE 77
Query: 57 CVVCGKAF 64
G +
Sbjct: 78 GENSGPSS 85
Score = 75.6 bits (187), Expect = 2e-19
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG----YKPFSCGLCDKAFQRKVDLR 99
HTGEKP+ C C K F Q L H +++ F C C K F R+ +
Sbjct: 5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMA 64
Query: 100 RH 101
RH
Sbjct: 65 RH 66
Score = 40.2 bits (95), Expect = 1e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 69 NLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ + R HTG KP++C CDK F++K L H
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH 34
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 87.7 bits (218), Expect = 5e-24
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 7 TFKRSSTLSTHLLIHSDTRPYPCQ--YCGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGK 62
+ S R + C C K + + S +K H HTGEKP+KC C
Sbjct: 2 SSGSSGPDLEK------RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDW 55
Query: 63 AFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
F++S L H RKHTG KPF CG+C+++F R L H
Sbjct: 56 RFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 84.6 bits (210), Expect = 1e-22
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 4 CGKTFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCG 61
C K + +SS L HL H+ +PY C + C RF + ++ +H HTG KP +C VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 62 KAFSQSSNLITHLRKHT 78
++FS+S +L H+++H
Sbjct: 83 RSFSRSDHLALHMKRHQ 99
Score = 48.8 bits (117), Expect = 7e-09
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 2 KQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHT 50
+ C F RS L+ H H+ +P+ C C + F + + H H
Sbjct: 51 EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 28.7 bits (65), Expect = 0.24
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSD 23
C C ++F RS L+ H+ H +
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQN 100
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 85.6 bits (213), Expect = 2e-23
Identities = 19/65 (29%), Positives = 26/65 (40%)
Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGY 80
S P C C K+ ++ H IH ++P KC C Q SNL H++K G
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Query: 81 KPFSC 85
Sbjct: 64 MSGPS 68
Score = 76.4 bits (189), Expect = 6e-20
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ P KC C + S + L H R H +PF C C ++ +L +H
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 67.1 bits (165), Expect = 3e-16
Identities = 16/57 (28%), Positives = 23/57 (40%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
C +C + + L H IH RP+ C YC Q S++ KH G+
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 37.1 bits (87), Expect = 1e-04
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 75 RKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ P C C + K LR H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH 28
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 84.9 bits (211), Expect = 4e-23
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 21 HSDTRPYPCQY--CGKRFHQKSDMKKHTYI-HTGEKPHKC--VVCGKAFSQSSNLITHLR 75
S + PC + CG+ F + + H H +K C CGK+F+ +L H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 76 KHTGYKPFSCGLCDKAF 92
H+ + + C +
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 76.4 bits (189), Expect = 7e-20
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 1 CKQCGKTFKRSSTLSTHLLI-HSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC 57
CG+ F L+ H H + + C CGK F+ K +K+H +H+ + + C
Sbjct: 12 FPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
Query: 58 VVCGKAF 64
G +
Sbjct: 72 EFSGPSS 78
Score = 67.2 bits (165), Expect = 3e-16
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 49 HTGEKPHKCVV--CGKAFSQSSNLITHLR-KHTGYKPFSC--GLCDKAFQRKVDLRRHR 102
+G C CG+ FS L H + +H K FSC C K+F K L+ H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Score = 32.5 bits (75), Expect = 0.008
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 77 HTGYKPFSCGL--CDKAFQRKVDLRRHRESQHPG 108
+G C C + F + L H++ QH
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIH 35
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 85.0 bits (211), Expect = 5e-23
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 27 YPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC--VVCGKAFSQSSNLITHLRKHTGYKP 82
Y C + CGK F + + +K H + HT + P++C C K FS S L H + H GY
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 83 FSCGLCDKAFQRKVDLRRHRESQH 106
C + +H H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 84.5 bits (210), Expect = 6e-23
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 13 TLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGE--KPHKCVVCGKAFSQSSNL 70
+ + HS +PY C C RF Q MK H E C C ++ S+L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 71 ITHLRK-HTGYKPFS 84
HLRK H+ P S
Sbjct: 62 GVHLRKQHSYSGPSS 76
Score = 83.0 bits (206), Expect = 2e-22
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 43 KKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTG--YKPFSCGLCDKAFQRKVDLRR 100
H+GEKP++C +C F+QS + H+ + F C CD RK DL
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 101 HRESQHPG 108
H QH
Sbjct: 64 HLRKQHSY 71
Score = 64.9 bits (159), Expect = 2e-15
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHS--DTRPYPCQYCGKRFHQKSDMKKHT-YIHTGEKPH 55
C C F +S T+ H+L + + C +C +KSD+ H H+ P
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 41.4 bits (98), Expect = 3e-06
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 69 NLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ + R H+G KP+ C +C F + ++ H
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI 35
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 82.8 bits (205), Expect = 3e-22
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHT---GYKPFSCGLCDKAFQRKVDLRRHRESQ 105
+G +C +CG Q ++L H RKH F C C K F++ + HR
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 106 HPGSPAQQHHISSTS 120
HP S S
Sbjct: 62 HPALLLAPQESSGPS 76
Score = 71.3 bits (175), Expect = 9e-18
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHT---GEKPHKCVVCGKAFSQSSNLITHLRKH 77
S + C+ CG QK+ + H H C CGK F + ++ H K
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 78 TGYKPFSC 85
+
Sbjct: 62 HPALLLAP 69
Score = 63.6 bits (155), Expect = 8e-15
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDT---RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
C+ CG T ++ ++L+ H H++T +PC++CGKRF + + H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Query: 58 VVCGKAFS 65
S
Sbjct: 70 QESSGPSS 77
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 76.8 bits (190), Expect = 4e-20
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRK-HTG 79
R + C+ C + F ++ +K+H HT EKP+ C +C +AF++ LI H +K H+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 69.8 bits (172), Expect = 2e-17
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG 108
+ C VC +AF++ +L H R HT KP+ CGLC++AF R+ L RH + H G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 29.4 bits (67), Expect = 0.078
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 1 CKQCGKTFKRSSTLSTH 17
C C + F R L H
Sbjct: 33 CGLCNRAFTRRDLLIRH 49
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 76.4 bits (189), Expect = 7e-20
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 20 IHSDTRPYPCQYCGKRFHQKSDMKKH--TYIHTGEKPHKCVVCGKAFSQSSNLITHLRKH 77
Y C+ C + + S+ +H T K + C C K F++ N+ H++
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 78 TG 79
Sbjct: 64 HK 65
Score = 75.3 bits (186), Expect = 2e-19
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 48 IHTGEKPHKCVVCGKAFSQSSNLITHLR--KHTGYKPFSCGLCDKAFQRKVDLRRHRESQ 105
GE ++C VC + ++ SN H K + C C K F RK ++ H +
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 106 HP 107
H
Sbjct: 64 HK 65
Score = 34.8 bits (81), Expect = 7e-04
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 75 RKHTGYKPFSCGLCDKAFQRKVDLRRHRESQH 106
G + C +C + + + RH + H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34
Score = 30.6 bits (70), Expect = 0.025
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 1 CKQCGKTFKRSSTLSTHLLIH 21
C C K F R ++ H+ I
Sbjct: 43 CPFCFKEFTRKDNMTAHVKII 63
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 68.0 bits (167), Expect = 9e-17
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRK-HTGYKPFSCGLCDKAF 92
+ KP+ C CGK FS+ +L H+++ HT +P C +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 64.5 bits (158), Expect = 2e-15
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-YIHTGEKPHKCVVCGKAFSQ 66
+ S +PY CQ CGK F + + H +HT E+PHKC V S
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 32.9 bits (76), Expect = 0.003
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG 108
+ + KP+ C C K F R L H + H
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTS 38
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 67.5 bits (166), Expect = 1e-16
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
TGEKP++C C KAF+ SNL+ H R HTG S G
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
Score = 50.2 bits (121), Expect = 7e-10
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C C K F+ KS++ H HTGE
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 35.9 bits (84), Expect = 2e-04
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +C K F S L H H+
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 35.9 bits (84), Expect = 2e-04
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C KAF K +L H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 67.6 bits (166), Expect = 1e-16
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
GE+ H+C CGK F Q+SN I H R HTG KP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 4e-09
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ R + C CGK F Q S+ +H IHTGEKP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 7e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C CGK F ++S H IH+ +P
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ G + C C K F + + +HR
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHR 32
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 66.7 bits (164), Expect = 2e-16
Identities = 20/43 (46%), Positives = 21/43 (48%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
TG KP+ C CGKAF S LI H R HTG S G
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG 44
Score = 49.8 bits (120), Expect = 9e-10
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F KS + HT HTGE
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 35.5 bits (83), Expect = 2e-04
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F+ S L H H+
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 34.8 bits (81), Expect = 5e-04
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C KAF+ K L H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 2e-16
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+KC CGK ++ NL H + HTG +P
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 50.6 bits (122), Expect = 5e-10
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C+ CGK ++ K ++ H +HTGE+P
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 36.7 bits (86), Expect = 1e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C++CGK + L H +H+ RP
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 35.2 bits (82), Expect = 4e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C K + K +L H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 66.4 bits (163), Expect = 4e-16
Identities = 19/42 (45%), Positives = 20/42 (47%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TG KP+ C C K FS S LI H R HTG KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 49.1 bits (118), Expect = 2e-09
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C C K F KS + H HTG KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 35.6 bits (83), Expect = 3e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C QC KTF S L H H+ +P
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 34.4 bits (80), Expect = 7e-04
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C K F K L H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 4e-16
Identities = 23/41 (56%), Positives = 25/41 (60%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
GEK +KC VCGK FSQSS+L TH R HTG KP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 6e-10
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + Y C CGK F Q S ++ H +HTGEKP
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 3e-04
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C CGK F +SS L TH +H+ +P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ G K + C +C K F + L+ H+
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQ 32
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 66.0 bits (162), Expect = 4e-16
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
TGE P++C CGK FS+ L++H + H+G S G
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG 44
Score = 46.7 bits (112), Expect = 1e-08
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + PY C CGK F +K + H H+G+
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 36.3 bits (85), Expect = 1e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F R L +H HS
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG P+ C C K F RK L H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSH 31
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 5e-16
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+KC VCGKAF SS+L+ H H+G +P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 49.8 bits (120), Expect = 8e-10
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ +PY CQ CGK F S + +H +H+GE+P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 37.5 bits (88), Expect = 5e-05
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C+ CGK F+ SS L H +HS RP
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 33.6 bits (78), Expect = 0.001
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
TG KP+ C +C KAF+ L +H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 66.6 bits (163), Expect = 6e-16
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 8 FKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFS 65
+ L +++ RPY C C +RF + ++ +H IHTG+KP +C +C + FS
Sbjct: 3 PHPMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 66 QSSNLITHLRKHT 78
+S +L TH+R HT
Sbjct: 61 RSDHLTTHIRTHT 73
Score = 62.7 bits (153), Expect = 2e-14
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 35 RFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAF 92
H +++ + + +P+ C V C + FS+S L H+R HTG KPF C +C + F
Sbjct: 2 EPHPMNNLLNY--VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Query: 93 QRKVDLRRHR 102
R L H
Sbjct: 60 SRSDHLTTHI 69
Score = 46.9 bits (112), Expect = 3e-08
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 4 CGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHT 50
C + F RS L+ H+ IH+ +P+ C+ C + F + + H HT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 26.5 bits (59), Expect = 0.94
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHS 22
C+ C + F RS L+TH+ H+
Sbjct: 52 CRICMRNFSRSDHLTTHIRTHT 73
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 65.6 bits (161), Expect = 7e-16
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
+GE P++C CGKAF++ LI+H R H G S G
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42
Score = 49.0 bits (118), Expect = 2e-09
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 20 IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
S PY C CGK F++K + H H GE
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 36.7 bits (86), Expect = 9e-05
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F R L +H H+
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 31.3 bits (72), Expect = 0.008
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 75 RKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+G P+ C C KAF RK L H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 7e-16
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
+GEKP+KC CGKAF + ++L H R HTGY+P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 49.8 bits (120), Expect = 9e-10
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ S +PY C CGK FH+ + + +H IHTG +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 36.7 bits (86), Expect = 1e-04
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F R + L+ H IH+ RP
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 34.4 bits (80), Expect = 6e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ +G KP+ C C KAF R L HR
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHR 32
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 7e-16
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+ C VCGKAF S++L HLR HT
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 48.7 bits (117), Expect = 2e-09
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ +PY C CGK F + + +H +HT E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 36.7 bits (86), Expect = 1e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C CGK F S+ L+ HL +H+
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
TG KP+SC +C KAF L +H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHL 32
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 65.6 bits (161), Expect = 7e-16
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TG++P++C+ CGKAF S+LI H R HTG KP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 7e-10
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + RPY C CGK F KS + H HTGEKP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 36.4 bits (85), Expect = 1e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK FK S+L H H+ +P
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 7e-04
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ TG +P+ C C KAF+ K L HR
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHR 32
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 7e-16
Identities = 21/41 (51%), Positives = 23/41 (56%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP +C C KAF+ SNLI H R HTG KP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 49.0 bits (118), Expect = 2e-09
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +P+ C C K F+ KS++ H HTGEKP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 35.5 bits (83), Expect = 2e-04
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KPF C C KAF K +L H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 34.0 bits (79), Expect = 0.001
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +C K F S L H H+ +P
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 7e-16
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
+ EKP+KC CGK +++ NL H R H G K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 51.0 bits (123), Expect = 3e-10
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ S +PY C+ CGK ++++ ++ H +H GEK
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 35.9 bits (84), Expect = 2e-04
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C+ CGK + R L H +H +
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 35.5 bits (83), Expect = 3e-04
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ + KP+ C C K + R+++L H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 8e-16
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGE P C CGK F+ +NLI H + HTG +P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 49.4 bits (119), Expect = 1e-09
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + P+ C CGK F K+++ H IHTGE+P
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 35.9 bits (84), Expect = 2e-04
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG PF C C K F K +L H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 34.8 bits (81), Expect = 5e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F + L H IH+ RP
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 65.2 bits (160), Expect = 9e-16
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
+GEKP++C CGKAF S LI H R H G S G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG 44
Score = 49.5 bits (119), Expect = 1e-09
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ S +PY C CGK F KS + H H G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F S L H H+
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 33.7 bits (78), Expect = 0.001
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ +G KP+ C C KAF K L H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 9e-16
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGE+P+ C VCGKAF+ SNLI H + HTG KP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 4e-10
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + RPY C CGK F +S++ KH IHTGEKP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 35.5 bits (83), Expect = 3e-04
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQ 30
C CGK F S L H IH+ +P
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 5e-04
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG +P+ C +C KAF + +L +H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.3 bits (160), Expect = 1e-15
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKPH+C CGK+FS +S LI H R HTG P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 48.7 bits (117), Expect = 3e-09
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +P+ C+ CGK F S + H IHTGE P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 36.4 bits (85), Expect = 1e-04
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C++CGK+F +S L H IH+ P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 32.5 bits (75), Expect = 0.004
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP C C K+F L H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 1e-15
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP KC +CGK+F S L H HT KP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-10
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +P+ C CGK F +S + +H+ +HT EKP
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 36.3 bits (85), Expect = 1e-04
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KPF C +C K+F + L RH
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 35.5 bits (83), Expect = 2e-04
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C CGK+F S L+ H ++H+ +P
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 65.2 bits (160), Expect = 1e-15
Identities = 22/42 (52%), Positives = 24/42 (57%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP +C CGK+FS SS L TH R HTG KP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 49.0 bits (118), Expect = 2e-09
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +P+ C CGK F S + H IHTGEKP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 5e-05
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK+F SS L+TH IH+ +P
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KPF C C K+F L H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 64.8 bits (159), Expect = 1e-15
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEK +KC CGK FS++S L H + HTG KP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-09
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + + Y C CGK F + S + +H IHTGEKP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 9e-05
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F R+S LS H IH+ +P
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG K + C C K F R L +H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 1e-15
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
+GEKP+KC CGK F+Q+S+L H R HTG KP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-10
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ S +PY C CGK F Q S + H IHTGEKP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 1e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F ++S L+ H IH+ +P
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 8e-04
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ +G KP+ C C K F + L H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHW 32
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 1e-15
Identities = 20/41 (48%), Positives = 23/41 (56%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+KC VC K+F S+L H R HTG KP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-10
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C C K F S + H IHTGEKP
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 8e-05
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQ 30
C C K+F+ S+L+ H IH+ +P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.001
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C +C K+F+ L H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 1e-15
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
+GEKP+ C CGKAF S+ L+ H R HTG KP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 2e-10
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ S +PY C YCGK F +++ +H IHTGEKP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 1e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C CGK F S+ L H IH+ +P
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ +G KP+ C C KAF +L RH
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 1e-15
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+KC CGK F+Q+S+L H R HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 50.6 bits (122), Expect = 5e-10
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F Q S + H IHTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 36.0 bits (84), Expect = 2e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F ++S L+ H IH+ +P
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 34.4 bits (80), Expect = 7e-04
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C K F + L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 1e-15
Identities = 23/42 (54%), Positives = 25/42 (59%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+KC CGKAFSQ+S L H R HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-10
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F Q S + +H IHTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 2e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F ++S L+ H IH+ +P
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.001
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ TG KP+ C C KAF + L RH+
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQ 32
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 1e-15
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEK + C CGK+FS++ L+ H R H+G KP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-10
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + + Y C+ CGK F + + KH +H+GEKP
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 37.5 bits (88), Expect = 5e-05
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
CK+CGK+F R+ L H +HS +P
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 36.4 bits (85), Expect = 1e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG K ++C C K+F R L +H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 1e-15
Identities = 20/42 (47%), Positives = 21/42 (50%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+ C CGKAF S L H R HTG KP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 7e-10
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C+ CGK F S +++H IHTGEKP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 36.4 bits (85), Expect = 1e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C++CGK F S L H IH+ +P
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 5e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP++C C KAF L+ H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 1e-15
Identities = 20/41 (48%), Positives = 23/41 (56%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+ C CGKAF+ SNLI H + HT KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 51.0 bits (123), Expect = 3e-10
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F +S++ KH IHT +KP
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 36.0 bits (84), Expect = 2e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F S L H IH+ +P
Sbjct: 15 CAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 34.8 bits (81), Expect = 5e-04
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C KAF + +L +H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 1e-15
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP++C CGKAF+ SNL TH + HTG KP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-09
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F +S++ H IHTGEKP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 3e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C KAF + +L H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 34.8 bits (81), Expect = 5e-04
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F S L TH IH+ +P
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 64.5 bits (158), Expect = 2e-15
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP++C CGKAFSQ+++LI H R HTG KP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 3e-09
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C+ CGK F Q + + +H +HTGEKP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 1e-04
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
CK+CGK F +++ L H +H+ +P
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.001
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C KAF + L +H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 2e-15
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP++C VCGKAFS +L H R H+G KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 48.3 bits (116), Expect = 4e-09
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ +PY C CGK F + + H IH+G+KP
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 37.1 bits (87), Expect = 6e-05
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C CGK F +LS H IHS +P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 33.6 bits (78), Expect = 0.001
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
TG KP+ C +C KAF + L H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.4 bits (158), Expect = 2e-15
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+KC CGK F+Q+S+L H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 7e-10
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F Q S + +H IHTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 2e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F ++S L+ H IH+ +P
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 6e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ TG KP+ C C K F + L RHR
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHR 32
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 2e-15
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TG KP++C CGKAFSQ+S L H R HTG KP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 8e-10
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F Q S + +H +HTGEKP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 2e-04
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F ++S L+ H +H+ +P
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.001
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ TG KP+ C C KAF + L RH+
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQ 32
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 64.5 bits (158), Expect = 2e-15
Identities = 21/42 (50%), Positives = 23/42 (54%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP KCV CGK FS+ S L H + HTG KP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 49.1 bits (118), Expect = 2e-09
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +P+ C CGK F ++S + H +HTGEKP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 2e-04
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ TG KPF C C K F R+ L H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHH 32
Score = 35.6 bits (83), Expect = 3e-04
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F R S L+ H +H+ +P
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 2e-15
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP++C +CGK+F++ S L H + HTG KP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 49.5 bits (119), Expect = 1e-09
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F +KS + H IHTGEKP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 9e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C CGK+F + S L H IH+ +P
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 34.1 bits (79), Expect = 9e-04
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C +C K+F +K L H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 2e-15
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP++C VC KAF+Q ++L H + HTG KP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 9e-10
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C+ C K F QK+ + +H HTGEKP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 1e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
CK C K F + + L+ H H+ +P
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C +C KAF +K L +H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 2e-15
Identities = 22/41 (53%), Positives = 26/41 (63%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGE+PHKC CGK+F QS++LI H R HTG KP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 6e-10
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + RP+ C CGK F Q + + +H IHTGEKP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 4e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK+F +S+ L H IH+ +P
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 5e-04
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ TG +P C C K+F + L +H+
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQ 32
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 2e-15
Identities = 20/42 (47%), Positives = 22/42 (52%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TG KP+ C CGKAFS S+L TH HTG KP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 8e-10
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F S + H IHTGEKP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 1e-04
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F S+L+TH +IH+ +P
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C KAF L H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 2e-15
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGE P++C CGKAFS+ LI+H R H G KP
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-09
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + PY C CGK F +K + H H GEKP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 35.9 bits (84), Expect = 2e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F R L +H H+ +P
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 34.4 bits (80), Expect = 7e-04
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG P+ C C KAF RK L H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.4 bits (158), Expect = 2e-15
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
+GEKP KC CGKAF Q+ +L +HLR HTG KP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-10
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ S +P+ C+ CGK F Q + H IHTGEKP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 1e-04
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
CK+CGK F+++ L++HL IH+ +P
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 8e-04
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ +G KPF C C KAF++ + L H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 64.1 bits (157), Expect = 2e-15
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+ C CGK+F +S L+ H R H+G KP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 51.4 bits (124), Expect = 2e-10
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C+ CGK F S + KH +H+GEKP
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 38.3 bits (90), Expect = 3e-05
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
CK+CGK+F+ +S L H +HS +P
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.001
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP++C C K+F+ L +H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 2e-15
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGE+ ++C CGKAF++ S LI H R HTG KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 6e-10
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + R Y C CGK F +KS + H IHTGEKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 1e-04
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F R STL H IH+ +P
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 5e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG + + C C KAF RK L H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 2e-15
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
G+K KC C K F+QSS+L H R HTG KP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 4e-10
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + + + C C K F Q S + H IHTGEKP
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 1e-04
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +C KTF +SS+L+ H IH+ +P
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 6e-04
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ G K F C C K F + L H+
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQ 32
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 2e-15
Identities = 20/42 (47%), Positives = 21/42 (50%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP C+ CGKAFS L H R HTG KP
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 4e-09
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +P+ C CGK F + +H IHTGEKP
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 4e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C CGK F L+ H IH+ +P
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 8e-04
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ TG KPF C C KAF + L +HR
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHR 32
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 2e-15
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP++C CGKAF+Q +NL H R HTG KP
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 8e-10
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F QK+++ +H IHTGEKP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 2e-04
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F + + L+ H IH+ +P
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 4e-04
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ CG C KAF +K +L +H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 2e-15
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+KC CGKAF++ S L H + HTG +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 48.7 bits (117), Expect = 2e-09
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F +KS + H HTGE+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 36.3 bits (85), Expect = 1e-04
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C KAF RK L H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 35.6 bits (83), Expect = 2e-04
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C CGK F R S L H H+ R
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 2e-15
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
+GEKP KC CGK F+Q+S L +H R HTG KP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 2e-10
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ S +P+ C+ CGKRF Q S + H +HTGEKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 4e-04
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C++CGK F ++S L +H +H+ +P
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 4e-04
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ +G KPF C C K F + L H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 2e-15
Identities = 22/41 (53%), Positives = 23/41 (56%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+KC CGKAF SNL TH HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 6e-10
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F S++ H IHTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 1e-04
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F+ S L+TH +IH+ +P
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 7e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C KAF+ +L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 2e-15
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
+GEKP+KCV CGK + + +L H R HTG K
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 50.6 bits (122), Expect = 4e-10
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ S +PY C CGK + ++ D+ H +HTGEK
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 36.0 bits (84), Expect = 2e-04
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ +G KP+ C C K ++R++DL H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 35.6 bits (83), Expect = 3e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK +KR L H +H+ +
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 64.1 bits (157), Expect = 3e-15
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TG+KP +C CGK+F NL+TH R HTG K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 50.2 bits (121), Expect = 6e-10
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +P+ C +CGK F K ++ H IHTGEK
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 37.5 bits (88), Expect = 5e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C CGK+F+ L TH IH+ + P
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 35.6 bits (83), Expect = 3e-04
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KPF C C K+F+ K +L H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 3e-15
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP KC CGK+++Q +L H R HTG KP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-09
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +P+ C CGK ++Q+ + +H +HTGEKP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 3e-04
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK++ + L+ H +H+ +P
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 5e-04
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KPF CG C K++ ++V L +H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 64.1 bits (157), Expect = 3e-15
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+KC CGK F +L TH HTG KP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 2e-10
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C+ CGK F + D+ H +HTGEKP
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 2e-04
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C++CGK F L TH ++H+ +P
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 4e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C K F + DL H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 3e-15
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+KC CGKAF S+L H H+G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 48.7 bits (117), Expect = 2e-09
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F +S + H H+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 36.4 bits (85), Expect = 1e-04
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F+ S+L+ H HS +P
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C KAF+ + L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 3e-15
Identities = 20/42 (47%), Positives = 23/42 (54%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+ C CGK+F Q S+L H R HTG KP
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 6e-10
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F QKS + +H IHTGEKP
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 3e-04
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ TG KP+ C C K+F +K L RHR
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHR 32
Score = 35.6 bits (83), Expect = 3e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK+F + S L+ H IH+ +P
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 3e-15
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
+GE+P KC CGK F + S+L HLR H+ K
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 49.1 bits (118), Expect = 2e-09
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ S RP+ C CGK F ++S + H +H+ EK
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 36.7 bits (86), Expect = 1e-04
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F R S L+ HL +HS +
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ +G +PF C C K F R+ L H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH 31
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 3e-15
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP++C VC KAFS ++L H R H+G KP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-09
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C C K F + + +H +H+GEKP
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 36.3 bits (85), Expect = 1e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C C K F ++L+ H +HS +P
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.001
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C +C KAF L +H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQH 31
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 4e-15
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGE+ ++C CGKAF Q S L H R H G KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 49.8 bits (120), Expect = 8e-10
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + R Y C CGK F QKS + H IH GEKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 36.7 bits (86), Expect = 1e-04
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F + STLS H IH +P
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 34.4 bits (80), Expect = 7e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG + + C C KAF +K L H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMH 31
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 4e-15
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+KC CGK F+Q+S+L+ H HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-10
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F Q S + +H IHTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 35.5 bits (83), Expect = 3e-04
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F ++S L H IH+ +P
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 6e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ TG KP+ C C K F + L RHR
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHR 32
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 4e-15
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+KC CGK F ++S+L H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-09
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F + S + +H IHTGEKP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 1e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F+R+S L+ H LIH+ +P
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 5e-04
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C K F+R L RH
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 4e-15
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
+GEKP +C CGK F+Q+S+L +H R HTG KP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 49.9 bits (120), Expect = 1e-09
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ S +P+ C+ CGKRF Q S + H +HTGEKP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 2e-04
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C++CGK F ++S L +H +H+ +P
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.001
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ +G KPF C C K F + L H+
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQ 32
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 4e-15
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+KC CGK F+Q+S+L H R HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 49.8 bits (120), Expect = 9e-10
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F Q S + +H +HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 35.6 bits (83), Expect = 2e-04
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F ++S L+ H +H+ +P
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ TG KP+ C C K F + L RHR
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHR 32
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 63.7 bits (156), Expect = 4e-15
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 48 IHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
+GEKP C C KAFS S L+ H + H KP
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 47.5 bits (114), Expect = 7e-09
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 20 IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
S +P+ C C K F KS + H H EKP
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 34.8 bits (81), Expect = 5e-04
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C C K F S L H H++ +P
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 33.3 bits (77), Expect = 0.002
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 77 HTGYKPFSCGLCDKAFQRKVDLRRH 101
+G KPF C C+KAF K L H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVH 29
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 4e-15
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
GEKP++C CGK+FS S L H HT KP
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 48.3 bits (116), Expect = 4e-09
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ +PY C CGK F + +H HT EKP
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 36.8 bits (86), Expect = 9e-05
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK+F S L+ H + H+ +P
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 32.5 bits (75), Expect = 0.004
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ G KP+ C C K+F L +H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 4e-15
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP++C CGK+F + S L H R HTG P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 49.5 bits (119), Expect = 1e-09
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F +KS + H IHTGE P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 36.4 bits (85), Expect = 1e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C CGK+F + S L H IH+ P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 34.8 bits (81), Expect = 5e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C K+F +K L H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 63.3 bits (155), Expect = 5e-15
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
+GEKP KC CGK F +S +H R H+G KP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 49.5 bits (119), Expect = 1e-09
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ S +P+ C+ CGK F+ S H H+GEKP
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 35.2 bits (82), Expect = 4e-04
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCG 33
C++CGK F +S +H HS +P G
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 34.5 bits (80), Expect = 6e-04
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ +G KPF C C K F H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 5e-15
Identities = 20/41 (48%), Positives = 23/41 (56%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
GEKP+ C CGKAFS S LI H+R H+G KP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 49.1 bits (118), Expect = 2e-09
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F KS + H H+GEKP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 35.6 bits (83), Expect = 3e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F S L H+ HS +P
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 34.1 bits (79), Expect = 9e-04
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ G KP+ C C KAF K L H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 5e-15
Identities = 20/41 (48%), Positives = 22/41 (53%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
+GEKP+ C CGK FSQ S L H R HTG KP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-10
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ S +PY C CGK F QKS + H HTGEKP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 2e-04
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGKTF + S LS H H+ +P
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ +G KP+ C C K F +K L H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 5e-15
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TG+KP+KC CGK F+Q+S+L H HTG KP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-10
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F Q S + +H IHTGEKP
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 1e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F ++S L+ H IH+ +P
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 4e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ TG KP+ C C K F + L RHR
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHR 32
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.4 bits (155), Expect = 6e-15
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+KC+ CGKAF +S+ H R HTG +P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 49.9 bits (120), Expect = 1e-09
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F S +H +HTG++P
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 36.4 bits (85), Expect = 1e-04
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F +S+ + H +H+ RP
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 33.7 bits (78), Expect = 0.001
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C KAF +H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 6e-15
Identities = 20/41 (48%), Positives = 22/41 (53%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+KC CGK F +S L H R HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 9e-10
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F S + +H IHTGEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 1e-04
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F+ +S LS H IH+ +P
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 6e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C K F+ L RH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 63.9 bits (156), Expect = 6e-15
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 11 SSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKCVV--CGKAFSQ 66
SS S + S R + C + CGK + + S +K HT HTGEKP C C + F++
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 67 SSNLITHLRKH 77
S L H R H
Sbjct: 62 SDELSRHRRTH 72
Score = 57.4 bits (139), Expect = 2e-12
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 39 KSDMKKHTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSCGL--CDKAFQR 94
S + + H C CGK + +SS+L H R HTG KPFSC C++ F R
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 95 KVDLRRHR 102
+L RHR
Sbjct: 62 SDELSRHR 69
Score = 43.5 bits (103), Expect = 5e-07
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 4 CGKTFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIH 49
CGKT+ +SS L H H+ +P+ C + C +RF + ++ +H H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 6e-15
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP++C CGKAFS S+L TH HTG KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 48.7 bits (117), Expect = 2e-09
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F +S + H IHTG+KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 37.1 bits (87), Expect = 7e-05
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C QCGK F S+L+TH IH+ +P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C KAF + L H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 6e-15
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP+KC CGK+F+ S L H + HTG +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 50.6 bits (122), Expect = 4e-10
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +PY C CGK F KS ++ H HTGE+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 36.0 bits (84), Expect = 2e-04
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP+ C C K+F K LR H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 34.4 bits (80), Expect = 7e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C CGK+F S L H H+ R
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 8e-15
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TG K +C CGKAF++ S L H + HTG KP
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 8e-10
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 15 STHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + + + C CGK F +KS + H IHTGEKP
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 7e-05
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F R STLS H IH+ +P
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 3e-04
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG K F C C KAF RK L H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 9e-15
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
+GE+P+ C CGK F + S+LI HL++H K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 50.6 bits (122), Expect = 4e-10
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
S RPY C CGK F + S + +H H EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 37.1 bits (87), Expect = 6e-05
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F R S L HL H +
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+G +P+ C C K F R L H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEH 31
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 62.6 bits (153), Expect = 9e-15
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
+ GEKP++C CGKAFSQ +LI H+R HTG P S
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 45.3 bits (108), Expect = 5e-08
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPH 55
+PY C CGK F QK + H +HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 33.7 bits (78), Expect = 0.001
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPY 27
C QCGK F + +L H+ +H+ + P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 33.3 bits (77), Expect = 0.002
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
G KP+ C C KAF +K L H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 62.6 bits (153), Expect = 1e-14
Identities = 19/41 (46%), Positives = 19/41 (46%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP KC CGKAF S LI H R H K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 46.0 bits (110), Expect = 3e-08
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +P C CGK F KS + H H +K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 34.1 bits (79), Expect = 8e-04
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F S L H H D +
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KP C C KAF K L H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 62.2 bits (152), Expect = 1e-14
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
+ GEKP+KC CG F Q ++L H+ HTG P S
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 46.4 bits (111), Expect = 2e-08
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPH 55
+PY C+ CG RF Q + ++ H IHTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 33.3 bits (77), Expect = 0.002
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
G KP+ C C F + LR H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH 30
Score = 32.9 bits (76), Expect = 0.002
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPY 27
C+ CG F + + L H+LIH+ + P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPS 40
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 1e-14
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
+G+KP++C C K F Q +L H R HTG +
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 48.3 bits (116), Expect = 4e-09
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ S +PY C+ C K F Q + +H +HTGE+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 37.1 bits (87), Expect = 7e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
CK+C KTF + L+ H +H+ R
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 32.5 bits (75), Expect = 0.004
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ +G KP+ C C K F + L +H+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHK 32
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 62.2 bits (152), Expect = 2e-14
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
+ K H+C CG+ F+ S+L H R HTG KP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 2e-08
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ S T+ + C CG+ F KS + +H IHTGEKP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.001
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CG+ F S L+ H IH+ +P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.003
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ + K C C + F K L +H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 62.1 bits (152), Expect = 2e-14
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
+ GEKP+ C +CG F L +HLR HTG P S
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 51.3 bits (124), Expect = 2e-10
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPH 55
+PYPC+ CG RF +K H IHTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 34.4 bits (80), Expect = 7e-04
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPY 27
C+ CG F+ TL +HL IH+ + P
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 33.2 bits (77), Expect = 0.002
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
G KP+ C +C F+ L+ H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSH 30
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 61.8 bits (151), Expect = 2e-14
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
G P+KC C K+FS L+ H R HT KP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 48.3 bits (116), Expect = 4e-09
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + PY C C K F K + H +HT EKP
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 34.1 bits (79), Expect = 0.001
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C QC K+F L H +H+ +P
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 33.7 bits (78), Expect = 0.001
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ G P+ C C+K+F K+ L H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 61.4 bits (150), Expect = 3e-14
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
GEK KC C FSQ+S+L H H G KP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 48.7 bits (117), Expect = 3e-09
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + + C+ C F Q S ++ H +H GEKP
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 34.8 bits (81), Expect = 4e-04
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ G K + C CD F + LR H+
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQ 32
Score = 33.7 bits (78), Expect = 0.001
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C++C F ++S+L H +H +P
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 3e-14
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
TGEKP +C CG FS S +L HLR H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 45.3 bits (108), Expect = 5e-08
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +P+ C+ CG F + KH H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 39.1 bits (92), Expect = 1e-05
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
CK+CG F S +L HL H T P
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+ TG KPF C C F L +H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKH 31
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 61.4 bits (150), Expect = 3e-14
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRK-HTGYKPFSC 85
TG+KP++C+ CGKAF Q+++LI H R HTG KP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 49.1 bits (118), Expect = 2e-09
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-YIHTGEKPHKC 57
+ + +PY C CGK F Q + + +H Y HTGEKP
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 36.8 bits (86), Expect = 9e-05
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG 108
+ TG KP+ C C KAF + L RH H G
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTG 38
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 62.7 bits (152), Expect = 4e-14
Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 20 IHSDTRPYPCQYCGKRFHQKSDMKKH-TYIHTGEKPHK--------CVVCGKAFSQSSNL 70
I P + C + F ++ H T H G C GK+F L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 71 ITHLRKHTGYKPFSC 85
+ H+R HTG K
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 40.7 bits (95), Expect = 9e-06
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 48 IHTGEKPHKCVVCGKAFSQSSNLITHLRK-HTGYKPFS--------CGLCDKAFQRKVDL 98
I + C + FS L+TH+ H G + C K+F+ K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 99 RRH 101
H
Sbjct: 79 VNH 81
Score = 31.1 bits (70), Expect = 0.038
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C + GK+FK L H+ +H+ + P
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 30.3 bits (68), Expect = 0.061
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 77 HTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQHHI 116
CD+ F +L H +H G P Q +H+
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 59.1 bits (144), Expect = 2e-13
Identities = 16/41 (39%), Positives = 17/41 (41%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSC 85
+GEK H C CGK F S L H R H G K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 45.7 bits (109), Expect = 4e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
S + + C CGK F S ++ H +H GEK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 31.4 bits (72), Expect = 0.011
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F S L H +H +
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 29.9 bits (68), Expect = 0.033
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+G K +C C K F LR H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 58.4 bits (142), Expect = 4e-13
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
+G++ ++C CGK+F Q +L H R HTG P S
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 44.9 bits (107), Expect = 7e-08
Identities = 17/35 (48%), Positives = 18/35 (51%)
Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPH 55
S R Y CQ CGK F QK + H IHTG P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 35.2 bits (82), Expect = 3e-04
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPY 27
C++CGK+F++ +L+ H IH+ + P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 31.0 bits (71), Expect = 0.013
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 75 RKHTGYKPFSCGLCDKAFQRKVDLRRH 101
+G + + C C K+F++K L H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 58.5 bits (142), Expect = 4e-13
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 45 HTYIHTGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYKPFSC 85
TGEKP C CG FS+S L H R H+G KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 46.9 bits (112), Expect = 1e-08
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 16 THLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTYIHTGEKPHKC 57
+ + +P+ C + CG RF + ++ +H H+G KP
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 36.9 bits (86), Expect = 1e-04
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 72 THLRKHTGYKPFSCG--LCDKAFQRKVDLRRHR 102
+ TG KPF+C C F R +L RHR
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHR 34
Score = 32.7 bits (75), Expect = 0.004
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 4 CGKTFKRSSTLSTHLLIHSDTRPYPCQ 30
CG F RS LS H HS +P
Sbjct: 20 CGWRFSRSDELSRHRRSHSGVKPSGPS 46
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 57.8 bits (139), Expect = 1e-12
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
Y C+ CG R + S +KKH HT +P+ C C +F NL H++ K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 52.8 bits (126), Expect = 1e-10
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
C++CG K+ S L H+ H+D RPY C YC F K ++ KH K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 44.7 bits (105), Expect = 1e-07
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 55 HKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQ 105
+ C CG + S L H+R HT +P+ C C+ +F+ K +L +H +S+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 56.5 bits (137), Expect = 2e-12
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFS 84
+ GE P+ C CGK+F+Q +L H R + P S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 45.0 bits (107), Expect = 7e-08
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHK 56
PY C CGK F Q+ + H + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 34.2 bits (79), Expect = 8e-04
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPY 27
C QCGK+F + +L+ H S + P
Sbjct: 14 CGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 30.7 bits (70), Expect = 0.016
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
G P+ CG C K+F ++ L H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 58.6 bits (141), Expect = 2e-12
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 5/103 (4%)
Query: 10 RSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-----TYIHTGEKPHKCVVCGKAF 64
S+ + I + + C+ C + ++ H Y + +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 65 SQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHP 107
+ +L+ K K C C +F+ DL H
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 51.7 bits (123), Expect = 1e-09
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 1 CKQCGKTFKRSSTLSTHLLI-----HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPH 55
CK C + L+ H+ + +K + + +K
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL 81
Query: 56 KCVVCGKAFSQSSNLITHLRKHTGYK 81
KC+ CG +F +L H+ K Y+
Sbjct: 82 KCMYCGHSFESLQDLSVHMIKTKHYQ 107
Score = 46.3 bits (109), Expect = 1e-07
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 5/78 (6%)
Query: 38 QKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLR-----KHTGYKPFSCGLCDKAF 92
S K + I TG +C C A+ L H+ + ++ + +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 93 QRKVDLRRHRESQHPGSP 110
RK L +
Sbjct: 63 PRKRSLLEMEGKEDAQKV 80
Score = 37.8 bits (87), Expect = 2e-04
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 65 SQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH-RESQHPGSPAQQ 113
S S+ + TG F C C A+ V+L H E+ H +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHE 51
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 55.3 bits (134), Expect = 6e-12
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
T K + C CGKAF++ +L H + HT S G
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG 44
Score = 39.5 bits (93), Expect = 1e-05
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
+D++ Y C CGK F + + +H IHT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 35.2 bits (82), Expect = 4e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
T K ++C C KAF R L RH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 32.2 bits (74), Expect = 0.005
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPC 29
C +CGK F R L+ H IH+
Sbjct: 15 CNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 53.5 bits (129), Expect = 3e-11
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
+GEKP+ C C + FS ++ L+ H + HT S G
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG 42
Score = 39.2 bits (92), Expect = 9e-06
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKC 57
S +PY C C + F + + +H +HT +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 30.4 bits (69), Expect = 0.026
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 77 HTGYKPFSCGLCDKAFQRKVDLRRHR 102
+G KP+SC C + F L +H+
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQ 30
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 53.1 bits (127), Expect = 1e-10
Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 7/74 (9%)
Query: 10 RSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSN 69
S + IH R C CG F ++S + K C C K Q +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAA 54
Query: 70 LITHLRKHTGYKPF 83
L +G K
Sbjct: 55 LNKDEGNESGKKTS 68
Score = 48.5 bits (115), Expect = 6e-09
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 40 SDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLR 99
K IH G++ KC CG F + S + K C C K ++ L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALN 56
Query: 100 RHRESQ 105
+ ++
Sbjct: 57 KDEGNE 62
Score = 44.3 bits (104), Expect = 2e-07
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPH 55
C +CG F R STLS + C+ C K Q++ + K +G+K
Sbjct: 21 CSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 31.9 bits (72), Expect = 0.012
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 67 SSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQ 105
S + + H G + C C F R+ L R +
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTPM 41
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 47.2 bits (112), Expect = 1e-08
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLC 88
K C +CGK F +L H H+G KP+S G
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 42.6 bits (100), Expect = 6e-07
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
+ C+ CGK F + +H H+GEKP+
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 35.3 bits (81), Expect = 3e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYC 32
C+ CGK F+ L+ H L HS +PY
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 28.0 bits (62), Expect = 0.22
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 75 RKHTGYKPFSCGLCDKAFQRKVDLRRHRES 104
K +C +C K F+ L RH+ S
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS 34
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 45.6 bits (108), Expect = 5e-08
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
GE P KC C + F+Q + L+ H R H S G
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG 44
Score = 35.2 bits (81), Expect = 4e-04
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 16 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPH 55
+ + P+ C C + F Q++ + +H H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 31.4 bits (71), Expect = 0.010
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 72 THLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
+ G PF C CD+ F ++ L +H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHE 32
Score = 25.6 bits (56), Expect = 1.5
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRP 26
C +C + F + + L H H+
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHARKSG 40
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 45.0 bits (107), Expect = 6e-08
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 45 HTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKH 77
T TG KP +C C ++FS+S +L H ++H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 39.2 bits (92), Expect = 9e-06
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 73 HLRKHTGYKPFSCGLCDKAFQRKVDLRRHR 102
R TG KPF C CD++F R L HR
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
Score = 28.8 bits (65), Expect = 0.081
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIH 49
+ +P+ C C + F + + H H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.1 bits (58), Expect = 0.68
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 1 CKQCGKTFKRSSTLSTHLLIH 21
C C ++F RS L+ H H
Sbjct: 14 CPDCDRSFSRSDHLALHRKRH 34
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 46.5 bits (109), Expect = 1e-07
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 3/108 (2%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVC 60
+ KR L+ + + + S + + C +C
Sbjct: 22 IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRL-LASKAISQFVCPLC 80
Query: 61 GKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG 108
FS S +L H+R C +C K F H +H
Sbjct: 81 LMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 33.0 bits (74), Expect = 0.009
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 4/83 (4%)
Query: 28 PCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV----CGKAFSQSSNLITHLRKHTGYKPF 83
+ + + H ++ + +V S+ + L F
Sbjct: 16 NHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQF 75
Query: 84 SCGLCDKAFQRKVDLRRHRESQH 106
C LC F V L++H
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTE 98
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 44.1 bits (103), Expect = 6e-07
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 23 DTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHTGYKP 82
+ Y C+ C + + H + C C F H K YK
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCE-YKK 69
Query: 83 FSCGLCDKAFQRKVDLRRHRESQH 106
+C C + F+ + RH+ H
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVH 93
Score = 27.9 bits (61), Expect = 0.64
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 45
C C F H + + C C + F + +H
Sbjct: 45 CPYCSLRFFSPELKQEHE-SKCEYKKLTCLECMRTFKSSFSIWRH 88
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 42.5 bits (99), Expect = 1e-05
Identities = 6/54 (11%), Positives = 13/54 (24%)
Query: 24 TRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKH 77
+ + + ++C VC +L H+ H
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 35.2 bits (80), Expect = 0.003
Identities = 8/74 (10%), Positives = 17/74 (22%), Gaps = 9/74 (12%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQ 112
S+ + + + C +C +DL H
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHV---------A 201
Query: 113 QHHISSTSMIETPE 126
H + + + E
Sbjct: 202 SHGLHGNMTLTSSE 215
Score = 34.1 bits (77), Expect = 0.010
Identities = 7/49 (14%), Positives = 10/49 (20%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIH 49
+ + S Y C C D+ H H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 34.1 bits (77), Expect = 0.010
Identities = 5/24 (20%), Positives = 6/24 (25%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDT 24
C C L H+ H
Sbjct: 183 CHVCSAVLFSPLDLDAHVASHGLH 206
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 37.8 bits (87), Expect = 3e-05
Identities = 19/29 (65%), Positives = 26/29 (89%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
KP +CV+CGKAF+Q+S+LI H+R+HTG K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 26.3 bits (57), Expect = 0.55
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+P C CGK F Q S + H HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 36.0 bits (84), Expect = 1e-04
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 53 KPHKCVV--CGKAFSQSSNLITHLRKHTGYK 81
+P C CGK F++S L H R HTG K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 34.1 bits (79), Expect = 7e-04
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHTGEK 53
RP+ C + CGKRF + ++++H HTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 24.5 bits (54), Expect = 2.7
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 81 KPFSCG--LCDKAFQRKVDLRRHR 102
+PF C C K F R +L+RH+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHK 24
Score = 23.7 bits (52), Expect = 4.3
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 4 CGKTFKRSSTLSTHLLIHS 22
CGK F RS L H H+
Sbjct: 10 CGKRFTRSDELQRHKRTHT 28
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 35.0 bits (81), Expect = 3e-04
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 50 TGEKPHKCVV--CGKAFSQSSNLITHLRKHTGYK 81
+K H C + CGK + ++S+L HLR HTG +
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 28.9 bits (65), Expect = 0.077
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHTGEK 53
+ + C CGK + + S ++ H HTGE+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 23.5 bits (51), Expect = 6.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 4 CGKTFKRSSTLSTHLLIHSDTR 25
CGK + ++S L HL H+ R
Sbjct: 16 CGKVYGKTSHLRAHLRWHTGER 37
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 33.4 bits (77), Expect = 0.001
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
R + C+ C + F ++ +K+H HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 33.1 bits (76), Expect = 0.002
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
+ C VC +AF++ +L H R HT K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 27.3 bits (61), Expect = 0.26
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 81 KPFSCGLCDKAFQRKVDLRRH 101
+ F C +C +AF R+ L+RH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH 21
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 32.4 bits (73), Expect = 0.004
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+PY C +C ++F +++H IHTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.5 bits (68), Expect = 0.018
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
KP+ C+ C + F+ L H+R HTG K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 31.7 bits (72), Expect = 0.005
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHRESQHPGS 109
K ++CGLC++AF R+ L RH + H G+
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN 29
Score = 24.8 bits (54), Expect = 2.2
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRK-HTG 79
K + C +C +AF++ LI H +K H+G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 33.6 bits (76), Expect = 0.011
Identities = 10/54 (18%), Positives = 17/54 (31%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKHT 78
R + + KR H S H + GEK + + +L +
Sbjct: 179 RVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
Score = 32.5 bits (73), Expect = 0.030
Identities = 4/53 (7%), Positives = 15/53 (28%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
+ K S + H + + + + D++ ++ +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 28.6 bits (63), Expect = 0.63
Identities = 7/35 (20%), Positives = 9/35 (25%)
Query: 67 SSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRH 101
S H G K ++ DLR
Sbjct: 193 MSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.3 bits (70), Expect = 0.011
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
+ EK H+C CG+ F Q +LI H H G K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 30.2 bits (67), Expect = 0.032
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 22 SDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHK 56
S + + C+ CG+ F Q + +H +H G+K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSG 42
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 30.5 bits (68), Expect = 0.018
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHT 78
+G++P C +C AF+ +N HL+ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 27.0 bits (59), Expect = 0.40
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHT 50
S RP+ C+ C F K++ +H +HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 25.9 bits (56), Expect = 0.99
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 77 HTGYKPFSCGLCDKAFQRKVDLRRH 101
+G +PF C +C AF K + RH
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARH 26
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.2 bits (67), Expect = 0.022
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 50 TGEKPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
+ KP+KC C A + +NL HLRKHTG K
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.2 bits (54), Expect = 1.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 22 SDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
S +PY C C K+++ H HTGEK
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 30.7 bits (68), Expect = 0.023
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 21 HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTG 51
S +PY C CG RF +K M H H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 29.1 bits (64), Expect = 0.066
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHTG 79
+GEKP+ C VCG F + + H+R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 26.8 bits (58), Expect = 0.46
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 77 HTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG 108
+G KP+SC +C F+RK + H S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 31.7 bits (71), Expect = 0.025
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 17 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYI-HTG---EKPHKCVVCGKAFSQSSNLIT 72
+ Y C+YC + + H H + CV C + L
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 73 H-LRKHTGYKPFSCGL 87
H L+ H G + F +
Sbjct: 69 HNLKYHPGEENFKLTM 84
Score = 30.5 bits (68), Expect = 0.055
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 44 KHTYIHTGEKPHKCVVCGKAFSQSSNLITHLR-KHTGYK---PFSCGLCDKAFQRKVDLR 99
+ E ++C C + H+ +H + C C+ +R L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 100 RHRESQHPGSP 110
H HPG
Sbjct: 68 EHNLKYHPGEE 78
Score = 27.0 bits (59), Expect = 1.0
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 67 SSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRESQHPG 108
+ + + + C C H +S+HP
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPN 44
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 31.0 bits (69), Expect = 0.026
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 83 FSCGLCDKAFQRKVDLRRHRESQHPGSPAQQHHIS 117
CGLC K F LR+H E+QH + Q +I
Sbjct: 14 LPCGLCGKVFTDANRLRQH-EAQHGVTSLQLGYID 47
Score = 24.4 bits (52), Expect = 5.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 27 YPCQYCGKRFHQKSDMKKHTYIH 49
PC CGK F + +++H H
Sbjct: 14 LPCGLCGKVFTDANRLRQHEAQH 36
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 29.4 bits (65), Expect = 0.051
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIHTG 51
RPY C CGKRF K M+ H +HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 27.5 bits (60), Expect = 0.26
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTG 79
+P+ C VCGK FS + TH R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 31.6 bits (71), Expect = 0.051
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 13/35 (37%)
Query: 27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCG 61
+ C CG YIH GE KC +C
Sbjct: 172 HLCPICG-------------YIHKGEDFEKCPICF 193
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 30.7 bits (69), Expect = 0.12
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 20/57 (35%)
Query: 26 PYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAF------SQSSNLITHLRK 76
+ C YCG IH C K F + S+++ HL +
Sbjct: 6 IHACSYCG--------------IHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVR 48
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 28.3 bits (62), Expect = 0.13
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 26 PYPCQYCGKRFHQKSDMKKHTYIHTGE 52
CQ CGK F S + +H +H GE
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAGE 38
Score = 27.2 bits (59), Expect = 0.40
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 51 GEKPHKCVVCGKAFSQSSNLITHLRKHTGYKPFSCG 86
+ +C CGK F SS LI H H G S G
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG 44
Score = 26.0 bits (56), Expect = 0.90
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHS 22
C++CGK F+ SS L H +H+
Sbjct: 15 CQECGKIFRHSSLLIEHQALHA 36
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 0.15
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 22 SDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEK 53
S + + C+YC K F K ++ H IHT EK
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 23.3 bits (49), Expect = 8.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTR 25
C+ C K FK +L HL IH++ +
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNEK 36
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (61), Expect = 0.22
Identities = 14/30 (46%), Positives = 14/30 (46%)
Query: 49 HTGEKPHKCVVCGKAFSQSSNLITHLRKHT 78
EK KC C K FS S L H R HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.5 bits (61), Expect = 0.25
Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHTGEK 53
+ + C + C K F ++ +++ H H ++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 25.6 bits (56), Expect = 1.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 2 KQCGKTFKRSSTLSTHLLIHSDTR 25
C KTFKR + +H+ H + R
Sbjct: 24 PGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 25.2 bits (55), Expect = 2.1
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 49 HTGEKPHKCVVC-----GKAFSQSSNLITHLRKHTGYK 81
+ E P K C K F + N+ +H++ H +
Sbjct: 10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress,
oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A
3pza_A 3qvd_A 1nnq_A 2hr5_A
Length = 170
Score = 29.3 bits (65), Expect = 0.31
Identities = 11/35 (31%), Positives = 11/35 (31%), Gaps = 13/35 (37%)
Query: 27 YPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCG 61
Y C CG Y E P C VCG
Sbjct: 139 YICPICG-------------YTAVDEAPEYCPVCG 160
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 27.0 bits (59), Expect = 0.32
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKH 77
KP+ C CGK F QSS L H+R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 25.4 bits (55), Expect = 1.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 25 RPYPCQYCGKRFHQKSDMKKHTYIH 49
+PY C+ CGKRF Q S + H H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.4 bits (62), Expect = 0.35
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 57 CVVCGKAFSQS-SNLITHLRK-HTGYKPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQH 114
C C ++ L H+ C C K F+ K L H ++H P+
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAE 86
Score = 28.0 bits (61), Expect = 0.51
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 1 CKQCGKTFKRSST-LSTHLLI-HSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
C C +++ L H+ + CQ+C K+F K+ + HT KP
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 27.2 bits (60), Expect = 0.60
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 45
+C R L HL R C++CG F + H
Sbjct: 20 PNRCPMKLSRRD-LPAHLQHDCPKRRLKCEFCGCDF-SGEAYESH 62
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.5 bits (60), Expect = 0.73
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKP 54
C C +++ + + + C +CGK+ + MK H + P
Sbjct: 37 CPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 24.4 bits (52), Expect = 9.8
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKH---TGYKPFSCGLCDKAFQRKVDLRRHRESQHPGS 109
V C + I L+KH + F+C C K + ++ H + H
Sbjct: 30 VDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
Query: 110 P 110
P
Sbjct: 90 P 90
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 28.6 bits (63), Expect = 0.76
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLR 75
+ C VC FS S L HLR
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLR 137
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.5 bits (58), Expect = 1.1
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 11 SSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGK 62
SS S H R CQ+C +K+H + G + C CG+
Sbjct: 2 SSGSSGHEETECPLRLAVCQHCDLELSI-LKLKEHED-YCGARTELCGNCGR 51
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 27.4 bits (60), Expect = 1.2
Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 3/105 (2%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHS-DTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVV 59
C + + + + C G + + H C
Sbjct: 56 CPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQ 115
Query: 60 CGKAFSQSSNLITHLRKHTGYKPFSCGLCDKAFQRKVDLRRHRES 104
C + F + ++ H+ K + SC C + + D H ++
Sbjct: 116 CQRPFQKF-HINIHILKDCPRRQVSCDNCAASMAFE-DKEIHDQN 158
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 25.0 bits (54), Expect = 1.7
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 81 KPFSCGL--CDKAFQRKVDLRRHRES 104
+P+SC CDKAF R DL RH++S
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKS 27
Score = 25.0 bits (54), Expect = 2.1
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 25 RPYPCQY--CGKRFHQKSDMKKHTYIHT 50
RPY C + C K F + D+ +H H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 24.9 bits (53), Expect = 2.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHRESQHPGSPA 111
+P +C +C ++ +LRRH E +H P
Sbjct: 23 QPATCPICYAVIRQSRNLRRHLELRHFAKPG 53
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.4 bits (52), Expect = 3.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSD 23
C CGK FK TL +H L+H+
Sbjct: 12 CDMCGKKFKSKGTLKSHKLLHTA 34
Score = 24.4 bits (52), Expect = 3.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 22 SDTRPYPCQYCGKRFHQKSDMKKHTYIHTGE 52
S + + C CGK+F K +K H +HT +
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.1 bits (52), Expect = 3.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTR 25
C +C K F RS L+ H+L+H + +
Sbjct: 5 CPECPKRFMRSDHLTLHILLHENKK 29
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural
genomics, PSI-2, protein structure initiative; 2.60A
{Geobacter metallireducens gs-15}
Length = 112
Score = 25.1 bits (55), Expect = 5.2
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 27 YPCQYCGKRFHQK 39
C YCG+ F +
Sbjct: 36 GICHYCGEIFPPE 48
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 26.0 bits (56), Expect = 5.2
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 29 CQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLRKH 77
C +C + F S + H G+ K + F S + K+
Sbjct: 295 CPFCSRWFKTSSVFESHL---VGKIHKKNESKRRNFVYSEYKLHRYLKY 340
Score = 25.2 bits (54), Expect = 7.9
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 52 EKPHKCVVCGKAFSQSSNLITHL--RKH 77
K C C + F SS +HL + H
Sbjct: 290 AKGIYCPFCSRWFKTSSVFESHLVGKIH 317
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 25.0 bits (54), Expect = 6.3
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 20 IHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCVVCGKAFSQSSNLITHLR 75
IH + RP + + D G H+C+ C + F S+NL TH R
Sbjct: 21 IHRELRPQGSARPQPDPNAEFDPDL-----PGGGLHRCLACARYFIDSTNLKTHFR 71
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.7 bits (50), Expect = 6.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 53 KPHKCVVCGKAFSQSSNLITHLRKHTGYK 81
KP KC +C A SNL H+ +H+ K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 23.6 bits (50), Expect = 7.1
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 81 KPFSCGLCDKAFQRKVDLRRHRESQHPGSPAQQ 113
KP++C +C K ++ + L H H +
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHLAEEEGE 38
Score = 23.6 bits (50), Expect = 7.8
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 23 DTRPYPCQYCGKRFHQKSDMKKHTYIHT 50
+PY C CGKR+ + + H Y H+
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYH-YAHS 30
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 23.3 bits (50), Expect = 7.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 1 CKQCGKTFKRSSTLSTHLLIHSDTRP 26
C +C K F RS LS H+ +H
Sbjct: 5 CPECPKRFMRSDHLSKHITLHELLGE 30
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 22.8 bits (48), Expect = 9.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 83 FSCGLCDKAFQRKVDLRRHR 102
+ CGLC+++F K L RH+
Sbjct: 2 YKCGLCERSFVEKSALSRHQ 21
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.130 0.418
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,905,188
Number of extensions: 95612
Number of successful extensions: 1265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1028
Number of HSP's successfully gapped: 701
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)