BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2644
         (119 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OSE|A Chain A, Structure Of The Kinase Associated Domain 1 (Ka1) From
           Mark1 Kinase
          Length = 120

 Score =  189 bits (479), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 89/100 (89%), Positives = 93/100 (93%)

Query: 20  KPRSLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 79
           KPRSLRFTWSMKTTSS DPN++M EIRKVLDANNCDYEQ+ERFLL CVHGD   DSLVQW
Sbjct: 21  KPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQW 80

Query: 80  EIEVCKLPRLSLNGVRFKRISGTSIGFKNIASKIANELKL 119
           E+EVCKLPRLSLNGVRFKRISGTSI FKNIASKIANELKL
Sbjct: 81  EMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELKL 120


>pdb|1UL7|A Chain A, Solution Structure Of Kinase Associated Domain 1 Of Mouse
           MapMICROTUBULE AFFINITY-Regulating Kinase 3
          Length = 102

 Score =  174 bits (441), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/97 (84%), Positives = 89/97 (91%)

Query: 23  SLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIE 82
           S RFTWSMKTTSS DP+++M EIRKVL ANNCDYEQRERFLL CVHGD + ++LVQWE+E
Sbjct: 6   SGRFTWSMKTTSSMDPSDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEME 65

Query: 83  VCKLPRLSLNGVRFKRISGTSIGFKNIASKIANELKL 119
           VCKLPRLSLNGVRFKRISGTSI FKNIASKIANELKL
Sbjct: 66  VCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELKL 102


>pdb|1V5S|A Chain A, Solution Structure Of Kinase Associated Domain 1 Of Mouse
           MapMICROTUBULE AFFINITY-Regulating Kinase 3
          Length = 126

 Score =  150 bits (379), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 85/109 (77%), Gaps = 3/109 (2%)

Query: 11  SNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGD 70
           ++A N D   P +    +   + SS D   +M EIRKVL ANNCDYEQRERFLL CVHGD
Sbjct: 15  AHAHNKDYDIPTTENLYFQGSSGSSGD---MMREIRKVLGANNCDYEQRERFLLFCVHGD 71

Query: 71  PNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTSIGFKNIASKIANELKL 119
            + ++LVQWE+EVCKLPRLSLNGVRFKRISGTSI FKNIASKIANELKL
Sbjct: 72  GHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELKL 120


>pdb|2QAC|A Chain A, The Closed Mtip-myosina-tail Complex From The Malaria
          Parasite Invasion Machinery
 pdb|4AOM|A Chain A, Mtip And Myoa Complex
          Length = 146

 Score = 28.5 bits (62), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 38 PNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQ 78
          P+ I  +  K L  +N  YEQ   +L +CVH   N + L++
Sbjct: 48 PSSIDEKKIKELYGDNLTYEQYLEYLSICVHDKDNVEELIK 88


>pdb|3IAR|A Chain A, The Crystal Structure Of Human Adenosine Deaminase
          Length = 367

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 38  PNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCK 85
           P+E++A + + L     D+  + R +L C+   PN    V   +E+CK
Sbjct: 123 PDEVVALVGQGLQEGERDFGVKARSILCCMRHQPNWSPKV---VELCK 167


>pdb|3TX7|B Chain B, Crystal Structure Of Lrh-1BETA-Catenin Complex
          Length = 352

 Score = 25.4 bits (54), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 37  DPNEIMAEIRKVLD---ANNCDYEQRERFLLLCVHGDPNTDSLVQW 79
           D  ++ A+I   L    AN   +E+   F L+C   D    S+V+W
Sbjct: 125 DEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEW 170


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,406,985
Number of Sequences: 62578
Number of extensions: 117697
Number of successful extensions: 276
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 15
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)