Query psy2644
Match_columns 119
No_of_seqs 104 out of 264
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 21:30:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ose_A Serine/threonine-protei 100.0 2.7E-42 9.3E-47 241.1 10.8 107 13-119 14-120 (120)
2 1v5s_A MAP/microtubule affinit 100.0 1.6E-39 5.4E-44 228.9 11.0 111 6-119 6-120 (126)
3 4eai_A 5'-AMP-activated protei 99.9 4.7E-22 1.6E-26 136.0 10.6 93 25-118 5-105 (106)
4 2v8q_A 5'-AMP-activated protei 99.8 1.3E-18 4.4E-23 125.7 11.9 78 25-103 2-79 (157)
5 2y8l_A 5'-AMP-activated protei 99.8 3.3E-18 1.1E-22 125.1 12.0 80 23-103 14-93 (173)
6 2qrd_A SNF1-like protein kinas 99.8 4.3E-19 1.5E-23 126.2 6.4 95 23-118 8-135 (137)
7 4eag_A EG:132E8.2 protein; AMP 99.8 5E-18 1.7E-22 119.3 11.0 92 25-117 5-128 (130)
8 3t4n_A Carbon catabolite-derep 99.7 6E-17 2.1E-21 119.2 10.2 95 22-118 45-173 (179)
9 2y94_A 5'-AMP-activated protei 99.5 6.4E-14 2.2E-18 114.9 9.2 82 24-106 394-475 (476)
10 2ehb_D CBL-interacting serine/ 98.7 1.2E-07 4.2E-12 67.3 10.1 86 31-118 37-122 (143)
11 2zfd_B Putative uncharacterize 98.3 5.8E-07 2E-11 62.3 5.2 82 31-117 35-117 (123)
12 3ost_A Serine/threonine-protei 96.0 0.027 9.1E-07 39.1 6.9 79 27-114 24-117 (128)
13 1q9u_A Uncharacterized protein 59.6 10 0.00034 25.0 3.7 31 26-56 3-33 (130)
14 1j3m_A The conserved hypotheti 58.8 9.8 0.00033 25.1 3.5 29 28-56 2-30 (129)
15 3ost_A Serine/threonine-protei 54.8 22 0.00074 24.4 4.7 51 5-55 61-126 (128)
16 3isz_A Succinyl-diaminopimelat 51.8 46 0.0016 24.8 6.7 48 11-58 238-285 (377)
17 2ojw_A Glutamine synthetase; a 49.4 28 0.00094 27.6 5.2 63 38-119 191-253 (384)
18 3fky_A Glutamine synthetase; b 49.2 21 0.00072 28.1 4.5 63 38-119 169-231 (370)
19 1vgy_A Succinyl-diaminopimelat 44.7 47 0.0016 25.3 5.8 48 10-57 240-287 (393)
20 3gr0_A Protein PRGH; type III 44.3 89 0.003 22.7 7.2 24 35-58 128-151 (197)
21 2d3a_A Glutamine synthetase; l 43.3 24 0.00084 27.6 4.0 62 38-118 168-229 (356)
22 3umf_A Adenylate kinase; rossm 37.6 30 0.001 25.0 3.5 23 33-55 195-217 (217)
23 4grd_A N5-CAIR mutase, phospho 36.3 47 0.0016 23.8 4.2 23 35-57 21-43 (173)
24 3zxw_B Ribulose bisphosphate c 32.5 56 0.0019 21.9 3.9 30 27-56 55-84 (118)
25 3ng0_A Glutamine synthetase; G 32.3 43 0.0015 27.2 3.9 65 37-119 190-254 (473)
26 4hpp_A Probable glutamine synt 32.3 37 0.0013 27.4 3.5 63 38-119 156-218 (443)
27 2y9j_Y Lipoprotein PRGK, prote 31.0 50 0.0017 23.1 3.7 31 36-67 7-41 (170)
28 1gk8_I Ribulose bisphosphate c 30.2 40 0.0014 23.3 2.9 30 27-56 75-104 (140)
29 1gng_X Frattide, glycogen synt 28.7 34 0.0011 18.6 1.8 15 33-47 7-21 (39)
30 2hl0_A Threonyl-tRNA synthetas 26.3 98 0.0034 21.4 4.4 30 38-67 94-128 (143)
31 3gr1_A Protein PRGH; type III 26.1 1.7E+02 0.0059 21.6 6.0 49 35-84 128-197 (227)
32 4acf_A Glutamine synthetase 1; 24.9 77 0.0026 25.7 4.2 69 33-119 198-266 (486)
33 1svd_M Ribulose bisphosphate c 24.8 98 0.0033 20.4 4.0 30 27-56 58-87 (110)
34 1m7g_A Adenylylsulfate kinase; 23.9 61 0.0021 22.3 3.0 22 34-55 185-206 (211)
35 1u6t_A SH3 domain-binding glut 23.9 91 0.0031 20.6 3.8 29 31-59 5-36 (121)
36 3uie_A Adenylyl-sulfate kinase 23.7 52 0.0018 22.4 2.6 25 29-54 172-197 (200)
37 3tx8_A Succinyl-diaminopimelat 23.0 92 0.0031 23.3 4.1 40 18-57 243-285 (369)
38 1ygt_A Cytoplasmic dynein ligh 22.5 1.2E+02 0.0042 19.3 4.2 25 39-67 42-66 (111)
39 1rbl_M Ribulose 1,5 bisphospha 22.4 98 0.0034 20.4 3.6 29 28-56 57-85 (109)
40 1dzk_A PIG OBP, odorant-bindin 22.4 1.3E+02 0.0044 19.5 4.4 34 23-57 111-144 (157)
41 2pez_A Bifunctional 3'-phospho 22.3 66 0.0023 21.3 2.9 22 33-54 157-178 (179)
42 1bj7_A D 2; allergen, lipocali 22.0 1.1E+02 0.0037 19.9 3.9 35 22-57 109-143 (156)
43 2hlv_A Odorant-binding protein 21.5 1.4E+02 0.0048 19.4 4.4 34 23-57 112-145 (160)
44 1whz_A Hypothetical protein; a 21.1 71 0.0024 18.5 2.5 21 42-62 7-28 (70)
45 3t61_A Gluconokinase; PSI-biol 21.0 37 0.0013 23.1 1.4 23 35-57 163-185 (202)
46 2f7v_A Aectylcitrulline deacet 21.0 93 0.0032 23.4 3.8 46 10-56 231-276 (369)
47 3hts_B Heat shock transcriptio 20.9 7.5 0.00026 25.5 -2.2 25 36-60 10-38 (102)
48 3iz6_J 40S ribosomal protein S 20.8 1.6E+02 0.0054 19.8 4.5 66 20-85 23-95 (128)
49 3v85_A CYTH-like phosphatase; 20.6 98 0.0034 21.6 3.6 24 35-58 172-195 (210)
50 1wdd_S Ribulose bisphosphate c 20.2 1.3E+02 0.0045 20.4 4.0 31 26-56 67-97 (128)
51 3qaj_A Glutamine synthetase; A 20.1 56 0.0019 26.3 2.4 63 37-118 164-226 (444)
No 1
>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.70A {Homo sapiens} SCOP: d.129.6.1 PDB: 1ul7_A
Probab=100.00 E-value=2.7e-42 Score=241.13 Aligned_cols=107 Identities=83% Similarity=1.282 Sum_probs=97.6
Q ss_pred CCCCCCCCCeEeceeeeeeeecCCCHHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCCCCCcceEEEEEEEeecCCCcc
Q psy2644 13 AVNDDQVKPRSLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLN 92 (119)
Q Consensus 13 ~~~~~~~kpR~lk~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~~~~~~v~fEiEVcrl~~l~l~ 92 (119)
...+++++||++||.|+++|||+++|++||+||++||+++||+|+++|+|+|+|.+.++.++..++||+|||+||++++|
T Consensus 14 ~~~~~~~kPR~lk~~~~v~tTS~~~P~eIm~eI~rvL~~~gi~~~~~g~y~l~C~~~~~~~~~~v~fElEVckl~~~~l~ 93 (120)
T 3ose_A 14 KEEGKDSKPRSLRFTWSMKTTSSMDPNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQWEMEVCKLPRLSLN 93 (120)
T ss_dssp -------CCCBCCCCTTCCCEECSCHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCTTTTCCEEEEEEEEEEGGGTEE
T ss_pred ccccCCCCCcEEeceeeecCcccCCHHHHHHHHHHHHHHCCCEEEEcCCEEEEEEecCCCCCccEEEEEEEEEecCCCce
Confidence 36788999999999999999999999999999999999999999999999999999987777899999999999999999
Q ss_pred eeeEEEecCCchhHHHHHHHHHHhcCC
Q psy2644 93 GVRFKRISGTSIGFKNIASKIANELKL 119 (119)
Q Consensus 93 gi~fkRl~Gd~~~Yk~lc~~il~~l~L 119 (119)
||+|||++||+|.|++||++|+++|+|
T Consensus 94 gV~~kRi~Gd~~~yk~lc~~il~~L~L 120 (120)
T 3ose_A 94 GVRFKRISGTSIAFKNIASKIANELKL 120 (120)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHCCC
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999997
No 2
>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1
Probab=100.00 E-value=1.6e-39 Score=228.87 Aligned_cols=111 Identities=69% Similarity=1.049 Sum_probs=102.0
Q ss_pred cceeee----CCCCCCCCCCeEeceeeeeeeecCCCHHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCCCCCcceEEEE
Q psy2644 6 KHNVVS----NAVNDDQVKPRSLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEI 81 (119)
Q Consensus 6 ~~~~~~----~~~~~~~~kpR~lk~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~~~~~~v~fEi 81 (119)
-|||-+ -+-..+.++||++++.| |||+++|++||.||+|||+++||+|+++|+|.|+|+|.++.++..|+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~pr~lk~~f---tTSsk~P~eIm~EI~rvL~~~~i~~k~~~~y~L~C~~~~~~~~~~vkfEi 82 (126)
T 1v5s_A 6 IHNVHKEEHAHAHNKDYDIPTTENLYF---QGSSGSSGDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEM 82 (126)
T ss_dssp CCCCCCCCCCCCCCCCCCCCSSSEECC---CCCCSSHHHHHHHHHHHHHHTTEEEEEEETTEEEEEECSSSTTTCEEEEE
T ss_pred hhhhhhhhhhcccCCCcccCcEEeEEE---eecCCCHHHHHHHHHHHHHHcCCcEEEECCEEEEEEECCCCCCceEEEEE
Confidence 355554 22567889999999999 99999999999999999999999999989999999998877778999999
Q ss_pred EEEeecCCCcceeeEEEecCCchhHHHHHHHHHHhcCC
Q psy2644 82 EVCKLPRLSLNGVRFKRISGTSIGFKNIASKIANELKL 119 (119)
Q Consensus 82 EVcrl~~l~l~gi~fkRl~Gd~~~Yk~lc~~il~~l~L 119 (119)
||||+|++++||||||||+||+|.||++|++||++|+|
T Consensus 83 EVcKvp~l~l~GI~fKRisGd~w~YK~lc~~IL~eLkL 120 (126)
T 1v5s_A 83 EVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELKL 120 (126)
T ss_dssp ECCCCTTTCSCCCEEEEEESCHHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCCceeEEEeeccCchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999986
No 3
>4eai_A 5'-AMP-activated protein kinase catalytic subunit linker, 5'-AMP-activated protein...; AMPK, transferase; HET: AMP; 2.29A {Rattus norvegicus} PDB: 4eaj_A* 4eak_A* 4eal_A*
Probab=99.87 E-value=4.7e-22 Score=136.00 Aligned_cols=93 Identities=17% Similarity=0.375 Sum_probs=85.5
Q ss_pred ceeeeeeeecCCCHHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCCCCCcceEEEEEEEeecCCCcceeeEEEecC---
Q psy2644 25 RFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISG--- 101 (119)
Q Consensus 25 k~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~~~~~~v~fEiEVcrl~~l~l~gi~fkRl~G--- 101 (119)
+..|.+++.|..+|.|||.||++||+++|++|+..|+|.++|++.++.....++||+++++++. ..|.+||||++|
T Consensus 5 ~~kW~LGIrS~~~P~eiM~eIyraLk~lg~~Wk~~~~Y~lkcR~~~~~~~~~vK~~lQLYkv~~-~~YLLDfq~i~g~~~ 83 (106)
T 4eai_A 5 GAKWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDS-RTYLLDFRSIDDGGG 83 (106)
T ss_dssp -CEEEESEEECSCHHHHHHHHHHHHHHHTCEEEEEETTEEEEEEECTTTCCEEEEEEEEEECSS-SCEEEEEEECCSSCC
T ss_pred CccceEcceeCCCHHHHHHHHHHHHHHcCCEEeeCCceEEEEEEcCCCCCceeEEEEEEEEecC-CcEEEEEEeccCCCC
Confidence 4689999999999999999999999999999999999999999887655678999999999985 589999999999
Q ss_pred -----CchhHHHHHHHHHHhcC
Q psy2644 102 -----TSIGFKNIASKIANELK 118 (119)
Q Consensus 102 -----d~~~Yk~lc~~il~~l~ 118 (119)
.++.|.++|+.++.+|.
T Consensus 84 ~~~~~~~~~F~d~ca~li~~la 105 (106)
T 4eai_A 84 GGGGSHTIEFFEMCANLIKILA 105 (106)
T ss_dssp CSSSCHHHHHHHHHHHHHHHCC
T ss_pred CCCCcCcEeHHHHHHHHHHHHh
Confidence 59999999999999874
No 4
>2v8q_A 5'-AMP-activated protein kinase catalytic subunit; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.129.6.2 PDB: 2v92_A* 2v9j_A* 2y94_C*
Probab=99.79 E-value=1.3e-18 Score=125.70 Aligned_cols=78 Identities=17% Similarity=0.386 Sum_probs=70.9
Q ss_pred ceeeeeeeecCCCHHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCCCCCcceEEEEEEEeecCCCcceeeEEEecCCc
Q psy2644 25 RFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTS 103 (119)
Q Consensus 25 k~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~~~~~~v~fEiEVcrl~~l~l~gi~fkRl~Gd~ 103 (119)
+..|.+++.|..+|.|||.||+|||+++|++|+..++|.++|++..+..+..++|+++++++.. +.|.||||++.|+.
T Consensus 2 ~~kWhLGIrSrs~P~eIM~EVyRALk~Lg~eWK~~~pY~IkcRw~~~~~~~~vKm~LQLYkv~~-~~YLLDFk~l~g~~ 79 (157)
T 2v8q_A 2 SMAWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDS-RTYLLDFRSIDDEI 79 (157)
T ss_dssp CCEEEESEEECSCHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEECTTTCCEEEEEEEEEECSS-SCEEEEEEEECCC-
T ss_pred CccceeecccCCCHHHHHHHHHHHHHHcCCEEeeCCCeEEEEEEcCCCCCceEEEEEEEEEecC-CCEEEEEEecCCCc
Confidence 3579999999999999999999999999999999999999999976555568999999999985 68999999999985
No 5
>2y8l_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, serine/threonine-protein KI; HET: ADP AMP; 2.50A {Rattus norvegicus} PDB: 2y8q_A* 2ya3_A*
Probab=99.77 E-value=3.3e-18 Score=125.08 Aligned_cols=80 Identities=16% Similarity=0.357 Sum_probs=71.7
Q ss_pred EeceeeeeeeecCCCHHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCCCCCcceEEEEEEEeecCCCcceeeEEEecCC
Q psy2644 23 SLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGT 102 (119)
Q Consensus 23 ~lk~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~~~~~~v~fEiEVcrl~~l~l~gi~fkRl~Gd 102 (119)
.-+..|.+++.|..+|.|||.||+|||+++|++|+..++|.++|++..+..+..++|+++++|+.. +.|.||||++.||
T Consensus 14 ~k~~kWhLGIrSrs~P~eIM~EVyRALk~Lg~eWK~i~pY~IkcRw~~~~~~~~vKmeLQLYKv~~-~~YLLDFk~l~Gd 92 (173)
T 2y8l_A 14 RGSMAWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDS-RTYLLDFRSIDDE 92 (173)
T ss_dssp --CCEEEESEEECSCHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEECTTTCCEEEEEEEEEECSS-SCEEEEEEEECCC
T ss_pred cccceeeeecccCCCHHHHHHHHHHHHHHcCCEEeeCCCeEEEEEEcCCCCCeeEEEEEEEEEEcC-CCEEEEEEecCCC
Confidence 346789999999999999999999999999999999999999999976555668999999999985 7899999999998
Q ss_pred c
Q psy2644 103 S 103 (119)
Q Consensus 103 ~ 103 (119)
.
T Consensus 93 ~ 93 (173)
T 2y8l_A 93 I 93 (173)
T ss_dssp -
T ss_pred c
Confidence 6
No 6
>2qrd_A SNF1-like protein kinase SSP2; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.129.6.2 PDB: 2ooy_A* 2qr1_A* 2qrc_A* 2oox_A* 2qre_A*
Probab=99.77 E-value=4.3e-19 Score=126.18 Aligned_cols=95 Identities=13% Similarity=0.213 Sum_probs=83.0
Q ss_pred EeceeeeeeeecCCCHHHHHHHHHHHHhhCCCceEEe---------CcEEEEeeeCCCCC-----CcceEEEEEEEeecC
Q psy2644 23 SLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQR---------ERFLLLCVHGDPNT-----DSLVQWEIEVCKLPR 88 (119)
Q Consensus 23 ~lk~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~~~~---------g~y~l~C~~~~~~~-----~~~v~fEiEVcrl~~ 88 (119)
.-+..|.+++.|..+|.|||.||+|||+++|++|+.. |+|.++|++..+.. +..++|+|+++++..
T Consensus 8 ~~~~kWhlGIRSrs~P~eIM~EVyrALk~Lg~eWk~~~~~~~~~~~~~y~Ik~R~~~~~~~~~~~~~~vkm~iQLYqv~~ 87 (137)
T 2qrd_A 8 SRRNKWHFGVRCRGDAPEILLAVYRALQRAGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKREGKNTYAYIELQLYEVMP 87 (137)
T ss_dssp ---CCCEESEEEESCHHHHHHHHHHHHHHHTCEECCCCCBTTBCCGGGGEEEEEEECHHHHHTTCCEEEEEEEEEEEEET
T ss_pred cccCccccccccCCCHHHHHHHHHHHHHHCCCEEEeccccccccCCCceEEEEEEecCCCccccCCceEEEEEEEEEecC
Confidence 3478899999999999999999999999999999998 99999999865321 357999999999984
Q ss_pred CCcceeeEEEecCC---------------c----hhHHHHHHHHHHhcC
Q psy2644 89 LSLNGVRFKRISGT---------------S----IGFKNIASKIANELK 118 (119)
Q Consensus 89 l~l~gi~fkRl~Gd---------------~----~~Yk~lc~~il~~l~ 118 (119)
+.|.||||++.|+ . +.|.++|+.++.+|.
T Consensus 88 -~~YLlDFk~~~~~~~~~~~~~~~~~~~~~~~s~~~Fldlca~Li~eLa 135 (137)
T 2qrd_A 88 -GCFMLDVKSNGYKDIYSHPERTADHGMDDLKSSFPFLDLCAMLVCKLF 135 (137)
T ss_dssp -TEEEEEEEEEEEEESCC-------------CCCTTHHHHHHHHHHHHH
T ss_pred -CcEEEEEEecCCccccccCccccccCCccccccccHHHHHHHHHHHHh
Confidence 7899999999999 6 999999999999874
No 7
>4eag_A EG:132E8.2 protein; AMPK, transferase; HET: ATP TAM; 2.70A {Drosophila melanogaster}
Probab=99.76 E-value=5e-18 Score=119.31 Aligned_cols=92 Identities=14% Similarity=0.318 Sum_probs=81.4
Q ss_pred ceeeeeeeecCCCHHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCCCCCcceEEEEEEEeecCCCcceeeEEEecCCc-
Q psy2644 25 RFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTS- 103 (119)
Q Consensus 25 k~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~~~~~~v~fEiEVcrl~~l~l~gi~fkRl~Gd~- 103 (119)
+..|.+++.|..+|.|||.||+|||+++|++|+..|+|.++|++.++..+..++|+++++++.. ..|.+|||++.||.
T Consensus 5 ~~kW~LGIrS~~~P~eIM~EVyrALk~Lg~eWK~~~pY~vkcR~~n~~~~~~vKm~LQLYqv~~-~~YLLDfk~~~~~~~ 83 (130)
T 4eag_A 5 GAKWHLGIRSQSKPNDIMLEVYRAMKALSYEWKIINPYHVRVRRQNVKTGKFSKMSLQLYQVDA-KSYLLDFKSLTNDEV 83 (130)
T ss_dssp -CCEEESBCCCSCHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEECTTTCCEEEEEEEEEESSS-SCEEEEEEECC----
T ss_pred ccceeeeeecCCCHHHHHHHHHHHHHHCCCEEeeCCCEEEEEEecCCCCCceeEEEEEEEEecC-CcEEEEeccCCcchh
Confidence 5689999999999999999999999999999999999999999877666678999999999986 68999999999983
Q ss_pred -------------------------------hhHHHHHHHHHHhc
Q psy2644 104 -------------------------------IGFKNIASKIANEL 117 (119)
Q Consensus 104 -------------------------------~~Yk~lc~~il~~l 117 (119)
+.|.++|+.++.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~tmeffemc~~li~~l 128 (130)
T 4eag_A 84 EQGDDVIMESLTPPPLSVSGVMPLQPTGHHTMEFFEMCAALIIQL 128 (130)
T ss_dssp -----------------------CCCSCCHHHHHHHHHHHHHHHH
T ss_pred hccCCccccccCCCcccccCCCCCCCCCcccChHHHHHHHHHHHH
Confidence 78999999998876
No 8
>3t4n_A Carbon catabolite-derepressing protein kinase; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} SCOP: d.129.6.2 PDB: 3tdh_A* 3te5_A* 2qlv_A
Probab=99.71 E-value=6e-17 Score=119.15 Aligned_cols=95 Identities=18% Similarity=0.283 Sum_probs=83.4
Q ss_pred eEeceeeeeeeecCCCHHHHHHHHHHHHhhCCCceEEeC---cEEEEeeeCCCC---------CCcceEEEEEEEeecCC
Q psy2644 22 RSLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRE---RFLLLCVHGDPN---------TDSLVQWEIEVCKLPRL 89 (119)
Q Consensus 22 R~lk~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~~~~g---~y~l~C~~~~~~---------~~~~v~fEiEVcrl~~l 89 (119)
+..+..|.+++.|..+|.|||.||+|||+.+|+.|+..| +|.++|+|..+. ..+.++||++++++..
T Consensus 45 ~~~~~kW~LGIrS~~~P~eIM~EVyrALk~Lg~~WKk~~~~~pY~IkcRw~~~~~~~~~~~~~~p~~vKmeLQLYkv~~- 123 (179)
T 3t4n_A 45 KKSKTRWHFGIRSRSYPLDVMGEIYIALKNLGAEWAKPSEEDLWTIKLRWKYDIGNKTNTNEKIPDLMKMVIQLFQIET- 123 (179)
T ss_dssp CCCCCCCEESEEECSCHHHHHHHHHHHHHHHTCEEECCCGGGTTEEEEEECC-----------CCCEEEEEEEEEEEET-
T ss_pred CcccceeeeccccCCCHHHHHHHHHHHHHHcCCEEeeCCCCCceEEEEEEeCCCCcccccccCCCceeEEEEEEEEecC-
Confidence 445678999999999999999999999999999999988 999999986432 1356999999999986
Q ss_pred CcceeeEEEecC----------------------CchhHHHHHHHHHHhcC
Q psy2644 90 SLNGVRFKRISG----------------------TSIGFKNIASKIANELK 118 (119)
Q Consensus 90 ~l~gi~fkRl~G----------------------d~~~Yk~lc~~il~~l~ 118 (119)
+.|.+||| ..| .++-|.++|++++.+|.
T Consensus 124 ~~YLLDfk-~~G~e~~~~~~~~~~~~~~~e~~~~s~~pFLdlca~LI~eLa 173 (179)
T 3t4n_A 124 NNYLVDFK-FDGWESSYGDDTTVSNISEDEMSTFSAYPFLHLTTKLIMELA 173 (179)
T ss_dssp TEEEEEEE-EEEEECC----------------CCCCHHHHHHHHHHHHHHH
T ss_pred CceEEEEE-eccccccccccccccccccccccccCCccHHHHHHHHHHHHH
Confidence 68999999 889 88999999999998873
No 9
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=99.50 E-value=6.4e-14 Score=114.88 Aligned_cols=82 Identities=16% Similarity=0.361 Sum_probs=72.7
Q ss_pred eceeeeeeeecCCCHHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCCCCCcceEEEEEEEeecCCCcceeeEEEecCCc
Q psy2644 24 LRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTS 103 (119)
Q Consensus 24 lk~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~~~~~~v~fEiEVcrl~~l~l~gi~fkRl~Gd~ 103 (119)
-+..|.+++.|..+|.+||.||+|+|+.+|++|++.++|.++|++..+..+..++|+++++++.. +.|.|||||++|+.
T Consensus 394 ~~~~w~lgi~s~~~p~~im~ev~~al~~lg~~Wk~~~~~~i~~r~~~~~~~~~~k~~lqly~~~~-~~~llDf~~~~~~~ 472 (476)
T 2y94_A 394 RKAKWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVDS-RTYLLDFRSIDDEI 472 (476)
T ss_dssp CCCCEEESEEECSCHHHHHHHHHHHHHTTTCBCCEEETTEEEEEEECTTTCCEEEEEEEEEECSS-SCEEEEEEEECCC-
T ss_pred ccceeeecCccCCCHHHHHHHHHHHHHHcCCeeccCCCEEEEEEECCCCCCceEEEEEEEEEecC-CcEEEEeeecCCCc
Confidence 47889999999999999999999999999999999999999999977666778999999999985 68999999999998
Q ss_pred hhH
Q psy2644 104 IGF 106 (119)
Q Consensus 104 ~~Y 106 (119)
+.|
T Consensus 473 ~~~ 475 (476)
T 2y94_A 473 LEV 475 (476)
T ss_dssp ---
T ss_pred ccc
Confidence 876
No 10
>2ehb_D CBL-interacting serine/threonine-protein kinase 2; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana}
Probab=98.72 E-value=1.2e-07 Score=67.35 Aligned_cols=86 Identities=21% Similarity=0.310 Sum_probs=71.0
Q ss_pred eeecCCCHHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCCCCCcceEEEEEEEeecCCCcceeeEEEecCCchhHHHHH
Q psy2644 31 KTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTSIGFKNIA 110 (119)
Q Consensus 31 ~ttSsk~P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~~~~~~v~fEiEVcrl~~l~l~gi~fkRl~Gd~~~Yk~lc 110 (119)
.-||..+|++|+..|..+...+|..++.++ +.++......+.+..+.+.+||+.+.. +++.|.+++-.||+..|++++
T Consensus 37 RF~s~~~a~~ii~klEe~a~~lg~~V~kk~-~~vkl~~~~~grkG~l~v~~EVfevap-sl~vVEvrks~GD~lEy~k~~ 114 (143)
T 2ehb_D 37 RFVSRREPSEIIANIEAVANSMGFKSHTRN-FKTRLEGLSSIKAGQLAVVIEIYEVAP-SLFMVDVRKAAGETLEYHKFY 114 (143)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTEEEEESS-SEEEEEECCSSGGGCCEEEEEEEEEET-TEEEEEEEEEESCHHHHHHHH
T ss_pred eEEeCCCHHHHHHHHHHHHHhcCcEEEEcC-cEEEEEEecCCCcceEEEEEEEEEecC-CEEEEEEEecCCChHHHHHHH
Confidence 447899999999999999999999998766 566654322223456899999999984 799999999999999999988
Q ss_pred HHHHHhcC
Q psy2644 111 SKIANELK 118 (119)
Q Consensus 111 ~~il~~l~ 118 (119)
.+|-..|+
T Consensus 115 ~~Lr~~L~ 122 (143)
T 2ehb_D 115 KKLCSKLE 122 (143)
T ss_dssp HHHHHHST
T ss_pred HHHHHHhh
Confidence 88877664
No 11
>2zfd_B Putative uncharacterized protein T20L15_90; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana}
Probab=98.35 E-value=5.8e-07 Score=62.33 Aligned_cols=82 Identities=9% Similarity=0.132 Sum_probs=62.2
Q ss_pred eeecCCCHHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCCCCCcceEEEEEEEeecCCCcceeeEEEecCCchhHHHHH
Q psy2644 31 KTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTSIGFKNIA 110 (119)
Q Consensus 31 ~ttSsk~P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~~~~~~v~fEiEVcrl~~l~l~gi~fkRl~Gd~~~Yk~lc 110 (119)
.-||..+|++|+..|..+...+|..++.++ +. .+.... .+..+.+.+||+.+.. +++.|.+|+-.||+..|+++|
T Consensus 35 RF~S~~~a~~ii~klEe~a~~lg~~v~kk~-~~-~~~~~g--~kG~l~v~~EVfev~p-~l~vVEvrks~GD~lEy~~~~ 109 (123)
T 2zfd_B 35 RFVSAWTAERVVERLEEIVSAENLTVAKKE-TW-GMKIEG--QKGNFAMVVEINQLTD-ELVMIEVRKRQRAAASGRDLW 109 (123)
T ss_dssp EEEESSCHHHHHHHHHHHHHHTTCEEEEEE-TT-EEEEEE--GGGTEEEEEEEEECSS-SCEEEEEEEEESCC---CCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHCCCEEEEcC-Cc-cccccC--CCccEEEEEEEEEecC-CEEEEEEEecCCChHHHHHHH
Confidence 447899999999999999999999998765 32 343222 1346899999999984 789999999999999999977
Q ss_pred H-HHHHhc
Q psy2644 111 S-KIANEL 117 (119)
Q Consensus 111 ~-~il~~l 117 (119)
. +|-..|
T Consensus 110 ~~~L~~~L 117 (123)
T 2zfd_B 110 TDTLRPFF 117 (123)
T ss_dssp HHTHHHHH
T ss_pred HHHHHHHH
Confidence 5 454443
No 12
>3ost_A Serine/threonine-protein kinase KCC4; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.69A {Saccharomyces cerevisiae} PDB: 3osm_A
Probab=95.99 E-value=0.027 Score=39.12 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=59.4
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCC--------------CCCcceEEEEEEEeecCCCc-
Q psy2644 27 TWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDP--------------NTDSLVQWEIEVCKLPRLSL- 91 (119)
Q Consensus 27 ~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~--------------~~~~~v~fEiEVcrl~~l~l- 91 (119)
.|++..-+..+-.++..||.+.|. .|++ |.|+=.+.|. .+=..+.|++||+ ++-++
T Consensus 24 ~~d~~l~t~v~k~~~~~~L~~LL~----~Wk~---yGlkdv~~D~~~~~ItGrvs~~N~L~LRsv~F~i~i~--~~gn~~ 94 (128)
T 3ost_A 24 ILELEIHAKIPEKRLYEGLHKLLE----GWKQ---YGLKNLVFNITNMIITGKLVNDSILFLRSTLFEIMVL--PNGDGR 94 (128)
T ss_dssp ECSCCEEESSCHHHHHHHHHHHHH----TCGG---GTEEEEEEETTTTEEEEEECCCCSSSCCCEEEEEEEE--ECSTTC
T ss_pred CccEEEEEecCHHHHHHHHHHHHH----HHHH---hCccceEecCCCCEEEEEEccccccccceeEEEEEEe--ecCCce
Confidence 478888889999999999999999 5653 3233322221 1224699999999 44455
Q ss_pred ceeeEEEecCCchhHHHHHHHHH
Q psy2644 92 NGVRFKRISGTSIGFKNIASKIA 114 (119)
Q Consensus 92 ~gi~fkRl~Gd~~~Yk~lc~~il 114 (119)
--|+|++.+|.+-.|..+.++|=
T Consensus 95 Slv~f~q~rGSsstf~klv~eiE 117 (128)
T 3ost_A 95 SLIKFNKKTGSTKTLTKLATEIQ 117 (128)
T ss_dssp EEEEEEESSSCHHHHHHHHHHHH
T ss_pred EEEEEEEeeccHHHHHHHHHHHH
Confidence 67999999999999999998763
No 13
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=59.62 E-value=10 Score=24.98 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=27.4
Q ss_pred eeeeeeeecCCCHHHHHHHHHHHHhhCCCce
Q psy2644 26 FTWSMKTTSSRDPNEIMAEIRKVLDANNCDY 56 (119)
Q Consensus 26 ~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~ 56 (119)
++|....+|..+-++++..|+.+|.+.|+..
T Consensus 3 ~m~~~~~~s~~s~~e~~~~l~~al~~~Gf~v 33 (130)
T 1q9u_A 3 AMFHYTVDVSTGMNETIERLEESLKQEGFGV 33 (130)
T ss_dssp CCSEEEEECSSCHHHHHHHHHHHHHHTTCEE
T ss_pred ccEEEEEEcCCCHHHHHHHHHHHHHHCCCEE
Confidence 4577888999999999999999999998863
No 14
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=58.80 E-value=9.8 Score=25.09 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=25.1
Q ss_pred eeeeeecCCCHHHHHHHHHHHHhhCCCce
Q psy2644 28 WSMKTTSSRDPNEIMAEIRKVLDANNCDY 56 (119)
Q Consensus 28 ~~v~ttSsk~P~eIm~ei~rvL~~~~i~~ 56 (119)
|....+|..+-++++..|+.+|.+.|+..
T Consensus 2 ~~~~~~s~~s~~e~~~~l~~al~~~Gf~v 30 (129)
T 1j3m_A 2 TGMRKTLKATLAEARAQVEAALKEEGFGI 30 (129)
T ss_dssp -CEEEEESSCHHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHHCCCEE
Confidence 56678899999999999999999999863
No 15
>3ost_A Serine/threonine-protein kinase KCC4; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.69A {Saccharomyces cerevisiae} PDB: 3osm_A
Probab=54.81 E-value=22 Score=24.40 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=36.7
Q ss_pred CcceeeeCC-CCCCCCCCeEeceeeeeee--------------ecCCCHHHHHHHHHHHHhhCCCc
Q psy2644 5 PKHNVVSNA-VNDDQVKPRSLRFTWSMKT--------------TSSRDPNEIMAEIRKVLDANNCD 55 (119)
Q Consensus 5 ~~~~~~~~~-~~~~~~kpR~lk~~~~v~t--------------tSsk~P~eIm~ei~rvL~~~~i~ 55 (119)
+.+++|+|+ +++..-..|+.+|.-.+-- -|++.-..+.+||..||++.|+-
T Consensus 61 ~~~~~ItGrvs~~N~L~LRsv~F~i~i~~~gn~~Slv~f~q~rGSsstf~klv~eiEkVL~kegvL 126 (128)
T 3ost_A 61 ITNMIITGKLVNDSILFLRSTLFEIMVLPNGDGRSLIKFNKKTGSTKTLTKLATEIQIILQKEGVL 126 (128)
T ss_dssp TTTTEEEEEECCCCSSSCCCEEEEEEEEECSTTCEEEEEEESSSCHHHHHHHHHHHHHHHHHTTCB
T ss_pred CCCCEEEEEEccccccccceeEEEEEEeecCCceEEEEEEEeeccHHHHHHHHHHHHHHHHhcCcc
Confidence 457889999 7777777777766544321 14445688999999999998863
No 16
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A
Probab=51.76 E-value=46 Score=24.79 Aligned_cols=48 Identities=15% Similarity=0.320 Sum_probs=37.8
Q ss_pred eCCCCCCCCCCeEeceeeeeeeecCCCHHHHHHHHHHHHhhCCCceEE
Q psy2644 11 SNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQ 58 (119)
Q Consensus 11 ~~~~~~~~~kpR~lk~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~~~ 58 (119)
+|.......-|-.....+++.+....+++++.++|.+.+++.|+.++.
T Consensus 238 ~gg~~~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~~~~~g~~~~i 285 (377)
T 3isz_A 238 HAGTGSNNVIPAELYIQFNLRYCTEVTDEIIKQKVAEMLEKHNLKYRI 285 (377)
T ss_dssp EECCSCSSCCCSEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ECCCCCCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 444323345677888999999999999999999999999998887653
No 17
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Probab=49.36 E-value=28 Score=27.59 Aligned_cols=63 Identities=8% Similarity=0.113 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCCCCCcceEEEEEEEeecCCCcceeeEEEecCCchhHHHHHHHHHHhc
Q psy2644 38 PNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTSIGFKNIASKIANEL 117 (119)
Q Consensus 38 P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~~~~~~v~fEiEVcrl~~l~l~gi~fkRl~Gd~~~Yk~lc~~il~~l 117 (119)
-.+++.+|.++|+++||..+... ++. ..-|||+.+-.-..+ ...-+.|.||.+.++|..+.
T Consensus 191 ~~~~~~~i~~~l~~~Gi~ve~~h-------~E~----~pgQ~Ei~~~~~~~l--------~aAD~~~~~k~~vk~vA~~~ 251 (384)
T 2ojw_A 191 GRDIVEAHYRACLYAGVKIAGTN-------AEV----MPAQWEFQIGPCEGI--------SMGDHLWVARFILHRVCEDF 251 (384)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEE-------ECS----STTEEEEEEEEEETT--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCeEeee-------cCC----CCcceEEEcCCCcHH--------HHHHHHHHHHHHHHHHHHHh
Confidence 46999999999999999987421 221 134899887665443 24567789999999998776
Q ss_pred CC
Q psy2644 118 KL 119 (119)
Q Consensus 118 ~L 119 (119)
++
T Consensus 252 Gl 253 (384)
T 2ojw_A 252 GV 253 (384)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 18
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}
Probab=49.18 E-value=21 Score=28.12 Aligned_cols=63 Identities=10% Similarity=0.125 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCCCCCcceEEEEEEEeecCCCcceeeEEEecCCchhHHHHHHHHHHhc
Q psy2644 38 PNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTSIGFKNIASKIANEL 117 (119)
Q Consensus 38 P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~~~~~~v~fEiEVcrl~~l~l~gi~fkRl~Gd~~~Yk~lc~~il~~l 117 (119)
-.+++.+|.++|.++||..+... |+. ..-|||+.+-.-..+ ...-+.|.||.+.++|..+.
T Consensus 169 ~~~i~~~i~~~l~~~Gi~ve~~h-------~E~----~pGQ~Ei~~~~~~~l--------~aAD~~~~~K~~vk~vA~~~ 229 (370)
T 3fky_A 169 ARDMIEAHYRACLYAGLEISGIN-------AEV----MPSQWEFQVGPCTGI--------DMGDQLWMARYFLHRVAEEF 229 (370)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEE-------ECS----STTEEEEEEEEEETH--------HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCeeeee-------cCc----CCCceEEecCCCCHH--------HHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999987422 221 135899887665432 45667789999999988776
Q ss_pred CC
Q psy2644 118 KL 119 (119)
Q Consensus 118 ~L 119 (119)
++
T Consensus 230 G~ 231 (370)
T 3fky_A 230 GI 231 (370)
T ss_dssp TC
T ss_pred Cc
Confidence 53
No 19
>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1
Probab=44.72 E-value=47 Score=25.28 Aligned_cols=48 Identities=13% Similarity=0.387 Sum_probs=37.3
Q ss_pred eeCCCCCCCCCCeEeceeeeeeeecCCCHHHHHHHHHHHHhhCCCceE
Q psy2644 10 VSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYE 57 (119)
Q Consensus 10 ~~~~~~~~~~kpR~lk~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~~ 57 (119)
|+|.......-|-.....+++.+....+++++.++|.++++..++.++
T Consensus 240 i~gG~~~~NviP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~~~~~ 287 (393)
T 1vgy_A 240 INGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYD 287 (393)
T ss_dssp EEECCSCTTEECSEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EcCCCCCCcccCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHhCCCeE
Confidence 444432334457788899999999999999999999999998877543
No 20
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=44.26 E-value=89 Score=22.66 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEE
Q psy2644 35 SRDPNEIMAEIRKVLDANNCDYEQ 58 (119)
Q Consensus 35 sk~P~eIm~ei~rvL~~~~i~~~~ 58 (119)
+.+.+++..+=+..|++.+|.|++
T Consensus 128 ~~s~~~l~~~Ae~GL~~~ni~yr~ 151 (197)
T 3gr0_A 128 LMDDVTAAGQAEAGLKQQALPYSR 151 (197)
T ss_dssp EECHHHHHHHHHHHHHHTTCCEEE
T ss_pred EcCHHHHHHHHHhhHHhcCCceEE
Confidence 678999999999999999999987
No 21
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*
Probab=43.34 E-value=24 Score=27.58 Aligned_cols=62 Identities=13% Similarity=0.024 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCCCCCcceEEEEEEEeecCCCcceeeEEEecCCchhHHHHHHHHHHhc
Q psy2644 38 PNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTSIGFKNIASKIANEL 117 (119)
Q Consensus 38 P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~~~~~~v~fEiEVcrl~~l~l~gi~fkRl~Gd~~~Yk~lc~~il~~l 117 (119)
-.+++.|+.++|+++||..+... |+. ..-|||+.+-.-..+ ...-+.|.||.+.++|..+.
T Consensus 168 ~~~~~~~i~~~l~~~Gi~ve~~h-------~E~----~pgQ~Ei~~~~~~~l--------~aAD~~~~~k~~vk~vA~~~ 228 (356)
T 2d3a_A 168 GRDIVDAHYKACLYAGINISGIN-------GEV----MPGQWEFQVGPSVGI--------SSGDQVWVARYILERITEIA 228 (356)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEE-------ECS----STTEEEEEEEEEETH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCEEEee-------cCc----CCCceEEecCCCCHH--------HHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999986422 221 124898876654332 34667789999999988765
Q ss_pred C
Q psy2644 118 K 118 (119)
Q Consensus 118 ~ 118 (119)
+
T Consensus 229 G 229 (356)
T 2d3a_A 229 G 229 (356)
T ss_dssp T
T ss_pred C
Confidence 4
No 22
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=37.56 E-value=30 Score=24.95 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=20.1
Q ss_pred ecCCCHHHHHHHHHHHHhhCCCc
Q psy2644 33 TSSRDPNEIMAEIRKVLDANNCD 55 (119)
Q Consensus 33 tSsk~P~eIm~ei~rvL~~~~i~ 55 (119)
-.+.++++|..+|..+|++.|+.
T Consensus 195 dg~~~~eeV~~~I~~~l~k~G~k 217 (217)
T 3umf_A 195 DASGTVDAIFDKVNHELQKFGVK 217 (217)
T ss_dssp ETTSCHHHHHHHHHHHHHTTTCC
T ss_pred ECCCCHHHHHHHHHHHHHHcCCC
Confidence 35679999999999999999874
No 23
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=36.32 E-value=47 Score=23.78 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHhhCCCceE
Q psy2644 35 SRDPNEIMAEIRKVLDANNCDYE 57 (119)
Q Consensus 35 sk~P~eIm~ei~rvL~~~~i~~~ 57 (119)
|.+=-.+|.|...+|+.+||+|+
T Consensus 21 S~SD~~v~~~a~~~l~~~gi~~e 43 (173)
T 4grd_A 21 SSSDWDVMKHAVAILQEFGVPYE 43 (173)
T ss_dssp SGGGHHHHHHHHHHHHHTTCCEE
T ss_pred cHhHHHHHHHHHHHHHHcCCCEE
Confidence 33445689999999999999986
No 24
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=32.48 E-value=56 Score=21.92 Aligned_cols=30 Identities=7% Similarity=0.340 Sum_probs=24.4
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHhhCCCce
Q psy2644 27 TWSMKTTSSRDPNEIMAEIRKVLDANNCDY 56 (119)
Q Consensus 27 ~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~ 56 (119)
+|.+.+-...||.+||.||...+.+.-=.|
T Consensus 55 mWklPmf~~~d~~~Vl~Ele~C~k~~p~~y 84 (118)
T 3zxw_B 55 MWKLPLFNCTNAQDVLNEVQQCRSEYPNCF 84 (118)
T ss_dssp EESSCCTTCCCHHHHHHHHHHHHHHCTTSE
T ss_pred ecccCCcCCCCHHHHHHHHHHHHHHCCCce
Confidence 456788889999999999999999754444
No 25
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}
Probab=32.32 E-value=43 Score=27.23 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCCCCCcceEEEEEEEeecCCCcceeeEEEecCCchhHHHHHHHHHHh
Q psy2644 37 DPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTSIGFKNIASKIANE 116 (119)
Q Consensus 37 ~P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~~~~~~v~fEiEVcrl~~l~l~gi~fkRl~Gd~~~Yk~lc~~il~~ 116 (119)
.-++++.||.++|+++||..+... |+. +..-|||+.+-.-. --+..-+.|.||.+.++|..+
T Consensus 190 ~~~~~~~~i~~~l~~~Gi~ve~~h-------~E~---~~pGQ~Ei~~~~~~--------~l~aAD~~~~~k~~vk~vA~~ 251 (473)
T 3ng0_A 190 TAQDIRTEMLLTMAAFGVPIEKHH-------HEV---ASGGQNELGIKFDK--------LVNSADNLMIYKYVIKNVAKK 251 (473)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEE-------ECS---STTTEEEEEECCEE--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCCCeEEee-------cCc---CCCCceEEEccCCC--------HHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999987422 211 11368887754432 224567778999999999877
Q ss_pred cCC
Q psy2644 117 LKL 119 (119)
Q Consensus 117 l~L 119 (119)
.++
T Consensus 252 ~G~ 254 (473)
T 3ng0_A 252 YGK 254 (473)
T ss_dssp TTC
T ss_pred hCC
Confidence 654
No 26
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}
Probab=32.28 E-value=37 Score=27.44 Aligned_cols=63 Identities=10% Similarity=0.137 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCCCCCcceEEEEEEEeecCCCcceeeEEEecCCchhHHHHHHHHHHhc
Q psy2644 38 PNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTSIGFKNIASKIANEL 117 (119)
Q Consensus 38 P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~~~~~~v~fEiEVcrl~~l~l~gi~fkRl~Gd~~~Yk~lc~~il~~l 117 (119)
-++++.||.++|.++||..+... |+. ..-|||+.+-.-..+ ...-+.|.||.+.++|..+.
T Consensus 156 ~~~~~~~i~~~l~~~Gi~ve~~h-------~E~----~pgQ~Ei~~~~~~~l--------~aAD~~~~~k~~vk~vA~~~ 216 (443)
T 4hpp_A 156 AGQFPGWLVSALAQAGTEPEMFL-------PEY----GQRQYEVTCRPAQGV--------AAADRAVNVREVTREVARQM 216 (443)
T ss_dssp TTTHHHHHHHHHHHTTCCEEEEE-------ECS----STTEEEEEECCEETH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCeEEee-------cCC----CCCceEEEecCCcHH--------HHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999987422 211 236898876553322 35667789999999988765
Q ss_pred CC
Q psy2644 118 KL 119 (119)
Q Consensus 118 ~L 119 (119)
++
T Consensus 217 G~ 218 (443)
T 4hpp_A 217 GL 218 (443)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 27
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=31.03 E-value=50 Score=23.15 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHhhCCCceEEeC----cEEEEee
Q psy2644 36 RDPNEIMAEIRKVLDANNCDYEQRE----RFLLLCV 67 (119)
Q Consensus 36 k~P~eIm~ei~rvL~~~~i~~~~~g----~y~l~C~ 67 (119)
.++.+ ..+|..+|+++||+|+..+ .+.+..-
T Consensus 7 L~~~d-a~~i~~~L~~~~I~y~~~~~~~~g~~I~Vp 41 (170)
T 2y9j_Y 7 LDQEQ-ANEVIAVLQMHNIEANKIDSGKLGYSITVA 41 (170)
T ss_dssp ECHHH-HHHHHHHHHHTTCCEEEEECTTSCEEEEEC
T ss_pred CCHHH-HHHHHHHHHHcCCCEEEecCCCCCeEEEEC
Confidence 34455 6889999999999998753 3776663
No 28
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=30.17 E-value=40 Score=23.34 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=24.0
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHhhCCCce
Q psy2644 27 TWSMKTTSSRDPNEIMAEIRKVLDANNCDY 56 (119)
Q Consensus 27 ~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~ 56 (119)
+|.+-+--..||.+||.||...+.+.-=.|
T Consensus 75 mWkLPmFg~td~~qVl~El~~C~k~~P~~Y 104 (140)
T 1gk8_I 75 MWKLPMFGCRDPMQVLREIVACTKAFPDAY 104 (140)
T ss_dssp EESCCCTTCCCHHHHHHHHHHHHHHCTTSE
T ss_pred eCCcCCcCCCCHHHHHHHHHHHHHHCCCCe
Confidence 566778889999999999999998644333
No 29
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=28.70 E-value=34 Score=18.58 Aligned_cols=15 Identities=20% Similarity=0.508 Sum_probs=9.5
Q ss_pred ecCCCHHHHHHHHHH
Q psy2644 33 TSSRDPNEIMAEIRK 47 (119)
Q Consensus 33 tSsk~P~eIm~ei~r 47 (119)
|...||.++++|+.+
T Consensus 7 t~~ddP~~lLQ~Llr 21 (39)
T 1gng_X 7 TGDDDPHRLLQQLVL 21 (39)
T ss_dssp ----CHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 567899999998865
No 30
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=26.33 E-value=98 Score=21.42 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhCCCceEEe--C---cEEEEee
Q psy2644 38 PNEIMAEIRKVLDANNCDYEQR--E---RFLLLCV 67 (119)
Q Consensus 38 P~eIm~ei~rvL~~~~i~~~~~--g---~y~l~C~ 67 (119)
+.+|+.+|...|.+.|++.... | .|.+.|.
T Consensus 94 A~~iL~~le~~L~~~g~eV~raPFGwyK~F~i~ck 128 (143)
T 2hl0_A 94 AMDILNRVYQGLKERGFNVGKAPFGYYKAFKISCK 128 (143)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSSEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCccceeEEEEec
Confidence 5678999999999999875531 1 2678885
No 31
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=26.13 E-value=1.7e+02 Score=21.58 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEEe---CcEEEEeeeCCC------------------CCCcceEEEEEEE
Q psy2644 35 SRDPNEIMAEIRKVLDANNCDYEQR---ERFLLLCVHGDP------------------NTDSLVQWEIEVC 84 (119)
Q Consensus 35 sk~P~eIm~ei~rvL~~~~i~~~~~---g~y~l~C~~~~~------------------~~~~~v~fEiEVc 84 (119)
..+.+++..+=+..|.+.+|.|++. +.+.+- ..+.- +|...|+|.+++-
T Consensus 128 ~~s~~~l~~~Ae~GL~~~ni~yr~i~~~~~vtFi-I~~~L~D~~l~~l~~fi~~f~~~WG~~~IqFsI~L~ 197 (227)
T 3gr1_A 128 LMDDVTAAGQAEAGLKQQALPYSRRNHKGGVTFV-IQGALDDVEILRARQFVDSYYRTWGGRYVQFAIELK 197 (227)
T ss_dssp EECHHHHHHHHHHHHHHTTCCEEEEEETTEEEEE-ECSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECCC
T ss_pred EcCHHHHHHHHHhhHHhcCCceEEEecCCeEEEE-EcCCCCHHHHHHHHHHHHHHHHHhCccEEEEEEEec
Confidence 6789999999999999999999872 334333 22211 2567899998843
No 32
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*
Probab=24.90 E-value=77 Score=25.69 Aligned_cols=69 Identities=14% Similarity=-0.046 Sum_probs=47.0
Q ss_pred ecCCCHHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCCCCCcceEEEEEEEeecCCCcceeeEEEecCCchhHHHHHHH
Q psy2644 33 TSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTSIGFKNIASK 112 (119)
Q Consensus 33 tSsk~P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~~~~~~v~fEiEVcrl~~l~l~gi~fkRl~Gd~~~Yk~lc~~ 112 (119)
.....-++++.||.++|.++||..+... |.. +..-|||+.+-.-.. -+..-+.|.||.++++
T Consensus 198 ~~~~~~~~~~~~i~~~l~~~Gi~ve~~h-------~E~---gp~GQ~Ei~~~~~~~--------l~aAD~~~~~k~~vk~ 259 (486)
T 4acf_A 198 APNDQYVDLRDKMLTNLINSGFILEKGH-------HEV---GSGGQAEINYQFNSL--------LHAADDMQLYKYIIKN 259 (486)
T ss_dssp TTTSCCHHHHHHHHHHHHHTTCCEEEEE-------ECS---STTTEEEEEECCEEH--------HHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHhCCceEEeee-------eee---eccceeEEeccCcch--------hhhhhHHHHHHHHHHH
Confidence 3444568999999999999999886321 211 112488877544322 2456777999999999
Q ss_pred HHHhcCC
Q psy2644 113 IANELKL 119 (119)
Q Consensus 113 il~~l~L 119 (119)
|....++
T Consensus 260 vA~~~G~ 266 (486)
T 4acf_A 260 TAWQNGK 266 (486)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 9877654
No 33
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=24.81 E-value=98 Score=20.40 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=23.3
Q ss_pred eeeeeeecCCCHHHHHHHHHHHHhhCCCce
Q psy2644 27 TWSMKTTSSRDPNEIMAEIRKVLDANNCDY 56 (119)
Q Consensus 27 ~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~ 56 (119)
+|.+-+--..|+.+||.||...+.+.-=.|
T Consensus 58 mwklPmf~~~d~~~Vl~El~~C~k~~p~~y 87 (110)
T 1svd_M 58 MWKLPFFGEQNVDNVLAEIEACRSAYPTHQ 87 (110)
T ss_dssp EESCCCTTCCCHHHHHHHHHHHHHHSTTSE
T ss_pred ecccCCcCCCCHHHHHHHHHHHHHHCCCCe
Confidence 345667788999999999999998754334
No 34
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=23.91 E-value=61 Score=22.25 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=18.4
Q ss_pred cCCCHHHHHHHHHHHHhhCCCc
Q psy2644 34 SSRDPNEIMAEIRKVLDANNCD 55 (119)
Q Consensus 34 Ssk~P~eIm~ei~rvL~~~~i~ 55 (119)
+.++|+++..+|...+...|+-
T Consensus 185 ~~~s~eev~~~I~~~l~~~~~~ 206 (211)
T 1m7g_A 185 YELPVQDAVKQIIDYLDTKGYL 206 (211)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHHHHHHHcCCc
Confidence 4459999999999999987754
No 35
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=23.86 E-value=91 Score=20.63 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=20.3
Q ss_pred eeecCCCHHHHH---HHHHHHHhhCCCceEEe
Q psy2644 31 KTTSSRDPNEIM---AEIRKVLDANNCDYEQR 59 (119)
Q Consensus 31 ~ttSsk~P~eIm---~ei~rvL~~~~i~~~~~ 59 (119)
-|||..+.-+|. ..+++.|+++||+|++.
T Consensus 5 Ytt~~c~~c~~kk~c~~aK~lL~~kgV~feEi 36 (121)
T 1u6t_A 5 YIASSSGSTAIKKKQQDVLGFLEANKIGFEEK 36 (121)
T ss_dssp EECTTCSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EecCCCCCccchHHHHHHHHHHHHCCCceEEE
Confidence 344555544444 57888999999999864
No 36
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=23.73 E-value=52 Score=22.42 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=19.6
Q ss_pred eeeeecC-CCHHHHHHHHHHHHhhCCC
Q psy2644 29 SMKTTSS-RDPNEIMAEIRKVLDANNC 54 (119)
Q Consensus 29 ~v~ttSs-k~P~eIm~ei~rvL~~~~i 54 (119)
-+.| +. ++|+++..+|.+.|...++
T Consensus 172 ~idt-~~~~~~~e~v~~i~~~l~~~~~ 197 (200)
T 3uie_A 172 SLGR-EGGTSPIEMAEKVVGYLDNKGY 197 (200)
T ss_dssp EECC-SSCCCHHHHHHHHHHHHHHHTT
T ss_pred EEec-CCCCCHHHHHHHHHHHHHHcCC
Confidence 3444 44 7999999999999987664
No 37
>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum}
Probab=22.95 E-value=92 Score=23.27 Aligned_cols=40 Identities=18% Similarity=0.363 Sum_probs=33.0
Q ss_pred CCCCeEeceeeeeeeecCCCHHHHHHHHHHHHhh---CCCceE
Q psy2644 18 QVKPRSLRFTWSMKTTSSRDPNEIMAEIRKVLDA---NNCDYE 57 (119)
Q Consensus 18 ~~kpR~lk~~~~v~ttSsk~P~eIm~ei~rvL~~---~~i~~~ 57 (119)
..-|-.....+++.+.+..+++++.++|.++++. .|+.++
T Consensus 243 NvIP~~a~~~~diR~~~~~~~~~v~~~i~~~~~~~~~~g~~~~ 285 (369)
T 3tx8_A 243 NVIPDLAWMNLNFRFAPNRDLNEAIEHVVETLELDGQDGIEWA 285 (369)
T ss_dssp TBCCSEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSTTEEEE
T ss_pred ccccCcEEEEEEEecCCCCCHHHHHHHHHHHHHhcccCCeEEE
Confidence 4557788899999999999999999999999987 355444
No 38
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=22.50 E-value=1.2e+02 Score=19.27 Aligned_cols=25 Identities=12% Similarity=0.389 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhCCCceEEeCcEEEEee
Q psy2644 39 NEIMAEIRKVLDANNCDYEQRERFLLLCV 67 (119)
Q Consensus 39 ~eIm~ei~rvL~~~~i~~~~~g~y~l~C~ 67 (119)
.+|.++|++.|.+++.+|| |.+.|.
T Consensus 42 ~~i~~~i~~~lk~l~~~YK----~iV~v~ 66 (111)
T 1ygt_A 42 GQVVENCLTVLTKEQKPYK----YIVTAM 66 (111)
T ss_dssp HHHHHHHHHHHHTTCCSEE----EEEEEE
T ss_pred HHHHHHHHHHHHhhCCCce----EEEEEE
Confidence 5688999999999987776 555553
No 39
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=22.45 E-value=98 Score=20.35 Aligned_cols=29 Identities=17% Similarity=0.463 Sum_probs=22.6
Q ss_pred eeeeeecCCCHHHHHHHHHHHHhhCCCce
Q psy2644 28 WSMKTTSSRDPNEIMAEIRKVLDANNCDY 56 (119)
Q Consensus 28 ~~v~ttSsk~P~eIm~ei~rvL~~~~i~~ 56 (119)
|.+-+--..|+.+||.||...+.+.-=.|
T Consensus 57 wklPmf~~~d~~~Vl~Ele~C~k~~p~~y 85 (109)
T 1rbl_M 57 WKLPLFACAAPQQVLDEVRECRSEYGDCY 85 (109)
T ss_dssp CSSCCTTCCCHHHHHHHHHHHHHHCTTSE
T ss_pred cccCCcCCCCHHHHHHHHHHHHHHCCCCe
Confidence 44567788999999999999998644333
No 40
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=22.38 E-value=1.3e+02 Score=19.47 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=25.6
Q ss_pred EeceeeeeeeecCCCHHHHHHHHHHHHhhCCCceE
Q psy2644 23 SLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYE 57 (119)
Q Consensus 23 ~lk~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~~ 57 (119)
..+..|-++-+... +++++.++.+.++++|++-.
T Consensus 111 ~~~~~~llsR~~~~-~~e~~~~f~~~~~~~G~~~~ 144 (157)
T 1dzk_A 111 KTIMTGLLGKGTDI-EDQDLEKFKEVTRENGIPEE 144 (157)
T ss_dssp EEEEEEEEESSSCC-CHHHHHHHHHHHHHTTCCGG
T ss_pred eEEEEEEEecCCCC-CHHHHHHHHHHHHHcCCCHH
Confidence 45666777765444 56889999999999999753
No 41
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=22.30 E-value=66 Score=21.27 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=18.2
Q ss_pred ecCCCHHHHHHHHHHHHhhCCC
Q psy2644 33 TSSRDPNEIMAEIRKVLDANNC 54 (119)
Q Consensus 33 tSsk~P~eIm~ei~rvL~~~~i 54 (119)
++..+|+++..+|.+.+...|.
T Consensus 157 ~~~~~~~~~~~~i~~~l~~~~~ 178 (179)
T 2pez_A 157 TDSCDVNDCVQQVVELLQERDI 178 (179)
T ss_dssp TTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHhcC
Confidence 4567999999999999987653
No 42
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=22.04 E-value=1.1e+02 Score=19.94 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=26.7
Q ss_pred eEeceeeeeeeecCCCHHHHHHHHHHHHhhCCCceE
Q psy2644 22 RSLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYE 57 (119)
Q Consensus 22 R~lk~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~~ 57 (119)
...+..|-++-+... +++++.++.+.++++|++-.
T Consensus 109 ~~~~~~~llsR~~~l-~~e~~~~f~~~~~~~G~~~~ 143 (156)
T 1bj7_A 109 RITKMTEGLAKGTSF-TPEELEKYQQLNSERGVPNE 143 (156)
T ss_dssp CEEEEEEEEESSSCC-CHHHHHHHHHHHHHHTCCGG
T ss_pred cEEEEEEEEecCCCC-CHHHHHHHHHHHHHcCCCHH
Confidence 355677777765554 56899999999999999754
No 43
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=21.48 E-value=1.4e+02 Score=19.43 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=25.7
Q ss_pred EeceeeeeeeecCCCHHHHHHHHHHHHhhCCCceE
Q psy2644 23 SLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYE 57 (119)
Q Consensus 23 ~lk~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~~ 57 (119)
..+..|-++-+.. -+++++.++.+.++++|++-.
T Consensus 112 ~~~~~~llsR~~~-~~~e~~~~f~~~~~~~G~~~~ 145 (160)
T 2hlv_A 112 TTELTELFVKGLN-VEDEDLEKFWKLTEDKGIDKK 145 (160)
T ss_dssp EEEEEEEEECSSS-CCHHHHHHHHHHHHHTTCCGG
T ss_pred eEEEEEEEccCCC-CCHHHHHHHHHHHHHcCCCHH
Confidence 4556677776544 456999999999999999843
No 44
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=21.07 E-value=71 Score=18.53 Aligned_cols=21 Identities=10% Similarity=-0.013 Sum_probs=15.8
Q ss_pred HHHHHHHHhhCCCceEE-eCcE
Q psy2644 42 MAEIRKVLDANNCDYEQ-RERF 62 (119)
Q Consensus 42 m~ei~rvL~~~~i~~~~-~g~y 62 (119)
..|+.++|++.|+.... .|.-
T Consensus 7 ~~elik~L~~~G~~~~r~~GSH 28 (70)
T 1whz_A 7 PEEVARKLRRLGFVERMAKGGH 28 (70)
T ss_dssp HHHHHHHHHHTTCEEEEEETTE
T ss_pred HHHHHHHHHHCCCEEeCCCCCC
Confidence 36899999999998653 5543
No 45
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=20.99 E-value=37 Score=23.05 Aligned_cols=23 Identities=17% Similarity=0.018 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCceE
Q psy2644 35 SRDPNEIMAEIRKVLDANNCDYE 57 (119)
Q Consensus 35 sk~P~eIm~ei~rvL~~~~i~~~ 57 (119)
+.+|+++..+|.+.|.+.|+.+.
T Consensus 163 ~~~~~e~~~~I~~~l~~~~~~~~ 185 (202)
T 3t61_A 163 AQPLAEIVREALAGLARLAENLY 185 (202)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhcce
Confidence 38999999999999999998764
No 46
>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A
Probab=20.95 E-value=93 Score=23.37 Aligned_cols=46 Identities=11% Similarity=0.284 Sum_probs=36.5
Q ss_pred eeCCCCCCCCCCeEeceeeeeeeecCCCHHHHHHHHHHHHhhCCCce
Q psy2644 10 VSNAVNDDQVKPRSLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDY 56 (119)
Q Consensus 10 ~~~~~~~~~~kpR~lk~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~ 56 (119)
|+|.++ ...-|-.....+++.+.+..+++++.++|+++++..++.+
T Consensus 231 i~gG~~-~NviP~~a~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~ 276 (369)
T 2f7v_A 231 VDGGIK-ANMIAPAAELRFGFRPLPSMDVDGLLATFAGFADPAAAHF 276 (369)
T ss_dssp EEECSS-TTSCCSEEEEEEEEECCTTCCHHHHHHHHHHTCSSCCSEE
T ss_pred eecCCC-CCcCCCceEEEEEEeeCCCCCHHHHHHHHHHHHHHhcCce
Confidence 445433 3466888899999999999999999999999998876544
No 47
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=20.94 E-value=7.5 Score=25.49 Aligned_cols=25 Identities=0% Similarity=0.090 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHhhC----CCceEEeC
Q psy2644 36 RDPNEIMAEIRKVLDAN----NCDYEQRE 60 (119)
Q Consensus 36 k~P~eIm~ei~rvL~~~----~i~~~~~g 60 (119)
+.+..-+.-|.+.|+.. =|.|...|
T Consensus 10 ~~~p~F~~KL~~ml~d~~~~~iI~W~~~G 38 (102)
T 3hts_B 10 MARPAFVNKLWSMVNDKSNEKFIHWSTSG 38 (102)
T ss_dssp CCSCHHHHHHHHHHHCGGGTTTSEECTTS
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEeCCC
Confidence 44445566677777642 25676554
No 48
>3iz6_J 40S ribosomal protein S20 (S10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.75 E-value=1.6e+02 Score=19.77 Aligned_cols=66 Identities=11% Similarity=0.128 Sum_probs=42.6
Q ss_pred CCeEeceeeeeeeecCCCHHHHHHHHHHHHhhCCCceE-------EeCcEEEEeeeCCCCCCcceEEEEEEEe
Q psy2644 20 KPRSLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYE-------QRERFLLLCVHGDPNTDSLVQWEIEVCK 85 (119)
Q Consensus 20 kpR~lk~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~~-------~~g~y~l~C~~~~~~~~~~v~fEiEVcr 85 (119)
.+...+-...+.....+.-+....+|.++....|+..+ +...|.++-+-...+.+..-+||+-+.+
T Consensus 23 ~~~~~kIrI~LkS~d~~~Ld~~~~~I~~~ak~~g~~v~GPipLPTk~~r~TvlRSPhv~gKkSrEqFE~RtHK 95 (128)
T 3iz6_J 23 QEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHK 95 (128)
T ss_dssp SSSBCCCCCCEEEEESCHHHHHHHHHHHHHHHHHHSSCCCCCEEEEEEEEEEECCCCCSSCCSSCCEEEEEEE
T ss_pred cccccEEEEEEEECCHHHHHHHHHHHHHHHHHhCCceecccCCCCceEEEEEEecCCCCCCcchhheEEEEEE
Confidence 34444555556666677889999999999999888763 2223444332222112467899998876
No 49
>3v85_A CYTH-like phosphatase; CYTH domain, hydrolase; HET: CIT; 1.90A {Arabidopsis thaliana}
Probab=20.63 E-value=98 Score=21.64 Aligned_cols=24 Identities=13% Similarity=0.457 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCceEE
Q psy2644 35 SRDPNEIMAEIRKVLDANNCDYEQ 58 (119)
Q Consensus 35 sk~P~eIm~ei~rvL~~~~i~~~~ 58 (119)
..+|++....+...|.++||+|+.
T Consensus 172 ~~d~e~~~~~~~~lL~~~gI~~~~ 195 (210)
T 3v85_A 172 TEEPERVKTMIEEFLTEEKIEFSN 195 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred eCCHHHHHHHHHHHHHHcCCCcCc
Confidence 458999999999999999999975
No 50
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=20.17 E-value=1.3e+02 Score=20.36 Aligned_cols=31 Identities=13% Similarity=0.346 Sum_probs=24.5
Q ss_pred eeeeeeeecCCCHHHHHHHHHHHHhhCCCce
Q psy2644 26 FTWSMKTTSSRDPNEIMAEIRKVLDANNCDY 56 (119)
Q Consensus 26 ~~~~v~ttSsk~P~eIm~ei~rvL~~~~i~~ 56 (119)
-+|.+-+--..|+.+||.||...+.+.-=.|
T Consensus 67 ~mWkLPmFg~td~~~Vl~El~~C~k~~P~~Y 97 (128)
T 1wdd_S 67 TMWKLPMFGCTDATQVLKELEEAKKAYPDAF 97 (128)
T ss_dssp EEESCCCTTCCCHHHHHHHHHHHHHHCTTSE
T ss_pred cccCccCccCCCHHHHHHHHHHHHHHCCCCe
Confidence 3566778889999999999999998644333
No 51
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT AMP; 3.05A {Bacillus subtilis}
Probab=20.07 E-value=56 Score=26.32 Aligned_cols=63 Identities=19% Similarity=0.093 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhhCCCceEEeCcEEEEeeeCCCCCCcceEEEEEEEeecCCCcceeeEEEecCCchhHHHHHHHHHHh
Q psy2644 37 DPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNGVRFKRISGTSIGFKNIASKIANE 116 (119)
Q Consensus 37 ~P~eIm~ei~rvL~~~~i~~~~~g~y~l~C~~~~~~~~~~v~fEiEVcrl~~l~l~gi~fkRl~Gd~~~Yk~lc~~il~~ 116 (119)
.-+.+++||..+|+++||..+... |+. ..-|||+.+-.-.. -...-+.|.||.+.++|..+
T Consensus 164 ~~~~~~~~i~~~l~~~Gi~ve~~h-------~E~----~pGQ~Ei~~~~~~~--------l~aAD~~~~~k~~vk~vA~~ 224 (444)
T 3qaj_A 164 LGENCRRDIVLELEEMGFEIEASH-------HEV----APGQHEIDFKYAGA--------VRSCDDIQTFKLVVKTIARK 224 (444)
T ss_dssp CCTTHHHHHHHHHHTTTCCEEEEE-------ECS----STTEEEEEECCEEH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHCCCCeEEeE-------cCc----CCCcEEEecCCChH--------HHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999987421 211 24688877544321 24567778999999998876
Q ss_pred cC
Q psy2644 117 LK 118 (119)
Q Consensus 117 l~ 118 (119)
.+
T Consensus 225 ~G 226 (444)
T 3qaj_A 225 HG 226 (444)
T ss_dssp TT
T ss_pred cC
Confidence 54
Done!