RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2644
(119 letters)
>d1ul7a_ d.129.6.1 (A:) Map/microtubule affinity-regulating kinase 3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 152 bits (386), Expect = 4e-50
Identities = 82/100 (82%), Positives = 89/100 (89%)
Query: 20 KPRSLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQW 79
S RFTWSMKTTSS DP+++M EIRKVL ANNCDYEQRERFLL CVHGD + ++LVQW
Sbjct: 3 SGSSGRFTWSMKTTSSMDPSDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQW 62
Query: 80 EIEVCKLPRLSLNGVRFKRISGTSIGFKNIASKIANELKL 119
E+EVCKLPRLSLNGVRFKRISGTSI FKNIASKIANELKL
Sbjct: 63 EMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELKL 102
>d2v8qa1 d.129.6.2 (A:396-548) 5'-AMP-activated protein kinase
catalytic subunit alpha-1, AMPK1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 153
Score = 31.9 bits (72), Expect = 0.008
Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 28 WSMKTTSSRDPNEIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCKL- 86
W + S PN+IMAE+ + + + +++ + L +P T + + +++ ++
Sbjct: 1 WHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTFSKMSLQLYQVD 60
Query: 87 PRLSLNGVRFKRISG 101
R L + F+ I
Sbjct: 61 SRTYL--LDFRSIDD 73
>d2qlva1 d.129.6.2 (A:460-630) Carbon catabolite-derepressing
protein kinase SNF1 {Saccharomyces cerevisiae [TaxId:
4932]}
Length = 171
Score = 28.4 bits (63), Expect = 0.17
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 20 KPRSLRFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYEQ 58
+ + W S P ++M EI L ++ +
Sbjct: 38 VTKKSKTRWHFGIRSRSYPLDVMGEIYIALKNLGAEWAK 76
>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha
chain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 597
Score = 27.7 bits (60), Expect = 0.33
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 25 RFTWSMKTTSSRDPNEIMAEIRKVLDANNCDYE 57
R + + R+ ++ E R V D+
Sbjct: 501 RAGVDPQLVNFRNAEDVWNEWRMVSKGTTYDFW 533
>d2i06a1 e.2.1.1 (A:5-309) Replication terminator protein (Tus)
{Escherichia coli [TaxId: 562]}
Length = 305
Score = 27.1 bits (60), Expect = 0.46
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 21 PRSLRFTWSMKTTSSR-DPNEIMAEIRKVLDANNCDYE 57
P +LRF W+ K +E++A++ K L +
Sbjct: 161 PATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAP 198
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Salmonella typhimurium [TaxId: 90371]}
Length = 363
Score = 25.5 bits (55), Expect = 2.1
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 40 EIMAEIRKVLDANNCDYEQR---ERFLLLCVHGDPNTDSLVQWEIEVCKLPRLSLNG 93
E+MA+ KV+DA ++ R + + + D + L + +E C+ L G
Sbjct: 18 EVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFG 74
>d2qrda1 d.129.6.2 (A:450-576) Snf1-like protein kinase ssp2
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 127
Score = 24.5 bits (53), Expect = 2.7
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 28 WSMKTTSSRDPNEIMAEIRKVLDANNCDYEQ 58
W D EI+ + + L +
Sbjct: 3 WHFGVRCRGDAPEILLAVYRALQRAGAQFTV 33
>d1mtyg_ a.23.3.1 (G:) Methane monooxygenase hydrolase, gamma
subunit {Methylococcus capsulatus [TaxId: 414]}
Length = 162
Score = 24.5 bits (53), Expect = 3.4
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 31 KTTSSRDPNEIMAEIRKVLDANNCDYE 57
KT D ++ ++A +E
Sbjct: 77 KTAFGEDAKSVLDGTVAKMNAAKDKWE 103
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 337
Score = 24.8 bits (53), Expect = 3.4
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 40 EIMAEIRKVLDANNCDYEQRERFLLLCVHGDPNTDSLVQWEIEVCK 85
E+ AE KVLDA + + + L + L + +
Sbjct: 15 EVTAEAVKVLDAVVPGVQ-KTSYDLGARRFHATGEVLPDSVVAELR 59
>d1mhyg_ a.23.3.1 (G:) Methane monooxygenase hydrolase, gamma
subunit {Methylosinus trichosporium [TaxId: 426]}
Length = 167
Score = 24.5 bits (53), Expect = 3.8
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 31 KTTSSRDPNEIMAEIRKVLDANNCDYE 57
K T+ D + A + A YE
Sbjct: 80 KATTGEDAAAVEATWIAKIKAAKSKYE 106
>d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver
carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]}
Length = 532
Score = 24.7 bits (52), Expect = 3.9
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 68 HGDPNTDSLVQWE 80
+G+PN + L W
Sbjct: 485 NGNPNGEGLPHWP 497
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 24.4 bits (52), Expect = 4.8
Identities = 4/12 (33%), Positives = 8/12 (66%)
Query: 40 EIMAEIRKVLDA 51
++ + KV+DA
Sbjct: 40 DVTPAMLKVVDA 51
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermotoga maritima [TaxId: 2336]}
Length = 362
Score = 24.3 bits (52), Expect = 5.0
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 40 EIMAEIRKVLDA 51
E++ E KVL+
Sbjct: 22 EVVREALKVLEV 33
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus
subtilis [TaxId: 1423]}
Length = 423
Score = 24.3 bits (52), Expect = 5.3
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 40 EIMAEIRKVLDA 51
+I KVL+A
Sbjct: 33 DIWNAASKVLEA 44
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 336
Score = 24.0 bits (51), Expect = 6.2
Identities = 3/12 (25%), Positives = 9/12 (75%)
Query: 40 EIMAEIRKVLDA 51
EI+++ +++L
Sbjct: 15 EIVSKSKRILAK 26
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thiobacillus ferrooxidans [TaxId: 920]}
Length = 357
Score = 23.9 bits (51), Expect = 6.3
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 40 EIMAEIRKVLDA 51
EI+A R+VLDA
Sbjct: 15 EIVAAARQVLDA 26
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 335
Score = 23.9 bits (51), Expect = 6.4
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 42 MAEIRKVL------DANNCDYEQRERFLLLCVHGDPNTDSL 76
MA VL + N D+ R+RF+L H S+
Sbjct: 35 MAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSM 75
>d1c8na_ b.121.4.7 (A:) Necrovirus coat protein {TNV (Tobacco
necrosis virus) [TaxId: 12054]}
Length = 189
Score = 23.8 bits (51), Expect = 6.9
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 13 AVNDDQVKPRSLRFTWSMKTTSSRDPNEIMA 43
A N + + SLR +S K ++ M
Sbjct: 40 ADNYSKWRWVSLRIIYSPKCPTTTSGTVAMC 70
>d1ng0a_ b.121.4.7 (A:) Sobemovirus coat protein {Cocksfoot mottle
virus [TaxId: 40979]}
Length = 192
Score = 23.8 bits (51), Expect = 7.0
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 13 AVNDDQVKPRSLRFTWSMKTTSSRDPNEIMA 43
A +P+ + + ++ D + M
Sbjct: 41 AKAYALWRPKHWEIVYLPRCSTQTDGSIEMG 71
>d2tbva_ b.121.4.7 (A:) Tombusvirus coat protein {TBSV (Tomato
bushy stunt virus) [TaxId: 12145]}
Length = 287
Score = 23.7 bits (51), Expect = 7.4
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 13 AVNDDQVKPRSLRFTWSMKTTSS 35
A N DQ S+ + ++
Sbjct: 49 ASNFDQYSFNSVVLDYVPLCGTT 71
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
(Zea mays) [TaxId: 4577]}
Length = 338
Score = 23.6 bits (50), Expect = 8.7
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 42 MAEIRKVL-------DANNCDYEQRERFLLLCVHGDP 71
A + VL + N + R+RF+L HG
Sbjct: 36 CAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCM 72
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH
{Bacillus coagulans [TaxId: 1398]}
Length = 356
Score = 23.5 bits (50), Expect = 9.4
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 40 EIMAEIRKVLDA 51
E+M +VL
Sbjct: 16 EVMDAAIRVLKT 27
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermus thermophilus [TaxId: 274]}
Length = 345
Score = 23.6 bits (50), Expect = 10.0
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 40 EIMAEIRKVLDA 51
E+ KVL A
Sbjct: 14 EVTEAALKVLRA 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.395
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 436,945
Number of extensions: 18103
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 28
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)