BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2646
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 199 bits (505), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 92/113 (81%), Positives = 101/113 (89%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL+EIDRYA +NVNKLLVG
Sbjct: 69 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK D T+KK VDY AKE+AD L IPFLETSAKN NVEQ+F+TMA EIKKR+
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 198 bits (504), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 92/113 (81%), Positives = 101/113 (89%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL+EIDRYA +NVNKLLVG
Sbjct: 52 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 111
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK D T+KK VDY AKE+AD L IPFLETSAKN NVEQ+F+TMA EIKKR+
Sbjct: 112 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 198 bits (504), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 92/113 (81%), Positives = 101/113 (89%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL+EIDRYA +NVNKLLVG
Sbjct: 69 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 128
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK D T+KK VDY AKE+AD L IPFLETSAKN NVEQ+F+TMA EIKKR+
Sbjct: 129 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 198 bits (503), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 92/113 (81%), Positives = 101/113 (89%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL+EIDRYA +NVNKLLVG
Sbjct: 59 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 118
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK D T+KK VDY AKE+AD L IPFLETSAKN NVEQ+F+TMA EIKKR+
Sbjct: 119 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 198 bits (503), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 92/113 (81%), Positives = 101/113 (89%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL+EIDRYA +NVNKLLVG
Sbjct: 78 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 137
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK D T+KK VDY AKE+AD L IPFLETSAKN NVEQ+F+TMA EIKKR+
Sbjct: 138 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 190
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 198 bits (503), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 92/113 (81%), Positives = 101/113 (89%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL+EIDRYA +NVNKLLVG
Sbjct: 59 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 118
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK D T+KK VDY AKE+AD L IPFLETSAKN NVEQ+F+TMA EIKKR+
Sbjct: 119 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 194 bits (494), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 91/113 (80%), Positives = 100/113 (88%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL+EIDRYA +NVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
K D T+KK VDY AKE+AD L IPFLETSAKN NVEQ+F+TMA EIKKR+
Sbjct: 121 IKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 173
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 193 bits (491), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 90/113 (79%), Positives = 100/113 (88%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE++ N+KQWL+EIDRYA +NVNKLLVG
Sbjct: 62 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 121
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK+D T+KK VD AKE+AD L IPFLETSAKN NVEQAF+TMA EIKKR+
Sbjct: 122 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 193 bits (490), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 90/113 (79%), Positives = 100/113 (88%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE++ N+KQWL+EIDRYA +NVNKLLVG
Sbjct: 62 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 121
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK+D T+KK VD AKE+AD L IPFLETSAKN NVEQAF+TMA EIKKR+
Sbjct: 122 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 192 bits (488), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 91/112 (81%), Positives = 98/112 (87%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL+EIDRYA +NVNKLLVG
Sbjct: 86 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 145
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
NK D T+KK VDY AKE+AD L IPFLETSAKN NVEQ+F T A EIKKR
Sbjct: 146 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 176 bits (447), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/148 (59%), Positives = 107/148 (72%), Gaps = 6/148 (4%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRG+HGII+VYD TDQE+FN +K WL+EIDRYA V KLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK---DE 140
NK D K+ V+Y VAKE+AD K+PFLETSA + NVE AFLTMA +IK+ +++ +E
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE 180
Query: 141 KPSSESDAKKLNLNSGKPVDAPRSGGCC 168
+ D +NL K +GGCC
Sbjct: 181 TTQKKEDKGNVNL---KGQSLTNTGGCC 205
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/148 (58%), Positives = 106/148 (71%), Gaps = 5/148 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRG+HGII+VYD TDQE+FN +K WL+EIDRYA V KLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK---DE 140
NK D K+ V+Y VAKE+AD K+PFLETSA + NVE AFLTMA +IK+ +++ +E
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE 180
Query: 141 KPSSESDAKKLNLNSGKPVDAPRSGGCC 168
+ D +NL + GGCC
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNT--GGGCC 206
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 170 bits (430), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 93/113 (82%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGII+VYD TD+++F+N+KQW++EIDRYA +NVNKLLVG
Sbjct: 62 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVG 121
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK D SK+ V +E AD I F+ETSAKN NVEQAF TMA EIKKRV
Sbjct: 122 NKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 168 bits (426), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 91/111 (81%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRG+HGII+VYD TDQE+FN +K WL+EIDRYA V KLLVG
Sbjct: 74 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 133
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D K+ V+Y VAKE+AD K+PFLETSA + NVE AFLTMA +IK+
Sbjct: 134 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITS+YYRG HG+IVVYD T E+F N+K+WL EI++ CD+V ++LVG
Sbjct: 62 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-NCDDVCRILVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139
NKND +K V+ + A ++A + I ETSAK NVE+ F TE+ R KD
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF-NCITELVLRAKKD 175
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/67 (86%), Positives = 63/67 (94%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL+EIDRYA +NVNKLLVG
Sbjct: 51 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 110
Query: 84 NKNDQTS 90
NK D T+
Sbjct: 111 NKCDLTT 117
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 126 bits (316), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTIT++YYRGA GII+VYD TD+ TF N+KQW + ++ +A D LLVG
Sbjct: 56 IWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG 115
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK+D ++ Q + A L IPF+E+SAKN NV + F T+A I++++
Sbjct: 116 NKSDMETRVVTADQ-GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 125 bits (315), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQERFRTIT++YYRGA GII+VYD TD+ TF N+KQW + ++ +A D LLVG
Sbjct: 73 LWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG 132
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK+D + + V + A L IPF+E+SAKN NV + F T+A I++++
Sbjct: 133 NKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQERFRTIT++YYRGA GII+VYD TD+ TF N+KQW + ++ +A D LLVG
Sbjct: 60 LWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG 119
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK+D ++ Q + A L IPF+E+SAKN NV + F T+A I++++
Sbjct: 120 NKSDMETRVVTADQ-GEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTIT++YYRGA GII+VYD TD+ TF N+KQW + ++ +A D LLVG
Sbjct: 56 IWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVG 115
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK+D + + V + A L IPF+E+SAKN NV + F T+A I++++
Sbjct: 116 NKSDXET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 89/126 (70%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
R + IWDTAGQERFRTIT++YYRGA GI++VYD T++++F+N++ W+ I+ +A +V
Sbjct: 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE 115
Query: 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138
K+++GNK D K+ V + ++ A I F+ETSAK NVE AF T+A +IK ++ K
Sbjct: 116 KMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 175
Query: 139 DEKPSS 144
+ K ++
Sbjct: 176 NWKATA 181
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQERFRTIT++YYRGA GII+VYD TD+ TF N+KQW + ++ +A D LLVG
Sbjct: 56 LWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG 115
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK+D + + V + A L IPF+E+SAKN NV + F T+A I++++
Sbjct: 116 NKSDXET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 122 bits (307), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 85/120 (70%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
R + IWDTAGQERFRTIT++YYRGA GI++VYD T++++F+N++ W+ I+ +A +V
Sbjct: 54 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE 113
Query: 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138
K+++GNK D K+ V + ++ A I F+ETSAK NVE AF T+A +IK ++ K
Sbjct: 114 KMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 119 bits (299), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 80/115 (69%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQERFR++T +YYR AH ++++YD T++ +F+N++ WL EI YA +V +L+G
Sbjct: 64 MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 123
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138
NK D ++ V + ++ A +PF+ETSAK G NV+ AF +A E+K+R K
Sbjct: 124 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 87/128 (67%), Gaps = 1/128 (0%)
Query: 9 TLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEE 68
T++ + + R + IWDTAGQERFRTIT SYYR A+G I+ YD T + +F ++ W+E+
Sbjct: 67 TMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIED 126
Query: 69 IDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIP-FLETSAKNGANVEQAFLT 127
+ +YA N+ +LL+GNK+D + + V A+ A+H I +ETSAK+ +NVE+AFL
Sbjct: 127 VRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR 186
Query: 128 MATEIKKR 135
+ATE+ R
Sbjct: 187 VATELIMR 194
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 79/113 (69%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQE FR+IT SYYRGA G ++VYD T +ETFN+L WLE+ +++ N+ +L+G
Sbjct: 74 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG 133
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK+D S++ V + + +A + F+ETSAK NVE+AF+ A EI +++
Sbjct: 134 NKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 115 bits (289), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 73/107 (68%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
R + IWDTAGQER+RTIT++YYRGA G I++YD T++E+FN ++ W +I Y+ DN
Sbjct: 53 RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ 112
Query: 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAF 125
LLVGNK D ++ V + ++ ADHL F E SAK+ NV+Q F
Sbjct: 113 VLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 74/111 (66%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+ ++ YYRGA IVVYD T++E+F K W++E+ R A N+ L G
Sbjct: 59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG 118
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D +K+AVD+Q A+ YAD + F+ETSAK NV + F+ +A ++ K
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 74/111 (66%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+ ++ YYRGA IVVYD T++E+F K W++E+ R A N+ L G
Sbjct: 59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG 118
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D +K+AVD+Q A+ YAD + F+ETSAK NV + F+ +A ++ K
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 74/111 (66%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+ ++ YYRGA IVVYD T++E+F K W++E+ R A N+ L G
Sbjct: 60 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG 119
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D +K+AVD+Q A+ YAD + F+ETSAK NV + F+ +A ++ K
Sbjct: 120 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 74/111 (66%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+ ++ YYRGA IVVYD T++E+F K W++E+ R A N+ L G
Sbjct: 59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG 118
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D +K+AVD+Q A+ YAD + F+ETSAK NV + F+ +A ++ K
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 74/111 (66%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+ ++ YYRGA IVVYD T++E+F K W++E+ R A N+ L G
Sbjct: 59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG 118
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D +K+AVD+Q A+ YAD + F+ETSAK NV + F+ +A ++ K
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 74/111 (66%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+ ++ YYRGA IVVYD T++E+F K W++E+ R A N+ L G
Sbjct: 59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG 118
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D +K+AVD+Q A+ YAD + F+ETSAK NV + F+ +A ++ K
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 74/111 (66%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+ ++ YYRGA IVVYD T++E+F K W++E+ R A N+ L G
Sbjct: 59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG 118
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D +K+AVD+Q A+ YAD + F+ETSAK NV + F+ +A ++ K
Sbjct: 119 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 79/112 (70%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQE FR+IT SYYRGA G ++VYD T ++TFN+L WLE+ +++ N+ +L+G
Sbjct: 63 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIG 122
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
NK+D S++ V + + +A + F+ETSAK +NVE+AF+ A EI ++
Sbjct: 123 NKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 112 bits (281), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 76/109 (69%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFR+IT SYYR A+ +I+ YD T +E+F L +WL EI++YA + V +LVG
Sbjct: 79 IWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 138
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
NK D ++ V Q A+E+++ + +LETSAK NVE+ FL +A +
Sbjct: 139 NKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 72/109 (66%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+ ++ YYRGA IVVYD T+ +TF K W++E+ R A N+ L G
Sbjct: 58 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAG 117
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
NK D SK+AV++Q A+ YAD + F+ETSAK NV + F+ +A ++
Sbjct: 118 NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 71/107 (66%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
R + IWDTAG ER+RTIT++YYRGA G I+ YD T++E+FN ++ W +I Y+ DN
Sbjct: 56 RIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQ 115
Query: 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAF 125
LLVGNK D ++ V + ++ ADHL F E SAK+ NV+Q F
Sbjct: 116 VLLVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 74/117 (63%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFR++T SYYRGA G ++VYD T +ET+N+L WL + A N+ +L G
Sbjct: 78 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 137
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDE 140
NK D ++ V + A +A ++ FLETSA G NVE+AFL A I ++ E
Sbjct: 138 NKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGE 194
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 72/109 (66%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+ ++ YYRGA IVVYD T+ +TF K W++E+ R A N+ L G
Sbjct: 56 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAG 115
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
NK D SK+AV++Q A+ YAD + F+ETSAK NV + F+ +A ++
Sbjct: 116 NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 72/111 (64%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+ ++ YYRGA IVVYD T+QETF K W++E+ R A ++ L G
Sbjct: 61 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D +K+ V+Y+ A+ YAD + F+ETSAK NV FL +A ++ K
Sbjct: 121 NKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 171
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERF +ITS+YYR A GII+VYD T +ETF++L +W++ ID+YA ++ LLVG
Sbjct: 79 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK D + + + Q +++A + + F E SAK+ NV++ FL + +I K++
Sbjct: 139 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 72/111 (64%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+ ++ YYRGA IVVYD T++E+F K W++E+ R A N+ L G
Sbjct: 60 IWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG 119
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D +K+AVD+Q A+ YAD + F ETSAK NV + F +A ++ K
Sbjct: 120 NKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 73/111 (65%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAG ER+ ++ YYRGA IVVYD T++E+F K W++E+ R A N+ L G
Sbjct: 58 IWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSG 117
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D +K+AVD+Q A+ YAD + F+ETSAK NV + F+ +A ++ K
Sbjct: 118 NKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 72/109 (66%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFR +T SYYRGA G ++VYD T + T+N+L WL + N +L+G
Sbjct: 68 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
NK D +++ V Y+ AK++A+ + FLE SAK G NVE AFL A +I
Sbjct: 128 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 74/117 (63%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFR++T SYYRGA G ++VYD T +ET+N L WL + A N+ +L G
Sbjct: 63 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDE 140
NK D + + V + A +A ++ FLETSA G NVE+AF+ A +I ++ E
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 179
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 76/111 (68%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+R ITS+YYRGA G ++VYD T+ N+++WL+E+ +A N+ +LVG
Sbjct: 73 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 132
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK+D +AV A+ +A+ + F+ETSA + NVE AF T+ TEI +
Sbjct: 133 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 183
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 75/109 (68%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+R ITS+YYRGA G ++VYD T+ N+++WL+E+ +A N+ +LVG
Sbjct: 82 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 141
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
NK+D +AV A+ +A+ + F+ETSA + NVE AF T+ TEI
Sbjct: 142 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 80/128 (62%), Gaps = 9/128 (7%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+R ITS+YYRGA G ++VYD T+ N+++WL+E+ +A N+ +LVG
Sbjct: 58 IWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 117
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK--------- 134
NK+D +AV A+ +A+ + F+ETSA + NVE+AF + TEI +
Sbjct: 118 NKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIAD 177
Query: 135 RVTKDEKP 142
R DE P
Sbjct: 178 RAAHDESP 185
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 109 bits (272), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 71/109 (65%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAG ER+ ++ YYRGA IVVYD T+ +TF K W++E+ R A N+ L G
Sbjct: 58 IWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAG 117
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
NK D SK+AV++Q A+ YAD + F+ETSAK NV + F+ +A ++
Sbjct: 118 NKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 109 bits (272), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQ RFR +T SYYRGA G ++VYD T + T+N+L WL + N +L+G
Sbjct: 83 IWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 142
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK D +++ V Y+ AK++A+ + FLE SAK G NVE AFL A +I + +
Sbjct: 143 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 195
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 109 bits (272), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 79/121 (65%), Gaps = 5/121 (4%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+R ITS+YYRGA G ++VYD T + +F N+++WL+E+ A N+ LLVG
Sbjct: 61 IWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI-----KKRVTK 138
NK+D + ++ A +YA K+ F+ETSA NVE AF + EI KK+ TK
Sbjct: 121 NKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQATK 180
Query: 139 D 139
+
Sbjct: 181 N 181
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 88/156 (56%), Gaps = 9/156 (5%)
Query: 15 EERTRTLIV--------IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWL 66
E TRTL + IWDTAGQER+R ITS+YYRGA G ++VYD + ++ N WL
Sbjct: 49 EFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWL 108
Query: 67 EEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFL 126
E+ A DNV L+GNK+D +AV + +K +A ++ F ETSA N NV++AF
Sbjct: 109 SELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE 168
Query: 127 TMATEIKKRVTKDEKPSSESDAKKLNLNSGKPVDAP 162
+ I ++V+K + +S A N N + P
Sbjct: 169 ELINTIYQKVSKHQMDLGDSSANG-NANGASAPNGP 203
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 74/109 (67%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAG ER+R ITS+YYRGA G ++VYD T+ N+++WL+E+ +A N+ +LVG
Sbjct: 82 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 141
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
NK+D +AV A+ +A+ + F+ETSA + NVE AF T+ TEI
Sbjct: 142 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 75/111 (67%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAG ER+R ITS+YYRGA G ++VYD T+ N+++WL+E+ +A N+ +LVG
Sbjct: 61 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK+D +AV A+ +A+ + F+ETSA + NVE AF T+ TEI +
Sbjct: 121 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 171
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 70/107 (65%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
R + IWDTAGQER+RTIT++YYRGA G I++YD T++E+FN ++ W +I Y+ DN
Sbjct: 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ 130
Query: 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAF 125
+LVGNK D ++ V + + A+ L F E SAK +V QAF
Sbjct: 131 VILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82
+WDTAGQERFR++T++++R A G ++++D T Q++F N++ W+ ++ A C+N + +L+
Sbjct: 88 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLI 147
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
GNK D ++ V+ + A+E AD IP+ ETSA G NVE+A T+ I KR+
Sbjct: 148 GNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 71/109 (65%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFR++T SYYRGA G ++VYD T +ET+N L WL + A N+ +L G
Sbjct: 64 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 123
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
NK D + + V + A +A ++ FLETSA G +VE+AF+ A +I
Sbjct: 124 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 73/109 (66%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAG ER+R ITS+YYRGA G ++VYD T+ N+++WL+E+ +A N+ LVG
Sbjct: 58 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVG 117
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
NK+D +AV A+ +A+ + F+ETSA + NVE AF T+ TEI
Sbjct: 118 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 73/109 (66%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAG ER+R ITS+YYRGA G ++VYD T+ N+++WL+E+ +A N+ LVG
Sbjct: 64 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVG 123
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
NK+D +AV A+ +A+ + F+ETSA + NVE AF T+ TEI
Sbjct: 124 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 68/107 (63%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
R + IWDTAGQER+RTIT++YYRGA G +++YD +QE+F ++ W +I Y+ DN
Sbjct: 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ 129
Query: 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAF 125
+LVGNK D ++ V + + AD L F E SAK NV+Q F
Sbjct: 130 VILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 73/115 (63%), Gaps = 4/115 (3%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+IWDTAGQERFR + YYRG+ I+VYD T +ETF+ LK W+ E+ ++ ++ +
Sbjct: 56 FLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAI 115
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
GNK D T + V + AK+YAD + F+ETSAKN N+ + F+ EI +R+
Sbjct: 116 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI----EISRRI 166
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 86/132 (65%), Gaps = 8/132 (6%)
Query: 15 EERTRTLIV--------IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWL 66
E TRT+++ IWDTAG ER+R ITS+YYRGA G ++V+D T +T+ +++WL
Sbjct: 61 EFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWL 120
Query: 67 EEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFL 126
+E+ +A + +LVGNK+D + + V + A+ +A++ + FLETSA + NVE AF
Sbjct: 121 KELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE 180
Query: 127 TMATEIKKRVTK 138
T+ EI +V+K
Sbjct: 181 TVLKEIFAKVSK 192
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 82/123 (66%), Gaps = 6/123 (4%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
RT++ +WDTAGQERFR+I SY+R A G++++YD T +++F N+++W++ I+ A + V
Sbjct: 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP 135
Query: 79 KLLVGNKNDQTSKKAVDYQ--VAKEYADHLKIP----FLETSAKNGANVEQAFLTMATEI 132
+LVGNK D A + Q V + + L + F ETSAK+G+N+ +A L +A E+
Sbjct: 136 IMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
Query: 133 KKR 135
KKR
Sbjct: 196 KKR 198
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 70/109 (64%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAG ERFR++T SYYRGA G ++VYD T +ET+N L WL + A N+ +L G
Sbjct: 61 IWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
NK D + + V + A +A ++ FLETSA G +VE+AF+ A +I
Sbjct: 121 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 86/132 (65%), Gaps = 8/132 (6%)
Query: 15 EERTRTLIV--------IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWL 66
E TRT+++ IWDTAG ER+R ITS+YYRGA G ++V+D T +T+ +++WL
Sbjct: 46 EFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWL 105
Query: 67 EEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFL 126
+E+ +A + +LVGNK+D + + V + A+ +A++ + FLETSA + NVE AF
Sbjct: 106 KELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE 165
Query: 127 TMATEIKKRVTK 138
T+ EI +V+K
Sbjct: 166 TVLKEIFAKVSK 177
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%), Gaps = 5/142 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82
+WDTAG ERFR++T++++R A G ++++D T Q++F N++ W+ ++ A C+N + +L+
Sbjct: 74 LWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLI 133
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR----VTK 138
GNK D ++ V+ + A+E A+ IP+ ETSA G NVE++ T+ I KR V K
Sbjct: 134 GNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCVEK 193
Query: 139 DEKPSSESDAKKLNLNSGKPVD 160
+ P + + L+ KP +
Sbjct: 194 TQVPDTVNGGNSGKLDGEKPAE 215
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 79/116 (68%), Gaps = 1/116 (0%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82
+WDTAG ERFR++T++++R A G ++++D T Q++F N++ W+ ++ A C+N + +L+
Sbjct: 74 LWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLI 133
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138
GNK D ++ V+ + A+E A+ IP+ ETSA G NVE++ T+ I KR+ K
Sbjct: 134 GNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 72/115 (62%), Gaps = 4/115 (3%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+IWDTAG ERFR + YYRG+ I+VYD T +ETF+ LK W+ E+ ++ ++ +
Sbjct: 57 FLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAI 116
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
GNK D T + V + AK+YAD + F+ETSAKN N+ + F+ EI +R+
Sbjct: 117 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI----EISRRI 167
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 72/111 (64%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+IWDTAGQERF ++ YYRG+ ++VYD T Q++F LK+W++E+ + +N+ +
Sbjct: 74 FLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAI 133
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
GNK D + + V + AKEYA+ + +ETSAKN N+E+ F ++ +I
Sbjct: 134 AGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 74/123 (60%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAG ER+R ITS+YYRGA G ++VYD + ++ N WL E+ A DNV L+G
Sbjct: 63 IWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIG 122
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D +AV AK +A ++ F ETSA N NV++AF + I + V+K +
Sbjct: 123 NKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDL 182
Query: 144 SES 146
S S
Sbjct: 183 SGS 185
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNV 77
R + +WDTAG ERFR++T++++R A G ++++D T++++F N++ W+ ++ +A +N
Sbjct: 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128
Query: 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137
+ +L GNK+D ++AV + A+E A+ IP+ ETSA NG N+ A + I KR+
Sbjct: 129 DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRME 188
Query: 138 K 138
+
Sbjct: 189 R 189
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82
+WDTAG ERFR++T++++R A G ++ +D T Q++F N++ W ++ A C+N + +L+
Sbjct: 74 LWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLI 133
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138
GNK D ++ V+ + A+E A+ IP+ ETSA G NVE++ T+ I KR K
Sbjct: 134 GNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXEK 189
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82
+WDTAG ERFR++T++++R A G ++ +D T Q++F N++ W ++ A C+N + +L+
Sbjct: 74 LWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLI 133
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138
GNK D ++ V+ + A+E A+ IP+ ETSA G NVE++ T+ I KR K
Sbjct: 134 GNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXEK 189
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 5/120 (4%)
Query: 19 RTLIVIWDTAGQERFR-TITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDN- 76
R I +WDTAGQERFR ++ YYR H ++ VYD T+ +F++L W+EE ++ N
Sbjct: 68 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND 127
Query: 77 VNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKN---GANVEQAFLTMATEIK 133
+ ++LVGNK D S V +A+++AD +P ETSAKN +VE F+T+A ++K
Sbjct: 128 IPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 70/112 (62%), Gaps = 2/112 (1%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDN-VNKL 80
+ IWDTAGQERFRT+T SYYRGA G+I+VYD T ++TF L WL E++ Y N +
Sbjct: 66 LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNX 125
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
LVGNK D+ +++ VD ++A F+E SAK V+ AF + +I
Sbjct: 126 LVGNKIDKENRE-VDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 5/120 (4%)
Query: 19 RTLIVIWDTAGQERFR-TITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDN- 76
R I +WDTAGQERFR ++ YYR H ++ VYD T+ +F++L W+EE ++ N
Sbjct: 77 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAND 136
Query: 77 VNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKN---GANVEQAFLTMATEIK 133
+ ++LVGNK D S V +A+++AD P ETSAKN +VE F T+A ++K
Sbjct: 137 IPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLK 196
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 5/154 (3%)
Query: 15 EERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC 74
E+RT L +WDTAG ERFR++ SY R + +VVYD T+ +F +W++++
Sbjct: 58 EDRTIRL-QLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 116
Query: 75 DNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+V +LVGNK D K+ V + + A L + F+ETSAK G NV+Q F +A +
Sbjct: 117 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 176
Query: 135 RVTKDEKPSSESDAKKLNLNSGKPVDAPRSGGCC 168
E S +++ KP + P S G C
Sbjct: 177 M----ESTQDRSREDMIDIKLEKPQEQPVSEGGC 206
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+ ++ YYRGA I+V+D T+Q +F K+W++E+ N+ L G
Sbjct: 65 IWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG 124
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK+D + V + A+ YA + F+ETSAK NV++ F +A + +
Sbjct: 125 NKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 5/154 (3%)
Query: 15 EERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC 74
E+RT L +WDTAG ERFR++ SY R + +VVYD T+ +F +W++++
Sbjct: 61 EDRTVRL-QLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 119
Query: 75 DNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+V +LVGNK D K+ V + + A L + F+ETSAK G NV+Q F +A +
Sbjct: 120 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 179
Query: 135 RVTKDEKPSSESDAKKLNLNSGKPVDAPRSGGCC 168
E S +++ KP + P S G C
Sbjct: 180 M----ESTQDRSREDMIDIKLEKPQEQPVSEGGC 209
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 15 EERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC 74
E+RT L +WDTAGQERFR++ SY R + +VVYD T+ +F+ +W++++
Sbjct: 59 EDRTVRL-QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG 117
Query: 75 DNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
+V +LVGNK D + K+ V + + A L + F+ETSAK G NV+Q F +A +
Sbjct: 118 SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 15 EERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC 74
E+RT L +WDTAGQERFR++ SY R + +VVYD T+ +F +W++++
Sbjct: 47 EDRTVRL-QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERG 105
Query: 75 DNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
+V +LVGNK D K+ + + ++ A L + F+ETSAK G NV+Q F +A+ +
Sbjct: 106 SDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Query: 15 EERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC 74
E+RT L +WDTAGQERFR++ SY R + +VVYD T+ +F +W++++
Sbjct: 51 EDRTIRL-QLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG 109
Query: 75 DNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
+V +LVGNK D K+ V + + A L + F+ETSAK G NV+Q F +A +
Sbjct: 110 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 66/110 (60%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
R + IWDTAGQERF + YYR ++G I+VYD TD+++F +K W++E+ + + +
Sbjct: 68 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC 127
Query: 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTM 128
+VGNK D ++ V Q A+ YA+ + TSAK +E+ FL +
Sbjct: 128 LCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 177
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 66/110 (60%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
R + IWDTAGQERF + YYR ++G I+VYD TD+++F +K W++E+ + + +
Sbjct: 54 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC 113
Query: 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTM 128
+VGNK D ++ V Q A+ YA+ + TSAK +E+ FL +
Sbjct: 114 LCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 66/110 (60%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
R + IWDTAGQERF + YYR ++G I+VYD TD+++F +K W++E+ + + +
Sbjct: 54 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC 113
Query: 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTM 128
+VGNK D ++ V Q A+ YA+ + TSAK +E+ FL +
Sbjct: 114 LCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
Query: 15 EERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC 74
E+RT L +WDTAGQERFR++ SY R + +VVYD T+ +F +W++++
Sbjct: 46 EDRTVRL-QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 104
Query: 75 DNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
+V +LVGNK D K+ V + + A L + F+ETSAK G NV+Q F +A +
Sbjct: 105 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 71/114 (62%), Gaps = 10/114 (8%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK---- 79
+WDTAGQERF+++ ++YRGA ++VYD T+ +F N+K W +E +A NVN
Sbjct: 62 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA--NVNSPETF 119
Query: 80 --LLVGNKND-QTSKKAVDYQVAKEYADHL-KIPFLETSAKNGANVEQAFLTMA 129
+++GNK D + SKK V + A+E A L IP TSAKN NV+ AF +A
Sbjct: 120 PFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIA 173
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 15 EERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC 74
E+RT L +WDTAG ERFR++ SY R + +VVYD T+ +F +W++++
Sbjct: 51 EDRTVRL-QLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG 109
Query: 75 DNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
+V +LVGNK D K+ V + + A L + F+ETSAK G NV+Q F +A +
Sbjct: 110 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERF ++ YYR A +VVYD T ++F + W++E+ A ++ LVG
Sbjct: 56 IWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVG 115
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK----IPFLETSAKNGANVEQAFLTMATEI 132
NK D + + +VA+E + L + F ETSAK G NV FL + +I
Sbjct: 116 NKIDXLQEGG-ERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 64/109 (58%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQERFR++ SY R + IVVYD T++++F N +W+++I +V LVG
Sbjct: 54 LWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVG 113
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
NK D + V Y+ + A F ETSAK G N++ F A+++
Sbjct: 114 NKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACD-NVNKL 80
I I DTAGQE + I +Y+R G + V+ T+ E+F + E+I R D NV L
Sbjct: 54 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 113
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
LVGNK+D K+ V + AK AD + ++ETSAK ANV++ F + EI+ R
Sbjct: 114 LVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACD-NVNKL 80
I I DTAGQE + I +Y+R G + V+ T+ E+F + E+I R D NV L
Sbjct: 64 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 123
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139
LVGNK+D K+ V + AK A+ + ++ETSAK ANV++ F + EI+ R +D
Sbjct: 124 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 182
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACD-NVNKL 80
I I DTAGQE + I +Y+R G + V+ T+ E+F + E+I R D NV L
Sbjct: 68 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 127
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139
LVGNK+D K+ V + AK A+ + ++ETSAK ANV++ F + EI+ R +D
Sbjct: 128 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 186
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACD-NVNKL 80
I I DTAGQE + I +Y+R G + V+ T+ E+F + E+I R D NV L
Sbjct: 56 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 115
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139
LVGNK+D K+ V + AK A+ + ++ETSAK ANV++ F + EI+ R +D
Sbjct: 116 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 174
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER+ +I YYRGA IVV+D ++ T + K W+ ++ N +LV
Sbjct: 97 IWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYIIILVA 154
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK D+ +K VD ++YA + F++TSAK G N++ F +A EI K +
Sbjct: 155 NKIDK-NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC----DNVNK 79
IWDTAGQERF+++ ++YRGA ++V+D T TF L W +E A +N
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139
+++GNK D +++ + IP+ ETSAK NVEQAF T+A K+ T+
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 140 EKPSSESDAKKLNLN 154
E + + KL+ N
Sbjct: 181 ELYNEFPEPIKLDKN 195
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC----DNVNK 79
IWDTAGQERF+++ ++YRGA ++V+D T TF L W +E A +N
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139
+++GNK D +++ + IP+ ETSAK NVEQAF T+A K+ T+
Sbjct: 121 VVLGNKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 140 EKPSSESDAKKLNLN 154
E + + KL+ N
Sbjct: 181 ELYNEFPEPIKLDKN 195
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC----DNVNK 79
IWDTAGQERF+++ ++YRGA ++V+D T TF L W +E A +N
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139
+++GNK D +++ + IP+ ETSAK NVEQAF T+A K+ T+
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 140 E 140
E
Sbjct: 181 E 181
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++ +
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRK 170
Query: 140 EKPSSES 146
P ES
Sbjct: 171 LNPPDES 177
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACD-NVNKL 80
I I DTAG E + I +Y+R G + V+ T+ E+F + E+I R D NV L
Sbjct: 56 IDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 115
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139
LVGNK+D K+ V + AK A+ + ++ETSAK ANV++ F + EI+ R +D
Sbjct: 116 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 174
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC----DNVNK 79
IWDTAG ERF+++ ++YRGA ++V+D T TF L W +E A +N
Sbjct: 61 IWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139
+++GNK D +++ + IP+ ETSAK NVEQAF T+A K+ T+
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 140 EKPSSESDAKKLNLN 154
E + + KL+ N
Sbjct: 181 ELYNEFPEPIKLDKN 195
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ + E+I R ++V
Sbjct: 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK+D S+ VD + A++ A IPF+ETSAK V+ AF T+ EI+K
Sbjct: 113 VLVGNKSDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ + E+I R ++V
Sbjct: 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK+D S+ VD + A++ A IPF+ETSAK V+ AF T+ EI+K
Sbjct: 113 VLVGNKSDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ + E+I R ++V
Sbjct: 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
+LVGNK+D S+ VD + A++ A IPF+ETSAK V+ AF T+ EI+K
Sbjct: 113 VLVGNKSDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK+D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKSD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK+D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKSD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ + E+I R D+V
Sbjct: 70 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPM 129
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D ++ VD + A E A IPF+ETSAK VE AF T+ EI++
Sbjct: 130 VLVGNKCDLPTR-TVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81
+++WDTAGQE F IT +YYRGA ++V+ TD+E+F + W E++ D + L
Sbjct: 56 LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTAL 114
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMA 129
V NK D + + A+ A LK+ F TS K NV + F +A
Sbjct: 115 VQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 58 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 117
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 118 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 171
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 57 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 116
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 117 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 57 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 116
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 117 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 59 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 118
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 119 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 172
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ + E+I R ++V
Sbjct: 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
+LVGNK D S+ VD + A++ A IPF+ETSAK V+ AF T+ EI+K
Sbjct: 113 VLVGNKCDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC--DNVNK 79
I I DTAG E + I +Y+R G ++V+ T+ E+F ++ E+I R D +
Sbjct: 53 IDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPL 112
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
L+VGNK+D ++ V + A+ A+ + ++ETSAK ANV++ F + EI+ +
Sbjct: 113 LVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC--DNVNK 79
I I DTAG E + I +Y+R G ++V+ T+ E+F ++ E+I R D +
Sbjct: 57 IDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPL 116
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
L+VGNK+D ++ V + A+ A+ + ++ETSAK ANV++ F + EI+ +
Sbjct: 117 LVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGN+ D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNRCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DT GQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA----CDNVNK 79
IWDTAGQERFR++ + +YRG+ ++ + D ++F NL W +E YA ++
Sbjct: 64 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 123
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAF 125
+++GNK D ++ + D+ P+ ETSAK+ NV AF
Sbjct: 124 VILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTA QE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKXD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAG E + + Y R G + V+ + ++F ++ + E+I R ++V
Sbjct: 70 LLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 129
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
+LVGNK D S+ VD + A++ A IPF+ETSAK V+ AF T+ EI+K
Sbjct: 130 VLVGNKCDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 184
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTA QE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKXD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 6/107 (5%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA----CDNVNK 79
IWDTAGQERFR++ + +YRG+ ++ + D ++F NL W +E YA ++
Sbjct: 62 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 121
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYA-DHLKIPFLETSAKNGANVEQAF 125
+++GNK D S++ V + A+ + D+ P+ ETSAK+ NV AF
Sbjct: 122 VILGNKID-ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 64/107 (59%), Gaps = 6/107 (5%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA----CDNVNK 79
IWDTAGQERFR++ + +YRG+ ++ + D ++F NL W +E YA ++
Sbjct: 60 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 119
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYA-DHLKIPFLETSAKNGANVEQAF 125
+++GNK D S++ V + A+ + D+ P+ ETSAK+ NV AF
Sbjct: 120 VILGNKID-ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ E ++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREFRQ 165
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAG+E + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DT GQE + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAG E + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAGQE + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAG E + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 57 LLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 116
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 117 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA----CDNVNK 79
IWDTAGQERF+++ + +YRGA ++ + D+++F NL W +E YA ++
Sbjct: 60 IWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPF 119
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAF 125
+++GNK D+ ++ + ++ P+LETSAK+ NV AF
Sbjct: 120 VVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAG E + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAG E + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAG E + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAG E + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
L+ I DTAG E + + Y R G + V+ + ++F ++ Q+ E+I R D+V
Sbjct: 52 LLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D + + V+ + A++ A IP++ETSAK VE AF T+ EI++
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82
I DTAGQE F + Y R HG ++V+ D+++FN + + +I R D+ +LV
Sbjct: 61 ILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLV 120
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKP 142
GNK D S++ V A + + + E SAK NV++AF + ++K ++ P
Sbjct: 121 GNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQELPP 180
Query: 143 S 143
S
Sbjct: 181 S 181
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82
I DTAGQE F + Y R G ++V+ TD+ +F + ++ +I R D +L+
Sbjct: 57 ILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILI 116
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
GNK D ++ V + ++ A LK+ ++E SAK NV+QAF + I+K
Sbjct: 117 GNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQE+F + YY A I+++D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 63 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCG 121
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 122 NKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQE+F + YY A I+++D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 63 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCG 121
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 122 NKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQE+F + YY A I+++D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 56 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCG 114
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 115 NKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQE+F + YY A I+++D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 63 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCG 121
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 122 NKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQE+F + YY A I+++D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 63 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCG 121
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 122 NKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQE+F + YY A I+++D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 68 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCG 126
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 127 NKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQE+F + YY A I+++D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 63 VWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCG 121
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 122 NKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQE+F + YY A I+++D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 68 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCG 126
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 127 NKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQE+F + YY A I+++D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 63 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCG 121
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 122 NKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQE+F + YY A I+ +D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 63 VWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCG 121
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 122 NKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQE++ + YY A I+++D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 63 VWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCG 121
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 122 NKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
++ I DTAG E+F + Y + G +VY T Q TFN+L+ E+I R D+V
Sbjct: 54 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 113
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHL-KIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D ++ V + + A FLE+SAK+ NV + F + +I +
Sbjct: 114 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 169
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79
++ I DTAG E+F + Y + G +VY T Q TFN+L+ E+I R D+V
Sbjct: 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHL-KIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D ++ V + + A FLE+SAK+ NV + F + +I +
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAG E+F + YY A I+++D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 59 VWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCG 117
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 118 NKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAG E+F + YY A I+++D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 63 VWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCG 121
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 122 NKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAG E+F + YY A I+++D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 65 VWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCG 123
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 124 NKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAG E+F + YY A I+++D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 65 VWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCG 123
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 124 NKVDVKERKV----KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAG E+F + YY A I+++D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 57 VWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCG 115
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 116 NKVDVKERKV----KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 162
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAG E+F + YY A I+++D T + T+ N+ W ++ R C+N+ +L G
Sbjct: 58 VWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCG 116
Query: 84 NKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEI 132
NK D +K AK H K + + + SAK+ N E+ FL +A ++
Sbjct: 117 NKVDVKERKV----KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 163
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNV 77
+ ++ I DTAG E+F + Y + G +VY T Q TFN+L+ E+I R ++V
Sbjct: 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDV 109
Query: 78 NKLLVGNKNDQTSKKAVDYQVAKEYADH-LKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D ++ V + + A FLE+SAK+ NV + F + +I +
Sbjct: 110 PMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNV 77
+ ++ I DTAG E+F + Y + G +VY T Q TFN+L+ E+I R ++V
Sbjct: 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDV 109
Query: 78 NKLLVGNKNDQTSKKAVDYQVAKEYADH-LKIPFLETSAKNGANVEQAFLTMATEIKK 134
+LVGNK D ++ V + + A FLE+SAK+ NV + F + +I +
Sbjct: 110 PMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82
+ DTAGQE F + Y R G ++VY TD+ +F ++ ++ + I R ++ +LV
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGA-NVEQAFLTMATEIKKR 135
NK D + V KE A IP++ETSAK+ NV++ F + I+++
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82
+ DTAGQE F + Y R G ++VY TD+ +F ++ ++ + I R ++ +LV
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGA-NVEQAFLTMATEIKKR 135
NK D + V KE A IP++ETSAK+ NV++ F + I+++
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82
+ DTAGQE F + Y R G ++VY TD+ +F ++ ++ + I R ++ +LV
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGA-NVEQAFLTMATEIKKR 135
NK D + V KE A IP++ETSAK+ NV++ F + I+++
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82
+ DTAGQE F + Y R G ++VY TD+ +F ++ ++ + I R ++ +LV
Sbjct: 65 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 124
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGA-NVEQAFLTMATEIKKR 135
NK D + V KE A IP++ETSAK+ NV++ F + I+++
Sbjct: 125 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 178
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVN 78
+++ I DTAG E+F ++ Y + G I+VY +Q++F ++K ++I R + V
Sbjct: 51 SVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP 110
Query: 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAF 125
+LVGNK D S++ V + A+ PF+ETSAK+ V++ F
Sbjct: 111 VILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQE+ + YY GA G I+ +D T + T NL +W++E + ++
Sbjct: 65 VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCA 124
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMA 129
NK D +++ + ++ E + E SAK N FL +A
Sbjct: 125 NKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLA 170
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 24 IWDTAGQERFRTIT-SSYYRGAHGIIVVYDCTDQETFNN---LKQWLEEIDRYACDNVNK 79
I DTAGQE TI + R G ++VYD TD+ +F LK L+EI + NV
Sbjct: 80 ILDTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTL 135
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNG-ANVEQAFLTMATEIKKR 135
+LVGNK D + V + ++ A L F E SA G N+ + F + E+++R
Sbjct: 136 ILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNN-LKQWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + YRGA ++ + + ++ N LK+W+ E+ R+A NV +LV
Sbjct: 61 LWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLV 119
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKI----------------PFLETSAKNGANVEQAFL 126
G K D K ADH + ++E S+K NV+ F
Sbjct: 120 GTKLDLRDDKGY-------LADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFD 172
Query: 127 TMATEIKKRVTKDEKPSSESDAKKLNLNSGKPVDAPRSGGC 167
T + + + E P + ++ SG + + GGC
Sbjct: 173 TAIKVVLQPPRRKEVPRRRKNHRR----SGCSIASIVCGGC 209
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACD--NVNKLL 81
I DT G +F + H I+VY T +++ LK E+I D ++ +L
Sbjct: 55 ITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIML 114
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
VGNK D++ + V A+ A K F+ETSAK NV++ F + K+R
Sbjct: 115 VGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 168
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 26 DTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI-DRYACDNVNKLLVGN 84
DTAGQ+ + + S+ G HG ++VY T +F ++ +++ + + V +LVGN
Sbjct: 78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137
Query: 85 KNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
K D + ++ V K+ A+ F+E+SA+ + F + EI +
Sbjct: 138 KADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIAR 187
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDN---VN 78
+ + DTAG + ++ S Y+ G + I+V+D + E+F + K W E + D +
Sbjct: 75 LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134
Query: 79 KLLVGNKNDQTSKK-AVDYQVAKEYADHLKIPFLETSA-KNGANVEQAFLTMAT 130
+LV NK D ++ V +A+++A + F + SA G + + FL++AT
Sbjct: 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT 188
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY--ACDNVNKLL 81
I DT G +F + H I+V+ T +++ L + I + + +++ +L
Sbjct: 60 ITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVML 119
Query: 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMAT 130
VGNK D+T ++ VD + A+ A K F+ETSAK NV++ F + T
Sbjct: 120 VGNKCDET-QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKLLV 82
IWDTAGQ+ + + +Y A +++ +D T +F+N+ +W E++ + C V ++V
Sbjct: 86 IWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF-CKKVPIIVV 144
Query: 83 GNKNDQTSKKA------------VDYQVAKEYADHL-KIPFLETSAKNGANVEQAF 125
G K D K+ V Y +E A + + +LE SA+ NV F
Sbjct: 145 GCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK---L 80
IWD GQ + Y GA G+++VYD T+ ++F NL+ W + + + ++ +
Sbjct: 60 IWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVA 119
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132
LVGNK D + + + + SAK G +V F +A EI
Sbjct: 120 LVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 26 DTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI-DRYACDNVNKLLVGN 84
DTAGQ+ + +Y +G I+VY T ++F +K ++ D + +LVGN
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 85 KNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
K D ++ + Y+ K A+ FLE+SAK F + E +K
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 169
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 26 DTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-----L 80
DTAGQ+ + +Y +G I+VY T ++F +K I D V K +
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKV----IHGKLLDMVGKVQIPIM 115
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
LVGNK D ++ + Y+ K A+ FLE+SAK F + E +K
Sbjct: 116 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 169
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK 63
++P +K + I +WD GQ RFR++ Y RG I+ + D DQE K
Sbjct: 51 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK 110
Query: 64 QWLEE-IDRYACDNVNKLLVGNKND 87
L +D+ + L++GNK D
Sbjct: 111 NELHNLLDKPQLQGIPVLVLGNKRD 135
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 26 DTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-----L 80
DTAGQ+ + +Y +G I+VY T ++F +K I D V K +
Sbjct: 58 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKV----IHGKLLDMVGKVQIPIM 113
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
LVGNK D ++ + Y+ K A+ FLE+SAK F + E +K
Sbjct: 114 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 167
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 26 DTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-----L 80
DTAGQ+ + +Y +G I+VY T ++F +K I D V K +
Sbjct: 55 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKV----IHGKLLDMVGKVQIPIM 110
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
LVGNK D ++ + Y+ K A+ FLE+SAK F + E +K
Sbjct: 111 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 164
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK 63
++P +K + I +WD GQ RFR++ Y RG I+ + D DQE K
Sbjct: 60 MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASK 119
Query: 64 QWLEE-IDRYACDNVNKLLVGNKND 87
L +D+ + L++GNK D
Sbjct: 120 NELHNLLDKPQLQGIPVLVLGNKRD 144
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W E+ + C NV +
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII 113
Query: 81 LVGNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLT 127
LVGNK D + ++ V + ++ A+ + +LE SAK V + F
Sbjct: 114 LVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-E 172
Query: 128 MATEIKKRVTKDEK 141
MAT +V K+++
Sbjct: 173 MATRAGLQVRKNKR 186
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI--DRYACDNVNKLL 81
+WD GQ++ R + YY G G+I V DC D++ + +Q L I DR D + L+
Sbjct: 370 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILI 428
Query: 82 VGNKND 87
NK D
Sbjct: 429 FANKQD 434
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK 63
++P +K + I IWD GQ RFR++ Y RG + I+ + D D+E +
Sbjct: 51 MIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASR 110
Query: 64 QWLEE-IDRYACDNVNKLLVGNKND 87
L +D+ + L++GNK D
Sbjct: 111 NELHNLLDKPQLQGIPVLVLGNKRD 135
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + YRGA I+ + + ++ N+ K+W+ E+ YA V +LV
Sbjct: 60 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLV 118
Query: 83 GNKNDQTSKKA--VDYQVA--------KEYADHLKIP-FLETSAKNGANVEQAF 125
G K D K +D+ A +E + P ++E S+K+ NV+ F
Sbjct: 119 GTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI--DRYACDNVNKLL 81
+WD GQ++ R + YY G G+I V DC D++ + +Q L I DR D + L+
Sbjct: 61 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILI 119
Query: 82 VGNKND 87
NK D
Sbjct: 120 FANKQD 125
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI--DRYACDNVNKLL 81
+WD GQ++ R + YY G G+I V DC D++ + +Q L I DR D + L+
Sbjct: 60 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILI 118
Query: 82 VGNKND 87
NK D
Sbjct: 119 FANKQD 124
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 21/118 (17%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + YRGA ++ + + ++ N+ K+WL E+ YA + +LV
Sbjct: 58 LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLV 116
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIP---------------FLETSAKNGANVEQAF 125
G K D K Q K++ I +LE S+K NV+ F
Sbjct: 117 GTKLDLRDDK----QFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W E+ + C NV +
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII 113
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLK-------------IPFLETSAKNGANVEQAFLT 127
LVGNK D + + ++AK + +K ++E SAK V + F
Sbjct: 114 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-E 172
Query: 128 MATEIKKRVTKDEKPSS 144
MAT + + +K S
Sbjct: 173 MATRAALQARRGKKKSG 189
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI--DRYACDNVNKLL 81
+WD GQ++ R + YY G G+I V DC D++ + +Q L I DR D + L+
Sbjct: 48 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILI 106
Query: 82 VGNKND 87
NK D
Sbjct: 107 FANKQD 112
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + YRGA I+ + + ++ N+ K+W+ E+ YA V +LV
Sbjct: 58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILV 116
Query: 83 GNKNDQTSKKA--VDYQVA--------KEYADHLKIP-FLETSAKNGANVEQAF 125
G K D K +D+ A +E + P ++E S+K NV+ F
Sbjct: 117 GTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W E+ + C NV +
Sbjct: 57 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII 115
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLK-------------IPFLETSAKNGANVEQAFLT 127
LVGNK D + + ++AK + +K ++E SAK V + F
Sbjct: 116 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-E 174
Query: 128 MATEIKKRVTKDEKPSS 144
MAT + + +K S
Sbjct: 175 MATRAALQARRGKKKSG 191
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W E+ + C NV +
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII 113
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLK-------------IPFLETSAKNGANVEQAFLT 127
LVGNK D + + ++AK + +K ++E SAK V + F
Sbjct: 114 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-E 172
Query: 128 MATEIKKRVTKDEKPSS 144
MAT + + +K S
Sbjct: 173 MATRAALQARRGKKKSG 189
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W E+ + C NV +
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII 113
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLK-------------IPFLETSAKNGANVEQAFLT 127
LVGNK D + + ++AK + +K ++E SAK V + F
Sbjct: 114 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-E 172
Query: 128 MATEIKKRVTKDEKPSS 144
MAT + + +K S
Sbjct: 173 MATRAALQARRGKKKSG 189
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W E+ + C NV +
Sbjct: 57 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII 115
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLK-------------IPFLETSAKNGANVEQAFLT 127
LVGNK D + + ++AK + +K ++E SAK V + F
Sbjct: 116 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-E 174
Query: 128 MATEIKKRVTKDEKPSS 144
MAT + + +K S
Sbjct: 175 MATRAALQARRGKKKSG 191
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI--DRYACDNVNKLL 81
+WD GQ++ R + YY G G+I V DC D++ + +Q L I DR D + L+
Sbjct: 48 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILI 106
Query: 82 VGNKND 87
NK D
Sbjct: 107 FANKQD 112
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W E+ + C NV +
Sbjct: 58 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII 116
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLK-------------IPFLETSAKNGANVEQAFLT 127
LVGNK D + + ++AK + +K ++E SAK V + F
Sbjct: 117 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-E 175
Query: 128 MATEIKKRVTKDEKPSS 144
MAT + + +K S
Sbjct: 176 MATRAALQARRGKKKSG 192
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNN-LKQWLEEIDRYACDNV 77
R + +WDT+G + + Y + +++ +D + ET ++ LK+W EI + C N
Sbjct: 70 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNT 128
Query: 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANV 121
LLVG K+D + D E ++H + P S GAN+
Sbjct: 129 KMLLVGCKSDLRT----DVSTLVELSNHRQTP---VSYDQGANM 165
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI--DRYACDNVNKLL 81
+WD GQ++ R + YY G G+I V DC D++ + +Q L I DR D + L+
Sbjct: 48 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAI-ILI 106
Query: 82 VGNKND 87
NK D
Sbjct: 107 FANKQD 112
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W E+ + C NV +
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII 133
Query: 81 LVGNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLT 127
LVGNK D + ++ V + ++ A+ + +LE SAK V + F
Sbjct: 134 LVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-E 192
Query: 128 MAT 130
MAT
Sbjct: 193 MAT 195
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W E+ + C NV +
Sbjct: 59 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII 117
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLK-------------IPFLETSAKNGANVEQAFLT 127
LVGNK D + + ++AK + +K ++E SAK V + F
Sbjct: 118 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-E 176
Query: 128 MAT 130
MAT
Sbjct: 177 MAT 179
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W+ E+ ++ C NV +
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPII 133
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKI-------------PFLETSAKNGANVEQAFLT 127
LV NK D S + V ++A+ + ++ +LE SAK V + F T
Sbjct: 134 LVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFET 193
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W E+ ++ C NV +
Sbjct: 53 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPII 111
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLK-------------IPFLETSAKNGANVEQAFLT 127
LVGNK D + + ++AK + +K ++E SAK V + F
Sbjct: 112 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-E 170
Query: 128 MAT 130
MAT
Sbjct: 171 MAT 173
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W E+ ++ C NV +
Sbjct: 53 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPII 111
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLK-------------IPFLETSAKNGANVEQAFLT 127
LVGNK D + + ++AK + +K ++E SAK V + F
Sbjct: 112 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-E 170
Query: 128 MAT 130
MAT
Sbjct: 171 MAT 173
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + Y I++ + ++ N+ ++W E+ + C NV +
Sbjct: 55 LALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII 113
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
LVGNK D + D A+E A + P ++ AN AF M K +
Sbjct: 114 LVGNKKDLRN----DEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTK 164
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W E+ ++ C NV +
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPII 113
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLK-------------IPFLETSAKNGANVEQAFLT 127
LVGNK D + + ++AK + +K ++E SAK V + F
Sbjct: 114 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-E 172
Query: 128 MAT 130
MAT
Sbjct: 173 MAT 175
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W E+ + C NV +
Sbjct: 56 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII 114
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLK-------------IPFLETSAKNGANVEQAFLT 127
LVGNK D + + ++AK + +K ++E SAK V + F
Sbjct: 115 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-E 173
Query: 128 MAT 130
MAT
Sbjct: 174 MAT 176
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W E+ + C NV +
Sbjct: 57 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII 115
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLK-------------IPFLETSAKNGANVEQAFLT 127
LVGNK D + + ++AK + +K ++E SAK V + F
Sbjct: 116 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-E 174
Query: 128 MAT 130
MAT
Sbjct: 175 MAT 177
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNN-LKQWLEEIDRYACDNV 77
R + +WDT+G + + Y + +++ +D + ET ++ LK+W EI + C N
Sbjct: 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNT 133
Query: 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANV 121
LLVG K+D + D E ++H + P S GAN+
Sbjct: 134 KMLLVGCKSDLRT----DVSTLVELSNHRQTP---VSYDQGANM 170
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W E+ + C NV +
Sbjct: 56 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII 114
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLK-------------IPFLETSAKNGANVEQAFLT 127
LVGNK D + + ++AK + +K ++E SAK V + F
Sbjct: 115 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-E 173
Query: 128 MAT 130
MAT
Sbjct: 174 MAT 176
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNN-LKQWLEEIDRYACDNV 77
R + +WDT+G + + Y + +++ +D + ET ++ LK+W EI + C N
Sbjct: 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNT 112
Query: 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANV 121
LLVG K+D + D E ++H + P S GAN+
Sbjct: 113 KMLLVGCKSDLRT----DVSTLVELSNHRQTP---VSYDQGANM 149
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 15/121 (12%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNV 77
R + +WDTAGQE + + Y ++ +++ + ++ N+++ W+ E+ + C V
Sbjct: 57 RVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHF-CQGV 115
Query: 78 NKLLVGNKND------------QTSKKAVDYQVAKEYADHL-KIPFLETSAKNGANVEQA 124
+LVG K D Q ++ V Q + AD + + E SAK G V +
Sbjct: 116 PIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREV 175
Query: 125 F 125
F
Sbjct: 176 F 176
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI--DRYACDNVNKLL 81
+WD G ++ R + YY G G+I V DC D++ + +Q L I DR D + L+
Sbjct: 61 VWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILI 119
Query: 82 VGNKND 87
NK D
Sbjct: 120 FANKQD 125
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI--DRYACDNVNKLL 81
+WD G ++ R + YY G G+I V DC D++ + +Q L I DR D + L+
Sbjct: 50 VWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILI 108
Query: 82 VGNKND 87
NK D
Sbjct: 109 FANKQD 114
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI--DRYACDNVNKLL 81
+WD G ++ R + YY G G+I V DC D++ + +Q L I DR D + L+
Sbjct: 51 VWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILI 109
Query: 82 VGNKND 87
NK D
Sbjct: 110 FANKQD 115
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAG E + + Y I++ + ++ N+ ++W E+ + C NV +
Sbjct: 58 LALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPII 116
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLK-------------IPFLETSAKNGANVEQAFLT 127
LVGNK D + + ++AK + +K ++E SAK V + F
Sbjct: 117 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-E 175
Query: 128 MAT 130
MAT
Sbjct: 176 MAT 178
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNN-LKQWLEEIDRYAC 74
E R + +WDT+G + + Y + +++ +D + ET ++ LK+W EI Y C
Sbjct: 55 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY-C 113
Query: 75 DNVNKLLVGNKND 87
+ LL+G K D
Sbjct: 114 PSTRVLLIGCKTD 126
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNN-LKQWLEEIDRYAC 74
E R + +WDT+G + + Y + +++ +D + ET ++ LK+W EI Y C
Sbjct: 54 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY-C 112
Query: 75 DNVNKLLVGNKND 87
+ LL+G K D
Sbjct: 113 PSTRVLLIGCKTD 125
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKL 80
+ +WDTAGQE + + Y I++ + ++ N+ ++W E+ + NV +
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFX-PNVPII 133
Query: 81 LVGNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLT 127
LVGNK D + ++ V + ++ A+ + +LE SAK V + F
Sbjct: 134 LVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-E 192
Query: 128 MAT 130
MAT
Sbjct: 193 MAT 195
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNN-LKQWLEEIDRYAC 74
E R + +WDT+G + + Y + +++ +D + ET ++ LK+W EI Y C
Sbjct: 71 EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY-C 129
Query: 75 DNVNKLLVGNKND 87
+ LL+G K D
Sbjct: 130 PSTRVLLIGCKTD 142
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 113
Query: 83 GNKND 87
G K D
Sbjct: 114 GTKLD 118
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 113
Query: 83 GNKND 87
G K D
Sbjct: 114 GTKLD 118
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLE 67
+TL E T L+ +W+ G+ + + + ++VY TD+ +F +
Sbjct: 47 RTLMVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRI 104
Query: 68 EIDRY-ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFL 126
++ R +++ +LVGNK+D + V + A F+ETSA NV++ F
Sbjct: 105 QLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFE 164
Query: 127 TMATEIKKRVTKDEKPSSE 145
+ +++ R +D K +E
Sbjct: 165 GIVRQVRLR--RDSKEKNE 181
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKL 80
++++D Q+ R + ++VY TD+ +F + ++ R D+V +
Sbjct: 56 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII 115
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
LVGNK+D + V + A F+ETSA NV+ F + +I+ R
Sbjct: 116 LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 170
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKL 80
++++D Q+ R + ++VY TD+ +F + ++ R D+V +
Sbjct: 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII 110
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
LVGNK+D + V + A F+ETSA NV+ F + +I+ R
Sbjct: 111 LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKL 80
++++D Q+ R + ++VY TD+ +F + ++ R D+V +
Sbjct: 56 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII 115
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
LVGNK+D + V + A F+ETSA NV+ F + +I+ R
Sbjct: 116 LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 170
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLE 67
+TL E T L+ +W+ G+ + + + ++VY TD+ +F +
Sbjct: 47 RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 104
Query: 68 EIDRY-ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFL 126
++ R +++ +LVGNK+D + V + A F+ETSA NV++ F
Sbjct: 105 QLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFE 164
Query: 127 TMATEIKKRVTKDEKPSSE 145
+ +++ R +D K +E
Sbjct: 165 GIVRQVRLR--RDSKEKNE 181
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 113
Query: 83 GNKND 87
G K D
Sbjct: 114 GTKLD 118
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 113
Query: 83 GNKND 87
G K D
Sbjct: 114 GTKLD 118
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 113
Query: 83 GNKND 87
G K D
Sbjct: 114 GTKLD 118
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 113
Query: 83 GNKND 87
G K D
Sbjct: 114 GTKLD 118
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEE-IDRYACDNVNKLLV 82
+WD GQ+R R++ YYR G+I V D D+ ++ ++ ++ N L+
Sbjct: 48 VWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVF 107
Query: 83 GNKND 87
NK D
Sbjct: 108 ANKQD 112
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEE-IDRYACDNVNKLLV 82
+WD GQ+R R++ YYR G+I V D D+ ++ ++ ++ N L+
Sbjct: 65 VWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVF 124
Query: 83 GNKND 87
NK D
Sbjct: 125 ANKQD 129
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK---L 80
+WD GQ+R R + Y++ G+I V D D+E + L+++ D + L
Sbjct: 65 VWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKM--LLVDELRDAVLL 122
Query: 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLE--------TSAKNGANVEQAFLTMATEI 132
L NK D + A+ E D L + L T A G + + ++ E+
Sbjct: 123 LFANKQDLPNAMAI-----SEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 177
Query: 133 KKR 135
KR
Sbjct: 178 SKR 180
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 74 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 132
Query: 83 GNKND 87
G K D
Sbjct: 133 GTKLD 137
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 82 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 140
Query: 83 GNKND 87
G K D
Sbjct: 141 GTKLD 145
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 82 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 140
Query: 83 GNKND 87
G K D
Sbjct: 141 GTKLD 145
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 62 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 120
Query: 83 GNKND 87
G K D
Sbjct: 121 GTKLD 125
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 113
Query: 83 GNKND 87
G K D
Sbjct: 114 GTKLD 118
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNK 79
L+ ++DTAGQE + + Y ++ + + +F N+K +W+ E+ YA NV
Sbjct: 67 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPF 125
Query: 80 LLVGNKND 87
LL+G + D
Sbjct: 126 LLIGTQID 133
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 57 LWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 115
Query: 83 GNKND 87
G K D
Sbjct: 116 GTKLD 120
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 113
Query: 83 GNKND 87
G K D
Sbjct: 114 GTKLD 118
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 59 LWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 117
Query: 83 GNKND 87
G K D
Sbjct: 118 GTKLD 122
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 65 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 123
Query: 83 GNKND 87
G K D
Sbjct: 124 GTKLD 128
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEE-IDRYACDNVNKLLV 82
+WD GQ+R R++ YYR G+I V D D+ ++ ++ ++ N L+
Sbjct: 65 VWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVF 124
Query: 83 GNKND 87
NK D
Sbjct: 125 ANKQD 129
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLE 67
+TL E T L+ +W+ G+ + + + ++VY TD+ +F +
Sbjct: 78 RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 135
Query: 68 EIDRY-ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFL 126
++ R +++ +LVGNK+D + V + A F+ETSA NV++ F
Sbjct: 136 QLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFE 195
Query: 127 TMATEIKKRVTKDEK 141
+ +++ R EK
Sbjct: 196 GIVRQVRLRRDSKEK 210
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C + LLV
Sbjct: 56 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLV 114
Query: 83 GNKND 87
G K D
Sbjct: 115 GTKLD 119
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C + LLV
Sbjct: 56 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLV 114
Query: 83 GNKND 87
G K D
Sbjct: 115 GTKLD 119
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + +F N++ +W E+ R+ C + LLV
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLV 113
Query: 83 GNKND 87
G K D
Sbjct: 114 GTKLD 118
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLE 67
+TL E T L+ +W+ G+ + + + ++VY TD+ +F +
Sbjct: 47 RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 104
Query: 68 EIDRY-ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFL 126
++ R +++ +LVGNK+D + V + A F+ETSA NV++ F
Sbjct: 105 QLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFE 164
Query: 127 TMATEIKKR 135
+ +++ R
Sbjct: 165 GIVRQVRLR 173
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 20 TLIVIWDTAGQERFRTITS--SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDR-YACDN 76
T +V+ DT E+ S S +G ++VY D+ +F + + ++ R + D+
Sbjct: 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADH 111
Query: 77 VNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAF 125
V +LVGNK D + V + + A F+ETSA NV + F
Sbjct: 112 VPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
+ DTAGQ+ F + Y ++ + +F N+ + W+ EI R C +LV
Sbjct: 72 LCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKAPIILV 130
Query: 83 GNKN------------DQTSKKAVDYQVAKEYADHLKIP-FLETSAKNGANVEQAF 125
G ++ D+ +K V + AK A+ +K ++E SA N+++ F
Sbjct: 131 GTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAG E + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 55 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 113
Query: 83 GNKND 87
G K D
Sbjct: 114 GTKLD 118
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTD----QETFNNLKQWLEEIDRYACDNVNK 79
+WD GQ++ R + Y++ G+I V D D QE+ + L++ L+E + +
Sbjct: 77 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE---LRDAVL 133
Query: 80 LLVGNKNDQTSKKAVDYQVAKEYADHL--KIPFLE-TSAKNGANVEQAFLTMATEIKKR 135
L+ NK D + V K HL + +++ T A G + ++ E+ KR
Sbjct: 134 LVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + ++ N++ +W E+ R+ C + +LV
Sbjct: 55 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILV 113
Query: 83 GNKND 87
G K D
Sbjct: 114 GTKLD 118
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAG E + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 55 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 113
Query: 83 GNKND 87
G K D
Sbjct: 114 GTKLD 118
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 56 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 114
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 115 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 113
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 113
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 57 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 115
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 116 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 113
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 62 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 120
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 121 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 113
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 58 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 116
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 117 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 113
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-- 79
+WD GQ++ R + Y++ G+I V D D+E N + EE+ R ++ +
Sbjct: 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDA 267
Query: 80 --LLVGNKND 87
L+ NK D
Sbjct: 268 VLLVFANKQD 277
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 58 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 116
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 117 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAG E + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 58 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 116
Query: 83 GNKND 87
G K D
Sbjct: 117 GTKLD 121
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 65 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 123
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 124 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + ++ N++ +W E+ R+ C + +LV
Sbjct: 61 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILV 119
Query: 83 GNKND 87
G K D
Sbjct: 120 GTKLD 124
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 62 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 120
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 121 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAGQE + + Y ++ + ++ N++ +W E+ R+ C + +LV
Sbjct: 62 LWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILV 120
Query: 83 GNKND 87
G K D
Sbjct: 121 GTKLD 125
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 14/121 (11%)
Query: 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWL 66
++ K EE ++ +WDTAGQE + + Y + +++ + ++ +F+N+ +W
Sbjct: 62 HVMKYKNEE---FILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWE 118
Query: 67 EEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHL-----KIPFLETS--AKNGA 119
EI Y D +LVG K D + D V K+ D L + ++E S AK G
Sbjct: 119 PEIKHYI-DTAKTVLVGLKVDLRKDGSDD--VTKQEGDDLCQKLGCVAYIEASSVAKIGL 175
Query: 120 N 120
N
Sbjct: 176 N 176
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAG E + + Y ++ + +F N++ +W E+ R+ C N +LV
Sbjct: 82 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILV 140
Query: 83 GNKND 87
G K D
Sbjct: 141 GTKLD 145
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 113
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 113
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK---- 79
+WD GQ++ R + Y++ G+I V D D+E N + EE+ R ++ +
Sbjct: 48 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVL 104
Query: 80 LLVGNKND 87
L+ NK D
Sbjct: 105 LVFANKQD 112
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 14/121 (11%)
Query: 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWL 66
++ K EE ++ +WDTAGQE + + Y + +++ + ++ +F+N+ +W
Sbjct: 61 HVMKYKNEE---FILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWE 117
Query: 67 EEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHL-----KIPFLETS--AKNGA 119
EI Y D +LVG K D + D V K+ D L + ++E S AK G
Sbjct: 118 PEIKHYI-DTAKTVLVGLKVDLRKDGSDD--VTKQEGDDLCQKLGCVAYIEASSVAKIGL 174
Query: 120 N 120
N
Sbjct: 175 N 175
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 113
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 59 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 117
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 118 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 113
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK---- 79
+WD GQ++ R + Y++ G+I V D D+E N + EE+ R ++ +
Sbjct: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVL 121
Query: 80 LLVGNKND 87
L+ NK D
Sbjct: 122 LVFANKQD 129
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK---- 79
+WD GQ++ R + Y++ G+I V D D+E N + EE+ R ++ +
Sbjct: 64 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVL 120
Query: 80 LLVGNKND 87
L+ NK D
Sbjct: 121 LVFANKQD 128
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 57 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 115
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 116 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 113
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAGQE + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 113
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEE-IDRYACDNVNKLLV 82
+WD GQ++ R + YY G+I V D D+E ++ ++ L I+ + L+
Sbjct: 65 VWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVF 124
Query: 83 GNKND 87
NK D
Sbjct: 125 ANKQD 129
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQE 57
T ++WD GQE R+ ++YY +IVV D TD+E
Sbjct: 66 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 103
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQE 57
T ++WD GQE R+ ++YY +IVV D TD+E
Sbjct: 65 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 102
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQE 57
T ++WD GQE R+ ++YY +IVV D TD+E
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQE 57
T ++WD GQE R+ ++YY +IVV D TD+E
Sbjct: 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAG E + + Y ++ + +F++++ +W E+ R+ C N +LV
Sbjct: 207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILV 265
Query: 83 GNKND 87
G K D
Sbjct: 266 GTKLD 270
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAG E + + Y ++ + +F++++ +W E+ R+ C N +LV
Sbjct: 207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILV 265
Query: 83 GNKND 87
G K D
Sbjct: 266 GTKLD 270
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WDTAG E + + Y ++ + +F++++ +W E+ R+ C N +LV
Sbjct: 207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILV 265
Query: 83 GNKND 87
G K D
Sbjct: 266 GTKLD 270
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 9/126 (7%)
Query: 14 KEERTRTLIVIW---DTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEID 70
KEE T + IW D G R + + ++V+ TD+ +F+ + + L +
Sbjct: 69 KEEVTLVVYDIWEQGDAGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLR 123
Query: 71 R-YACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMA 129
++ +LVGNK+D + V + + A L +ETSA N + F
Sbjct: 124 AGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 183
Query: 130 TEIKKR 135
+I+ R
Sbjct: 184 RQIRLR 189
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 9 TLQNKKEERTRTLIVI--WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWL 66
TL EE T + +D G + R + +Y +GI+ + DC D E K
Sbjct: 53 TLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESK--- 109
Query: 67 EEIDRYACD----NVNKLLVGNKNDQ 88
EE+D D NV L++GNK D+
Sbjct: 110 EELDSLMTDETIANVPILILGNKIDR 135
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 9 TLQNKKEERTRTLIVI--WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWL 66
TL EE T + +D G + R + +Y +GI+ + DC D E K
Sbjct: 56 TLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESK--- 112
Query: 67 EEIDRYACD----NVNKLLVGNKNDQ 88
EE+D D NV L++GNK D+
Sbjct: 113 EELDSLMTDETIANVPILILGNKIDR 138
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 16/126 (12%)
Query: 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDR-YACDNVN 78
T ++WD GQE R+ ++YY II+V D D+E K EE+ R A +++
Sbjct: 60 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITK---EELYRMLAHEDLR 116
Query: 79 K---LLVGNKND----QTSKKAVDYQVAKEYADHLKIPFLETS--AKNGANVEQAFLTMA 129
K L+ NK D T+ + Y DH P+ S A G + Q M
Sbjct: 117 KAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDH---PWHIQSCCALTGEGLCQGLEWMT 173
Query: 130 TEIKKR 135
+ I R
Sbjct: 174 SRIGVR 179
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 26 DTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLVGN 84
DTAGQE + + Y +V + +F N+K+ W+ EI + C LLVG
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGT 115
Query: 85 KND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
+ D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI--DRYACDNVNKLL 81
+WD GQ+R R++ YY G+I V D D+ ++ ++ + + C N L+
Sbjct: 65 VWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELC-NAAWLV 123
Query: 82 VGNKND 87
NK D
Sbjct: 124 FANKQD 129
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAG E + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 59 LFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 117
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 118 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYACDNVNKLLV 82
++DTAG E + + Y +V + +F N+K+ W+ EI + C LLV
Sbjct: 55 LFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLV 113
Query: 83 GNKND------------QTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAF 125
G + D + +K + + A++ A LK + ++E SA ++ F
Sbjct: 114 GTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 9 TLQNKKEERTRTLIVI--WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWL 66
TL EE T + +D G + R + +Y +GI+ + DC D E K
Sbjct: 47 TLHPTSEELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESK--- 103
Query: 67 EEIDRYACD----NVNKLLVGNKNDQ 88
EE+D D NV L++GNK D+
Sbjct: 104 EELDSLMTDETIANVPILILGNKIDR 129
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 47 IIVVYDCTDQETFNNLKQWLEEIDR-YACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADH 105
++V+ TD+ +F+ + + L + ++ +LVGNK+D + V + + A
Sbjct: 79 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT 138
Query: 106 LKIPFLETSAKNGANVEQAFLTMATEIKKR 135
L +ETSA N + F +I+ R
Sbjct: 139 LSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 47 IIVVYDCTDQETFNNLKQWLEEIDR-YACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADH 105
++V+ TD+ +F+ + + L + ++ +LVGNK+D + V + + A
Sbjct: 89 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT 148
Query: 106 LKIPFLETSAKNGANVEQAFLTMATEIKKR 135
L +ETSA N + F +I+ R
Sbjct: 149 LSCKHIETSAALHHNTRELFEGAVRQIRLR 178
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLV 82
+WD GQ++ R + YY+ II V D D++ + + ++ ++ N L+
Sbjct: 65 VWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVF 124
Query: 83 GNKND 87
NK+D
Sbjct: 125 ANKHD 129
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK---- 79
+WD G ++ R + Y++ G+I V D D+E N + EE+ R ++ +
Sbjct: 50 VWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR---EELMRMLAEDELRDAVL 106
Query: 80 LLVGNKND 87
L+ NK D
Sbjct: 107 LVFANKQD 114
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 9 TLQNKKEERTRTLIVI--WDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWL 66
TL EE T + +D G E+ R + +Y +GI+ + DC D K L
Sbjct: 66 TLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVEL 125
Query: 67 EEI-DRYACDNVNKLLVGNKNDQT 89
+ NV L++GNK D+T
Sbjct: 126 NALMTDETISNVPILILGNKIDRT 149
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQE 57
+WD GQ++ R + Y++ G+I V D D++
Sbjct: 68 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 101
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI---DRYACDNVNKL 80
IWD GQ+ R+ +Y+ G+I V D D++ + ++ L+ + +R A L
Sbjct: 66 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLA--GATLL 123
Query: 81 LVGNKND 87
+ NK D
Sbjct: 124 IFANKQD 130
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ 56
+LP +K + + ++D +GQ R+R + YY+ II V D +D+
Sbjct: 51 ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDR 103
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 21/84 (25%)
Query: 24 IWDTAGQERF---------RTITSSY-----YRG-----AHGIIVVYDCTDQETFNNLK- 63
+WDTAGQE + +T+ +Y RG A ++ + +F N++
Sbjct: 57 LWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRA 116
Query: 64 QWLEEIDRYACDNVNKLLVGNKND 87
+W E+ R+ C N +LVG K D
Sbjct: 117 KWYPEV-RHHCPNTPIILVGTKLD 139
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI---DRYACDNVNKL 80
IWD GQ+ R+ +Y+ G+I V D D++ + ++ L+ + +R A L
Sbjct: 66 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLA--GATLL 123
Query: 81 LVGNKND 87
+ NK D
Sbjct: 124 IFANKQD 130
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI---DRYACDNVNKL 80
IWD GQ+ R+ +Y+ G+I V D D++ + ++ L+ + +R A L
Sbjct: 64 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLA--GATLL 121
Query: 81 LVGNKND 87
+ NK D
Sbjct: 122 IFANKQD 128
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 14 KEERTRTLIV-IWDTAGQERFRTITSSYYRGAHGIIVVYDCT-DQETFNNLKQWLEEIDR 71
+++R R L++ +WD AG+E F + + + VYD + Q + K WL I
Sbjct: 47 RDKRKRDLVLNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA 106
Query: 72 YACDNVNKLLVGNK---NDQTSKKAVDYQVAKEYADHLKIP 109
A + +LVG +D+ +KA ++ KE + P
Sbjct: 107 RASSS-PVILVGTHLDVSDEKQRKACXSKITKELLNKRGFP 146
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 14 KEERTRTLIV-IWDTAGQERFRTITSSYYRGAHGIIVVYDCT-DQETFNNLKQWLEEIDR 71
+++R R L++ +WD AG+E F + + + VYD + Q + K WL I
Sbjct: 49 RDKRKRDLVLNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA 108
Query: 72 YACDNVNKLLVGNK---NDQTSKKAVDYQVAKEYADHLKIP 109
A + +LVG +D+ +KA ++ KE + P
Sbjct: 109 RASSS-PVILVGTHLDVSDEKQRKACXSKITKELLNKRGFP 148
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLV 82
+WD GQ R YY +I V D D++ K E + + + K +LV
Sbjct: 50 VWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS--ELVAMLEEEELRKAILV 107
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFL--------ETSAKNGANVEQAFLTMATEIKK 134
N Q ++A+ E A+ L +P L +TSA G +++A + +K
Sbjct: 108 VFANKQDMEQAM---TPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 164
Query: 135 R 135
R
Sbjct: 165 R 165
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI---DRYACDNVNKL 80
IWD GQ+ R+ +Y+ G+I V D D++ + ++ L+ + +R A L
Sbjct: 66 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLA--GATLL 123
Query: 81 LVGNKND 87
+ NK D
Sbjct: 124 IFANKQD 130
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 32.7 bits (73), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 14/123 (11%)
Query: 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY--- 72
E+ R ++D G ++FR + +YY +I V D +D +K ++ + ++
Sbjct: 59 EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDI 118
Query: 73 -----ACDNVNKLLVGNKNDQTSKKAVDYQV-----AKEYADHLKIPFLETSAKNGANVE 122
V L NK D K V DH + F K G V
Sbjct: 119 RRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLK-GTGVH 177
Query: 123 QAF 125
+ F
Sbjct: 178 EGF 180
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 6 PYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ 64
P Q K + + +WD GQ + R SY+ +I V D D++ F Q
Sbjct: 47 PTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 105
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 6 PYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ 64
P Q K + + +WD GQ + R SY+ +I V D D++ F Q
Sbjct: 46 PTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 104
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI---DRYACDNVNKL 80
IWD G + R+ +Y+ G+I V D D++ + ++ L+ + +R A L
Sbjct: 49 IWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLA--GATLL 106
Query: 81 LVGNKND 87
+ NK D
Sbjct: 107 IFANKQD 113
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 25/61 (40%)
Query: 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK 63
+ P Q K + + +WD GQ + R SY+ +I V D D++ F
Sbjct: 32 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETG 91
Query: 64 Q 64
Q
Sbjct: 92 Q 92
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLE-EIDRYACDNVNKLLV 82
+WD GQ R YY +I V D TD++ + + L + + L+
Sbjct: 66 VWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVF 125
Query: 83 GNKNDQTSKKAVDYQVAKE 101
NK DQ + +V+KE
Sbjct: 126 ANKQDQPGALSAS-EVSKE 143
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 49 VVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKI 108
V+ D D ++ ++ + + N +LV NK D KK + K+ L +
Sbjct: 84 VIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDI-KKMRKELGV 140
Query: 109 PFLETSAKNGANVEQAFLTMATEIKKRVT 137
P + T+AK G VE+ +A + +VT
Sbjct: 141 PVIPTNAKKGEGVEELKRMIALMAEGKVT 169
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAH 45
YQ+L K + R L+V W +G F I +YR H
Sbjct: 113 YQSLLTKNKARVIILMV-WIVSGLTSFLPIQMHWYRATH 150
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAH 45
YQ+L K + R L+V W +G F I +YR H
Sbjct: 141 YQSLLTKNKARVIILMV-WIVSGLTSFLPIQMHWYRATH 178
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAH 45
YQ+L K + R L+V W +G F I +YR H
Sbjct: 118 YQSLLTKNKARVIILMV-WIVSGLTSFLPIQMHWYRATH 155
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAH 45
YQ+L K + R L+V W +G F I +YR H
Sbjct: 142 YQSLLTKNKARVIILMV-WIVSGLTSFLPIQMHWYRATH 179
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAH 45
YQ+L K + R L+V W +G F I +YR H
Sbjct: 117 YQSLLTKNKARVIILMV-WIVSGLTSFLPIQMHWYRATH 154
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAH 45
YQ+L K + R L+V W +G F I +YR H
Sbjct: 149 YQSLLTKNKARVIILMV-WIVSGLTSFLPIQMHWYRATH 186
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLV 82
+WD G R YY +I V D D++ K E + + + K +LV
Sbjct: 52 VWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS--ELVAMLEEEELRKAILV 109
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFL--------ETSAKNGANVEQAF 125
N Q ++A+ + E A+ L +P L +TSA G +++A
Sbjct: 110 VFANKQDMEQAM---TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 157
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAH 45
YQ+L K + R L+V W +G F I +YR H
Sbjct: 149 YQSLLTKNKARVIILMV-WIVSGLTSFLPIQMHWYRATH 186
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAH 45
YQ+L K + R L+V W +G F I +YR H
Sbjct: 148 YQSLLTKNKARVIILMV-WIVSGLTSFLPIQMHWYRATH 185
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAH 45
YQ+L K + R L+V W +G F I +YR H
Sbjct: 290 YQSLLTKNKARVIILMV-WIVSGLTSFLPIQMHWYRATH 327
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 40 YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACD---NVNKLLVGNKNDQTSKKAVDY 96
Y AH +VVY +++F++ +LE + +A + ++ LL+GNK D + V
Sbjct: 88 YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTK 147
Query: 97 QVAKEYADHLKIPFLETSA 115
A F E SA
Sbjct: 148 AEGVALAGRFGCLFFEVSA 166
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 24/61 (39%)
Query: 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK 63
+ P Q K + + +WD G + R SY+ +I V D D++ F
Sbjct: 32 ITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETG 91
Query: 64 Q 64
Q
Sbjct: 92 Q 92
>pdb|3T32|A Chain A, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
pdb|3T32|B Chain B, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
Length = 383
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDN 76
++I+I + ++ F +I Y +G HG+ + Q + WL EI Y DN
Sbjct: 240 SIIIIPNEKLRQAFTSI--QYRQGFHGLNIFAYTAXQSAYTECNDWLNEIRFYIEDN 294
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ 64
+WD GQ R Y+ +I V D TD++ K
Sbjct: 70 VWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKH 110
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 12/120 (10%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WD G R YY +I V D D++ K + +LV
Sbjct: 55 VWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS-ELVAXLEEEELRKAILVV 113
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFL--------ETSAKNGANVEQAFLTMATEIKKR 135
N Q ++A + E A+ L +P L +TSA G +++A + +K R
Sbjct: 114 FANKQDXEQA---XTSSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLKSR 170
>pdb|1NOG|A Chain A, Crystal Structure Of Conserved Protein 0546 From
Thermoplasma Acidophilum
Length = 177
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 83 GNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138
G K +++ +DY A+ +I +E G +VE A L MA + +R+ +
Sbjct: 72 GGKGRTVTREMIDYLEARVKEMKAEIGKIELFVVPGGSVESASLHMARAVSRRLER 127
>pdb|2ZBK|A Chain A, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|C Chain C, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|E Chain E, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
pdb|2ZBK|G Chain G, Crystal Structure Of An Intact Type Ii Dna Topoisomerase:
Insights Into Dna Transfer Mechanisms
Length = 389
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 23 VIWDTAGQERFRTITSSYYRGAHGIIV 49
+I+D + + TI YYRG H +++
Sbjct: 88 IIYDALVSDEYPTIRDLYYRGKHSLLL 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,852,579
Number of Sequences: 62578
Number of extensions: 183806
Number of successful extensions: 811
Number of sequences better than 100.0: 367
Number of HSP's better than 100.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 367
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)