BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2646
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1
Length = 205
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 105/150 (70%), Positives = 117/150 (78%), Gaps = 13/150 (8%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL+EIDRYA +NVNKLLVG
Sbjct: 64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV-----TK 138
NK+D T+KK VD+ AKEYAD L IPFLETSAKN NVEQAF+TMA EIK R+
Sbjct: 124 NKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAAS 183
Query: 139 DEKPSSESDAKKLNLNSGKPVDAPRSGGCC 168
D KPS + +NS PV A + GGCC
Sbjct: 184 DSKPS-------VKINSSTPVSANK-GGCC 205
>sp|P22125|RAB1_DIPOM Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1
Length = 202
Score = 206 bits (525), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 103/145 (71%), Positives = 115/145 (79%), Gaps = 3/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL+EIDRYA +NVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK D T+KK VDY AKE+AD L IPFLETSAKN NVEQAF+TMA EIKKR+ S
Sbjct: 121 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPG-ATS 179
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
S+ +N+ S PV + GGCC
Sbjct: 180 GGSEKSNVNIQS-TPVKSS-GGGCC 202
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1
Length = 201
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/145 (68%), Positives = 113/145 (77%), Gaps = 4/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE++ N+KQWL+EIDRYA +NVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D T+KK VD AKE+AD L +PFLETSAKN NVEQAF+TMA EIKKR+ P
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRM----GPG 176
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ S ++ NL P SGGCC
Sbjct: 177 AASGGERPNLKIDSTPVKPASGGCC 201
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1
PE=3 SV=1
Length = 203
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/145 (67%), Positives = 115/145 (79%), Gaps = 2/145 (1%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL EIDRYA +NVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D TSKK V+Y VAK +AD + IPFLETSAKN NVEQAF+TMA EIK R+ P
Sbjct: 121 NKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIP- 179
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+++ + GKP+++ +S CC
Sbjct: 180 TKAGGPVVRPQEGKPINS-KSSSCC 203
>sp|Q5RE13|RAB1B_PONAB Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1
Length = 201
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 99/145 (68%), Positives = 112/145 (77%), Gaps = 4/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE++ N+KQWL+EIDRYA +NVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D T+KK VD AKE+AD L IPFLETSAKN NVEQAF+TMA EIKKR+ P
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM----GPG 176
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ S ++ NL P GGCC
Sbjct: 177 AASGGERPNLKIDSTPVKPAGGGCC 201
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1
Length = 201
Score = 204 bits (519), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 99/145 (68%), Positives = 112/145 (77%), Gaps = 4/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE++ N+KQWL+EIDRYA +NVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D T+KK VD AKE+AD L IPFLETSAKN NVEQAF+TMA EIKKR+ P
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM----GPG 176
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ S ++ NL P GGCC
Sbjct: 177 AASGGERPNLKIDSTPVKPAGGGCC 201
>sp|P34139|RAB1A_DICDI Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A
PE=2 SV=2
Length = 202
Score = 203 bits (516), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 97/145 (66%), Positives = 116/145 (80%), Gaps = 3/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TD+ TF N++QWL+EIDR+AC+NVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D +KK VD+ AK +AD L+IPFLETSAK NVEQAF+TMATEIK R+T + P+
Sbjct: 121 NKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQ-PT 179
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
D K+ S P+ +P+S GCC
Sbjct: 180 QTVDKNKVVPGSSAPI-SPKS-GCC 202
>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3
Length = 205
Score = 202 bits (515), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 99/145 (68%), Positives = 112/145 (77%), Gaps = 3/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL+EIDRYA +NVNKLLVG
Sbjct: 64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK D T+KK VDY AKE+AD L IPFLETSAKN NVEQ+F+TMA EIKKR+ +
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG---A 180
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ A+K N+ GGCC
Sbjct: 181 TAGGAEKSNVKIQSTPVKQSGGGCC 205
>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3
Length = 205
Score = 202 bits (515), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 99/145 (68%), Positives = 112/145 (77%), Gaps = 3/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL+EIDRYA +NVNKLLVG
Sbjct: 64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK D T+KK VDY AKE+AD L IPFLETSAKN NVEQ+F+TMA EIKKR+ +
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG---A 180
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ A+K N+ GGCC
Sbjct: 181 TAGGAEKSNVKIQSTPVKQSGGGCC 205
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3
Length = 205
Score = 202 bits (515), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 99/145 (68%), Positives = 112/145 (77%), Gaps = 3/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL+EIDRYA +NVNKLLVG
Sbjct: 64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK D T+KK VDY AKE+AD L IPFLETSAKN NVEQ+F+TMA EIKKR+ +
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG---A 180
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ A+K N+ GGCC
Sbjct: 181 TAGGAEKSNVKIQSTPVKQSGGGCC 205
>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3
Length = 205
Score = 202 bits (515), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 99/145 (68%), Positives = 112/145 (77%), Gaps = 3/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL+EIDRYA +NVNKLLVG
Sbjct: 64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 123
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK D T+KK VDY AKE+AD L IPFLETSAKN NVEQ+F+TMA EIKKR+ +
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG---A 180
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ A+K N+ GGCC
Sbjct: 181 TAGGAEKSNVKIQSTPVKQSGGGCC 205
>sp|Q4R8X3|RAB1B_MACFA Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2
SV=1
Length = 201
Score = 202 bits (515), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 98/145 (67%), Positives = 112/145 (77%), Gaps = 4/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TD+E++ N+KQWL+EIDRYA +NVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D T+KK VD AKE+AD L IPFLETSAKN NVEQAF+TMA EIKKR+ P
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM----GPG 176
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ S ++ NL P GGCC
Sbjct: 177 AASGGERPNLKIDSTPVKPAGGGCC 201
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1
Length = 201
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/146 (67%), Positives = 115/146 (78%), Gaps = 6/146 (4%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRT+TSSYYRGAHGIIVVYD TDQE++ N+KQWL+EIDRYA +NVNKLLVG
Sbjct: 61 IWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D T+KK VD AKE+AD L +PFLETSAKN NVEQAF+TMA EIKKR+ P
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRM----GPG 176
Query: 144 SESDAKKLNLN-SGKPVDAPRSGGCC 168
+ S ++ NL PV + SGGCC
Sbjct: 177 AASGGERPNLKIDSTPVKSA-SGGCC 201
>sp|P33723|YPT1_NEUCR GTP-binding protein ypt1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ypt-1
PE=3 SV=1
Length = 203
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/145 (66%), Positives = 114/145 (78%), Gaps = 2/145 (1%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGI VVYD TD ++FNN+KQWL+EIDRYA + VNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D T KK V+Y VAKE+AD L IPFLETSAKN +NVEQAFLTMA +IK+R+ +
Sbjct: 121 NKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERM--GSSIA 178
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ + +N++ G V SGGCC
Sbjct: 179 TNNTKASVNVSPGHGVSNNSSGGCC 203
>sp|Q2HJH2|RAB1B_BOVIN Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1
Length = 201
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/145 (67%), Positives = 111/145 (76%), Gaps = 4/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE++ N+KQWL+EIDRYA +NVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D T+KK VD AKE+AD L IPFLETSAKN NVEQAF+TMA EIKKR+ P
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM----GPG 176
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ S ++ NL GGCC
Sbjct: 177 AASGGERPNLKIDSTPVKQAGGGCC 201
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3
Length = 205
Score = 200 bits (508), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 98/145 (67%), Positives = 111/145 (76%), Gaps = 3/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQ +FNN+KQWL+EIDRYA +NVNKLLVG
Sbjct: 64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVG 123
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK D T+KK VDY AKE+AD L IPFLETSAKN NVEQ+F+TMA EIKKR+ +
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG---A 180
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ A+K N+ GGCC
Sbjct: 181 TAGGAEKSNVKIQSTPVKQSGGGCC 205
>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1
Length = 203
Score = 199 bits (507), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 97/145 (66%), Positives = 111/145 (76%), Gaps = 2/145 (1%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL EIDRYA +NVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D T KK VDYQ AK +AD + IPFLETSAKN NVEQAF+TMA EIK R+ +
Sbjct: 121 NKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMAS-QPVP 179
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ + GKP++ +S CC
Sbjct: 180 PKPGGPVVRPTEGKPIN-NKSSSCC 203
>sp|Q06AU7|RAB1B_PIG Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1
Length = 201
Score = 197 bits (500), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 97/145 (66%), Positives = 110/145 (75%), Gaps = 4/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQER RTITSSYYRGAHGIIVVYD TDQE++ N+KQWL+EIDRYA +NVNKLLVG
Sbjct: 61 IWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D T+KK VD AKE+AD L IPFLETSAKN NVEQAF+TMA EIKKR+ P
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM----GPG 176
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ S ++ NL GGCC
Sbjct: 177 AASGGERPNLKIDSTPVKQAGGGCC 201
>sp|Q92928|RAB1C_HUMAN Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5
SV=2
Length = 201
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/145 (64%), Positives = 110/145 (75%), Gaps = 4/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERF TITSSYYRGAHG +VVYD TDQE++ N+KQWL+EIDR+A +NVNKLLVG
Sbjct: 61 IWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D T+KK VD AKE+AD L IPFLETSAKN NVEQAF+TMA EIKK++ P
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQM----GPG 176
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ S ++ NL P GGCC
Sbjct: 177 AASGGERPNLKIDSTPVKPAGGGCC 201
>sp|P11620|YPT1_SCHPO GTP-binding protein ypt1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt1 PE=1 SV=2
Length = 203
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 92/145 (63%), Positives = 113/145 (77%), Gaps = 2/145 (1%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGII+VYD TDQ++FNN+KQWL+EIDRYA + VN+LLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D KK V+Y VAKE+AD L IPFLETSAK+ NVEQAFLTM+ +IK+R+ + S
Sbjct: 121 NKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFAS 180
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
S + + + + G V + S CC
Sbjct: 181 SNAKS-SVKVGQGTNV-SQSSSNCC 203
>sp|Q01890|YPT1_PHYIN Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1
PE=3 SV=1
Length = 201
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/147 (65%), Positives = 112/147 (76%), Gaps = 8/147 (5%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL EIDRYAC+NVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D T+K+ V AKE+A+ L I FLETSAKN ANVE+AF+ MA +IKKR+ P
Sbjct: 121 NKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMA--NAPV 178
Query: 144 SESDAKKLNLNSGKPVDAPRSGG--CC 168
+ K L G+ V P +GG CC
Sbjct: 179 APKAGVK--LTPGQQV--PSNGGSKCC 201
>sp|P28188|RAD2A_ARATH Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1
SV=3
Length = 203
Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 88/145 (60%), Positives = 109/145 (75%), Gaps = 4/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGII+VYD TD+E+FNN+KQWL EIDRYA DNVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D T +A+ Y+ AK +AD + IPF+ETSAK+ NVEQAF+ M+ IK+R+ +P+
Sbjct: 121 NKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMAS--QPA 178
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ G+PV + GCC
Sbjct: 179 GNNARPPTVQIRGQPV--AQKNGCC 201
>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2
SV=1
Length = 202
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 91/145 (62%), Positives = 108/145 (74%), Gaps = 5/145 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIV YD TD E+FNN+KQWL EIDRYA +NVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NKND TS+K V + AK +AD L IPFLETSAKN NVE+AF+ M IK R+ +P+
Sbjct: 121 NKNDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMA--SQPA 178
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ + + G+PV+ + GCC
Sbjct: 179 GGAKPPTVQIR-GQPVN--QQSGCC 200
>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
Length = 203
Score = 186 bits (473), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 90/145 (62%), Positives = 108/145 (74%), Gaps = 4/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGII+VYD TDQE+FNN+KQWL EIDRYA DNVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK+D T+ K V + AK +AD + IPF+ETSAKN NV+QAF+ MA IK R+ +P+
Sbjct: 121 NKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMA--SQPA 178
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ + G+PV+ S CC
Sbjct: 179 AANARPATVQIRGQPVNQKTS--CC 201
>sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=1
SV=1
Length = 202
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/145 (62%), Positives = 107/145 (73%), Gaps = 5/145 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIV YD TD E+FNN+KQWL EIDRYA +NVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK D TS+K V + AK +AD L IPFLETSAKN NVE+AF+ M IK R+ +P+
Sbjct: 121 NKCDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMA--SQPA 178
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
S + + G+PV+ + GCC
Sbjct: 179 GGSKPPTVQIR-GQPVN--QQSGCC 200
>sp|P40392|RIC1_ORYSJ Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1
PE=2 SV=2
Length = 202
Score = 183 bits (464), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 89/145 (61%), Positives = 105/145 (72%), Gaps = 4/145 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TDQE+FNN+KQWL EIDRYA +NVNKLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK D + V Y+ K AD + IPFLETSAK+ NVE+AF+TMA EIK R+ +P+
Sbjct: 121 NKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMAS--QPA 178
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
+ + G+PV + CC
Sbjct: 179 TNASKPATVQMRGQPV--AQQSSCC 201
>sp|Q9ZRE2|RABD1_ARATH Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1
SV=1
Length = 205
Score = 182 bits (462), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/145 (60%), Positives = 106/145 (73%), Gaps = 2/145 (1%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGII+VYDCT+ E+FNN+KQWL EIDRYA ++V KLL+G
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NKND K V + + AD L IPFLETSAK+ NVEQAFLT+A EIKK++ +
Sbjct: 121 NKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNAN 180
Query: 144 SESDAKKLNLNSGKPVDAPRSGGCC 168
S + + G+P+ +GGCC
Sbjct: 181 KTSGPGTVQMK-GQPIQ-QNNGGCC 203
>sp|P34140|RAB1B_DICDI Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B
PE=2 SV=2
Length = 206
Score = 179 bits (455), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 94/111 (84%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGIIVVYD TD +FNN+KQW++EI RYACD+V +LLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D KK VD A+EYAD + IPFLETSAK+ ANVEQAF+ MA+EIKK
Sbjct: 121 NKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKK 171
>sp|P01123|YPT1_YEAST GTP-binding protein YPT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT1 PE=1 SV=2
Length = 206
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/148 (58%), Positives = 106/148 (71%), Gaps = 5/148 (3%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRG+HGII+VYD TDQE+FN +K WL+EIDRYA V KLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK---DE 140
NK D K+ V+Y VAKE+AD K+PFLETSA + NVE AFLTMA +IK+ +++ +E
Sbjct: 121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNE 180
Query: 141 KPSSESDAKKLNLNSGKPVDAPRSGGCC 168
+ D +NL + GGCC
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNT--GGGCC 206
>sp|P16976|YPTM1_MAIZE GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2
Length = 208
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/152 (58%), Positives = 106/152 (69%), Gaps = 13/152 (8%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGAHGII+VYD TD E+FNN+KQWL+EIDRYA D+V KLLVG
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK-----RVTK 138
NK D +AVD VA+ YA + IPFLETSAK NVE+AFL M+ IKK +
Sbjct: 121 NKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAAL 180
Query: 139 DEKPSSESDAKKLNLNSGKPV--DAPRSGGCC 168
+ KPS+ K G+P+ + +S CC
Sbjct: 181 ERKPSNVVQMK------GRPIQQEQQKSSRCC 206
>sp|Q54NU2|RAB1D_DICDI Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D
PE=1 SV=1
Length = 204
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 78/113 (69%), Positives = 94/113 (83%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSSYYRGA GII+VYDCTDQ++F N+KQW+ EIDRYAC+NVNKLLVG
Sbjct: 63 IWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVG 122
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
NK D ++K VD AK +A+ IPF+ETSAKN NVE+ F++MA +IK R+
Sbjct: 123 NKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRL 175
>sp|Q54FL2|RABG2_DICDI Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3
SV=2
Length = 197
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 90/120 (75%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSS+YRGAHG++V YD TDQ T+NN++ W++EI RYA V+++LVG
Sbjct: 59 IWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVG 118
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK D +K V+ +A+EYAD L IPF+E SA G NVE+AF+ MA EI + KPS
Sbjct: 119 NKCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIYRNHMGGSKPS 178
>sp|Q54E92|RABG1_DICDI Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3
SV=1
Length = 196
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 89/120 (74%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITSS+YRGAHG++V YD TDQ T+NN+ W++EI RY V+++LVG
Sbjct: 60 IWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVG 119
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143
NK D +K V+ +A+EYAD L IPF+ETSA G NVE+AF+ MA EI + KPS
Sbjct: 120 NKCDLEDRKLVNASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEIYRNHIGGSKPS 179
>sp|O76173|RAB1C_DICDI Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C
PE=2 SV=1
Length = 201
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 93/111 (83%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERF+TIT+SYYRGAHG+I+VYD T ++FN++K+WL ++DR+A +V KL+VG
Sbjct: 86 IWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVG 145
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134
NK D SK+AVD+++AK++AD L IP +ETSAK +++AF+ +A++IKK
Sbjct: 146 NKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIKK 196
>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A
PE=3 SV=1
Length = 208
Score = 152 bits (385), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 100/144 (69%), Gaps = 2/144 (1%)
Query: 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACD 75
E R + IWDTAGQERFRTIT++YYRGA GI++VYD TD+++F N++ W+ I+++A D
Sbjct: 60 EGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATD 119
Query: 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
+VNK+L+GNK D KK VD K AD I FLETSAKN NVE+AF+++A +IKKR
Sbjct: 120 SVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKR 179
Query: 136 V--TKDEKPSSESDAKKLNLNSGK 157
+ T +E+P L N+ K
Sbjct: 180 MIDTPNEQPQVVQPGTNLGANNNK 203
>sp|P20791|RAB8B_DICDI Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B
PE=2 SV=1
Length = 203
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 91/121 (75%)
Query: 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACD 75
E R + IWDTAGQERFRTIT++YYRGA GI++VYD TD+++F +++ W+ I+++A D
Sbjct: 60 EGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASD 119
Query: 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135
+VNK+L+GNK D T KK VD K AD I FLETSAKN NVE+AF+ +A +IKKR
Sbjct: 120 SVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKR 179
Query: 136 V 136
+
Sbjct: 180 M 180
>sp|Q9SF91|RAE1E_ARATH Ras-related protein RABE1e OS=Arabidopsis thaliana GN=RABE1E PE=1
SV=1
Length = 218
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 99/153 (64%), Gaps = 3/153 (1%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
R + IWDTAGQERFRTIT++YYRGA GI++VYD TD+ +FNN++ W++ I+++A D+VN
Sbjct: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDSVN 122
Query: 79 KLLVGNKNDQ-TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137
K+LVGNK D SK+AV + AD I F ETSAK NVEQ FL++A +IK+R+T
Sbjct: 123 KILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNQNVEQVFLSIAKDIKQRLT 182
Query: 138 KDEKPSSESDAK--KLNLNSGKPVDAPRSGGCC 168
+ + + K K + N CC
Sbjct: 183 ESDTKAEPQGIKITKQDANKASSSSTNEKSACC 215
>sp|Q9LZD4|RAE1D_ARATH Ras-related protein RABE1d OS=Arabidopsis thaliana GN=RABE1D PE=1
SV=1
Length = 216
Score = 143 bits (361), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 97/151 (64%), Gaps = 1/151 (0%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
R + IWDTAGQERFRTIT++YYRGA GI++VYD TD+ +FNN++ W++ I+++A DNVN
Sbjct: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDNVN 122
Query: 79 KLLVGNKNDQ-TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137
K+LVGNK D SK+AV + AD I F ETSAK NVE F+++A +IK+R+T
Sbjct: 123 KILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQRLT 182
Query: 138 KDEKPSSESDAKKLNLNSGKPVDAPRSGGCC 168
+ + + K ++ CC
Sbjct: 183 ETDTKAEPQGIKITKQDTAASSSTAEKSACC 213
>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1
Length = 215
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 87/119 (73%), Gaps = 1/119 (0%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
R + IWDTAGQERFRTIT++YYRGA GI++VYD TD+ +FNN++ W+ I+++A DNVN
Sbjct: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN 122
Query: 79 KLLVGNKNDQ-TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136
K+LVGNK D SK+AV + AD I F ETSAK NVE+ F ++A +IK+R+
Sbjct: 123 KILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 181
>sp|O24466|RAE1A_ARATH Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1
SV=1
Length = 216
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 98/153 (64%), Gaps = 4/153 (2%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
R + IWDTAGQERFRTIT++YYRGA GI++VYD TD+ +FNN++ W+ I+++A D+VN
Sbjct: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVN 122
Query: 79 KLLVGNKNDQ-TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137
K+LVGNK D SK+AV + AD + F ETSAK NVE+ F ++A +IK+R+
Sbjct: 123 KILVGNKADMDESKRAVPKSKGQALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLA 182
Query: 138 KDEKPSSESDAKKLNLN--SGKPVDAPRSGGCC 168
D +E K+N + A + CC
Sbjct: 183 -DTDARAEPQTIKINQSDQGAGTSQATQKSACC 214
>sp|P36861|YPTV2_VOLCA GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1
Length = 217
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 96/153 (62%), Gaps = 10/153 (6%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFRTITS+YYRGA GII+VYD TD+ +FNN++ W+ I+++A DNVNK+LVG
Sbjct: 66 IWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVG 125
Query: 84 NKNDQT-SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEK- 141
NK D K+ V + AD F ETSAK+ +VE+AF+ +A ++ R+ +
Sbjct: 126 NKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGEHAN 185
Query: 142 -----PSSESDAKKLNLNSGKPVDAPRSG-GCC 168
S A+ + L SG P +P G CC
Sbjct: 186 QQLLQQQQLSAAQPVRLTSGSP--SPAQGKSCC 216
>sp|P28186|RAE1C_ARATH Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1
SV=1
Length = 216
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
R + IWDTAGQERFRTIT++YYRGA GI++VYD TD+ +FNN++ W+ I+++A DNVN
Sbjct: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN 122
Query: 79 KLLVGNKNDQ-TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137
K+LVGNK D SK+AV + AD I F ETSAK NVE+ F ++ +IK+R++
Sbjct: 123 KILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLS 182
>sp|P36409|RAB2A_DICDI Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A
PE=2 SV=2
Length = 207
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/149 (46%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQE FR+IT SYYRG+ G ++VYD T ++TFN+L WL++ YA N+ +L+G
Sbjct: 58 IWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIG 117
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK-DEKP 142
NK+D SK+AV Y+ +++AD + FLETSAK +NVE+AF+ A++I +++ K D
Sbjct: 118 NKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGDFDI 177
Query: 143 SSESDAKKLNLNSGKPVDA---PRSGGCC 168
++ES KL + K P GGCC
Sbjct: 178 NNESFGIKLGAPTSKQDGTDQKPAGGGCC 206
>sp|P41924|RYL1_YARLI Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RYL1 PE=3 SV=1
Length = 203
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 95/150 (63%), Gaps = 5/150 (3%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
R + +WDTAGQERFRTIT++YYRGA GI++VYD TD+++FNN++ W + + YA + V
Sbjct: 59 RVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVE 118
Query: 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138
+LVGNK D K+ V + + AD IPFLE S+K NVE+ F ++AT I+ V K
Sbjct: 119 LILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAK 178
Query: 139 DEKPSSESDAKKLNLNSGKPVDAPRSGGCC 168
+ES + +N+ G+ A + CC
Sbjct: 179 --TKGNESGSGGINIAEGEENSASK---CC 203
>sp|P34141|RABA_DICDI Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2
SV=2
Length = 201
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 80/106 (75%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAGQERFR +S YRG H ++VVYD TDQ +F N+ +W++EI+RYA DNV K+++G
Sbjct: 61 IWDTAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAKWIQEIERYARDNVIKMIIG 120
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMA 129
NK+D S+K VD +A+E+AD L I F ETSAK N+E AF+++
Sbjct: 121 NKSDMISQKVVDPFLAQEFADSLDITFKETSAKQAINIEDAFISLV 166
>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt2 PE=3 SV=1
Length = 200
Score = 133 bits (334), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 97/141 (68%), Gaps = 1/141 (0%)
Query: 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78
R + IWDTAGQERFRTIT++YYRGA GI+++YD TD+++F+N++ W ++++A +NV
Sbjct: 57 RIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVY 116
Query: 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138
K+L+GNK D ++ V ++ + AD L + FLE SAK NV++AF T+A EIKK+
Sbjct: 117 KILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKID 176
Query: 139 DEKPSSESDAKKLNLNSGKPV 159
E S + A ++L + + V
Sbjct: 177 AENEFS-NQANNVDLGNDRTV 196
>sp|Q558I0|RABF1_DICDI Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1
PE=3 SV=1
Length = 190
Score = 133 bits (334), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
IWDTAG++RFR + +S+YRG HG+I+VYD TDQ +F N+ W+E+I RYA +NV K+++G
Sbjct: 60 IWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIG 118
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMA 129
NKND S+K VD +A+E+AD L IPF E SAK N+E+AF+++
Sbjct: 119 NKNDLVSQKVVDPFLAQEFADSLDIPFKEISAKQSINIEEAFISLV 164
>sp|Q9TVU5|RAB1_THEPA Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1
Length = 220
Score = 132 bits (333), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 103/155 (66%), Gaps = 4/155 (2%)
Query: 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEE 68
++ K + T + IWDTAGQERFRTITS+YYRGAHGII VYD T++ +F+++ + WL++
Sbjct: 46 IKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQD 105
Query: 69 IDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTM 128
ID+YA NV KLL+GNK D + V AK A+ + ++E SAK +NVE+AF T+
Sbjct: 106 IDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTI 165
Query: 129 ATEIKKRVTKDEKPSSESDAKKLNLNSGKPVDAPR 163
A +K +VT + PS+ + A ++LN+ V R
Sbjct: 166 AKALKDKVT--QYPSN-APASTVSLNTASKVPTNR 197
>sp|O42819|SEC4_CANGA Ras-related protein SEC4 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC4 PE=3
SV=1
Length = 215
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 97/148 (65%), Gaps = 8/148 (5%)
Query: 24 IWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83
+WDTAGQERFRTIT++YYRGA GII+VYD TD+ TF N+KQW + ++ +A D LLVG
Sbjct: 73 LWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVG 132
Query: 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV--TKDEK 141
NK+D + + V Y+ + A L +PF+E+SAKN NV + F T+A I++++ K
Sbjct: 133 NKSDMDT-RVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTLARLIQEKIDSNKLSG 191
Query: 142 PSSESDAK-KLNLNSGKPVDAPRSGGCC 168
P+S D +N N G D+ +S CC
Sbjct: 192 PNSGKDGNISINANKG---DSSKS-NCC 215
>sp|Q4UB16|RAB1_THEAN Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1
Length = 220
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 101/153 (66%), Gaps = 6/153 (3%)
Query: 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEE 68
++ K + T + IWDTAGQERFRTITS+YYRGAHGII VYD T++ +F+++ + WL++
Sbjct: 46 IKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQD 105
Query: 69 IDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTM 128
ID+YA NV KLL+GNK D + V AK A+ + ++E SAK +NVE+AF T+
Sbjct: 106 IDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTI 165
Query: 129 ATEIKKRVTK--DEKPSSE---SDAKKLNLNSG 156
A +K +VT+ P+S S+A K+ N G
Sbjct: 166 AKALKDKVTQYPSNAPTSTVNLSNASKVTTNRG 198
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,612,066
Number of Sequences: 539616
Number of extensions: 2311111
Number of successful extensions: 6941
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 5574
Number of HSP's gapped (non-prelim): 1158
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)