Query psy2646
Match_columns 168
No_of_seqs 126 out of 1503
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 21:32:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 4.5E-36 9.8E-41 207.4 16.4 163 3-168 37-204 (205)
2 KOG0092|consensus 100.0 5.7E-34 1.2E-38 196.3 14.9 161 5-168 35-199 (200)
3 KOG0078|consensus 100.0 2.4E-32 5.3E-37 191.2 16.4 136 4-139 41-180 (207)
4 KOG0094|consensus 100.0 2.3E-32 4.9E-37 188.7 14.2 136 2-137 49-189 (221)
5 KOG0098|consensus 100.0 1.2E-31 2.6E-36 183.8 14.1 131 9-139 44-174 (216)
6 KOG0088|consensus 100.0 1.1E-30 2.5E-35 174.8 12.0 128 10-137 52-179 (218)
7 cd04121 Rab40 Rab40 subfamily. 100.0 1.7E-29 3.7E-34 179.8 18.2 127 10-137 45-171 (189)
8 KOG0087|consensus 100.0 4.8E-30 1E-34 179.2 14.6 130 10-139 53-182 (222)
9 cd04120 Rab12 Rab12 subfamily. 100.0 3.3E-29 7.2E-34 179.9 19.2 135 4-138 29-168 (202)
10 KOG0079|consensus 100.0 5.9E-30 1.3E-34 169.5 12.8 132 4-136 37-172 (198)
11 PTZ00099 rab6; Provisional 100.0 3.7E-29 8E-34 176.2 17.7 134 3-136 8-145 (176)
12 cd04126 Rab20 Rab20 subfamily. 100.0 5.7E-29 1.2E-33 180.7 17.9 160 4-168 28-220 (220)
13 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 6.6E-29 1.4E-33 178.5 17.9 163 4-168 29-201 (201)
14 KOG0080|consensus 100.0 1.1E-29 2.3E-34 170.5 12.4 127 10-136 50-177 (209)
15 KOG0093|consensus 100.0 8.9E-30 1.9E-34 168.5 11.8 136 4-139 50-189 (193)
16 KOG0394|consensus 100.0 7.5E-29 1.6E-33 169.8 15.6 129 10-138 48-183 (210)
17 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.2E-28 4.7E-33 178.7 18.6 164 3-167 41-229 (232)
18 cd04144 Ras2 Ras2 subfamily. 100.0 4.5E-28 9.6E-33 172.8 18.1 136 4-139 28-169 (190)
19 KOG0091|consensus 100.0 1.1E-28 2.4E-33 166.0 13.3 134 5-138 38-178 (213)
20 PLN03110 Rab GTPase; Provision 100.0 1.8E-27 3.9E-32 172.8 18.9 135 4-138 41-179 (216)
21 KOG0083|consensus 100.0 9.6E-29 2.1E-33 161.4 10.4 135 4-138 27-165 (192)
22 cd04110 Rab35 Rab35 subfamily. 100.0 2.7E-27 5.9E-32 169.9 18.6 160 4-168 35-199 (199)
23 cd04112 Rab26 Rab26 subfamily. 100.0 4.9E-27 1.1E-31 167.5 18.7 158 4-168 30-191 (191)
24 KOG0095|consensus 100.0 2.3E-28 5E-33 162.4 10.4 126 10-135 46-171 (213)
25 KOG0086|consensus 100.0 1.4E-27 3E-32 159.2 13.1 136 5-140 43-178 (214)
26 cd01875 RhoG RhoG subfamily. 100.0 4.7E-27 1E-31 167.7 16.9 131 3-134 31-178 (191)
27 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.8E-27 6.1E-32 167.5 15.6 130 3-133 33-180 (182)
28 cd04133 Rop_like Rop subfamily 100.0 4.7E-27 1E-31 165.5 15.8 128 4-132 30-172 (176)
29 cd04125 RabA_like RabA-like su 100.0 1.9E-26 4.1E-31 164.0 19.0 136 4-139 29-168 (188)
30 cd04109 Rab28 Rab28 subfamily. 100.0 1.3E-26 2.8E-31 168.3 18.4 132 4-135 29-168 (215)
31 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.1E-26 2.4E-31 163.2 16.6 132 4-135 31-166 (172)
32 cd04122 Rab14 Rab14 subfamily. 99.9 2E-26 4.2E-31 160.8 16.5 125 10-134 41-165 (166)
33 cd04131 Rnd Rnd subfamily. Th 99.9 1.5E-26 3.2E-31 163.3 15.8 130 3-133 29-176 (178)
34 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 2.9E-26 6.3E-31 166.7 17.3 136 3-139 29-182 (222)
35 KOG0081|consensus 99.9 6.2E-27 1.3E-31 157.0 12.4 122 17-138 64-186 (219)
36 PTZ00369 Ras-like protein; Pro 99.9 3.1E-26 6.7E-31 163.1 16.5 134 4-137 34-171 (189)
37 cd04111 Rab39 Rab39 subfamily. 99.9 1.1E-25 2.3E-30 163.0 19.1 136 4-139 31-172 (211)
38 PLN03108 Rab family protein; P 99.9 3E-25 6.5E-30 160.6 19.3 128 10-137 45-172 (210)
39 KOG0097|consensus 99.9 9.2E-26 2E-30 148.9 13.8 136 4-139 44-179 (215)
40 cd04136 Rap_like Rap-like subf 99.9 2.2E-25 4.7E-30 154.6 16.1 129 4-132 30-162 (163)
41 cd04134 Rho3 Rho3 subfamily. 99.9 3.2E-25 7E-30 157.9 17.1 129 4-133 29-174 (189)
42 cd04118 Rab24 Rab24 subfamily. 99.9 7.5E-25 1.6E-29 156.3 19.0 135 4-139 30-172 (193)
43 cd04175 Rap1 Rap1 subgroup. T 99.9 2.3E-25 4.9E-30 155.0 15.9 130 4-133 30-163 (164)
44 cd04117 Rab15 Rab15 subfamily. 99.9 2.4E-25 5.2E-30 154.7 15.9 128 4-131 29-160 (161)
45 cd01874 Cdc42 Cdc42 subfamily. 99.9 2.4E-25 5.2E-30 156.8 16.0 129 3-132 29-174 (175)
46 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 3.6E-25 7.7E-30 154.3 16.5 131 4-134 31-165 (166)
47 cd01867 Rab8_Rab10_Rab13_like 99.9 4E-25 8.6E-30 154.3 16.8 131 4-134 32-166 (167)
48 cd01865 Rab3 Rab3 subfamily. 99.9 4.4E-25 9.5E-30 153.8 16.7 132 3-134 29-164 (165)
49 smart00176 RAN Ran (Ras-relate 99.9 3.2E-25 6.9E-30 159.1 16.3 129 4-135 24-156 (200)
50 cd04127 Rab27A Rab27a subfamil 99.9 4.6E-25 9.9E-30 155.6 16.5 119 17-135 60-179 (180)
51 cd01873 RhoBTB RhoBTB subfamil 99.9 2.9E-25 6.4E-30 158.8 15.5 115 14-131 60-194 (195)
52 cd04132 Rho4_like Rho4-like su 99.9 7.9E-25 1.7E-29 155.4 17.0 134 4-138 29-172 (187)
53 cd04128 Spg1 Spg1p. Spg1p (se 99.9 5.3E-25 1.1E-29 156.0 15.8 130 4-134 29-167 (182)
54 cd04176 Rap2 Rap2 subgroup. T 99.9 8.7E-25 1.9E-29 151.8 15.9 129 4-132 30-162 (163)
55 PF00071 Ras: Ras family; Int 99.9 8.3E-25 1.8E-29 151.7 15.7 130 4-133 28-161 (162)
56 PLN03118 Rab family protein; P 99.9 2.2E-24 4.8E-29 156.1 18.1 133 4-136 42-180 (211)
57 cd01871 Rac1_like Rac1-like su 99.9 9.7E-25 2.1E-29 153.6 15.7 127 4-131 30-173 (174)
58 cd04119 RJL RJL (RabJ-Like) su 99.9 2E-24 4.3E-29 150.2 16.2 130 4-133 29-167 (168)
59 cd01866 Rab2 Rab2 subfamily. 99.9 3.1E-24 6.6E-29 150.0 16.7 125 10-134 43-167 (168)
60 KOG0395|consensus 99.9 3.8E-24 8.2E-29 152.7 16.8 135 5-139 36-171 (196)
61 cd01868 Rab11_like Rab11-like. 99.9 3.7E-24 7.9E-29 148.9 16.3 129 4-132 32-164 (165)
62 cd04145 M_R_Ras_like M-Ras/R-R 99.9 4.6E-24 1E-28 148.0 16.3 123 10-132 40-163 (164)
63 smart00173 RAS Ras subfamily o 99.9 5.8E-24 1.3E-28 147.7 15.9 124 10-133 38-162 (164)
64 cd04140 ARHI_like ARHI subfami 99.9 6E-24 1.3E-28 148.1 15.8 128 4-131 30-163 (165)
65 cd01864 Rab19 Rab19 subfamily. 99.9 6.3E-24 1.4E-28 147.9 15.8 122 10-131 42-164 (165)
66 cd04113 Rab4 Rab4 subfamily. 99.9 5.8E-24 1.3E-28 147.4 15.5 122 10-131 39-160 (161)
67 smart00174 RHO Rho (Ras homolo 99.9 4.5E-24 9.7E-29 149.7 15.0 122 11-133 37-172 (174)
68 PLN03071 GTP-binding nuclear p 99.9 6.1E-24 1.3E-28 154.6 15.9 130 4-136 42-175 (219)
69 cd04147 Ras_dva Ras-dva subfam 99.9 1.6E-23 3.5E-28 150.2 17.4 156 10-167 37-195 (198)
70 cd04106 Rab23_lke Rab23-like s 99.9 9.6E-24 2.1E-28 146.2 15.4 127 4-131 29-161 (162)
71 cd04124 RabL2 RabL2 subfamily. 99.9 1.3E-23 2.8E-28 145.9 15.9 124 8-135 37-160 (161)
72 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.7E-23 3.6E-28 146.8 16.5 132 3-134 28-166 (170)
73 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.7E-23 3.8E-28 144.6 16.2 128 4-132 30-161 (162)
74 smart00175 RAB Rab subfamily o 99.9 1.7E-23 3.6E-28 145.2 16.1 125 10-134 39-163 (164)
75 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2.2E-23 4.9E-28 145.9 16.3 129 4-132 31-168 (170)
76 KOG0393|consensus 99.9 9.1E-24 2E-28 148.5 13.6 134 3-137 32-183 (198)
77 PLN00223 ADP-ribosylation fact 99.9 8.5E-24 1.8E-28 149.7 13.2 130 4-135 45-180 (181)
78 cd04116 Rab9 Rab9 subfamily. 99.9 3.2E-23 6.9E-28 144.9 15.6 127 4-131 34-169 (170)
79 cd04177 RSR1 RSR1 subgroup. R 99.9 4.9E-23 1.1E-27 143.9 16.5 124 10-133 39-164 (168)
80 cd04146 RERG_RasL11_like RERG/ 99.9 2.8E-23 6.1E-28 144.6 15.1 125 9-133 36-164 (165)
81 cd01860 Rab5_related Rab5-rela 99.9 5.3E-23 1.1E-27 142.7 16.4 123 10-132 40-162 (163)
82 cd00877 Ran Ran (Ras-related n 99.9 4.6E-23 9.9E-28 144.0 16.1 128 4-134 29-160 (166)
83 cd01861 Rab6 Rab6 subfamily. 99.9 4E-23 8.8E-28 143.0 15.6 122 10-131 39-160 (161)
84 cd04143 Rhes_like Rhes_like su 99.9 5.4E-23 1.2E-27 152.0 16.6 130 4-133 29-171 (247)
85 cd04101 RabL4 RabL4 (Rab-like4 99.9 6.5E-23 1.4E-27 142.4 15.6 128 4-132 31-163 (164)
86 cd04123 Rab21 Rab21 subfamily. 99.9 1.1E-22 2.4E-27 140.6 16.7 125 8-132 37-161 (162)
87 cd04158 ARD1 ARD1 subfamily. 99.9 2.5E-23 5.4E-28 145.6 13.3 130 4-135 27-163 (169)
88 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 4.7E-24 1E-28 148.7 9.6 127 3-130 27-163 (164)
89 cd04149 Arf6 Arf6 subfamily. 99.9 1.7E-23 3.8E-28 146.4 12.0 125 4-130 37-167 (168)
90 cd04103 Centaurin_gamma Centau 99.9 8.5E-23 1.8E-27 141.6 15.1 116 11-131 38-157 (158)
91 cd04148 RGK RGK subfamily. Th 99.9 5E-23 1.1E-27 150.0 14.4 130 9-140 39-170 (221)
92 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.2E-22 2.6E-27 142.6 15.9 119 11-130 39-171 (173)
93 smart00177 ARF ARF-like small 99.9 9E-24 1.9E-28 148.8 10.0 127 4-132 41-173 (175)
94 cd04142 RRP22 RRP22 subfamily. 99.9 1.8E-22 3.9E-27 144.7 16.8 135 4-138 29-179 (198)
95 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1E-23 2.2E-28 146.3 9.4 125 4-130 28-158 (159)
96 PTZ00133 ADP-ribosylation fact 99.9 2.4E-23 5.1E-28 147.5 10.4 131 4-136 45-181 (182)
97 cd01863 Rab18 Rab18 subfamily. 99.9 1E-21 2.2E-26 136.0 16.3 127 4-131 29-160 (161)
98 cd04139 RalA_RalB RalA/RalB su 99.9 1.2E-21 2.5E-26 135.8 16.4 124 10-133 38-162 (164)
99 cd01862 Rab7 Rab7 subfamily. 99.9 1.4E-21 3E-26 136.6 16.7 126 10-135 39-169 (172)
100 cd04135 Tc10 TC10 subfamily. 99.9 9.1E-22 2E-26 138.0 15.7 128 4-132 29-173 (174)
101 KOG0070|consensus 99.9 1.6E-22 3.5E-27 139.2 11.0 132 2-135 43-180 (181)
102 cd04114 Rab30 Rab30 subfamily. 99.9 1.8E-21 4E-26 135.7 16.3 122 11-132 47-168 (169)
103 cd01892 Miro2 Miro2 subfamily. 99.9 9.9E-22 2.1E-26 137.6 14.3 129 3-133 33-166 (169)
104 cd01870 RhoA_like RhoA-like su 99.9 2.7E-21 5.8E-26 135.7 16.3 128 4-132 30-174 (175)
105 cd00154 Rab Rab family. Rab G 99.9 1.8E-21 3.9E-26 133.5 15.0 122 8-129 37-158 (159)
106 cd04137 RheB Rheb (Ras Homolog 99.9 6.5E-21 1.4E-25 134.4 17.5 127 10-136 39-166 (180)
107 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.7E-21 3.6E-26 138.1 14.5 131 5-137 32-174 (183)
108 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.6E-22 3.4E-27 141.4 9.0 128 3-130 26-166 (167)
109 cd04154 Arl2 Arl2 subfamily. 99.9 8.4E-22 1.8E-26 138.3 12.6 125 4-130 42-172 (173)
110 cd04157 Arl6 Arl6 subfamily. 99.9 3.2E-22 6.9E-27 138.5 9.9 126 3-130 28-161 (162)
111 cd04129 Rho2 Rho2 subfamily. 99.9 7.8E-21 1.7E-25 135.1 16.1 125 11-136 40-176 (187)
112 PF00025 Arf: ADP-ribosylation 99.9 2.7E-21 5.8E-26 136.2 13.3 128 3-132 41-175 (175)
113 KOG0073|consensus 99.9 4.8E-21 1E-25 129.2 13.7 132 2-135 42-180 (185)
114 cd00876 Ras Ras family. The R 99.9 8.6E-21 1.9E-25 130.8 15.3 122 10-131 37-159 (160)
115 cd04151 Arl1 Arl1 subfamily. 99.9 7E-22 1.5E-26 136.7 9.7 125 4-130 27-157 (158)
116 KOG0075|consensus 99.9 8.9E-22 1.9E-26 130.6 8.6 129 3-133 48-182 (186)
117 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 6.2E-21 1.3E-25 134.1 12.4 125 4-130 43-173 (174)
118 cd04160 Arfrp1 Arfrp1 subfamil 99.9 6.1E-21 1.3E-25 132.8 12.3 125 4-130 34-166 (167)
119 cd00879 Sar1 Sar1 subfamily. 99.9 1.6E-20 3.5E-25 133.5 12.2 126 4-131 47-189 (190)
120 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.4E-20 3.1E-25 130.0 10.5 125 4-130 27-157 (158)
121 cd00157 Rho Rho (Ras homology) 99.8 1.2E-19 2.6E-24 126.6 15.2 120 10-130 38-170 (171)
122 cd01893 Miro1 Miro1 subfamily. 99.8 7.8E-20 1.7E-24 127.5 13.4 121 13-134 40-165 (166)
123 smart00178 SAR Sar1p-like memb 99.8 4.9E-20 1.1E-24 130.7 12.4 126 4-131 45-183 (184)
124 cd04156 ARLTS1 ARLTS1 subfamil 99.8 3.5E-20 7.7E-25 128.1 11.0 124 5-130 28-159 (160)
125 cd04102 RabL3 RabL3 (Rab-like3 99.8 4.4E-19 9.6E-24 127.4 15.2 116 4-119 29-176 (202)
126 PTZ00132 GTP-binding nuclear p 99.8 8.3E-19 1.8E-23 127.3 16.4 130 4-136 38-171 (215)
127 KOG0071|consensus 99.8 2.6E-20 5.7E-25 122.7 7.1 129 2-132 43-177 (180)
128 cd01890 LepA LepA subfamily. 99.8 2.9E-19 6.3E-24 125.8 12.6 111 16-132 63-176 (179)
129 KOG4252|consensus 99.8 4.5E-21 9.7E-26 131.3 2.2 126 13-139 62-187 (246)
130 KOG0072|consensus 99.8 8.8E-20 1.9E-24 120.7 7.3 131 3-135 45-181 (182)
131 cd04159 Arl10_like Arl10-like 99.8 4E-19 8.8E-24 121.9 10.4 126 3-130 27-158 (159)
132 KOG0076|consensus 99.8 2.9E-19 6.2E-24 121.7 7.8 133 4-136 53-190 (197)
133 cd01897 NOG NOG1 is a nucleola 99.8 6.9E-18 1.5E-22 117.5 12.5 122 7-132 34-167 (168)
134 cd04155 Arl3 Arl3 subfamily. 99.8 6.1E-18 1.3E-22 118.4 12.2 122 4-130 42-172 (173)
135 KOG3883|consensus 99.8 1.7E-17 3.7E-22 111.0 12.5 126 17-142 57-184 (198)
136 PLN00023 GTP-binding protein; 99.8 1.8E-17 3.8E-22 125.4 12.9 90 18-107 81-188 (334)
137 cd01898 Obg Obg subfamily. Th 99.8 1.6E-17 3.5E-22 115.8 11.7 111 20-131 48-169 (170)
138 PRK12299 obgE GTPase CgtA; Rev 99.8 3.1E-17 6.7E-22 125.9 13.5 117 18-134 204-329 (335)
139 cd01879 FeoB Ferrous iron tran 99.7 8.5E-17 1.8E-21 110.7 12.2 107 19-132 42-156 (158)
140 cd04171 SelB SelB subfamily. 99.7 7.5E-17 1.6E-21 111.6 11.7 106 19-130 50-163 (164)
141 cd01891 TypA_BipA TypA (tyrosi 99.7 9.2E-17 2E-21 114.8 10.7 125 8-136 53-191 (194)
142 KOG4423|consensus 99.7 1E-17 2.3E-22 115.4 4.3 150 19-168 74-229 (229)
143 cd01878 HflX HflX subfamily. 99.7 1.9E-16 4.1E-21 113.9 10.8 105 21-131 90-203 (204)
144 cd00882 Ras_like_GTPase Ras-li 99.7 1.9E-15 4.2E-20 102.0 14.9 119 11-129 36-156 (157)
145 TIGR01393 lepA GTP-binding pro 99.7 4.2E-16 9.1E-21 127.7 13.2 111 16-132 66-179 (595)
146 TIGR02528 EutP ethanolamine ut 99.7 2.1E-16 4.5E-21 107.3 9.3 98 23-129 38-141 (142)
147 KOG1673|consensus 99.7 6E-16 1.3E-20 103.9 11.1 123 10-134 59-187 (205)
148 cd01881 Obg_like The Obg-like 99.7 4.6E-16 1E-20 108.9 10.2 113 19-131 43-175 (176)
149 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 9.6E-16 2.1E-20 106.5 11.5 112 18-133 48-166 (168)
150 TIGR02729 Obg_CgtA Obg family 99.7 1.1E-15 2.4E-20 117.3 12.6 112 20-132 205-328 (329)
151 TIGR00231 small_GTP small GTP- 99.7 3.5E-15 7.6E-20 101.8 13.2 116 13-129 43-160 (161)
152 PRK05433 GTP-binding protein L 99.6 3.7E-15 7.9E-20 122.3 13.5 112 16-133 70-184 (600)
153 COG1100 GTPase SAR1 and relate 99.6 8E-15 1.7E-19 106.4 13.5 133 4-136 34-188 (219)
154 TIGR03156 GTP_HflX GTP-binding 99.6 2.6E-15 5.5E-20 116.2 11.3 119 6-131 222-350 (351)
155 cd01894 EngA1 EngA1 subfamily. 99.6 3.3E-15 7.1E-20 102.5 10.5 106 17-131 42-156 (157)
156 cd01888 eIF2_gamma eIF2-gamma 99.6 2.1E-15 4.6E-20 108.6 9.8 111 20-132 83-198 (203)
157 COG2229 Predicted GTPase [Gene 99.6 6.1E-15 1.3E-19 101.8 11.2 107 20-131 68-176 (187)
158 KOG0074|consensus 99.6 6.9E-16 1.5E-20 102.1 6.0 128 2-130 43-176 (185)
159 PRK04213 GTP-binding protein; 99.6 2.2E-15 4.7E-20 108.1 8.8 107 21-134 53-193 (201)
160 PRK03003 GTP-binding protein D 99.6 4.2E-15 9.1E-20 119.3 11.1 120 13-138 254-387 (472)
161 cd00881 GTP_translation_factor 99.6 1.1E-14 2.4E-19 102.9 11.6 115 14-132 56-186 (189)
162 KOG0096|consensus 99.6 2.1E-15 4.5E-20 104.4 6.7 131 2-135 37-171 (216)
163 PRK15467 ethanolamine utilizat 99.6 7.6E-15 1.7E-19 101.7 9.2 103 24-135 41-149 (158)
164 PRK12297 obgE GTPase CgtA; Rev 99.6 3.6E-14 7.8E-19 111.8 14.0 114 19-136 205-330 (424)
165 TIGR03594 GTPase_EngA ribosome 99.6 2.5E-14 5.5E-19 113.6 13.1 112 19-135 219-346 (429)
166 TIGR00437 feoB ferrous iron tr 99.6 1.5E-14 3.3E-19 118.6 11.7 116 10-132 31-154 (591)
167 TIGR00450 mnmE_trmE_thdF tRNA 99.6 2.4E-14 5.1E-19 113.8 12.1 107 18-136 249-363 (442)
168 PRK15494 era GTPase Era; Provi 99.6 2.3E-14 5E-19 110.6 11.7 121 6-134 86-217 (339)
169 cd04164 trmE TrmE (MnmE, ThdF, 99.6 3.9E-14 8.4E-19 97.1 11.5 105 15-132 44-156 (157)
170 TIGR00436 era GTP-binding prot 99.6 2.9E-14 6.2E-19 106.9 11.5 109 19-133 47-164 (270)
171 PRK05291 trmE tRNA modificatio 99.6 1.7E-14 3.8E-19 115.0 10.6 103 18-134 261-371 (449)
172 TIGR00487 IF-2 translation ini 99.6 4.7E-14 1E-18 115.3 13.3 114 7-131 123-248 (587)
173 PRK12296 obgE GTPase CgtA; Rev 99.6 4.3E-14 9.2E-19 112.9 12.4 131 6-137 192-344 (500)
174 cd01889 SelB_euk SelB subfamil 99.6 3E-14 6.6E-19 101.6 10.3 113 17-133 65-186 (192)
175 PRK03003 GTP-binding protein D 99.6 2.8E-14 6.1E-19 114.6 11.1 108 19-134 85-200 (472)
176 TIGR00475 selB selenocysteine- 99.6 4.3E-14 9.3E-19 115.8 12.2 114 15-135 45-168 (581)
177 TIGR00157 ribosome small subun 99.6 3E-14 6.5E-19 105.3 9.7 96 31-130 24-120 (245)
178 PF00009 GTP_EFTU: Elongation 99.5 5.6E-14 1.2E-18 99.9 10.0 121 7-132 55-186 (188)
179 TIGR01394 TypA_BipA GTP-bindin 99.5 4.7E-14 1E-18 115.6 10.6 123 6-132 50-190 (594)
180 PRK05306 infB translation init 99.5 5.7E-14 1.2E-18 117.7 11.0 105 19-131 336-450 (787)
181 CHL00189 infB translation init 99.5 1.3E-13 2.8E-18 114.7 12.9 106 17-132 292-409 (742)
182 PF08477 Miro: Miro-like prote 99.5 1.4E-13 2.9E-18 90.7 10.2 82 5-87 35-119 (119)
183 TIGR00483 EF-1_alpha translati 99.5 8.2E-14 1.8E-18 110.7 10.0 117 7-125 72-199 (426)
184 cd00066 G-alpha G protein alph 99.5 1.6E-13 3.6E-18 104.9 11.3 136 1-136 142-314 (317)
185 PRK11058 GTPase HflX; Provisio 99.5 2.3E-13 4.9E-18 107.7 12.3 109 21-134 246-363 (426)
186 cd00880 Era_like Era (E. coli 99.5 2.9E-13 6.3E-18 92.3 10.4 109 19-131 44-162 (163)
187 smart00275 G_alpha G protein a 99.5 1.1E-12 2.5E-17 101.2 12.9 136 1-136 165-337 (342)
188 TIGR00491 aIF-2 translation in 99.5 5E-13 1.1E-17 109.3 11.4 106 21-133 70-216 (590)
189 cd01895 EngA2 EngA2 subfamily. 99.5 1.6E-12 3.5E-17 90.3 12.4 108 20-131 50-173 (174)
190 PF02421 FeoB_N: Ferrous iron 99.5 1.7E-13 3.6E-18 94.2 6.9 116 6-128 33-156 (156)
191 PRK12317 elongation factor 1-a 99.5 3.7E-13 8.1E-18 106.9 9.9 117 7-125 71-197 (425)
192 PRK10218 GTP-binding protein; 99.5 7.6E-13 1.7E-17 108.6 11.9 122 7-132 55-194 (607)
193 TIGR03680 eif2g_arch translati 99.5 3.9E-13 8.4E-18 106.2 9.7 112 19-132 79-195 (406)
194 PRK12298 obgE GTPase CgtA; Rev 99.5 1.3E-12 2.9E-17 102.3 12.6 115 20-135 207-335 (390)
195 PRK09554 feoB ferrous iron tra 99.5 1.6E-12 3.4E-17 109.4 13.1 120 6-132 36-167 (772)
196 cd04166 CysN_ATPS CysN_ATPS su 99.5 6.6E-13 1.4E-17 95.9 9.5 114 7-123 64-184 (208)
197 PRK00093 GTP-binding protein D 99.4 1.1E-12 2.4E-17 104.5 11.5 101 19-130 48-159 (435)
198 TIGR03594 GTPase_EngA ribosome 99.4 1.3E-12 2.9E-17 103.9 11.9 114 12-134 39-161 (429)
199 cd04163 Era Era subfamily. Er 99.4 2.5E-12 5.3E-17 88.6 11.3 113 15-131 46-167 (168)
200 PRK09518 bifunctional cytidyla 99.4 1.4E-12 3E-17 109.5 11.8 115 14-136 494-624 (712)
201 PRK04000 translation initiatio 99.4 8.2E-13 1.8E-17 104.4 9.9 111 20-132 85-200 (411)
202 PRK00093 GTP-binding protein D 99.4 1.5E-12 3.3E-17 103.7 11.4 114 17-135 218-346 (435)
203 KOG0462|consensus 99.4 1.8E-12 3.9E-17 102.6 10.6 121 8-132 113-234 (650)
204 cd01883 EF1_alpha Eukaryotic e 99.4 7.1E-13 1.5E-17 96.5 7.9 114 7-122 64-194 (219)
205 PRK10512 selenocysteinyl-tRNA- 99.4 2.7E-12 5.8E-17 105.8 12.1 109 20-132 51-165 (614)
206 PRK00454 engB GTP-binding prot 99.4 5.7E-12 1.2E-16 89.8 11.5 110 20-133 70-194 (196)
207 PRK00089 era GTPase Era; Revie 99.4 5.2E-12 1.1E-16 95.7 11.7 112 18-133 51-171 (292)
208 PRK09518 bifunctional cytidyla 99.4 4.8E-12 1E-16 106.2 12.0 107 19-134 322-437 (712)
209 PRK04004 translation initiatio 99.4 9.7E-12 2.1E-16 102.0 11.6 104 22-132 73-217 (586)
210 cd04105 SR_beta Signal recogni 99.4 4.4E-12 9.6E-17 91.3 8.5 74 17-90 45-123 (203)
211 cd04168 TetM_like Tet(M)-like 99.4 1.5E-11 3.2E-16 90.6 11.3 79 7-89 51-129 (237)
212 TIGR03598 GTPase_YsxC ribosome 99.4 8.7E-12 1.9E-16 88.0 9.7 98 21-122 65-179 (179)
213 cd01885 EF2 EF2 (for archaea a 99.3 1.8E-11 4E-16 89.1 10.2 69 17-89 70-138 (222)
214 cd01884 EF_Tu EF-Tu subfamily. 99.3 4.7E-11 1E-15 85.4 11.6 111 8-122 53-172 (195)
215 cd01896 DRG The developmentall 99.3 5.1E-11 1.1E-15 87.6 12.0 114 12-132 39-225 (233)
216 cd04167 Snu114p Snu114p subfam 99.3 2.3E-11 5E-16 88.2 9.7 70 16-89 67-136 (213)
217 PRK12736 elongation factor Tu; 99.3 4.1E-11 8.9E-16 94.4 11.5 109 7-119 62-179 (394)
218 cd04165 GTPBP1_like GTPBP1-lik 99.3 4.5E-11 9.7E-16 87.3 10.7 108 18-129 82-219 (224)
219 TIGR00485 EF-Tu translation el 99.3 5.2E-11 1.1E-15 93.8 11.2 109 7-119 62-179 (394)
220 COG0532 InfB Translation initi 99.3 1.2E-10 2.7E-15 92.3 13.2 108 19-135 54-172 (509)
221 PLN00043 elongation factor 1-a 99.3 4.9E-11 1.1E-15 95.2 10.8 113 7-123 72-203 (447)
222 PRK14845 translation initiatio 99.3 7.4E-11 1.6E-15 101.4 12.4 104 22-132 528-672 (1049)
223 COG0481 LepA Membrane GTPase L 99.3 8.4E-11 1.8E-15 92.1 11.6 112 16-133 72-186 (603)
224 KOG0077|consensus 99.3 1.3E-11 2.8E-16 84.0 5.6 127 3-131 47-191 (193)
225 cd01876 YihA_EngB The YihA (En 99.2 1.8E-10 4E-15 79.4 10.6 105 21-131 46-169 (170)
226 KOG0082|consensus 99.2 8.3E-11 1.8E-15 90.0 9.5 137 1-137 176-348 (354)
227 PRK12735 elongation factor Tu; 99.2 1.5E-10 3.2E-15 91.3 11.0 108 9-120 64-180 (396)
228 PRK09866 hypothetical protein; 99.2 3.2E-10 7E-15 92.4 12.8 124 5-130 212-350 (741)
229 cd04169 RF3 RF3 subfamily. Pe 99.2 2.7E-10 5.9E-15 85.3 11.3 81 7-91 58-138 (267)
230 TIGR02034 CysN sulfate adenyly 99.2 1.5E-10 3.2E-15 91.5 10.0 114 7-123 67-187 (406)
231 COG1159 Era GTPase [General fu 99.2 2.6E-10 5.7E-15 84.8 10.6 118 13-134 47-173 (298)
232 PRK00741 prfC peptide chain re 99.2 3.4E-10 7.3E-15 92.0 12.2 79 7-89 66-144 (526)
233 KOG1489|consensus 99.2 3.5E-10 7.5E-15 84.7 11.2 122 3-130 230-364 (366)
234 PRK13351 elongation factor G; 99.2 3.1E-10 6.6E-15 95.3 11.8 83 4-90 57-139 (687)
235 PRK05124 cysN sulfate adenylyl 99.2 2E-10 4.4E-15 92.3 9.9 115 7-124 94-216 (474)
236 cd01859 MJ1464 MJ1464. This f 99.2 1.5E-10 3.2E-15 79.9 7.4 95 33-133 2-96 (156)
237 COG1217 TypA Predicted membran 99.1 3.7E-10 8E-15 88.4 9.4 124 7-134 55-196 (603)
238 PTZ00327 eukaryotic translatio 99.1 3.5E-10 7.7E-15 90.3 9.6 111 20-132 117-232 (460)
239 cd01855 YqeH YqeH. YqeH is an 99.1 5.4E-10 1.2E-14 79.6 9.3 94 33-133 24-125 (190)
240 COG1160 Predicted GTPases [Gen 99.1 6.6E-10 1.4E-14 86.9 10.2 113 10-133 41-165 (444)
241 KOG1145|consensus 99.1 1.5E-09 3.2E-14 86.5 12.1 111 12-133 194-316 (683)
242 PRK12289 GTPase RsgA; Reviewed 99.1 6E-10 1.3E-14 86.2 9.5 93 34-131 80-173 (352)
243 COG1160 Predicted GTPases [Gen 99.1 2.4E-09 5.3E-14 83.8 12.7 129 7-139 213-357 (444)
244 PRK12740 elongation factor G; 99.1 9.9E-10 2.1E-14 92.0 10.9 80 6-89 46-125 (668)
245 CHL00071 tufA elongation facto 99.1 1.3E-09 2.8E-14 86.4 10.6 108 10-121 65-181 (409)
246 COG0370 FeoB Fe2+ transport sy 99.1 1E-09 2.2E-14 89.5 10.1 125 6-137 36-168 (653)
247 PRK00049 elongation factor Tu; 99.1 2.4E-09 5.1E-14 84.5 11.8 109 8-120 63-180 (396)
248 PTZ00141 elongation factor 1- 99.1 1E-09 2.2E-14 87.7 9.7 114 7-123 72-203 (446)
249 PRK00098 GTPase RsgA; Reviewed 99.1 8.1E-10 1.7E-14 84.0 8.6 85 41-129 78-163 (298)
250 PLN03126 Elongation factor Tu; 99.1 3.1E-09 6.8E-14 85.4 12.0 108 9-120 133-249 (478)
251 cd01854 YjeQ_engC YjeQ/EngC. 99.1 1.2E-09 2.6E-14 82.6 9.1 85 41-130 76-161 (287)
252 PLN03127 Elongation factor Tu; 99.1 2.5E-09 5.5E-14 85.4 11.1 107 7-117 111-226 (447)
253 PRK05506 bifunctional sulfate 99.0 1.6E-09 3.5E-14 90.2 10.3 113 8-123 92-211 (632)
254 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 2.6E-09 5.7E-14 78.1 9.4 127 5-133 32-176 (232)
255 COG0486 ThdF Predicted GTPase 99.0 4.4E-09 9.6E-14 82.6 11.0 120 6-135 251-378 (454)
256 cd01886 EF-G Elongation factor 99.0 1.6E-09 3.4E-14 81.3 8.0 80 7-90 51-130 (270)
257 COG2262 HflX GTPases [General 99.0 9.6E-09 2.1E-13 79.5 12.1 111 19-135 239-358 (411)
258 PRK13768 GTPase; Provisional 99.0 6.8E-09 1.5E-13 77.2 10.7 109 21-132 98-246 (253)
259 KOG0090|consensus 99.0 6.6E-09 1.4E-13 73.8 10.0 110 21-131 83-237 (238)
260 cd04170 EF-G_bact Elongation f 99.0 5.7E-09 1.2E-13 78.2 10.4 113 7-125 51-165 (268)
261 PF10662 PduV-EutP: Ethanolami 99.0 5.6E-09 1.2E-13 70.5 8.7 99 23-129 39-142 (143)
262 PRK12288 GTPase RsgA; Reviewed 99.0 6.2E-09 1.3E-13 80.6 10.0 88 41-131 118-206 (347)
263 COG0536 Obg Predicted GTPase [ 99.0 1.6E-08 3.6E-13 76.6 11.6 131 3-136 193-336 (369)
264 TIGR00484 EF-G translation elo 98.9 5.8E-09 1.3E-13 87.6 9.3 81 7-91 62-142 (689)
265 PRK12739 elongation factor G; 98.9 1.2E-08 2.6E-13 85.7 11.2 79 7-89 60-138 (691)
266 PF00503 G-alpha: G-protein al 98.9 5E-09 1.1E-13 82.6 7.9 131 2-132 217-389 (389)
267 COG2895 CysN GTPases - Sulfate 98.9 1.4E-08 2.9E-13 77.3 9.7 113 7-122 73-192 (431)
268 TIGR00503 prfC peptide chain r 98.9 9.1E-09 2E-13 83.7 9.5 80 7-90 67-146 (527)
269 cd01899 Ygr210 Ygr210 subfamil 98.9 2.2E-08 4.7E-13 76.7 10.5 54 76-133 214-269 (318)
270 KOG1707|consensus 98.9 3.4E-09 7.4E-14 84.9 5.7 119 16-134 52-176 (625)
271 TIGR03597 GTPase_YqeH ribosome 98.9 1.3E-08 2.8E-13 79.4 8.8 95 30-131 50-151 (360)
272 COG5256 TEF1 Translation elong 98.9 1.3E-08 2.9E-13 78.8 8.3 118 5-124 70-202 (428)
273 COG0218 Predicted GTPase [Gene 98.8 8.6E-08 1.9E-12 67.9 11.4 120 6-133 59-197 (200)
274 COG1084 Predicted GTPase [Gene 98.8 4.5E-08 9.7E-13 73.9 10.1 124 7-134 202-337 (346)
275 PF09439 SRPRB: Signal recogni 98.8 1.1E-08 2.4E-13 72.0 5.3 74 18-91 47-127 (181)
276 KOG1423|consensus 98.8 1E-07 2.2E-12 71.4 10.4 121 11-134 111-272 (379)
277 cd01858 NGP_1 NGP-1. Autoanti 98.7 6.5E-08 1.4E-12 66.8 8.1 91 40-133 5-95 (157)
278 cd04104 p47_IIGP_like p47 (47- 98.7 4E-07 8.7E-12 65.2 11.2 109 21-136 53-187 (197)
279 cd01849 YlqF_related_GTPase Yl 98.7 1.5E-07 3.3E-12 64.8 8.0 84 45-132 1-84 (155)
280 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 1.4E-07 3E-12 64.1 6.3 76 39-120 7-84 (141)
281 PF03029 ATP_bind_1: Conserved 98.6 9.8E-08 2.1E-12 70.3 5.7 112 21-132 92-236 (238)
282 KOG1144|consensus 98.6 2.1E-07 4.6E-12 76.8 8.0 108 22-136 542-690 (1064)
283 PRK00007 elongation factor G; 98.6 3.5E-07 7.6E-12 77.0 9.1 106 7-118 62-171 (693)
284 cd01850 CDC_Septin CDC/Septin. 98.6 6.1E-07 1.3E-11 67.6 9.4 98 15-116 58-185 (276)
285 COG5257 GCD11 Translation init 98.6 2.1E-07 4.6E-12 70.2 6.7 114 20-135 86-204 (415)
286 TIGR00490 aEF-2 translation el 98.6 1.3E-07 2.8E-12 79.9 6.3 72 14-89 80-151 (720)
287 KOG0458|consensus 98.6 4.3E-07 9.4E-12 73.1 8.8 118 4-124 239-373 (603)
288 cd01856 YlqF YlqF. Proteins o 98.5 3.8E-07 8.3E-12 63.9 6.5 89 37-133 13-101 (171)
289 TIGR00101 ureG urease accessor 98.5 1.9E-06 4.2E-11 61.9 9.9 104 19-133 91-196 (199)
290 PRK01889 GTPase RsgA; Reviewed 98.5 9.8E-07 2.1E-11 68.8 9.0 83 41-129 110-193 (356)
291 COG1163 DRG Predicted GTPase [ 98.5 6.7E-06 1.5E-10 62.3 12.4 117 11-135 101-291 (365)
292 TIGR00073 hypB hydrogenase acc 98.4 3.7E-06 8.1E-11 60.7 10.2 101 20-131 103-205 (207)
293 COG3276 SelB Selenocysteine-sp 98.4 3.3E-06 7.1E-11 66.2 10.3 120 7-133 37-162 (447)
294 TIGR03596 GTPase_YlqF ribosome 98.4 2E-06 4.4E-11 64.8 8.6 90 38-135 16-105 (276)
295 KOG1532|consensus 98.4 7.9E-06 1.7E-10 60.7 11.3 118 18-135 114-266 (366)
296 KOG0085|consensus 98.4 1.2E-07 2.6E-12 68.6 1.5 138 1-138 180-354 (359)
297 KOG1490|consensus 98.4 2.1E-06 4.6E-11 68.3 8.3 123 12-135 207-343 (620)
298 PRK13796 GTPase YqeH; Provisio 98.4 3.6E-06 7.7E-11 65.9 9.5 84 41-131 66-157 (365)
299 PRK09435 membrane ATPase/prote 98.4 3E-06 6.6E-11 65.2 8.9 112 17-139 146-266 (332)
300 PRK09602 translation-associate 98.4 6.5E-06 1.4E-10 65.0 10.9 52 76-131 217-269 (396)
301 COG4108 PrfC Peptide chain rel 98.4 2.9E-06 6.2E-11 66.6 8.5 99 8-112 69-167 (528)
302 KOG1707|consensus 98.3 7.8E-06 1.7E-10 66.1 10.7 125 5-134 459-584 (625)
303 KOG0099|consensus 98.3 2.5E-06 5.4E-11 62.9 6.9 134 2-135 184-371 (379)
304 PRK09563 rbgA GTPase YlqF; Rev 98.3 4.7E-06 1E-10 63.2 8.5 90 38-135 19-108 (287)
305 COG3596 Predicted GTPase [Gene 98.3 5.4E-06 1.2E-10 61.5 7.8 112 20-134 87-223 (296)
306 KOG0705|consensus 98.3 8.2E-06 1.8E-10 65.6 9.3 130 9-143 66-199 (749)
307 COG1162 Predicted GTPases [Gen 98.2 1.4E-05 3E-10 60.3 9.7 96 33-131 69-165 (301)
308 TIGR00750 lao LAO/AO transport 98.2 4.2E-06 9.1E-11 63.8 6.8 105 18-133 125-238 (300)
309 PLN00116 translation elongatio 98.2 4E-06 8.7E-11 72.1 6.8 68 18-89 96-163 (843)
310 PRK07560 elongation factor EF- 98.2 4.8E-06 1E-10 70.7 6.8 70 16-89 83-152 (731)
311 PTZ00416 elongation factor 2; 98.2 4.6E-06 9.9E-11 71.7 6.3 67 19-89 91-157 (836)
312 KOG1191|consensus 98.1 6.7E-06 1.4E-10 65.3 6.5 132 7-139 303-456 (531)
313 COG4917 EutP Ethanolamine util 98.1 6.9E-06 1.5E-10 53.9 5.5 98 24-130 41-143 (148)
314 PF01926 MMR_HSR1: 50S ribosom 98.1 1.6E-05 3.6E-10 51.8 7.2 60 20-85 47-116 (116)
315 cd01852 AIG1 AIG1 (avrRpt2-ind 98.1 7.7E-05 1.7E-09 53.3 11.2 118 18-137 47-188 (196)
316 COG0480 FusA Translation elong 98.1 5.9E-06 1.3E-10 69.2 5.8 78 7-88 62-140 (697)
317 KOG3886|consensus 98.1 1.1E-05 2.5E-10 58.4 6.4 84 6-90 38-130 (295)
318 KOG3905|consensus 97.9 0.00022 4.8E-09 54.4 10.9 114 20-133 100-290 (473)
319 KOG0461|consensus 97.9 0.00015 3.2E-09 55.8 10.0 114 17-135 67-191 (522)
320 KOG0468|consensus 97.9 1.8E-05 3.8E-10 65.2 5.1 69 16-88 193-261 (971)
321 smart00010 small_GTPase Small 97.9 8.9E-05 1.9E-09 48.4 7.7 80 33-122 36-115 (124)
322 cd01882 BMS1 Bms1. Bms1 is an 97.9 9.9E-05 2.1E-09 54.0 8.6 96 18-120 81-183 (225)
323 PF06858 NOG1: Nucleolar GTP-b 97.8 0.0001 2.2E-09 41.7 5.9 44 43-87 13-58 (58)
324 PF05783 DLIC: Dynein light in 97.7 0.00057 1.2E-08 55.2 11.1 115 20-134 73-265 (472)
325 COG5258 GTPBP1 GTPase [General 97.7 0.00044 9.5E-09 53.9 9.5 106 20-129 201-335 (527)
326 COG0050 TufB GTPases - transla 97.6 0.00042 9E-09 52.3 8.2 126 7-139 62-203 (394)
327 cd03110 Fer4_NifH_child This p 97.6 0.00066 1.4E-08 47.7 9.0 86 18-112 91-176 (179)
328 PF00350 Dynamin_N: Dynamin fa 97.6 0.00014 3.1E-09 50.3 5.4 64 20-86 101-168 (168)
329 KOG0466|consensus 97.6 5.6E-05 1.2E-09 57.1 3.4 111 21-133 126-241 (466)
330 smart00053 DYNc Dynamin, GTPas 97.6 0.00036 7.8E-09 51.5 6.9 68 20-90 125-206 (240)
331 TIGR02836 spore_IV_A stage IV 97.5 0.0043 9.4E-08 49.3 12.0 118 6-128 77-232 (492)
332 TIGR00991 3a0901s02IAP34 GTP-b 97.4 0.0011 2.4E-08 50.6 8.1 78 18-95 84-172 (313)
333 COG0378 HypB Ni2+-binding GTPa 97.3 0.00064 1.4E-08 48.2 5.4 102 20-132 97-200 (202)
334 KOG0465|consensus 97.3 0.0016 3.4E-08 53.5 7.8 74 13-90 97-170 (721)
335 KOG0464|consensus 97.3 8.7E-05 1.9E-09 58.3 0.7 79 7-89 89-167 (753)
336 KOG1424|consensus 97.2 0.00052 1.1E-08 55.1 4.8 80 33-117 165-244 (562)
337 KOG3887|consensus 97.2 0.0047 1E-07 45.5 9.2 116 19-136 74-205 (347)
338 PRK10463 hydrogenase nickel in 97.2 0.001 2.2E-08 50.4 5.9 56 76-131 230-287 (290)
339 COG1703 ArgK Putative periplas 97.2 0.0067 1.5E-07 46.0 9.7 112 17-142 141-263 (323)
340 KOG1143|consensus 97.1 0.0058 1.3E-07 47.8 9.3 101 20-124 249-379 (591)
341 PTZ00258 GTP-binding protein; 97.1 0.012 2.6E-07 46.6 10.8 45 75-119 219-266 (390)
342 KOG0467|consensus 97.0 0.0017 3.8E-08 54.5 5.5 71 13-87 65-135 (887)
343 cd01853 Toc34_like Toc34-like 96.9 0.0051 1.1E-07 45.8 7.5 73 17-90 76-163 (249)
344 cd04178 Nucleostemin_like Nucl 96.9 0.0024 5.2E-08 44.8 5.3 45 45-91 1-45 (172)
345 KOG1954|consensus 96.9 0.00093 2E-08 51.9 3.1 68 21-91 148-226 (532)
346 PF03308 ArgK: ArgK protein; 96.8 0.0015 3.3E-08 48.4 3.5 104 20-137 122-234 (266)
347 PF04548 AIG1: AIG1 family; I 96.8 0.0097 2.1E-07 43.1 7.6 120 14-136 45-189 (212)
348 KOG0460|consensus 96.7 0.009 1.9E-07 46.1 6.9 117 20-139 117-247 (449)
349 COG3640 CooC CO dehydrogenase 96.6 0.012 2.6E-07 43.1 6.8 63 20-89 134-198 (255)
350 KOG0459|consensus 96.6 0.0044 9.5E-08 48.7 4.8 116 10-125 147-278 (501)
351 TIGR00064 ftsY signal recognit 96.5 0.024 5.2E-07 42.7 8.3 98 18-128 153-263 (272)
352 PRK09601 GTP-binding protein Y 96.3 0.072 1.6E-06 41.8 10.3 45 75-119 198-243 (364)
353 KOG1486|consensus 96.3 0.085 1.8E-06 39.3 9.7 52 77-135 239-290 (364)
354 COG1161 Predicted GTPases [Gen 96.2 0.021 4.6E-07 44.1 6.8 93 28-127 18-111 (322)
355 KOG0448|consensus 96.1 0.032 6.9E-07 46.7 7.7 93 21-117 207-310 (749)
356 PRK10416 signal recognition pa 96.1 0.049 1.1E-06 42.0 8.4 96 18-126 195-303 (318)
357 KOG0463|consensus 96.1 0.019 4.2E-07 45.0 5.9 100 21-124 220-349 (641)
358 PF11111 CENP-M: Centromere pr 96.0 0.15 3.2E-06 35.7 9.6 91 43-134 64-154 (176)
359 PF05049 IIGP: Interferon-indu 95.8 0.058 1.3E-06 42.5 7.8 106 21-133 87-218 (376)
360 cd02038 FleN-like FleN is a me 95.8 0.045 9.9E-07 36.8 6.3 65 20-88 45-109 (139)
361 cd01900 YchF YchF subfamily. 95.7 0.079 1.7E-06 40.0 7.8 34 21-54 63-103 (274)
362 KOG0410|consensus 95.5 0.015 3.3E-07 44.7 3.3 105 20-135 226-343 (410)
363 PHA02518 ParA-like protein; Pr 95.5 0.094 2E-06 37.5 7.4 67 18-87 75-144 (211)
364 COG1149 MinD superfamily P-loo 95.4 0.21 4.6E-06 37.5 8.9 80 20-111 164-243 (284)
365 KOG2423|consensus 95.3 0.11 2.3E-06 41.2 7.4 93 35-130 202-297 (572)
366 cd03111 CpaE_like This protein 95.3 0.11 2.3E-06 33.3 6.3 62 21-85 44-106 (106)
367 COG4963 CpaE Flp pilus assembl 95.3 0.17 3.6E-06 39.6 8.3 70 18-90 216-285 (366)
368 KOG2486|consensus 95.1 0.042 9E-07 41.4 4.5 104 20-129 183-312 (320)
369 KOG2484|consensus 95.1 0.041 9E-07 43.3 4.5 55 36-94 139-195 (435)
370 PRK14974 cell division protein 95.1 0.19 4.2E-06 39.1 8.2 100 19-131 222-328 (336)
371 TIGR01425 SRP54_euk signal rec 95.0 0.15 3.3E-06 40.9 7.8 86 19-114 182-273 (429)
372 cd02036 MinD Bacterial cell di 94.9 0.36 7.8E-06 33.4 8.7 84 21-111 64-147 (179)
373 KOG0469|consensus 94.9 0.043 9.3E-07 44.7 4.2 69 16-88 94-162 (842)
374 PF14331 ImcF-related_N: ImcF- 94.4 0.18 3.9E-06 37.9 6.4 95 43-137 25-135 (266)
375 KOG0447|consensus 94.4 0.45 9.7E-06 39.5 8.9 103 13-118 404-526 (980)
376 TIGR01968 minD_bact septum sit 93.8 0.41 8.8E-06 35.3 7.3 65 19-88 111-175 (261)
377 TIGR00993 3a0901s04IAP86 chlor 93.8 0.45 9.8E-06 40.4 8.0 72 19-90 165-250 (763)
378 TIGR01969 minD_arch cell divis 93.7 1.2 2.5E-05 32.7 9.7 65 18-88 107-172 (251)
379 PRK00771 signal recognition pa 93.4 0.59 1.3E-05 37.8 8.0 86 20-115 176-267 (437)
380 cd02117 NifH_like This family 93.4 1.6 3.4E-05 31.4 9.7 90 18-112 115-207 (212)
381 TIGR03371 cellulose_yhjQ cellu 93.4 0.79 1.7E-05 33.6 8.3 66 21-89 116-181 (246)
382 TIGR00959 ffh signal recogniti 93.2 0.58 1.2E-05 37.7 7.7 88 18-115 181-274 (428)
383 PRK12727 flagellar biosynthesi 93.2 1.1 2.4E-05 37.1 9.3 96 19-126 428-529 (559)
384 TIGR03348 VI_IcmF type VI secr 93.2 0.17 3.8E-06 45.7 5.2 70 21-90 162-257 (1169)
385 PRK13505 formate--tetrahydrofo 93.1 0.72 1.6E-05 38.1 8.1 70 59-133 358-429 (557)
386 PF00448 SRP54: SRP54-type pro 93.1 0.5 1.1E-05 33.9 6.5 92 19-123 83-181 (196)
387 cd02037 MRP-like MRP (Multiple 92.9 1.1 2.5E-05 30.9 8.0 88 18-111 66-162 (169)
388 PRK13185 chlL protochlorophyll 92.7 1.9 4.2E-05 32.2 9.5 68 18-87 116-185 (270)
389 CHL00175 minD septum-site dete 92.6 0.87 1.9E-05 34.3 7.6 65 19-88 126-190 (281)
390 KOG4273|consensus 92.6 0.84 1.8E-05 34.1 7.1 89 41-131 76-220 (418)
391 PF00735 Septin: Septin; Inte 92.5 2 4.4E-05 32.6 9.5 65 43-112 113-180 (281)
392 PRK13849 putative crown gall t 92.1 1 2.2E-05 33.1 7.3 67 18-87 82-151 (231)
393 KOG1547|consensus 91.9 2.5 5.4E-05 31.6 8.8 100 16-120 100-230 (336)
394 cd03112 CobW_like The function 91.9 0.35 7.5E-06 33.3 4.3 64 19-88 86-158 (158)
395 COG5019 CDC3 Septin family pro 91.6 1.3 2.8E-05 34.8 7.4 103 5-111 63-199 (373)
396 PRK10818 cell division inhibit 91.2 1.2 2.7E-05 33.2 7.0 67 19-88 113-185 (270)
397 PRK10867 signal recognition pa 91.0 1.1 2.3E-05 36.3 6.7 88 18-115 182-275 (433)
398 PF01656 CbiA: CobQ/CobB/MinD/ 90.8 0.57 1.2E-05 32.8 4.7 68 20-90 95-162 (195)
399 PF07015 VirC1: VirC1 protein; 90.7 1.2 2.6E-05 32.8 6.2 103 19-126 83-187 (231)
400 cd02042 ParA ParA and ParB of 90.6 1.3 2.7E-05 27.8 5.7 45 20-67 40-84 (104)
401 cd02032 Bchl_like This family 90.5 4 8.7E-05 30.4 9.3 68 19-88 115-184 (267)
402 PRK05703 flhF flagellar biosyn 89.9 5.5 0.00012 32.2 9.9 102 19-132 299-408 (424)
403 cd03115 SRP The signal recogni 89.5 2.9 6.4E-05 28.9 7.4 85 19-113 82-172 (173)
404 cd03114 ArgK-like The function 89.5 1.1 2.5E-05 30.4 5.1 58 19-87 91-148 (148)
405 TIGR01007 eps_fam capsular exo 89.4 1.8 3.8E-05 30.9 6.3 68 18-89 126-193 (204)
406 COG0523 Putative GTPases (G3E 88.1 3.1 6.6E-05 32.4 7.1 99 20-126 85-194 (323)
407 PRK06731 flhF flagellar biosyn 88.0 4.4 9.4E-05 30.7 7.7 92 19-122 154-251 (270)
408 cd02040 NifH NifH gene encodes 87.2 10 0.00022 28.1 9.4 67 18-85 115-184 (270)
409 COG0552 FtsY Signal recognitio 87.1 4.6 9.9E-05 31.5 7.4 95 18-125 220-327 (340)
410 TIGR01281 DPOR_bchL light-inde 86.9 11 0.00023 28.1 10.2 68 19-88 115-184 (268)
411 PRK12723 flagellar biosynthesi 86.9 7.3 0.00016 31.1 8.8 105 18-134 253-365 (388)
412 PRK14723 flhF flagellar biosyn 86.7 6 0.00013 34.4 8.6 98 19-126 263-368 (767)
413 cd02033 BchX Chlorophyllide re 86.6 13 0.00029 28.9 12.6 111 19-137 147-277 (329)
414 KOG2655|consensus 86.6 8.3 0.00018 30.5 8.7 70 43-118 129-202 (366)
415 PF09547 Spore_IV_A: Stage IV 86.2 17 0.00037 29.6 12.1 77 46-127 148-231 (492)
416 KOG3929|consensus 85.7 1.9 4E-05 32.6 4.5 15 76-90 190-204 (363)
417 PRK12726 flagellar biosynthesi 85.7 3.9 8.5E-05 32.7 6.6 97 19-127 285-388 (407)
418 PRK11889 flhF flagellar biosyn 84.6 6.6 0.00014 31.7 7.4 91 19-121 320-416 (436)
419 CHL00072 chlL photochlorophyll 84.0 17 0.00036 27.7 10.4 67 19-87 115-183 (290)
420 PRK11670 antiporter inner memb 83.5 14 0.0003 29.3 8.9 67 18-88 214-281 (369)
421 COG1419 FlhF Flagellar GTP-bin 83.3 12 0.00025 30.1 8.3 98 18-127 280-384 (407)
422 PF09419 PGP_phosphatase: Mito 83.2 13 0.00029 26.0 9.8 86 41-129 36-128 (168)
423 PRK14722 flhF flagellar biosyn 83.0 9.6 0.00021 30.3 7.8 99 19-123 215-322 (374)
424 PRK14721 flhF flagellar biosyn 82.8 8.2 0.00018 31.2 7.4 104 19-134 269-379 (420)
425 TIGR02016 BchX chlorophyllide 82.1 20 0.00044 27.3 12.3 112 19-138 122-254 (296)
426 PRK06995 flhF flagellar biosyn 82.1 6.4 0.00014 32.4 6.6 96 20-127 335-437 (484)
427 PF01268 FTHFS: Formate--tetra 81.2 1.7 3.7E-05 36.0 3.1 72 74-147 369-442 (557)
428 cd00477 FTHFS Formyltetrahydro 81.1 8.4 0.00018 31.8 6.9 58 74-133 354-413 (524)
429 KOG3022|consensus 80.1 24 0.00053 26.9 11.1 119 15-137 152-296 (300)
430 PRK13232 nifH nitrogenase redu 79.9 23 0.00049 26.5 9.0 69 18-87 115-185 (273)
431 COG0012 Predicted GTPase, prob 79.4 7 0.00015 30.9 5.8 42 75-117 205-248 (372)
432 PRK13507 formate--tetrahydrofo 78.9 12 0.00026 31.3 7.1 58 74-133 399-458 (587)
433 TIGR03815 CpaE_hom_Actino heli 78.7 7.4 0.00016 29.9 5.9 83 18-112 203-285 (322)
434 PF10087 DUF2325: Uncharacteri 78.3 8.6 0.00019 24.0 5.1 22 37-58 42-63 (97)
435 PF03193 DUF258: Protein of un 77.3 5.9 0.00013 27.5 4.4 22 110-131 37-58 (161)
436 PRK13705 plasmid-partitioning 77.3 14 0.00031 29.4 7.2 69 18-89 233-307 (388)
437 KOG0780|consensus 76.7 8.3 0.00018 30.9 5.5 42 17-58 181-228 (483)
438 cd02035 ArsA ArsA ATPase funct 76.7 9.3 0.0002 27.6 5.6 67 20-89 114-183 (217)
439 PRK11537 putative GTP-binding 76.0 13 0.00029 28.8 6.5 85 20-114 91-186 (318)
440 TIGR03029 EpsG chain length de 75.9 11 0.00023 28.3 5.9 62 18-84 211-273 (274)
441 COG5192 BMS1 GTP-binding prote 75.1 26 0.00056 29.8 8.1 99 13-118 106-211 (1077)
442 COG0541 Ffh Signal recognition 74.7 20 0.00044 29.1 7.2 84 19-114 182-273 (451)
443 TIGR01287 nifH nitrogenase iro 74.4 34 0.00073 25.6 9.5 66 19-85 115-183 (275)
444 PRK12724 flagellar biosynthesi 73.9 25 0.00055 28.5 7.7 92 18-121 298-398 (432)
445 TIGR01005 eps_transp_fam exopo 73.5 8.6 0.00019 33.4 5.4 68 18-89 654-721 (754)
446 PHA02519 plasmid partition pro 73.1 25 0.00055 28.1 7.6 69 18-89 233-307 (387)
447 KOG2485|consensus 71.9 12 0.00027 28.9 5.2 48 38-91 41-88 (335)
448 KOG1534|consensus 71.4 8.4 0.00018 28.3 4.1 70 21-90 99-178 (273)
449 PRK13869 plasmid-partitioning 71.0 19 0.00041 28.9 6.4 67 18-88 250-326 (405)
450 COG2759 MIS1 Formyltetrahydrof 68.7 34 0.00074 28.1 7.2 59 74-134 367-427 (554)
451 PRK13506 formate--tetrahydrofo 68.4 31 0.00067 29.0 7.1 58 74-133 391-451 (578)
452 TIGR03453 partition_RepA plasm 68.1 30 0.00066 27.4 7.1 69 18-88 233-309 (387)
453 PF02492 cobW: CobW/HypB/UreG, 67.7 7.5 0.00016 27.1 3.2 68 19-91 84-156 (178)
454 PLN02759 Formate--tetrahydrofo 67.6 26 0.00057 29.7 6.6 58 74-133 448-508 (637)
455 TIGR02475 CobW cobalamin biosy 64.8 51 0.0011 25.8 7.6 98 20-126 93-223 (341)
456 PF03709 OKR_DC_1_N: Orn/Lys/A 64.1 36 0.00078 21.9 5.8 43 42-86 35-77 (115)
457 PRK13230 nitrogenase reductase 63.9 59 0.0013 24.3 8.9 52 19-71 116-168 (279)
458 PRK10037 cell division protein 61.1 39 0.00084 24.9 6.2 35 18-54 116-150 (250)
459 KOG1487|consensus 59.5 6.1 0.00013 29.9 1.6 52 76-134 231-282 (358)
460 PTZ00386 formyl tetrahydrofola 58.6 79 0.0017 26.9 7.8 58 74-133 435-496 (625)
461 KOG0052|consensus 58.2 35 0.00075 27.3 5.5 76 14-90 76-156 (391)
462 PF08438 MMR_HSR1_C: GTPase of 57.7 13 0.00028 24.1 2.7 31 82-116 1-32 (109)
463 cd01983 Fer4_NifH The Fer4_Nif 56.4 40 0.00086 19.9 6.3 70 10-84 28-99 (99)
464 PRK13231 nitrogenase reductase 55.6 82 0.0018 23.3 9.9 66 19-87 113-179 (264)
465 cd00550 ArsA_ATPase Oxyanion-t 55.1 53 0.0012 24.4 6.0 68 18-89 123-202 (254)
466 TIGR03488 cas_Cas5p CRISPR-ass 54.9 2.3 5E-05 29.7 -1.2 89 5-105 85-176 (237)
467 PRK13235 nifH nitrogenase redu 54.7 88 0.0019 23.3 9.6 68 18-86 116-186 (274)
468 TIGR03018 pepcterm_TyrKin exop 52.9 67 0.0014 22.9 6.1 47 21-69 150-196 (207)
469 PRK11519 tyrosine kinase; Prov 52.7 44 0.00095 29.1 5.9 66 18-88 634-700 (719)
470 COG1010 CobJ Precorrin-3B meth 52.3 52 0.0011 24.5 5.3 47 40-86 151-197 (249)
471 PF08468 MTS_N: Methyltransfer 52.0 42 0.00091 23.1 4.6 43 41-87 67-109 (155)
472 PRK04452 acetyl-CoA decarbonyl 51.2 1.2E+02 0.0025 23.8 8.5 66 18-85 48-133 (319)
473 cd04170 EF-G_bact Elongation f 50.9 16 0.00034 27.3 2.6 25 108-132 241-265 (268)
474 COG3523 IcmF Type VI protein s 50.0 35 0.00076 31.5 4.9 70 21-90 175-270 (1188)
475 COG0012 Predicted GTPase, prob 47.1 27 0.00058 27.8 3.4 37 19-55 66-109 (372)
476 COG2179 Predicted hydrolase of 46.6 85 0.0018 22.1 5.4 27 56-85 45-71 (175)
477 cd01851 GBP Guanylate-binding 45.4 55 0.0012 23.8 4.7 40 18-57 58-105 (224)
478 TIGR00092 GTP-binding protein 44.6 69 0.0015 25.5 5.3 35 20-54 67-108 (368)
479 COG1908 FrhD Coenzyme F420-red 42.8 67 0.0015 21.3 4.2 63 77-139 55-128 (132)
480 KOG0781|consensus 42.7 65 0.0014 26.8 4.9 93 17-114 464-565 (587)
481 KOG0446|consensus 41.3 4.8 0.0001 34.4 -1.6 68 20-89 132-212 (657)
482 TIGR03566 FMN_reduc_MsuE FMN r 41.3 40 0.00088 23.3 3.4 47 39-85 64-110 (174)
483 cd04169 RF3 RF3 subfamily. Pe 41.0 23 0.00049 26.7 2.2 25 108-132 240-264 (267)
484 COG0455 flhG Antiactivator of 40.6 1.6E+02 0.0034 22.2 7.8 63 21-87 114-177 (262)
485 KOG2743|consensus 40.5 21 0.00045 27.8 1.9 73 18-93 144-228 (391)
486 PF10609 ParA: ParA/MinD ATPas 39.2 90 0.0019 19.0 5.6 60 21-85 2-63 (81)
487 cd01886 EF-G Elongation factor 39.1 26 0.00056 26.4 2.2 25 108-132 243-267 (270)
488 PRK13233 nifH nitrogenase redu 38.4 1.7E+02 0.0036 21.8 11.5 68 18-86 117-187 (275)
489 cd02067 B12-binding B12 bindin 38.2 85 0.0018 20.0 4.4 40 43-85 50-90 (119)
490 PRK09841 cryptic autophosphory 38.1 1.1E+02 0.0025 26.6 6.2 66 18-88 639-705 (726)
491 KOG2052|consensus 37.4 76 0.0017 26.1 4.6 49 21-69 212-260 (513)
492 PF12098 DUF3574: Protein of u 37.1 64 0.0014 20.7 3.4 40 22-62 38-77 (104)
493 PF03641 Lysine_decarbox: Poss 36.9 1E+02 0.0023 20.3 4.7 44 39-84 49-92 (133)
494 TIGR00640 acid_CoA_mut_C methy 36.0 1.3E+02 0.0028 20.0 9.7 98 22-134 31-129 (132)
495 PRK13660 hypothetical protein; 35.9 1.6E+02 0.0035 20.9 5.7 14 41-54 127-140 (182)
496 PRK06756 flavodoxin; Provision 35.6 77 0.0017 21.1 4.0 45 40-84 46-91 (148)
497 PTZ00393 protein tyrosine phos 35.3 1.3E+02 0.0028 22.5 5.2 30 4-33 76-105 (241)
498 PF12327 FtsZ_C: FtsZ family, 35.0 1.1E+02 0.0025 18.9 6.0 52 35-87 27-78 (95)
499 PF05014 Nuc_deoxyrib_tr: Nucl 34.8 1.1E+02 0.0024 19.4 4.4 42 40-88 58-101 (113)
500 PF14784 ECIST_Cterm: C-termin 33.7 93 0.002 20.7 3.9 40 42-81 82-123 (126)
No 1
>KOG0084|consensus
Probab=100.00 E-value=4.5e-36 Score=207.39 Aligned_cols=163 Identities=55% Similarity=0.842 Sum_probs=141.3
Q ss_pred ccccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc
Q psy2646 3 LLLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78 (168)
Q Consensus 3 ~~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 78 (168)
.+..|+| .+++.++++.+.||||||+||+||+.+...||++|+|+|+|||+++..||+.+..|+.++.++...++|
T Consensus 37 ~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~ 116 (205)
T KOG0084|consen 37 SYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVP 116 (205)
T ss_pred hhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCC
Confidence 4566777 567778999999999999999999999999999999999999999999999999999999998877899
Q ss_pred EEEEEecCCCCCCcccCHHHHHHHHHhcCCC-EEEEeccCCCCHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccCCCC
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIP-FLETSAKNGANVEQAFLTMATEIKKRVTKDEKPSSESDAKKLNLNSGK 157 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (168)
.++||||+|+.+.+.++.++++.|+..++++ ++++||+++.|++++|..|...+..+.......+. .....-+..++
T Consensus 117 ~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~~~--~~~~~~ql~~~ 194 (205)
T KOG0084|consen 117 KLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHVKWST--ASLESVQLKGT 194 (205)
T ss_pred eEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCCCCCc--CCCCceeeCCC
Confidence 9999999999999999999999999999998 99999999999999999999999999887777664 22222233333
Q ss_pred CCCCCCCCCCC
Q psy2646 158 PVDAPRSGGCC 168 (168)
Q Consensus 158 ~~~~~~~~~c~ 168 (168)
+. ....++||
T Consensus 195 p~-~~~~~~~C 204 (205)
T KOG0084|consen 195 PV-KKSNGGCC 204 (205)
T ss_pred Cc-ccccCCCC
Confidence 33 35666688
No 2
>KOG0092|consensus
Probab=100.00 E-value=5.7e-34 Score=196.32 Aligned_cols=161 Identities=36% Similarity=0.661 Sum_probs=134.3
Q ss_pred ccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE
Q psy2646 5 LPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKL 80 (168)
Q Consensus 5 ~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 80 (168)
-||++ ++.+.+++..++|.||||+|+++|+++.+.||++|+++|+|||+++.+||..+..|+..+.+...++.-+.
T Consensus 35 e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~via 114 (200)
T KOG0092|consen 35 EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIA 114 (200)
T ss_pred ccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 57777 67777889999999999999999999999999999999999999999999999999999987766667788
Q ss_pred EEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccCCCCCCC
Q psy2646 81 LVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPSSESDAKKLNLNSGKPVD 160 (168)
Q Consensus 81 vv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (168)
++|||+||.+.+.+..+++..+++..+..++|+||+++.|++++|..+.+.+......... +.+.++..+-.++.+ .
T Consensus 115 lvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~~-~~~~~~~g~~l~~~~--~ 191 (200)
T KOG0092|consen 115 LVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQERQ-GLPNRRQGVDLNSNQ--E 191 (200)
T ss_pred EecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCccccccc-cccccccceecccCC--C
Confidence 8999999999899999999999999999999999999999999999999988776554433 112221333223222 3
Q ss_pred CCCCCCCC
Q psy2646 161 APRSGGCC 168 (168)
Q Consensus 161 ~~~~~~c~ 168 (168)
..++++||
T Consensus 192 ~~~~~~~C 199 (200)
T KOG0092|consen 192 PARPSGCC 199 (200)
T ss_pred CcCcCCcC
Confidence 35667777
No 3
>KOG0078|consensus
Probab=100.00 E-value=2.4e-32 Score=191.20 Aligned_cols=136 Identities=42% Similarity=0.738 Sum_probs=127.4
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
++.|++ .+.+.+++..+.+|+|||+||++|+.+...|+++|+++++|||+++..||+.+..|+..+.++....+|+
T Consensus 41 ~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~ 120 (207)
T KOG0078|consen 41 FISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVK 120 (207)
T ss_pred ccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcE
Confidence 556666 6778889999999999999999999999999999999999999999999999999999999987778999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
++||||+|+...++++.+.+++++..+|+.++|+||++|.||+++|-.|++.+..+....
T Consensus 121 ~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 121 ILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLEDA 180 (207)
T ss_pred EEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcchh
Confidence 999999999999999999999999999999999999999999999999999999866654
No 4
>KOG0094|consensus
Probab=100.00 E-value=2.3e-32 Score=188.70 Aligned_cols=136 Identities=35% Similarity=0.544 Sum_probs=123.0
Q ss_pred cccccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC-C
Q psy2646 2 RLLLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACD-N 76 (168)
Q Consensus 2 ~~~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~ 76 (168)
++|.+|+| ++.+.+.+..+.||+|||+|||+|+.+.+.|++++.++|+|||+++.+||+.+.+|++.+...... .
T Consensus 49 ~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~ 128 (221)
T KOG0094|consen 49 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD 128 (221)
T ss_pred ccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc
Confidence 46888998 455667899999999999999999999999999999999999999999999999999999776655 4
Q ss_pred CcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 77 VNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 77 ~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
+-+++||||.||.+.+++..+++...+++++..|+++||+.|.|+.++|..+...+.....
T Consensus 129 viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 129 VIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred eEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 7889999999999999999999999999999999999999999999999997777665544
No 5
>KOG0098|consensus
Probab=99.98 E-value=1.2e-31 Score=183.82 Aligned_cols=131 Identities=39% Similarity=0.684 Sum_probs=124.1
Q ss_pred ceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 9 TLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 9 ~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
+.+.+++|+++++|++|||+|+++|++....||+++-|+|||||+++.++|..+..|+..+.++..++.-++++|||+||
T Consensus 44 g~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL 123 (216)
T KOG0098|consen 44 GARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDL 123 (216)
T ss_pred ceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhh
Confidence 36788999999999999999999999999999999999999999999999999999999998887788999999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
...+.|+.+++++|++++++.++++||+++.|++++|......+.++....
T Consensus 124 ~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~g 174 (216)
T KOG0098|consen 124 EARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQDG 174 (216)
T ss_pred hccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999876544
No 6
>KOG0088|consensus
Probab=99.97 E-value=1.1e-30 Score=174.85 Aligned_cols=128 Identities=34% Similarity=0.636 Sum_probs=120.0
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+.+.+++....+.||||+|+++|..+.+.||++++|+++|||++|.+||+.+..|..++.......+.+++||||+||.
T Consensus 52 ~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088|consen 52 NKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred hcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence 46677788899999999999999999999999999999999999999999999999999988777789999999999999
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
++++++.+++..+++..|..++++||+.+.||.++|+.+...+.+...
T Consensus 132 eeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s 179 (218)
T KOG0088|consen 132 EERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSS 179 (218)
T ss_pred HhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999988887653
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=1.7e-29 Score=179.80 Aligned_cols=127 Identities=35% Similarity=0.577 Sum_probs=116.4
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+.+.+++..+.++||||+|+++|..+++.+++++|++|+|||++++.+|+.+..|+..+... .++.|++|||||.|+.
T Consensus 45 ~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~-~~~~piilVGNK~DL~ 123 (189)
T cd04121 45 TTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEH-APGVPKILVGNRLHLA 123 (189)
T ss_pred EEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccch
Confidence 355677888999999999999999999999999999999999999999999999999999766 3689999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
..+.++.++++.+++.++++++++||++|.|++++|+++++.+..+..
T Consensus 124 ~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 124 FKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred hccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhcC
Confidence 777888899999999999999999999999999999999998876555
No 8
>KOG0087|consensus
Probab=99.97 E-value=4.8e-30 Score=179.24 Aligned_cols=130 Identities=45% Similarity=0.673 Sum_probs=122.1
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
++.+.++++.+..+||||+||++|+.+...||++|.|+++|||++...+|+.+..|+.++..+..+++++|+||||+||.
T Consensus 53 t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~ 132 (222)
T KOG0087|consen 53 TRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN 132 (222)
T ss_pred eeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh
Confidence 55667899999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
.-+.+..+++..+++..++.++++||.+..|++.+|..++..+.+...++
T Consensus 133 ~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 133 HLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVSKK 182 (222)
T ss_pred hccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999998888765544
No 9
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=3.3e-29 Score=179.94 Aligned_cols=135 Identities=39% Similarity=0.692 Sum_probs=119.2
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++ .+.+.++++.+.+++|||+|+++|..+|..|++++|++|+|||++++++|+.+..|+..+......+.|+
T Consensus 29 ~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~pi 108 (202)
T cd04120 29 CKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAEL 108 (202)
T ss_pred CCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcE
Confidence 456665 4567778889999999999999999999999999999999999999999999999999886665567999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhc-CCCEEEEeccCCCCHHHHHHHHHHHHHHHhcc
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHL-KIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~ 138 (168)
++||||+|+...+.+...++.++++.+ ++.++++||++|.|++++|+++++.+.++...
T Consensus 109 ilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~~~ 168 (202)
T cd04120 109 LLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPL 168 (202)
T ss_pred EEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhCcc
Confidence 999999999877788888888888775 78999999999999999999999988775443
No 10
>KOG0079|consensus
Probab=99.97 E-value=5.9e-30 Score=169.55 Aligned_cols=132 Identities=48% Similarity=0.799 Sum_probs=122.9
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
|+-|+| ++++.++|..+.++||||+|+++|+.+...|+++.+++++|||+++.+||..+..|++++..+ .+.+|-
T Consensus 37 YitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n-cdsv~~ 115 (198)
T KOG0079|consen 37 YITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN-CDSVPK 115 (198)
T ss_pred eEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhc-Cccccc
Confidence 555555 667778899999999999999999999999999999999999999999999999999999777 457999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
++||||.|+++.+.+..++++.++..+++.+||+||++..|++..|.-+.++..+.+
T Consensus 116 vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 116 VLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred eecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988776
No 11
>PTZ00099 rab6; Provisional
Probab=99.97 E-value=3.7e-29 Score=176.24 Aligned_cols=134 Identities=32% Similarity=0.493 Sum_probs=119.1
Q ss_pred ccccccce----eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc
Q psy2646 3 LLLPYQTL----QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78 (168)
Q Consensus 3 ~~~~t~~~----~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 78 (168)
.+.||++. +.+.++++.+.+.||||+|+++|..++..+++++|++|+|||++++++|+.+..|+..+........|
T Consensus 8 ~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~p 87 (176)
T PTZ00099 8 NYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVI 87 (176)
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe
Confidence 36788874 45677899999999999999999999999999999999999999999999999999998665445789
Q ss_pred EEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
+++||||+|+...+.+...++..++..+++.++++||++|.|++++|++++..+.+..
T Consensus 88 iilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 88 IALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred EEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999876678888888888888899999999999999999999999886644
No 12
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=5.7e-29 Score=180.69 Aligned_cols=160 Identities=24% Similarity=0.348 Sum_probs=129.9
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~ 83 (168)
+.||++..........+.+.||||+|+++|..++..+++++|++|+|||++++++|+.+..|+..+......+.|+++||
T Consensus 28 ~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVg 107 (220)
T cd04126 28 TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVG 107 (220)
T ss_pred CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 56788776666666778999999999999999999999999999999999999999999988888766545578999999
Q ss_pred ecCCCCC-------------------CcccCHHHHHHHHHhcC--------------CCEEEEeccCCCCHHHHHHHHHH
Q psy2646 84 NKNDQTS-------------------KKAVDYQVAKEYADHLK--------------IPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 84 nK~Dl~~-------------------~~~v~~~~~~~~~~~~~--------------~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
||+|+.+ .+.++.+++..+++..+ ++|+|+||++|.|++++|..+++
T Consensus 108 NK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~ 187 (220)
T cd04126 108 NKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFN 187 (220)
T ss_pred ECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHH
Confidence 9999975 56788899999998776 68999999999999999999998
Q ss_pred HHHHHhccCCCCCCchhhhhhccCCCCCCCCCCCCCCC
Q psy2646 131 EIKKRVTKDEKPSSESDAKKLNLNSGKPVDAPRSGGCC 168 (168)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 168 (168)
.+.........+.+++ ...-.+.+++ .++++||
T Consensus 188 ~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~ 220 (220)
T cd04126 188 LVLPLILAQRAEANRT----QGTVNLPNPK-RSKSKCC 220 (220)
T ss_pred HHHHHHHhhhhhhhhh----hccccCCCcc-cCCCCCC
Confidence 8876554443332222 1123344455 7788999
No 13
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=6.6e-29 Score=178.52 Aligned_cols=163 Identities=29% Similarity=0.475 Sum_probs=131.1
Q ss_pred cccccc----eeeeeeC-CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc----C
Q psy2646 4 LLPYQT----LQNKKEE-RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA----C 74 (168)
Q Consensus 4 ~~~t~~----~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~ 74 (168)
+.||++ .+.+.++ +..+.+.+|||||+++|..++..+++++|++|+|||++++++|+.+..|+..+.... .
T Consensus 29 ~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~ 108 (201)
T cd04107 29 YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNG 108 (201)
T ss_pred CCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCC
Confidence 567776 3455666 788999999999999999999999999999999999999999999999998885431 2
Q ss_pred CCCcEEEEEecCCCCCCcccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHHHHHHHhccCCCCCCchhhhhhcc
Q psy2646 75 DNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPSSESDAKKLNL 153 (168)
Q Consensus 75 ~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (168)
.+.|+++|+||+|+...+.+..+++.++++.++ .+++++||++|.|++++|+++++.+.+......++...++.+.. .
T Consensus 109 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~~~~~~~~~~~~~~~-~ 187 (201)
T cd04107 109 EPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDKNLQQAETPEDGSVI-D 187 (201)
T ss_pred CCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhchhhHhhcCCCccccc-c
Confidence 578999999999997656678888899999888 68999999999999999999999998775555555444433333 3
Q ss_pred CCCCCCCCCCCCCCC
Q psy2646 154 NSGKPVDAPRSGGCC 168 (168)
Q Consensus 154 ~~~~~~~~~~~~~c~ 168 (168)
..+++.. .++.+||
T Consensus 188 ~~~~~~~-~~~~~~~ 201 (201)
T cd04107 188 LKQTTTK-KKSKGCC 201 (201)
T ss_pred cccceec-cccCCCC
Confidence 3333333 5666899
No 14
>KOG0080|consensus
Probab=99.97 E-value=1.1e-29 Score=170.45 Aligned_cols=127 Identities=43% Similarity=0.721 Sum_probs=119.3
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl 88 (168)
++.+.++++.+++.||||+|+++|+.+.+.||++|.|+|+|||++.+++|..+..|+.++..++ +++.-.|+||||+|.
T Consensus 50 vk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk 129 (209)
T KOG0080|consen 50 VKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK 129 (209)
T ss_pred EEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc
Confidence 6788999999999999999999999999999999999999999999999999999999997776 556777999999998
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
.+++.++.+++..|++.+++-|+|+||++.+|+...|+.++.++.+-.
T Consensus 130 es~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 130 ESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred hhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence 888999999999999999999999999999999999999999888643
No 15
>KOG0093|consensus
Probab=99.97 E-value=8.9e-30 Score=168.50 Aligned_cols=136 Identities=39% Similarity=0.707 Sum_probs=124.1
Q ss_pred ccccccee----eeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTLQ----NKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~~----~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.+|+|++ ++.-..+.+.+|+|||+|+++|+.+...|+++++|+|+|||++|.+||..+..|...|..++..+.|+
T Consensus 50 fvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqv 129 (193)
T KOG0093|consen 50 FVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQV 129 (193)
T ss_pred eeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceE
Confidence 45666643 33345678999999999999999999999999999999999999999999999999998888889999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
|+++||+|+..++.++.+.++.++.++|..+||+||+.+.|++++|+.++..+.+++..+
T Consensus 130 ilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 130 ILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMSES 189 (193)
T ss_pred EEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999999887654
No 16
>KOG0394|consensus
Probab=99.97 E-value=7.5e-29 Score=169.76 Aligned_cols=129 Identities=32% Similarity=0.567 Sum_probs=117.8
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEec
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA----CDNVNKLLVGNK 85 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piivv~nK 85 (168)
.|.+.+|++-+.++||||+|+++|.++.-.+|+++|.++++||++++.||+.+..|..++.... ....|+||+|||
T Consensus 48 tKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNK 127 (210)
T KOG0394|consen 48 TKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNK 127 (210)
T ss_pred eeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEccc
Confidence 6888999999999999999999999999999999999999999999999999999999985543 246999999999
Q ss_pred CCCCC--CcccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHHHHHHHhcc
Q psy2646 86 NDQTS--KKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATEIKKRVTK 138 (168)
Q Consensus 86 ~Dl~~--~~~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~ 138 (168)
+|+.+ .++++...++.+|...+ +||||+||+...|+.++|..+.+.++.....
T Consensus 128 iD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 128 IDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred ccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccch
Confidence 99976 37899999999998775 9999999999999999999999999877654
No 17
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=2.2e-28 Score=178.71 Aligned_cols=164 Identities=19% Similarity=0.341 Sum_probs=129.8
Q ss_pred ccccccce---eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCc
Q psy2646 3 LLLPYQTL---QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVN 78 (168)
Q Consensus 3 ~~~~t~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p 78 (168)
.+.||++. +.+.+++..+.++||||+|+++|..+++.|++++|++|+|||++++++|+.+ ..|+..+.... ++.|
T Consensus 41 ~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~p 119 (232)
T cd04174 41 TYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTR 119 (232)
T ss_pred CcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCC
Confidence 35677653 3356789999999999999999999999999999999999999999999984 79999997663 5789
Q ss_pred EEEEEecCCCCC------------CcccCHHHHHHHHHhcCC-CEEEEeccCCC-CHHHHHHHHHHHHHHHhccCCCC--
Q psy2646 79 KLLVGNKNDQTS------------KKAVDYQVAKEYADHLKI-PFLETSAKNGA-NVEQAFLTMATEIKKRVTKDEKP-- 142 (168)
Q Consensus 79 iivv~nK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~-~i~~i~~~l~~~~~~~~~~~~~~-- 142 (168)
+++||||+|+.. .+.++.+++.++++.+++ .|++|||++|. |++++|..++..+.++..+....
T Consensus 120 iilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~~~~~~~~ 199 (232)
T cd04174 120 ILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLSPPIKKSP 199 (232)
T ss_pred EEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhccccccccc
Confidence 999999999864 256888999999999998 69999999998 89999999999888764333222
Q ss_pred -----CCchhhhhhccCCCCCCCCCCCCCC
Q psy2646 143 -----SSESDAKKLNLNSGKPVDAPRSGGC 167 (168)
Q Consensus 143 -----~~~~~~~~~~~~~~~~~~~~~~~~c 167 (168)
+...+-+.....+.-..++.++++|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (232)
T cd04174 200 VRSLSKRLLHLPSRSELISSTFKKEKAKSC 229 (232)
T ss_pred ccccccccccCCCcccccccccccccCCcc
Confidence 1122223334444445566777777
No 18
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=4.5e-28 Score=172.77 Aligned_cols=136 Identities=28% Similarity=0.472 Sum_probs=117.8
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc---CCCC
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA---CDNV 77 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~ 77 (168)
+.||++ .+...+++..+.++||||||+++|..++..+++++|++|+|||+++.++|+.+..|+..+.... ..+.
T Consensus 28 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 107 (190)
T cd04144 28 YDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADV 107 (190)
T ss_pred CCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 456655 3456678888999999999999999999999999999999999999999999999999886543 2478
Q ss_pred cEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 78 piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
|+++||||+|+...+.+...++..+++.++++++++||++|.|++++|+++++.+..+...+
T Consensus 108 piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~~ 169 (190)
T cd04144 108 PIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGG 169 (190)
T ss_pred CEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhccc
Confidence 99999999999877777777888888888999999999999999999999999887665554
No 19
>KOG0091|consensus
Probab=99.96 E-value=1.1e-28 Score=166.02 Aligned_cols=134 Identities=40% Similarity=0.615 Sum_probs=118.8
Q ss_pred ccccceeee----ee-CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCC-
Q psy2646 5 LPYQTLQNK----KE-ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC-DNV- 77 (168)
Q Consensus 5 ~~t~~~~~~----~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~- 77 (168)
-||++..+. .+ +|..+++++|||+||++|+++...||+++-|++++||++|..||+.+..|+.+...+.. +..
T Consensus 38 dptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~ 117 (213)
T KOG0091|consen 38 DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKV 117 (213)
T ss_pred CCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCee
Confidence 366664433 23 58889999999999999999999999999999999999999999999999999866542 444
Q ss_pred cEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhcc
Q psy2646 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138 (168)
Q Consensus 78 piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~ 138 (168)
-+.+||+|.||...++++.++++.+++.+++.|+|+||++|.|+++.|.-+.+.+..+..+
T Consensus 118 VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 118 VFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred EEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhc
Confidence 4478999999999999999999999999999999999999999999999999999987766
No 20
>PLN03110 Rab GTPase; Provisional
Probab=99.96 E-value=1.8e-27 Score=172.84 Aligned_cols=135 Identities=39% Similarity=0.603 Sum_probs=119.2
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++ .+.+.+++..+.++||||+|+++|..++..++++++++|+|||++++.+|+.+..|+..+......+.|+
T Consensus 41 ~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pi 120 (216)
T PLN03110 41 SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVI 120 (216)
T ss_pred CCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeE
Confidence 456665 4556778888999999999999999999999999999999999999999999999999987765557999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhcc
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~ 138 (168)
++++||+|+...+.+..+++..++..++++++++||+++.|++++|++++..+.+....
T Consensus 121 iiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~~~ 179 (216)
T PLN03110 121 MMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISK 179 (216)
T ss_pred EEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999987777888888888888899999999999999999999999998875443
No 21
>KOG0083|consensus
Probab=99.96 E-value=9.6e-29 Score=161.37 Aligned_cols=135 Identities=39% Similarity=0.690 Sum_probs=123.4
Q ss_pred cccccce----eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTL----QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~----~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+++|+++ +.+.++++++.+|+|||+||++|++....||+.+|+++++||+.+.-||+....|+.+|.++....+.+
T Consensus 27 fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l 106 (192)
T KOG0083|consen 27 FISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVAL 106 (192)
T ss_pred eeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhH
Confidence 5677774 456778999999999999999999999999999999999999999999999999999998886667899
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhcc
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~ 138 (168)
+++|||+|+..++.+..+++..+++.+++|+.++||++|.|++-.|-.+...+.+.+-.
T Consensus 107 ~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~~~ 165 (192)
T KOG0083|consen 107 MLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLKMG 165 (192)
T ss_pred hhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhccC
Confidence 99999999988888999999999999999999999999999999999999888776543
No 22
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.96 E-value=2.7e-27 Score=169.90 Aligned_cols=160 Identities=41% Similarity=0.688 Sum_probs=127.7
Q ss_pred cccccce----eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTL----QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~----~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++. ..+.+++..+.+.|||+||++.|..++..++++++++++|||++++++|+.+..|+..+... ....|+
T Consensus 35 ~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~-~~~~pi 113 (199)
T cd04110 35 YITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQN-CDDVCK 113 (199)
T ss_pred cCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCE
Confidence 5677663 44556788889999999999999999999999999999999999999999999999998665 357899
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccCCCCCC
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPSSESDAKKLNLNSGKPV 159 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (168)
++||||+|+...+.+...++..++..++++++++||++|.|++++|+++...+........+...+ ......+-..
T Consensus 114 ivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 189 (199)
T cd04110 114 VLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQ----QQQNDVVKLP 189 (199)
T ss_pred EEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhccCccccc----CCccccCccc
Confidence 999999999877677778888888888899999999999999999999999988664444322111 1112222223
Q ss_pred CC-CCCCCCC
Q psy2646 160 DA-PRSGGCC 168 (168)
Q Consensus 160 ~~-~~~~~c~ 168 (168)
|+ +++++||
T Consensus 190 ~~~~~~~~~~ 199 (199)
T cd04110 190 KNSKRKKRCC 199 (199)
T ss_pred hhccccccCC
Confidence 33 6788899
No 23
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=4.9e-27 Score=167.53 Aligned_cols=158 Identities=36% Similarity=0.664 Sum_probs=129.6
Q ss_pred cccccce----eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTL----QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~----~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||.+. +.+.+++..+.+.||||||++++..++..+++++|++|+|||++++++|+.+..|+..+......+.|+
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pi 109 (191)
T cd04112 30 FIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVI 109 (191)
T ss_pred cCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcE
Confidence 4555543 346678888999999999999999999999999999999999999999999999999987765557899
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccCCCCCC
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPSSESDAKKLNLNSGKPV 159 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (168)
++++||+|+...+.+...++..+++.++++++++||++|.|++++|.++.+.+...... .++...- ..++=+.
T Consensus 110 iiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~--~~~~~~~-----~~~~~~~ 182 (191)
T cd04112 110 MLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYE--QPDEGKF-----KISDYVT 182 (191)
T ss_pred EEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc--cCCCCcE-----EeccccC
Confidence 99999999976667777788888888899999999999999999999999998766432 2211111 1444556
Q ss_pred CCCCCCCCC
Q psy2646 160 DAPRSGGCC 168 (168)
Q Consensus 160 ~~~~~~~c~ 168 (168)
+..+.++||
T Consensus 183 ~~~~~~~~~ 191 (191)
T cd04112 183 KQKKISRCC 191 (191)
T ss_pred cccccCCCC
Confidence 668889999
No 24
>KOG0095|consensus
Probab=99.96 E-value=2.3e-28 Score=162.40 Aligned_cols=126 Identities=44% Similarity=0.760 Sum_probs=117.0
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
++++.++++++++++|||+|+++|+++...||+.|+++|++||++..++|+.+.+|+.++..+...++--|+||||.|+.
T Consensus 46 iktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~ 125 (213)
T KOG0095|consen 46 IKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA 125 (213)
T ss_pred EEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchh
Confidence 78889999999999999999999999999999999999999999999999999999999988766677789999999999
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+.++++...+++|.+....-++++||++..|++.+|..+.-.+...
T Consensus 126 drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 126 DRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISE 171 (213)
T ss_pred hhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Confidence 9889999999999988888899999999999999999988766643
No 25
>KOG0086|consensus
Probab=99.95 E-value=1.4e-27 Score=159.23 Aligned_cols=136 Identities=40% Similarity=0.630 Sum_probs=125.6
Q ss_pred ccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q psy2646 5 LPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGN 84 (168)
Q Consensus 5 ~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~n 84 (168)
--..+++.+.+.++.++++||||+||++|++..+.||++|.|.++|||+++.++|+.+..|+..+.....+.+-++++||
T Consensus 43 GveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~Gn 122 (214)
T KOG0086|consen 43 GVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGN 122 (214)
T ss_pred eeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCC
Confidence 34456888999999999999999999999999999999999999999999999999999999999777667788899999
Q ss_pred cCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCC
Q psy2646 85 KNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDE 140 (168)
Q Consensus 85 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~ 140 (168)
|.||.+.++++..++..|+.+..+.++++||.+|+|+++.|-...+.+..+....+
T Consensus 123 KkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GE 178 (214)
T KOG0086|consen 123 KKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIESGE 178 (214)
T ss_pred hhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999888899999999999999999999999998876553
No 26
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.95 E-value=4.7e-27 Score=167.66 Aligned_cols=131 Identities=24% Similarity=0.443 Sum_probs=112.7
Q ss_pred cccccccee---eeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCc
Q psy2646 3 LLLPYQTLQ---NKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVN 78 (168)
Q Consensus 3 ~~~~t~~~~---~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p 78 (168)
.+.||++.. .+.++++.+.+++|||+|+++|..+++.|++++|++|+|||++++++|+.+. .|+..+... .++.|
T Consensus 31 ~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~-~~~~p 109 (191)
T cd01875 31 EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH-CPNVP 109 (191)
T ss_pred CCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCC
Confidence 467787643 3467899999999999999999999999999999999999999999999996 588877655 35799
Q ss_pred EEEEEecCCCCCCc------------ccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 79 KLLVGNKNDQTSKK------------AVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 79 iivv~nK~Dl~~~~------------~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+++||||.|+.+.. .+..+++..+++.++ ++++++||++|.|++++|.++++.+..
T Consensus 110 iilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 110 ILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred EEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 99999999996532 366778888998888 689999999999999999999988754
No 27
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.95 E-value=2.8e-27 Score=167.53 Aligned_cols=130 Identities=23% Similarity=0.452 Sum_probs=114.3
Q ss_pred ccccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCc
Q psy2646 3 LLLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVN 78 (168)
Q Consensus 3 ~~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p 78 (168)
.+.||++ .+.+.+++..+.+++|||+|+++|..+++.+++++|++|+|||++++.+|+.+ ..|+..+.... ++.|
T Consensus 33 ~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~p 111 (182)
T cd04172 33 NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTK 111 (182)
T ss_pred ccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCC
Confidence 3567765 34567789999999999999999999999999999999999999999999997 79999997763 5799
Q ss_pred EEEEEecCCCCC------------CcccCHHHHHHHHHhcCC-CEEEEeccCCCC-HHHHHHHHHHHHH
Q psy2646 79 KLLVGNKNDQTS------------KKAVDYQVAKEYADHLKI-PFLETSAKNGAN-VEQAFLTMATEIK 133 (168)
Q Consensus 79 iivv~nK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~-i~~i~~~l~~~~~ 133 (168)
+++||||+|+.. .+.++.+++.++++.+++ +|+|+||++|.| ++++|..+++.+.
T Consensus 112 iilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 112 MLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred EEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 999999999864 245888999999999995 899999999998 9999999998654
No 28
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.95 E-value=4.7e-27 Score=165.54 Aligned_cols=128 Identities=27% Similarity=0.486 Sum_probs=112.6
Q ss_pred cccccce---eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTL---QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~pi 79 (168)
+.||++. +.+.+++..+.++||||+|+++|..++..+++++|++|+|||+++++||+.+ ..|+..+.... .+.|+
T Consensus 30 ~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~~~pi 108 (176)
T cd04133 30 YIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-PNVPI 108 (176)
T ss_pred CCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-CCCCE
Confidence 5677653 4456788999999999999999999999999999999999999999999998 68999987663 57999
Q ss_pred EEEEecCCCCCCc----------ccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKK----------AVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 80 ivv~nK~Dl~~~~----------~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
++||||+|+.+.+ .++.+++..+++.+++ +++|+||++|.|++++|+.+++.+
T Consensus 109 ilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 109 VLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred EEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 9999999996542 4788899999999987 599999999999999999999875
No 29
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=1.9e-26 Score=164.04 Aligned_cols=136 Identities=49% Similarity=0.793 Sum_probs=119.4
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++ .+.+.+++..+.+++|||+|+++|..++..+++++|++|+|||++++++|..+..|+..+........|+
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ 108 (188)
T cd04125 29 TKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIK 108 (188)
T ss_pred CCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 456665 4556778888999999999999999999999999999999999999999999999999987765556899
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
++++||.|+.+.+.++..++..++...+++++++||+++.|++++|+++.+.+.++....
T Consensus 109 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~ 168 (188)
T cd04125 109 VIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQ 168 (188)
T ss_pred EEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 999999999877777878888888888899999999999999999999999998765444
No 30
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.95 E-value=1.3e-26 Score=168.28 Aligned_cols=132 Identities=25% Similarity=0.377 Sum_probs=115.0
Q ss_pred cccccce----eeeeeCC-eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---C
Q psy2646 4 LLPYQTL----QNKKEER-TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC---D 75 (168)
Q Consensus 4 ~~~t~~~----~~~~~~~-~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~ 75 (168)
+.||++. +.+.+++ ..+.++||||+|++.+..++..+++++|++|+|||++++++|+.+..|+..+..... .
T Consensus 29 ~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~ 108 (215)
T cd04109 29 YKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSET 108 (215)
T ss_pred CCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCC
Confidence 5677763 4455554 578999999999999999999999999999999999999999999999999876532 3
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+.|+++|+||+|+...+.+..+++..+++.++++++++||++|.|++++|++++..+...
T Consensus 109 ~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 109 QPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred CceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 568999999999987777888888899998899999999999999999999999988764
No 31
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.95 E-value=1.1e-26 Score=163.17 Aligned_cols=132 Identities=30% Similarity=0.494 Sum_probs=116.7
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcE
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 79 (168)
+.||++ .+.+.+++..+.++||||||+++|..++..+++++|++|+|||++++.+|+.+..|...+.+.. ..+.|+
T Consensus 31 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~pi 110 (172)
T cd04141 31 HDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPL 110 (172)
T ss_pred cCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCE
Confidence 455654 3456778999999999999999999999999999999999999999999999999988886643 357999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
++|+||+|+...+.++.+++..+++.++++++++||++|.|++++|+++++.+..+
T Consensus 111 ilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 111 VLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred EEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 99999999987777888899999998999999999999999999999999887763
No 32
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.95 E-value=2e-26 Score=160.75 Aligned_cols=125 Identities=44% Similarity=0.723 Sum_probs=113.1
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+.+.+++..+.+.+|||||+++|..++..+++++|++|+|||++++++|+.+..|+..+.....++.|+++|+||+|+.
T Consensus 41 ~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 41 TRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred EEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 34566788899999999999999999999999999999999999999999999999998866655678999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+.+.++.+++..+++..+++++++||++|.|++++|.+++..+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 121 AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred cccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 877788888889998889999999999999999999999987754
No 33
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=1.5e-26 Score=163.35 Aligned_cols=130 Identities=24% Similarity=0.435 Sum_probs=113.3
Q ss_pred ccccccce---eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCc
Q psy2646 3 LLLPYQTL---QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVN 78 (168)
Q Consensus 3 ~~~~t~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p 78 (168)
.+.||++. +.+.++++.+.+++|||+|+++|..+++.+++++|++|+|||+++++||+.+ ..|+..+.... ++.|
T Consensus 29 ~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~-~~~~ 107 (178)
T cd04131 29 TYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC-PNTK 107 (178)
T ss_pred CcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC-CCCC
Confidence 35677653 4467789999999999999999999999999999999999999999999996 78999987763 5799
Q ss_pred EEEEEecCCCCC------------CcccCHHHHHHHHHhcCC-CEEEEeccCCCC-HHHHHHHHHHHHH
Q psy2646 79 KLLVGNKNDQTS------------KKAVDYQVAKEYADHLKI-PFLETSAKNGAN-VEQAFLTMATEIK 133 (168)
Q Consensus 79 iivv~nK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~-i~~i~~~l~~~~~ 133 (168)
+++||||.||.+ .+.++.+++.++++.+++ +|+++||++|.| ++++|..+++...
T Consensus 108 iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 108 VLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred EEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 999999999964 245888999999999996 799999999995 9999999998644
No 34
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.95 E-value=2.9e-26 Score=166.66 Aligned_cols=136 Identities=20% Similarity=0.409 Sum_probs=114.0
Q ss_pred ccccccce---eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCc
Q psy2646 3 LLLPYQTL---QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVN 78 (168)
Q Consensus 3 ~~~~t~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p 78 (168)
.+.||++. ..+.+++..+.|.||||+|+++|..+++.+++++|++|+|||++++++|+.+ ..|...+... .++.|
T Consensus 29 ~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~-~~~~p 107 (222)
T cd04173 29 SYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF-CPNAK 107 (222)
T ss_pred ccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCC
Confidence 36777763 3457789999999999999999999999999999999999999999999998 4677666544 46799
Q ss_pred EEEEEecCCCCCC------------cccCHHHHHHHHHhcCC-CEEEEeccCCCC-HHHHHHHHHHHHHHHhccC
Q psy2646 79 KLLVGNKNDQTSK------------KAVDYQVAKEYADHLKI-PFLETSAKNGAN-VEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 79 iivv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~-i~~i~~~l~~~~~~~~~~~ 139 (168)
+++||||+|+... ..++.+++..+++..++ +|+||||+++.+ ++++|..++.....+....
T Consensus 108 iiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~~~ 182 (222)
T cd04173 108 VVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGHRQ 182 (222)
T ss_pred EEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccCCc
Confidence 9999999998542 13677889999999985 899999999985 9999999999887755433
No 35
>KOG0081|consensus
Probab=99.95 E-value=6.2e-27 Score=157.02 Aligned_cols=122 Identities=37% Similarity=0.714 Sum_probs=113.2
Q ss_pred CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccC
Q psy2646 17 RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQTSKKAVD 95 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~v~ 95 (168)
+..+.+++|||+|+++|+++...|+++|-+++++||+++..||..+++|+.++..+. ..+..|+++|||+||...++++
T Consensus 64 ~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs 143 (219)
T KOG0081|consen 64 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVS 143 (219)
T ss_pred ceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhh
Confidence 456899999999999999999999999999999999999999999999999996664 5678899999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhcc
Q psy2646 96 YQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138 (168)
Q Consensus 96 ~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~ 138 (168)
..++.+++..+++|||++||-+|.|+++..+-+.+.+.++...
T Consensus 144 ~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 144 EDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred HHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888887654
No 36
>PTZ00369 Ras-like protein; Provisional
Probab=99.95 E-value=3.1e-26 Score=163.14 Aligned_cols=134 Identities=35% Similarity=0.525 Sum_probs=116.6
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcE
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 79 (168)
+.||.+ .+.+.+++..+.+++|||||+++|..++..+++++|++++|||++++++|+.+..|+..+.... ..+.|+
T Consensus 34 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~pi 113 (189)
T PTZ00369 34 YDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPM 113 (189)
T ss_pred cCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 456654 3555788999999999999999999999999999999999999999999999999999886653 347899
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
++++||+|+.+.+.+...++..+++.++++++++||++|.|++++|.++++.+.+..+
T Consensus 114 iiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 114 ILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLK 171 (189)
T ss_pred EEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999997766677777888888888999999999999999999999998876544
No 37
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=1.1e-25 Score=162.98 Aligned_cols=136 Identities=38% Similarity=0.617 Sum_probs=116.6
Q ss_pred ccccccee----eeee-CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCC
Q psy2646 4 LLPYQTLQ----NKKE-ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNV 77 (168)
Q Consensus 4 ~~~t~~~~----~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~ 77 (168)
+.||++.. .+.+ ++..+.+++|||+|+++|..++..+++++|++|+|||++++++|+.+..|+..+.... ....
T Consensus 31 ~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~ 110 (211)
T cd04111 31 SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRP 110 (211)
T ss_pred CCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45666533 3444 4667899999999999999999999999999999999999999999999999986654 3357
Q ss_pred cEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 78 piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
|+++++||.|+...+.+..+++..+++.++++++++||++|.|++++|+++++.+.++....
T Consensus 111 ~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~ 172 (211)
T cd04111 111 VFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRG 172 (211)
T ss_pred eEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 88999999999877778888888999999999999999999999999999999888775443
No 38
>PLN03108 Rab family protein; Provisional
Probab=99.94 E-value=3e-25 Score=160.57 Aligned_cols=128 Identities=42% Similarity=0.699 Sum_probs=115.5
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
...+.+++..+.+.+|||+|+++|..++..+++++|++|+|||++++++|..+..|+..+........|+++++||+|+.
T Consensus 45 ~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 45 ARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred EEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 44567888889999999999999999999999999999999999999999999999988866545679999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
..+.+..+++.++++.++++++++||+++.|++++|.++++.+.++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 125 HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 777788888999999999999999999999999999999999987654
No 39
>KOG0097|consensus
Probab=99.94 E-value=9.2e-26 Score=148.90 Aligned_cols=136 Identities=41% Similarity=0.654 Sum_probs=126.1
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~ 83 (168)
.-...+.+.+.+.+.++++++|||+|+++|+...+.|++++.+.+.|||++.+.++..+..|+........++.-++++|
T Consensus 44 igvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lig 123 (215)
T KOG0097|consen 44 IGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIG 123 (215)
T ss_pred cceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEec
Confidence 34456688999999999999999999999999999999999999999999999999999999999877777889999999
Q ss_pred ecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 84 nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
||.|+..++.++.+++.+|+++.|+.++++||++|.|+++.|-....++.+.....
T Consensus 124 nkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~akkiyqniqdg 179 (215)
T KOG0097|consen 124 NKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQNIQDG 179 (215)
T ss_pred chhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999998876654
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.94 E-value=2.2e-25 Score=154.61 Aligned_cols=129 Identities=32% Similarity=0.509 Sum_probs=112.3
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcE
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 79 (168)
+.||.+ .+.+.+++..+.++||||||+++|..++..+++++|++++|||++++++|+.+..|+..+.... ..+.|+
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 109 (163)
T cd04136 30 YDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPM 109 (163)
T ss_pred cCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 445543 5567778888999999999999999999999999999999999999999999999999886653 357999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
++++||+|+.+.+.+...++..+++.++.+++++||+++.|+.++|+++++.+
T Consensus 110 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 110 VLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred EEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 99999999977666777777788888889999999999999999999998754
No 41
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=3.2e-25 Score=157.93 Aligned_cols=129 Identities=26% Similarity=0.439 Sum_probs=108.8
Q ss_pred cccccce---eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTL---QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~pi 79 (168)
+.||++. +.+.+++..+.+.||||+|+++|..++..+++++|++|+|||++++++|+.+. .|+..+... .++.|+
T Consensus 29 ~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~-~~~~pi 107 (189)
T cd04134 29 YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREH-CPGVKL 107 (189)
T ss_pred cCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCE
Confidence 4566643 34556888899999999999999999999999999999999999999999886 588888665 357999
Q ss_pred EEEEecCCCCCCc------------ccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKK------------AVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 80 ivv~nK~Dl~~~~------------~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
++||||+|+...+ .+..+++..++...+ ++++++||++|.|++++|.++++.+.
T Consensus 108 ilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 108 VLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred EEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 9999999996543 245566777877776 78999999999999999999998886
No 42
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.94 E-value=7.5e-25 Score=156.31 Aligned_cols=135 Identities=31% Similarity=0.567 Sum_probs=114.7
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++ .+.+.+++..+.+.+|||+|++++..++..+++++|++++|||++++++|+.+..|+..+... ..+.|+
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~pi 108 (193)
T cd04118 30 YQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-EEHCKI 108 (193)
T ss_pred cccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 456665 456777899999999999999999999999999999999999999999999999999988665 347899
Q ss_pred EEEEecCCCCCC----cccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 80 LLVGNKNDQTSK----KAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 80 ivv~nK~Dl~~~----~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
++|+||+|+... +.+...++..++..++++++++||+++.|++++|+++.+.+.++...+
T Consensus 109 ilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~ 172 (193)
T cd04118 109 YLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQ 172 (193)
T ss_pred EEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcccc
Confidence 999999998532 345556677788888899999999999999999999999998765443
No 43
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.94 E-value=2.3e-25 Score=154.95 Aligned_cols=130 Identities=32% Similarity=0.495 Sum_probs=113.6
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcE
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 79 (168)
+.||.+ .+.+.+++..+.+++|||||+++|..++..+++++|++++|||++++.+|+.+..|+..+.... ..+.|+
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 109 (164)
T cd04175 30 YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPM 109 (164)
T ss_pred cCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 445554 3567778889999999999999999999999999999999999999999999999999986543 457999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
++++||+|+...+.+...++..+++.++++++++||++|.|++++|.++...+.
T Consensus 110 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 110 ILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred EEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 999999999877677777777888888899999999999999999999987653
No 44
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.94 E-value=2.4e-25 Score=154.73 Aligned_cols=128 Identities=34% Similarity=0.658 Sum_probs=114.1
Q ss_pred cccccce----eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTL----QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~----~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++. +.+.+++..+.+++||++|+++|..++..+++++|++++|||++++++|+.+..|+..+......+.|+
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~i 108 (161)
T cd04117 29 HISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQK 108 (161)
T ss_pred CCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 4667663 456677888999999999999999999999999999999999999999999999999987664457999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
++||||.|+...+.+..+++..+++.++++++++||++|.|++++|.+|++.
T Consensus 109 ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 109 ILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999998777788888999998889999999999999999999999864
No 45
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.94 E-value=2.4e-25 Score=156.81 Aligned_cols=129 Identities=22% Similarity=0.358 Sum_probs=110.1
Q ss_pred ccccccce---eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCc
Q psy2646 3 LLLPYQTL---QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVN 78 (168)
Q Consensus 3 ~~~~t~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p 78 (168)
.+.||++. +.+.+++..+.++||||+|+++|..++..+++++|++|+|||++++++|+.+. .|+..+... .++.|
T Consensus 29 ~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~-~~~~p 107 (175)
T cd01874 29 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTP 107 (175)
T ss_pred CCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCC
Confidence 46678764 24466788899999999999999999999999999999999999999999996 588888655 35799
Q ss_pred EEEEEecCCCCCC------------cccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 79 KLLVGNKNDQTSK------------KAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 79 iivv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+++||||+|+... +.+..+++.++++..+ +.++++||++|.|++++|+.++..+
T Consensus 108 iilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 108 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred EEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 9999999998643 4567788888888877 7899999999999999999998754
No 46
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.94 E-value=3.6e-25 Score=154.25 Aligned_cols=131 Identities=68% Similarity=1.025 Sum_probs=115.3
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||.+ .+.+.+++..+.+++||+||+++|..++..+++++|++|+|||++++++|..+..|+..+......+.|+
T Consensus 31 ~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~ 110 (166)
T cd01869 31 YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNK 110 (166)
T ss_pred CCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcE
Confidence 345554 3456667888999999999999999999999999999999999999999999999999987764457899
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
++++||+|+...+.+..+++..+++.++++++++||++|.|++++|.++.+.+.+
T Consensus 111 iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 111 LLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred EEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 9999999998777788888888998889999999999999999999999988753
No 47
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.94 E-value=4e-25 Score=154.35 Aligned_cols=131 Identities=47% Similarity=0.797 Sum_probs=115.3
Q ss_pred cccccce----eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTL----QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~----~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||.+. +.+.+++..+.+++|||||++++..++..+++++|++|+|||++++++|..+..|+..+......+.|+
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ 111 (167)
T cd01867 32 FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVER 111 (167)
T ss_pred cccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcE
Confidence 4556553 445668888999999999999999999999999999999999999999999999999997765567999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+++|||+|+.+.+.+..+++..+++.++++++++||+++.|++++|+++.+.+..
T Consensus 112 iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 112 MLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred EEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999998766777788888888889999999999999999999999998764
No 48
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.94 E-value=4.4e-25 Score=153.83 Aligned_cols=132 Identities=39% Similarity=0.685 Sum_probs=114.8
Q ss_pred ccccccce----eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc
Q psy2646 3 LLLPYQTL----QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78 (168)
Q Consensus 3 ~~~~t~~~----~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 78 (168)
.+.||++. +.+..+++.+.+++|||+|+++|..++..+++++|++++|||++++++++.+..|+..+........|
T Consensus 29 ~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 108 (165)
T cd01865 29 AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ 108 (165)
T ss_pred CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence 35677663 34455777899999999999999999999999999999999999999999999999998766545789
Q ss_pred EEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+++++||+|+.+.+.+..+++.++++.++++++++||+++.|++++|++++..+.+
T Consensus 109 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 109 VILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred EEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999998776677778888888888999999999999999999999987654
No 49
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.94 E-value=3.2e-25 Score=159.08 Aligned_cols=129 Identities=26% Similarity=0.495 Sum_probs=111.2
Q ss_pred cccccce----eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTL----QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~----~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++. +.+.++++.+.+.||||+|+++|..++..|++++|++|+|||++++.+|+.+..|+..+.+. ..++|+
T Consensus 24 ~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~-~~~~pi 102 (200)
T smart00176 24 YVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV-CENIPI 102 (200)
T ss_pred CCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHh-CCCCCE
Confidence 5677764 34556788999999999999999999999999999999999999999999999999999776 357999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
++||||+|+.. +.+..+. ..+++..+++++++||++|.|+.++|.+++..+.+.
T Consensus 103 ilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 103 VLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred EEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999864 3444443 467777889999999999999999999999988764
No 50
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.94 E-value=4.6e-25 Score=155.60 Aligned_cols=119 Identities=39% Similarity=0.745 Sum_probs=107.7
Q ss_pred CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCcccC
Q psy2646 17 RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQTSKKAVD 95 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~v~ 95 (168)
+..+.+.||||||+++|..++..+++++|++|+|||++++++|..+..|+..+.... ..+.|+++|+||+|+.+.+.+.
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~ 139 (180)
T cd04127 60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVS 139 (180)
T ss_pred CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccC
Confidence 456899999999999999999999999999999999999999999999999986653 3478999999999998777788
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 96 YQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 96 ~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
.+++..+++.++++++++||++|.|++++|+++.+.+.++
T Consensus 140 ~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 140 EEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 7888899999999999999999999999999999887654
No 51
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=2.9e-25 Score=158.79 Aligned_cols=115 Identities=22% Similarity=0.367 Sum_probs=101.4
Q ss_pred eeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCC--
Q psy2646 14 KEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLVGNKNDQTS-- 90 (168)
Q Consensus 14 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~-- 90 (168)
.+++..+.++||||+|+++ .+...+++++|++|+|||++++.||+.+. .|+..+.... ++.|+++||||+|+..
T Consensus 60 ~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~ 136 (195)
T cd01873 60 VVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYAD 136 (195)
T ss_pred eeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccc
Confidence 5788999999999999975 34567899999999999999999999996 5988886653 5789999999999863
Q ss_pred -----------------CcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 91 -----------------KKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 91 -----------------~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
.+.++.+++..+++.++++|+||||++|.|++++|+.++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 137 LDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 36788899999999999999999999999999999999864
No 52
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=7.9e-25 Score=155.40 Aligned_cols=134 Identities=27% Similarity=0.457 Sum_probs=111.2
Q ss_pred ccccccee---eeeeC-CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCc
Q psy2646 4 LLPYQTLQ---NKKEE-RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVN 78 (168)
Q Consensus 4 ~~~t~~~~---~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p 78 (168)
+.||++.. .+..+ +..+.+++|||||+++|..++..+++++|++|+|||++++++|+.+. .|+..+... .++.|
T Consensus 29 ~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p 107 (187)
T cd04132 29 YVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CPGTP 107 (187)
T ss_pred CCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCC
Confidence 45665533 33444 67789999999999999999999999999999999999999999986 588777554 35789
Q ss_pred EEEEEecCCCCCC----cccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHHHHhcc
Q psy2646 79 KLLVGNKNDQTSK----KAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIKKRVTK 138 (168)
Q Consensus 79 iivv~nK~Dl~~~----~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~ 138 (168)
+++++||.|+... +.+...++.+++..+++ +++++||++|.|+.++|..+++.+......
T Consensus 108 iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 172 (187)
T cd04132 108 IMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGK 172 (187)
T ss_pred EEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 9999999998643 24667788888888887 899999999999999999999998865443
No 53
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.93 E-value=5.3e-25 Score=155.98 Aligned_cols=130 Identities=22% Similarity=0.390 Sum_probs=109.7
Q ss_pred cccccce----eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTL----QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~----~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++. +.+.+++..+.+++|||+|+++|..++..+++++|++++|||++++++|+.+..|+..+........|
T Consensus 29 ~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p- 107 (182)
T cd04128 29 YIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP- 107 (182)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-
Confidence 6788764 45677888999999999999999999999999999999999999999999999999998765444566
Q ss_pred EEEEecCCCCC-----CcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTS-----KKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 80 ivv~nK~Dl~~-----~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
++||||+|+.. .......++..+++.++++++++||++|.|++++|+++++.+..
T Consensus 108 ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 108 ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 68899999852 11122356677888888999999999999999999999988865
No 54
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.93 E-value=8.7e-25 Score=151.80 Aligned_cols=129 Identities=30% Similarity=0.491 Sum_probs=111.9
Q ss_pred ccccc---ceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcE
Q psy2646 4 LLPYQ---TLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79 (168)
Q Consensus 4 ~~~t~---~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 79 (168)
+.||. ....+.+++..+.++||||||+++|..++..+++++|++++|||++++.+|+.+..|+..+.... ..+.|+
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 109 (163)
T cd04176 30 YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPI 109 (163)
T ss_pred CCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 44554 35667778888999999999999999999999999999999999999999999999999886653 357999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
++++||+|+.....+...+...++..++++++++||+++.|++++|.++++.+
T Consensus 110 viv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 110 ILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred EEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 99999999976666776777788887889999999999999999999998754
No 55
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.93 E-value=8.3e-25 Score=151.68 Aligned_cols=130 Identities=38% Similarity=0.734 Sum_probs=118.7
Q ss_pred ccccc----ceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQ----TLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~----~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||. ..+.+.+++..+.+++||++|+++|..++..+++++|++|+|||+++++||+.+..|+..+........|+
T Consensus 28 ~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~i 107 (162)
T PF00071_consen 28 YIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPI 107 (162)
T ss_dssp SETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45665 46667778999999999999999999999999999999999999999999999999999998875556999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+|+|||.|+...+.++.+++..+++.++++++++||+++.|+.++|..+++.+.
T Consensus 108 ivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 108 IVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp EEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred eeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999887889999999999999999999999999999999999998875
No 56
>PLN03118 Rab family protein; Provisional
Probab=99.93 E-value=2.2e-24 Score=156.12 Aligned_cols=133 Identities=45% Similarity=0.665 Sum_probs=112.0
Q ss_pred cccccce----eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHHhc-CCCC
Q psy2646 4 LLPYQTL----QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQ-WLEEIDRYA-CDNV 77 (168)
Q Consensus 4 ~~~t~~~----~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~ 77 (168)
+.||.+. ..+.+++..+.+.||||||+++|..++..+++++|++|+|||++++++|..+.. |...+.... ..+.
T Consensus 42 ~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~ 121 (211)
T PLN03118 42 LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDC 121 (211)
T ss_pred cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3455543 445667888999999999999999999999999999999999999999999976 555554332 3468
Q ss_pred cEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 78 piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|+++...+....
T Consensus 122 ~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 122 VKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred CEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999877777777888888888999999999999999999999999997653
No 57
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.93 E-value=9.7e-25 Score=153.58 Aligned_cols=127 Identities=22% Similarity=0.423 Sum_probs=108.5
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~pi 79 (168)
+.||++ .+.+.+++..+.+++|||+|+++|..++..+++++|++|+|||++++++|..+. .|+..+... .++.|+
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~-~~~~pi 108 (174)
T cd01871 30 YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPI 108 (174)
T ss_pred CCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCE
Confidence 455554 345577888899999999999999999999999999999999999999999996 688877554 357999
Q ss_pred EEEEecCCCCCC------------cccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSK------------KAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 80 ivv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
++||||+|+... +.++.+++..+++.++ ++++++||++|.|++++|+.+++.
T Consensus 109 ilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 109 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 999999999642 2477888889999888 599999999999999999999864
No 58
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.93 E-value=2e-24 Score=150.18 Aligned_cols=130 Identities=25% Similarity=0.510 Sum_probs=114.0
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-----
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC----- 74 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----- 74 (168)
+.||++ .+.+.+++..+.+++|||||++++..++..+++++|++|+|||++++++++.+..|+..+.....
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~ 108 (168)
T cd04119 29 YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNM 108 (168)
T ss_pred CCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccC
Confidence 566765 45667788899999999999999999999999999999999999999999999999999876542
Q ss_pred CCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 75 DNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 75 ~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
.+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+++.+.+.
T Consensus 109 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 109 ENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred CCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999765667777887888888899999999999999999999998764
No 59
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.93 E-value=3.1e-24 Score=150.04 Aligned_cols=125 Identities=44% Similarity=0.732 Sum_probs=112.3
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
...+.+++..+.+.+|||||+++|..++..+++++|++++|||++++++++.+..|+..+.....++.|+++++||.|+.
T Consensus 43 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 43 ARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred EEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 35567788889999999999999999999999999999999999999999999999999977655689999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
..+.+..+++..++...+++++++||.++.|++++|.++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 123 SRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 666777788888888889999999999999999999999988754
No 60
>KOG0395|consensus
Probab=99.93 E-value=3.8e-24 Score=152.70 Aligned_cols=135 Identities=32% Similarity=0.443 Sum_probs=123.0
Q ss_pred ccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEE
Q psy2646 5 LPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVG 83 (168)
Q Consensus 5 ~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~ 83 (168)
+++.+.+.+.++++.+.+.|+||+|+++|..+...|++++||+++||++++..||+.+..++..+.+.. ...+|+++||
T Consensus 36 ied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVG 115 (196)
T KOG0395|consen 36 IEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVG 115 (196)
T ss_pred ccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEE
Confidence 334478999999999999999999999999999999999999999999999999999999999995554 3468999999
Q ss_pred ecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 84 NKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 84 nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
||+|+...+.++.+++..++..++++|+|+||+...+++++|..+++.+.......
T Consensus 116 NK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~~~~ 171 (196)
T KOG0395|consen 116 NKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRLPREGS 171 (196)
T ss_pred EcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhhccc
Confidence 99999988999999999999999999999999999999999999999998854443
No 61
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.93 E-value=3.7e-24 Score=148.93 Aligned_cols=129 Identities=43% Similarity=0.672 Sum_probs=113.0
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||.+ .+.+.+++..+.+++||+||++++..++..++++++++|+|||++++.++..+..|+..+......+.|+
T Consensus 32 ~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi 111 (165)
T cd01868 32 SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVI 111 (165)
T ss_pred CCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 345655 4455667888899999999999999999999999999999999999999999999999987765456899
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
++|+||.|+...+.+..++...++...+++++++||++|.|++++|++++..+
T Consensus 112 ~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 112 MLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999987677777788888888889999999999999999999998764
No 62
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.93 E-value=4.6e-24 Score=148.03 Aligned_cols=123 Identities=33% Similarity=0.553 Sum_probs=109.0
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl 88 (168)
.+...+++..+.+++|||||++++..++..+++++|++++|||++++.+|+.+..|+..+.... ..+.|+++++||+|+
T Consensus 40 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl 119 (164)
T cd04145 40 TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL 119 (164)
T ss_pred EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccc
Confidence 4455688888999999999999999999999999999999999999999999999998886542 457899999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
...+.+..+++..+++.++++++++||++|.|++++|+++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 120 EHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred cccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 87666777778888888889999999999999999999998764
No 63
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.92 E-value=5.8e-24 Score=147.71 Aligned_cols=124 Identities=39% Similarity=0.593 Sum_probs=110.1
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl 88 (168)
.+...+++..+.+.+|||||+++|..++..+++++|++++|||++++++|+.+..|...+.... ..+.|+++++||+|+
T Consensus 38 ~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl 117 (164)
T smart00173 38 RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDL 117 (164)
T ss_pred EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 5666778888999999999999999999999999999999999999999999999988886543 347899999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
...+.+..+++..+++.++.+++++||+++.|++++|+++++.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 118 ESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred cccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 876667777788888888899999999999999999999998764
No 64
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.92 E-value=6e-24 Score=148.11 Aligned_cols=128 Identities=27% Similarity=0.371 Sum_probs=109.5
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc---CCCC
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA---CDNV 77 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~ 77 (168)
+.||.+ .+.+..+...+.+.+|||+|+++|..++..+++.+|++|+|||++++++++.+..|+..+.... ..+.
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~ 109 (165)
T cd04140 30 YIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKI 109 (165)
T ss_pred cCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 455554 3445567888999999999999999999999999999999999999999999999988875542 2579
Q ss_pred cEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 78 piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
|+++|+||+|+...+.+...++..++..++++++++||++|.|++++|++++..
T Consensus 110 piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 110 PIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 999999999997766777777778888888999999999999999999999753
No 65
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=6.3e-24 Score=147.88 Aligned_cols=122 Identities=48% Similarity=0.769 Sum_probs=108.3
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+.+.+++..+.+.+|||||+++|..++..+++++|++++|||++++.+|+.+..|+..+......+.|+++|+||+|+.
T Consensus 42 ~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 42 MKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 45566678788999999999999999999999999999999999999999999999999977655679999999999998
Q ss_pred CCcccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
..+.+...++..+++.++. .++++||++|.|++++|+++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 122 EQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 7767777788888888775 78999999999999999999865
No 66
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.92 E-value=5.8e-24 Score=147.35 Aligned_cols=122 Identities=43% Similarity=0.712 Sum_probs=110.3
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
...+.+++..+.+++||+||+++|..++..+++++|++++|||+++++++..+..|+..+.....++.|+++++||.|+.
T Consensus 39 ~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 39 SKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred EEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 44567788889999999999999999999999999999999999999999999999998876656689999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
..+.+..+++..++..++++++++||+++.|++++|+++++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 119 DQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred hhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 777777888888898889999999999999999999999875
No 67
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.92 E-value=4.5e-24 Score=149.70 Aligned_cols=122 Identities=24% Similarity=0.478 Sum_probs=106.3
Q ss_pred eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 11 QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 11 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
..+.+++..+.+++|||||+++|..++..+++++|++|+|||++++++|+.+. .|+..+... .++.|+++++||+|+.
T Consensus 37 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~ 115 (174)
T smart00174 37 ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHF-CPNTPIILVGTKLDLR 115 (174)
T ss_pred EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEecChhhh
Confidence 34566888899999999999999999999999999999999999999999986 588888665 3579999999999986
Q ss_pred CC------------cccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 90 SK------------KAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 90 ~~------------~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
.. ..++.+++..+++.++. +++++||+++.|++++|+.+++.+.
T Consensus 116 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 116 EDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred hChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence 52 23677788889988885 8999999999999999999998764
No 68
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=6.1e-24 Score=154.61 Aligned_cols=130 Identities=27% Similarity=0.486 Sum_probs=109.9
Q ss_pred cccccceee----eeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTLQN----KKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~~~----~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++... +.+++..+.+.+|||+|+++|..++..+++++|++|+|||++++++|+.+..|+..+... ..+.|+
T Consensus 42 ~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~-~~~~pi 120 (219)
T PLN03071 42 YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPI 120 (219)
T ss_pred cCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCcE
Confidence 567776443 334677899999999999999999999999999999999999999999999999999766 457999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
++||||+|+... .+..+++ .++...+++++++||++|.|++++|.+++..+....
T Consensus 121 ilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~~ 175 (219)
T PLN03071 121 VLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175 (219)
T ss_pred EEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcCc
Confidence 999999999643 3444444 677777899999999999999999999999887543
No 69
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=1.6e-23 Score=150.16 Aligned_cols=156 Identities=21% Similarity=0.283 Sum_probs=122.5
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl 88 (168)
...+.+++..+.+.+||++|+++|..++..++.++|++|+|||++++.+++.+..|+..+.... ..+.|+++++||+|+
T Consensus 37 ~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 116 (198)
T cd04147 37 RKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADS 116 (198)
T ss_pred eEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccc
Confidence 4556677888899999999999999899999999999999999999999999999998886654 347999999999998
Q ss_pred CC-CcccCHHHHHHHHH-hcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccCCCCCCCCCCCCC
Q psy2646 89 TS-KKAVDYQVAKEYAD-HLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPSSESDAKKLNLNSGKPVDAPRSGG 166 (168)
Q Consensus 89 ~~-~~~v~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (168)
.. ...+......+... .++.+++++||++|.|++++|+++.+.+.. .....+..+...+..+...|++++.++..+
T Consensus 117 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
T cd04147 117 LEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANL--PYNLSPALRRRRESLPSEIQRRPPMNKTNS 194 (198)
T ss_pred ccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhc--ccccchhhHHHHhhccHhhhcCCCCCCCCc
Confidence 65 34455444444433 456789999999999999999999987753 222233333344444555899999999888
Q ss_pred C
Q psy2646 167 C 167 (168)
Q Consensus 167 c 167 (168)
|
T Consensus 195 ~ 195 (198)
T cd04147 195 C 195 (198)
T ss_pred c
Confidence 8
No 70
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.92 E-value=9.6e-24 Score=146.25 Aligned_cols=127 Identities=31% Similarity=0.562 Sum_probs=110.3
Q ss_pred ccccccee----eeeeC--CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC
Q psy2646 4 LLPYQTLQ----NKKEE--RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNV 77 (168)
Q Consensus 4 ~~~t~~~~----~~~~~--~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 77 (168)
+.||++.. .+.+. +..+.+++|||||+++|..++..+++++|++++|||+++++++..+..|+..+... ..+.
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~-~~~~ 107 (162)
T cd04106 29 YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE-CGDI 107 (162)
T ss_pred CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCC
Confidence 45666643 34455 67789999999999999999999999999999999999999999999999988654 3579
Q ss_pred cEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 78 piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
|+++++||.|+..+..+..+++..+++.++++++++||+++.|++++|+++...
T Consensus 108 p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 108 PMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred CEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 999999999998776777788888999899999999999999999999998753
No 71
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.92 E-value=1.3e-23 Score=145.94 Aligned_cols=124 Identities=35% Similarity=0.552 Sum_probs=105.7
Q ss_pred cceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 8 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
+......+++..+.+.+|||+|+++|..++..+++++|++|+|||++++.+++.+..|+..+... .++.|+++++||+|
T Consensus 37 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~p~ivv~nK~D 115 (161)
T cd04124 37 LYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY-RPEIPCIVVANKID 115 (161)
T ss_pred EEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEECcc
Confidence 33455667888999999999999999999999999999999999999999999999999998665 35689999999999
Q ss_pred CCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 88 QTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 88 l~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+... . ..+...+++..+++++++||++|.|++++|+.+++.+.++
T Consensus 116 l~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 116 LDPS--V-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred Cchh--H-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 8532 1 2345566677788999999999999999999999887654
No 72
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.92 E-value=1.7e-23 Score=146.77 Aligned_cols=132 Identities=33% Similarity=0.473 Sum_probs=110.4
Q ss_pred ccccccce----eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCC
Q psy2646 3 LLLPYQTL----QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNV 77 (168)
Q Consensus 3 ~~~~t~~~----~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~ 77 (168)
.+.||++. +.+.+++..+.+++|||||+++|..++..+++++|++++|||+++++++..+..|+..+.+.. ....
T Consensus 28 ~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 107 (170)
T cd04108 28 NYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSV 107 (170)
T ss_pred CCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 35677753 445667888999999999999999999999999999999999999999999999999885543 3357
Q ss_pred cEEEEEecCCCCCCcc--cCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 78 NKLLVGNKNDQTSKKA--VDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 78 piivv~nK~Dl~~~~~--v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
|+++|+||.|+..... +...++..+++.++.+++++||++|.|++++|+.++..+.+
T Consensus 108 ~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 108 LLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred eEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 8999999999865433 34556777888888899999999999999999999988753
No 73
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.92 E-value=1.7e-23 Score=144.59 Aligned_cols=128 Identities=32% Similarity=0.537 Sum_probs=109.6
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcE
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK 79 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi 79 (168)
+.||.+ .+.+.+++..+.+.+|||+|+++|..++..+++++|++++|||+++..+|..+..|+..+.+.. ..+.|+
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~pi 109 (162)
T cd04138 30 YDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPM 109 (162)
T ss_pred cCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 345544 4556678888899999999999999999999999999999999999999999999998886653 347899
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
++++||+|+.+ +.+...++..+++.++++++++||++|.|++++|+++++.+
T Consensus 110 ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 110 VLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred EEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999876 35566777788888889999999999999999999998654
No 74
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.92 E-value=1.7e-23 Score=145.15 Aligned_cols=125 Identities=50% Similarity=0.812 Sum_probs=111.6
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
...+.+++..+.+.+||+||++++..++..+++.+|++|+|||++++.+++.+..|+..+..+..++.|+++++||+|+.
T Consensus 39 ~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 39 TKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred EEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 34566678888999999999999999999999999999999999999999999999999877655689999999999997
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+...+..+.+..+++.++++++++||.++.|++++|+++...+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 119 DQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 766677778888888889999999999999999999999988754
No 75
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.92 E-value=2.2e-23 Score=145.91 Aligned_cols=129 Identities=36% Similarity=0.650 Sum_probs=112.1
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhc-ccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCC
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFR-TITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNV 77 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~ 77 (168)
+.||++ .+.+.+++..+.+.+|||+|+++|. .++..+++++|++++|||++++.+|..+..|+..+.... ..+.
T Consensus 31 ~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 110 (170)
T cd04115 31 TEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEV 110 (170)
T ss_pred cccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCC
Confidence 445554 3456678888999999999999886 578899999999999999999999999999999886653 3579
Q ss_pred cEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccC---CCCHHHHHHHHHHHH
Q psy2646 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKN---GANVEQAFLTMATEI 132 (168)
Q Consensus 78 piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~---~~~i~~i~~~l~~~~ 132 (168)
|+++++||+|+...+.+...++..+++.++++++++||++ +.+++++|..+++.+
T Consensus 111 p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 111 PRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 9999999999988777888888889988889999999999 889999999998765
No 76
>KOG0393|consensus
Probab=99.92 E-value=9.1e-24 Score=148.54 Aligned_cols=134 Identities=25% Similarity=0.438 Sum_probs=118.7
Q ss_pred ccccccc---eeeeeeC-CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCC
Q psy2646 3 LLLPYQT---LQNKKEE-RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNV 77 (168)
Q Consensus 3 ~~~~t~~---~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~ 77 (168)
.|+||++ +..+.++ ++.+.+.+|||+||++|..+++..|.++|.++++|+++++.||+.+ ..|+.++..+ .++.
T Consensus 32 ~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~-cp~v 110 (198)
T KOG0393|consen 32 EYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH-CPNV 110 (198)
T ss_pred cccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh-CCCC
Confidence 4778876 6778885 9999999999999999999999999999999999999999999996 5799999888 4889
Q ss_pred cEEEEEecCCCCC------------CcccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 78 NKLLVGNKNDQTS------------KKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 78 piivv~nK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
|+|+||+|.||.. ...++.+++..+++..| ..|+||||++..|+.++|+..++.+.....
T Consensus 111 piiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 111 PIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred CEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999863 23477788999999998 789999999999999999999998876554
No 77
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.91 E-value=8.5e-24 Score=149.69 Aligned_cols=130 Identities=17% Similarity=0.291 Sum_probs=103.3
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv 82 (168)
+.||++.....++...+.+++||+||++++..+|..+++++|++|+|||+++++++..+..++..+... ...+.|++|+
T Consensus 45 ~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv 124 (181)
T PLN00223 45 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 124 (181)
T ss_pred ccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEE
Confidence 568988888778777899999999999999999999999999999999999999999888777766322 1347899999
Q ss_pred EecCCCCCCcccCHHHHHHHHHhc-----CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYADHL-----KIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+||+|+.... ..++........ .+.++++||++|+|+.++|+||.+.+.++
T Consensus 125 ~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 125 ANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred EECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence 9999997542 333333322111 12466899999999999999999887654
No 78
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.91 E-value=3.2e-23 Score=144.92 Aligned_cols=127 Identities=31% Similarity=0.576 Sum_probs=109.0
Q ss_pred cccccce----eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc----CC
Q psy2646 4 LLPYQTL----QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA----CD 75 (168)
Q Consensus 4 ~~~t~~~----~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~ 75 (168)
+.||++. +.+.++++.+.++|||+||++++..++..+++++|++++|||++++++++.+..|...+.... ..
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 113 (170)
T cd04116 34 LFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPE 113 (170)
T ss_pred cCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCC
Confidence 3456553 456678999999999999999999999999999999999999999999999999998875543 24
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
+.|+++++||+|+. .+.+..+++.++++.++ .+++++||++|.|+.++|+++++.
T Consensus 114 ~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 114 SFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999986 44567788888888887 589999999999999999999865
No 79
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.91 E-value=4.9e-23 Score=143.90 Aligned_cols=124 Identities=29% Similarity=0.502 Sum_probs=109.9
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl 88 (168)
.+.+.+++..+.+++|||||+++|..+++.++++++++++|||++++++++.+..|...+.... ..+.|+++++||.|+
T Consensus 39 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~ 118 (168)
T cd04177 39 RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADL 118 (168)
T ss_pred EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhc
Confidence 4556678888999999999999999999999999999999999999999999999999886543 457999999999999
Q ss_pred CCCcccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
.+.+.+..++...+++.++ ++++++||+++.|+.++|++++.++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 119 EDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred cccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 8777777777778888887 89999999999999999999997664
No 80
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.91 E-value=2.8e-23 Score=144.59 Aligned_cols=125 Identities=26% Similarity=0.350 Sum_probs=107.9
Q ss_pred ceeeeeeCCeEEEEEEEeCCCchh-hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEec
Q psy2646 9 TLQNKKEERTRTLIVIWDTAGQER-FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA--CDNVNKLLVGNK 85 (168)
Q Consensus 9 ~~~~~~~~~~~~~l~l~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK 85 (168)
..+.+.++++.+.+++|||||+++ +...+..+++++|++|+|||++++++|+.+..|+..+.... ..+.|+++|+||
T Consensus 36 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK 115 (165)
T cd04146 36 YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNK 115 (165)
T ss_pred ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 455677889999999999999985 34556788999999999999999999999999998886653 347999999999
Q ss_pred CCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCC-CHHHHHHHHHHHHH
Q psy2646 86 NDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGA-NVEQAFLTMATEIK 133 (168)
Q Consensus 86 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~-~i~~i~~~l~~~~~ 133 (168)
+|+...+.+..+++..+++.++++++++||+++. |++++|..+++.+.
T Consensus 116 ~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 116 ADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 9997766778788888998889999999999995 99999999998764
No 81
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.91 E-value=5.3e-23 Score=142.67 Aligned_cols=123 Identities=46% Similarity=0.722 Sum_probs=111.1
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+.+.+++..+.+.+||+||++++...+..+++++|++++|+|+++++++..+..|+..+........|+++++||+|+.
T Consensus 40 ~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 40 TQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred EEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 56778889999999999999999999999999999999999999999999999999999877655679999999999998
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
..+.+...+...++..++++++++||++|.|+.++|+++++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 120 SKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred ccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6666777778888888889999999999999999999999875
No 82
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.91 E-value=4.6e-23 Score=143.96 Aligned_cols=128 Identities=27% Similarity=0.515 Sum_probs=107.4
Q ss_pred cccccceeee----eeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTLQNK----KEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~~~~----~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++.... ..+++.+.+.+|||+|++++..++..++..+|++|+|||+++++++..+..|+..+.... .+.|+
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~pi 107 (166)
T cd00877 29 YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-GNIPI 107 (166)
T ss_pred CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCcE
Confidence 5567664433 335778999999999999999999999999999999999999999999999999997764 37999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
++||||+|+... .+. .+..++++..+++++++||++|.|++++|++|++.+.+
T Consensus 108 iiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 108 VLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred EEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 999999999743 333 33445667777899999999999999999999988864
No 83
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.91 E-value=4e-23 Score=142.97 Aligned_cols=122 Identities=36% Similarity=0.614 Sum_probs=107.9
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+.+.+++..+++++|||||++++..++..+++++|++++|||++++++|..+..|+..+......+.|+++++||+|+.
T Consensus 39 ~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 39 SKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 45566778888999999999999999999999999999999999999999999999998865544469999999999997
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
+.+.+..++...+++..+++++++||+++.|++++|.++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 119 DKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 666677777888888888999999999999999999999864
No 84
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.91 E-value=5.4e-23 Score=151.95 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=110.3
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh--------
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-------- 72 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-------- 72 (168)
+.||++ .+.+.+++..+.+.||||+|++.|..++..++.++|++|+|||+++.++|+.+..|+..+...
T Consensus 29 y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~ 108 (247)
T cd04143 29 YTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKT 108 (247)
T ss_pred CCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhccccccc
Confidence 456664 566778899999999999999999888888999999999999999999999999999988553
Q ss_pred -cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHh-cCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 73 -ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADH-LKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 73 -~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
...+.|+++++||+|+...+.+..+++.+++.. .++.++++||+++.|++++|++++..+.
T Consensus 109 ~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 109 KENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred ccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 124789999999999976566777777776653 4678999999999999999999998653
No 85
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.91 E-value=6.5e-23 Score=142.43 Aligned_cols=128 Identities=27% Similarity=0.482 Sum_probs=108.8
Q ss_pred cccccce----eeeeeC-CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc
Q psy2646 4 LLPYQTL----QNKKEE-RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78 (168)
Q Consensus 4 ~~~t~~~----~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 78 (168)
+.||.+. +...++ +..+.+.+|||||++.+..++..+++++|++++|||+++++++..+..|+..+.... .+.|
T Consensus 31 ~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p 109 (164)
T cd04101 31 YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-KHMP 109 (164)
T ss_pred CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCC
Confidence 4556553 334454 677999999999999999999999999999999999999999999999999886653 5689
Q ss_pred EEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+++|+||+|+.+...+.......+....+++++++||+++.|++++|+.+.+.+
T Consensus 110 ~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 110 GVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 999999999977666776666677777788999999999999999999998764
No 86
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.91 E-value=1.1e-22 Score=140.58 Aligned_cols=125 Identities=37% Similarity=0.658 Sum_probs=110.0
Q ss_pred cceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 8 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
.....+.+.+..+.+.+||+||++.+..+++.+++++|++++|||++++++++.+..|+..+......+.|+++++||+|
T Consensus 37 ~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D 116 (162)
T cd04123 37 FFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKID 116 (162)
T ss_pred EEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 33455666778889999999999999999999999999999999999999999999999988776545789999999999
Q ss_pred CCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 88 QTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 88 l~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+...+.+..++..++.+..+++++++||+++.|++++|+++.+.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 117 LERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 987667777777788888899999999999999999999998764
No 87
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.91 E-value=2.5e-23 Score=145.62 Aligned_cols=130 Identities=16% Similarity=0.268 Sum_probs=107.5
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv 82 (168)
+.||++.....++...+.+.+|||||++++..+|..+++++|++++|||+++++++..+..|+..+.... ..+.|++++
T Consensus 27 ~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv 106 (169)
T cd04158 27 PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIF 106 (169)
T ss_pred cCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEE
Confidence 5788887777777778999999999999999999999999999999999999999999999988885432 345899999
Q ss_pred EecCCCCCCcccCHHHHHHHHHhcC------CCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYADHLK------IPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~~~~------~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+||+|+.. .++.+++..+....+ +.++++||++|.|++++|+|+.+.+...
T Consensus 107 ~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 107 ANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred EeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 99999964 355566666554222 3688999999999999999998876553
No 88
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.91 E-value=4.7e-24 Score=148.72 Aligned_cols=127 Identities=17% Similarity=0.246 Sum_probs=106.5
Q ss_pred ccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEE
Q psy2646 3 LLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLV 82 (168)
Q Consensus 3 ~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv 82 (168)
.+.||++.....++++++.+.+||+||+++|..+|..+++++|++|+|||.+++.++..+..|+..+... .++.|++++
T Consensus 27 ~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~-~~~~piilv 105 (164)
T cd04162 27 SVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQH-PPDLPLVVL 105 (164)
T ss_pred cccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhC-CCCCcEEEE
Confidence 3678988888888888899999999999999999999999999999999999999999999888887544 257999999
Q ss_pred EecCCCCCCcccCH----HHHHHHHHhcCCCEEEEeccC------CCCHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDY----QVAKEYADHLKIPFLETSAKN------GANVEQAFLTMAT 130 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~----~~~~~~~~~~~~~~~~vSa~~------~~~i~~i~~~l~~ 130 (168)
+||+|+...+.+.. ..+..+++..++.++++||++ ++|++++|+.++.
T Consensus 106 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 106 ANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred EeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 99999976554331 123445566678899999999 9999999998863
No 89
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.91 E-value=1.7e-23 Score=146.39 Aligned_cols=125 Identities=19% Similarity=0.321 Sum_probs=101.2
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv 82 (168)
+.||++.....+....+.+++|||||++++..+|..+++++|++|+|||++++.++..+..|+..+... ...+.|++++
T Consensus 37 ~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv 116 (168)
T cd04149 37 TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVF 116 (168)
T ss_pred ccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEE
Confidence 467887776666667789999999999999999999999999999999999999999988877766432 1346899999
Q ss_pred EecCCCCCCcccCHHHHHHHHHh-----cCCCEEEEeccCCCCHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYADH-----LKIPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
+||+|+... +..+++..+... ..++++++||++|.|++++|+||.+
T Consensus 117 ~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 117 ANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 999998653 445555554421 2357899999999999999999864
No 90
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.91 E-value=8.5e-23 Score=141.58 Aligned_cols=116 Identities=19% Similarity=0.398 Sum_probs=100.4
Q ss_pred eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCC
Q psy2646 11 QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQT 89 (168)
Q Consensus 11 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~ 89 (168)
+.+.+++..+.+++|||+|++. ..+++++|++++|||++++++|+.+..|+..+.... ..+.|+++||||.|+.
T Consensus 38 ~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 38 KEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred EEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 5577889889999999999975 347789999999999999999999999999997664 3578999999999985
Q ss_pred --CCcccCHHHHHHHHHhc-CCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 90 --SKKAVDYQVAKEYADHL-KIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 90 --~~~~v~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
..+.++.+++.++++.. ++.|++|||+++.|++++|..+++.
T Consensus 113 ~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 113 ESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred hcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 35678888888888776 5899999999999999999999854
No 91
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.91 E-value=5e-23 Score=150.03 Aligned_cols=130 Identities=24% Similarity=0.310 Sum_probs=110.5
Q ss_pred ceeeeeeCCeEEEEEEEeCCCchhhcccchhhhc-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecC
Q psy2646 9 TLQNKKEERTRTLIVIWDTAGQERFRTITSSYYR-GAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKN 86 (168)
Q Consensus 9 ~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~ 86 (168)
..+.+.+++..+.+.+|||+|++. .+...++. ++|++++|||++++.+|+.+..|+..+.... ..+.|+++|+||+
T Consensus 39 ~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~ 116 (221)
T cd04148 39 YERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKS 116 (221)
T ss_pred eEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECh
Confidence 467778889999999999999983 33455677 9999999999999999999999999886653 3579999999999
Q ss_pred CCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCC
Q psy2646 87 DQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDE 140 (168)
Q Consensus 87 Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~ 140 (168)
|+...+.+..+++..++...+++++++||+++.|++++|++++..+..+....+
T Consensus 117 Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~~~ 170 (221)
T cd04148 117 DLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDSKE 170 (221)
T ss_pred hccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcccc
Confidence 998777778777888888888999999999999999999999999986554433
No 92
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.91 E-value=1.2e-22 Score=142.59 Aligned_cols=119 Identities=23% Similarity=0.394 Sum_probs=103.5
Q ss_pred eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 11 QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 11 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
..+.+++..+.+++|||||+++|..++..+++++|++|+|||++++++|+.+. .|+..+... .++.|+++++||.|+.
T Consensus 39 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~ 117 (173)
T cd04130 39 VVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLR 117 (173)
T ss_pred EEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhc
Confidence 45677888899999999999999999999999999999999999999999985 688877653 3468999999999986
Q ss_pred C------------CcccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHH
Q psy2646 90 S------------KKAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 90 ~------------~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
. .+.+..+++..+++..+. +++++||++|.|++++|+.++.
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 118 TDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred cChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 3 345677788889988886 8999999999999999998864
No 93
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.91 E-value=9e-24 Score=148.76 Aligned_cols=127 Identities=17% Similarity=0.302 Sum_probs=100.7
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv 82 (168)
+.||++.....+..+.+.+++|||||++++..+|..|++++|++|+|||++++++++.+..|+..+... ...+.|++|+
T Consensus 41 ~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv 120 (175)
T smart00177 41 TIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVF 120 (175)
T ss_pred cCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEE
Confidence 568888777666667789999999999999999999999999999999999999999998888877432 2346899999
Q ss_pred EecCCCCCCcccCHHHHHHHHH-----hcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYAD-----HLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+||+|+.... ..++...... ...+.++++||++|.|++++|+||..++
T Consensus 121 ~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 121 ANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 9999996532 2223222221 1234577899999999999999998765
No 94
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.90 E-value=1.8e-22 Score=144.75 Aligned_cols=135 Identities=20% Similarity=0.217 Sum_probs=107.5
Q ss_pred cccccc----eeeeeeCCeEEEEEEEeCCCchhhccc--------chhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH
Q psy2646 4 LLPYQT----LQNKKEERTRTLIVIWDTAGQERFRTI--------TSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDR 71 (168)
Q Consensus 4 ~~~t~~----~~~~~~~~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 71 (168)
+.||.+ ...+.+++..+.+.||||||.+.+... ...+++++|++|+|||++++++|+.+..|+..+..
T Consensus 29 ~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~ 108 (198)
T cd04142 29 YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILE 108 (198)
T ss_pred cCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 456654 245667888899999999997654321 23457899999999999999999999999988866
Q ss_pred hc---CCCCcEEEEEecCCCCCCcccCHHHHHHHHH-hcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhcc
Q psy2646 72 YA---CDNVNKLLVGNKNDQTSKKAVDYQVAKEYAD-HLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138 (168)
Q Consensus 72 ~~---~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~ 138 (168)
.. ..+.|+++++||+|+...+.+..+++..++. .++++++++||++|.|++++|+.++..+..+.+.
T Consensus 109 ~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 109 TRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred hcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence 53 3579999999999997766667666666654 5689999999999999999999999887755443
No 95
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.90 E-value=1e-23 Score=146.30 Aligned_cols=125 Identities=18% Similarity=0.317 Sum_probs=98.1
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv 82 (168)
+.||++.....+..+.+.+.+|||||++++..+|..+++++|++|||||++++.+++.+..|+..+... ...+.|++++
T Consensus 28 ~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 107 (159)
T cd04150 28 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVF 107 (159)
T ss_pred cCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEE
Confidence 568888766666667789999999999999999999999999999999999999999998877776432 2346899999
Q ss_pred EecCCCCCCcccCHHHH-HHHH----HhcCCCEEEEeccCCCCHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVA-KEYA----DHLKIPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
+||+|+... ....+. ..+. ...++.++++||++|.|++++|+||..
T Consensus 108 ~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 108 ANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999653 222222 2221 112346789999999999999999863
No 96
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.90 E-value=2.4e-23 Score=147.51 Aligned_cols=131 Identities=20% Similarity=0.319 Sum_probs=102.5
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv 82 (168)
+.||++.....++...+.+.+|||||++++..+|..+++++|++|+|||+++++++..+..++..+... ...+.|++++
T Consensus 45 ~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv 124 (182)
T PTZ00133 45 TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVF 124 (182)
T ss_pred cCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEE
Confidence 568888777777777899999999999999999999999999999999999999999988777766332 1346899999
Q ss_pred EecCCCCCCcccCHHHHHHHH-----HhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYA-----DHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
+||.|+... ....+..... ....+.++++||++|.|++++|+++...+.++.
T Consensus 125 ~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 125 ANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred EeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999998653 2222222221 112245779999999999999999998877653
No 97
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.89 E-value=1e-21 Score=135.98 Aligned_cols=127 Identities=43% Similarity=0.745 Sum_probs=108.3
Q ss_pred cccccce----eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCc
Q psy2646 4 LLPYQTL----QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVN 78 (168)
Q Consensus 4 ~~~t~~~----~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p 78 (168)
+.||.+. ..+.+++..+.+.+||+||++.+..++..+++++|++++|||++++++++.+..|+..+.... ..+.|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ 108 (161)
T cd01863 29 LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIV 108 (161)
T ss_pred cCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCc
Confidence 3455543 445567788999999999999999999999999999999999999999999999999887664 45799
Q ss_pred EEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
+++++||+|+... .+..++...++...+++++++||++|.|++++|+++...
T Consensus 109 ~~iv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 109 KMLVGNKIDKENR-EVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred EEEEEECCccccc-ccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 9999999999743 456677778888889999999999999999999998865
No 98
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.89 E-value=1.2e-21 Score=135.76 Aligned_cols=124 Identities=37% Similarity=0.538 Sum_probs=109.1
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl 88 (168)
.+...+++..+.+.+|||||++++..++..+++.+++++++||++++.++..+..|+..+.... ..+.|+++|+||+|+
T Consensus 38 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~ 117 (164)
T cd04139 38 RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDL 117 (164)
T ss_pred EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccc
Confidence 4556778888999999999999999999999999999999999999999999999999886653 347999999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
.+.+.....+...+++.++++++++||+++.|++++|+++.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 118 EDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred ccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 765556667777788888899999999999999999999998765
No 99
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.89 E-value=1.4e-21 Score=136.59 Aligned_cols=126 Identities=37% Similarity=0.605 Sum_probs=108.7
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEec
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA----CDNVNKLLVGNK 85 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piivv~nK 85 (168)
.+.+.+++..+.+.+||+||++.+..++..+++++|++|++||++++.+++.+..|...+.... ..+.|+++++||
T Consensus 39 ~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (172)
T cd01862 39 TKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNK 118 (172)
T ss_pred EEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEEC
Confidence 3556778888999999999999999999999999999999999999999999988888764442 236899999999
Q ss_pred CCCCCCcccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 86 NDQTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 86 ~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+|+..++.+..++...+++..+ ++++++||.+|.|++++|+++.+.+.++
T Consensus 119 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 119 IDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred cccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9997655666677777888887 7999999999999999999999888765
No 100
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.89 E-value=9.1e-22 Score=137.96 Aligned_cols=128 Identities=23% Similarity=0.400 Sum_probs=107.7
Q ss_pred cccccc---eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQT---LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~---~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~pi 79 (168)
+.||.. ...+.+++..+.+.+|||||++.|..++..+++++|++++|||++++.+|+.+. .|+..+... .++.|+
T Consensus 29 ~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~pi 107 (174)
T cd04135 29 YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPY 107 (174)
T ss_pred CCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCE
Confidence 445543 335667888899999999999999999999999999999999999999999885 577777554 568999
Q ss_pred EEEEecCCCCCC------------cccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSK------------KAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 80 ivv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
++++||+|+.+. +.++.+++..+++..+. +++++||++|.|++++|+.++..+
T Consensus 108 ivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 108 LLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 999999998542 25667778888888885 799999999999999999998775
No 101
>KOG0070|consensus
Probab=99.89 E-value=1.6e-22 Score=139.19 Aligned_cols=132 Identities=21% Similarity=0.313 Sum_probs=111.2
Q ss_pred cccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEE
Q psy2646 2 RLLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKL 80 (168)
Q Consensus 2 ~~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pii 80 (168)
-+++||++.....+..+++.+.+||.+|+++++++|+.|+.+.+++|||+|.+|.+.+.++...+..+.... ....|++
T Consensus 43 vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~ll 122 (181)
T KOG0070|consen 43 VTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLL 122 (181)
T ss_pred ccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEE
Confidence 356999999999999999999999999999999999999999999999999999999999988777775543 3579999
Q ss_pred EEEecCCCCCCcccCHHHHHHHH-----HhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 81 LVGNKNDQTSKKAVDYQVAKEYA-----DHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 81 vv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+++||+|+++.. +..++.+.. ......+..++|.+|+|+.+.++|+...+..+
T Consensus 123 v~aNKqD~~~al--s~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 123 VFANKQDLPGAL--SAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred EEechhhccccC--CHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhcc
Confidence 999999998743 333333222 22446788999999999999999999887653
No 102
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=1.8e-21 Score=135.74 Aligned_cols=122 Identities=45% Similarity=0.750 Sum_probs=106.7
Q ss_pred eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 11 QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 11 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
+.+.+++..+.+.+||+||++.|...+..+++.+|++++|||+++.++++.+..|+..+......+.|+++++||+|+..
T Consensus 47 ~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 47 KTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred EEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 34667888899999999999999998899999999999999999999999999999888666555799999999999987
Q ss_pred CcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 91 KKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 91 ~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
.+.+.......+.+....+++++||++|.|++++|+++.+.+
T Consensus 127 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 127 RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 667776666777776678899999999999999999998764
No 103
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.89 E-value=9.9e-22 Score=137.62 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=107.0
Q ss_pred ccccccce----eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc
Q psy2646 3 LLLPYQTL----QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78 (168)
Q Consensus 3 ~~~~t~~~----~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 78 (168)
.+.||++. +.+.+++..+.+.+||++|++++..++..+++++|++++|||++++++|+.+..|+..+... .+.|
T Consensus 33 ~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~--~~~p 110 (169)
T cd01892 33 AYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML--GEIP 110 (169)
T ss_pred cCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC--CCCe
Confidence 35677763 45677888899999999999999999999999999999999999999999998888866322 3689
Q ss_pred EEEEEecCCCCCCcccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+++|+||+|+.+.+.+...+..++++.+++ .++++||+++.|++++|+.+++.+.
T Consensus 111 ~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 111 CLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred EEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 999999999975544433455667777776 4799999999999999999998765
No 104
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.88 E-value=2.7e-21 Score=135.70 Aligned_cols=128 Identities=23% Similarity=0.493 Sum_probs=104.7
Q ss_pred cccccce---eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTL---QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~---~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~pi 79 (168)
+.||++. ..+.+++..+.+.+|||+|+++|..++..+++++|++++|||++++++|+.+. .|+..+... ..+.|+
T Consensus 30 ~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~-~~~~pi 108 (175)
T cd01870 30 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPI 108 (175)
T ss_pred CCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCE
Confidence 4556543 45567888899999999999999999888999999999999999999998885 577777554 357899
Q ss_pred EEEEecCCCCCC------------cccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSK------------KAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 80 ivv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
++++||+|+... ..+...++.++++.++ .+++++||++|.|++++|+++.+.+
T Consensus 109 ilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 109 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 999999998642 2244566777777776 4899999999999999999998764
No 105
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.88 E-value=1.8e-21 Score=133.55 Aligned_cols=122 Identities=47% Similarity=0.785 Sum_probs=107.0
Q ss_pred cceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 8 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
.....+.+++..+.+.+||+||++.+...+..+++++|++++|+|+++++++..+..|+..+........|+++++||+|
T Consensus 37 ~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 116 (159)
T cd00154 37 FKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKID 116 (159)
T ss_pred eEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccc
Confidence 33455566677899999999999999999999999999999999999999999999999998776445799999999999
Q ss_pred CCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHH
Q psy2646 88 QTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMA 129 (168)
Q Consensus 88 l~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~ 129 (168)
+........++...+...++++++++||+++.|++++|.++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 117 LEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 975556677888888888899999999999999999999986
No 106
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.88 E-value=6.5e-21 Score=134.42 Aligned_cols=127 Identities=32% Similarity=0.461 Sum_probs=110.4
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl 88 (168)
.....+++..+.+++|||||+++|..++..++..+++++++||+++.++++.+..|+..+.+.. ..+.|+++++||+|+
T Consensus 39 ~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 118 (180)
T cd04137 39 SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDL 118 (180)
T ss_pred EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhh
Confidence 5666777888899999999999999999999999999999999999999999999988886543 357899999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
...+.+...+...++..++.+++++||+++.|+.++|.++.+.+....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 119 HTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred hhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 766666666677777878889999999999999999999998886553
No 107
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.88 E-value=1.7e-21 Score=138.12 Aligned_cols=131 Identities=24% Similarity=0.362 Sum_probs=101.1
Q ss_pred ccccceeee--ee---CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCc
Q psy2646 5 LPYQTLQNK--KE---ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVN 78 (168)
Q Consensus 5 ~~t~~~~~~--~~---~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p 78 (168)
.||.+.... .+ ++..+.+.+|||||++++..+|..+++++|++++|||+++++++..+..|+..+.... ..+.|
T Consensus 32 ~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p 111 (183)
T cd04152 32 VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP 111 (183)
T ss_pred CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc
Confidence 466653332 22 3467899999999999999999999999999999999999999998888888775432 34799
Q ss_pred EEEEEecCCCCCCcccCHHHHHHHHHh------cCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVAKEYADH------LKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~~~~~~~------~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
+++++||+|+.+. +..++...+... .+++++++||+++.|++++|+++.+.+.+..+
T Consensus 112 ~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 112 VLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred EEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHh
Confidence 9999999998642 333444443321 12468999999999999999999988865443
No 108
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.88 E-value=1.6e-22 Score=141.39 Aligned_cols=128 Identities=20% Similarity=0.283 Sum_probs=101.9
Q ss_pred ccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEE
Q psy2646 3 LLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLL 81 (168)
Q Consensus 3 ~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiv 81 (168)
.+.||++.....++.+.+.+++||+||++++..+|..|++++|++|+|||+++..++..+..|+..+.... ..+.|+++
T Consensus 26 ~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~pili 105 (167)
T cd04161 26 KVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILV 105 (167)
T ss_pred cccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEE
Confidence 36788887777777778899999999999999999999999999999999999999999999998885542 34789999
Q ss_pred EEecCCCCCCcccCH-HH---HHHHHHhc--CCCEEEEeccCC------CCHHHHHHHHHH
Q psy2646 82 VGNKNDQTSKKAVDY-QV---AKEYADHL--KIPFLETSAKNG------ANVEQAFLTMAT 130 (168)
Q Consensus 82 v~nK~Dl~~~~~v~~-~~---~~~~~~~~--~~~~~~vSa~~~------~~i~~i~~~l~~ 130 (168)
++||+|+...+.... .. +..+++.. .+.++++||++| .|+.+.|+||..
T Consensus 106 v~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 106 LANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 999999976542111 11 11233222 357888999998 899999999974
No 109
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.88 E-value=8.4e-22 Score=138.30 Aligned_cols=125 Identities=22% Similarity=0.277 Sum_probs=98.9
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv 82 (168)
+.||++.....+..+.+.+.+|||||++.+..+|..+++++|++++|||++++.++.....|+..+... ...+.|++++
T Consensus 42 ~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv 121 (173)
T cd04154 42 ISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLIL 121 (173)
T ss_pred cCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEE
Confidence 567776544444444688999999999999999999999999999999999999999988888777432 2357999999
Q ss_pred EecCCCCCCcccCHHHHHHHHH-----hcCCCEEEEeccCCCCHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYAD-----HLKIPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
+||+|+.+.. ..++...+.+ ..+++++++||++|.|++++|+++..
T Consensus 122 ~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 122 ANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 9999996532 3344444442 23578999999999999999999864
No 110
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.88 E-value=3.2e-22 Score=138.52 Aligned_cols=126 Identities=19% Similarity=0.281 Sum_probs=99.2
Q ss_pred ccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc---CCCCcE
Q psy2646 3 LLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA---CDNVNK 79 (168)
Q Consensus 3 ~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~pi 79 (168)
.+.||++.....++...+.+++|||||++++..+|..+++++|++|+|+|++++.++..+..|+..+.... ..+.|+
T Consensus 28 ~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 107 (162)
T cd04157 28 IIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPI 107 (162)
T ss_pred eecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCE
Confidence 35788887766666677899999999999999999999999999999999999999988888887774431 247999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHH-----hcCCCEEEEeccCCCCHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYAD-----HLKIPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
++++||+|+.+... ..+...... ...++++++||++|.|++++|++|.+
T Consensus 108 iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 108 LFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 99999999865322 222222211 12346899999999999999999864
No 111
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.87 E-value=7.8e-21 Score=135.10 Aligned_cols=125 Identities=28% Similarity=0.527 Sum_probs=104.9
Q ss_pred eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 11 QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 11 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
..+.+++..+.+.+||++|++.+......+++++|+++++||+++.++|+.+. .|+..+... .++.|+++||||+|+.
T Consensus 40 ~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~-~~~~piilvgnK~Dl~ 118 (187)
T cd04129 40 TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRY-CPNVPVILVGLKKDLR 118 (187)
T ss_pred EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhh
Confidence 34566788889999999999988887778899999999999999999999986 588888655 3469999999999985
Q ss_pred C----------CcccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 90 S----------KKAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 90 ~----------~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
. .+.+..+++..+++.++. +++++||++|.|++++|+++.+.+....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 119 QDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLVR 176 (187)
T ss_pred hCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhccc
Confidence 3 234556777788888884 8999999999999999999998775443
No 112
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.87 E-value=2.7e-21 Score=136.20 Aligned_cols=128 Identities=27% Similarity=0.423 Sum_probs=106.7
Q ss_pred ccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEE
Q psy2646 3 LLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLL 81 (168)
Q Consensus 3 ~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiv 81 (168)
.+.||.+.....+...++.+.+||.+|+..++.+|+.|+.++|++|||+|.++.+.+.+....+..+... ...+.|+++
T Consensus 41 ~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLI 120 (175)
T PF00025_consen 41 ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILI 120 (175)
T ss_dssp EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEE
T ss_pred ccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEE
Confidence 4689999999998888899999999999999999999999999999999999998899888877777443 245799999
Q ss_pred EEecCCCCCCcccCHHHHHHHHH------hcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 82 VGNKNDQTSKKAVDYQVAKEYAD------HLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 82 v~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
++||+|+++. +..++...... ...+.++.+||.+|+|+.++|+||..++
T Consensus 121 l~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 121 LANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 9999998763 44444443322 2346799999999999999999999764
No 113
>KOG0073|consensus
Probab=99.87 E-value=4.8e-21 Score=129.17 Aligned_cols=132 Identities=23% Similarity=0.330 Sum_probs=111.0
Q ss_pred cccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH-HHhcCCCCcEE
Q psy2646 2 RLLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI-DRYACDNVNKL 80 (168)
Q Consensus 2 ~~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~pii 80 (168)
.++.||.+...-++..+.+++.+||++|+..++++|+.|+..+||+|+|||.+++..+++....+..+ .+....+.|++
T Consensus 42 ~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~L 121 (185)
T KOG0073|consen 42 DTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLL 121 (185)
T ss_pred cccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceE
Confidence 45789999999999999999999999999999999999999999999999999999988887766665 22224468999
Q ss_pred EEEecCCCCCCcccCHHH------HHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 81 LVGNKNDQTSKKAVDYQV------AKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 81 vv~nK~Dl~~~~~v~~~~------~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
|++||+|+++. +..+. ...+++.+.++++-|||.+|+++.+.++|+.+.+..+
T Consensus 122 vlank~dl~~~--l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 122 VLANKQDLPGA--LSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred EEEecCcCccc--cCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 99999999742 22222 2344566779999999999999999999999998874
No 114
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.87 E-value=8.6e-21 Score=130.80 Aligned_cols=122 Identities=34% Similarity=0.522 Sum_probs=107.9
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC-DNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~Dl 88 (168)
.....+++..+.+++||+||++.+..++..+++.+|++++|||+++++++..+..|...+..... ...|+++++||+|+
T Consensus 37 ~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 116 (160)
T cd00876 37 RKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDL 116 (160)
T ss_pred EEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcc
Confidence 45556677789999999999999988899999999999999999999999999999988866543 57999999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
...+.+..+++..+...++++++++||+++.|++++|+++.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 117 ENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred cccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 8766777788888888888999999999999999999999875
No 115
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.87 E-value=7e-22 Score=136.68 Aligned_cols=125 Identities=20% Similarity=0.280 Sum_probs=95.6
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH-hcCCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDR-YACDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piivv 82 (168)
+.||++.....+++.++.+++|||||++++..+|..+++++|++|+|+|++++.++.....++..+.. ....+.|++++
T Consensus 27 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv 106 (158)
T cd04151 27 TIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVF 106 (158)
T ss_pred cCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEE
Confidence 45777766666777778999999999999999999999999999999999998888776666655422 22347899999
Q ss_pred EecCCCCCCcccCHHHHHH-HH----HhcCCCEEEEeccCCCCHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKE-YA----DHLKIPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
+||+|+.+.. ...+... +. ...+.+++++||++|.|++++|+++++
T Consensus 107 ~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 107 ANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 9999986532 1222211 11 112357999999999999999999874
No 116
>KOG0075|consensus
Probab=99.87 E-value=8.9e-22 Score=130.56 Aligned_cols=129 Identities=22% Similarity=0.370 Sum_probs=105.7
Q ss_pred ccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH-HHhcCCCCcEEE
Q psy2646 3 LLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI-DRYACDNVNKLL 81 (168)
Q Consensus 3 ~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~piiv 81 (168)
-++||+|.+...++.+.+.+.+||.||+.+|+.+|+.|.+.++++++|+|+.+++.....+.-+..+ .+....+.|++|
T Consensus 48 dmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LV 127 (186)
T KOG0075|consen 48 DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLV 127 (186)
T ss_pred hhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEE
Confidence 3689999999999999999999999999999999999999999999999999998877776655555 444467899999
Q ss_pred EEecCCCCCCcccCHHHHHHH-----HHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 82 VGNKNDQTSKKAVDYQVAKEY-----ADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 82 v~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+|||.|+++. +....+..- ..+..+.+|.+|+++..|++.+.+|++++-.
T Consensus 128 LGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 128 LGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred ecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 9999998763 332222111 1223367999999999999999999998754
No 117
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.86 E-value=6.2e-21 Score=134.13 Aligned_cols=125 Identities=19% Similarity=0.242 Sum_probs=98.6
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv 82 (168)
+.||++.....+..+.+.+.+||+||++++...|..+++++|++++|||+++++++.....++..+.... ..+.|++++
T Consensus 43 ~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv 122 (174)
T cd04153 43 TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVL 122 (174)
T ss_pred cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEE
Confidence 4677777666666667899999999999999999999999999999999999999988877777664332 346899999
Q ss_pred EecCCCCCCcccCHHHH-HHHH----HhcCCCEEEEeccCCCCHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVA-KEYA----DHLKIPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
+||+|+... +..++. ..+. +..+++++++||++|.|++++|++|.+
T Consensus 123 ~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 123 ANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 999998652 233332 2221 234567999999999999999999864
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.86 E-value=6.1e-21 Score=132.83 Aligned_cols=125 Identities=29% Similarity=0.397 Sum_probs=100.1
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv 82 (168)
+.||++.....+...+..+.+|||||++.+..++..+++++|++++|||+++++++.....|+..+.... ..+.|++++
T Consensus 34 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 113 (167)
T cd04160 34 ITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLIL 113 (167)
T ss_pred cCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEE
Confidence 4667776666666667899999999999999999999999999999999999988998888888775432 347999999
Q ss_pred EecCCCCCCcccCHHHHHHHHHh-------cCCCEEEEeccCCCCHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYADH-------LKIPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
+||+|+... ....+...+.+. .+++++++||++|.|++++++||.+
T Consensus 114 ~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 114 ANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 999998653 333444444322 2468999999999999999999864
No 119
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.85 E-value=1.6e-20 Score=133.51 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=101.0
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv 82 (168)
+.||++.....+....+.+.+||+||++++...|..+++++|++++|+|+++.+++.....|+..+.... ..+.|++++
T Consensus 47 ~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv 126 (190)
T cd00879 47 HVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLIL 126 (190)
T ss_pred cCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEE
Confidence 5667776665665556789999999999998899999999999999999999989988888888775432 346999999
Q ss_pred EecCCCCCCcccCHHHHHHHHHh----------------cCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYADH----------------LKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~~----------------~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
+||+|+.. .+..++...+... ..++++++||++|.|++++|+|+...
T Consensus 127 ~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 127 GNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 99999864 4555666555532 12468999999999999999999865
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.85 E-value=1.4e-20 Score=129.95 Aligned_cols=125 Identities=22% Similarity=0.324 Sum_probs=100.2
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv 82 (168)
+.||.+.....+....+.+.+||+||++.+...+..+++++|++++|||+++++++..+..|+..+.... ..+.|++++
T Consensus 27 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv 106 (158)
T cd00878 27 TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIF 106 (158)
T ss_pred CCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEE
Confidence 5667776666666667899999999999999999999999999999999999999999988888775432 357999999
Q ss_pred EecCCCCCCcccCHHHHHHHHH-----hcCCCEEEEeccCCCCHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYAD-----HLKIPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
+||+|+.... ..++...... ...++++++||++|.|++++|++|..
T Consensus 107 ~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 107 ANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred eeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 9999987543 2233333222 23468999999999999999999874
No 121
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.84 E-value=1.2e-19 Score=126.62 Aligned_cols=120 Identities=24% Similarity=0.483 Sum_probs=99.9
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
.....+++..+.+++||+||++++..+...+++.+|++++|||++++.+|.... .|+..+... ..+.|+++|+||+|+
T Consensus 38 ~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl 116 (171)
T cd00157 38 SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHY-CPNVPIILVGTKIDL 116 (171)
T ss_pred EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEccHHh
Confidence 445566788899999999999998888888899999999999999999988765 477766554 347999999999998
Q ss_pred CCCc-----------ccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHH
Q psy2646 89 TSKK-----------AVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 89 ~~~~-----------~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
.... .+...++..+...++. +++++||++|.|++++|+++++
T Consensus 117 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 117 RDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 7543 2355677778888886 9999999999999999999875
No 122
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=7.8e-20 Score=127.49 Aligned_cols=121 Identities=24% Similarity=0.298 Sum_probs=95.7
Q ss_pred eeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 13 KKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 13 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
..+++..+.+.+|||||.+.+...+..+++.+|++++|||++++++++.+. .|+..+.... .+.|+++++||+|+.+.
T Consensus 40 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 40 ADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDG 118 (166)
T ss_pred eeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccc
Confidence 345678899999999999988877788899999999999999999999975 6777776553 47999999999999764
Q ss_pred cccC--HHHHHHHHHhcC--CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 92 KAVD--YQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 92 ~~v~--~~~~~~~~~~~~--~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
.... .+++..+...++ .+++++||+++.|++++|+.+...+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 119 SSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred cchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 4321 233333333332 379999999999999999999887653
No 123
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.84 E-value=4.9e-20 Score=130.70 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=99.1
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv 82 (168)
+.||.+.....+..+++++.+||+||++++..+|..++.++|++++|+|+++++++.....++..+... ...+.|++++
T Consensus 45 ~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv 124 (184)
T smart00178 45 HQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLIL 124 (184)
T ss_pred cCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEE
Confidence 456777666666556688999999999999999999999999999999999999998888877776432 1347899999
Q ss_pred EecCCCCCCcccCHHHHHHHHHh------------cCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYADH------------LKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~~------------~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
+||+|+.. .++.+++...... ....++++||+++.|++++++||..+
T Consensus 125 ~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 125 GNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 99999864 3444444433211 12469999999999999999999764
No 124
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.84 E-value=3.5e-20 Score=128.13 Aligned_cols=124 Identities=21% Similarity=0.361 Sum_probs=94.7
Q ss_pred ccccceeeeeeC-CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEE
Q psy2646 5 LPYQTLQNKKEE-RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82 (168)
Q Consensus 5 ~~t~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv 82 (168)
.||++.....+. +..+.+.+||+||++++..+|..+++++|++|+|+|++++.++..+..|+..+.... ..+.|++++
T Consensus 28 ~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 107 (160)
T cd04156 28 IPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLL 107 (160)
T ss_pred cCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEE
Confidence 566654443343 345789999999999999999999999999999999999999999888888774432 247999999
Q ss_pred EecCCCCCCcccCHHHHHHH------HHhcCCCEEEEeccCCCCHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEY------ADHLKIPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~------~~~~~~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
+||+|+... ....+.... +...+++++++||++|.|++++|+++.+
T Consensus 108 ~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 108 ANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 999998642 222222221 2223457999999999999999999864
No 125
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.83 E-value=4.4e-19 Score=127.36 Aligned_cols=116 Identities=21% Similarity=0.336 Sum_probs=92.9
Q ss_pred cccccc----eeeeeeC-----CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-
Q psy2646 4 LLPYQT----LQNKKEE-----RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA- 73 (168)
Q Consensus 4 ~~~t~~----~~~~~~~-----~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~- 73 (168)
+.||++ .+.+.++ ++.+.++||||+|+++|..++..+++++|++|+|||+++++||+.+..|+..+....
T Consensus 29 ~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~ 108 (202)
T cd04102 29 PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDT 108 (202)
T ss_pred CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhc
Confidence 457776 3344443 567899999999999999999999999999999999999999999999999985531
Q ss_pred ------------------CCCCcEEEEEecCCCCCCcccCHHH----HHHHHHhcCCCEEEEeccCCC
Q psy2646 74 ------------------CDNVNKLLVGNKNDQTSKKAVDYQV----AKEYADHLKIPFLETSAKNGA 119 (168)
Q Consensus 74 ------------------~~~~piivv~nK~Dl~~~~~v~~~~----~~~~~~~~~~~~~~vSa~~~~ 119 (168)
..+.|+++||||.|+..++.+.... ...++++.+++.++.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 109 FPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred cccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence 2468999999999997655444432 234677889999999887653
No 126
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.83 E-value=8.3e-19 Score=127.26 Aligned_cols=130 Identities=28% Similarity=0.526 Sum_probs=107.5
Q ss_pred cccccceeee----eeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE
Q psy2646 4 LLPYQTLQNK----KEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK 79 (168)
Q Consensus 4 ~~~t~~~~~~----~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi 79 (168)
+.||++.... ..+++.+.+.+|||+|+++|..++..++.+++++++|||+++..+|..+..|+..+... ..+.|+
T Consensus 38 ~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~i 116 (215)
T PTZ00132 38 YIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV-CENIPI 116 (215)
T ss_pred CCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCE
Confidence 4566664443 34778899999999999999999999999999999999999999999999999998765 357899
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
++++||+|+... .+... ...+....++.++++||++|.|++++|.++++.+....
T Consensus 117 ~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 117 VLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred EEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhcc
Confidence 999999998643 33322 33566677889999999999999999999999887643
No 127
>KOG0071|consensus
Probab=99.82 E-value=2.6e-20 Score=122.72 Aligned_cols=129 Identities=18% Similarity=0.316 Sum_probs=108.1
Q ss_pred cccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEE
Q psy2646 2 RLLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKL 80 (168)
Q Consensus 2 ~~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pii 80 (168)
.+++||+|....++..+++.|.+||.+|+++.+++|++|+.+..++|||+|..+.+.+++++.-+..+.... ....|++
T Consensus 43 ~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~L 122 (180)
T KOG0071|consen 43 VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIIL 122 (180)
T ss_pred cccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEE
Confidence 368999999999999999999999999999999999999999999999999999988998887666663322 3478999
Q ss_pred EEEecCCCCCCcccCHHHHHHHH-----HhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 81 LVGNKNDQTSKKAVDYQVAKEYA-----DHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 81 vv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
|.+||+|++.. ...+++..+. +...+.+.++||.+|.|+.+.|.|+...+
T Consensus 123 vlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 123 ILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred EEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 99999999864 3445554433 23346788999999999999999998654
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.82 E-value=2.9e-19 Score=125.76 Aligned_cols=111 Identities=23% Similarity=0.287 Sum_probs=87.7
Q ss_pred CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC
Q psy2646 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD 95 (168)
Q Consensus 16 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~ 95 (168)
+++.+.+.||||||+++|...+..+++++|++|+|||+++..++.....|.... ..+.|+++++||+|+.+.. .
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~ 136 (179)
T cd01890 63 DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--P 136 (179)
T ss_pred CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--H
Confidence 667889999999999999999999999999999999999876666665554332 2368999999999986432 1
Q ss_pred HHHHHHHHHhcCC---CEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 96 YQVAKEYADHLKI---PFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 96 ~~~~~~~~~~~~~---~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
.....++++.+++ +++++||++|.|++++|+++...+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 137 ERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 2233455555565 489999999999999999998764
No 129
>KOG4252|consensus
Probab=99.81 E-value=4.5e-21 Score=131.32 Aligned_cols=126 Identities=28% Similarity=0.478 Sum_probs=113.8
Q ss_pred eeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q psy2646 13 KKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKK 92 (168)
Q Consensus 13 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 92 (168)
+.++++.+.+++|||+|+++|..+...||++|.+.++||+.+|..||+.+..|++.+... ...+|.++|-||+|+.+..
T Consensus 62 i~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e-~~~IPtV~vqNKIDlveds 140 (246)
T KOG4252|consen 62 IKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE-TERIPTVFVQNKIDLVEDS 140 (246)
T ss_pred HHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHH-hccCCeEEeeccchhhHhh
Confidence 344566678899999999999999999999999999999999999999999999999665 4579999999999999888
Q ss_pred ccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 93 AVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 93 ~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
.+...+.+.+++.+.+.++.+|++...|+.++|..|+..+.++...+
T Consensus 141 ~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq~ 187 (246)
T KOG4252|consen 141 QMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQS 187 (246)
T ss_pred hcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999888766553
No 130
>KOG0072|consensus
Probab=99.81 E-value=8.8e-20 Score=120.72 Aligned_cols=131 Identities=18% Similarity=0.236 Sum_probs=104.7
Q ss_pred ccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH-HHhcCCCCcEEE
Q psy2646 3 LLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI-DRYACDNVNKLL 81 (168)
Q Consensus 3 ~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~piiv 81 (168)
++.||++.....+..++.++++||.+|+-..+++|+.|+.+.|++|+|+|.+|.+...-....+..+ .+....+..++|
T Consensus 45 ttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv 124 (182)
T KOG0072|consen 45 TTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLV 124 (182)
T ss_pred ccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEE
Confidence 5789999999999999999999999999999999999999999999999999987766665544444 333345788999
Q ss_pred EEecCCCCCCcccCHHHHH-----HHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 82 VGNKNDQTSKKAVDYQVAK-----EYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 82 v~nK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
++||+|.+.... ..+.. ...++.-+.+|++||.+|+|++++.+|+.+.+..+
T Consensus 125 ~anKqD~~~~~t--~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 125 FANKQDYSGALT--RSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred Eeccccchhhhh--HHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 999999876422 12221 11223337899999999999999999999887653
No 131
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.80 E-value=4e-19 Score=121.90 Aligned_cols=126 Identities=23% Similarity=0.379 Sum_probs=98.1
Q ss_pred ccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEE
Q psy2646 3 LLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLL 81 (168)
Q Consensus 3 ~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiv 81 (168)
.+.||++.....++...+.+.+||+||++.+..++..+++++|++++|+|+++.+++.....|+..+... ...+.|+++
T Consensus 27 ~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ii 106 (159)
T cd04159 27 DTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLV 106 (159)
T ss_pred CccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEE
Confidence 3577887776666656689999999999999999999999999999999999998888887777776432 134789999
Q ss_pred EEecCCCCCCcccCHHHHHHHH-----HhcCCCEEEEeccCCCCHHHHHHHHHH
Q psy2646 82 VGNKNDQTSKKAVDYQVAKEYA-----DHLKIPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 82 v~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
++||+|+.+.... .+..... ...+++++++|++++.|++++++++.+
T Consensus 107 v~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 107 LGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 9999998654322 2221111 122367899999999999999999874
No 132
>KOG0076|consensus
Probab=99.79 E-value=2.9e-19 Score=121.74 Aligned_cols=133 Identities=28% Similarity=0.380 Sum_probs=109.0
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv 82 (168)
.+||++..+.+++=....+.|||.+|++..+++|..||..++++|+++|+++++.|+.....+..+..+. ..++|+++.
T Consensus 53 i~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~l 132 (197)
T KOG0076|consen 53 ITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVL 132 (197)
T ss_pred eecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhh
Confidence 5789999988888668899999999999999999999999999999999999999998887777774443 468999999
Q ss_pred EecCCCCCCcccCHHH-HHHHHHh---cCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 83 GNKNDQTSKKAVDYQV-AKEYADH---LKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~-~~~~~~~---~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
+||.|+.+...+..-. ....++. ...++.+|||.+|.|+++...|++..+.++.
T Consensus 133 ankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn~ 190 (197)
T KOG0076|consen 133 ANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKNV 190 (197)
T ss_pred cchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhcc
Confidence 9999998754332111 1122222 2478999999999999999999999888773
No 133
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.78 E-value=6.9e-18 Score=117.51 Aligned_cols=122 Identities=14% Similarity=0.083 Sum_probs=86.3
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccc----------hhhhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTIT----------SSYYRGAHGIIVVYDCTDQET--FNNLKQWLEEIDRYAC 74 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~----------~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~ 74 (168)
|.......++.+.+.++||||||+.... .+ ......+|++|+|+|+++..+ ++....|+..+... .
T Consensus 34 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-~ 111 (168)
T cd01897 34 TKSLFVGHFDYKYLRWQVIDTPGLLDRP-LEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL-F 111 (168)
T ss_pred ccceeEEEEccCceEEEEEECCCcCCcc-ccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhh-c
Confidence 4444444455566899999999984311 11 111233689999999998754 35566777777544 2
Q ss_pred CCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 75 DNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 75 ~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
.+.|+++++||+|+.....+.. ...+....+.+++++||++|.|++++|+++.+.+
T Consensus 112 ~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 112 KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 4789999999999976544332 4445555568999999999999999999998875
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.78 E-value=6.1e-18 Score=118.40 Aligned_cols=122 Identities=21% Similarity=0.305 Sum_probs=93.6
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLLV 82 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv 82 (168)
+.||.+.....++..+..+.+||+||+..+...+..+++++|++++|+|+++..++.....++..+... ...+.|++++
T Consensus 42 ~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 121 (173)
T cd04155 42 ITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVF 121 (173)
T ss_pred cCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEE
Confidence 557777655555555678999999999988888899999999999999999988888877777666332 2346999999
Q ss_pred EecCCCCCCcccCHHHHHHHHHhcC--------CCEEEEeccCCCCHHHHHHHHHH
Q psy2646 83 GNKNDQTSKKAVDYQVAKEYADHLK--------IPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
+||+|+..... .++ +.+.++ .+++++||++|.|++++|+|+.+
T Consensus 122 ~nK~D~~~~~~--~~~---i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 122 ANKQDLATAAP--AEE---IAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EECCCCccCCC--HHH---HHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 99999865322 122 222222 24789999999999999999975
No 135
>KOG3883|consensus
Probab=99.77 E-value=1.7e-17 Score=111.04 Aligned_cols=126 Identities=25% Similarity=0.423 Sum_probs=110.2
Q ss_pred CeEEEEEEEeCCCchhh-cccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCCCCCCccc
Q psy2646 17 RTRTLIVIWDTAGQERF-RTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKNDQTSKKAV 94 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~v 94 (168)
+-.-++.|+||.|...+ ..+-+.|+.-+|++++|||..+++||+.+..+...|.... ...+||+|++||+|+.+++.+
T Consensus 57 garE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v 136 (198)
T KOG3883|consen 57 GAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREV 136 (198)
T ss_pred ChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhc
Confidence 44458999999998877 5677889999999999999999999999988888887665 457999999999999988899
Q ss_pred CHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCCCC
Q psy2646 95 DYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKP 142 (168)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~~~ 142 (168)
..+-+..+++.-.+..++++|.+...+-+.|..+...+..-..++.+|
T Consensus 137 d~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~pqskS~Fp 184 (198)
T KOG3883|consen 137 DMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQPQSKSTFP 184 (198)
T ss_pred CHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCCcccccCc
Confidence 989999999988999999999999999999999988877666666555
No 136
>PLN00023 GTP-binding protein; Provisional
Probab=99.76 E-value=1.8e-17 Score=125.38 Aligned_cols=90 Identities=24% Similarity=0.504 Sum_probs=78.1
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC------------CCCcEEEEEec
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC------------DNVNKLLVGNK 85 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piivv~nK 85 (168)
+.+.++||||+|+++|..++..|+++++++|+|||+++..+|+.+..|+..+..... .++|++|||||
T Consensus 81 k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK 160 (334)
T PLN00023 81 RDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNK 160 (334)
T ss_pred ceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEEC
Confidence 568899999999999999999999999999999999999999999999999976521 25899999999
Q ss_pred CCCCCCc---c---cCHHHHHHHHHhcC
Q psy2646 86 NDQTSKK---A---VDYQVAKEYADHLK 107 (168)
Q Consensus 86 ~Dl~~~~---~---v~~~~~~~~~~~~~ 107 (168)
+||...+ . +..+++.++++.++
T Consensus 161 ~DL~~~~~~r~~s~~~~e~a~~~A~~~g 188 (334)
T PLN00023 161 ADIAPKEGTRGSSGNLVDAARQWVEKQG 188 (334)
T ss_pred ccccccccccccccccHHHHHHHHHHcC
Confidence 9996542 2 35688889998877
No 137
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.76 E-value=1.6e-17 Score=115.79 Aligned_cols=111 Identities=17% Similarity=0.231 Sum_probs=84.2
Q ss_pred EEEEEEeCCCch----hhcccchhhh---cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhc--CCCCcEEEEEecCCCC
Q psy2646 20 TLIVIWDTAGQE----RFRTITSSYY---RGAHGIIVVYDCTDQ-ETFNNLKQWLEEIDRYA--CDNVNKLLVGNKNDQT 89 (168)
Q Consensus 20 ~~l~l~Dt~G~~----~~~~~~~~~~---~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~ 89 (168)
..+.+|||||+. .+..+...++ ..+|++++|+|++++ ++++.+..|...+.... ....|+++|+||+|+.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 489999999963 2223344444 459999999999998 78998888988886553 1368999999999986
Q ss_pred CCcccCHHHHHHHHHh-cCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADH-LKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~-~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
....+. .....+... .+.+++++||+++.|++++|+++.+.
T Consensus 128 ~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 128 DEEELF-ELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CchhhH-HHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 654432 333344444 36889999999999999999999864
No 138
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=3.1e-17 Score=125.94 Aligned_cols=117 Identities=16% Similarity=0.154 Sum_probs=89.2
Q ss_pred eEEEEEEEeCCCchhh----cccch---hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEecCCC
Q psy2646 18 TRTLIVIWDTAGQERF----RTITS---SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC--DNVNKLLVGNKNDQ 88 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~----~~~~~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl 88 (168)
+...+.+||+||..+- ..+.. .+++.++++|+|||+++.++++.+..|...+..+.. .+.|+++|+||+|+
T Consensus 204 ~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL 283 (335)
T PRK12299 204 DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDL 283 (335)
T ss_pred CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECccc
Confidence 3456899999997421 12222 345679999999999988789999999988866532 36899999999999
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
.....+.......+....+.+++++||+++.|++++++++...+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 284 LDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7654443334444555567899999999999999999999988765
No 139
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.73 E-value=8.5e-17 Score=110.71 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=81.0
Q ss_pred EEEEEEEeCCCchhhccc------chhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 19 RTLIVIWDTAGQERFRTI------TSSYYR--GAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~------~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
+..+.+|||||++.+... +..++. ++|++++|+|+++++.. ..|...+... +.|+++++||+|+..
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~~---~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLEL---GLPVVVALNMIDEAE 115 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHHc---CCCEEEEEehhhhcc
Confidence 357899999999876643 455664 99999999999986442 2344444333 689999999999976
Q ss_pred CcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 91 KKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 91 ~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
...+.. ....+...++.+++++||.++.|+.++++++...+
T Consensus 116 ~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 116 KRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred cccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 544432 24466677789999999999999999999998763
No 140
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.73 E-value=7.5e-17 Score=111.57 Aligned_cols=106 Identities=18% Similarity=0.183 Sum_probs=75.3
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc-
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTD---QETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAV- 94 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v- 94 (168)
...+.+|||||+++|......+++++|++++|+|+++ .++.+.+ ..+... ...|+++++||+|+.+....
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~----~~~~~~--~~~~~ilv~NK~Dl~~~~~~~ 123 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHL----EILELL--GIKRGLVVLTKADLVDEDWLE 123 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHH----HHHHHh--CCCcEEEEEECccccCHHHHH
Confidence 4689999999999887666677889999999999987 3333322 222222 12489999999999754211
Q ss_pred -CHHHHHHHHHh---cCCCEEEEeccCCCCHHHHHHHHHH
Q psy2646 95 -DYQVAKEYADH---LKIPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 95 -~~~~~~~~~~~---~~~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
...+..+..+. .+.+++++||+++.|++++|+.+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 124 LVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 12233333333 3579999999999999999998753
No 141
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.71 E-value=9.2e-17 Score=114.78 Aligned_cols=125 Identities=20% Similarity=0.193 Sum_probs=87.4
Q ss_pred cceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 8 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
...+...++++.+.+.+|||||+++|...+..+++++|++++|||+++.. +.....++..+.. .+.|+++++||+|
T Consensus 53 ~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~D 128 (194)
T cd01891 53 ILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKID 128 (194)
T ss_pred cccceeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCC
Confidence 34455566777889999999999999999999999999999999998742 2333334444333 2689999999999
Q ss_pred CCCCcc-cCHHHHHHHHH-------hcCCCEEEEeccCCCCHHH------HHHHHHHHHHHHh
Q psy2646 88 QTSKKA-VDYQVAKEYAD-------HLKIPFLETSAKNGANVEQ------AFLTMATEIKKRV 136 (168)
Q Consensus 88 l~~~~~-v~~~~~~~~~~-------~~~~~~~~vSa~~~~~i~~------i~~~l~~~~~~~~ 136 (168)
+..... ...++...+.. ..+++++++||++|.|+.+ -+.+|...+....
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~ 191 (194)
T cd01891 129 RPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHV 191 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccccccchhhHHHHHHHHHhcC
Confidence 964322 11233333332 2367999999999988743 3556666665543
No 142
>KOG4423|consensus
Probab=99.70 E-value=1e-17 Score=115.42 Aligned_cols=150 Identities=27% Similarity=0.380 Sum_probs=117.6
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----cCCCCcEEEEEecCCCCCCccc
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY----ACDNVNKLLVGNKNDQTSKKAV 94 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl~~~~~v 94 (168)
.+++++||++||++|..|..-|++.+++..+|||++++-+|+.+..|.+.+..- .+...|+++++||+|.......
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~ 153 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN 153 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhh
Confidence 367899999999999999999999999999999999999999999999998321 1457899999999998643221
Q ss_pred -CHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHHHHhccCCCCCCchhhhhhccCCCCCCCCCCCCCCC
Q psy2646 95 -DYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPSSESDAKKLNLNSGKPVDAPRSGGCC 168 (168)
Q Consensus 95 -~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 168 (168)
.......+.+++|+ ..+++|++.+.++.|+-..++.++..+.....+.+.-.....+....+....+..-..||
T Consensus 154 ~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~~l~~~~~s~~~g~~~~~c 229 (229)
T KOG4423|consen 154 EATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVNDEQPIKSSAVDGDKINLRLMQPSEAAGRVKSMC 229 (229)
T ss_pred hhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhccCCcccccccccccCccccCcchhhhhhcccC
Confidence 13455678888884 799999999999999999999999988766666666555555544444444444444555
No 143
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.70 E-value=1.9e-16 Score=113.89 Aligned_cols=105 Identities=19% Similarity=0.237 Sum_probs=79.5
Q ss_pred EEEEEeCCCchh---------hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 21 LIVIWDTAGQER---------FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 21 ~l~l~Dt~G~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
.+.||||||..+ +...+ ..+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+.
T Consensus 90 ~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 90 EVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred eEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 799999999732 11111 23678999999999999888877777777665544446899999999998654
Q ss_pred cccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 92 KAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 92 ~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
.... ......+.+++++||+++.|+.++++++...
T Consensus 169 ~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 169 EELE-----ERLEAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred HHHH-----HHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 3321 3344456789999999999999999999865
No 144
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.70 E-value=1.9e-15 Score=102.02 Aligned_cols=119 Identities=45% Similarity=0.762 Sum_probs=91.9
Q ss_pred eeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH-HHhcCCCCcEEEEEecCCCC
Q psy2646 11 QNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI-DRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 11 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~piivv~nK~Dl~ 89 (168)
...........+.+||+||...+...+..+++.+|++++|+|++++.++.....|.... ......+.|+++++||+|+.
T Consensus 36 ~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~ 115 (157)
T cd00882 36 KTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP 115 (157)
T ss_pred EEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence 33344456889999999999988888888999999999999999998888888773222 22335579999999999987
Q ss_pred CCcccCHHH-HHHHHHhcCCCEEEEeccCCCCHHHHHHHHH
Q psy2646 90 SKKAVDYQV-AKEYADHLKIPFLETSAKNGANVEQAFLTMA 129 (168)
Q Consensus 90 ~~~~v~~~~-~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~ 129 (168)
......... ........+.+++++|+.++.|++++++++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 116 EERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred cccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 544332222 3334455568999999999999999999985
No 145
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.69 E-value=4.2e-16 Score=127.69 Aligned_cols=111 Identities=19% Similarity=0.268 Sum_probs=87.3
Q ss_pred CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC
Q psy2646 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD 95 (168)
Q Consensus 16 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~ 95 (168)
++..+.+.||||||+.+|...+..+++.+|++|+|||+++..+......|...+. .+.|+++++||+|+.... .
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~ 139 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--P 139 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--H
Confidence 5667899999999999999989999999999999999998766666666554432 268999999999986432 1
Q ss_pred HHHHHHHHHhcCC---CEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 96 YQVAKEYADHLKI---PFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 96 ~~~~~~~~~~~~~---~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
.....++.+.+++ +++++||++|.|++++|+++.+.+
T Consensus 140 ~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 140 ERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred HHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 2223345555554 489999999999999999998765
No 146
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.69 E-value=2.1e-16 Score=107.32 Aligned_cols=98 Identities=20% Similarity=0.155 Sum_probs=74.3
Q ss_pred EEEeCCCch-----hhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHH
Q psy2646 23 VIWDTAGQE-----RFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQ 97 (168)
Q Consensus 23 ~l~Dt~G~~-----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~ 97 (168)
.+|||||+. .|..+.. .++++|++++|||++++.++.. ..|...+ ..|+++++||+|+.+. ....+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~ 108 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIE 108 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHH
Confidence 689999983 3343333 5889999999999999988755 2343322 2499999999998653 34455
Q ss_pred HHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHH
Q psy2646 98 VAKEYADHLKI-PFLETSAKNGANVEQAFLTMA 129 (168)
Q Consensus 98 ~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~ 129 (168)
++.++++..+. +++++||+++.|++++|+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 109 RAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 66677777765 899999999999999999874
No 147
>KOG1673|consensus
Probab=99.69 E-value=6e-16 Score=103.92 Aligned_cols=123 Identities=21% Similarity=0.380 Sum_probs=104.3
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
-+.+.+.+..+.+.+||.+|++++..+.+..-+++-+++|+||++.+.++..+..|+.+........+| |++|+|.|+.
T Consensus 59 dkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~f 137 (205)
T KOG1673|consen 59 DKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLF 137 (205)
T ss_pred eeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhh
Confidence 456677888899999999999999999999999999999999999999999999999999777666777 7889999964
Q ss_pred CC------cccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 90 SK------KAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 90 ~~------~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
-. ..+ ..+++.+++-++.+.+++|+.+..|+..+|.-+...+.+
T Consensus 138 i~lp~e~Q~~I-~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 138 IDLPPELQETI-SRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFN 187 (205)
T ss_pred hcCCHHHHHHH-HHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhC
Confidence 21 111 134567888889999999999999999999998877764
No 148
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.68 E-value=4.6e-16 Score=108.86 Aligned_cols=113 Identities=18% Similarity=0.187 Sum_probs=82.8
Q ss_pred EEEEEEEeCCCchh----hcccc---hhhhcCCcEEEEEEeCCCh------hhHHHHHHHHHHHHHhcC-------CCCc
Q psy2646 19 RTLIVIWDTAGQER----FRTIT---SSYYRGAHGIIVVYDCTDQ------ETFNNLKQWLEEIDRYAC-------DNVN 78 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~----~~~~~---~~~~~~~d~~i~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p 78 (168)
...+.+|||||... ...++ ..+++++|++++|+|+++. .++.....|...+..... .+.|
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP 122 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC
Confidence 56789999999732 22232 2357789999999999987 577777777777744321 3689
Q ss_pred EEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
+++++||+|+..................+.+++++||+++.|++++++++...
T Consensus 123 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 123 VIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred eEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 99999999997654443332233444456789999999999999999998764
No 149
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.68 E-value=9.6e-16 Score=106.54 Aligned_cols=112 Identities=18% Similarity=0.124 Sum_probs=78.6
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC-H
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD-Y 96 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~-~ 96 (168)
....+.+|||||++.|..++..++..+|++++|+|+++..... ....+..+.. .+.|+++++||+|+....... .
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~ 123 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVK 123 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHH
Confidence 3678999999999999888888999999999999998743211 1112222322 368999999999986432110 0
Q ss_pred HHHHHHHH------hcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 97 QVAKEYAD------HLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 97 ~~~~~~~~------~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
.....+.. ...++++++||.++.|+.++++++..+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 124 NELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred HHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 11111111 11368999999999999999999987653
No 150
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.67 E-value=1.1e-15 Score=117.27 Aligned_cols=112 Identities=17% Similarity=0.242 Sum_probs=84.6
Q ss_pred EEEEEEeCCCchhhc----ccchhh---hcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhc--CCCCcEEEEEecCC
Q psy2646 20 TLIVIWDTAGQERFR----TITSSY---YRGAHGIIVVYDCTDQ---ETFNNLKQWLEEIDRYA--CDNVNKLLVGNKND 87 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~----~~~~~~---~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~--~~~~piivv~nK~D 87 (168)
..++||||||..+.. .+...+ +..++++++|+|+++. ++++.+..|..++..+. ....|+++|+||+|
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D 284 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID 284 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence 678999999975321 233334 4579999999999976 67888888888775542 24689999999999
Q ss_pred CCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 88 QTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 88 l~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+..... ..+....+.+.++.+++++||+++.|++++++++.+.+
T Consensus 285 L~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 285 LLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred CCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 975432 22344456666678999999999999999999998754
No 151
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.66 E-value=3.5e-15 Score=101.78 Aligned_cols=116 Identities=31% Similarity=0.391 Sum_probs=89.5
Q ss_pred eeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 13 KKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ-ETFNNLK-QWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 13 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
+.+++..+.+.+||+||+.++..++..+.+.++++++++|.... .++.... .|...+......+.|+++++||+|+..
T Consensus 43 ~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 43 IEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD 122 (161)
T ss_pred EEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc
Confidence 44556668899999999999999999999999999999999877 6666655 666666554333789999999999965
Q ss_pred CcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHH
Q psy2646 91 KKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMA 129 (168)
Q Consensus 91 ~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~ 129 (168)
.. +.......+......+++++||.++.|+.++|+++-
T Consensus 123 ~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 123 AK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred ch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 43 333333334444457899999999999999999863
No 152
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.64 E-value=3.7e-15 Score=122.31 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=85.9
Q ss_pred CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC
Q psy2646 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD 95 (168)
Q Consensus 16 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~ 95 (168)
+++.+.+.||||||+.+|...+..+++.+|++|+|+|+++.........|.... . .+.|+++++||+|+.... .
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~---~~lpiIvViNKiDl~~a~--~ 143 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E---NDLEIIPVLNKIDLPAAD--P 143 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEEECCCCCccc--H
Confidence 566799999999999999988999999999999999999865555554554332 2 368999999999986432 1
Q ss_pred HHHHHHHHHhcCC---CEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 96 YQVAKEYADHLKI---PFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 96 ~~~~~~~~~~~~~---~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
.....++.+.+++ .++++||++|.|+.++++++.+.+.
T Consensus 144 ~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 144 ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 1222344444554 3899999999999999999987763
No 153
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.64 E-value=8e-15 Score=106.36 Aligned_cols=133 Identities=36% Similarity=0.542 Sum_probs=99.8
Q ss_pred cccccceeeeee----CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhcCCCCc
Q psy2646 4 LLPYQTLQNKKE----ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTD-QETFNNLKQWLEEIDRYACDNVN 78 (168)
Q Consensus 4 ~~~t~~~~~~~~----~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p 78 (168)
+.||++...... .+..+.+.+|||+|+++|+.++..|+.++++++++||..+ ..+++....|...+........|
T Consensus 34 ~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (219)
T COG1100 34 YPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVP 113 (219)
T ss_pred CCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCce
Confidence 445655444333 2336789999999999999999999999999999999998 45566678899888776445699
Q ss_pred EEEEEecCCCCCCcc------------cCHHHHHHHHHhc---CCCEEEEecc--CCCCHHHHHHHHHHHHHHHh
Q psy2646 79 KLLVGNKNDQTSKKA------------VDYQVAKEYADHL---KIPFLETSAK--NGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 79 iivv~nK~Dl~~~~~------------v~~~~~~~~~~~~---~~~~~~vSa~--~~~~i~~i~~~l~~~~~~~~ 136 (168)
+++++||+|+..... ............. ...++++|+. .+.++.++|..+...+.+..
T Consensus 114 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 114 ILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred EEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence 999999999976532 2222222222222 3348999999 99999999999999987654
No 154
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.64 E-value=2.6e-15 Score=116.16 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=82.5
Q ss_pred cccceeeeeeCC-eEEEEEEEeCCCch---------hhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC
Q psy2646 6 PYQTLQNKKEER-TRTLIVIWDTAGQE---------RFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACD 75 (168)
Q Consensus 6 ~t~~~~~~~~~~-~~~~l~l~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 75 (168)
+|.......+.. .+..+.||||+|.. .|...+ ..+.++|++++|+|++++.+++....|...+......
T Consensus 222 tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~ 300 (351)
T TIGR03156 222 ATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAE 300 (351)
T ss_pred cccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccC
Confidence 444444333332 23589999999972 222222 2478999999999999988877776666666554334
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
+.|+++|+||+|+.....+ .... ....+++++||++|.|++++++++...
T Consensus 301 ~~piIlV~NK~Dl~~~~~v-----~~~~-~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 301 DIPQLLVYNKIDLLDEPRI-----ERLE-EGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCCEEEEEEeecCCChHhH-----HHHH-hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 6899999999998643221 1121 123468999999999999999998754
No 155
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.64 E-value=3.3e-15 Score=102.52 Aligned_cols=106 Identities=17% Similarity=0.094 Sum_probs=75.6
Q ss_pred CeEEEEEEEeCCCchhhcc--------cchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 17 RTRTLIVIWDTAGQERFRT--------ITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
..+..+.+|||||...+.. .+..+++.+|++++|+|..+..+.... .+...+... +.|+++++||+|+
T Consensus 42 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~---~~piiiv~nK~D~ 117 (157)
T cd01894 42 WGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRKS---KKPVILVVNKVDN 117 (157)
T ss_pred ECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHhc---CCCEEEEEECccc
Confidence 3446799999999877543 334567899999999999875443332 222333322 5899999999998
Q ss_pred CCCcccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
...... ......++. +++++|++++.|++++|+++.++
T Consensus 118 ~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 118 IKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred CChHHH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 754322 222333555 78999999999999999999875
No 156
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.63 E-value=2.1e-15 Score=108.57 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=75.8
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC--HH
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD--YQ 97 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~--~~ 97 (168)
.++.||||||+++|...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+.+..... .+
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALENYE 160 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHHHH
Confidence 68999999999988777777788899999999998741111111222222222 125799999999986532211 12
Q ss_pred HHHHHHHhc---CCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 98 VAKEYADHL---KIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 98 ~~~~~~~~~---~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
....+...+ +++++++||++|.|++++|+++...+
T Consensus 161 ~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 161 QIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 233333322 57899999999999999999987644
No 157
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=6.1e-15 Score=101.78 Aligned_cols=107 Identities=22% Similarity=0.328 Sum_probs=86.7
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHH
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVA 99 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~ 99 (168)
..+.++|||||+||..+|+.+.+++.++|+++|.+.+..+ ....++..+... ...|++|++||+|+... .+.++.
T Consensus 68 ~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~--~~ip~vVa~NK~DL~~a--~ppe~i 142 (187)
T COG2229 68 TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR--NPIPVVVAINKQDLFDA--LPPEKI 142 (187)
T ss_pred ceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc--cCCCEEEEeeccccCCC--CCHHHH
Confidence 6788999999999999999999999999999999999888 455555555332 13999999999999874 344555
Q ss_pred HHHHHhc--CCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 100 KEYADHL--KIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 100 ~~~~~~~--~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
.++.+.. .+++++++|.++.+..+.++.+...
T Consensus 143 ~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 143 REALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred HHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 5554443 7899999999999999988887754
No 158
>KOG0074|consensus
Probab=99.63 E-value=6.9e-16 Score=102.10 Aligned_cols=128 Identities=26% Similarity=0.339 Sum_probs=99.4
Q ss_pred cccccccceeeeeeCCeE-EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH-HHhcCCCCcE
Q psy2646 2 RLLLPYQTLQNKKEERTR-TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI-DRYACDNVNK 79 (168)
Q Consensus 2 ~~~~~t~~~~~~~~~~~~-~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~pi 79 (168)
|-+.||.++....+...+ +++.+||++|+...+++|..||.+.|++|||+|.+|..-|+++..-+-++ .+.....+|+
T Consensus 43 ~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpv 122 (185)
T KOG0074|consen 43 RHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPV 122 (185)
T ss_pred hhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccce
Confidence 447899999999987554 89999999999999999999999999999999999988888876555544 3344568999
Q ss_pred EEEEecCCCCCCcccCHHHHHH----HHHhcCCCEEEEeccCCCCHHHHHHHHHH
Q psy2646 80 LLVGNKNDQTSKKAVDYQVAKE----YADHLKIPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 80 ivv~nK~Dl~~~~~v~~~~~~~----~~~~~~~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
.+.+||+|+.....++ +.+.. ......+.+-++||.+++|+.+..+|+..
T Consensus 123 lIfankQdlltaa~~e-eia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 123 LIFANKQDLLTAAKVE-EIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred eehhhhhHHHhhcchH-HHHHhcchhhhhhceEEeeeCccccccCccCcchhhhc
Confidence 9999999986543322 11111 11222367889999999999999888864
No 159
>PRK04213 GTP-binding protein; Provisional
Probab=99.62 E-value=2.2e-15 Score=108.11 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=72.8
Q ss_pred EEEEEeCCC-----------chhhcccchhhhc----CCcEEEEEEeCCChhhH-H---------HHHHHHHHHHHhcCC
Q psy2646 21 LIVIWDTAG-----------QERFRTITSSYYR----GAHGIIVVYDCTDQETF-N---------NLKQWLEEIDRYACD 75 (168)
Q Consensus 21 ~l~l~Dt~G-----------~~~~~~~~~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~i~~~~~~ 75 (168)
.+.+||||| +++++.++..++. .++++++|+|.++...+ + ....++..+. ..
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ 129 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---EL 129 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---Hc
Confidence 589999999 5677776666664 35788888888653211 0 0111222222 23
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHHHhcCC---------CEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKI---------PFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~---------~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+.|+++|+||+|+.+.. .+...++.+.+++ +++++||++| |++++|+++.+.+..
T Consensus 130 ~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 130 GIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 68999999999986543 2334455555553 5899999999 999999999987654
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=4.2e-15 Score=119.35 Aligned_cols=120 Identities=18% Similarity=0.147 Sum_probs=81.2
Q ss_pred eeeCCeEEEEEEEeCCCc----------hhhcccc-hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEE
Q psy2646 13 KKEERTRTLIVIWDTAGQ----------ERFRTIT-SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81 (168)
Q Consensus 13 ~~~~~~~~~l~l~Dt~G~----------~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 81 (168)
+.+++. .+.||||||. +.|..+. ..+++++|++|+|+|+++..++.+.. ++..+.. .+.|+++
T Consensus 254 ~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIi 327 (472)
T PRK03003 254 IELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVL 327 (472)
T ss_pred EEECCE--EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEE
Confidence 344454 5679999995 3333332 23678999999999999987777664 3444433 3689999
Q ss_pred EEecCCCCCCcccC--HHHHHH-HHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhcc
Q psy2646 82 VGNKNDQTSKKAVD--YQVAKE-YADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTK 138 (168)
Q Consensus 82 v~nK~Dl~~~~~v~--~~~~~~-~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~ 138 (168)
|+||+|+.+..... ..+... +......+++++||++|.|++++|+.+.+.+.....+
T Consensus 328 V~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~ 387 (472)
T PRK03003 328 AFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTR 387 (472)
T ss_pred EEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 99999996532110 111111 2222236899999999999999999999887654443
No 161
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.61 E-value=1.1e-14 Score=102.91 Aligned_cols=115 Identities=20% Similarity=0.259 Sum_probs=83.7
Q ss_pred eeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc
Q psy2646 14 KEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKA 93 (168)
Q Consensus 14 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 93 (168)
.++.....+.||||||...+...+..+++.+|++++|+|+.+...... ..++..+.. .+.|+++++||+|+.....
T Consensus 56 ~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~ 131 (189)
T cd00881 56 TFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEED 131 (189)
T ss_pred EEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhc
Confidence 334445789999999999888888899999999999999987654332 233333332 3789999999999875322
Q ss_pred cC--HHHHHHHHHh--------------cCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 94 VD--YQVAKEYADH--------------LKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 94 v~--~~~~~~~~~~--------------~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
.. .....+..+. ...+++++||++|.|+++++.++...+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 132 LEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 21 1222223222 357899999999999999999998775
No 162
>KOG0096|consensus
Probab=99.60 E-value=2.1e-15 Score=104.39 Aligned_cols=131 Identities=25% Similarity=0.442 Sum_probs=108.1
Q ss_pred cccccccceeeeee----CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC
Q psy2646 2 RLLLPYQTLQNKKE----ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNV 77 (168)
Q Consensus 2 ~~~~~t~~~~~~~~----~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 77 (168)
+++.||++.....+ +.+.+.+..|||+|++.+..+...|+-.+.+.|++||+...-++..+..|...+.+.+ .++
T Consensus 37 ~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~Ni 115 (216)
T KOG0096|consen 37 KTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENI 115 (216)
T ss_pred ecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCC
Confidence 35778888665555 2345899999999999999999999999999999999999999999999999997774 469
Q ss_pred cEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 78 piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
||++.|||.|..+.+. ..+...+....++.+|++||+++.|.+.-|.|+.+.+...
T Consensus 116 Piv~cGNKvDi~~r~~--k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 116 PIVLCGNKVDIKARKV--KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTGD 171 (216)
T ss_pred Ceeeeccceecccccc--ccccceeeecccceeEEeecccccccccchHHHhhhhcCC
Confidence 9999999999876541 1223345566679999999999999999999999887643
No 163
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.60 E-value=7.6e-15 Score=101.69 Aligned_cols=103 Identities=18% Similarity=0.121 Sum_probs=74.8
Q ss_pred EEeCCCchhhcccc----hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHH
Q psy2646 24 IWDTAGQERFRTIT----SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVA 99 (168)
Q Consensus 24 l~Dt~G~~~~~~~~----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~ 99 (168)
+|||||.......+ ...++++|++++|+|+++..++.. .|+..+ ..+.|+++++||+|+.. ...+..
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~ 111 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADVAAT 111 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccHHHH
Confidence 69999973222111 224789999999999998766532 333332 23579999999999854 234555
Q ss_pred HHHHHhcC--CCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 100 KEYADHLK--IPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 100 ~~~~~~~~--~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
.++++..+ .+++++||+++.|++++|+++.+.+.+.
T Consensus 112 ~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 112 RKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred HHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 66666666 4999999999999999999998776543
No 164
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=3.6e-14 Score=111.83 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=85.5
Q ss_pred EEEEEEEeCCCchh----hcccchhh---hcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhc--CCCCcEEEEEecC
Q psy2646 19 RTLIVIWDTAGQER----FRTITSSY---YRGAHGIIVVYDCTDQ---ETFNNLKQWLEEIDRYA--CDNVNKLLVGNKN 86 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~----~~~~~~~~---~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~--~~~~piivv~nK~ 86 (168)
...+.||||||..+ ...+...| +.+++++|+|+|+++. +++++...|...+..+. ....|++||+||+
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~ 284 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKM 284 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence 46799999999743 22233344 4569999999999864 67777777877776543 2368999999999
Q ss_pred CCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 87 DQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 87 Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
|+... .+....+.+.++.+++++||+++.|++++++++...+....
T Consensus 285 DL~~~----~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 285 DLPEA----EENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred CCcCC----HHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 98432 23445566666688999999999999999999998876543
No 165
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.59 E-value=2.5e-14 Score=113.63 Aligned_cols=112 Identities=21% Similarity=0.175 Sum_probs=77.4
Q ss_pred EEEEEEEeCCCchhhcccc-----------hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 19 RTLIVIWDTAGQERFRTIT-----------SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~-----------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
+..+.+|||||..++.... ..+++.+|++|+|+|++++.+..+.. ++..+.. .+.|+++++||+|
T Consensus 219 ~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~D 294 (429)
T TIGR03594 219 GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWD 294 (429)
T ss_pred CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcc
Confidence 3478999999976543321 23678999999999999876665543 3333333 3689999999999
Q ss_pred CCCCcccCHHHHH-HHHHh----cCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 88 QTSKKAVDYQVAK-EYADH----LKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 88 l~~~~~v~~~~~~-~~~~~----~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+..... ...+.. .+... ..++++++||++|.|++++|+++...+...
T Consensus 295 l~~~~~-~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 295 LVKDEK-TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred cCCCHH-HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 862111 111221 12222 237899999999999999999999876654
No 166
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.59 E-value=1.5e-14 Score=118.56 Aligned_cols=116 Identities=20% Similarity=0.190 Sum_probs=84.2
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhccc------chhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEE
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTI------TSSYYR--GAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~------~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 81 (168)
.+...++.++..+.+|||||+.++... ...++. .+|++++|+|+++.+. ...+..++.+ .+.|+++
T Consensus 31 ~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~---~~~PiII 104 (591)
T TIGR00437 31 KKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE---LGIPMIL 104 (591)
T ss_pred EEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh---cCCCEEE
Confidence 333334334456899999999877654 334443 7899999999987532 2233333333 3689999
Q ss_pred EEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 82 VGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 82 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
++||+|+.+.+.+. .+...+.+..+++++++||++|.|++++++++.+.+
T Consensus 105 VlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 105 ALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred EEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999987655544 345678888899999999999999999999998754
No 167
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.59 E-value=2.4e-14 Score=113.79 Aligned_cols=107 Identities=19% Similarity=0.183 Sum_probs=81.5
Q ss_pred eEEEEEEEeCCCchhhcccc--------hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTIT--------SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
++..+.+|||||+.++...+ ..+++++|++++|||++++.+++.. |+..+.. .+.|+++|+||+|+.
T Consensus 249 ~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 249 NGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLK 323 (442)
T ss_pred CCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCC
Confidence 34567999999986543322 3578899999999999988777664 6555532 368999999999986
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
.. ....+++.++.+++++||++ .|++++|+.+...+.+..
T Consensus 324 ~~------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 324 IN------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFY 363 (442)
T ss_pred Cc------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 43 12345566678899999997 699999999999887654
No 168
>PRK15494 era GTPase Era; Provisional
Probab=99.58 E-value=2.3e-14 Score=110.57 Aligned_cols=121 Identities=17% Similarity=0.259 Sum_probs=80.1
Q ss_pred cccceeeeeeCCeEEEEEEEeCCCchh-hcccch-------hhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCC
Q psy2646 6 PYQTLQNKKEERTRTLIVIWDTAGQER-FRTITS-------SYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYACDN 76 (168)
Q Consensus 6 ~t~~~~~~~~~~~~~~l~l~Dt~G~~~-~~~~~~-------~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~ 76 (168)
+|+......+..++.++.||||||+.+ +..+.. .++.++|++++|+|..+ ++.... .|+..+... +
T Consensus 86 tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~ 160 (339)
T PRK15494 86 TTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---N 160 (339)
T ss_pred CccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---C
Confidence 344433333334446789999999843 322221 24779999999999875 344443 344444433 4
Q ss_pred CcEEEEEecCCCCCCcccCHHHHHHHHHhcC--CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 77 VNKLLVGNKNDQTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 77 ~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
.|+++|+||+|+... . ..+..++....+ ..++++||++|.|++++|+++...+..
T Consensus 161 ~p~IlViNKiDl~~~-~--~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 161 IVPIFLLNKIDIESK-Y--LNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred CCEEEEEEhhcCccc-c--HHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 677899999998643 1 234444544443 579999999999999999999876543
No 169
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.58 E-value=3.9e-14 Score=97.05 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=77.7
Q ss_pred eCCeEEEEEEEeCCCchhhccc--------chhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 15 EERTRTLIVIWDTAGQERFRTI--------TSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 15 ~~~~~~~l~l~Dt~G~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
+...+..+.+|||||..++... ...++.++|++++|+|++++.+......+.. ....|+++++||+
T Consensus 44 ~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~ 117 (157)
T cd04164 44 IDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKS 117 (157)
T ss_pred EEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEch
Confidence 3334567899999997654321 2246779999999999998776665543332 2368999999999
Q ss_pred CCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 87 DQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 87 Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
|+...... .....+.+++++||.++.|++++++++...+
T Consensus 118 D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 118 DLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred hcCCcccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 98764332 3344467999999999999999999988754
No 170
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.58 E-value=2.9e-14 Score=106.93 Aligned_cols=109 Identities=19% Similarity=0.182 Sum_probs=77.1
Q ss_pred EEEEEEEeCCCchhhc-c-------cchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 19 RTLIVIWDTAGQERFR-T-------ITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~-~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
..++.||||||..... . ....+++++|++++|+|+++..+.. ..++..+... +.|+++|+||+|+..
T Consensus 47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~~---~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQNL---KRPVVLTRNKLDNKF 121 (270)
T ss_pred CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHhc---CCCEEEEEECeeCCC
Confidence 3579999999975421 1 1234678999999999999876554 3344444332 689999999999864
Q ss_pred CcccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 91 KKAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 91 ~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
...+ ......+....+. +++++||++|.|++++++++...+.
T Consensus 122 ~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 122 KDKL-LPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred HHHH-HHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 3222 2233344444443 7999999999999999999987763
No 171
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.58 E-value=1.7e-14 Score=114.98 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=78.2
Q ss_pred eEEEEEEEeCCCchhhccc--------chhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTI--------TSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+..+.+|||||.+++... ...+++++|++++|||++++.+++....|.. ..+.|+++|+||+|+.
T Consensus 261 ~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 261 DGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLT 334 (449)
T ss_pred CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhcc
Confidence 3467899999998754432 1236889999999999998877765444333 2368999999999996
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
...... ...+.+++++||++|.|++++++++...+..
T Consensus 335 ~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 335 GEIDLE--------EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred ccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 543221 3345789999999999999999999988764
No 172
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.57 E-value=4.7e-14 Score=115.34 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=80.0
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ---ETFNNLKQWLEEIDRYACDNVNKLLVG 83 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~ 83 (168)
+++...+.+++. ..+.||||||++.|..++...+..+|++|+|||+++. ++.+. +.... ..+.|+++++
T Consensus 123 ~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~----i~~~~---~~~vPiIVvi 194 (587)
T TIGR00487 123 HIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEA----ISHAK---AANVPIIVAI 194 (587)
T ss_pred cceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHH----HHHHH---HcCCCEEEEE
Confidence 334444444332 2789999999999999999899999999999999864 33322 22222 2368999999
Q ss_pred ecCCCCCCcccCHHHHHHHHH-------hcC--CCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 84 NKNDQTSKKAVDYQVAKEYAD-------HLK--IPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 84 nK~Dl~~~~~v~~~~~~~~~~-------~~~--~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
||+|+.+. ..+....... .++ .+++++||++|.|++++|+++...
T Consensus 195 NKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 195 NKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred ECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhhh
Confidence 99998642 2222222222 222 579999999999999999998743
No 173
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=4.3e-14 Score=112.94 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=89.1
Q ss_pred cccceeeeeeCCeEEEEEEEeCCCchhh----ccc---chhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhc-
Q psy2646 6 PYQTLQNKKEERTRTLIVIWDTAGQERF----RTI---TSSYYRGAHGIIVVYDCTDQ----ETFNNLKQWLEEIDRYA- 73 (168)
Q Consensus 6 ~t~~~~~~~~~~~~~~l~l~Dt~G~~~~----~~~---~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~- 73 (168)
.|+......++.....+.||||||.... ..+ .-..+.++|++|+|+|+++. +.+.++..|..++..+.
T Consensus 192 TTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~ 271 (500)
T PRK12296 192 TTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAP 271 (500)
T ss_pred ccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhh
Confidence 4555555556555578999999996321 111 12246789999999999753 35555555555553331
Q ss_pred ----------CCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 74 ----------CDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 74 ----------~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
....|++||+||+|+.....+. +.........+++++++||+++.|+++++.+|...+.....
T Consensus 272 ~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 272 ALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred cccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 2368999999999997543322 22222334457899999999999999999999988876543
No 174
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.57 E-value=3e-14 Score=101.59 Aligned_cols=113 Identities=16% Similarity=0.097 Sum_probs=74.8
Q ss_pred CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc--
Q psy2646 17 RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAV-- 94 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v-- 94 (168)
++...+.+|||||+..+..........+|++++|+|+++.........+. +... .+.|+++++||+|+......
T Consensus 65 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~ 140 (192)
T cd01889 65 EENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERER 140 (192)
T ss_pred ccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHH
Confidence 34678999999998765332223456789999999998754333322222 1121 25799999999998643221
Q ss_pred CHHHHHHH-HH------hcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 95 DYQVAKEY-AD------HLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 95 ~~~~~~~~-~~------~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
..++..+. .. ..+++++++||++|.|++++++++.+++.
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 141 KIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 11222221 11 23578999999999999999999988764
No 175
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.57 E-value=2.8e-14 Score=114.58 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=75.8
Q ss_pred EEEEEEEeCCCchh--------hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 19 RTLIVIWDTAGQER--------FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
+..+.||||||.+. +...+..+++.+|++|+|||+++..++.+ ..+...+.. .+.|+++|+||+|+..
T Consensus 85 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 85 GRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDER 160 (472)
T ss_pred CcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCc
Confidence 35688999999762 33345667899999999999998755433 234444432 3689999999999864
Q ss_pred CcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 91 KKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 91 ~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
.. .+....+....+ ..+++||++|.|++++|++++..+..
T Consensus 161 ~~---~~~~~~~~~g~~-~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 161 GE---ADAAALWSLGLG-EPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred cc---hhhHHHHhcCCC-CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 21 112212222223 35799999999999999999988754
No 176
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.56 E-value=4.3e-14 Score=115.81 Aligned_cols=114 Identities=17% Similarity=0.219 Sum_probs=83.5
Q ss_pred eCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCC
Q psy2646 15 EERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTD---QETFNNLKQWLEEIDRYACDNVN-KLLVGNKNDQTS 90 (168)
Q Consensus 15 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~ 90 (168)
++.....+.|||+||+++|......++.++|++++|+|+++ +++++.+ ..+... +.| +++++||+|+.+
T Consensus 45 ~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl----~il~~l---gi~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 45 FPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHL----AVLDLL---GIPHTIVVITKADRVN 117 (581)
T ss_pred EEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCCCCC
Confidence 33333789999999999998877788899999999999997 3444333 222222 567 999999999975
Q ss_pred CcccC--HHHHHHHHHhc----CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 91 KKAVD--YQVAKEYADHL----KIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 91 ~~~v~--~~~~~~~~~~~----~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
...+. .+++..+.+.. +++++++||++|.|+++++.++...+...
T Consensus 118 ~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 118 EEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence 43321 23344454443 47899999999999999999888766543
No 177
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.56 E-value=3e-14 Score=105.29 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=79.1
Q ss_pred hhhcccchhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCC
Q psy2646 31 ERFRTITSSYYRGAHGIIVVYDCTDQE-TFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIP 109 (168)
Q Consensus 31 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~ 109 (168)
++|+.+.+.+++++|++++|||+++++ ++..+..|+..+.. .+.|+++|+||+||...+.+..+....+. .++++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence 678888899999999999999999887 89999999987643 37899999999999755444434444444 47899
Q ss_pred EEEEeccCCCCHHHHHHHHHH
Q psy2646 110 FLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 110 ~~~vSa~~~~~i~~i~~~l~~ 130 (168)
++++||+++.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999988763
No 178
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.55 E-value=5.6e-14 Score=99.95 Aligned_cols=121 Identities=21% Similarity=0.230 Sum_probs=84.4
Q ss_pred ccceeeeeeC--CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q psy2646 7 YQTLQNKKEE--RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGN 84 (168)
Q Consensus 7 t~~~~~~~~~--~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~n 84 (168)
|+......+. .....+.|+||||+..|.......++.+|++|+|+|+.+..... ....+..+... +.|+++++|
T Consensus 55 ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlN 130 (188)
T PF00009_consen 55 TIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLN 130 (188)
T ss_dssp SSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEE
T ss_pred ccccccccccccccccceeecccccccceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeee
Confidence 3344445554 66789999999999988877777899999999999998753322 23333444443 688999999
Q ss_pred cCCCCCCcccC--HHHHH-HHHHhc------CCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 85 KNDQTSKKAVD--YQVAK-EYADHL------KIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 85 K~Dl~~~~~v~--~~~~~-~~~~~~------~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
|+|+... .+. .++.. .+.+.. .++++++||.+|.|+.++++.+.+.+
T Consensus 131 K~D~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 131 KMDLIEK-ELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TCTSSHH-HHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred eccchhh-hHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 9998721 111 11111 333333 25799999999999999999998764
No 179
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.54 E-value=4.7e-14 Score=115.60 Aligned_cols=123 Identities=18% Similarity=0.219 Sum_probs=92.3
Q ss_pred cccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 6 PYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 6 ~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
-|+..+...++++++.+.||||||+.+|...+..+++.+|++++|+|+.+. .......|+..+... ++|+++++||
T Consensus 50 iTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~ip~IVviNK 125 (594)
T TIGR01394 50 ITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---GLKPIVVINK 125 (594)
T ss_pred ccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---CCCEEEEEEC
Confidence 466677777888889999999999999988889999999999999999864 244455666666544 6899999999
Q ss_pred CCCCCCccc-CHHHHHHHH-------HhcCCCEEEEeccCCC----------CHHHHHHHHHHHH
Q psy2646 86 NDQTSKKAV-DYQVAKEYA-------DHLKIPFLETSAKNGA----------NVEQAFLTMATEI 132 (168)
Q Consensus 86 ~Dl~~~~~v-~~~~~~~~~-------~~~~~~~~~vSa~~~~----------~i~~i~~~l~~~~ 132 (168)
+|+...+.. ...+...+. +...++++++||++|. |+..+|+.+...+
T Consensus 126 iD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 126 IDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred CCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 998653211 112233332 2235789999999996 7888888877665
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.54 E-value=5.7e-14 Score=117.67 Aligned_cols=105 Identities=19% Similarity=0.267 Sum_probs=77.1
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc--
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ---ETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKA-- 93 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~-- 93 (168)
+..+.||||||++.|..++..++..+|++|||||+++. ++.+.+ .... ..++|+||++||+|+.+...
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i----~~a~---~~~vPiIVviNKiDl~~a~~e~ 408 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAI----NHAK---AAGVPIIVAINKIDKPGANPDR 408 (787)
T ss_pred CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHH----HHHH---hcCCcEEEEEECccccccCHHH
Confidence 36789999999999999999899999999999999873 333322 2222 23689999999999965311
Q ss_pred cCHHHHH---HHHHhcC--CCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 94 VDYQVAK---EYADHLK--IPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 94 v~~~~~~---~~~~~~~--~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
+. .++. .+...++ ++++++||++|.|++++|+++...
T Consensus 409 V~-~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 409 VK-QELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred HH-HHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 11 1111 1223343 789999999999999999998754
No 181
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.54 E-value=1.3e-13 Score=114.70 Aligned_cols=106 Identities=23% Similarity=0.310 Sum_probs=79.8
Q ss_pred CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc
Q psy2646 17 RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ---ETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKA 93 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 93 (168)
+....+.||||||++.|..++..++..+|++|+|||+++. .+++.+. .+. ..+.|+++++||+|+....
T Consensus 292 ~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~----~~k---~~~iPiIVViNKiDl~~~~- 363 (742)
T CHL00189 292 DENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAIN----YIQ---AANVPIIVAINKIDKANAN- 363 (742)
T ss_pred CCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHH----HHH---hcCceEEEEEECCCccccC-
Confidence 4568899999999999999999999999999999999874 3333322 222 2368999999999986532
Q ss_pred cCHHHHHH-H------HHhcC--CCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 94 VDYQVAKE-Y------ADHLK--IPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 94 v~~~~~~~-~------~~~~~--~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
...... + ...++ ++++++||++|.|++++|+++....
T Consensus 364 --~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 364 --TERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred --HHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 121111 1 22333 6899999999999999999998764
No 182
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.53 E-value=1.4e-13 Score=90.66 Aligned_cols=82 Identities=30% Similarity=0.455 Sum_probs=66.4
Q ss_pred ccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHH---HHHhcCCCCcEEE
Q psy2646 5 LPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEE---IDRYACDNVNKLL 81 (168)
Q Consensus 5 ~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~---i~~~~~~~~piiv 81 (168)
.++.......++.....+.+||++|++.+...+..++.++|++++|||++++.+++.+..++.. +... ..+.|+++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piil 113 (119)
T PF08477_consen 35 EITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIIL 113 (119)
T ss_dssp TSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEE
T ss_pred CCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEE
Confidence 3455556677778887899999999999998888889999999999999999999998655444 4433 45699999
Q ss_pred EEecCC
Q psy2646 82 VGNKND 87 (168)
Q Consensus 82 v~nK~D 87 (168)
|+||.|
T Consensus 114 v~nK~D 119 (119)
T PF08477_consen 114 VGNKSD 119 (119)
T ss_dssp EEE-TC
T ss_pred EEeccC
Confidence 999998
No 183
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.52 E-value=8.2e-14 Score=110.69 Aligned_cols=117 Identities=18% Similarity=0.116 Sum_probs=79.4
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEe
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNN--LKQWLEEIDRYACDNVNKLLVGN 84 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~n 84 (168)
|+......+......+.||||||+++|.......+..+|++++|||+++.+++.. ...++...... ...|+++++|
T Consensus 72 Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviN 149 (426)
T TIGR00483 72 TIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAIN 149 (426)
T ss_pred eEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEE
Confidence 4555566677777899999999999886655556789999999999998743211 11111112222 2357999999
Q ss_pred cCCCCCCcc----cCHHHHHHHHHhcC-----CCEEEEeccCCCCHHHHH
Q psy2646 85 KNDQTSKKA----VDYQVAKEYADHLK-----IPFLETSAKNGANVEQAF 125 (168)
Q Consensus 85 K~Dl~~~~~----v~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~i~ 125 (168)
|+|+.+... ....++..+.+..+ ++++++||++|.|+.+.+
T Consensus 150 K~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 150 KMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred ChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 999964211 11234445555554 579999999999998744
No 184
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.52 E-value=1.6e-13 Score=104.93 Aligned_cols=136 Identities=18% Similarity=0.178 Sum_probs=104.5
Q ss_pred CcccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHH
Q psy2646 1 MRLLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ----------ETFNNLKQWLEEID 70 (168)
Q Consensus 1 ~~~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~ 70 (168)
+++..||.|+....+..+.+.+.+||++|+...+..|..++.+++++|||+|+++. +.+.+....+..+.
T Consensus 142 l~~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~ 221 (317)
T cd00066 142 LRARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSIC 221 (317)
T ss_pred eeeecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHH
Confidence 36678999999999998899999999999999999999999999999999999874 45666666666664
Q ss_pred Hhc-CCCCcEEEEEecCCCCCCc----------------ccCHHHHHHHHHh----------cCCCEEEEeccCCCCHHH
Q psy2646 71 RYA-CDNVNKLLVGNKNDQTSKK----------------AVDYQVAKEYADH----------LKIPFLETSAKNGANVEQ 123 (168)
Q Consensus 71 ~~~-~~~~piivv~nK~Dl~~~~----------------~v~~~~~~~~~~~----------~~~~~~~vSa~~~~~i~~ 123 (168)
... ..+.|+++++||.|+..++ .-....+..+... ..+..+.++|.+..++..
T Consensus 222 ~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~ 301 (317)
T cd00066 222 NSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRF 301 (317)
T ss_pred hCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHH
Confidence 433 3579999999999963211 1122333333211 235567889999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2646 124 AFLTMATEIKKRV 136 (168)
Q Consensus 124 i~~~l~~~~~~~~ 136 (168)
+|+.+.+.+....
T Consensus 302 vf~~v~~~i~~~~ 314 (317)
T cd00066 302 VFDAVKDIILQNN 314 (317)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888754
No 185
>PRK11058 GTPase HflX; Provisional
Probab=99.52 E-value=2.3e-13 Score=107.71 Aligned_cols=109 Identities=22% Similarity=0.231 Sum_probs=77.3
Q ss_pred EEEEEeCCCchhh--cccch------hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q psy2646 21 LIVIWDTAGQERF--RTITS------SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKK 92 (168)
Q Consensus 21 ~l~l~Dt~G~~~~--~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 92 (168)
.+.+|||+|..+. ..++. ..++.+|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+....
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~ 325 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF 325 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch
Confidence 6789999998432 22222 236889999999999998877776555554444433468999999999986431
Q ss_pred ccCHHHHHHHHHhcCCC-EEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 93 AVDYQVAKEYADHLKIP-FLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 93 ~v~~~~~~~~~~~~~~~-~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
. . .. .. ...+.+ ++++||++|.|++++++++...+..
T Consensus 326 ~-~--~~-~~-~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 326 E-P--RI-DR-DEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred h-H--HH-HH-HhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 1 1 11 11 123445 5899999999999999999988754
No 186
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.50 E-value=2.9e-13 Score=92.27 Aligned_cols=109 Identities=20% Similarity=0.172 Sum_probs=78.0
Q ss_pred EEEEEEEeCCCchhhccc-------chhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 19 RTLIVIWDTAGQERFRTI-------TSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
...+.+|||||...+... +..++..+|++++++|.++........ +...... ...|+++++||+|+...
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPE 119 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCCh
Confidence 457999999998765433 334788999999999999876655544 3333322 37899999999998754
Q ss_pred cccCHHH---HHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 92 KAVDYQV---AKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 92 ~~v~~~~---~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
....... ........+.+++++||.++.|+.++++++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 120 EEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred hhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 3322111 112223345899999999999999999998865
No 187
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.48 E-value=1.1e-12 Score=101.18 Aligned_cols=136 Identities=20% Similarity=0.211 Sum_probs=104.0
Q ss_pred CcccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHH
Q psy2646 1 MRLLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ----------ETFNNLKQWLEEID 70 (168)
Q Consensus 1 ~~~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~ 70 (168)
+|+..||.|.....+..+++.+.+||.+|+...+..|..++.+++++|||+|+++. +.+.+....+..+.
T Consensus 165 l~~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~ 244 (342)
T smart00275 165 LRSRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESIC 244 (342)
T ss_pred hheeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHH
Confidence 36788999999999988889999999999999999999999999999999999973 45666666677665
Q ss_pred Hhc-CCCCcEEEEEecCCCCCCc---------------ccCHHHHHHHHH-----h------cCCCEEEEeccCCCCHHH
Q psy2646 71 RYA-CDNVNKLLVGNKNDQTSKK---------------AVDYQVAKEYAD-----H------LKIPFLETSAKNGANVEQ 123 (168)
Q Consensus 71 ~~~-~~~~piivv~nK~Dl~~~~---------------~v~~~~~~~~~~-----~------~~~~~~~vSa~~~~~i~~ 123 (168)
... ..+.|+++++||.|+..++ ..+...+..+.. . ..+..+.++|.+..++..
T Consensus 245 ~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~ 324 (342)
T smart00275 245 NSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRV 324 (342)
T ss_pred cCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHH
Confidence 432 3579999999999973211 012233333221 1 124567889999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2646 124 AFLTMATEIKKRV 136 (168)
Q Consensus 124 i~~~l~~~~~~~~ 136 (168)
+|+.+.+.+.++.
T Consensus 325 v~~~v~~~I~~~~ 337 (342)
T smart00275 325 VFDAVKDIILQRN 337 (342)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888764
No 188
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.47 E-value=5e-13 Score=109.31 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=75.1
Q ss_pred EEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc----
Q psy2646 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTD---QETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKA---- 93 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~---- 93 (168)
.+.||||||++.|..++..+++.+|++++|||+++ +.+++.+. .+.. .+.|+++++||+|+.....
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~ 142 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEG 142 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccC
Confidence 38899999999999999999999999999999987 44444432 2222 2689999999999863210
Q ss_pred cCH--------HH------------HHHHHH------------hc--CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 94 VDY--------QV------------AKEYAD------------HL--KIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 94 v~~--------~~------------~~~~~~------------~~--~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
... .. ...+.+ .+ .++++++||++|+|+++++.++.....
T Consensus 143 ~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 143 RPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred chHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 000 00 001110 12 268999999999999999998875443
No 189
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.47 E-value=1.6e-12 Score=90.28 Aligned_cols=108 Identities=25% Similarity=0.230 Sum_probs=72.3
Q ss_pred EEEEEEeCCCchhhcc----------c-chhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 20 TLIVIWDTAGQERFRT----------I-TSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~----------~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
..+.+|||||..+... . ...++..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+
T Consensus 50 ~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl 125 (174)
T cd01895 50 KKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDL 125 (174)
T ss_pred eeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEecccc
Confidence 4578999999743311 1 12346789999999999988665443 23333322 36899999999998
Q ss_pred CCCcccCHHHHH-HHHHhc----CCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVAK-EYADHL----KIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 89 ~~~~~v~~~~~~-~~~~~~----~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
............ .+.+.+ ..+++++||+++.|+.++++++.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 126 VEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred CCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 764322222222 222333 3689999999999999999998753
No 190
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.47 E-value=1.7e-13 Score=94.19 Aligned_cols=116 Identities=18% Similarity=0.245 Sum_probs=78.7
Q ss_pred cccceeeeeeCCeEEEEEEEeCCCchhhcc------cchhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC
Q psy2646 6 PYQTLQNKKEERTRTLIVIWDTAGQERFRT------ITSSYY--RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNV 77 (168)
Q Consensus 6 ~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 77 (168)
.|+..+...+......+.++|+||...+.. ++..++ ...|++++|+|+++.+ .-..+..++.+. +.
T Consensus 33 ~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~ 106 (156)
T PF02421_consen 33 TTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLE---RNLYLTLQLLEL---GI 106 (156)
T ss_dssp SSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHH---HHHHHHHHHHHT---TS
T ss_pred CCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHH---HHHHHHHHHHHc---CC
Confidence 355556555654447899999999654432 223444 5799999999999753 333444555544 69
Q ss_pred cEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHH
Q psy2646 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTM 128 (168)
Q Consensus 78 piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l 128 (168)
|+++++||+|....+.+.. ....+.+.+++|++++||.++.|++++++++
T Consensus 107 P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 107 PVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp SEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred CEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 9999999999865544432 3456777789999999999999999998865
No 191
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.47 E-value=3.7e-13 Score=106.92 Aligned_cols=117 Identities=19% Similarity=0.155 Sum_probs=77.1
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETF-NNLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
|+......++.+++.+.||||||+++|.......+..+|++++|+|+++...+ .....++..+... ...|+++++||
T Consensus 71 T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK 148 (425)
T PRK12317 71 TIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINK 148 (425)
T ss_pred cceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEc
Confidence 55566667777788999999999988765444557899999999999872111 1112222222222 12469999999
Q ss_pred CCCCCCcc----cCHHHHHHHHHhcC-----CCEEEEeccCCCCHHHHH
Q psy2646 86 NDQTSKKA----VDYQVAKEYADHLK-----IPFLETSAKNGANVEQAF 125 (168)
Q Consensus 86 ~Dl~~~~~----v~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~i~ 125 (168)
+|+..... ...+++..+.+..+ ++++++||++|.|+.+.+
T Consensus 149 ~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 149 MDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 99864211 11233444444444 579999999999998754
No 192
>PRK10218 GTP-binding protein; Provisional
Probab=99.46 E-value=7.6e-13 Score=108.56 Aligned_cols=122 Identities=17% Similarity=0.183 Sum_probs=86.2
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+..+...++.+++.+.+|||||+..|...+..+++.+|++|+|||+.+.... ....++..+... +.|+++++||+
T Consensus 55 Ti~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~~---gip~IVviNKi 130 (607)
T PRK10218 55 TILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFAY---GLKPIVVINKV 130 (607)
T ss_pred EEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHHc---CCCEEEEEECc
Confidence 55566777788889999999999999999999999999999999999875322 233333333333 68999999999
Q ss_pred CCCCCccc-CHHHHHHHHH-------hcCCCEEEEeccCCC----------CHHHHHHHHHHHH
Q psy2646 87 DQTSKKAV-DYQVAKEYAD-------HLKIPFLETSAKNGA----------NVEQAFLTMATEI 132 (168)
Q Consensus 87 Dl~~~~~v-~~~~~~~~~~-------~~~~~~~~vSa~~~~----------~i~~i~~~l~~~~ 132 (168)
|+...+.- ..++...+.. ...+|++.+||.+|. |+..+++.+...+
T Consensus 131 D~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 131 DRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 98643211 1122223321 234789999999998 4666766665554
No 193
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.46 E-value=3.9e-13 Score=106.17 Aligned_cols=112 Identities=21% Similarity=0.251 Sum_probs=77.9
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc--CH
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAV--DY 96 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v--~~ 96 (168)
...+.+|||||+++|...+...+..+|++++|+|+++..........+..+... ...|+++++||+|+.+.... ..
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~ 156 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENY 156 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHH
Confidence 467999999999999887777788899999999999642112222222323222 12478999999998753221 11
Q ss_pred HHHHHHHHhc---CCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 97 QVAKEYADHL---KIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 97 ~~~~~~~~~~---~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
.++..+.... +++++++||++|.|+++++++|...+
T Consensus 157 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 157 EEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 2333333332 57899999999999999999998654
No 194
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.46 E-value=1.3e-12 Score=102.28 Aligned_cols=115 Identities=19% Similarity=0.223 Sum_probs=83.1
Q ss_pred EEEEEEeCCCchhhcc----cc---hhhhcCCcEEEEEEeCC---ChhhHHHHHHHHHHHHHhc--CCCCcEEEEEecCC
Q psy2646 20 TLIVIWDTAGQERFRT----IT---SSYYRGAHGIIVVYDCT---DQETFNNLKQWLEEIDRYA--CDNVNKLLVGNKND 87 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~----~~---~~~~~~~d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~D 87 (168)
..+.|+||||..+-.. +. ...+..+|++++|+|++ +.+.++....|+..+..+. ....|+++|+||+|
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiD 286 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKID 286 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCc
Confidence 4589999999753211 11 23578899999999998 4556777777777775542 23689999999999
Q ss_pred CCCCcccCHHHHHHHHHhcC--CCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 88 QTSKKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 88 l~~~~~v~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+.....+ .+....+.+..+ .+++.+||+++.|++++++++...+...
T Consensus 287 l~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 287 LLDEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred cCChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 8654333 233334444444 4799999999999999999999887654
No 195
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.45 E-value=1.6e-12 Score=109.38 Aligned_cols=120 Identities=16% Similarity=0.151 Sum_probs=90.9
Q ss_pred cccceeeeeeCCeEEEEEEEeCCCchhhccc----------chhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc
Q psy2646 6 PYQTLQNKKEERTRTLIVIWDTAGQERFRTI----------TSSYY--RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA 73 (168)
Q Consensus 6 ~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~----------~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 73 (168)
.|+..+...++.++.++.+|||||..++... ...++ ..+|++++|+|+++.+.. ..+..++.+.
T Consensus 36 vTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~- 111 (772)
T PRK09554 36 VTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLEL- 111 (772)
T ss_pred ceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHHc-
Confidence 3566677777777889999999999776432 22343 379999999999986442 2344444443
Q ss_pred CCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 74 CDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 74 ~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+.|+++++||+|+.+.+.+. ....++.+.++++++++||.++.|++++.+.+....
T Consensus 112 --giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 112 --GIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred --CCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 68999999999987655553 455677888899999999999999999999888664
No 196
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.45 E-value=6.6e-13 Score=95.94 Aligned_cols=114 Identities=18% Similarity=0.116 Sum_probs=73.6
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+......+..++.++.||||||+++|...+...++.+|++|+|+|+++...-. .......+... ...++|+++||+
T Consensus 64 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~--~~~~iIvviNK~ 140 (208)
T cd04166 64 TIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLL--GIRHVVVAVNKM 140 (208)
T ss_pred CeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHc--CCCcEEEEEEch
Confidence 344444555556678999999999888665666789999999999998753211 11222222222 124578899999
Q ss_pred CCCCCcccC----HHHHHHHHHhcC---CCEEEEeccCCCCHHH
Q psy2646 87 DQTSKKAVD----YQVAKEYADHLK---IPFLETSAKNGANVEQ 123 (168)
Q Consensus 87 Dl~~~~~v~----~~~~~~~~~~~~---~~~~~vSa~~~~~i~~ 123 (168)
|+.+..... ..+...+.+.++ .+++++||++|.|+.+
T Consensus 141 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 141 DLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 986422111 123334445555 4589999999999875
No 197
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.45 E-value=1.1e-12 Score=104.48 Aligned_cols=101 Identities=23% Similarity=0.212 Sum_probs=72.0
Q ss_pred EEEEEEEeCCCchh--------hcccchhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 19 RTLIVIWDTAGQER--------FRTITSSYYRGAHGIIVVYDCTDQETFN--NLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
+..+.+|||||.+. +......++..+|++|+|+|+++..+.. .+..|+.. . +.|+++++||+|+
T Consensus 48 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~---~---~~piilv~NK~D~ 121 (435)
T PRK00093 48 GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK---S---NKPVILVVNKVDG 121 (435)
T ss_pred CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---c---CCcEEEEEECccC
Confidence 37899999999876 2223455788999999999998753322 23333332 2 6899999999997
Q ss_pred CCCcccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
.... ....++ ..+++ .++++||.+|.|+.++|+++..
T Consensus 122 ~~~~----~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 122 PDEE----ADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ccch----hhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 5421 122223 23455 4899999999999999999987
No 198
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.45 E-value=1.3e-12 Score=103.85 Aligned_cols=114 Identities=20% Similarity=0.217 Sum_probs=78.5
Q ss_pred eeeeCCeEEEEEEEeCCCc--------hhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy2646 12 NKKEERTRTLIVIWDTAGQ--------ERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83 (168)
Q Consensus 12 ~~~~~~~~~~l~l~Dt~G~--------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~ 83 (168)
...+...+..+.+|||||. +.+......+++.+|++++|+|+.+..+..+ ..+...+.+. +.|+++|+
T Consensus 39 ~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d-~~i~~~l~~~---~~piilVv 114 (429)
T TIGR03594 39 YGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPED-EEIAKWLRKS---GKPVILVA 114 (429)
T ss_pred EEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHHh---CCCEEEEE
Confidence 3333334457999999996 3344445667899999999999987533332 1222233322 68999999
Q ss_pred ecCCCCCCcccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 84 NKNDQTSKKAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 84 nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
||+|+...... ..++ ..++. +++++||.+|.|+.++++++...+..
T Consensus 115 NK~D~~~~~~~----~~~~-~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 115 NKIDGKKEDAV----AAEF-YSLGFGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred ECccCCccccc----HHHH-HhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 99998654321 1222 34565 79999999999999999999877643
No 199
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.44 E-value=2.5e-12 Score=88.59 Aligned_cols=113 Identities=18% Similarity=0.139 Sum_probs=75.8
Q ss_pred eCCeEEEEEEEeCCCchhhc--------ccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 15 EERTRTLIVIWDTAGQERFR--------TITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 15 ~~~~~~~l~l~Dt~G~~~~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
+......+.+|||||..... ......+..+|++++|+|++++.+.. ...+...+... +.|+++++||+
T Consensus 46 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~---~~~~iiv~nK~ 121 (168)
T cd04163 46 YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKKS---KTPVILVLNKI 121 (168)
T ss_pred EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHHh---CCCEEEEEEch
Confidence 34445789999999975332 22344688899999999999862211 12223333332 58999999999
Q ss_pred CCCCCcccCHHHHHHHHHhc-CCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 87 DQTSKKAVDYQVAKEYADHL-KIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 87 Dl~~~~~v~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
|+.............+.... ..+++++|++++.|++++++++.+.
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 122 DLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred hccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 98742222222333344444 3689999999999999999998764
No 200
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.44 E-value=1.4e-12 Score=109.52 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=77.6
Q ss_pred eeCCeEEEEEEEeCCCchh----------hcccc-hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEE
Q psy2646 14 KEERTRTLIVIWDTAGQER----------FRTIT-SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLV 82 (168)
Q Consensus 14 ~~~~~~~~l~l~Dt~G~~~----------~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv 82 (168)
.+++. .+.||||||..+ |..+. ..+++.+|++++|+|+++..++.+.. ++..+.. .+.|+++|
T Consensus 494 ~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV 567 (712)
T PRK09518 494 EIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLV 567 (712)
T ss_pred EECCC--EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEE
Confidence 34444 567999999632 22221 23478899999999999887777654 3333433 36899999
Q ss_pred EecCCCCCCcccCHHHHHH-HHHhc----CCCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 83 GNKNDQTSKKAVDYQVAKE-YADHL----KIPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 83 ~nK~Dl~~~~~v~~~~~~~-~~~~~----~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
+||+|+.+... .+.... +...+ ..+++++||++|.|++++|+.+.+.+....
T Consensus 568 ~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 568 FNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred EEchhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 99999965322 111111 11111 257899999999999999999998876543
No 201
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.44 E-value=8.2e-13 Score=104.39 Aligned_cols=111 Identities=23% Similarity=0.258 Sum_probs=73.3
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC--HH
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD--YQ 97 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~--~~ 97 (168)
..+.||||||+++|..........+|++++|+|++++.........+..+... ...|+++++||+|+.+..... .+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 57999999999887654444455679999999999642111111112222222 124689999999986532221 12
Q ss_pred HHHHHHHhc---CCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 98 VAKEYADHL---KIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 98 ~~~~~~~~~---~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+...+.+.. +++++++||+++.|++++++++...+
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 333343322 47899999999999999999988765
No 202
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.43 E-value=1.5e-12 Score=103.72 Aligned_cols=114 Identities=21% Similarity=0.187 Sum_probs=76.6
Q ss_pred CeEEEEEEEeCCCchhhccc----------c-hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 17 RTRTLIVIWDTAGQERFRTI----------T-SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~~~~----------~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
..+..+.+|||||..+.... . ..+++.+|++|+|+|++++.+..+.. +...+... +.|+++++||
T Consensus 218 ~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~---~~~~ivv~NK 293 (435)
T PRK00093 218 RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALEA---GRALVIVVNK 293 (435)
T ss_pred ECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc---CCcEEEEEEC
Confidence 34456889999996432211 1 23678999999999999876655543 33333332 6899999999
Q ss_pred CCCCCCcccCHHHHHHHHHh----cCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 86 NDQTSKKAVDYQVAKEYADH----LKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 86 ~Dl~~~~~v~~~~~~~~~~~----~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+|+...... .+....+... ..++++++||++|.|++++|+.+.......
T Consensus 294 ~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 294 WDLVDEKTM-EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred ccCCCHHHH-HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 998643211 1111112222 247999999999999999999998766544
No 203
>KOG0462|consensus
Probab=99.42 E-value=1.8e-12 Score=102.65 Aligned_cols=121 Identities=21% Similarity=0.197 Sum_probs=88.5
Q ss_pred cceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 8 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
+....++.+++.+.|.+.||||+-+|..-....+..++|+|+|+|++...--+...+++..+. .+..+|.|+||+|
T Consensus 113 Qtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKID 188 (650)
T KOG0462|consen 113 QTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKID 188 (650)
T ss_pred eeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccC
Confidence 334444556777999999999999998888888999999999999997654444555444442 3578999999999
Q ss_pred CCCCcccC-HHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 88 QTSKKAVD-YQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 88 l~~~~~v~-~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
++..+.-. ..+...+......+++.+||++|.|++++|+++++.+
T Consensus 189 lp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 189 LPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred CCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhC
Confidence 98643210 1122233333345899999999999999998888765
No 204
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.42 E-value=7.1e-13 Score=96.50 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=73.0
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhh---HH---HHHHHHHHHHHhcCCCCcEE
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQET---FN---NLKQWLEEIDRYACDNVNKL 80 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~pii 80 (168)
|+......+......+.+|||||+..|...+...++.+|++|+|+|+++... |. .....+...... ...|++
T Consensus 64 T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ii 141 (219)
T cd01883 64 TIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLI 141 (219)
T ss_pred CeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEE
Confidence 4445556666677899999999998776656666788999999999987410 11 111112222222 236899
Q ss_pred EEEecCCCCCCc--ccCHH----HHHHHHHhc-----CCCEEEEeccCCCCHH
Q psy2646 81 LVGNKNDQTSKK--AVDYQ----VAKEYADHL-----KIPFLETSAKNGANVE 122 (168)
Q Consensus 81 vv~nK~Dl~~~~--~v~~~----~~~~~~~~~-----~~~~~~vSa~~~~~i~ 122 (168)
+++||+|+.... ..... ++..+.... +++++++||++|.|++
T Consensus 142 ivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 142 VAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 999999997321 11111 222223333 3679999999999986
No 205
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.42 E-value=2.7e-12 Score=105.78 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=75.2
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCCcccC--H
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNKNDQTSKKAVD--Y 96 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~v~--~ 96 (168)
..+.||||||+++|.......+.++|++++|+|+++... ....+.+..+... +.| ++||+||+|+.+...+. .
T Consensus 51 ~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~-~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~ 126 (614)
T PRK10512 51 RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVM-AQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVR 126 (614)
T ss_pred cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHH
Confidence 458999999999987666667889999999999987311 1122222223222 345 58999999986532222 1
Q ss_pred HHHHHHHHhcC---CCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 97 QVAKEYADHLK---IPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 97 ~~~~~~~~~~~---~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
++...+....+ .+++++||.+|.|++++++.+....
T Consensus 127 ~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 127 RQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred HHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 23334444333 6899999999999999999987654
No 206
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.40 E-value=5.7e-12 Score=89.82 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=72.4
Q ss_pred EEEEEEeCCCc----------hhhcccchhhhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 20 TLIVIWDTAGQ----------ERFRTITSSYYRGA---HGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 20 ~~l~l~Dt~G~----------~~~~~~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
..+.||||||. +++..+...+++.+ +++++++|.+++.+.... .+...+.. .+.|+++++||+
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~ 145 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKA 145 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECc
Confidence 67999999994 34444555566544 678888998875433221 11222222 268999999999
Q ss_pred CCCCCcccC--HHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 87 DQTSKKAVD--YQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 87 Dl~~~~~v~--~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
|+.+..... ...+..+......+++++||+++.|++++++.+...+.
T Consensus 146 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 146 DKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 986532211 12233333333678999999999999999999987654
No 207
>PRK00089 era GTPase Era; Reviewed
Probab=99.40 E-value=5.2e-12 Score=95.71 Aligned_cols=112 Identities=20% Similarity=0.199 Sum_probs=75.8
Q ss_pred eEEEEEEEeCCCchhhc--------ccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 18 TRTLIVIWDTAGQERFR--------TITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
...++.||||||..... ......+.++|++++|+|+++..+. ....++..+. ..+.|+++|+||+|+.
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLV 126 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCC
Confidence 44789999999975422 2233467889999999999983211 1122223332 2268999999999997
Q ss_pred CCcccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
............+.+..+ .+++++||+++.|++++++++...+.
T Consensus 127 ~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 127 KDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred CCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 432222233344444444 67999999999999999999988764
No 208
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.39 E-value=4.8e-12 Score=106.24 Aligned_cols=107 Identities=21% Similarity=0.135 Sum_probs=73.1
Q ss_pred EEEEEEEeCCCchh--------hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 19 RTLIVIWDTAGQER--------FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
+..+.+|||||.+. +......+++.+|++|+|+|+++.-...+ ..|...+.. .+.|+++|+||+|+..
T Consensus 322 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 322 GTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQA 397 (712)
T ss_pred CEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECccccc
Confidence 45789999999763 23334557889999999999986422111 134444433 3789999999999854
Q ss_pred CcccCHHHHHHH-HHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 91 KKAVDYQVAKEY-ADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 91 ~~~v~~~~~~~~-~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
... ....+ ...++ ..+++||.+|.|+.++|+++...+..
T Consensus 398 ~~~----~~~~~~~lg~~-~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 398 SEY----DAAEFWKLGLG-EPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred chh----hHHHHHHcCCC-CeEEEECCCCCCchHHHHHHHHhccc
Confidence 211 11222 22222 46799999999999999999988754
No 209
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.36 E-value=9.7e-12 Score=102.00 Aligned_cols=104 Identities=19% Similarity=0.265 Sum_probs=73.5
Q ss_pred EEEEeCCCchhhcccchhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc----c
Q psy2646 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTD---QETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKA----V 94 (168)
Q Consensus 22 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----v 94 (168)
+.||||||++.|..++...++.+|++++|||+++ ++++..+.. +.. .+.|+++++||+|+..... .
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~ 145 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDA 145 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCc
Confidence 6899999999999888888999999999999997 455554432 222 3689999999999852100 0
Q ss_pred CH--------H-----------HHHHHHHh-------------c--CCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 95 DY--------Q-----------VAKEYADH-------------L--KIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 95 ~~--------~-----------~~~~~~~~-------------~--~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
.. . +....... + .++++++||.+|.|+.++++.+...+
T Consensus 146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 0 00001111 1 26799999999999999998886544
No 210
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.36 E-value=4.4e-12 Score=91.32 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=60.7
Q ss_pred CeEEEEEEEeCCCchhhcccchhhhcCC-cEEEEEEeCCCh-hhHHHHHHHHHHHHHh---cCCCCcEEEEEecCCCCC
Q psy2646 17 RTRTLIVIWDTAGQERFRTITSSYYRGA-HGIIVVYDCTDQ-ETFNNLKQWLEEIDRY---ACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~-~s~~~~~~~~~~i~~~---~~~~~piivv~nK~Dl~~ 90 (168)
+....+.+||+||+.+++..+..+++.+ +++|||+|+++. .++..+..|+..+... ...+.|+++++||+|+..
T Consensus 45 ~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 45 GKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 3457799999999999998888899998 999999999987 6777777776665322 135799999999999864
No 211
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.35 E-value=1.5e-11 Score=90.55 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=61.5
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+......++.++.++.+|||||+.+|...+..+++.+|++++|+|+++.... ....++..+... +.|+++++||+
T Consensus 51 ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~ 126 (237)
T cd04168 51 TIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKI 126 (237)
T ss_pred ceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECc
Confidence 34455666677778999999999999888888899999999999999876433 334444544433 68999999999
Q ss_pred CCC
Q psy2646 87 DQT 89 (168)
Q Consensus 87 Dl~ 89 (168)
|+.
T Consensus 127 D~~ 129 (237)
T cd04168 127 DRA 129 (237)
T ss_pred ccc
Confidence 975
No 212
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.35 E-value=8.7e-12 Score=87.95 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=63.2
Q ss_pred EEEEEeCCCch----------hhcccchhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 21 LIVIWDTAGQE----------RFRTITSSYYRG---AHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 21 ~l~l~Dt~G~~----------~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
.+.+|||||.. .+..+...|++. ++++++|+|++++-+..+. .++..+.. .+.|+++++||+|
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D 140 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKAD 140 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcc
Confidence 58999999942 333344455554 5799999999875443333 22333332 2689999999999
Q ss_pred CCCCccc--CHHHHHHHHHhcC--CCEEEEeccCCCCHH
Q psy2646 88 QTSKKAV--DYQVAKEYADHLK--IPFLETSAKNGANVE 122 (168)
Q Consensus 88 l~~~~~v--~~~~~~~~~~~~~--~~~~~vSa~~~~~i~ 122 (168)
+...... ..+++.......+ .+++++||++|+|++
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 141 KLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 8643221 1233334444433 589999999999973
No 213
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.32 E-value=1.8e-11 Score=89.13 Aligned_cols=69 Identities=25% Similarity=0.307 Sum_probs=54.3
Q ss_pred CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 17 RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
++.+.+.||||||++.|......+++.+|++++|||+.+....... ..+..... .+.|+++++||+|+.
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCcc
Confidence 4478999999999999988888899999999999999986554432 22222222 257999999999975
No 214
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.31 E-value=4.7e-11 Score=85.44 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=73.6
Q ss_pred cceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecC
Q psy2646 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNKN 86 (168)
Q Consensus 8 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~ 86 (168)
+......++.++.++.|.||||+..|.......+..+|++++|+|++.... ......+..+... +.| +|+++||+
T Consensus 53 i~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~ 128 (195)
T cd01884 53 INTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKA 128 (195)
T ss_pred EEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCC
Confidence 334445556667789999999998876666667889999999999986422 1222333334333 466 78999999
Q ss_pred CCCCCcccC---HHHHHHHHHhc-----CCCEEEEeccCCCCHH
Q psy2646 87 DQTSKKAVD---YQVAKEYADHL-----KIPFLETSAKNGANVE 122 (168)
Q Consensus 87 Dl~~~~~v~---~~~~~~~~~~~-----~~~~~~vSa~~~~~i~ 122 (168)
|+....... ..++..+.... +++++++||.+|.|+.
T Consensus 129 D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 129 DMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 986422211 12333444333 3689999999999853
No 215
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.31 E-value=5.1e-11 Score=87.55 Aligned_cols=114 Identities=23% Similarity=0.135 Sum_probs=75.6
Q ss_pred eeeeCCeEEEEEEEeCCCchhhc----c---cchhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHH--------------
Q psy2646 12 NKKEERTRTLIVIWDTAGQERFR----T---ITSSYYRGAHGIIVVYDCTDQE-TFNNLKQWLEEI-------------- 69 (168)
Q Consensus 12 ~~~~~~~~~~l~l~Dt~G~~~~~----~---~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i-------------- 69 (168)
...+...+..+++|||||..+.. . ....+++++|++++|+|++++. ....+.+.+...
T Consensus 39 ~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~ 118 (233)
T cd01896 39 PGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIK 118 (233)
T ss_pred EEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEE
Confidence 33333445789999999985432 1 2234788999999999998764 333333333211
Q ss_pred ---------------------------HHh----------------------c--CCCCcEEEEEecCCCCCCcccCHHH
Q psy2646 70 ---------------------------DRY----------------------A--CDNVNKLLVGNKNDQTSKKAVDYQV 98 (168)
Q Consensus 70 ---------------------------~~~----------------------~--~~~~piivv~nK~Dl~~~~~v~~~~ 98 (168)
.++ . ..-.|+++|+||+|+.. .++
T Consensus 119 ~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~ 193 (233)
T cd01896 119 KKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEE 193 (233)
T ss_pred EEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHH
Confidence 000 0 12369999999999853 234
Q ss_pred HHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 99 AKEYADHLKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 99 ~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
...++.. .+++++||.++.|++++|+.+.+.+
T Consensus 194 ~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 194 LDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred HHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 4445443 4689999999999999999998765
No 216
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.30 E-value=2.3e-11 Score=88.16 Aligned_cols=70 Identities=24% Similarity=0.293 Sum_probs=54.7
Q ss_pred CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 16 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
+++.+.+.+|||||+.+|...+..++..+|++++|+|+++..++.. ..++..... .+.|+++++||+|+.
T Consensus 67 ~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 67 KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 3567899999999999888778888999999999999987655432 333333322 258999999999975
No 217
>PRK12736 elongation factor Tu; Reviewed
Probab=99.29 E-value=4.1e-11 Score=94.37 Aligned_cols=109 Identities=16% Similarity=0.119 Sum_probs=70.5
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEec
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNK 85 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK 85 (168)
|+......++.+...+.|+||||+++|.......+..+|++++|+|++.... ......+..+... +.| +|+++||
T Consensus 62 T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~---g~~~~IvviNK 137 (394)
T PRK12736 62 TINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYLVVFLNK 137 (394)
T ss_pred cEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCEEEEEEEe
Confidence 3444445555566788999999998886655555678999999999986422 1222333333333 577 6789999
Q ss_pred CCCCCCcccC---HHHHHHHHHhcC-----CCEEEEeccCCC
Q psy2646 86 NDQTSKKAVD---YQVAKEYADHLK-----IPFLETSAKNGA 119 (168)
Q Consensus 86 ~Dl~~~~~v~---~~~~~~~~~~~~-----~~~~~vSa~~~~ 119 (168)
+|+.+..... .++...+....+ ++++++||.+|.
T Consensus 138 ~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 138 VDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence 9986432221 123344444443 589999999983
No 218
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.29 E-value=4.5e-11 Score=87.30 Aligned_cols=108 Identities=17% Similarity=0.160 Sum_probs=70.9
Q ss_pred eEEEEEEEeCCCchhhcccchhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYY--RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD 95 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~ 95 (168)
....+.|.||||+++|.......+ ..+|++++|+|++.... .....++..+... +.|+++++||+|+.+...+.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~~ 157 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANILQ 157 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHHH
Confidence 345789999999988855333334 36899999999986533 2223344444333 68999999999986432221
Q ss_pred H--HHHHHHHH--------------------------hcCCCEEEEeccCCCCHHHHHHHHH
Q psy2646 96 Y--QVAKEYAD--------------------------HLKIPFLETSAKNGANVEQAFLTMA 129 (168)
Q Consensus 96 ~--~~~~~~~~--------------------------~~~~~~~~vSa~~~~~i~~i~~~l~ 129 (168)
. .+...+.. ...+|++.+||.+|.|++++...|.
T Consensus 158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1 11112211 0124899999999999999887764
No 219
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.28 E-value=5.2e-11 Score=93.81 Aligned_cols=109 Identities=15% Similarity=0.100 Sum_probs=71.6
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEec
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKL-LVGNK 85 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK 85 (168)
|+......++.++.++.||||||+++|.......+..+|++++|+|++...... ....+..+... +.|.+ +++||
T Consensus 62 Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK 137 (394)
T TIGR00485 62 TINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNK 137 (394)
T ss_pred ceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEe
Confidence 444555666666778999999999988654445567789999999998742211 22233333333 56655 68999
Q ss_pred CCCCCCcccC---HHHHHHHHHhcC-----CCEEEEeccCCC
Q psy2646 86 NDQTSKKAVD---YQVAKEYADHLK-----IPFLETSAKNGA 119 (168)
Q Consensus 86 ~Dl~~~~~v~---~~~~~~~~~~~~-----~~~~~vSa~~~~ 119 (168)
+|+.+..... ..+...+.+.++ ++++++||.++.
T Consensus 138 ~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 138 CDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 9986532221 123445555554 789999999885
No 220
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.2e-10 Score=92.35 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=79.5
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ---ETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD 95 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~ 95 (168)
.-.+.|.||||++.|..|+..-..=+|.+|||+++++. ++.+.+.+ .+ ..++|++|++||+|.++...
T Consensus 54 ~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~h----ak---~a~vP~iVAiNKiDk~~~np-- 124 (509)
T COG0532 54 IPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINH----AK---AAGVPIVVAINKIDKPEANP-- 124 (509)
T ss_pred CceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHH----HH---HCCCCEEEEEecccCCCCCH--
Confidence 34688999999999999988888889999999999984 44443322 22 34899999999999874221
Q ss_pred HHHHHHH------HHhcC--CCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 96 YQVAKEY------ADHLK--IPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 96 ~~~~~~~------~~~~~--~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
.....++ .+.|+ ..++++||++|.|+.+++..+.-.....
T Consensus 125 ~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 125 DKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred HHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence 1111111 22333 5799999999999999999888665544
No 221
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.27 E-value=4.9e-11 Score=95.18 Aligned_cols=113 Identities=20% Similarity=0.201 Sum_probs=78.5
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHH-------HHHHHHHHHHHhcCCCC-c
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFN-------NLKQWLEEIDRYACDNV-N 78 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~-p 78 (168)
|+......+..+...+.|.|+||+++|.......+..+|++|+|+|+++. .|+ .+...+...... ++ +
T Consensus 72 Ti~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~ 147 (447)
T PLN00043 72 TIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQ 147 (447)
T ss_pred eEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCc
Confidence 44555666677788999999999999988778889999999999999862 232 333322222222 55 5
Q ss_pred EEEEEecCCCCCCc--c--c--CHHHHHHHHHhcC-----CCEEEEeccCCCCHHH
Q psy2646 79 KLLVGNKNDQTSKK--A--V--DYQVAKEYADHLK-----IPFLETSAKNGANVEQ 123 (168)
Q Consensus 79 iivv~nK~Dl~~~~--~--v--~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~ 123 (168)
+|+++||+|+.... . . ..+++..+.+..+ ++++++||.+|.|+.+
T Consensus 148 iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 148 MICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 78899999976211 0 0 1234455555555 6799999999999854
No 222
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.27 E-value=7.4e-11 Score=101.40 Aligned_cols=104 Identities=18% Similarity=0.281 Sum_probs=72.9
Q ss_pred EEEEeCCCchhhcccchhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC---
Q psy2646 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTD---QETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD--- 95 (168)
Q Consensus 22 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~--- 95 (168)
+.||||||++.|..+....+..+|++++|+|+++ +++++.+. .+... +.|+++++||+|+.......
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~~---~iPiIVViNKiDL~~~~~~~~~~ 600 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQY---KTPFVVAANKIDLIPGWNISEDE 600 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHHc---CCCEEEEEECCCCccccccccch
Confidence 8999999999998887778889999999999986 34444332 22222 68999999999985321110
Q ss_pred -------------HHHHH----H----HH------------Hhc--CCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 96 -------------YQVAK----E----YA------------DHL--KIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 96 -------------~~~~~----~----~~------------~~~--~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
..+.. . +. +.+ .++++++||++|.|+++++.++....
T Consensus 601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 00110 0 11 111 26899999999999999998876543
No 223
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=8.4e-11 Score=92.11 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=86.4
Q ss_pred CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC
Q psy2646 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD 95 (168)
Q Consensus 16 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~ 95 (168)
+|+.+.|.+.||||+=.|.--....+..|.|.++++|++..-.-+.+.+.+..+. .+..++-|.||+||+....
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp-- 145 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP-- 145 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH--
Confidence 5788999999999998887666677889999999999998755566666666553 3578999999999986432
Q ss_pred HHHHHHHHHhcCC---CEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 96 YQVAKEYADHLKI---PFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 96 ~~~~~~~~~~~~~---~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
..-..++..-.|+ ..+.+||++|.|++++++++++.+.
T Consensus 146 ervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 146 ERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred HHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCC
Confidence 1222334444554 5789999999999999999887653
No 224
>KOG0077|consensus
Probab=99.25 E-value=1.3e-11 Score=84.01 Aligned_cols=127 Identities=17% Similarity=0.191 Sum_probs=100.3
Q ss_pred ccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEE
Q psy2646 3 LLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRY-ACDNVNKLL 81 (168)
Q Consensus 3 ~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiv 81 (168)
.++||.......+.-.++.++.+|.+|+..-+..|..|+..+|++++.||+-+.+.|.+...-++.+... .....|+++
T Consensus 47 qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~li 126 (193)
T KOG0077|consen 47 QHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLI 126 (193)
T ss_pred ccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCccee
Confidence 4789999988888888899999999999988899999999999999999999999988887766665322 235799999
Q ss_pred EEecCCCCCCcccCHHHHHH------HHHhc--------C---CCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 82 VGNKNDQTSKKAVDYQVAKE------YADHL--------K---IPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 82 v~nK~Dl~~~~~v~~~~~~~------~~~~~--------~---~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
++||+|.+.. .+.++..- +.... + +.++.||...+.+.-+.|.|+...
T Consensus 127 lgnKId~p~a--~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 127 LGNKIDIPYA--ASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred ecccccCCCc--ccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 9999998764 23333221 11111 1 368899999999988888888654
No 225
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.23 E-value=1.8e-10 Score=79.38 Aligned_cols=105 Identities=17% Similarity=0.294 Sum_probs=68.4
Q ss_pred EEEEEeCCCch----------hhcccchhhhc---CCcEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 21 LIVIWDTAGQE----------RFRTITSSYYR---GAHGIIVVYDCTDQE--TFNNLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 21 ~l~l~Dt~G~~----------~~~~~~~~~~~---~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
.+.+|||||.. .+...+..|+. +.+++++++|.+... ....+..|+.. . +.|+++++||
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~---~---~~~vi~v~nK 119 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE---L---GIPFLVVLTK 119 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH---c---CCCEEEEEEc
Confidence 78999999942 34444455554 457889999998652 22223333332 2 5899999999
Q ss_pred CCCCCCcccC--HHHHHHHHH--hcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 86 NDQTSKKAVD--YQVAKEYAD--HLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 86 ~Dl~~~~~v~--~~~~~~~~~--~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
+|+....... ........+ ....+++++||+++.|+.++++++.+.
T Consensus 120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 120 ADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 9985432211 112222222 234689999999999999999999865
No 226
>KOG0082|consensus
Probab=99.22 E-value=8.3e-11 Score=89.95 Aligned_cols=137 Identities=19% Similarity=0.190 Sum_probs=103.7
Q ss_pred CcccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHH
Q psy2646 1 MRLLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ----------ETFNNLKQWLEEID 70 (168)
Q Consensus 1 ~~~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~ 70 (168)
+|+.+||.|+..+.+..++..+.++|+|||..-+.-|-+++.+++++|||+++++- +.+.+...++..+.
T Consensus 176 L~~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~ 255 (354)
T KOG0082|consen 176 LRSRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESIC 255 (354)
T ss_pred HhhccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHh
Confidence 36789999999999999999999999999998888999999999999999999863 23344455666665
Q ss_pred Hhc-CCCCcEEEEEecCCCCCCcc---------------cCHHHHHHHHH-----h-----cCCCEEEEeccCCCCHHHH
Q psy2646 71 RYA-CDNVNKLLVGNKNDQTSKKA---------------VDYQVAKEYAD-----H-----LKIPFLETSAKNGANVEQA 124 (168)
Q Consensus 71 ~~~-~~~~piivv~nK~Dl~~~~~---------------v~~~~~~~~~~-----~-----~~~~~~~vSa~~~~~i~~i 124 (168)
.+. -.+.++|++.||.||..++. -+.+++..+.. . ..+-+..++|.+..+|+.+
T Consensus 256 n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~v 335 (354)
T KOG0082|consen 256 NNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFV 335 (354)
T ss_pred cCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHH
Confidence 443 34799999999999843221 12233333321 1 1245677799999999999
Q ss_pred HHHHHHHHHHHhc
Q psy2646 125 FLTMATEIKKRVT 137 (168)
Q Consensus 125 ~~~l~~~~~~~~~ 137 (168)
|+++.+.+....-
T Consensus 336 f~av~d~Ii~~nl 348 (354)
T KOG0082|consen 336 FDAVTDTIIQNNL 348 (354)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 227
>PRK12735 elongation factor Tu; Reviewed
Probab=99.22 E-value=1.5e-10 Score=91.31 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=69.4
Q ss_pred ceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEecCC
Q psy2646 9 TLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKL-LVGNKND 87 (168)
Q Consensus 9 ~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~D 87 (168)
......+..+..++.|+||||+++|.......+..+|++++|+|+.+... .....++..+... +.|.+ +++||+|
T Consensus 64 ~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~---gi~~iivvvNK~D 139 (396)
T PRK12735 64 NTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCD 139 (396)
T ss_pred EEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEecC
Confidence 33444455556688999999998876655566778999999999987422 2222333333322 57755 6799999
Q ss_pred CCCCcccC---HHHHHHHHHhcC-----CCEEEEeccCCCC
Q psy2646 88 QTSKKAVD---YQVAKEYADHLK-----IPFLETSAKNGAN 120 (168)
Q Consensus 88 l~~~~~v~---~~~~~~~~~~~~-----~~~~~vSa~~~~~ 120 (168)
+.+..... ..++..+...++ ++++++||.++.|
T Consensus 140 l~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 140 MVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred CcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhcccc
Confidence 86432211 123444444432 6899999999853
No 228
>PRK09866 hypothetical protein; Provisional
Probab=99.21 E-value=3.2e-10 Score=92.39 Aligned_cols=124 Identities=16% Similarity=0.152 Sum_probs=82.5
Q ss_pred ccccceeeeeeCC---eEEEEEEEeCCCchhh-----cccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC
Q psy2646 5 LPYQTLQNKKEER---TRTLIVIWDTAGQERF-----RTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDN 76 (168)
Q Consensus 5 ~~t~~~~~~~~~~---~~~~l~l~Dt~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 76 (168)
+|-+.+.+.++.+ ...++.|.||||.... .......+..+|+++||+|.+...+..+ ..++..+... ...
T Consensus 212 ~p~iev~f~hl~g~l~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~ 289 (741)
T PRK09866 212 IPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQS 289 (741)
T ss_pred CceeeeeeeeccccccccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCC
Confidence 4667777777754 2357899999998542 2233457899999999999987533333 2233444333 223
Q ss_pred CcEEEEEecCCCCCCcccCHHHHHHHHHh----cC---CCEEEEeccCCCCHHHHHHHHHH
Q psy2646 77 VNKLLVGNKNDQTSKKAVDYQVAKEYADH----LK---IPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 77 ~piivv~nK~Dl~~~~~v~~~~~~~~~~~----~~---~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
.|+++|+||+|+.....-..+....+... .+ ..+|++||+.|.|++++++.+..
T Consensus 290 ~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 290 VPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 59999999999854322223344444321 12 36999999999999999998875
No 229
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.21 E-value=2.7e-10 Score=85.26 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=60.6
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
++......++.+++.+.+|||||+.+|......+++.+|++|+|+|+++.... ....++..... .+.|+++++||+
T Consensus 58 si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~ 133 (267)
T cd04169 58 SVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKL 133 (267)
T ss_pred CeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECC
Confidence 44556667788889999999999998877667788999999999999875322 22333333322 368999999999
Q ss_pred CCCCC
Q psy2646 87 DQTSK 91 (168)
Q Consensus 87 Dl~~~ 91 (168)
|+...
T Consensus 134 D~~~a 138 (267)
T cd04169 134 DREGR 138 (267)
T ss_pred ccCCC
Confidence 98653
No 230
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.20 E-value=1.5e-10 Score=91.55 Aligned_cols=114 Identities=16% Similarity=0.139 Sum_probs=73.1
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+......+..++.++.||||||+++|.......+..+|++++|+|+.....-..... +..+... ...++++++||+
T Consensus 67 Tid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~~~~~~~--~~~~iivviNK~ 143 (406)
T TIGR02034 67 TIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-SYIASLL--GIRHVVLAVNKM 143 (406)
T ss_pred CeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-HHHHHHc--CCCcEEEEEEec
Confidence 3445555565666789999999999886655567889999999999986422111111 2222222 124689999999
Q ss_pred CCCCCcccCH----HHHHHHHHhcC---CCEEEEeccCCCCHHH
Q psy2646 87 DQTSKKAVDY----QVAKEYADHLK---IPFLETSAKNGANVEQ 123 (168)
Q Consensus 87 Dl~~~~~v~~----~~~~~~~~~~~---~~~~~vSa~~~~~i~~ 123 (168)
|+.....-.. ++...+.+..+ ++++++||.+|.|+.+
T Consensus 144 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 144 DLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 9864221111 12222333333 5799999999999875
No 231
>COG1159 Era GTPase [General function prediction only]
Probab=99.19 E-value=2.6e-10 Score=84.79 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=78.3
Q ss_pred eeeCCeEEEEEEEeCCCchhhcc--------cchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q psy2646 13 KKEERTRTLIVIWDTAGQERFRT--------ITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGN 84 (168)
Q Consensus 13 ~~~~~~~~~l~l~Dt~G~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~n 84 (168)
.-+..++.++.|.||||..+-.. .....+..+|+++||+|++..-.- .....++.+.. .+.|+++++|
T Consensus 47 GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iN 122 (298)
T COG1159 47 GIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVN 122 (298)
T ss_pred EEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEE
Confidence 33445578999999999764322 224457889999999999974221 22233444433 3689999999
Q ss_pred cCCCCCCcccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 85 KNDQTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 85 K~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
|+|....+..-......+...+. ..++++||++|.|++.+.+.+...+.+
T Consensus 123 KID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 123 KIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 99987655421122222222222 489999999999999888887766543
No 232
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.19 E-value=3.4e-10 Score=91.97 Aligned_cols=79 Identities=19% Similarity=0.137 Sum_probs=59.0
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+......++.+++.+.+|||||+.+|......+++.+|++|+|+|+++.... ....++..... .+.|+++++||+
T Consensus 66 Si~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~ 141 (526)
T PRK00741 66 SVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKL 141 (526)
T ss_pred ceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECC
Confidence 34455566777788999999999998887667789999999999999875321 23334433332 378999999999
Q ss_pred CCC
Q psy2646 87 DQT 89 (168)
Q Consensus 87 Dl~ 89 (168)
|+.
T Consensus 142 D~~ 144 (526)
T PRK00741 142 DRD 144 (526)
T ss_pred ccc
Confidence 974
No 233
>KOG1489|consensus
Probab=99.19 E-value=3.5e-10 Score=84.69 Aligned_cols=122 Identities=20% Similarity=0.271 Sum_probs=85.2
Q ss_pred ccccccceeeeeeCCeEEEEEEEeCCCchhhcc----cchh---hhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHh
Q psy2646 3 LLLPYQTLQNKKEERTRTLIVIWDTAGQERFRT----ITSS---YYRGAHGIIVVYDCTDQ---ETFNNLKQWLEEIDRY 72 (168)
Q Consensus 3 ~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~----~~~~---~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~ 72 (168)
|+.|+++ ++.+++. .++.+-|+||.-+-.+ +.-. .+..++.++||+|++.. +.++.+..+..++..+
T Consensus 230 TL~P~iG--~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~y 306 (366)
T KOG1489|consen 230 TLRPHIG--TVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELY 306 (366)
T ss_pred eeccccc--eeecccc-ceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence 4566666 2333322 3499999999754322 2222 35689999999999988 7788777777776444
Q ss_pred c--CCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHH
Q psy2646 73 A--CDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 73 ~--~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
. ..+.|.++|+||+|+++... ..+.++++.+. -.++++||++++|+.+++..|.+
T Consensus 307 ek~L~~rp~liVaNKiD~~eae~---~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 307 EKGLADRPALIVANKIDLPEAEK---NLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred hhhhccCceEEEEeccCchhHHH---HHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 3 45789999999999863211 22345666554 34999999999999999887754
No 234
>PRK13351 elongation factor G; Reviewed
Probab=99.18 E-value=3.1e-10 Score=95.27 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=65.2
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG 83 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~ 83 (168)
..+|+......+...+..+.||||||+.+|...+..+++.+|++++|+|+++.........| ..+... +.|+++++
T Consensus 57 r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~---~~p~iivi 132 (687)
T PRK13351 57 RGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY---GIPRLIFI 132 (687)
T ss_pred cCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc---CCCEEEEE
Confidence 34566666677777788999999999999888888999999999999999987665544333 333332 68999999
Q ss_pred ecCCCCC
Q psy2646 84 NKNDQTS 90 (168)
Q Consensus 84 nK~Dl~~ 90 (168)
||+|+..
T Consensus 133 NK~D~~~ 139 (687)
T PRK13351 133 NKMDRVG 139 (687)
T ss_pred ECCCCCC
Confidence 9999753
No 235
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.17 E-value=2e-10 Score=92.30 Aligned_cols=115 Identities=17% Similarity=0.119 Sum_probs=72.4
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+......+..+..++.||||||+++|.......+..+|++++|+|++....-..... +..+... . ..|+++++||+
T Consensus 94 Tid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~l~~~l-g-~~~iIvvvNKi 170 (474)
T PRK05124 94 TIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SFIATLL-G-IKHLVVAVNKM 170 (474)
T ss_pred CeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HHHHHHh-C-CCceEEEEEee
Confidence 3444455566667789999999998886544555789999999999986421111111 1112222 1 24789999999
Q ss_pred CCCCCcccCHH----HHHHHHHhc----CCCEEEEeccCCCCHHHH
Q psy2646 87 DQTSKKAVDYQ----VAKEYADHL----KIPFLETSAKNGANVEQA 124 (168)
Q Consensus 87 Dl~~~~~v~~~----~~~~~~~~~----~~~~~~vSa~~~~~i~~i 124 (168)
|+.+...-... +...+.... ..+++++||++|.|+.+.
T Consensus 171 D~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 171 DLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 98642221111 122223332 368999999999998764
No 236
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.16 E-value=1.5e-10 Score=79.86 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=65.3
Q ss_pred hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEE
Q psy2646 33 FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLE 112 (168)
Q Consensus 33 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 112 (168)
|+.+++..++++|++++|+|++++....+ ..+...+. ..+.|+++++||+|+...... .....+....+.++++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence 34566778889999999999987643222 12222222 226899999999998543221 1111233445678999
Q ss_pred EeccCCCCHHHHHHHHHHHHH
Q psy2646 113 TSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 113 vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+||+++.|++++++.+...+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999987765
No 237
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.14 E-value=3.7e-10 Score=88.39 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=90.8
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+-.|...+..+++.+.|.||||+..|..-.+..++..|++++++|+.+. .+-..++.+...... +.+.|||+||+
T Consensus 55 TILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~---gL~PIVVvNKi 130 (603)
T COG1217 55 TILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALAL---GLKPIVVINKI 130 (603)
T ss_pred EEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHc---CCCcEEEEeCC
Confidence 66788888999999999999999999998889999999999999999864 233445555554443 56779999999
Q ss_pred CCCCCcccC-HHHHHHHH-------HhcCCCEEEEeccCCC----------CHHHHHHHHHHHHHH
Q psy2646 87 DQTSKKAVD-YQVAKEYA-------DHLKIPFLETSAKNGA----------NVEQAFLTMATEIKK 134 (168)
Q Consensus 87 Dl~~~~~v~-~~~~~~~~-------~~~~~~~~~vSa~~~~----------~i~~i~~~l~~~~~~ 134 (168)
|.+..+.-. ..+...+. .++++|+++.|+..|. ++.-+|+.+++++..
T Consensus 131 Drp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 131 DRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 987643211 12222322 2356899999999883 466677777766543
No 238
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.14 E-value=3.5e-10 Score=90.32 Aligned_cols=111 Identities=12% Similarity=0.173 Sum_probs=73.3
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC--HH
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD--YQ 97 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~--~~ 97 (168)
..+.|.|+||++.|.......+..+|++++|+|++.........+.+..+... .-.+++++.||+|+.....+. .+
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l--gi~~iIVvlNKiDlv~~~~~~~~~~ 194 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLVKEAQAQDQYE 194 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc--CCCcEEEEEecccccCHHHHHHHHH
Confidence 36899999999988765556678999999999998631111122222222222 124689999999986532221 12
Q ss_pred HHHHHHHh---cCCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 98 VAKEYADH---LKIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 98 ~~~~~~~~---~~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+...+... .+.+++++||.+|.|++.+++.|...+
T Consensus 195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 22233222 257999999999999998888887543
No 239
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.12 E-value=5.4e-10 Score=79.58 Aligned_cols=94 Identities=23% Similarity=0.207 Sum_probs=65.4
Q ss_pred hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHH-----HhcC
Q psy2646 33 FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYA-----DHLK 107 (168)
Q Consensus 33 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~-----~~~~ 107 (168)
+..++..+++++|++++|+|++++..- |...+... ..+.|+++|+||+|+.... ........+. +..+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcC
Confidence 466778899999999999999875421 11222111 2368999999999986532 2223333333 2233
Q ss_pred C---CEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 108 I---PFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 108 ~---~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
. +++++||+++.|++++++++...+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 2 6899999999999999999988764
No 240
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.12 E-value=6.6e-10 Score=86.92 Aligned_cols=113 Identities=17% Similarity=0.075 Sum_probs=75.3
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhc--c-------cchhhhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCc
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFR--T-------ITSSYYRGAHGIIVVYDCTDQET--FNNLKQWLEEIDRYACDNVN 78 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~--~-------~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p 78 (168)
.......-.+..+.+.||+|.+... . .....+..||++|||+|....-+ .+.+..|+. . .+.|
T Consensus 41 r~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr----~--~~kp 114 (444)
T COG1160 41 RIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR----R--SKKP 114 (444)
T ss_pred CccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----h--cCCC
Confidence 3333333334469999999987432 1 12445778999999999987422 233333333 1 2689
Q ss_pred EEEEEecCCCCCCcccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+++|+||+|-... +....-...+|+ ..+.+||.+|.|+.+++++++..+.
T Consensus 115 viLvvNK~D~~~~-----e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 115 VILVVNKIDNLKA-----EELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred EEEEEEcccCchh-----hhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 9999999996421 111122223453 7899999999999999999998873
No 241
>KOG1145|consensus
Probab=99.12 E-value=1.5e-09 Score=86.54 Aligned_cols=111 Identities=18% Similarity=0.211 Sum_probs=81.6
Q ss_pred eeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 12 NKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ---ETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 12 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
.+.+. .+-.+.|.||||+..|..|+..-..-+|.+++|+.++|. ++.+. |......++|+||.+||+|.
T Consensus 194 ~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~Ea-------IkhAk~A~VpiVvAinKiDk 265 (683)
T KOG1145|consen 194 TVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEA-------IKHAKSANVPIVVAINKIDK 265 (683)
T ss_pred EEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHH-------HHHHHhcCCCEEEEEeccCC
Confidence 34444 336789999999999999999989999999999999885 33333 32222347999999999997
Q ss_pred CCCcccCHHHH-HHH------HHhcC--CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 89 TSKKAVDYQVA-KEY------ADHLK--IPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 89 ~~~~~v~~~~~-~~~------~~~~~--~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
++.. .+.. .++ .+.+| ++++++||++|.|++.+-++++-.+.
T Consensus 266 p~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 266 PGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred CCCC---HHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHH
Confidence 7532 2222 222 23444 68999999999999999988875554
No 242
>PRK12289 GTPase RsgA; Reviewed
Probab=99.11 E-value=6e-10 Score=86.24 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=68.3
Q ss_pred cccchhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEE
Q psy2646 34 RTITSSYYRGAHGIIVVYDCTDQE-TFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLE 112 (168)
Q Consensus 34 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 112 (168)
+.+.+..++++|.+++|+|+.+++ +...+..|+..+.. .+.|+++|+||+||...... .........+++++++
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLF 154 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEE
Confidence 345566799999999999998765 44456677665532 36899999999999643221 1222333467889999
Q ss_pred EeccCCCCHHHHHHHHHHH
Q psy2646 113 TSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 113 vSa~~~~~i~~i~~~l~~~ 131 (168)
+||.++.|++++++.+...
T Consensus 155 iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 155 ISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEcCCCCCHHHHhhhhccc
Confidence 9999999999999988653
No 243
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.10 E-value=2.4e-09 Score=83.80 Aligned_cols=129 Identities=19% Similarity=0.165 Sum_probs=86.0
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcc----------cc-hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRT----------IT-SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACD 75 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~----------~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 75 (168)
|+..-...++.+.-.+.+.||+|..+-.. .. ...+..++.+++|+|++.+-+-++. .....+.+.
T Consensus 213 TRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~~--- 288 (444)
T COG1160 213 TRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIEEA--- 288 (444)
T ss_pred cccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHHc---
Confidence 44455555555566788999999654221 11 2356789999999999987554443 233333333
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHH----HhcC-CCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYA----DHLK-IPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~----~~~~-~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
+.++++++||+|+.+......++...-. ...+ .+++++||.++.++.++|+++.........+-
T Consensus 289 g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri 357 (444)
T COG1160 289 GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRI 357 (444)
T ss_pred CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhcccc
Confidence 7899999999998765434444433221 2222 68999999999999999999887766544433
No 244
>PRK12740 elongation factor G; Reviewed
Probab=99.09 E-value=9.9e-10 Score=91.98 Aligned_cols=80 Identities=20% Similarity=0.196 Sum_probs=61.5
Q ss_pred cccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 6 PYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 6 ~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
.|+......+..+++.+.+|||||+.+|...+..++..+|++++++|++..........| ..+.. .+.|+++++||
T Consensus 46 iTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK 121 (668)
T PRK12740 46 ISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNK 121 (668)
T ss_pred CCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEEC
Confidence 456666667777778999999999988877778889999999999999876554433322 33332 36899999999
Q ss_pred CCCC
Q psy2646 86 NDQT 89 (168)
Q Consensus 86 ~Dl~ 89 (168)
+|+.
T Consensus 122 ~D~~ 125 (668)
T PRK12740 122 MDRA 125 (668)
T ss_pred CCCC
Confidence 9975
No 245
>CHL00071 tufA elongation factor Tu
Probab=99.08 E-value=1.3e-09 Score=86.37 Aligned_cols=108 Identities=17% Similarity=0.136 Sum_probs=71.3
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCC
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNKNDQ 88 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl 88 (168)
.....+..+..++.|.||||+.+|.......+..+|++++|+|+..... ......+..+... +.| +|+++||+|+
T Consensus 65 ~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~ 140 (409)
T CHL00071 65 TAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQ 140 (409)
T ss_pred ccEEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCC
Confidence 3344455566788999999998876655667789999999999986422 2233333334333 578 7789999998
Q ss_pred CCCcccC---HHHHHHHHHhcC-----CCEEEEeccCCCCH
Q psy2646 89 TSKKAVD---YQVAKEYADHLK-----IPFLETSAKNGANV 121 (168)
Q Consensus 89 ~~~~~v~---~~~~~~~~~~~~-----~~~~~vSa~~~~~i 121 (168)
.+..... ..++..+....+ ++++++||.+|.++
T Consensus 141 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 141 VDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 7533211 123334444433 68999999999754
No 246
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.08 E-value=1e-09 Score=89.48 Aligned_cols=125 Identities=18% Similarity=0.163 Sum_probs=94.1
Q ss_pred cccceeeeeeCCeEEEEEEEeCCCchhhccc------chhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC
Q psy2646 6 PYQTLQNKKEERTRTLIVIWDTAGQERFRTI------TSSYYR--GAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNV 77 (168)
Q Consensus 6 ~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~------~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 77 (168)
-|+..|+..+..++.++++.|.||.-.+... .+.|+. ..|++|-|+|+++.+. -..+.-++.+. +.
T Consensus 36 vTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeR---nLyltlQLlE~---g~ 109 (653)
T COG0370 36 VTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLER---NLYLTLQLLEL---GI 109 (653)
T ss_pred eeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHH---HHHHHHHHHHc---CC
Confidence 4777888888888888999999997554432 234443 5799999999998643 22223333444 78
Q ss_pred cEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 78 piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
|++++.|++|..+.+.+. .+..++.+.+|+|+++++|++|.|++++.+.+.+....+..
T Consensus 110 p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 110 PMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAESKTT 168 (653)
T ss_pred CeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcccccc
Confidence 999999999987666654 44557888899999999999999999999998876555443
No 247
>PRK00049 elongation factor Tu; Reviewed
Probab=99.08 E-value=2.4e-09 Score=84.51 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=70.4
Q ss_pred cceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEecC
Q psy2646 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKL-LVGNKN 86 (168)
Q Consensus 8 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~ 86 (168)
+......+..++.++.|.||||+.+|.......+..+|++++|+|+..... .....++..+... +.|.+ +++||+
T Consensus 63 i~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~ 138 (396)
T PRK00049 63 INTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKC 138 (396)
T ss_pred EeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeec
Confidence 334445555566788999999998876655566789999999999986422 2233334444333 57876 689999
Q ss_pred CCCCCcccC---HHHHHHHHHhc-----CCCEEEEeccCCCC
Q psy2646 87 DQTSKKAVD---YQVAKEYADHL-----KIPFLETSAKNGAN 120 (168)
Q Consensus 87 Dl~~~~~v~---~~~~~~~~~~~-----~~~~~~vSa~~~~~ 120 (168)
|+.+..... ..+...+.... +++++++||.++.+
T Consensus 139 D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 139 DMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred CCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence 986422211 11233333332 36899999998753
No 248
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.07 E-value=1e-09 Score=87.74 Aligned_cols=114 Identities=20% Similarity=0.207 Sum_probs=74.2
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhcCCCCc-E
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQE---TF---NNLKQWLEEIDRYACDNVN-K 79 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-i 79 (168)
|+......++.+...+.|+||||+.+|.......+..+|++++|+|++... .+ ..+...+..+... ++| +
T Consensus 72 Tid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~i 148 (446)
T PTZ00141 72 TIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQM 148 (446)
T ss_pred eEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeE
Confidence 344555666777789999999999998776677788999999999998642 01 1222222333333 555 6
Q ss_pred EEEEecCCCCC--CcccCH----HHHHHHHHhc-----CCCEEEEeccCCCCHHH
Q psy2646 80 LLVGNKNDQTS--KKAVDY----QVAKEYADHL-----KIPFLETSAKNGANVEQ 123 (168)
Q Consensus 80 ivv~nK~Dl~~--~~~v~~----~~~~~~~~~~-----~~~~~~vSa~~~~~i~~ 123 (168)
|+++||+|... ...-.. +++..+.... +++++++|+.+|.|+.+
T Consensus 149 iv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 149 IVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 79999999532 111111 2222333322 36899999999999864
No 249
>PRK00098 GTPase RsgA; Reviewed
Probab=99.07 E-value=8.1e-10 Score=84.02 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=63.0
Q ss_pred hcCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCC
Q psy2646 41 YRGAHGIIVVYDCTDQETFNN-LKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGA 119 (168)
Q Consensus 41 ~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~ 119 (168)
+.++|++++|+|+++++++.. +..|+..+.. .++|+++|+||+|+..... .........+.++++++++||+++.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 489999999999988765443 4667666543 3689999999999963221 1122334455668899999999999
Q ss_pred CHHHHHHHHH
Q psy2646 120 NVEQAFLTMA 129 (168)
Q Consensus 120 ~i~~i~~~l~ 129 (168)
|++++++.+.
T Consensus 154 gi~~L~~~l~ 163 (298)
T PRK00098 154 GLDELKPLLA 163 (298)
T ss_pred cHHHHHhhcc
Confidence 9999998774
No 250
>PLN03126 Elongation factor Tu; Provisional
Probab=99.06 E-value=3.1e-09 Score=85.41 Aligned_cols=108 Identities=17% Similarity=0.129 Sum_probs=71.4
Q ss_pred ceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCC
Q psy2646 9 TLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNKND 87 (168)
Q Consensus 9 ~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D 87 (168)
......++.++..+.|+|+||+++|.......+..+|++++|+|+.+... .....++..+... ++| +++++||+|
T Consensus 133 ~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~---gi~~iIvvvNK~D 208 (478)
T PLN03126 133 NTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQD 208 (478)
T ss_pred EEEEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEeccc
Confidence 33444455566788999999999887655666788999999999986532 2223334444333 577 788999999
Q ss_pred CCCCcccC---HHHHHHHHHhc-----CCCEEEEeccCCCC
Q psy2646 88 QTSKKAVD---YQVAKEYADHL-----KIPFLETSAKNGAN 120 (168)
Q Consensus 88 l~~~~~v~---~~~~~~~~~~~-----~~~~~~vSa~~~~~ 120 (168)
+.+..... .+++..+.... +++++++||.++.+
T Consensus 209 l~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 209 QVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 86532211 11333444433 46899999998854
No 251
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.06 E-value=1.2e-09 Score=82.64 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=66.2
Q ss_pred hcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCC
Q psy2646 41 YRGAHGIIVVYDCTDQE-TFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGA 119 (168)
Q Consensus 41 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~ 119 (168)
++++|.+++|+|++++. ++..+..|+..+... +.|+++|+||+|+..... ......+....+++++++||+++.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g~ 150 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTGE 150 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCCc
Confidence 88999999999999887 778888888776543 689999999999965311 112223334567899999999999
Q ss_pred CHHHHHHHHHH
Q psy2646 120 NVEQAFLTMAT 130 (168)
Q Consensus 120 ~i~~i~~~l~~ 130 (168)
|+++++..+..
T Consensus 151 gi~~L~~~L~~ 161 (287)
T cd01854 151 GLDELREYLKG 161 (287)
T ss_pred cHHHHHhhhcc
Confidence 99999887763
No 252
>PLN03127 Elongation factor Tu; Provisional
Probab=99.05 E-value=2.5e-09 Score=85.41 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=67.0
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEec
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNK 85 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK 85 (168)
|+......++.++.++.|.||||+.+|.......+..+|++++|+|+++... ......+..+... +.| +|+++||
T Consensus 111 Ti~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~---gip~iIvviNK 186 (447)
T PLN03127 111 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVVFLNK 186 (447)
T ss_pred eeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEe
Confidence 4455556666667789999999998775544445667999999999986422 2223333334333 678 5788999
Q ss_pred CCCCCCcccCH---HHHHHHHHhc-----CCCEEEEeccC
Q psy2646 86 NDQTSKKAVDY---QVAKEYADHL-----KIPFLETSAKN 117 (168)
Q Consensus 86 ~Dl~~~~~v~~---~~~~~~~~~~-----~~~~~~vSa~~ 117 (168)
+|+.+...... .+...+.... .++++++||.+
T Consensus 187 iDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~s 226 (447)
T PLN03127 187 VDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALS 226 (447)
T ss_pred eccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccce
Confidence 99865322111 1222333322 36788888763
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.05 E-value=1.6e-09 Score=90.15 Aligned_cols=113 Identities=17% Similarity=0.146 Sum_probs=71.7
Q ss_pred cceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 8 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
+......+..++.++.|+||||+++|.......+..+|++++|+|++....-. ....+..+... ...+++|++||+|
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~--~~~~iivvvNK~D 168 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLL--GIRHVVLAVNKMD 168 (632)
T ss_pred ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHh--CCCeEEEEEEecc
Confidence 33444455566678899999999887655455688999999999997642211 11112222222 1257899999999
Q ss_pred CCCCcccCH----HHHHHHHHhcC---CCEEEEeccCCCCHHH
Q psy2646 88 QTSKKAVDY----QVAKEYADHLK---IPFLETSAKNGANVEQ 123 (168)
Q Consensus 88 l~~~~~v~~----~~~~~~~~~~~---~~~~~vSa~~~~~i~~ 123 (168)
+.+...-.. .+...+.+.++ .+++++||++|.|+.+
T Consensus 169 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 864211111 12223334444 4699999999999874
No 254
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.02 E-value=2.6e-09 Score=78.09 Aligned_cols=127 Identities=19% Similarity=0.322 Sum_probs=77.3
Q ss_pred ccccceeeeeeC-CeEEEEEEEeCCCchhhc-----ccchhhhcCCcEEEEEEeCCChhhHHH---HHHHHHHHHHhcCC
Q psy2646 5 LPYQTLQNKKEE-RTRTLIVIWDTAGQERFR-----TITSSYYRGAHGIIVVYDCTDQETFNN---LKQWLEEIDRYACD 75 (168)
Q Consensus 5 ~~t~~~~~~~~~-~~~~~l~l~Dt~G~~~~~-----~~~~~~~~~~d~~i~v~d~~~~~s~~~---~~~~~~~i~~~~~~ 75 (168)
-||..+....+. ...+.+.+||.||+..+- ...+..+++++++|||+|+.+.+-.++ +...+..+.+. .+
T Consensus 32 ~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp 110 (232)
T PF04670_consen 32 EPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY-SP 110 (232)
T ss_dssp ----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH-ST
T ss_pred CCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh-CC
Confidence 366666666663 445799999999997442 235668899999999999995443333 33444444444 57
Q ss_pred CCcEEEEEecCCCCCCcc--cCH----HHHHHHHHhcC---CCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTSKKA--VDY----QVAKEYADHLK---IPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~--v~~----~~~~~~~~~~~---~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+..+.|+++|+|+..+.. ... +.+.+.....+ +.++.+|.-+ ..+.++|..++..+.
T Consensus 111 ~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 111 NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence 899999999999854211 111 12223344445 6788888776 578888887777655
No 255
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.02 E-value=4.4e-09 Score=82.57 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=84.4
Q ss_pred cccceeeeeeCCeEEEEEEEeCCCchhhcccc--------hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC
Q psy2646 6 PYQTLQNKKEERTRTLIVIWDTAGQERFRTIT--------SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNV 77 (168)
Q Consensus 6 ~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 77 (168)
.|+..-...++-+++++.+.||+|..+-.... ...++.||.+++|+|.+.+.+-.+.. .+. ....+.
T Consensus 251 TTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~-~~~----~~~~~~ 325 (454)
T COG0486 251 TTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLA-LIE----LLPKKK 325 (454)
T ss_pred CccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH-HHH----hcccCC
Confidence 35666667777777899999999976543322 34578899999999999852222211 111 124478
Q ss_pred cEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 78 piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
|+++|.||.|+....... .+....+.+++.+|++++.|++.+.+.+...+...
T Consensus 326 ~~i~v~NK~DL~~~~~~~-----~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 326 PIIVVLNKADLVSKIELE-----SEKLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred CEEEEEechhcccccccc-----hhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 999999999997653321 11112245799999999999999999998887766
No 256
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.01 E-value=1.6e-09 Score=81.30 Aligned_cols=80 Identities=24% Similarity=0.229 Sum_probs=59.0
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+......+..++.++.||||||...|...+..+++.+|++|+|+|+.+...-. ...++..+... +.|+++++||+
T Consensus 51 ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~~---~~p~ivviNK~ 126 (270)
T cd01886 51 TIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADRY---NVPRIAFVNKM 126 (270)
T ss_pred CeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHHc---CCCEEEEEECC
Confidence 344445555566789999999999888888888999999999999998753222 22333333333 68999999999
Q ss_pred CCCC
Q psy2646 87 DQTS 90 (168)
Q Consensus 87 Dl~~ 90 (168)
|+.+
T Consensus 127 D~~~ 130 (270)
T cd01886 127 DRTG 130 (270)
T ss_pred CCCC
Confidence 9865
No 257
>COG2262 HflX GTPases [General function prediction only]
Probab=99.00 E-value=9.6e-09 Score=79.50 Aligned_cols=111 Identities=20% Similarity=0.208 Sum_probs=77.9
Q ss_pred EEEEEEEeCCCchh---------hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 19 RTLIVIWDTAGQER---------FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
+..+.+-||-|--+ |.+. -.-...+|.++.|+|+++++....+......+.+......|+++|.||+|+.
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~AFksT-LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~ 317 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEAFKST-LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLL 317 (411)
T ss_pred CceEEEecCccCcccCChHHHHHHHHH-HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccccc
Confidence 45688999998532 2221 1225679999999999999766666655555555544569999999999975
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
.... ....+..... ..+.+||++|.|++.+.+.|...+...
T Consensus 318 ~~~~----~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 318 EDEE----ILAELERGSP-NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred Cchh----hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 4322 1112222222 589999999999999999998887754
No 258
>PRK13768 GTPase; Provisional
Probab=98.99 E-value=6.8e-09 Score=77.21 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=69.5
Q ss_pred EEEEEeCCCchhh---cccchhhhcC-----CcEEEEEEeCCChhhHHHH--HHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 21 LIVIWDTAGQERF---RTITSSYYRG-----AHGIIVVYDCTDQETFNNL--KQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 21 ~l~l~Dt~G~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
.+.+||+||+.++ +..+..+++. ++++++++|+.......+. ..|+...... ..+.|+++|+||+|+.+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 6889999998763 3344333333 8999999999654322221 1222222211 23789999999999865
Q ss_pred CcccCHHHHHH----------------------------HHHhcC--CCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 91 KKAVDYQVAKE----------------------------YADHLK--IPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 91 ~~~v~~~~~~~----------------------------~~~~~~--~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
..... .... .....+ .+++++|+.++.|++++++++.+.+
T Consensus 177 ~~~~~--~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEELE--RILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhHH--HHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 43221 1111 111223 5889999999999999999987664
No 259
>KOG0090|consensus
Probab=98.99 E-value=6.6e-09 Score=73.80 Aligned_cols=110 Identities=22% Similarity=0.315 Sum_probs=75.0
Q ss_pred EEEEEeCCCchhhcccchhhhc---CCcEEEEEEeCC-ChhhHHHHHHHHHHHHH-h--cCCCCcEEEEEecCCCCCCcc
Q psy2646 21 LIVIWDTAGQERFRTITSSYYR---GAHGIIVVYDCT-DQETFNNLKQWLEEIDR-Y--ACDNVNKLLVGNKNDQTSKKA 93 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~~~~~~---~~d~~i~v~d~~-~~~s~~~~~~~~~~i~~-~--~~~~~piivv~nK~Dl~~~~~ 93 (168)
.+.+.|.||+.+.+.-...+++ .+-++|||+|.. .+....++.+++..+.. . ...+.|++++.||.|+...+.
T Consensus 83 ~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 83 NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKT 162 (238)
T ss_pred ceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCc
Confidence 4889999999998776666666 799999999986 34456666666666533 2 245799999999999863221
Q ss_pred cC------HHHHHH------------------------------HH--HhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 94 VD------YQVAKE------------------------------YA--DHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 94 v~------~~~~~~------------------------------~~--~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
.. ..++.. |. +...+.+.++|++++ +++++-+|+.+.
T Consensus 163 ~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 163 AEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 00 001100 00 011246889999988 899999998764
No 260
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.99 E-value=5.7e-09 Score=78.23 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=72.6
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+......++.+++.+.+|||||..+|...+..+++.+|++++|+|+++......... +..+.. .+.|+++++||+
T Consensus 51 ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~~~~~---~~~p~iivvNK~ 126 (268)
T cd04170 51 SISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKL-WEFADE---AGIPRIIFINKM 126 (268)
T ss_pred cccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHHH---cCCCEEEEEECC
Confidence 4444455556667889999999998887778889999999999999997644433222 223332 268999999999
Q ss_pred CCCCCcccCHHHHHHHHHhcCCCEEEE--eccCCCCHHHHH
Q psy2646 87 DQTSKKAVDYQVAKEYADHLKIPFLET--SAKNGANVEQAF 125 (168)
Q Consensus 87 Dl~~~~~v~~~~~~~~~~~~~~~~~~v--Sa~~~~~i~~i~ 125 (168)
|+.... . ......+.+.++.+++.+ ...++.++..+.
T Consensus 127 D~~~~~-~-~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~v 165 (268)
T cd04170 127 DRERAD-F-DKTLAALQEAFGRPVVPLQLPIGEGDDFKGVV 165 (268)
T ss_pred ccCCCC-H-HHHHHHHHHHhCCCeEEEEecccCCCceeEEE
Confidence 987531 1 122334444455444433 345544443333
No 261
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.97 E-value=5.6e-09 Score=70.54 Aligned_cols=99 Identities=20% Similarity=0.184 Sum_probs=67.8
Q ss_pred EEEeCCCch----hhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHH
Q psy2646 23 VIWDTAGQE----RFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQV 98 (168)
Q Consensus 23 ~l~Dt~G~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~ 98 (168)
.+.||||.- .|....-....+||.++++.|++++.+.-- ..+.. .-..|+|-|+||+|+... ....+.
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa~--~f~~pvIGVITK~Dl~~~-~~~i~~ 110 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFAS--MFNKPVIGVITKIDLPSD-DANIER 110 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhhc--ccCCCEEEEEECccCccc-hhhHHH
Confidence 469999953 233333445668999999999998643111 01111 115899999999999832 223455
Q ss_pred HHHHHHhcCC-CEEEEeccCCCCHHHHHHHHH
Q psy2646 99 AKEYADHLKI-PFLETSAKNGANVEQAFLTMA 129 (168)
Q Consensus 99 ~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~ 129 (168)
+.++.+..|+ .+|++|+.+|+|++++.++|-
T Consensus 111 a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 111 AKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 5566666675 679999999999999998773
No 262
>PRK12288 GTPase RsgA; Reviewed
Probab=98.97 E-value=6.2e-09 Score=80.58 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=66.7
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc-CHHHHHHHHHhcCCCEEEEeccCCC
Q psy2646 41 YRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAV-DYQVAKEYADHLKIPFLETSAKNGA 119 (168)
Q Consensus 41 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v-~~~~~~~~~~~~~~~~~~vSa~~~~ 119 (168)
..++|.+++|++.+...++..+..|+..+.. .++|+++|+||+|+...... ............+++++++||.++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999877889999999876543 36899999999999653211 1122223334567899999999999
Q ss_pred CHHHHHHHHHHH
Q psy2646 120 NVEQAFLTMATE 131 (168)
Q Consensus 120 ~i~~i~~~l~~~ 131 (168)
|++++++.+...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999988653
No 263
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.96 E-value=1.6e-08 Score=76.57 Aligned_cols=131 Identities=15% Similarity=0.178 Sum_probs=88.5
Q ss_pred ccccccceeeeeeCCeEEEEEEEeCCCchhhcc----cchhh---hcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHh
Q psy2646 3 LLLPYQTLQNKKEERTRTLIVIWDTAGQERFRT----ITSSY---YRGAHGIIVVYDCTDQE---TFNNLKQWLEEIDRY 72 (168)
Q Consensus 3 ~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~----~~~~~---~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~ 72 (168)
|+.|..+.-.+ ...-.+.+-|+||.-+-.+ +...| +.++.++++|+|++..+ ..++...+..++..+
T Consensus 193 TL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y 269 (369)
T COG0536 193 TLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY 269 (369)
T ss_pred cccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHh
Confidence 45566665544 3334689999999754322 33333 56799999999998543 466666666666555
Q ss_pred c--CCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEE-EEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 73 A--CDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFL-ETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 73 ~--~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~-~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
. ..+.|.+||+||+|+....+........+.+..++..+ ++||.++.|++++...+...+....
T Consensus 270 ~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 270 SPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred hHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 3 45789999999999654333222333344444454322 2999999999999999998888775
No 264
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.93 E-value=5.8e-09 Score=87.61 Aligned_cols=81 Identities=22% Similarity=0.191 Sum_probs=60.5
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+......+..++.++.||||||+.+|...+..+++.+|++++|+|+.+....... .++..+... +.|+++++||+
T Consensus 62 ti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~---~~p~ivviNK~ 137 (689)
T TIGR00484 62 TITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY---EVPRIAFVNKM 137 (689)
T ss_pred CEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc---CCCEEEEEECC
Confidence 34445555666678999999999998877788899999999999999876444433 233333333 68999999999
Q ss_pred CCCCC
Q psy2646 87 DQTSK 91 (168)
Q Consensus 87 Dl~~~ 91 (168)
|+...
T Consensus 138 D~~~~ 142 (689)
T TIGR00484 138 DKTGA 142 (689)
T ss_pred CCCCC
Confidence 98753
No 265
>PRK12739 elongation factor G; Reviewed
Probab=98.93 E-value=1.2e-08 Score=85.72 Aligned_cols=79 Identities=20% Similarity=0.183 Sum_probs=57.7
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+......+..++.++.|+||||+..|...+...++.+|++|+|+|+.+...-.+ ...+..+.. .+.|+++++||+
T Consensus 60 ti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~ 135 (691)
T PRK12739 60 TITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKM 135 (691)
T ss_pred CccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECC
Confidence 3344445555567789999999998887778888999999999999987543222 233333333 368999999999
Q ss_pred CCC
Q psy2646 87 DQT 89 (168)
Q Consensus 87 Dl~ 89 (168)
|+.
T Consensus 136 D~~ 138 (691)
T PRK12739 136 DRI 138 (691)
T ss_pred CCC
Confidence 985
No 266
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.91 E-value=5e-09 Score=82.55 Aligned_cols=131 Identities=17% Similarity=0.145 Sum_probs=93.2
Q ss_pred cccccccceeeeeeCC-eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHH
Q psy2646 2 RLLLPYQTLQNKKEER-TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ----------ETFNNLKQWLEEID 70 (168)
Q Consensus 2 ~~~~~t~~~~~~~~~~-~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~ 70 (168)
|+..+|.|+....+.. +...+.++|++|+...+.-|..++.++++||||+++++- +.+.+...++..+.
T Consensus 217 ~~r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~ 296 (389)
T PF00503_consen 217 RCRVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESIC 296 (389)
T ss_dssp HS----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHH
T ss_pred eecCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHH
Confidence 5667999999999987 889999999999988888999999999999999998742 34666666777764
Q ss_pred Hhc-CCCCcEEEEEecCCCCC-----Cc----------c---cCHHHHHHHHHh------------cCCCEEEEeccCCC
Q psy2646 71 RYA-CDNVNKLLVGNKNDQTS-----KK----------A---VDYQVAKEYADH------------LKIPFLETSAKNGA 119 (168)
Q Consensus 71 ~~~-~~~~piivv~nK~Dl~~-----~~----------~---v~~~~~~~~~~~------------~~~~~~~vSa~~~~ 119 (168)
... ..+.|++|+.||.|+.. .. + -....+..+... ..+.++.++|.+..
T Consensus 297 ~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~ 376 (389)
T PF00503_consen 297 NNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTE 376 (389)
T ss_dssp TSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHH
T ss_pred hCcccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccH
Confidence 433 35799999999999621 10 0 123344443321 12346688999999
Q ss_pred CHHHHHHHHHHHH
Q psy2646 120 NVEQAFLTMATEI 132 (168)
Q Consensus 120 ~i~~i~~~l~~~~ 132 (168)
++..+|..+.+.+
T Consensus 377 ~~~~v~~~v~~~i 389 (389)
T PF00503_consen 377 NIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcC
Confidence 9999999887654
No 267
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.91 E-value=1.4e-08 Score=77.33 Aligned_cols=113 Identities=18% Similarity=0.168 Sum_probs=78.0
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+..-...|...+-+|.+-||||++.|......-...||+.|+++|+... -.+..+. ...|.... .=.-+++.+||+
T Consensus 73 TIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrR-Hs~I~sLL-GIrhvvvAVNKm 149 (431)
T COG2895 73 TIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRR-HSFIASLL-GIRHVVVAVNKM 149 (431)
T ss_pred eEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHH-HHHHHHHh-CCcEEEEEEeee
Confidence 55666677777788999999999999988777778889999999999643 1222221 12221111 124578999999
Q ss_pred CCCCCcccCHH----HHHHHHHhcC---CCEEEEeccCCCCHH
Q psy2646 87 DQTSKKAVDYQ----VAKEYADHLK---IPFLETSAKNGANVE 122 (168)
Q Consensus 87 Dl~~~~~v~~~----~~~~~~~~~~---~~~~~vSa~~~~~i~ 122 (168)
||.+-.+-..+ +-..|+..++ ..++++||..|.|+-
T Consensus 150 DLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 150 DLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred cccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 99864332222 2335677776 479999999999864
No 268
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.91 E-value=9.1e-09 Score=83.73 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=59.2
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+......++.+++.+.||||||+.+|......+++.+|++|+|+|+++... .....++..... .+.|+++++||+
T Consensus 67 si~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKi 142 (527)
T TIGR00503 67 SITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKL 142 (527)
T ss_pred cEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECc
Confidence 3445566777888999999999998887766667899999999999987421 122334433322 368999999999
Q ss_pred CCCC
Q psy2646 87 DQTS 90 (168)
Q Consensus 87 Dl~~ 90 (168)
|+..
T Consensus 143 D~~~ 146 (527)
T TIGR00503 143 DRDI 146 (527)
T ss_pred cccC
Confidence 9864
No 269
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.89 E-value=2.2e-08 Score=76.71 Aligned_cols=54 Identities=13% Similarity=0.033 Sum_probs=37.8
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHHHhc-CCCEEEEeccCCCCHHHHHH-HHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYADHL-KIPFLETSAKNGANVEQAFL-TMATEIK 133 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~i~~-~l~~~~~ 133 (168)
.+|+|+++||.|+...... ...+.... ..+++.+||+.+.++.++.+ .+...+.
T Consensus 214 ~KPvI~VlNK~Dl~~~~~~----~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP 269 (318)
T cd01899 214 SKPMVIAANKADIPDAENN----ISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDP 269 (318)
T ss_pred CCcEEEEEEHHHccChHHH----HHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence 5799999999997533221 11222222 46799999999999999887 5776654
No 270
>KOG1707|consensus
Probab=98.87 E-value=3.4e-09 Score=84.87 Aligned_cols=119 Identities=24% Similarity=0.257 Sum_probs=89.4
Q ss_pred CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcC--CCCcEEEEEecCCCCCCc
Q psy2646 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLK-QWLEEIDRYAC--DNVNKLLVGNKNDQTSKK 92 (168)
Q Consensus 16 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~--~~~piivv~nK~Dl~~~~ 92 (168)
....+...+.||+..+.-......-++.||++.++|+.+++.+++.+. +|+..+.+..+ .++|||+||||.|+....
T Consensus 52 tPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~ 131 (625)
T KOG1707|consen 52 TPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNE 131 (625)
T ss_pred CcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccc
Confidence 355567899999866554444466789999999999999999999884 79999866531 479999999999987544
Q ss_pred ccCHHH-HHHHHHhcC--CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 93 AVDYQV-AKEYADHLK--IPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 93 ~v~~~~-~~~~~~~~~--~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
..+.+. ..-+...+. -..++|||++..++.++|...-+.+..
T Consensus 132 ~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 132 NNSDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred ccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeec
Confidence 432222 333333332 268999999999999999988777665
No 271
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.87 E-value=1.3e-08 Score=79.38 Aligned_cols=95 Identities=27% Similarity=0.354 Sum_probs=68.4
Q ss_pred chhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHH----HHHh
Q psy2646 30 QERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKE----YADH 105 (168)
Q Consensus 30 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~----~~~~ 105 (168)
.++|..+...+++.++++++|+|+.+.+ ..|...+.+.. .+.|+++|+||+|+... ....+.... +++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 4567778888889999999999997653 12334443332 25799999999998653 333333333 3555
Q ss_pred cCC---CEEEEeccCCCCHHHHHHHHHHH
Q psy2646 106 LKI---PFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 106 ~~~---~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
+++ .++++||+++.|++++|+.+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 665 48999999999999999998654
No 272
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.3e-08 Score=78.79 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=79.3
Q ss_pred ccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCc
Q psy2646 5 LPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQE---TFN---NLKQWLEEIDRYACDNVN 78 (168)
Q Consensus 5 ~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p 78 (168)
--|+......++.+.+.+.|.|+||+..|-.-.-.-...||+.|||+|+.+.+ .|. ..+.-. .+.+. ..-.-
T Consensus 70 GvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~t-lGi~~ 147 (428)
T COG5256 70 GVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLART-LGIKQ 147 (428)
T ss_pred ceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHh-cCCce
Confidence 34677778888888889999999998877665555677899999999998752 111 111111 11111 11356
Q ss_pred EEEEEecCCCCCCcccCHHHH----HHHHHhcC-----CCEEEEeccCCCCHHHH
Q psy2646 79 KLLVGNKNDQTSKKAVDYQVA----KEYADHLK-----IPFLETSAKNGANVEQA 124 (168)
Q Consensus 79 iivv~nK~Dl~~~~~v~~~~~----~~~~~~~~-----~~~~~vSa~~~~~i~~i 124 (168)
+||++||+|+.+.++-..++. ..+.+..| ++|+++|+..|+|+.+.
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 899999999986544333332 23444443 57999999999998653
No 273
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.85 E-value=8.6e-08 Score=67.87 Aligned_cols=120 Identities=13% Similarity=0.197 Sum_probs=80.4
Q ss_pred cccceeeeeeCCeEEEEEEEeCCC----------chhhcccchhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHh
Q psy2646 6 PYQTLQNKKEERTRTLIVIWDTAG----------QERFRTITSSYYRG---AHGIIVVYDCTDQETFNNLKQWLEEIDRY 72 (168)
Q Consensus 6 ~t~~~~~~~~~~~~~~l~l~Dt~G----------~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 72 (168)
-|+...++.++++ +.+.|.|| ++.+..+...|+.. -.++++++|+..+..-.+. .+++.+...
T Consensus 59 rTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~ 134 (200)
T COG0218 59 RTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL 134 (200)
T ss_pred ccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc
Confidence 3666777777765 88999998 35566666777764 5689999999876443332 344444433
Q ss_pred cCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhc----CCC--EEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 73 ACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHL----KIP--FLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 73 ~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~--~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
+.|++|++||+|..+..... ......++.+ ... ++..|+.++.|++++...+...+.
T Consensus 135 ---~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 135 ---GIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ---CCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 79999999999986543222 1112222222 222 888999999999999888877654
No 274
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.83 E-value=4.5e-08 Score=73.89 Aligned_cols=124 Identities=19% Similarity=0.123 Sum_probs=84.1
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchh-----hcccch---hhhc-CCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQER-----FRTITS---SYYR-GAHGIIVVYDCTDQ--ETFNNLKQWLEEIDRYACD 75 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~-----~~~~~~---~~~~-~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~ 75 (168)
|-++...+++.+..++|+.||||.-+ .+..-. ..++ =.++++|++|.+.. .+.+....++..+...-
T Consensus 202 TK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f-- 279 (346)
T COG1084 202 TKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF-- 279 (346)
T ss_pred ccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--
Confidence 45566666777778999999999632 111111 1122 26789999999854 67888888888886653
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHHHhcC-CCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYADHLK-IPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+.|+++|.||+|+.....+.... .....-+ .....+++..+.+++.+-..+...+.+
T Consensus 280 ~~p~v~V~nK~D~~~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 280 KAPIVVVINKIDIADEEKLEEIE--ASVLEEGGEEPLKISATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred CCCeEEEEecccccchhHHHHHH--HHHHhhccccccceeeeehhhHHHHHHHHHHHhhc
Confidence 48999999999987544443222 2233333 457888999999988877777666443
No 275
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.79 E-value=1.1e-08 Score=71.95 Aligned_cols=74 Identities=24% Similarity=0.368 Sum_probs=51.5
Q ss_pred eEEEEEEEeCCCchhhccc-chh--hhcCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhc---CCCCcEEEEEecCCCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTI-TSS--YYRGAHGIIVVYDCTD-QETFNNLKQWLEEIDRYA---CDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~-~~~--~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~---~~~~piivv~nK~Dl~~ 90 (168)
..-.+.+.|+||+.+.+.. ... +...+.++|||+|.+. ...+.++.+++..+.... ...+|++|++||+|+..
T Consensus 47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 3447899999999988763 333 5888999999999984 445667766666653322 45799999999999976
Q ss_pred C
Q psy2646 91 K 91 (168)
Q Consensus 91 ~ 91 (168)
.
T Consensus 127 A 127 (181)
T PF09439_consen 127 A 127 (181)
T ss_dssp -
T ss_pred c
Confidence 4
No 276
>KOG1423|consensus
Probab=98.78 E-value=1e-07 Score=71.40 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=74.6
Q ss_pred eeeeeCCeEEEEEEEeCCCchh------hcc------cchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc
Q psy2646 11 QNKKEERTRTLIVIWDTAGQER------FRT------ITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN 78 (168)
Q Consensus 11 ~~~~~~~~~~~l~l~Dt~G~~~------~~~------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 78 (168)
....+..+..++.|+||||.-. +.. .....+..||.+++|+|+++....-. ...+..+..+. ..|
T Consensus 111 ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ip 187 (379)
T KOG1423|consen 111 ILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIP 187 (379)
T ss_pred eeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCC
Confidence 3344456778999999999421 110 12345678999999999996321111 11233333333 689
Q ss_pred EEEEEecCCCCCCcc-------------cCHHHHHHHHHhcCC----------------CEEEEeccCCCCHHHHHHHHH
Q psy2646 79 KLLVGNKNDQTSKKA-------------VDYQVAKEYADHLKI----------------PFLETSAKNGANVEQAFLTMA 129 (168)
Q Consensus 79 iivv~nK~Dl~~~~~-------------v~~~~~~~~~~~~~~----------------~~~~vSa~~~~~i~~i~~~l~ 129 (168)
-+++.||.|...++. ++.....-..+.... .+|.+||+.|.|++++-++|+
T Consensus 188 s~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLm 267 (379)
T KOG1423|consen 188 SILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLM 267 (379)
T ss_pred ceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHH
Confidence 999999999754332 111011111111112 389999999999999999999
Q ss_pred HHHHH
Q psy2646 130 TEIKK 134 (168)
Q Consensus 130 ~~~~~ 134 (168)
.++..
T Consensus 268 sqa~~ 272 (379)
T KOG1423|consen 268 SQAPP 272 (379)
T ss_pred hcCCC
Confidence 87643
No 277
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.75 E-value=6.5e-08 Score=66.78 Aligned_cols=91 Identities=15% Similarity=0.035 Sum_probs=58.1
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCC
Q psy2646 40 YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGA 119 (168)
Q Consensus 40 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~ 119 (168)
.++++|.+++|+|+.++..-. ...+...+... ..+.|+++|+||+|+.....+ ......+.+.+....+.+||+.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence 478899999999999863211 12223333222 335899999999999643221 111222323222335789999999
Q ss_pred CHHHHHHHHHHHHH
Q psy2646 120 NVEQAFLTMATEIK 133 (168)
Q Consensus 120 ~i~~i~~~l~~~~~ 133 (168)
|++++++.+...+.
T Consensus 82 ~~~~L~~~l~~~~~ 95 (157)
T cd01858 82 GKGSLIQLLRQFSK 95 (157)
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999976643
No 278
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.70 E-value=4e-07 Score=65.21 Aligned_cols=109 Identities=12% Similarity=0.165 Sum_probs=66.7
Q ss_pred EEEEEeCCCchhhcccchhh-----hcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEecCCCCCCcc-
Q psy2646 21 LIVIWDTAGQERFRTITSSY-----YRGAHGIIVVYDCTDQETFNNL-KQWLEEIDRYACDNVNKLLVGNKNDQTSKKA- 93 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~- 93 (168)
.+.+|||||..........| +..+|+++++.+.. +... ..|+..+... +.|+++|+||+|+.....
T Consensus 53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~----~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~ 125 (197)
T cd04104 53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISSTR----FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQ 125 (197)
T ss_pred CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCCC----CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhh
Confidence 68999999975432222223 56789888875432 2222 3445555444 579999999999842111
Q ss_pred ---c---CHHH----HHHHH----HhcC---CCEEEEecc--CCCCHHHHHHHHHHHHHHHh
Q psy2646 94 ---V---DYQV----AKEYA----DHLK---IPFLETSAK--NGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 94 ---v---~~~~----~~~~~----~~~~---~~~~~vSa~--~~~~i~~i~~~l~~~~~~~~ 136 (168)
. ..++ ..+.+ ...+ -++|.+|+. .+.++..+.+.+.+.+.+.+
T Consensus 126 ~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 126 RSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 0 0111 11111 1212 378899998 57899999999998887644
No 279
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.67 E-value=1.5e-07 Score=64.82 Aligned_cols=84 Identities=19% Similarity=0.122 Sum_probs=55.0
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHH
Q psy2646 45 HGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQA 124 (168)
Q Consensus 45 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i 124 (168)
|.+++|+|+.++.+.... ++.. ......+.|+++|+||+|+.+...+. .....+....+..++.+||.++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPKEVLR-KWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCHHHHH-HHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 789999999887554322 2221 11112368999999999985432211 1111233333567899999999999999
Q ss_pred HHHHHHHH
Q psy2646 125 FLTMATEI 132 (168)
Q Consensus 125 ~~~l~~~~ 132 (168)
++.+....
T Consensus 77 ~~~i~~~~ 84 (155)
T cd01849 77 ESAFTKQT 84 (155)
T ss_pred HHHHHHHh
Confidence 99887654
No 280
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.61 E-value=1.4e-07 Score=64.05 Aligned_cols=76 Identities=17% Similarity=0.213 Sum_probs=51.4
Q ss_pred hhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEecc
Q psy2646 39 SYYRGAHGIIVVYDCTDQETFN--NLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAK 116 (168)
Q Consensus 39 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~ 116 (168)
..+..+|++++|+|+.++.+.. .+..|+... ..+.|+++++||+|+.....+ ....++.+..+..++++||.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~~--~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQR--KAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHHH--HHHHHHHHhcCCeEEEEEec
Confidence 4578999999999998875533 333333322 236899999999998543221 23334445556789999999
Q ss_pred CCCC
Q psy2646 117 NGAN 120 (168)
Q Consensus 117 ~~~~ 120 (168)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8754
No 281
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.60 E-value=9.8e-08 Score=70.34 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=58.9
Q ss_pred EEEEEeCCCchhhcccchhhh--------cCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 21 LIVIWDTAGQERFRTITSSYY--------RGAHGIIVVYDCTDQE-TFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
.+.++|||||.++...|...- ...-++++++|..... ....+..++..+......+.|.+.|.||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 678999999988755554433 4566899999987432 2222333333332211237999999999999762
Q ss_pred cc---cC----------------HHHHHHHH---HhcC-C-CEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 92 KA---VD----------------YQVAKEYA---DHLK-I-PFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 92 ~~---v~----------------~~~~~~~~---~~~~-~-~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
.. +. ......++ ..++ . .++.+|+.+++|+.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 20 00 00001112 1223 3 799999999999999998887654
No 282
>KOG1144|consensus
Probab=98.60 E-value=2.1e-07 Score=76.79 Aligned_cols=108 Identities=20% Similarity=0.291 Sum_probs=75.0
Q ss_pred EEEEeCCCchhhcccchhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC-Ccc----
Q psy2646 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTD---QETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS-KKA---- 93 (168)
Q Consensus 22 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~-~~~---- 93 (168)
+.++||||++.|..+.......||..|+|+|+-. +++.+.+. .+. ..+.|+||..||+|... .+.
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~----lLR---~rktpFivALNKiDRLYgwk~~p~~ 614 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN----LLR---MRKTPFIVALNKIDRLYGWKSCPNA 614 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH----HHH---hcCCCeEEeehhhhhhcccccCCCc
Confidence 6789999999999999999999999999999975 34444332 121 23799999999999531 111
Q ss_pred -cCH------------------HHHHHHHHh------------cC--CCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 94 -VDY------------------QVAKEYADH------------LK--IPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 94 -v~~------------------~~~~~~~~~------------~~--~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
+.. ..+.+|+.+ ++ +.++++||.+|.||-+++.+|+.......
T Consensus 615 ~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 615 PIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 000 011122211 11 36889999999999999999987665544
No 283
>PRK00007 elongation factor G; Reviewed
Probab=98.57 E-value=3.5e-07 Score=77.03 Aligned_cols=106 Identities=23% Similarity=0.244 Sum_probs=67.2
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+......+..++.++.|.||||+..|..-....+..+|++|+|+|+.......+.. .+..+... +.|+++++||+
T Consensus 62 ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~~---~~p~iv~vNK~ 137 (693)
T PRK00007 62 TITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADKY---KVPRIAFVNKM 137 (693)
T ss_pred CEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHHc---CCCEEEEEECC
Confidence 333444555556778999999999877655566788999999999988654333322 33333333 68999999999
Q ss_pred CCCCCcccCHHHHHHHHHhcCC----CEEEEeccCC
Q psy2646 87 DQTSKKAVDYQVAKEYADHLKI----PFLETSAKNG 118 (168)
Q Consensus 87 Dl~~~~~v~~~~~~~~~~~~~~----~~~~vSa~~~ 118 (168)
|+.+.. . ......+.+.++. ..+++|+..+
T Consensus 138 D~~~~~-~-~~~~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 138 DRTGAD-F-YRVVEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred CCCCCC-H-HHHHHHHHHHhCCCeeeEEecCccCCc
Confidence 987533 1 1222333333332 3456666554
No 284
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.57 E-value=6.1e-07 Score=67.59 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=58.9
Q ss_pred eCCeEEEEEEEeCCCchhh--------------------------cccchhhhc--CCcEEEEEEeCCChhhHHHHHHHH
Q psy2646 15 EERTRTLIVIWDTAGQERF--------------------------RTITSSYYR--GAHGIIVVYDCTDQETFNNLKQWL 66 (168)
Q Consensus 15 ~~~~~~~l~l~Dt~G~~~~--------------------------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~ 66 (168)
.++..+.+.||||||.... ...+...+. .+|+++++++.+.......-..++
T Consensus 58 ~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~l 137 (276)
T cd01850 58 ENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFM 137 (276)
T ss_pred ECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHH
Confidence 3567789999999994221 111112333 478889998877521111112233
Q ss_pred HHHHHhcCCCCcEEEEEecCCCCCCcc--cCHHHHHHHHHhcCCCEEEEecc
Q psy2646 67 EEIDRYACDNVNKLLVGNKNDQTSKKA--VDYQVAKEYADHLKIPFLETSAK 116 (168)
Q Consensus 67 ~~i~~~~~~~~piivv~nK~Dl~~~~~--v~~~~~~~~~~~~~~~~~~vSa~ 116 (168)
..+. ..+|+++|+||+|+....+ .......+.+..+++++|.....
T Consensus 138 k~l~----~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 138 KRLS----KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHh----ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 3332 2589999999999865322 22344556677788888876653
No 285
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=2.1e-07 Score=70.22 Aligned_cols=114 Identities=19% Similarity=0.254 Sum_probs=73.7
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc--CHH
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAV--DYQ 97 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v--~~~ 97 (168)
-.+.|.|.||++-+-...-.-..-.|+.+||+.++.+-.--...+-+..+.-. .-..++++-||+|+...+.. ..+
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHH
Confidence 36889999999854322122223368999999998763322233222222222 12568999999999764322 234
Q ss_pred HHHHHHHhc---CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 98 VAKEYADHL---KIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 98 ~~~~~~~~~---~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
++.+|.+.. +.|++++||..+.||+.+++++...+...
T Consensus 164 qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 164 QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 455555432 47999999999999999999888776543
No 286
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.56 E-value=1.3e-07 Score=79.91 Aligned_cols=72 Identities=25% Similarity=0.240 Sum_probs=53.8
Q ss_pred eeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 14 KEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 14 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+++.++++.||||||+.+|.......++.+|++|+|+|+......+....| ..... .+.|+++++||+|..
T Consensus 80 ~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 80 EYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK---ENVKPVLFINKVDRL 151 (720)
T ss_pred eecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH---cCCCEEEEEEChhcc
Confidence 3678889999999999998877777889999999999999874322222222 22222 357889999999975
No 287
>KOG0458|consensus
Probab=98.56 E-value=4.3e-07 Score=73.05 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=82.0
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHH-------HHHHHHHHHHhcCCC
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNN-------LKQWLEEIDRYACDN 76 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-------~~~~~~~i~~~~~~~ 76 (168)
.--|+.++..+++.....+.|.|.||+..|.+..-.-...||+.|||+|++-. .|+. +++....+... + -
T Consensus 239 rGvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~L-g-i 315 (603)
T KOG0458|consen 239 RGVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSL-G-I 315 (603)
T ss_pred cceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHc-C-c
Confidence 34578888899998889999999999888877655667789999999999853 2332 22222222222 1 3
Q ss_pred CcEEEEEecCCCCCCcccCHHHHH----HHH-HhcC-----CCEEEEeccCCCCHHHH
Q psy2646 77 VNKLLVGNKNDQTSKKAVDYQVAK----EYA-DHLK-----IPFLETSAKNGANVEQA 124 (168)
Q Consensus 77 ~piivv~nK~Dl~~~~~v~~~~~~----~~~-~~~~-----~~~~~vSa~~~~~i~~i 124 (168)
.-+||++||+|+.+..+-..+++. .|. +..| +.|++||+.+|+|+...
T Consensus 316 ~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 316 SQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 568999999999876554444433 233 2223 58999999999997543
No 288
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.51 E-value=3.8e-07 Score=63.85 Aligned_cols=89 Identities=19% Similarity=0.129 Sum_probs=59.6
Q ss_pred chhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEecc
Q psy2646 37 TSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAK 116 (168)
Q Consensus 37 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~ 116 (168)
....++++|.+++|+|++++....+. .+...+ .+.|+++|+||+|+.+...+ ....++....+..++.+||.
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iSa~ 84 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVNAK 84 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEECC
Confidence 35578899999999999876432211 122221 25789999999998643211 11112223334578999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy2646 117 NGANVEQAFLTMATEIK 133 (168)
Q Consensus 117 ~~~~i~~i~~~l~~~~~ 133 (168)
++.|++++.+.+...+.
T Consensus 85 ~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 85 SGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CcccHHHHHHHHHHHHH
Confidence 99999999999887753
No 289
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.49 E-value=1.9e-06 Score=61.86 Aligned_cols=104 Identities=20% Similarity=0.154 Sum_probs=64.1
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHH
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQV 98 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~ 98 (168)
.....+.++.|..--.... ..+ +|++|.|+|+.+.++... .+..++ ...-++++||+|+........+.
T Consensus 91 ~~D~iiIEt~G~~l~~~~~-~~l--~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFS-PEL--ADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCCEEEEECCCCCcccccc-hhh--hCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHH
Confidence 3566788888842111111 122 688999999987655321 111122 12238999999997421112222
Q ss_pred HHHHHHh--cCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 99 AKEYADH--LKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 99 ~~~~~~~--~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
..+..+. .+.+++++||++|+|++++|+++.+.+.
T Consensus 160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 2333332 3589999999999999999999987643
No 290
>PRK01889 GTPase RsgA; Reviewed
Probab=98.49 E-value=9.8e-07 Score=68.80 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=58.6
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHH-hcCCCEEEEeccCCC
Q psy2646 41 YRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYAD-HLKIPFLETSAKNGA 119 (168)
Q Consensus 41 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~vSa~~~~ 119 (168)
+.++|.+++|++++..-....+..++..+... +.|.++|+||+||.+... .....+.. ..+++++.+|+.++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCc
Confidence 58899999999997444444566666665444 677899999999965311 11122222 346899999999999
Q ss_pred CHHHHHHHHH
Q psy2646 120 NVEQAFLTMA 129 (168)
Q Consensus 120 ~i~~i~~~l~ 129 (168)
|++++..++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999888763
No 291
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.46 E-value=6.7e-06 Score=62.29 Aligned_cols=117 Identities=21% Similarity=0.099 Sum_probs=78.4
Q ss_pred eeeeeCCeEEEEEEEeCCCchhhccc-------chhhhcCCcEEEEEEeCCChhh-HHHHHHHHH---------------
Q psy2646 11 QNKKEERTRTLIVIWDTAGQERFRTI-------TSSYYRGAHGIIVVYDCTDQET-FNNLKQWLE--------------- 67 (168)
Q Consensus 11 ~~~~~~~~~~~l~l~Dt~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~--------------- 67 (168)
--..+..++.++|+.|+||.-.-.+. .-..+++||++++|+|+..... .+.+...++
T Consensus 101 VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I 180 (365)
T COG1163 101 VPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTI 180 (365)
T ss_pred ccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEE
Confidence 33445677889999999986432221 2345789999999999986544 333322222
Q ss_pred ---------------------------------------------------HHHHhcCCCCcEEEEEecCCCCCCcccCH
Q psy2646 68 ---------------------------------------------------EIDRYACDNVNKLLVGNKNDQTSKKAVDY 96 (168)
Q Consensus 68 ---------------------------------------------------~i~~~~~~~~piivv~nK~Dl~~~~~v~~ 96 (168)
.+..+ ..=+|.+++.||.|+...
T Consensus 181 ~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~n-rvY~p~l~v~NKiD~~~~----- 254 (365)
T COG1163 181 KKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGN-RVYKPALYVVNKIDLPGL----- 254 (365)
T ss_pred EEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhc-ceeeeeEEEEecccccCH-----
Confidence 11110 113789999999998652
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 97 QVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 97 ~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
++...+.+.. .++.+||..+.|++++.+.+.+.+.--
T Consensus 255 e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~li 291 (365)
T COG1163 255 EELERLARKP--NSVPISAKKGINLDELKERIWDVLGLI 291 (365)
T ss_pred HHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCeE
Confidence 2333444433 799999999999999999999887653
No 292
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.43 E-value=3.7e-06 Score=60.69 Aligned_cols=101 Identities=16% Similarity=0.218 Sum_probs=62.0
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHH
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVA 99 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~ 99 (168)
..+.|.||.|.-... ..+....+..+.++|+.+.+... ..... .. ..|.++++||+|+.+.........
T Consensus 103 ~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~~~~~---~~---~~a~iiv~NK~Dl~~~~~~~~~~~ 171 (207)
T TIGR00073 103 IDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--LKYPG---MF---KEADLIVINKADLAEAVGFDVEKM 171 (207)
T ss_pred CCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--hhhHh---HH---hhCCEEEEEHHHccccchhhHHHH
Confidence 467888998821101 11222355667788887643211 11111 11 467899999999965322222333
Q ss_pred HHHHHhc--CCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 100 KEYADHL--KIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 100 ~~~~~~~--~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
....+.. ..+++++||+++.|++++|+++.+.
T Consensus 172 ~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 172 KADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3333333 3799999999999999999999875
No 293
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=3.3e-06 Score=66.22 Aligned_cols=120 Identities=18% Similarity=0.180 Sum_probs=80.7
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEE
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ---ETFNNLKQWLEEIDRYACDNVNKLLVG 83 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~ 83 (168)
|+...+...+..+..+.|.|.||++++-...-.-+...|..+||++.++. ++-+.+ ..+... .-.-.++|+
T Consensus 37 TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL----~iLdll--gi~~giivl 110 (447)
T COG3276 37 TIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHL----LILDLL--GIKNGIIVL 110 (447)
T ss_pred eEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHH----HHHHhc--CCCceEEEE
Confidence 34445555555556899999999998866555567789999999999753 333222 222222 123459999
Q ss_pred ecCCCCCCcccCHHHHHHHHHhc---CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 84 NKNDQTSKKAVDYQVAKEYADHL---KIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 84 nK~Dl~~~~~v~~~~~~~~~~~~---~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
||+|..+...+. +...++...+ +.+++.+|+.+|.||+++-+.+...+.
T Consensus 111 tk~D~~d~~r~e-~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 111 TKADRVDEARIE-QKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred eccccccHHHHH-HHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 999987643222 2222232222 367899999999999999999998874
No 294
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.40 E-value=2e-06 Score=64.77 Aligned_cols=90 Identities=21% Similarity=0.160 Sum_probs=60.7
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccC
Q psy2646 38 SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKN 117 (168)
Q Consensus 38 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~ 117 (168)
...++.+|.+++|+|+..+.+.... .+...+ .+.|+++|+||+|+.+.... ....++.+..+.+++.+||.+
T Consensus 16 ~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iSa~~ 87 (276)
T TIGR03596 16 KEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAINAKK 87 (276)
T ss_pred HHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEEECCC
Confidence 4568899999999999876442221 111112 25799999999998543211 111122233456789999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy2646 118 GANVEQAFLTMATEIKKR 135 (168)
Q Consensus 118 ~~~i~~i~~~l~~~~~~~ 135 (168)
+.|++++.+.+...+...
T Consensus 88 ~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 88 GKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 999999999888776544
No 295
>KOG1532|consensus
Probab=98.40 E-value=7.9e-06 Score=60.71 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=69.2
Q ss_pred eEEEEEEEeCCCchh-hcccc-----hhhhc--CCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 18 TRTLIVIWDTAGQER-FRTIT-----SSYYR--GAHGIIVVYDCTDQET-FNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~-~~~~~-----~~~~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
......+.|||||-+ |.+-. ...++ ..-++++++|..+..+ -....+++....-.-..+.|+|++.||.|+
T Consensus 114 ~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 114 EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccc
Confidence 335688999999854 33221 11122 3456778888764321 122223333222222458999999999998
Q ss_pred CCCcc----cCHHH----HH-----------------HHHHhc-CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 89 TSKKA----VDYQV----AK-----------------EYADHL-KIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 89 ~~~~~----v~~~~----~~-----------------~~~~~~-~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
....- ++.-+ +. .+-+.+ ++..+-|||.+|.|.+++|.++-..+.+.
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 64311 11100 00 111112 36789999999999999999998777654
No 296
>KOG0085|consensus
Probab=98.38 E-value=1.2e-07 Score=68.57 Aligned_cols=138 Identities=20% Similarity=0.253 Sum_probs=101.0
Q ss_pred CcccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHH
Q psy2646 1 MRLLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTD----------QETFNNLKQWLEEID 70 (168)
Q Consensus 1 ~~~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~ 70 (168)
+|+.+||-|+....++-..+-+.+.|.+|+..-+.-|-+++.+.-.++|++.++. .+.+++...++..+.
T Consensus 180 LRvRvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi 259 (359)
T KOG0085|consen 180 LRVRVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTII 259 (359)
T ss_pred heeecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHh
Confidence 4778999999999999999999999999998888889999999888888765543 334555555666665
Q ss_pred Hhc-CCCCcEEEEEecCCCCCCccc----------------CHHHHHHHHHh----cC------CCEEEEeccCCCCHHH
Q psy2646 71 RYA-CDNVNKLLVGNKNDQTSKKAV----------------DYQVAKEYADH----LK------IPFLETSAKNGANVEQ 123 (168)
Q Consensus 71 ~~~-~~~~piivv~nK~Dl~~~~~v----------------~~~~~~~~~~~----~~------~~~~~vSa~~~~~i~~ 123 (168)
.+. -.+.++|+..||.|+.+++.. +...+.+|.-. ++ +--.+++|.+.+||.-
T Consensus 260 ~yPWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRf 339 (359)
T KOG0085|consen 260 TYPWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRF 339 (359)
T ss_pred ccccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHH
Confidence 554 347899999999998543321 11223333321 22 2356789999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy2646 124 AFLTMATEIKKRVTK 138 (168)
Q Consensus 124 i~~~l~~~~~~~~~~ 138 (168)
+|.++-+.+.+..-+
T Consensus 340 VFaaVkDtiLq~~Lk 354 (359)
T KOG0085|consen 340 VFAAVKDTILQLNLK 354 (359)
T ss_pred HHHHHHHHHHHhhhH
Confidence 999999888876543
No 297
>KOG1490|consensus
Probab=98.38 E-value=2.1e-06 Score=68.29 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=85.0
Q ss_pred eeeeCCeEEEEEEEeCCCchhh----cccchh-----hhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEE
Q psy2646 12 NKKEERTRTLIVIWDTAGQERF----RTITSS-----YYRGAHGIIVVYDCTDQ--ETFNNLKQWLEEIDRYACDNVNKL 80 (168)
Q Consensus 12 ~~~~~~~~~~l~l~Dt~G~~~~----~~~~~~-----~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~pii 80 (168)
..+++.+=..+|+.||||.-+- ....+. ..+=-.+|+|+.|++.. .|......++..|... -.+.|.|
T Consensus 207 vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~I 285 (620)
T KOG1490|consen 207 VGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTI 285 (620)
T ss_pred hhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceE
Confidence 3344556678999999996321 111111 11223578999999864 5677777788887554 3478999
Q ss_pred EEEecCCCCCCcccCHHHHH---HHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 81 LVGNKNDQTSKKAVDYQVAK---EYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 81 vv~nK~Dl~~~~~v~~~~~~---~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+|+||+|+.....++.+... .+...-++++++.|..+.+|+-++-......+...
T Consensus 286 lvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 286 LVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred EEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHHH
Confidence 99999999877677654432 23334458999999999999999888877776654
No 298
>PRK13796 GTPase YqeH; Provisional
Probab=98.37 E-value=3.6e-06 Score=65.90 Aligned_cols=84 Identities=25% Similarity=0.369 Sum_probs=56.7
Q ss_pred hcCCc-EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHH----HHHhcCC---CEEE
Q psy2646 41 YRGAH-GIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKE----YADHLKI---PFLE 112 (168)
Q Consensus 41 ~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~----~~~~~~~---~~~~ 112 (168)
+..++ .+++|+|+.+.. ..|...+.+.. .+.|+++|+||+|+... ....+.... +++.+++ .++.
T Consensus 66 i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 66 IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLRPVDVVL 138 (365)
T ss_pred hcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence 34455 899999997743 12333443332 25799999999999643 233333332 3455565 6899
Q ss_pred EeccCCCCHHHHHHHHHHH
Q psy2646 113 TSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 113 vSa~~~~~i~~i~~~l~~~ 131 (168)
+||+++.|++++++.+.+.
T Consensus 139 vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999998764
No 299
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.37 E-value=3e-06 Score=65.24 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=71.1
Q ss_pred CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC-
Q psy2646 17 RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD- 95 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~- 95 (168)
..++.+.|.||+|.-.-. ......+|.++++.+....+.+.... ..+.+ ..-++|+||+|+.+.....
T Consensus 146 ~~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E-----~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 146 AAGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIME-----LADLIVINKADGDNKTAARR 214 (332)
T ss_pred ccCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhhh-----hhheEEeehhcccchhHHHH
Confidence 345789999999975211 22567799999998755444433322 21222 2348999999986532211
Q ss_pred -HHHHHHHHHh-------cCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 96 -YQVAKEYADH-------LKIPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 96 -~~~~~~~~~~-------~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
..+....... +..+++.+||.++.|++++++.+.+++....+..
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg 266 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASG 266 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCC
Confidence 1122222221 2358999999999999999999998877444433
No 300
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.37 E-value=6.5e-06 Score=65.01 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=34.5
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHH-HHHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQ-AFLTMATE 131 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~-i~~~l~~~ 131 (168)
..|+++|+||.|+..... ....+.+.....++.+||..+.++.+ +.+.+.+.
T Consensus 217 ~KPvI~VlNK~D~~~~~~----~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~ 269 (396)
T PRK09602 217 SKPMVIAANKADLPPAEE----NIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDY 269 (396)
T ss_pred CCCEEEEEEchhcccchH----HHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhh
Confidence 589999999999753211 12222222245799999999999988 55555443
No 301
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=2.9e-06 Score=66.56 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=68.5
Q ss_pred cceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 8 QTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 8 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
+.+..+.++..+..+.|.||||++.|..-.-..+..+|.+|.|+|+...-.- ...++++ +.+. .++||+-++||.|
T Consensus 69 VtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~KLfe-Vcrl--R~iPI~TFiNKlD 144 (528)
T COG4108 69 VTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLKLFE-VCRL--RDIPIFTFINKLD 144 (528)
T ss_pred EEeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccH-HHHHHHH-HHhh--cCCceEEEeeccc
Confidence 4567788888899999999999999876555567789999999999864211 1222222 3333 4899999999999
Q ss_pred CCCCcccCHHHHHHHHHhcCCCEEE
Q psy2646 88 QTSKKAVDYQVAKEYADHLKIPFLE 112 (168)
Q Consensus 88 l~~~~~v~~~~~~~~~~~~~~~~~~ 112 (168)
..... +.+.+.++.+.+++..++
T Consensus 145 R~~rd--P~ELLdEiE~~L~i~~~P 167 (528)
T COG4108 145 REGRD--PLELLDEIEEELGIQCAP 167 (528)
T ss_pred cccCC--hHHHHHHHHHHhCcceec
Confidence 76543 234455555666554433
No 302
>KOG1707|consensus
Probab=98.33 E-value=7.8e-06 Score=66.06 Aligned_cols=125 Identities=16% Similarity=0.228 Sum_probs=87.8
Q ss_pred ccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q psy2646 5 LPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGN 84 (168)
Q Consensus 5 ~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~n 84 (168)
-|-...+.+.+.+....+.+-|++-. ....+...- ..+|++.++||.+++.+|......+...... .+.|+++|++
T Consensus 459 ~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~ 534 (625)
T KOG1707|consen 459 KPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVAT 534 (625)
T ss_pred CCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEee
Confidence 34444556666677778888888765 333333333 7899999999999999999888766655332 5899999999
Q ss_pred cCCCCCCcccCHHHHHHHHHhcCC-CEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 85 KNDQTSKKAVDYQVAKEYADHLKI-PFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 85 K~Dl~~~~~v~~~~~~~~~~~~~~-~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
|.|+.+..+.......+++.++++ +.+.+|...... .++|..|+.++..
T Consensus 535 K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 535 KADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQY 584 (625)
T ss_pred ccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhhC
Confidence 999986543322333678888886 345666664333 8899988877664
No 303
>KOG0099|consensus
Probab=98.31 E-value=2.5e-06 Score=62.90 Aligned_cols=134 Identities=17% Similarity=0.161 Sum_probs=91.3
Q ss_pred cccccccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHH
Q psy2646 2 RLLLPYQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ----------ETFNNLKQWLEEIDR 71 (168)
Q Consensus 2 ~~~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~ 71 (168)
|+.+=|-|+-...+.=..+.++.+|.+||..-+.-|-.++.+.-++|||+..+.- +.+.+...++..+..
T Consensus 184 rcRvlTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWn 263 (379)
T KOG0099|consen 184 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWN 263 (379)
T ss_pred HhhhhccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHh
Confidence 3444455666666666677899999999998888999999999999999977652 345555666666655
Q ss_pred hc-CCCCcEEEEEecCCCCCCcccC----------------------------HH--HHHHHHHh-------------cC
Q psy2646 72 YA-CDNVNKLLVGNKNDQTSKKAVD----------------------------YQ--VAKEYADH-------------LK 107 (168)
Q Consensus 72 ~~-~~~~piivv~nK~Dl~~~~~v~----------------------------~~--~~~~~~~~-------------~~ 107 (168)
+. ...+.+|+..||.|+..++... +. .+.-+... +-
T Consensus 264 NRwL~tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~ 343 (379)
T KOG0099|consen 264 NRWLRTISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHY 343 (379)
T ss_pred hhHHhhhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCcee
Confidence 44 4468899999999973211100 00 00001110 11
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 108 IPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 108 ~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
+-+.+++|.+..+|..+|...-+.+.+-
T Consensus 344 CYpHFTcAvDTenIrrVFnDcrdiIqr~ 371 (379)
T KOG0099|consen 344 CYPHFTCAVDTENIRRVFNDCRDIIQRM 371 (379)
T ss_pred cccceeEeechHHHHHHHHHHHHHHHHH
Confidence 4467889999999999999988776543
No 304
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.30 E-value=4.7e-06 Score=63.20 Aligned_cols=90 Identities=22% Similarity=0.253 Sum_probs=60.9
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccC
Q psy2646 38 SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKN 117 (168)
Q Consensus 38 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~ 117 (168)
...+..+|++++|+|+.++.+... .++.... .+.|+++|.||+|+...... .....+....+.+++.+||.+
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~vSa~~ 90 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEVT--KKWIEYFEEQGIKALAINAKK 90 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHHH--HHHHHHHHHcCCeEEEEECCC
Confidence 456889999999999987643222 1122221 25799999999998542111 111222233457789999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy2646 118 GANVEQAFLTMATEIKKR 135 (168)
Q Consensus 118 ~~~i~~i~~~l~~~~~~~ 135 (168)
+.|++++.+.+...+...
T Consensus 91 ~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 91 GQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 999999999888776554
No 305
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.27 E-value=5.4e-06 Score=61.51 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=74.1
Q ss_pred EEEEEEeCCCchh-------hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC-
Q psy2646 20 TLIVIWDTAGQER-------FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK- 91 (168)
Q Consensus 20 ~~l~l~Dt~G~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~- 91 (168)
-.+.||||||..+ ++.....++...|.++++.++.++.---+.+.|..-+ .. .-+.++++++|.+|...+
T Consensus 87 ~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi-~~-~~~~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 87 ENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVI-IL-GLDKRVLFVVTQADRAEPG 164 (296)
T ss_pred cceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHH-Hh-ccCceeEEEEehhhhhccc
Confidence 4588999999754 5556677888999999999999874322333333333 22 224899999999996421
Q ss_pred ------cccCHHHHHH-----------HHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 92 ------KAVDYQVAKE-----------YADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 92 ------~~v~~~~~~~-----------~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
.........+ ++.. =-|++.++...+.|++.+...++..+..
T Consensus 165 ~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 165 REWDSAGHQPSPAIKQFIEEKAEALGRLFQE-VKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHhh-cCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 0111111111 1211 1488999999999999999999988764
No 306
>KOG0705|consensus
Probab=98.26 E-value=8.2e-06 Score=65.65 Aligned_cols=130 Identities=18% Similarity=0.393 Sum_probs=100.1
Q ss_pred ceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEecCC
Q psy2646 9 TLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGNKND 87 (168)
Q Consensus 9 ~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D 87 (168)
+.+++.+++....+.+.|.+|... ..|-.++|++||||...+.++|+.+..+...+..+. ...+|+++++++--
T Consensus 66 ~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~ 140 (749)
T KOG0705|consen 66 FKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDH 140 (749)
T ss_pred ceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcch
Confidence 467778889999999999999433 458889999999999999999999988877774433 44688888888744
Q ss_pred CC--CCcccCHHHHHHHHHhc-CCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCCCCC
Q psy2646 88 QT--SKKAVDYQVAKEYADHL-KIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKPS 143 (168)
Q Consensus 88 l~--~~~~v~~~~~~~~~~~~-~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~~~~ 143 (168)
.. ..+.+.+..+..+..++ .+.+|+.++..|.+++.+|..+...+......++...
T Consensus 141 iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~~~~qq~~~ 199 (749)
T KOG0705|consen 141 ISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKIVQLRKYQQLPA 199 (749)
T ss_pred hhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHHHHHHhhhhccc
Confidence 33 23455556666655444 5899999999999999999999988887755554443
No 307
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.24 E-value=1.4e-05 Score=60.31 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=68.9
Q ss_pred hcccchhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEE
Q psy2646 33 FRTITSSYYRGAHGIIVVYDCTDQE-TFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFL 111 (168)
Q Consensus 33 ~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 111 (168)
-+.+.+.-+.+.|-+++++.+.+|+ +..-+..++-..... ++..+++.||+||........++........+++++
T Consensus 69 kn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~ 145 (301)
T COG1162 69 KNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVL 145 (301)
T ss_pred cCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEE
Confidence 3445556677788889999888875 455566655555433 566688899999976544332344556667899999
Q ss_pred EEeccCCCCHHHHHHHHHHH
Q psy2646 112 ETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 112 ~vSa~~~~~i~~i~~~l~~~ 131 (168)
.+|++++.+++++...+...
T Consensus 146 ~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 146 FVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred EecCcCcccHHHHHHHhcCC
Confidence 99999999999888877644
No 308
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.22 E-value=4.2e-06 Score=63.83 Aligned_cols=105 Identities=18% Similarity=0.176 Sum_probs=66.2
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHH
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQ 97 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~ 97 (168)
.++.+.|.||+|.-. .....+..+|.++++.+... -+++..+...+ .+.|.++++||+|+.........
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~---~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGT---GDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCc---cHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHH
Confidence 467899999998532 11235667888888854433 23333333323 24678999999998754321100
Q ss_pred H------HHHHHH---hcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 98 V------AKEYAD---HLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 98 ~------~~~~~~---~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
. ...+.. .+..+++++||.++.|++++++++.+...
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0 011111 12346999999999999999999998755
No 309
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.20 E-value=4e-06 Score=72.12 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=52.1
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
+.+.+.|+||||+.+|.......++.+|++|+|+|+...-.......| ..+.. .++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHH---CCCCEEEEEECCccc
Confidence 467889999999999877777788999999999999876433332223 33332 368999999999986
No 310
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.17 E-value=4.8e-06 Score=70.70 Aligned_cols=70 Identities=29% Similarity=0.274 Sum_probs=51.9
Q ss_pred CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 16 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
++++..+.|+||||+.+|.......++.+|++|+|+|+.......... .+...... +.|.|+++||+|..
T Consensus 83 ~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~-~~~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 83 EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTET-VLRQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHH-HHHHHHHc---CCCeEEEEECchhh
Confidence 456788999999999988777778899999999999998653322222 22322222 46789999999975
No 311
>PTZ00416 elongation factor 2; Provisional
Probab=98.15 E-value=4.6e-06 Score=71.70 Aligned_cols=67 Identities=24% Similarity=0.350 Sum_probs=51.5
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
...+.|.||||+.+|..-....++.+|++|+|+|+...-.... ...+..+... +.|+++++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~---~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQE---RIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHc---CCCEEEEEEChhhh
Confidence 5789999999999887767778899999999999987533232 2333444333 58999999999986
No 312
>KOG1191|consensus
Probab=98.14 E-value=6.7e-06 Score=65.31 Aligned_cols=132 Identities=19% Similarity=0.170 Sum_probs=83.2
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchh-hcc--------cchhhhcCCcEEEEEEeCC--ChhhHHHHHHHHHHHHHh---
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQER-FRT--------ITSSYYRGAHGIIVVYDCT--DQETFNNLKQWLEEIDRY--- 72 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~-~~~--------~~~~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~--- 72 (168)
|++.-...++-.++++.+.||+|..+ -.. .....++.+|++++|+|+. +-.+...+...+.....-
T Consensus 303 TRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~ 382 (531)
T KOG1191|consen 303 TRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVV 382 (531)
T ss_pred chhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEE
Confidence 45555566667778899999999765 111 1234577899999999993 333333434444443111
Q ss_pred ---cCCCCcEEEEEecCCCCCC-cccCHHHHHHHHHhc---CCC-EEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 73 ---ACDNVNKLLVGNKNDQTSK-KAVDYQVAKEYADHL---KIP-FLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 73 ---~~~~~piivv~nK~Dl~~~-~~v~~~~~~~~~~~~---~~~-~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
.....|++++.||.|+... ...... ...+.... ..+ ..++|+++++|++.+...+...+.......
T Consensus 383 ~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~ 456 (531)
T KOG1191|consen 383 IVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVVSP 456 (531)
T ss_pred EeccccccceEEEechhhccCccccccCC-ceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhcCC
Confidence 1235789999999998653 122110 11111111 133 456999999999999999999888776633
No 313
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.14 E-value=6.9e-06 Score=53.89 Aligned_cols=98 Identities=21% Similarity=0.133 Sum_probs=66.5
Q ss_pred EEeCCCchhhcccc----hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHH
Q psy2646 24 IWDTAGQERFRTIT----SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVA 99 (168)
Q Consensus 24 l~Dt~G~~~~~~~~----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~ 99 (168)
..||||.-.-++.| -.....+|.+++|-.++++.+.-. ..+... ...|+|-+++|.||.+...+ +..
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed~dI--~~~ 111 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAEDADI--SLV 111 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----cccccc--cccceEEEEecccccchHhH--HHH
Confidence 57999954323333 334678999999999998754111 111111 14569999999999864333 344
Q ss_pred HHHHHhcC-CCEEEEeccCCCCHHHHHHHHHH
Q psy2646 100 KEYADHLK-IPFLETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 100 ~~~~~~~~-~~~~~vSa~~~~~i~~i~~~l~~ 130 (168)
..+..+-| -++|++|+.++.|++++++.|..
T Consensus 112 ~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 112 KRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 45555555 58999999999999999998864
No 314
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.12 E-value=1.6e-05 Score=51.79 Aligned_cols=60 Identities=27% Similarity=0.275 Sum_probs=39.3
Q ss_pred EEEEEEeCCCchhh----------cccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 20 TLIVIWDTAGQERF----------RTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
..+.|+||||...- ....+ .+..+|++++|+|++++.. +....++..+. .+.|+++|.||
T Consensus 47 ~~~~~vDtpG~~~~~~~~~~~~~~~~~~~-~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 47 KKFILVDTPGINDGESQDNDGKEIRKFLE-QISKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp EEEEEEESSSCSSSSHHHHHHHHHHHHHH-HHCTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred eeEEEEeCCCCcccchhhHHHHHHHHHHH-HHHHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 34579999996421 11223 3478999999999887322 22334444442 37899999998
No 315
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.12 E-value=7.7e-05 Score=53.28 Aligned_cols=118 Identities=13% Similarity=0.125 Sum_probs=67.8
Q ss_pred eEEEEEEEeCCCchhhcc--------c---chhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEe
Q psy2646 18 TRTLIVIWDTAGQERFRT--------I---TSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC--DNVNKLLVGN 84 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~--------~---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~n 84 (168)
.+.++.|+||||...... + +.....+.|++++|+++++. +-.+ ...+..+..... .-.+++++.|
T Consensus 47 ~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~-t~~d-~~~l~~l~~~fg~~~~~~~ivv~T 124 (196)
T cd01852 47 DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF-TEEE-EQAVETLQELFGEKVLDHTIVLFT 124 (196)
T ss_pred CCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc-CHHH-HHHHHHHHHHhChHhHhcEEEEEE
Confidence 445799999999654321 1 11234578999999999872 2111 222333322211 1257899999
Q ss_pred cCCCCCCcccC------HHHHHHHHHhcCCCEEEEe-----ccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 85 KNDQTSKKAVD------YQVAKEYADHLKIPFLETS-----AKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 85 K~Dl~~~~~v~------~~~~~~~~~~~~~~~~~vS-----a~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
+.|......+. ....+.+.+..+-.++..+ +..+.++.++++.+.+.+....+
T Consensus 125 ~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~ 188 (196)
T cd01852 125 RGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKENGG 188 (196)
T ss_pred CccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 99965432211 1233344444444454444 34566788888888877776443
No 316
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=5.9e-06 Score=69.23 Aligned_cols=78 Identities=22% Similarity=0.169 Sum_probs=59.9
Q ss_pred ccceeeeeeCCe-EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 7 YQTLQNKKEERT-RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 7 t~~~~~~~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
|+.+..+++..+ .+.+.|.||||+-+|..-....++-+|++|+|+|+...-..+.-.-|.+.. ..++|.++++||
T Consensus 62 TI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNK 137 (697)
T COG0480 62 TITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNK 137 (697)
T ss_pred EEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEEC
Confidence 445555666666 499999999999999888888999999999999998764333333344433 236999999999
Q ss_pred CCC
Q psy2646 86 NDQ 88 (168)
Q Consensus 86 ~Dl 88 (168)
+|.
T Consensus 138 mDR 140 (697)
T COG0480 138 MDR 140 (697)
T ss_pred ccc
Confidence 996
No 317
>KOG3886|consensus
Probab=98.10 E-value=1.1e-05 Score=58.39 Aligned_cols=84 Identities=19% Similarity=0.360 Sum_probs=56.5
Q ss_pred cccceeeeeeC-CeEEEEEEEeCCCchhh-----cccchhhhcCCcEEEEEEeCCChhh---HHHHHHHHHHHHHhcCCC
Q psy2646 6 PYQTLQNKKEE-RTRTLIVIWDTAGQERF-----RTITSSYYRGAHGIIVVYDCTDQET---FNNLKQWLEEIDRYACDN 76 (168)
Q Consensus 6 ~t~~~~~~~~~-~~~~~l~l~Dt~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~ 76 (168)
+|+.+..-++. -+++.+.+||.+|++.+ .......+++.++++++||++..+- ++.....++.+.++ .+.
T Consensus 38 ~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~ 116 (295)
T KOG3886|consen 38 ATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPE 116 (295)
T ss_pred CcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCc
Confidence 34444333332 23478899999999854 2234567889999999999987643 33333344445555 467
Q ss_pred CcEEEEEecCCCCC
Q psy2646 77 VNKLLVGNKNDQTS 90 (168)
Q Consensus 77 ~piivv~nK~Dl~~ 90 (168)
..++++.+|+|+..
T Consensus 117 AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 117 AKIFCLLHKMDLVQ 130 (295)
T ss_pred ceEEEEEeechhcc
Confidence 88999999999864
No 318
>KOG3905|consensus
Probab=97.94 E-value=0.00022 Score=54.39 Aligned_cols=114 Identities=13% Similarity=0.188 Sum_probs=78.2
Q ss_pred EEEEEEeCCCchhhcccchhhhcC---Cc-EEEEEEeCCCh-hhHHHHHHHHHHHHHh----------------------
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRG---AH-GIIVVYDCTDQ-ETFNNLKQWLEEIDRY---------------------- 72 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~---~d-~~i~v~d~~~~-~s~~~~~~~~~~i~~~---------------------- 72 (168)
.++.+|=..|......+....+.. ++ .+||++|++++ ..++.+.+|..-+.++
T Consensus 100 tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~w 179 (473)
T KOG3905|consen 100 TRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDW 179 (473)
T ss_pred hhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 567788888865444443333322 33 68889999998 4566666666533222
Q ss_pred ---------------------------------------cCCCCcEEEEEecCCCC----CCcccC-------HHHHHHH
Q psy2646 73 ---------------------------------------ACDNVNKLLVGNKNDQT----SKKAVD-------YQVAKEY 102 (168)
Q Consensus 73 ---------------------------------------~~~~~piivv~nK~Dl~----~~~~v~-------~~~~~~~ 102 (168)
.+-++|++||++|+|.. .+.... ...++.|
T Consensus 180 QeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkF 259 (473)
T KOG3905|consen 180 QEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKF 259 (473)
T ss_pred HHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHH
Confidence 01268999999999973 222222 2345678
Q ss_pred HHhcCCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 103 ADHLKIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 103 ~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
|-.+|...+++|+++..|++-+...|++.+.
T Consensus 260 CLr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 260 CLRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred HHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 8899999999999999999998888887664
No 319
>KOG0461|consensus
Probab=97.93 E-value=0.00015 Score=55.75 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=64.3
Q ss_pred CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHH-HHHHHHhcCCCCcEEEEEecCCCCCC--cc
Q psy2646 17 RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQW-LEEIDRYACDNVNKLLVGNKNDQTSK--KA 93 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-~~~i~~~~~~~~piivv~nK~Dl~~~--~~ 93 (168)
++.+++.+.|.||+.......-.-..-.|..++|+|+....--+.+.-+ +.++ . -...+||+||.|+..+ +.
T Consensus 67 ~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~--~---c~klvvvinkid~lpE~qr~ 141 (522)
T KOG0461|consen 67 GEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL--L---CKKLVVVINKIDVLPENQRA 141 (522)
T ss_pred cccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh--h---ccceEEEEeccccccchhhh
Confidence 5668899999999975543322233346889999999864222222211 1111 1 2457888899886543 11
Q ss_pred cCHH-HHHHHHHhc-------CCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 94 VDYQ-VAKEYADHL-------KIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 94 v~~~-~~~~~~~~~-------~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
-..+ ......+.+ +.|++++||..|+--.+.+..+...+..+
T Consensus 142 ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~ 191 (522)
T KOG0461|consen 142 SKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESR 191 (522)
T ss_pred hHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHh
Confidence 1111 111222211 27999999999955555555555444443
No 320
>KOG0468|consensus
Probab=97.91 E-value=1.8e-05 Score=65.17 Aligned_cols=69 Identities=25% Similarity=0.342 Sum_probs=53.7
Q ss_pred CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 16 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
.++.+-+.+.||||+-.|..-....++.+|++++++|+.+.-.+..-+-+...+. ...|+++++||+|.
T Consensus 193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----ccCcEEEEEehhHH
Confidence 4677889999999997776666677899999999999998766655443333332 36899999999994
No 321
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.91 E-value=8.9e-05 Score=48.42 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=56.7
Q ss_pred hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEE
Q psy2646 33 FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLE 112 (168)
Q Consensus 33 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 112 (168)
+..+...+.+.++.++++++.++.++++.+ |...+......+.|.++++||.|+.....+...... .+++
T Consensus 36 ~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~ 105 (124)
T smart00010 36 IDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAE 105 (124)
T ss_pred hhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHH
Confidence 334446678899999999999999888765 776665443456889999999998543344433332 3556
Q ss_pred EeccCCCCHH
Q psy2646 113 TSAKNGANVE 122 (168)
Q Consensus 113 vSa~~~~~i~ 122 (168)
+|++++.|+.
T Consensus 106 ~s~~~~~~~~ 115 (124)
T smart00010 106 TSAKTPEEGE 115 (124)
T ss_pred HhCCCcchhh
Confidence 6888888874
No 322
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.91 E-value=9.9e-05 Score=54.03 Aligned_cols=96 Identities=8% Similarity=0.046 Sum_probs=57.4
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCCCCCCcc-cC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLVGNKNDQTSKKA-VD 95 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl~~~~~-v~ 95 (168)
.+.++.++||||.- ..+ ...++.+|.+++++|++....... ..++..+... +.|. ++++||+|+.+... ..
T Consensus 81 ~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~ 153 (225)
T cd01882 81 KKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLR 153 (225)
T ss_pred CCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHH
Confidence 45678899999863 222 234688999999999986433222 2233333333 4674 55999999864221 11
Q ss_pred --HHHHHH-HHHh--cCCCEEEEeccCCCC
Q psy2646 96 --YQVAKE-YADH--LKIPFLETSAKNGAN 120 (168)
Q Consensus 96 --~~~~~~-~~~~--~~~~~~~vSa~~~~~ 120 (168)
...+.. +... .+.+++.+||+++..
T Consensus 154 ~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 154 KTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 111211 2221 236899999998853
No 323
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.84 E-value=0.0001 Score=41.69 Aligned_cols=44 Identities=25% Similarity=0.267 Sum_probs=29.9
Q ss_pred CCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 43 GAHGIIVVYDCTDQ--ETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 43 ~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
=.++++|++|++.. .+.++-..++..++.. -.+.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~-F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL-FPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH-TTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH-cCCCCEEEEEeccC
Confidence 36899999999964 5777777888888665 34799999999998
No 324
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.74 E-value=0.00057 Score=55.18 Aligned_cols=115 Identities=14% Similarity=0.268 Sum_probs=78.1
Q ss_pred EEEEEEeCCCchhhcccchhhhcC----CcEEEEEEeCCChhh-HHHHHHHHHHHHHh----------------------
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRG----AHGIIVVYDCTDQET-FNNLKQWLEEIDRY---------------------- 72 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~----~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~---------------------- 72 (168)
.++.+|-..|...+..+....+.. --.+|+|+|++.|.. ++.+..|+..+..+
T Consensus 73 ~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~ 152 (472)
T PF05783_consen 73 ARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQW 152 (472)
T ss_pred ceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 578999999876666665554442 247889999999843 44445554432111
Q ss_pred ---------c-------------------------------CCCCcEEEEEecCCCCC----C-----cccC--HHHHHH
Q psy2646 73 ---------A-------------------------------CDNVNKLLVGNKNDQTS----K-----KAVD--YQVAKE 101 (168)
Q Consensus 73 ---------~-------------------------------~~~~piivv~nK~Dl~~----~-----~~v~--~~~~~~ 101 (168)
. +-++|++||++|.|... . ..++ ...++.
T Consensus 153 q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~ 232 (472)
T PF05783_consen 153 QEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRT 232 (472)
T ss_pred HHhhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHH
Confidence 0 01489999999999631 1 1111 123566
Q ss_pred HHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 102 YADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 102 ~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
+|-.+|..++++|++...+++-+...|.+.+..
T Consensus 233 ~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~ 265 (472)
T PF05783_consen 233 FCLKYGASLIYTSVKEEKNLDLLYKYILHRLYG 265 (472)
T ss_pred HHHhcCCeEEEeeccccccHHHHHHHHHHHhcc
Confidence 788899999999999999998888887777654
No 325
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.71 E-value=0.00044 Score=53.92 Aligned_cols=106 Identities=18% Similarity=0.112 Sum_probs=64.5
Q ss_pred EEEEEEeCCCchhhcc--cchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC--
Q psy2646 20 TLIVIWDTAGQERFRT--ITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD-- 95 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~--~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~-- 95 (168)
--+.|.||.|+++|-. +...+-...|-.++++.+++..+.- ..+-+..+.. .+.|++++.||+|+.....+.
T Consensus 201 klVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a---~~lPviVvvTK~D~~~ddr~~~v 276 (527)
T COG5258 201 KLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA---MELPVIVVVTKIDMVPDDRFQGV 276 (527)
T ss_pred cEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh---hcCCEEEEEEecccCcHHHHHHH
Confidence 3578999999998754 2233445688899999888764321 2222222222 379999999999986432211
Q ss_pred HHHHH----------------------HHHHhcC---CCEEEEeccCCCCHHHHHHHHH
Q psy2646 96 YQVAK----------------------EYADHLK---IPFLETSAKNGANVEQAFLTMA 129 (168)
Q Consensus 96 ~~~~~----------------------~~~~~~~---~~~~~vSa~~~~~i~~i~~~l~ 129 (168)
.+++. ..+-..+ .|+|.+|+.+|.|++-+.+.+.
T Consensus 277 ~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 277 VEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred HHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 01110 0111111 5899999999999765544443
No 326
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00042 Score=52.25 Aligned_cols=126 Identities=15% Similarity=0.126 Sum_probs=75.5
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCC-cEEEE
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ---ETFNNLKQWLEEIDRYACDNV-NKLLV 82 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~-piivv 82 (168)
|+.+..+.++..+..+-..|.||+..|-...-.-..+.|+.|||+++++. ++-+.+. + ..+. ++ -++++
T Consensus 62 TIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--l--arqv---Gvp~ivvf 134 (394)
T COG0050 62 TINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--L--ARQV---GVPYIVVF 134 (394)
T ss_pred eeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--h--hhhc---CCcEEEEE
Confidence 44455555555666788999999998866555556789999999999874 3333221 1 1222 44 56888
Q ss_pred EecCCCCCCcccC---HHHHHHHHHhcC-----CCEEEEeccCCCC----HHHHHHHHHHHHHHHhccC
Q psy2646 83 GNKNDQTSKKAVD---YQVAKEYADHLK-----IPFLETSAKNGAN----VEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 83 ~nK~Dl~~~~~v~---~~~~~~~~~~~~-----~~~~~vSa~~~~~----i~~i~~~l~~~~~~~~~~~ 139 (168)
.||+|+.....+. ..+.+++...++ .|++.-||..--. -.+.+..|++.+....+.+
T Consensus 135 lnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 135 LNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred EecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence 9999997633321 123445666665 4677777654321 2333444555555544443
No 327
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.64 E-value=0.00066 Score=47.65 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=60.2
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHH
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQ 97 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~ 97 (168)
..+.+.|+||||... ......+..+|.+++++..+. .+...+..++..+... +.|+.+|+|+.|.... ...
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 567899999997642 223456788999999998874 3566666666666544 5678999999996432 234
Q ss_pred HHHHHHHhcCCCEEE
Q psy2646 98 VAKEYADHLKIPFLE 112 (168)
Q Consensus 98 ~~~~~~~~~~~~~~~ 112 (168)
+..++.+.++++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 566677777877653
No 328
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.63 E-value=0.00014 Score=50.32 Aligned_cols=64 Identities=23% Similarity=0.280 Sum_probs=44.9
Q ss_pred EEEEEEeCCCchh----hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 20 TLIVIWDTAGQER----FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 20 ~~l~l~Dt~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
..+.|+||||... ...++..|+..+|++|+|++++..-+-.+...+....... ...+++|.||.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 3589999999743 2356778899999999999999865544555555544333 34589999984
No 329
>KOG0466|consensus
Probab=97.61 E-value=5.6e-05 Score=57.08 Aligned_cols=111 Identities=10% Similarity=0.098 Sum_probs=66.0
Q ss_pred EEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC--HHH
Q psy2646 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD--YQV 98 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~--~~~ 98 (168)
.+.|.|.||++-+-.....-..-.|+.++++..+.+-.--...+-+..+.-+. -.-++++-||+|+..+.+.. .++
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli~e~~A~eq~e~ 203 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLIKESQALEQHEQ 203 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhhhHHHHHHHHHH
Confidence 57899999998542211111223567777776654311111111122221111 24689999999997654322 223
Q ss_pred HHHHHHhc---CCCEEEEeccCCCCHHHHHHHHHHHHH
Q psy2646 99 AKEYADHL---KIPFLETSAKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 99 ~~~~~~~~---~~~~~~vSa~~~~~i~~i~~~l~~~~~ 133 (168)
++.|.... +.|++++||.-++|++.+.+.++..+.
T Consensus 204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 44455432 479999999999999888888776653
No 330
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.55 E-value=0.00036 Score=51.53 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=43.9
Q ss_pred EEEEEEeCCCchhh-------------cccchhhhcC-CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 20 TLIVIWDTAGQERF-------------RTITSSYYRG-AHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~-------------~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
..|.|.||||.... ..+...|+++ .+.+++|+|+...-.-.+...+...+. ..+.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 57999999997421 2244567774 458889998864322222223333332 236899999999
Q ss_pred CCCCC
Q psy2646 86 NDQTS 90 (168)
Q Consensus 86 ~Dl~~ 90 (168)
.|...
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99865
No 331
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.46 E-value=0.0043 Score=49.28 Aligned_cols=118 Identities=16% Similarity=0.231 Sum_probs=68.8
Q ss_pred cccceeeeeeCCeEEEEEEEeCCCchhhccc-----------------------------chhhhc-CCcEEEEEE-eCC
Q psy2646 6 PYQTLQNKKEERTRTLIVIWDTAGQERFRTI-----------------------------TSSYYR-GAHGIIVVY-DCT 54 (168)
Q Consensus 6 ~t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~-----------------------------~~~~~~-~~d~~i~v~-d~~ 54 (168)
|.........++-..++.+.||+|-..-..+ ....+. .++..|+|. |.+
T Consensus 77 P~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgs 156 (492)
T TIGR02836 77 PNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGT 156 (492)
T ss_pred cCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCC
Confidence 3334444444667788999999984321110 122344 688877777 664
Q ss_pred --C--hhhH-HHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCC--CCHHHHHHH
Q psy2646 55 --D--QETF-NNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNG--ANVEQAFLT 127 (168)
Q Consensus 55 --~--~~s~-~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~--~~i~~i~~~ 127 (168)
+ ++.+ +.-..++..++.. ++|++++.|+.|-.... +.+....+...++++++.+|+..- ..+..+|+.
T Consensus 157 i~dI~Re~y~~aEe~~i~eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~ 231 (492)
T TIGR02836 157 ITDIPREDYVEAEERVIEELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEE 231 (492)
T ss_pred ccccccccchHHHHHHHHHHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHH
Confidence 1 1222 2334567777655 79999999999932221 333344566677888887776533 244444443
Q ss_pred H
Q psy2646 128 M 128 (168)
Q Consensus 128 l 128 (168)
+
T Consensus 232 v 232 (492)
T TIGR02836 232 V 232 (492)
T ss_pred H
Confidence 3
No 332
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.41 E-value=0.0011 Score=50.59 Aligned_cols=78 Identities=13% Similarity=0.007 Sum_probs=42.8
Q ss_pred eEEEEEEEeCCCchhhcccc-------hhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEecC
Q psy2646 18 TRTLIVIWDTAGQERFRTIT-------SSYY--RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYAC--DNVNKLLVGNKN 86 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~-------~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~ 86 (168)
.+..+.|+||||..+..... ..++ .+.|+++||..++.......-..++..+...-+ --.++||+.|+.
T Consensus 84 ~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~ 163 (313)
T TIGR00991 84 AGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHA 163 (313)
T ss_pred CCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECC
Confidence 44689999999976532211 1112 268999999665532111111223333322211 125789999999
Q ss_pred CCCCCcccC
Q psy2646 87 DQTSKKAVD 95 (168)
Q Consensus 87 Dl~~~~~v~ 95 (168)
|.......+
T Consensus 164 d~~~pd~~~ 172 (313)
T TIGR00991 164 QFSPPDGLE 172 (313)
T ss_pred ccCCCCCCC
Confidence 976444444
No 333
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.31 E-value=0.00064 Score=48.24 Aligned_cols=102 Identities=22% Similarity=0.206 Sum_probs=62.2
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHH
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVA 99 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~ 99 (168)
..+.|.+.+|. +..- -.+.-..+.-|+|+|++..+..-. +....--..=++|+||.||...-..+.+..
T Consensus 97 ~Dll~iEs~GN--L~~~-~sp~L~d~~~v~VidvteGe~~P~--------K~gP~i~~aDllVInK~DLa~~v~~dlevm 165 (202)
T COG0378 97 LDLLFIESVGN--LVCP-FSPDLGDHLRVVVIDVTEGEDIPR--------KGGPGIFKADLLVINKTDLAPYVGADLEVM 165 (202)
T ss_pred CCEEEEecCcc--eecc-cCcchhhceEEEEEECCCCCCCcc--------cCCCceeEeeEEEEehHHhHHHhCccHHHH
Confidence 56778888882 1110 112222347788888886432100 000000113489999999976544444444
Q ss_pred HHHHHhc--CCCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 100 KEYADHL--KIPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 100 ~~~~~~~--~~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
..-++.. +.+++++|+++|+|++++++|+...+
T Consensus 166 ~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 166 ARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 4444444 38999999999999999999987653
No 334
>KOG0465|consensus
Probab=97.26 E-value=0.0016 Score=53.52 Aligned_cols=74 Identities=24% Similarity=0.278 Sum_probs=55.0
Q ss_pred eeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 13 KKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 13 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
..+..+.+.+.+.||||+-.|..-.+..++--||.|+++|....-.-+...-|.+ +.++ ++|-+..+||+|...
T Consensus 97 t~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry---~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 97 TYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY---NVPRICFINKMDRMG 170 (721)
T ss_pred eeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc---CCCeEEEEehhhhcC
Confidence 3444567899999999999988888889999999999998875422222223333 3333 799999999999755
No 335
>KOG0464|consensus
Probab=97.26 E-value=8.7e-05 Score=58.30 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=63.0
Q ss_pred ccceeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 7 YQTLQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 7 t~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
|+-+--+.+|.++.++.++||||+-.|+--.+.+++--||.+.|||.+-.-.-+.+..|.+.- .-++|-.+++||+
T Consensus 89 tiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqad----k~~ip~~~finkm 164 (753)
T KOG0464|consen 89 TIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD----KFKIPAHCFINKM 164 (753)
T ss_pred eeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc----ccCCchhhhhhhh
Confidence 445566778999999999999999999988899999999999999998654444444555432 3368999999999
Q ss_pred CCC
Q psy2646 87 DQT 89 (168)
Q Consensus 87 Dl~ 89 (168)
|..
T Consensus 165 dk~ 167 (753)
T KOG0464|consen 165 DKL 167 (753)
T ss_pred hhh
Confidence 964
No 336
>KOG1424|consensus
Probab=97.24 E-value=0.00052 Score=55.14 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=51.9
Q ss_pred hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEE
Q psy2646 33 FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLE 112 (168)
Q Consensus 33 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 112 (168)
|+.+|+- +..+|+||.++|+.++--|.. ..+..++.+. .+.+..++++||.||....+.. .-..+....++++++
T Consensus 165 WRQLWRV-lErSDivvqIVDARnPllfr~-~dLe~Yvke~-d~~K~~~LLvNKaDLl~~~qr~--aWa~YF~~~ni~~vf 239 (562)
T KOG1424|consen 165 WRQLWRV-LERSDIVVQIVDARNPLLFRS-PDLEDYVKEV-DPSKANVLLVNKADLLPPEQRV--AWAEYFRQNNIPVVF 239 (562)
T ss_pred HHHHHHH-HhhcceEEEEeecCCccccCC-hhHHHHHhcc-ccccceEEEEehhhcCCHHHHH--HHHHHHHhcCceEEE
Confidence 3444443 678999999999999743322 2222333222 3456789999999997654322 222455566799999
Q ss_pred EeccC
Q psy2646 113 TSAKN 117 (168)
Q Consensus 113 vSa~~ 117 (168)
.||..
T Consensus 240 ~SA~~ 244 (562)
T KOG1424|consen 240 FSALA 244 (562)
T ss_pred Eeccc
Confidence 99987
No 337
>KOG3887|consensus
Probab=97.22 E-value=0.0047 Score=45.50 Aligned_cols=116 Identities=22% Similarity=0.290 Sum_probs=68.5
Q ss_pred EEEEEEEeCCCchhh-cc--cchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH-hc-CCCCcEEEEEecCCCCCC-c
Q psy2646 19 RTLIVIWDTAGQERF-RT--ITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDR-YA-CDNVNKLLVGNKNDQTSK-K 92 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~-~~--~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-~~-~~~~piivv~nK~Dl~~~-~ 92 (168)
-+.+++||.|||-.+ .+ -.+..++++.++|||+|+-+. -.+.+..+...+.+ +. ++++.+=|.+.|.|-... -
T Consensus 74 finf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ 152 (347)
T KOG3887|consen 74 FINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF 152 (347)
T ss_pred hcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh
Confidence 367999999998543 22 235578999999999999753 23333333333322 22 567888899999995321 1
Q ss_pred ccCHH-HHHHH----HHhcC-----CCEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy2646 93 AVDYQ-VAKEY----ADHLK-----IPFLETSAKNGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 93 ~v~~~-~~~~~----~~~~~-----~~~~~vSa~~~~~i~~i~~~l~~~~~~~~ 136 (168)
.+..+ .+.+- ....| +.++-+| .-...|.+.|..++..+..+.
T Consensus 153 kietqrdI~qr~~d~l~d~gle~v~vsf~LTS-IyDHSIfEAFSkvVQkLipqL 205 (347)
T KOG3887|consen 153 KIETQRDIHQRTNDELADAGLEKVQVSFYLTS-IYDHSIFEAFSKVVQKLIPQL 205 (347)
T ss_pred hhhhHHHHHHHhhHHHHhhhhccceEEEEEee-ecchHHHHHHHHHHHHHhhhc
Confidence 11111 11111 11122 3445544 445678888888887776543
No 338
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.21 E-value=0.001 Score=50.38 Aligned_cols=56 Identities=21% Similarity=0.215 Sum_probs=39.2
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHHHhc--CCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYADHL--KIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
..+-++|+||+|+........+...+..+.. ..+++++||++|+|++++++||...
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999642111222233333332 4789999999999999999999764
No 339
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0067 Score=45.95 Aligned_cols=112 Identities=18% Similarity=0.199 Sum_probs=71.3
Q ss_pred CeEEEEEEEeCCC--chhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc
Q psy2646 17 RTRTLIVIWDTAG--QERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAV 94 (168)
Q Consensus 17 ~~~~~l~l~Dt~G--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v 94 (168)
.-++.+.|.+|.| |.+ -.....+|.++++.-..-.+..+-++ .-+.+ +-=++|+||.|......
T Consensus 141 AaG~DvIIVETVGvGQse-----v~I~~~aDt~~~v~~pg~GD~~Q~iK---~GimE-----iaDi~vINKaD~~~A~~- 206 (323)
T COG1703 141 AAGYDVIIVETVGVGQSE-----VDIANMADTFLVVMIPGAGDDLQGIK---AGIME-----IADIIVINKADRKGAEK- 206 (323)
T ss_pred hcCCCEEEEEecCCCcch-----hHHhhhcceEEEEecCCCCcHHHHHH---hhhhh-----hhheeeEeccChhhHHH-
Confidence 3456788999986 433 23566799988887665444444332 22222 33489999999654211
Q ss_pred CHHH---HHHHH------HhcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhccCCCC
Q psy2646 95 DYQV---AKEYA------DHLKIPFLETSAKNGANVEQAFLTMATEIKKRVTKDEKP 142 (168)
Q Consensus 95 ~~~~---~~~~~------~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~~~~ 142 (168)
...+ ...+. +.|..+++.+||.+|.|++++++.+.++...........
T Consensus 207 a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~~~ 263 (323)
T COG1703 207 AARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGLFT 263 (323)
T ss_pred HHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhccccc
Confidence 1111 11122 123468999999999999999999999888776665443
No 340
>KOG1143|consensus
Probab=97.12 E-value=0.0058 Score=47.76 Aligned_cols=101 Identities=18% Similarity=0.235 Sum_probs=61.7
Q ss_pred EEEEEEeCCCchhhcccchhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC--
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYR--GAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD-- 95 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~-- 95 (168)
-.+.|+|.+|+.+|....-.-+. ..|-..++++++..-.. ..++-+..+... ++|++++++|+|+.....+.
T Consensus 249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~~~t 324 (591)
T KOG1143|consen 249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAAL---NIPFFVLVTKMDLVDRQGLKKT 324 (591)
T ss_pred ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHHh---CCCeEEEEEeeccccchhHHHH
Confidence 35789999999998664333222 25677788887764221 122233333333 79999999999986542221
Q ss_pred ----------------------HHHHHHHHHh----cCCCEEEEeccCCCCHHHH
Q psy2646 96 ----------------------YQVAKEYADH----LKIPFLETSAKNGANVEQA 124 (168)
Q Consensus 96 ----------------------~~~~~~~~~~----~~~~~~~vSa~~~~~i~~i 124 (168)
..++...+.+ .=.|+|.+|+.+|+|++-+
T Consensus 325 v~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 325 VKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 1122222222 2258999999999997543
No 341
>PTZ00258 GTP-binding protein; Provisional
Probab=97.07 E-value=0.012 Score=46.59 Aligned_cols=45 Identities=18% Similarity=0.085 Sum_probs=29.0
Q ss_pred CCCcEEEEEecC--CCCCCcccCHHHHHHHHHhc-CCCEEEEeccCCC
Q psy2646 75 DNVNKLLVGNKN--DQTSKKAVDYQVAKEYADHL-KIPFLETSAKNGA 119 (168)
Q Consensus 75 ~~~piivv~nK~--Dl~~~~~v~~~~~~~~~~~~-~~~~~~vSa~~~~ 119 (168)
..+|+++++|+. |+.....-..+.+..++... +.+++.+||+-..
T Consensus 219 t~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~ 266 (390)
T PTZ00258 219 TAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE 266 (390)
T ss_pred hcCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 358999999999 76211111234455566666 4789999986554
No 342
>KOG0467|consensus
Probab=96.96 E-value=0.0017 Score=54.46 Aligned_cols=71 Identities=24% Similarity=0.229 Sum_probs=50.7
Q ss_pred eeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 13 KKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 13 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
+..-.+++.+.+.|+||+-+|.+......+-+|+.++++|+...-.-+... .+.+.. ..+...++|+||+|
T Consensus 65 is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~-vlrq~~---~~~~~~~lvinkid 135 (887)
T KOG0467|consen 65 ISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYA-VLRQAW---IEGLKPILVINKID 135 (887)
T ss_pred cccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHH-HHHHHH---HccCceEEEEehhh
Confidence 333457789999999999999888888888899999999998652222211 122221 12456799999999
No 343
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.94 E-value=0.0051 Score=45.76 Aligned_cols=73 Identities=14% Similarity=0.072 Sum_probs=41.3
Q ss_pred CeEEEEEEEeCCCchhhcc---c-------chhhhc--CCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCC--CCcEEE
Q psy2646 17 RTRTLIVIWDTAGQERFRT---I-------TSSYYR--GAHGIIVVYDCTDQE-TFNNLKQWLEEIDRYACD--NVNKLL 81 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~~~---~-------~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~piiv 81 (168)
..+..+.||||||...... . ...++. ..|+++++..++... ...+ ..++..+....+. -.++++
T Consensus 76 ~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~iv 154 (249)
T cd01853 76 VDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIV 154 (249)
T ss_pred ECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEE
Confidence 3346789999999764311 0 122333 578888887666431 2221 2233333322111 257999
Q ss_pred EEecCCCCC
Q psy2646 82 VGNKNDQTS 90 (168)
Q Consensus 82 v~nK~Dl~~ 90 (168)
|.||+|...
T Consensus 155 V~T~~d~~~ 163 (249)
T cd01853 155 VLTHAASSP 163 (249)
T ss_pred EEeCCccCC
Confidence 999999754
No 344
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.92 E-value=0.0024 Score=44.81 Aligned_cols=45 Identities=31% Similarity=0.175 Sum_probs=28.5
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 45 HGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 45 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
|++++|+|+.++.+... ..+...+. ....+.|+++|+||+|+...
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCCH
Confidence 78999999988633211 12222221 11235899999999999643
No 345
>KOG1954|consensus
Probab=96.88 E-value=0.00093 Score=51.94 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=48.3
Q ss_pred EEEEEeCCCch-----------hhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 21 LIVIWDTAGQE-----------RFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 21 ~l~l~Dt~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+.|.||||.- .|......|...+|.++++||+...+--++....+..+..+ .-.+-||.||.|..
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---EdkiRVVLNKADqV 224 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---EDKIRVVLNKADQV 224 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---cceeEEEecccccc
Confidence 57899999942 13344577889999999999998665444444455555444 56788999999975
Q ss_pred CC
Q psy2646 90 SK 91 (168)
Q Consensus 90 ~~ 91 (168)
..
T Consensus 225 dt 226 (532)
T KOG1954|consen 225 DT 226 (532)
T ss_pred CH
Confidence 43
No 346
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.78 E-value=0.0015 Score=48.45 Aligned_cols=104 Identities=17% Similarity=0.220 Sum_probs=62.4
Q ss_pred EEEEEEeCCC--chhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHH
Q psy2646 20 TLIVIWDTAG--QERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQ 97 (168)
Q Consensus 20 ~~l~l~Dt~G--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~ 97 (168)
+.+.|.+|.| |.+. ....-+|.+++|..+.-.+..+-++ .-+.+ .+=++|+||.|.+..+.. ..
T Consensus 122 ~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~K---aGimE-----iaDi~vVNKaD~~gA~~~-~~ 187 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIK---AGIME-----IADIFVVNKADRPGADRT-VR 187 (266)
T ss_dssp -SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB----TTHHH-----H-SEEEEE--SHHHHHHH-HH
T ss_pred CCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHh---hhhhh-----hccEEEEeCCChHHHHHH-HH
Confidence 5678888875 5442 2567799999999877554433322 11222 234899999996543221 12
Q ss_pred HHHHHHH-------hcCCCEEEEeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 98 VAKEYAD-------HLKIPFLETSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 98 ~~~~~~~-------~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
+...... .|..|++.+||.++.|++++++.+.++......
T Consensus 188 ~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~ 234 (266)
T PF03308_consen 188 DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKE 234 (266)
T ss_dssp HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 2222221 123589999999999999999999877655443
No 347
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.76 E-value=0.0097 Score=43.09 Aligned_cols=120 Identities=13% Similarity=0.121 Sum_probs=63.3
Q ss_pred eeCCeEEEEEEEeCCCchhhcc--------c---chhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEE
Q psy2646 14 KEERTRTLIVIWDTAGQERFRT--------I---TSSYYRGAHGIIVVYDCTDQE-TFNNLKQWLEEIDRYACDNVNKLL 81 (168)
Q Consensus 14 ~~~~~~~~l~l~Dt~G~~~~~~--------~---~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiv 81 (168)
.+++ ..+.|+||||...... + ......+.|+++||+.++... ....+..++..+-... --.-+||
T Consensus 45 ~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~-~~k~~iv 121 (212)
T PF04548_consen 45 EVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE-IWKHTIV 121 (212)
T ss_dssp EETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG-GGGGEEE
T ss_pred eecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH-HHhHhhH
Confidence 4445 5688999999532111 1 112345789999999998431 1222222333321110 1135888
Q ss_pred EEecCCCCCCcccCH-------HHHHHHHHhcCCCEEEEecc------CCCCHHHHHHHHHHHHHHHh
Q psy2646 82 VGNKNDQTSKKAVDY-------QVAKEYADHLKIPFLETSAK------NGANVEQAFLTMATEIKKRV 136 (168)
Q Consensus 82 v~nK~Dl~~~~~v~~-------~~~~~~~~~~~~~~~~vSa~------~~~~i~~i~~~l~~~~~~~~ 136 (168)
|.|..|......+.. .....+.+..+-.++..+.. ....+.++|..+-..+..+.
T Consensus 122 vfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 122 VFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 899888655433211 12344556666667766655 22456777777776666554
No 348
>KOG0460|consensus
Probab=96.66 E-value=0.009 Score=46.13 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=67.0
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc-cC--H
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKA-VD--Y 96 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~-v~--~ 96 (168)
-..-=.|.||+.+|....-.-....|+.|+|+.++|.. +...++-+-...+.. =..++|.+||.|+....+ ++ .
T Consensus 117 RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVE 193 (449)
T KOG0460|consen 117 RHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVE 193 (449)
T ss_pred cccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHH
Confidence 34556899999888665445566789999999998852 222222222222331 145788899999874322 21 1
Q ss_pred HHHHHHHHhcC-----CCEEEEec---cCCCCH---HHHHHHHHHHHHHHhccC
Q psy2646 97 QVAKEYADHLK-----IPFLETSA---KNGANV---EQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 97 ~~~~~~~~~~~-----~~~~~vSa---~~~~~i---~~i~~~l~~~~~~~~~~~ 139 (168)
-+.+++...++ +|++.-|| ..|.+- .+.+..|++.+....+.+
T Consensus 194 mE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P 247 (449)
T KOG0460|consen 194 MEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP 247 (449)
T ss_pred HHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc
Confidence 23445556664 57886654 455321 234455555555544433
No 349
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.57 E-value=0.012 Score=43.11 Aligned_cols=63 Identities=29% Similarity=0.311 Sum_probs=45.5
Q ss_pred EEEEEEeC-CCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC-CcEEEEEecCCCC
Q psy2646 20 TLIVIWDT-AGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDN-VNKLLVGNKNDQT 89 (168)
Q Consensus 20 ~~l~l~Dt-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~piivv~nK~Dl~ 89 (168)
..+.+.|| +|.+.|. +...+++|.+|.|+|++- .++..+..+.....+. + .++.+|+||.|-.
T Consensus 134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~el---g~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL---GIKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh---CCceEEEEEeeccch
Confidence 56778888 5777665 467889999999999984 3555555544443333 4 7899999999853
No 350
>KOG0459|consensus
Probab=96.57 E-value=0.0044 Score=48.74 Aligned_cols=116 Identities=19% Similarity=0.147 Sum_probs=68.0
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChh---hHHHHHHHHHHHHHhc-CCCCcEEEEEec
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQE---TFNNLKQWLEEIDRYA-CDNVNKLLVGNK 85 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~-~~~~piivv~nK 85 (168)
.-.-.+....-++.+.|.||+..|-+..-.-..+||.-++|+++...+ .|+.-..-.+...... ..-...|+++||
T Consensus 147 vGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNK 226 (501)
T KOG0459|consen 147 VGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINK 226 (501)
T ss_pred eeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEe
Confidence 333444455568999999999887664444567789888888775321 2332211111111111 123567999999
Q ss_pred CCCCCCcc--cCHHH----HHHHHHhcC------CCEEEEeccCCCCHHHHH
Q psy2646 86 NDQTSKKA--VDYQV----AKEYADHLK------IPFLETSAKNGANVEQAF 125 (168)
Q Consensus 86 ~Dl~~~~~--v~~~~----~~~~~~~~~------~~~~~vSa~~~~~i~~i~ 125 (168)
+|.+.-.. -..++ ...|....+ ..++++|..+|.++.+-.
T Consensus 227 MddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 227 MDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred ccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 99764211 11222 223333222 579999999999987754
No 351
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.49 E-value=0.024 Score=42.75 Aligned_cols=98 Identities=18% Similarity=0.167 Sum_probs=59.4
Q ss_pred eEEEEEEEeCCCchhhcccc----h---hh-----hcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q psy2646 18 TRTLIVIWDTAGQERFRTIT----S---SY-----YRGAHGIIVVYDCTDQ-ETFNNLKQWLEEIDRYACDNVNKLLVGN 84 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~----~---~~-----~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~n 84 (168)
.++.+.|.||||........ . .. -...|.+++|+|++.. +.+..+. .+.+. -.+.-++.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~----~f~~~---~~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAK----VFNEA---VGLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHH----HHHhh---CCCCEEEEE
Confidence 44789999999975432211 0 01 1238999999999743 2333322 22221 124588899
Q ss_pred cCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHH
Q psy2646 85 KNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTM 128 (168)
Q Consensus 85 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l 128 (168)
|.|....-. ....+....+.|+.+++ +|++++++-..-
T Consensus 226 KlDe~~~~G----~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~~ 263 (272)
T TIGR00064 226 KLDGTAKGG----IILSIAYELKLPIKFIG--VGEKIDDLAPFD 263 (272)
T ss_pred ccCCCCCcc----HHHHHHHHHCcCEEEEe--CCCChHhCccCC
Confidence 999754322 23344555689999998 888887765433
No 352
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=96.34 E-value=0.072 Score=41.85 Aligned_cols=45 Identities=18% Similarity=0.072 Sum_probs=28.9
Q ss_pred CCCcEEEEEecCCCCC-CcccCHHHHHHHHHhcCCCEEEEeccCCC
Q psy2646 75 DNVNKLLVGNKNDQTS-KKAVDYQVAKEYADHLKIPFLETSAKNGA 119 (168)
Q Consensus 75 ~~~piivv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSa~~~~ 119 (168)
..+|+++++|+.|..- ...-....+.+++...+.+++.+||.-..
T Consensus 198 t~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~E~ 243 (364)
T PRK09601 198 TAKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKIEA 243 (364)
T ss_pred ccCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 3689999999988521 11112244555665668889999985443
No 353
>KOG1486|consensus
Probab=96.27 E-value=0.085 Score=39.35 Aligned_cols=52 Identities=19% Similarity=0.156 Sum_probs=36.5
Q ss_pred CcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 77 VNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 77 ~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
++++.|.||+| +++.++...++..-+ -+-+|+.-+-|++.+++.+...+.--
T Consensus 239 ~~ClYvYnKID-----~vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~L~ 290 (364)
T KOG1486|consen 239 IKCLYVYNKID-----QVSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELNLV 290 (364)
T ss_pred EEEEEEeeccc-----eecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhceE
Confidence 55666677776 355566666666543 45667788899999999999887653
No 354
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.22 E-value=0.021 Score=44.13 Aligned_cols=93 Identities=23% Similarity=0.164 Sum_probs=60.3
Q ss_pred CCch-hhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhc
Q psy2646 28 AGQE-RFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHL 106 (168)
Q Consensus 28 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~ 106 (168)
+|+. ++.......+..+|+++.|+|+.++.+...- .+..+. .+.|.++|+||.|+..... ...=...+.+..
T Consensus 18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~--~l~~~v----~~k~~i~vlNK~DL~~~~~-~~~W~~~~~~~~ 90 (322)
T COG1161 18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP--ELERIV----KEKPKLLVLNKADLAPKEV-TKKWKKYFKKEE 90 (322)
T ss_pred CCchHHHHHHHHHhcccCCEEEEEEeccccccccCc--cHHHHH----ccCCcEEEEehhhcCCHHH-HHHHHHHHHhcC
Confidence 6653 4444556678899999999999998653321 122221 2455699999999976433 222223344444
Q ss_pred CCCEEEEeccCCCCHHHHHHH
Q psy2646 107 KIPFLETSAKNGANVEQAFLT 127 (168)
Q Consensus 107 ~~~~~~vSa~~~~~i~~i~~~ 127 (168)
+...+.+++..+.+...+...
T Consensus 91 ~~~~~~v~~~~~~~~~~i~~~ 111 (322)
T COG1161 91 GIKPIFVSAKSRQGGKKIRKA 111 (322)
T ss_pred CCccEEEEeecccCccchHHH
Confidence 677889999999887776643
No 355
>KOG0448|consensus
Probab=96.14 E-value=0.032 Score=46.70 Aligned_cols=93 Identities=19% Similarity=0.262 Sum_probs=56.6
Q ss_pred EEEEEeCCCch---hhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHH
Q psy2646 21 LIVIWDTAGQE---RFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQ 97 (168)
Q Consensus 21 ~l~l~Dt~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~ 97 (168)
.+.+.|.||.+ ........+-.++|++|||+.+.+..+..+ .+++.... ..+.-++++.||+|....+.-..+
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs---~~KpniFIlnnkwDasase~ec~e 282 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVS---EEKPNIFILNNKWDASASEPECKE 282 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhh---ccCCcEEEEechhhhhcccHHHHH
Confidence 57899999975 334445667789999999999887644333 33333332 224567778889998754333333
Q ss_pred HHHHHHHhcC--------CCEEEEeccC
Q psy2646 98 VAKEYADHLK--------IPFLETSAKN 117 (168)
Q Consensus 98 ~~~~~~~~~~--------~~~~~vSa~~ 117 (168)
.+..-..++. -.+|+|||+.
T Consensus 283 ~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 283 DVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 3322222222 2478888653
No 356
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.13 E-value=0.049 Score=42.03 Aligned_cols=96 Identities=24% Similarity=0.239 Sum_probs=58.4
Q ss_pred eEEEEEEEeCCCchhhcc--------cch---h-hhcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q psy2646 18 TRTLIVIWDTAGQERFRT--------ITS---S-YYRGAHGIIVVYDCTDQ-ETFNNLKQWLEEIDRYACDNVNKLLVGN 84 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~--------~~~---~-~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~n 84 (168)
..+.+.|.||||...... +.. . .-...+..++|+|++.. +.+..+..+. .. -.+.-++.|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~----~~---~~~~giIlT 267 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH----EA---VGLTGIILT 267 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH----hh---CCCCEEEEE
Confidence 457899999999753221 111 0 11246789999999853 2333322211 11 134588999
Q ss_pred cCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHH
Q psy2646 85 KNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFL 126 (168)
Q Consensus 85 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~ 126 (168)
|.|....-. .+..+....++|+.+++ +|++++++-.
T Consensus 268 KlD~t~~~G----~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 268 KLDGTAKGG----VVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCCCCCcc----HHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 999543222 23345566689999999 8888877654
No 357
>KOG0463|consensus
Probab=96.08 E-value=0.019 Score=44.99 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=56.7
Q ss_pred EEEEEeCCCchhhcccc--hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC--H
Q psy2646 21 LIVIWDTAGQERFRTIT--SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD--Y 96 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~--~ 96 (168)
.+.|+|.+|+++|-... ...-+..|-..+++-++-. -..-..+-+...... .+|+++|.+|+|+.....+. .
T Consensus 220 viTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALaL---~VPVfvVVTKIDMCPANiLqEtm 295 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALAL---HVPVFVVVTKIDMCPANILQETM 295 (641)
T ss_pred eEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhhh---cCcEEEEEEeeccCcHHHHHHHH
Confidence 57899999999885432 2223346667777655432 111111112222222 68999999999986543221 1
Q ss_pred HHHHHHH--------------------------HhcCCCEEEEeccCCCCHHHH
Q psy2646 97 QVAKEYA--------------------------DHLKIPFLETSAKNGANVEQA 124 (168)
Q Consensus 97 ~~~~~~~--------------------------~~~~~~~~~vSa~~~~~i~~i 124 (168)
..+..+. .+.-+|+|.+|..+|+|+.-+
T Consensus 296 Kll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL 349 (641)
T KOG0463|consen 296 KLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL 349 (641)
T ss_pred HHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH
Confidence 1111111 112268999999999997544
No 358
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=96.03 E-value=0.15 Score=35.71 Aligned_cols=91 Identities=11% Similarity=0.101 Sum_probs=67.5
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHH
Q psy2646 43 GAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVE 122 (168)
Q Consensus 43 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 122 (168)
..|.++|++|.....++..+..=+..+...-- --.+.++++-....+...+...+..+++..+.+|++.+.-....+..
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~ff-lGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~ 142 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFF-LGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT 142 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhh-ccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence 47999999999999898888766665521101 12356666666555545688889999999999999999998888887
Q ss_pred HHHHHHHHHHHH
Q psy2646 123 QAFLTMATEIKK 134 (168)
Q Consensus 123 ~i~~~l~~~~~~ 134 (168)
.+-+.+.+.+.-
T Consensus 143 ~lAqRLL~~lqi 154 (176)
T PF11111_consen 143 SLAQRLLRMLQI 154 (176)
T ss_pred HHHHHHHHHHHH
Confidence 777777766554
No 359
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=95.85 E-value=0.058 Score=42.47 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=48.6
Q ss_pred EEEEEeCCCchhhcccchhh-----hcCCcEEEEEEeCCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEecCCCC-----
Q psy2646 21 LIVIWDTAGQERFRTITSSY-----YRGAHGIIVVYDCTDQETFNNLKQWL-EEIDRYACDNVNKLLVGNKNDQT----- 89 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piivv~nK~Dl~----- 89 (168)
.+.+||.||.-....-...| +..-|.+|++.+-. |....-++ ..+.+. +.|+.+|-+|+|..
T Consensus 87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~ 159 (376)
T PF05049_consen 87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNER 159 (376)
T ss_dssp TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHH
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhh
Confidence 48899999964333223334 44578777766432 43333333 333433 78999999999951
Q ss_pred --CCcccCHHHH----HHHH-H---hcC---CCEEEEeccCCC--CHHHHHHHHHHHHH
Q psy2646 90 --SKKAVDYQVA----KEYA-D---HLK---IPFLETSAKNGA--NVEQAFLTMATEIK 133 (168)
Q Consensus 90 --~~~~v~~~~~----~~~~-~---~~~---~~~~~vSa~~~~--~i~~i~~~l~~~~~ 133 (168)
.++....++. ++-+ + ..+ -++|-+|+.+-. +...+.+.|.+.+.
T Consensus 160 ~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 160 RRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp CC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 2223332222 2222 1 123 368888987765 35555555554443
No 360
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.81 E-value=0.045 Score=36.81 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=45.4
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
+.+.++|+|+.. .......+..+|.++++++.+. .++..+...+..+... ....++.++.|+.+-
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~-~s~~~~~~~l~~l~~~-~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP-TSITDAYALIKKLAKQ-LRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh-hHHHHHHHHHHHHHHh-cCCCCEEEEEeCCCC
Confidence 678999999753 3333567889999999998873 4555555555555433 234678899999874
No 361
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=95.73 E-value=0.079 Score=40.04 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=23.6
Q ss_pred EEEEEeCCCchhhc----ccchh---hhcCCcEEEEEEeCC
Q psy2646 21 LIVIWDTAGQERFR----TITSS---YYRGAHGIIVVYDCT 54 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~----~~~~~---~~~~~d~~i~v~d~~ 54 (168)
+++++|+||..+-. .+... .++.+|++++|+|..
T Consensus 63 ~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 63 TIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 59999999964321 12222 357899999999873
No 362
>KOG0410|consensus
Probab=95.52 E-value=0.015 Score=44.66 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=65.2
Q ss_pred EEEEEEeCCCchh---------hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc----EEEEEecC
Q psy2646 20 TLIVIWDTAGQER---------FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN----KLLVGNKN 86 (168)
Q Consensus 20 ~~l~l~Dt~G~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p----iivv~nK~ 86 (168)
..+.+.||-|--. |... -.-+..+|.++.|+|++.|+.-......+.-+....-+..| ++=|=||.
T Consensus 226 ~~vlltDTvGFisdLP~~LvaAF~AT-LeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnki 304 (410)
T KOG0410|consen 226 NFVLLTDTVGFISDLPIQLVAAFQAT-LEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKI 304 (410)
T ss_pred cEEEEeechhhhhhCcHHHHHHHHHH-HHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccc
Confidence 3577889988421 2211 12366899999999999997655444444444443222222 34456777
Q ss_pred CCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy2646 87 DQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKKR 135 (168)
Q Consensus 87 Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~~ 135 (168)
|..+... + .+.+ ..+.+||.+|.|++++.+++-..+..-
T Consensus 305 D~e~~~~-e-------~E~n--~~v~isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 305 DYEEDEV-E-------EEKN--LDVGISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred ccccccC-c-------cccC--CccccccccCccHHHHHHHHHHHhhhh
Confidence 7644221 1 1122 267889999999999999888776653
No 363
>PHA02518 ParA-like protein; Provisional
Probab=95.50 E-value=0.094 Score=37.47 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=41.4
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCc-EEEEEecCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ--ETFNNLKQWLEEIDRYACDNVN-KLLVGNKND 87 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D 87 (168)
..+.+.|+|+||.. ..+....+..+|.+|+++..+.. .....+..++..+... ....| ..++.|+.+
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iv~n~~~ 144 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEV-TDGLPKFAFIISRAI 144 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhh-CCCCceEEEEEeccC
Confidence 34689999999873 34456778899999999987742 2233333334333222 22344 456667765
No 364
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.41 E-value=0.21 Score=37.49 Aligned_cols=80 Identities=24% Similarity=0.311 Sum_probs=55.3
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHH
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVA 99 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~ 99 (168)
..+.|.|+|.--. --.-..+.++|.+|+|--.+ +-.++++...++....+ +.|..+|.||.++.. + +.
T Consensus 164 ~~~~IIDsaaG~g--CpVi~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~f---~ip~~iViNr~~~g~----s--~i 231 (284)
T COG1149 164 ADLLIIDSAAGTG--CPVIASLKGADLAILVTEPT-PFGLHDLKRALELVEHF---GIPTGIVINRYNLGD----S--EI 231 (284)
T ss_pred cceeEEecCCCCC--ChHHHhhccCCEEEEEecCC-ccchhHHHHHHHHHHHh---CCceEEEEecCCCCc----h--HH
Confidence 4678888875422 11234688999999997666 34577777777766665 799999999996432 1 56
Q ss_pred HHHHHhcCCCEE
Q psy2646 100 KEYADHLKIPFL 111 (168)
Q Consensus 100 ~~~~~~~~~~~~ 111 (168)
++++...+++++
T Consensus 232 e~~~~e~gi~il 243 (284)
T COG1149 232 EEYCEEEGIPIL 243 (284)
T ss_pred HHHHHHcCCCee
Confidence 678877776654
No 365
>KOG2423|consensus
Probab=95.33 E-value=0.11 Score=41.21 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=55.8
Q ss_pred ccchhhh---cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEE
Q psy2646 35 TITSSYY---RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFL 111 (168)
Q Consensus 35 ~~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 111 (168)
.+|...| ..+|++|-|+|+.||..-. ....-..+... .+..-+|+|.||+||..- .++..=+..+.+.+..--|
T Consensus 202 RIW~ELyKViDSSDVvvqVlDARDPmGTr-c~~ve~ylkke-~phKHli~vLNKvDLVPt-wvt~~Wv~~lSkeyPTiAf 278 (572)
T KOG2423|consen 202 RIWGELYKVIDSSDVVVQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIYVLNKVDLVPT-WVTAKWVRHLSKEYPTIAF 278 (572)
T ss_pred HHHHHHHHhhcccceeEEeeeccCCcccc-cHHHHHHHhhc-CCcceeEEEeeccccccH-HHHHHHHHHHhhhCcceee
Confidence 3455444 4689999999999985311 11111222222 556789999999999643 2332333445566655567
Q ss_pred EEeccCCCCHHHHHHHHHH
Q psy2646 112 ETSAKNGANVEQAFLTMAT 130 (168)
Q Consensus 112 ~vSa~~~~~i~~i~~~l~~ 130 (168)
..|..+..|--.++..+-.
T Consensus 279 HAsi~nsfGKgalI~llRQ 297 (572)
T KOG2423|consen 279 HASINNSFGKGALIQLLRQ 297 (572)
T ss_pred ehhhcCccchhHHHHHHHH
Confidence 7777777775555554443
No 366
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.29 E-value=0.11 Score=33.34 Aligned_cols=62 Identities=18% Similarity=0.117 Sum_probs=42.9
Q ss_pred EEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEec
Q psy2646 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACD-NVNKLLVGNK 85 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~piivv~nK 85 (168)
.+.+.|+|+... ......+..+|.++++++.+. .++..+..++..+.+.... ...+.+|+|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDL-PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCCh-HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 688999998643 223456788999999887764 4677777777776555333 4567777775
No 367
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=95.26 E-value=0.17 Score=39.64 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=56.1
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
..+.+.++|.| .-+......++.++|-+++|++.+ ..+.....+++..+++......+..+++|+.+...
T Consensus 216 ~~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~ 285 (366)
T COG4963 216 GSFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLRPNDPKPILVLNRVGVPK 285 (366)
T ss_pred ccCCeEEEcCC--CccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCCC
Confidence 34678999999 334556678999999999999887 35788888899998887766788899999998643
No 368
>KOG2486|consensus
Probab=95.15 E-value=0.042 Score=41.39 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=59.8
Q ss_pred EEEEEEeCCCc----------hhhcccchhhhcCCc---EEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q psy2646 20 TLIVIWDTAGQ----------ERFRTITSSYYRGAH---GIIVVYDCTDQ--ETFNNLKQWLEEIDRYACDNVNKLLVGN 84 (168)
Q Consensus 20 ~~l~l~Dt~G~----------~~~~~~~~~~~~~~d---~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~n 84 (168)
-.+.+.|.||- .++..+...|+.+-+ -+.+++|++-+ ........|+.+ + ++|..+|.|
T Consensus 183 ~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge---~---~VP~t~vfT 256 (320)
T KOG2486|consen 183 KSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE---N---NVPMTSVFT 256 (320)
T ss_pred ceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh---c---CCCeEEeee
Confidence 46889999991 234445566665433 35566677643 222222333333 2 799999999
Q ss_pred cCCCCCC------cccC-HHH-HHHHH---HhcCCCEEEEeccCCCCHHHHHHHHH
Q psy2646 85 KNDQTSK------KAVD-YQV-AKEYA---DHLKIPFLETSAKNGANVEQAFLTMA 129 (168)
Q Consensus 85 K~Dl~~~------~~v~-~~~-~~~~~---~~~~~~~~~vSa~~~~~i~~i~~~l~ 129 (168)
|+|.... +... ... ...+. .....|++.+|+.++.|++.++-.+.
T Consensus 257 K~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 257 KCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIA 312 (320)
T ss_pred hhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehh
Confidence 9996421 1111 000 11111 11235788999999999988876554
No 369
>KOG2484|consensus
Probab=95.08 E-value=0.041 Score=43.29 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=36.8
Q ss_pred cchhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEecCCCCCCccc
Q psy2646 36 ITSSYYRGAHGIIVVYDCTDQETFN--NLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAV 94 (168)
Q Consensus 36 ~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v 94 (168)
-....+..+|++|.|+|+.||.+-. ++..|.... ..+...|+|.||.||.....+
T Consensus 139 e~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~----~gnKkLILVLNK~DLVPrEv~ 195 (435)
T KOG2484|consen 139 EFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA----HGNKKLILVLNKIDLVPREVV 195 (435)
T ss_pred HHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc----cCCceEEEEeehhccCCHHHH
Confidence 3344567799999999999985422 333333221 234789999999999765443
No 370
>PRK14974 cell division protein FtsY; Provisional
Probab=95.07 E-value=0.19 Score=39.10 Aligned_cols=100 Identities=17% Similarity=0.092 Sum_probs=59.3
Q ss_pred EEEEEEEeCCCchhhcc-cc---hhh--hcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 19 RTLIVIWDTAGQERFRT-IT---SSY--YRGAHGIIVVYDCTDQE-TFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
++.+.|.||+|...... +. ... ....|.+++|+|+...+ ..+.+ ..+... -..--++.||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~---~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEA---VGIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhc---CCCCEEEEeeecCCCC
Confidence 35699999999753221 11 111 23578899999987542 22222 222111 1234788999997543
Q ss_pred cccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHH
Q psy2646 92 KAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 92 ~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
-. .+..++...+.|+.+++ +|++++++..+=...
T Consensus 295 ~G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~~~~~ 328 (336)
T PRK14974 295 GG----AALSIAYVIGKPILFLG--VGQGYDDLIPFDPDW 328 (336)
T ss_pred cc----HHHHHHHHHCcCEEEEe--CCCChhhcccCCHHH
Confidence 22 12344455688999998 799998876543333
No 371
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.05 E-value=0.15 Score=40.93 Aligned_cols=86 Identities=17% Similarity=0.080 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCchhhcc-cc---hhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q psy2646 19 RTLIVIWDTAGQERFRT-IT---SSY--YRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKK 92 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 92 (168)
.+.+.|.||+|...... +. ..+ ....+-++||+|+.-...-. .....+.+. -.+.-++.||.|-...-
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~arg 255 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHAKG 255 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCCCc
Confidence 57899999999754321 11 111 23467899999987432211 122222221 23568889999965432
Q ss_pred ccCHHHHHHHHHhcCCCEEEEe
Q psy2646 93 AVDYQVAKEYADHLKIPFLETS 114 (168)
Q Consensus 93 ~v~~~~~~~~~~~~~~~~~~vS 114 (168)
. .+..+....+.|+.+++
T Consensus 256 G----~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 256 G----GALSAVAATKSPIIFIG 273 (429)
T ss_pred c----HHhhhHHHHCCCeEEEc
Confidence 2 12234445567776666
No 372
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=94.88 E-value=0.36 Score=33.38 Aligned_cols=84 Identities=8% Similarity=0.008 Sum_probs=52.2
Q ss_pred EEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHH
Q psy2646 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAK 100 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~ 100 (168)
.+.|+|+||.... .....+..+|.+|++++.+. .++..+..++..+... ......++.|+.+.... .......
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~--~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMV--EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCccccc--chhhHHH
Confidence 6899999976432 23445788999999997774 3555666666665443 12456889999985432 1222233
Q ss_pred HHHHhcCCCEE
Q psy2646 101 EYADHLKIPFL 111 (168)
Q Consensus 101 ~~~~~~~~~~~ 111 (168)
.+.+.++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 45555666654
No 373
>KOG0469|consensus
Probab=94.86 E-value=0.043 Score=44.67 Aligned_cols=69 Identities=25% Similarity=0.360 Sum_probs=49.4
Q ss_pred CCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 16 ERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 16 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
++..+.+.++|.||+-.|.+-....++=.||.+.|+|..+.--.+.-.-+.+.+.+ .+.-+++.||+|.
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDR 162 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhH
Confidence 45678899999999999988878889999999999998875332222222233322 2334788999994
No 374
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=94.39 E-value=0.18 Score=37.94 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=51.6
Q ss_pred CCcEEEEEEeCCChhh--------HHHHHHHHHHH---HHhcCCCCcEEEEEecCCCCCCcccCHH--HHHHHHHhcCCC
Q psy2646 43 GAHGIIVVYDCTDQET--------FNNLKQWLEEI---DRYACDNVNKLLVGNKNDQTSKKAVDYQ--VAKEYADHLKIP 109 (168)
Q Consensus 43 ~~d~~i~v~d~~~~~s--------~~~~~~~~~~i---~~~~~~~~piivv~nK~Dl~~~~~v~~~--~~~~~~~~~~~~ 109 (168)
..+|+|+++|+++.-. -.....+...+ ........||.+++||+|+...-..-.. ........+|+.
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r~q~lG~t 104 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEEREQVLGFT 104 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHHhCCcccc
Confidence 4799999999875411 11222333333 3333568999999999998653110000 011122344543
Q ss_pred EEEEeccCCCC---HHHHHHHHHHHHHHHhc
Q psy2646 110 FLETSAKNGAN---VEQAFLTMATEIKKRVT 137 (168)
Q Consensus 110 ~~~vSa~~~~~---i~~i~~~l~~~~~~~~~ 137 (168)
+-.-....... +.+.|+.+...+.....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 135 (266)
T PF14331_consen 105 FPYDEDADGDAWAWFDEEFDELVARLNARVL 135 (266)
T ss_pred cCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 32223333334 77777777777766544
No 375
>KOG0447|consensus
Probab=94.36 E-value=0.45 Score=39.45 Aligned_cols=103 Identities=13% Similarity=0.186 Sum_probs=62.2
Q ss_pred eeeCCeEE-EEEEEeCCCch-------------hhcccchhhhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCC
Q psy2646 13 KKEERTRT-LIVIWDTAGQE-------------RFRTITSSYYRGAHGIIVVYDCTDQET-FNNLKQWLEEIDRYACDNV 77 (168)
Q Consensus 13 ~~~~~~~~-~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~ 77 (168)
+++.|.++ +..+.|.||.- ....+...|+.+..++|+|+--...+. -..+.++...+. ..+.
T Consensus 404 ltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~D---P~Gr 480 (980)
T KOG0447|consen 404 LNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMD---PHGR 480 (980)
T ss_pred EeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcC---CCCC
Confidence 34445444 67889999953 223456788999999999983332211 112223333332 3367
Q ss_pred cEEEEEecCCCCCCcccCHHHHHHHHHhc-----CCCEEEEeccCC
Q psy2646 78 NKLLVGNKNDQTSKKAVDYQVAKEYADHL-----KIPFLETSAKNG 118 (168)
Q Consensus 78 piivv~nK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~~vSa~~~ 118 (168)
..|+|.+|.|+.+....++..+.++.+.. .+.||.+-.-.|
T Consensus 481 RTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG 526 (980)
T KOG0447|consen 481 RTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG 526 (980)
T ss_pred eeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence 88999999999876566666666655421 245666653333
No 376
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=93.79 E-value=0.41 Score=35.33 Aligned_cols=65 Identities=14% Similarity=-0.002 Sum_probs=45.0
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
.+.+.|+|+|+... ......+..+|.+|+++..+ ..++..+..++..+.... ..++.++.|+.+.
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG--IEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC--CCceEEEEeCcCc
Confidence 46789999998642 22334577899999988776 456666666666665442 2467889999874
No 377
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=93.77 E-value=0.45 Score=40.42 Aligned_cols=72 Identities=15% Similarity=0.082 Sum_probs=41.7
Q ss_pred EEEEEEEeCCCchhhc-------cc---chhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEe
Q psy2646 19 RTLIVIWDTAGQERFR-------TI---TSSYYR--GAHGIIVVYDCTDQETFNNLKQWLEEIDRYACD--NVNKLLVGN 84 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~-------~~---~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~n 84 (168)
+..+.|+||||..... .+ ...+++ ..|++|+|..++.......-..++..+....+. -.-+|||.|
T Consensus 165 G~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFT 244 (763)
T TIGR00993 165 GVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLT 244 (763)
T ss_pred CceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEe
Confidence 3578999999976431 11 122333 589999998876432221222344444332211 245799999
Q ss_pred cCCCCC
Q psy2646 85 KNDQTS 90 (168)
Q Consensus 85 K~Dl~~ 90 (168)
+.|...
T Consensus 245 hgD~lp 250 (763)
T TIGR00993 245 HAASAP 250 (763)
T ss_pred CCccCC
Confidence 999764
No 378
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=93.73 E-value=1.2 Score=32.70 Aligned_cols=65 Identities=9% Similarity=0.026 Sum_probs=41.6
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNKNDQ 88 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl 88 (168)
+.+.+.|+|+|+... ......+..+|.+|++++.+- .++..+.......... +.+ +.++.|+.+.
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEI-SSITDALKTKIVAEKL---GTAILGVVLNRVTR 172 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCC-chHHHHHHHHHHHHhc---CCceEEEEEECCCc
Confidence 347899999998643 233445678999999998764 3455444433333322 334 5799999875
No 379
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.44 E-value=0.59 Score=37.80 Aligned_cols=86 Identities=17% Similarity=0.078 Sum_probs=49.1
Q ss_pred EEEEEEeCCCchhhcccc----h--hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc
Q psy2646 20 TLIVIWDTAGQERFRTIT----S--SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKA 93 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 93 (168)
..+.|.||+|........ . ..+-.+|.+++|+|++... ++......+... -...-+|.||.|-...-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~---l~i~gvIlTKlD~~a~~G 249 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA---VGIGGIIITKLDGTAKGG 249 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc---CCCCEEEEecccCCCccc
Confidence 378999999975432110 1 1133688999999987642 222222222211 112367889999643322
Q ss_pred cCHHHHHHHHHhcCCCEEEEec
Q psy2646 94 VDYQVAKEYADHLKIPFLETSA 115 (168)
Q Consensus 94 v~~~~~~~~~~~~~~~~~~vSa 115 (168)
.+..+....+.|+.+++.
T Consensus 250 ----~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 250 ----GALSAVAETGAPIKFIGT 267 (437)
T ss_pred ----HHHHHHHHHCcCEEEEec
Confidence 233455666788887773
No 380
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.42 E-value=1.6 Score=31.42 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=52.8
Q ss_pred eEEEEEEEeCCCchhhcccc-hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC-CCc-EEEEEecCCCCCCccc
Q psy2646 18 TRTLIVIWDTAGQERFRTIT-SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACD-NVN-KLLVGNKNDQTSKKAV 94 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p-iivv~nK~Dl~~~~~v 94 (168)
..+.+.|.|++|.--...+. ....+.+|.++++++.+ ..++..+..++..+...... +.+ ..++.|+.+.. .
T Consensus 115 ~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~ 189 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----R 189 (212)
T ss_pred cCCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----c
Confidence 45789999997754222221 11124799999998775 34555555555555443211 333 45899999853 2
Q ss_pred CHHHHHHHHHhcCCCEEE
Q psy2646 95 DYQVAKEYADHLKIPFLE 112 (168)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~ 112 (168)
......++.+.++.+++.
T Consensus 190 ~~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 190 ETELIDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHHHHHcCCCEEE
Confidence 233455677777765544
No 381
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=93.41 E-value=0.79 Score=33.57 Aligned_cols=66 Identities=17% Similarity=0.118 Sum_probs=42.7
Q ss_pred EEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
.+.|+|+|+.. .......+..+|.+++++..+- .++..+...+..+........++.++.|+.|..
T Consensus 116 D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 116 DWVLIDVPRGP--SPITRQALAAADLVLVVVNADA-ACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCCH-HHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 79999999853 3444567889999999998763 345555422222222112345678999999853
No 382
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.25 E-value=0.58 Score=37.74 Aligned_cols=88 Identities=16% Similarity=0.099 Sum_probs=50.7
Q ss_pred eEEEEEEEeCCCchhhcc-cch---h--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 18 TRTLIVIWDTAGQERFRT-ITS---S--YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
..+.+.|.||||...... +.. . ..-..+.++||+|+... .++..+...+.... + ..-++.||.|-...
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--~-i~giIlTKlD~~~~ 254 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--G-LTGVVLTKLDGDAR 254 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--C-CCEEEEeCccCccc
Confidence 446799999999643221 111 1 12357889999998753 23333333332221 2 23677999995432
Q ss_pred cccCHHHHHHHHHhcCCCEEEEec
Q psy2646 92 KAVDYQVAKEYADHLKIPFLETSA 115 (168)
Q Consensus 92 ~~v~~~~~~~~~~~~~~~~~~vSa 115 (168)
.. .+..+....++|+.+++.
T Consensus 255 ~G----~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 255 GG----AALSVRSVTGKPIKFIGV 274 (428)
T ss_pred cc----HHHHHHHHHCcCEEEEeC
Confidence 22 244566667888887774
No 383
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.20 E-value=1.1 Score=37.14 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=54.8
Q ss_pred EEEEEEEeCCCchhhccc-chh--hh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc
Q psy2646 19 RTLIVIWDTAGQERFRTI-TSS--YY--RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKA 93 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~-~~~--~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 93 (168)
.+.+.|.||+|....... ... .+ ......++|++.+. +..++...+..+... .+.-+|.||.|....
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~~-- 499 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETGR-- 499 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCccc--
Confidence 468999999996432211 000 01 11234667777764 244444444444322 467899999996432
Q ss_pred cCHHHHHHHHHhcCCCEEEEeccCCCCH-HHHHH
Q psy2646 94 VDYQVAKEYADHLKIPFLETSAKNGANV-EQAFL 126 (168)
Q Consensus 94 v~~~~~~~~~~~~~~~~~~vSa~~~~~i-~~i~~ 126 (168)
.-.........++++.+++ +|+.+ +++..
T Consensus 500 --lG~aLsv~~~~~LPI~yvt--~GQ~VPeDL~~ 529 (559)
T PRK12727 500 --FGSALSVVVDHQMPITWVT--DGQRVPDDLHR 529 (559)
T ss_pred --hhHHHHHHHHhCCCEEEEe--CCCCchhhhhc
Confidence 1234455666788888888 67776 44433
No 384
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=93.16 E-value=0.17 Score=45.73 Aligned_cols=70 Identities=23% Similarity=0.216 Sum_probs=44.6
Q ss_pred EEEEEeCCCchh--------hcccchhhh---------cCCcEEEEEEeCCChhh------H---HHHHHHHHHHHHhcC
Q psy2646 21 LIVIWDTAGQER--------FRTITSSYY---------RGAHGIIVVYDCTDQET------F---NNLKQWLEEIDRYAC 74 (168)
Q Consensus 21 ~l~l~Dt~G~~~--------~~~~~~~~~---------~~~d~~i~v~d~~~~~s------~---~~~~~~~~~i~~~~~ 74 (168)
+-.++||+|..- ....|..++ +..+|||+++|+++.-. . ..++.-+.++.....
T Consensus 162 ~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg 241 (1169)
T TIGR03348 162 EAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG 241 (1169)
T ss_pred CEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356999999421 122354443 34899999999986421 1 123334444444446
Q ss_pred CCCcEEEEEecCCCCC
Q psy2646 75 DNVNKLLVGNKNDQTS 90 (168)
Q Consensus 75 ~~~piivv~nK~Dl~~ 90 (168)
...||.|+.||+|+..
T Consensus 242 ~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 242 ARFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCCEEEEEecchhhc
Confidence 6899999999999754
No 385
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=93.13 E-value=0.72 Score=38.14 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEe--ccCCCCHHHHHHHHHHHHH
Q psy2646 59 FNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETS--AKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 59 ~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS--a~~~~~i~~i~~~l~~~~~ 133 (168)
+.++...++.+..+ ++|++|++||.|...+.+ .+.+++++.+.+++++.+. +.-|.|-.++-+.+++.+.
T Consensus 358 l~NL~RHIenvr~F---GvPvVVAINKFd~DTe~E--i~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 358 FANLERHIENIRKF---GVPVVVAINKFVTDTDAE--IAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred HHHHHHHHHHHHHc---CCCEEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 34444445555444 899999999999865433 3567789999998877443 5556688888888887665
No 386
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.05 E-value=0.5 Score=33.87 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=53.1
Q ss_pred EEEEEEEeCCCchhhccc----chhh--hcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 19 RTLIVIWDTAGQERFRTI----TSSY--YRGAHGIIVVYDCTDQE-TFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
++.+.|.||+|....... +..+ ....+-+++|+|++... ....+..++ ... + +-=++.||.|-...
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~---~~~---~-~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY---EAF---G-IDGLILTKLDETAR 155 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH---HHS---S-TCEEEEESTTSSST
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh---hcc---c-CceEEEEeecCCCC
Confidence 357899999996543211 1111 12577899999998643 233222222 111 1 23567999996432
Q ss_pred cccCHHHHHHHHHhcCCCEEEEeccCCCCHHH
Q psy2646 92 KAVDYQVAKEYADHLKIPFLETSAKNGANVEQ 123 (168)
Q Consensus 92 ~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 123 (168)
- -.+..+....+.|+-+++ +|+++++
T Consensus 156 ~----G~~l~~~~~~~~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 156 L----GALLSLAYESGLPISYIT--TGQRVDD 181 (196)
T ss_dssp T----HHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred c----ccceeHHHHhCCCeEEEE--CCCChhc
Confidence 2 234456667788888888 6776644
No 387
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=92.86 E-value=1.1 Score=30.86 Aligned_cols=88 Identities=11% Similarity=0.135 Sum_probs=54.0
Q ss_pred eEEEEEEEeCCCchhhcccchhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCCCCC---
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYY--RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNKNDQTSK--- 91 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~--- 91 (168)
..+.+.|.|+|+... ......+ ..+|.++++...+ ..+...+..++..+.+. +.+ ..++.|+.+....
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvv~N~~~~~~~~~~ 139 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV---NIPILGVVENMSYFVCPHCG 139 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhc---CCCeEEEEEcCCcccCCCCC
Confidence 457899999998632 1111222 5789999998766 45677777777777655 334 4678999874211
Q ss_pred --ccc-CHHHHHHHHHhcCCCEE
Q psy2646 92 --KAV-DYQVAKEYADHLKIPFL 111 (168)
Q Consensus 92 --~~v-~~~~~~~~~~~~~~~~~ 111 (168)
... .....+.+++.++.+++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T cd02037 140 KKIYIFGKGGGEKLAEELGVPLL 162 (169)
T ss_pred CcccccCCccHHHHHHHcCCCEE
Confidence 111 12345667776665543
No 388
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=92.67 E-value=1.9 Score=32.16 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=41.8
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcE-EEEEecCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK-LLVGNKND 87 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi-ivv~nK~D 87 (168)
..+.+.|+|++|.-.... ....+..+|.+|+++..+ ..++..+..++..+.... ..+.++ .++.|+.+
T Consensus 116 ~~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~-~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 116 DDYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAND-FDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred ccCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCc-hhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 357899999987532221 223467799999988664 445555555555543221 335664 47889976
No 389
>CHL00175 minD septum-site determining protein; Validated
Probab=92.58 E-value=0.87 Score=34.27 Aligned_cols=65 Identities=12% Similarity=-0.026 Sum_probs=43.7
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
.+.+.|+|+|+.-. ......+..+|.+++|++.+ ..++..+..++..+.... ...+.++.|+.+-
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~--~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANG--IYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcC--CCceEEEEeccCh
Confidence 57899999998642 23344567799998888765 456666666666665542 2346788899874
No 390
>KOG4273|consensus
Probab=92.56 E-value=0.84 Score=34.13 Aligned_cols=89 Identities=22% Similarity=0.384 Sum_probs=57.6
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC------------------cc---------
Q psy2646 41 YRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK------------------KA--------- 93 (168)
Q Consensus 41 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~------------------~~--------- 93 (168)
....-+++.+||.+....+..+..|+..-.-+. =--++++|||.|.... +.
T Consensus 76 a~pl~a~vmvfdlse~s~l~alqdwl~htdins--fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfg 153 (418)
T KOG4273|consen 76 AEPLQAFVMVFDLSEKSGLDALQDWLPHTDINS--FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFG 153 (418)
T ss_pred ccceeeEEEEEeccchhhhHHHHhhcccccccc--chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcc
Confidence 344568999999999888888899987542221 0124678999984210 00
Q ss_pred cC-----------------HHHHHHHHHhcCCCEEEEeccCC------------CCHHHHHHHHHHH
Q psy2646 94 VD-----------------YQVAKEYADHLKIPFLETSAKNG------------ANVEQAFLTMATE 131 (168)
Q Consensus 94 v~-----------------~~~~~~~~~~~~~~~~~vSa~~~------------~~i~~i~~~l~~~ 131 (168)
++ ....++++..+++.+++.++... +|++.+|.++..+
T Consensus 154 isetegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ah 220 (418)
T KOG4273|consen 154 ISETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAH 220 (418)
T ss_pred ccccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence 00 11234677888999999998433 4677788777644
No 391
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=92.54 E-value=2 Score=32.59 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=32.0
Q ss_pred CCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC--HHHHHHHHHhcCCCEEE
Q psy2646 43 GAHGIIVVYDCTDQE-TFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD--YQVAKEYADHLKIPFLE 112 (168)
Q Consensus 43 ~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~--~~~~~~~~~~~~~~~~~ 112 (168)
..|+|+|+++++... .-.++ ..+..+ ...+++|-|+.|.|.....++. ...+..-....++.+|.
T Consensus 113 RVH~cLYfI~pt~~~L~~~Di-~~mk~L----s~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~ 180 (281)
T PF00735_consen 113 RVHACLYFIPPTGHGLKPLDI-EFMKRL----SKRVNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFD 180 (281)
T ss_dssp -EEEEEEEE-TTSSSS-HHHH-HHHHHH----TTTSEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S--
T ss_pred CcceEEEEEcCCCccchHHHH-HHHHHh----cccccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeec
Confidence 479999999987531 11122 123333 3458899999999975433221 11222233445665554
No 392
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=92.11 E-value=1 Score=33.13 Aligned_cols=67 Identities=6% Similarity=-0.013 Sum_probs=44.9
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH---hcCCCCcEEEEEecCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDR---YACDNVNKLLVGNKND 87 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~---~~~~~~piivv~nK~D 87 (168)
+.+.+.|.|+||... ......+..+|.+|+.+..+. ..+..+..++..+.. ....+.|..++.|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~-~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTP-LDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcH-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 457899999999753 344556788999988877653 334444444444322 2245678889999986
No 393
>KOG1547|consensus
Probab=91.90 E-value=2.5 Score=31.57 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=53.1
Q ss_pred CCeEEEEEEEeCCCchhh---cccch-----------hhh--------------cCCcEEEEEEeCCChhhHHHHH-HHH
Q psy2646 16 ERTRTLIVIWDTAGQERF---RTITS-----------SYY--------------RGAHGIIVVYDCTDQETFNNLK-QWL 66 (168)
Q Consensus 16 ~~~~~~l~l~Dt~G~~~~---~~~~~-----------~~~--------------~~~d~~i~v~d~~~~~s~~~~~-~~~ 66 (168)
++-.+++.+.||||--.. ...|+ .|+ ...+++++.+..+.. ++.-++ .++
T Consensus 100 ~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDiefl 178 (336)
T KOG1547|consen 100 KGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFL 178 (336)
T ss_pred cceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHH
Confidence 466778999999983211 12221 121 136889999987743 222221 223
Q ss_pred HHHHHhcCCCCcEEEEEecCCCCC--CcccCHHHHHHHHHhcCCCEEEEeccCCCC
Q psy2646 67 EEIDRYACDNVNKLLVGNKNDQTS--KKAVDYQVAKEYADHLKIPFLETSAKNGAN 120 (168)
Q Consensus 67 ~~i~~~~~~~~piivv~nK~Dl~~--~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~ 120 (168)
..+.+. +.++-|+-|.|-.. ++..-.+.+++-...+++.+|+-.+.+...
T Consensus 179 krLt~v----vNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ 230 (336)
T KOG1547|consen 179 KRLTEV----VNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDL 230 (336)
T ss_pred HHHhhh----heeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccccccccch
Confidence 333322 56777888998432 222222233333445677777765554443
No 394
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=91.87 E-value=0.35 Score=33.30 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=38.0
Q ss_pred EEEEEEEeCCCchhhcccchh--------hhcCCcEEEEEEeCCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSS--------YYRGAHGIIVVYDCTDQETFN-NLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
..+..+.|++|...-..+... ..-..+++++++|+.+..... ....+..++.. .=+++.||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~------ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF------ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH------CCEEEEecccC
Confidence 467789999998543222221 233588999999987643321 22223333322 23779999996
No 395
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=91.57 E-value=1.3 Score=34.83 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=53.8
Q ss_pred ccccceeeeee----CCeEEEEEEEeCCCchhh---cccc-----------hhh--------------hcCCcEEEEEEe
Q psy2646 5 LPYQTLQNKKE----ERTRTLIVIWDTAGQERF---RTIT-----------SSY--------------YRGAHGIIVVYD 52 (168)
Q Consensus 5 ~~t~~~~~~~~----~~~~~~l~l~Dt~G~~~~---~~~~-----------~~~--------------~~~~d~~i~v~d 52 (168)
.||+.+..... ++-.+.|.+.||||-=.+ ...| +.| =...|+|+|.+.
T Consensus 63 ~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~ 142 (373)
T COG5019 63 SPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIR 142 (373)
T ss_pred CcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEec
Confidence 34554444433 467788999999983111 1111 111 124799999998
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC--HHHHHHHHHhcCCCEE
Q psy2646 53 CTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD--YQVAKEYADHLKIPFL 111 (168)
Q Consensus 53 ~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~--~~~~~~~~~~~~~~~~ 111 (168)
++.. .+..++ +..+++. ...+-+|-|+.|.|.....++. ...+.+....+++++|
T Consensus 143 Ptgh-~l~~~D--Ie~Mk~l-s~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf 199 (373)
T COG5019 143 PTGH-GLKPLD--IEAMKRL-SKRVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVF 199 (373)
T ss_pred CCCC-CCCHHH--HHHHHHH-hcccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCcee
Confidence 7643 112111 1222222 2356788899999975432221 1222333444566666
No 396
>PRK10818 cell division inhibitor MinD; Provisional
Probab=91.15 E-value=1.2 Score=33.17 Aligned_cols=67 Identities=9% Similarity=0.024 Sum_probs=44.0
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc------CCCCcEEEEEecCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA------CDNVNKLLVGNKNDQ 88 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------~~~~piivv~nK~Dl 88 (168)
.+.+.|.|+|+.-. ......+..+|.++++++.+. .++..+..++..+.... ..+.+..++.|..|.
T Consensus 113 ~yd~viiD~p~~~~--~~~~~~l~~ad~vivv~~p~~-~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~ 185 (270)
T PRK10818 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (270)
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHhCCeEEEEcCCCc-hHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence 57899999987643 223445788999999988874 45666666666653211 112345788898874
No 397
>PRK10867 signal recognition particle protein; Provisional
Probab=90.96 E-value=1.1 Score=36.30 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=49.0
Q ss_pred eEEEEEEEeCCCchhhcc-cc---hhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 18 TRTLIVIWDTAGQERFRT-IT---SSY--YRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
..+.+.|.||+|...... +. ..+ .-..+.+++|+|+... .++......+.... + ..-+|.||.|-...
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~--~-i~giIlTKlD~~~r 255 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL--G-LTGVILTKLDGDAR 255 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC--C-CCEEEEeCccCccc
Confidence 346799999999643211 11 111 1256788999998643 22222233332211 1 23567799995433
Q ss_pred cccCHHHHHHHHHhcCCCEEEEec
Q psy2646 92 KAVDYQVAKEYADHLKIPFLETSA 115 (168)
Q Consensus 92 ~~v~~~~~~~~~~~~~~~~~~vSa 115 (168)
.. .+..+....++|+.+++.
T Consensus 256 gG----~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 256 GG----AALSIRAVTGKPIKFIGT 275 (433)
T ss_pred cc----HHHHHHHHHCcCEEEEeC
Confidence 22 244556667788887774
No 398
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=90.82 E-value=0.57 Score=32.80 Aligned_cols=68 Identities=16% Similarity=0.047 Sum_probs=49.2
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
+.+.|.|+|+..... ....+..+|.+|++++.+. .+...+..+...+.........+.+|.|+.+..+
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGKKLKIIGVVINRVDPGN 162 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCC
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhccccceEEEEEeeeCCCc
Confidence 678999999864322 4567889999999998875 4577777777777655322135688999998654
No 399
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=90.65 E-value=1.2 Score=32.77 Aligned_cols=103 Identities=9% Similarity=0.165 Sum_probs=63.5
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCH
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQE--TFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDY 96 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~ 96 (168)
.+.+.|.|+.|... .+....+..+|.+|+=.-.+..+ .-..+..|+..+.+......|.-|+.|+++-.... ...
T Consensus 83 ~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~~-~~~ 159 (231)
T PF07015_consen 83 GFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARLT-RAQ 159 (231)
T ss_pred CCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchhh-HHH
Confidence 46789999998652 33455677899988877666432 22233345555443335679999999998732111 111
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCHHHHHH
Q psy2646 97 QVAKEYADHLKIPFLETSAKNGANVEQAFL 126 (168)
Q Consensus 97 ~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~ 126 (168)
....++.+ ++|++.+.-.+.....++|.
T Consensus 160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 160 RIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 12223333 48888888777777777766
No 400
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=90.59 E-value=1.3 Score=27.83 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=31.8
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHH
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLE 67 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 67 (168)
+.+.++|+|+... ......+..+|.++++++.+. .++..+..+++
T Consensus 40 ~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~~~~-~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQPSP-LDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCC--HHHHHHHHHCCEEEEeccCCH-HHHHHHHHHHH
Confidence 6788999998643 223367788999999987763 45666666555
No 401
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=90.53 E-value=4 Score=30.41 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=40.9
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcE-EEEEecCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK-LLVGNKNDQ 88 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi-ivv~nK~Dl 88 (168)
.+.+.|.|++|..... .....+..+|.+|+++..+ ..++..+..++..+.... ..+.++ .++.|+.+.
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 4789999998764211 1223477899999988765 334445544444443221 234553 478899873
No 402
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.86 E-value=5.5 Score=32.17 Aligned_cols=102 Identities=19% Similarity=0.218 Sum_probs=58.2
Q ss_pred EEEEEEEeCCCchhhcc----cchhhhc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 19 RTLIVIWDTAGQERFRT----ITSSYYR---GAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~----~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
...+.|.||+|...... ....++. ...-+++|++++-. ..++......+... + +--++.||.|-...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETSS 372 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEeccccccc
Confidence 36799999999754321 1122333 23467788888643 23333333333211 1 23688999996432
Q ss_pred cccCHHHHHHHHHhcCCCEEEEeccCCCCH-HHHHHHHHHHH
Q psy2646 92 KAVDYQVAKEYADHLKIPFLETSAKNGANV-EQAFLTMATEI 132 (168)
Q Consensus 92 ~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i-~~i~~~l~~~~ 132 (168)
- -.+..+....++|+.+++ +|.++ +++...=.+.+
T Consensus 373 ~----G~i~~~~~~~~lPv~yit--~Gq~VpdDl~~a~~~~l 408 (424)
T PRK05703 373 L----GSILSLLIESGLPISYLT--NGQRVPDDIKVANPEEL 408 (424)
T ss_pred c----cHHHHHHHHHCCCEEEEe--CCCCChhhhhhCCHHHH
Confidence 2 235566677788998888 77775 55554333333
No 403
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.54 E-value=2.9 Score=28.85 Aligned_cols=85 Identities=14% Similarity=0.068 Sum_probs=46.3
Q ss_pred EEEEEEEeCCCchhhcc----cchhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q psy2646 19 RTLIVIWDTAGQERFRT----ITSSY--YRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKK 92 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 92 (168)
...+.|.|++|...+.. ....+ ....+++++|+|...... ...+...+.+.. + ..-++.||.|.....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCCc
Confidence 45688899999742211 11111 234899999999865422 222333332221 2 356777999975432
Q ss_pred ccCHHHHHHHHHhcCCCEEEE
Q psy2646 93 AVDYQVAKEYADHLKIPFLET 113 (168)
Q Consensus 93 ~v~~~~~~~~~~~~~~~~~~v 113 (168)
. .....+...++|+..+
T Consensus 156 g----~~~~~~~~~~~p~~~~ 172 (173)
T cd03115 156 G----AALSIRAVTGKPIKFI 172 (173)
T ss_pred c----hhhhhHHHHCcCeEee
Confidence 2 2223555566666543
No 404
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=89.51 E-value=1.1 Score=30.44 Aligned_cols=58 Identities=21% Similarity=0.215 Sum_probs=37.1
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
.+.+.|.||+|.... ...++..+|-++++...+-.+.+.-.. ..+. ..--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~-----~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK---AGIM-----EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh---hhHh-----hhcCEEEEeCCC
Confidence 578999999996532 235889999999998776322222111 1111 223488999987
No 405
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=89.42 E-value=1.8 Score=30.91 Aligned_cols=68 Identities=19% Similarity=0.104 Sum_probs=43.2
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
..+.+.|.|+|+.... .......+.+|.+|++++.+.. +...+...+..+.... ...+-+|.||.|..
T Consensus 126 ~~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~~-~~~~~~~~~~~l~~~~--~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 126 KYFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGEI-KKRDVQKAKEQLEQTG--SNFLGVVLNKVDIS 193 (204)
T ss_pred hcCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCCC-CHHHHHHHHHHHHhCC--CCEEEEEEeCcccc
Confidence 3467899999974221 1123355679999999988643 4455555555554431 23467889999854
No 406
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=88.13 E-value=3.1 Score=32.35 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=56.4
Q ss_pred EEEEEEeCCCchhhcccchhhhc--------CCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYR--------GAHGIIVVYDCTDQETFNN-LKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
....+.++.|...-.+....+.. ..|++|-|+|+.+...... ....+..... .-=++++||.|+.+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-----~AD~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-----FADVIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH-----hCcEEEEecccCCC
Confidence 56678888887654333322222 3688999999987543222 2232222222 22489999999977
Q ss_pred CcccCHHHHHHHHHhcC--CCEEEEeccCCCCHHHHHH
Q psy2646 91 KKAVDYQVAKEYADHLK--IPFLETSAKNGANVEQAFL 126 (168)
Q Consensus 91 ~~~v~~~~~~~~~~~~~--~~~~~vSa~~~~~i~~i~~ 126 (168)
... .+........++ .+++.++. .+.+..+++.
T Consensus 160 ~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 160 AEE--LEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred HHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 543 233344444443 67787776 4444444443
No 407
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.98 E-value=4.4 Score=30.66 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=54.2
Q ss_pred EEEEEEEeCCCchhhcc-c---chhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q psy2646 19 RTLIVIWDTAGQERFRT-I---TSSYY--RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKK 92 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~-~---~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 92 (168)
++.+.|.||+|...... . +..++ ...+-++||+|++.. .+++..++..+.. -.+--++.||.|-...-
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~~~ 227 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETASS 227 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCCCc
Confidence 46899999999763221 1 11122 235678999998642 2233333444322 13347889999965432
Q ss_pred ccCHHHHHHHHHhcCCCEEEEeccCCCCHH
Q psy2646 93 AVDYQVAKEYADHLKIPFLETSAKNGANVE 122 (168)
Q Consensus 93 ~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~ 122 (168)
. .+..++...+.|+.+++ +|+++-
T Consensus 228 G----~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 228 G----ELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred c----HHHHHHHHHCcCEEEEe--CCCCCC
Confidence 2 23455666788888887 666654
No 408
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=87.21 E-value=10 Score=28.15 Aligned_cols=67 Identities=19% Similarity=0.135 Sum_probs=38.4
Q ss_pred eEEEEEEEeCCCchhhcccc-hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEE-EEEec
Q psy2646 18 TRTLIVIWDTAGQERFRTIT-SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKL-LVGNK 85 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pii-vv~nK 85 (168)
..+.+.|+|++|......+. .....-+|.+|+++.++. .++..+..++..+.... ..+.++. ++.|+
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~-~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~ 184 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM-MALYAANNICKGILKYAKSGGVRLGGLICNS 184 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch-HHHHHHHHHHHHHHHhCccCCCceEEEEEec
Confidence 35789999998764322221 222335999999887753 45655655555554432 1245554 44555
No 409
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.15 E-value=4.6 Score=31.48 Aligned_cols=95 Identities=22% Similarity=0.269 Sum_probs=55.7
Q ss_pred eEEEEEEEeCCCchhhcc-cc------hhhhcCC-----cEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q psy2646 18 TRTLIVIWDTAGQERFRT-IT------SSYYRGA-----HGIIVVYDCTDQ-ETFNNLKQWLEEIDRYACDNVNKLLVGN 84 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~-~~------~~~~~~~-----d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~n 84 (168)
+++.+.|.||+|.-.-.. +. ...++.. +=+++++|++-. +.+..++.+-+.+ ++ --++.|
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav------~l-~GiIlT 292 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV------GL-DGIILT 292 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc------CC-ceEEEE
Confidence 457899999999643211 11 1122222 337777799854 5566655433322 22 267799
Q ss_pred cCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHH
Q psy2646 85 KNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAF 125 (168)
Q Consensus 85 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~ 125 (168)
|.|-...-.+ +..++..+++|+.++. -|++++++-
T Consensus 293 KlDgtAKGG~----il~I~~~l~~PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 293 KLDGTAKGGI----ILSIAYELGIPIKFIG--VGEGYDDLR 327 (340)
T ss_pred ecccCCCcce----eeeHHHHhCCCEEEEe--CCCChhhcc
Confidence 9995432222 2356777889999987 566666653
No 410
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=86.90 E-value=11 Score=28.09 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=40.6
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcE-EEEEecCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK-LLVGNKNDQ 88 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi-ivv~nK~Dl 88 (168)
.+.+.|.|++|.-..... ...+..+|.+|+++..+ ..++..+..++..+.... ..+.++ .++.|+.+.
T Consensus 115 ~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~~-~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 115 DYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAND-FDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred cCCEEEEecCCccccCcc-ccchhhcCEEEEEecCc-hhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 578999999875321111 23467799998887553 345555555555443321 234553 578899874
No 411
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.89 E-value=7.3 Score=31.10 Aligned_cols=105 Identities=12% Similarity=0.118 Sum_probs=60.3
Q ss_pred eEEEEEEEeCCCchhhccc----chhhhcC--Cc-EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTI----TSSYYRG--AH-GIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~----~~~~~~~--~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
..+.+.|.||+|......+ ...++.. .+ -.+||+|++.. ..++...+..+... .+-=++.||.|-..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet~ 326 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDETT 326 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCCC
Confidence 3468999999997543221 1112222 23 58899999864 33333334433211 23477899999643
Q ss_pred CcccCHHHHHHHHHhcCCCEEEEeccCCCCH-HHHHHHHHHHHHH
Q psy2646 91 KKAVDYQVAKEYADHLKIPFLETSAKNGANV-EQAFLTMATEIKK 134 (168)
Q Consensus 91 ~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i-~~i~~~l~~~~~~ 134 (168)
.-. .+..+....+.|+.+++ +|+++ +++...=...+.+
T Consensus 327 ~~G----~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~~~~~~~~~ 365 (388)
T PRK12723 327 CVG----NLISLIYEMRKEVSYVT--DGQIVPHNISIAEPLTFIK 365 (388)
T ss_pred cch----HHHHHHHHHCCCEEEEe--CCCCChhhhhhCCHHHHHH
Confidence 322 23456666788888887 77777 5555443333333
No 412
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.66 E-value=6 Score=34.43 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=55.6
Q ss_pred EEEEEEEeCCCchhhcc-cch---hh--hcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 19 RTLIVIWDTAGQERFRT-ITS---SY--YRGAHGIIVVYDCTDQ-ETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
...+.|+||+|...... +.+ .. ....+-.++|+|++.. +.+.++ ...+...... -+-=+|.||.|-...
T Consensus 263 ~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~-~i~glIlTKLDEt~~ 338 (767)
T PRK14723 263 DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAGE-DVDGCIITKLDEATH 338 (767)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcccC-CCCEEEEeccCCCCC
Confidence 34689999999543211 111 11 1234568899998743 333333 2333221100 133677999996543
Q ss_pred cccCHHHHHHHHHhcCCCEEEEeccCCCCH-HHHHH
Q psy2646 92 KAVDYQVAKEYADHLKIPFLETSAKNGANV-EQAFL 126 (168)
Q Consensus 92 ~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i-~~i~~ 126 (168)
-. .+..+....++|+.+++ +|+++ +++..
T Consensus 339 ~G----~iL~i~~~~~lPI~yit--~GQ~VPdDL~~ 368 (767)
T PRK14723 339 LG----PALDTVIRHRLPVHYVS--TGQKVPEHLEL 368 (767)
T ss_pred cc----HHHHHHHHHCCCeEEEe--cCCCChhhccc
Confidence 22 24456667788998888 78887 66554
No 413
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=86.62 E-value=13 Score=28.92 Aligned_cols=111 Identities=20% Similarity=0.184 Sum_probs=57.2
Q ss_pred EEEEEEEeCCCchhhcccchhhh-cCCcEEEEEEeCCChhhHHHH---HHHHHHHHHhcCCCCcEEEEEecCCCCCCccc
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYY-RGAHGIIVVYDCTDQETFNNL---KQWLEEIDRYACDNVNKLLVGNKNDQTSKKAV 94 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v 94 (168)
.+.+.|+|++|......+..... .-++.+ +++...+..++..+ ...+..+........-+-+|.|+.|..+
T Consensus 147 ~~DyVliD~~gdv~~ggf~l~i~~~~ad~V-IVVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~---- 221 (329)
T cd02033 147 DFDYVLLDFLGDVVCGGFGLPIARDMAQKV-IVVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTG---- 221 (329)
T ss_pred cCCEEEEecCCcceeccccchhhhcCCceE-EEeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcc----
Confidence 46788899887543111111111 224444 44444455556443 3334444333111223688999998532
Q ss_pred CHHHHHHHHHhcCCCEEE----------------EeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 95 DYQVAKEYADHLKIPFLE----------------TSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~----------------vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
.+..+++.++++++. +-......+.+.|..+.+.+.+..+
T Consensus 222 ---~ie~~ae~lgi~vLg~IP~D~~V~~a~~~g~~~~~p~s~~a~~f~~LA~~I~~~~~ 277 (329)
T cd02033 222 ---EAQAFAAHAGIPILAAIPADEELRRKSAAYQIVGRPGTTWGPLFEQLATNVAEAPP 277 (329)
T ss_pred ---hHHHHHHHhCCCEEEECCCCHHHHHHHHcCCeecCCCCHHHHHHHHHHHHHHHhcC
Confidence 234555555544331 1112233577888888888877554
No 414
>KOG2655|consensus
Probab=86.58 E-value=8.3 Score=30.47 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=39.5
Q ss_pred CCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccC--HHHHHHHHHhcCCCEEEEeccCC
Q psy2646 43 GAHGIIVVYDCTDQ--ETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVD--YQVAKEYADHLKIPFLETSAKNG 118 (168)
Q Consensus 43 ~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~--~~~~~~~~~~~~~~~~~vSa~~~ 118 (168)
..|+|+|.+.++.. ..++ + ..++.. ...+.+|-|+-|.|......+. ...+.+-...+++++|.-.....
T Consensus 129 RVH~cLYFI~P~ghgL~p~D-i----~~Mk~l-~~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 129 RVHCCLYFISPTGHGLKPLD-I----EFMKKL-SKKVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred ceEEEEEEeCCCCCCCcHhh-H----HHHHHH-hccccccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 58999999987643 2222 2 222222 3467888899999975433221 12233344556677665554433
No 415
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=86.16 E-value=17 Score=29.63 Aligned_cols=77 Identities=18% Similarity=0.336 Sum_probs=46.1
Q ss_pred EEEEEEeCC--C--hhhHHHHH-HHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCC--
Q psy2646 46 GIIVVYDCT--D--QETFNNLK-QWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNG-- 118 (168)
Q Consensus 46 ~~i~v~d~~--~--~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~-- 118 (168)
|+++.-|.+ + ++.|..+. ....+++.. ++|++++.|-.+-... -+.+...++.+.++++++.+++..-
T Consensus 148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~i---gKPFvillNs~~P~s~--et~~L~~eL~ekY~vpVlpvnc~~l~~ 222 (492)
T PF09547_consen 148 GIVVTTDGSITDIPRENYVEAEERVIEELKEI---GKPFVILLNSTKPYSE--ETQELAEELEEKYDVPVLPVNCEQLRE 222 (492)
T ss_pred eEEEecCCCccCCChHHHHHHHHHHHHHHHHh---CCCEEEEEeCCCCCCH--HHHHHHHHHHHHhCCcEEEeehHHcCH
Confidence 455554443 1 24555543 455666655 7999999998873332 2334556677888999988876533
Q ss_pred CCHHHHHHH
Q psy2646 119 ANVEQAFLT 127 (168)
Q Consensus 119 ~~i~~i~~~ 127 (168)
..|..+++.
T Consensus 223 ~DI~~Il~~ 231 (492)
T PF09547_consen 223 EDITRILEE 231 (492)
T ss_pred HHHHHHHHH
Confidence 234444443
No 416
>KOG3929|consensus
Probab=85.70 E-value=1.9 Score=32.56 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=13.1
Q ss_pred CCcEEEEEecCCCCC
Q psy2646 76 NVNKLLVGNKNDQTS 90 (168)
Q Consensus 76 ~~piivv~nK~Dl~~ 90 (168)
.+|+++||.|.|...
T Consensus 190 P~PV~IVgsKYDvFq 204 (363)
T KOG3929|consen 190 PVPVVIVGSKYDVFQ 204 (363)
T ss_pred CCceEEeccchhhhc
Confidence 689999999999754
No 417
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.67 E-value=3.9 Score=32.67 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=54.5
Q ss_pred EEEEEEEeCCCchhhccc----chhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q psy2646 19 RTLIVIWDTAGQERFRTI----TSSYYR--GAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKK 92 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 92 (168)
.+.+.|.||+|....... ...+.. ..+.+++|++++. ...++..++..+.. -.+--++.||.|-...-
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~----l~i~glI~TKLDET~~~ 358 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAE----IPIDGFIITKMDETTRI 358 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCc----CCCCEEEEEcccCCCCc
Confidence 468999999998543221 111222 3466677776642 23333333333221 12347789999965432
Q ss_pred ccCHHHHHHHHHhcCCCEEEEeccCCCCHHH-HHHH
Q psy2646 93 AVDYQVAKEYADHLKIPFLETSAKNGANVEQ-AFLT 127 (168)
Q Consensus 93 ~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~-i~~~ 127 (168)
. .+..++...+.|+.+++ .|+++.+ ++..
T Consensus 359 G----~~Lsv~~~tglPIsylt--~GQ~VpdDi~~a 388 (407)
T PRK12726 359 G----DLYTVMQETNLPVLYMT--DGQNITENIFRP 388 (407)
T ss_pred c----HHHHHHHHHCCCEEEEe--cCCCCCcccCCC
Confidence 2 24456667788988888 6666643 4443
No 418
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=84.56 E-value=6.6 Score=31.67 Aligned_cols=91 Identities=14% Similarity=0.144 Sum_probs=53.2
Q ss_pred EEEEEEEeCCCchhhcc--c--chhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q psy2646 19 RTLIVIWDTAGQERFRT--I--TSSYY--RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKK 92 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~--~--~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 92 (168)
++.+.|.||+|...... + ...++ ...+.++||+|++-. ..++..+...+... ..--++.||.|-...-
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~----~idglI~TKLDET~k~ 393 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETASS 393 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC----CCCEEEEEcccCCCCc
Confidence 36789999999754221 1 11222 235678899987632 22333334444221 2337789999965432
Q ss_pred ccCHHHHHHHHHhcCCCEEEEeccCCCCH
Q psy2646 93 AVDYQVAKEYADHLKIPFLETSAKNGANV 121 (168)
Q Consensus 93 ~v~~~~~~~~~~~~~~~~~~vSa~~~~~i 121 (168)
. .+..++...++|+.+++ +|+++
T Consensus 394 G----~iLni~~~~~lPIsyit--~GQ~V 416 (436)
T PRK11889 394 G----ELLKIPAVSSAPIVLMT--DGQDV 416 (436)
T ss_pred c----HHHHHHHHHCcCEEEEe--CCCCC
Confidence 2 23456666788888887 66665
No 419
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=83.95 E-value=17 Score=27.71 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=40.7
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcE-EEEEecCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK-LLVGNKND 87 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi-ivv~nK~D 87 (168)
.+.+.+.|++|.-....+ ...+..||.+|++++.+ ..++..+..++..+.... ..+.+. .++.|+.+
T Consensus 115 ~yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 115 EYDIILFDVLGDVVCGGF-AAPLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred cCCEEEEecCCcceechh-hhhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 478999999875221111 12356799999988665 445666666555554331 223333 48889987
No 420
>PRK11670 antiporter inner membrane protein; Provisional
Probab=83.48 E-value=14 Score=29.31 Aligned_cols=67 Identities=15% Similarity=0.027 Sum_probs=38.1
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLVGNKNDQ 88 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl 88 (168)
+.+.+.|+|+|+.-.-..+.-..+-.+|++|++...... ++.++...+..+. ..+.|+ -+|.|+.+.
T Consensus 214 ~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~-s~~da~~~i~~~~---~~~~~ilGiV~Nm~~~ 281 (369)
T PRK11670 214 PDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDI-ALIDAKKGIVMFE---KVEVPVLGIVENMSMH 281 (369)
T ss_pred ccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchh-HHHHHHHHHHHHh---ccCCCeEEEEEcCCcc
Confidence 457889999986421111111223358998888866543 3444444343332 235666 478898764
No 421
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=83.32 E-value=12 Score=30.11 Aligned_cols=98 Identities=17% Similarity=0.268 Sum_probs=57.8
Q ss_pred eEEEEEEEeCCCchhhcccc----hhhhcC--CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTIT----SSYYRG--AHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~----~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
..+.+.|.||.|...++... ..++.. ..-+.||++++.. ..++...+..+... + .--++.||.|-...
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~---~-i~~~I~TKlDET~s 353 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF---P-IDGLIFTKLDETTS 353 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC---C-cceeEEEcccccCc
Confidence 44579999999987654422 223332 3346667777653 45566555555333 1 12677999995432
Q ss_pred cccCHHHHHHHHHhcCCCEEEEeccCCCCH-HHHHHH
Q psy2646 92 KAVDYQVAKEYADHLKIPFLETSAKNGANV-EQAFLT 127 (168)
Q Consensus 92 ~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i-~~i~~~ 127 (168)
-+ ....+....+.|+.+++ +|+++ ++++..
T Consensus 354 ~G----~~~s~~~e~~~PV~YvT--~GQ~VPeDI~va 384 (407)
T COG1419 354 LG----NLFSLMYETRLPVSYVT--NGQRVPEDIVVA 384 (407)
T ss_pred hh----HHHHHHHHhCCCeEEEe--CCCCCCchhhhc
Confidence 11 23345556677877776 77776 555543
No 422
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=83.25 E-value=13 Score=25.99 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=57.1
Q ss_pred hcCCcEEEEEEeCCCh-------hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEE
Q psy2646 41 YRGAHGIIVVYDCTDQ-------ETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLET 113 (168)
Q Consensus 41 ~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~v 113 (168)
++....=.+++|.+|- +-..++..|+..+.+.- ....+++|-|-.-... .....++..+.+.++++++.-
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~-~~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h 112 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQF-GKDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRH 112 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHC-CCCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEe
Confidence 5555555566777662 22456778888887652 1225888888652211 234567778889999999988
Q ss_pred eccCCCCHHHHHHHHH
Q psy2646 114 SAKNGANVEQAFLTMA 129 (168)
Q Consensus 114 Sa~~~~~i~~i~~~l~ 129 (168)
+++...+..++...+.
T Consensus 113 ~~kKP~~~~~i~~~~~ 128 (168)
T PF09419_consen 113 RAKKPGCFREILKYFK 128 (168)
T ss_pred CCCCCccHHHHHHHHh
Confidence 8988877777766553
No 423
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=82.99 E-value=9.6 Score=30.29 Aligned_cols=99 Identities=17% Similarity=0.138 Sum_probs=52.8
Q ss_pred EEEEEEEeCCCchhhcccchh---hh---cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCC--CcEEEEEecCCCC
Q psy2646 19 RTLIVIWDTAGQERFRTITSS---YY---RGAHGIIVVYDCTDQ-ETFNNLKQWLEEIDRYACDN--VNKLLVGNKNDQT 89 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~~~~---~~---~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~ 89 (168)
+..+.|+||+|...+...... .+ ....-.++|++++.. +...++..-+.......... ..-=++.||.|-.
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 357899999997643322111 12 223456889988753 33333322222221110000 1236778999964
Q ss_pred CCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHH
Q psy2646 90 SKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQ 123 (168)
Q Consensus 90 ~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~ 123 (168)
..-. .+..+....++|+.+++ +|+++-+
T Consensus 295 ~~~G----~~l~~~~~~~lPi~yvt--~Gq~VPe 322 (374)
T PRK14722 295 SNLG----GVLDTVIRYKLPVHYVS--TGQKVPE 322 (374)
T ss_pred CCcc----HHHHHHHHHCcCeEEEe--cCCCCCc
Confidence 4222 34456666788888887 6666543
No 424
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=82.77 E-value=8.2 Score=31.17 Aligned_cols=104 Identities=13% Similarity=0.100 Sum_probs=58.8
Q ss_pred EEEEEEEeCCCchhhccc----chhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q psy2646 19 RTLIVIWDTAGQERFRTI----TSSYY--RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKK 92 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 92 (168)
...+.+.||+|....... ...+. ...+-.+||+|++.. .+.+..+...+... -.-=++.||.|-...-
T Consensus 269 ~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~----~~~~~I~TKlDEt~~~ 342 (420)
T PRK14721 269 GKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGH----GIHGCIITKVDEAASL 342 (420)
T ss_pred CCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeeeCCCCc
Confidence 346889999996542211 11111 124567899998842 22333333333211 2336789999964422
Q ss_pred ccCHHHHHHHHHhcCCCEEEEeccCCCCH-HHHHHHHHHHHHH
Q psy2646 93 AVDYQVAKEYADHLKIPFLETSAKNGANV-EQAFLTMATEIKK 134 (168)
Q Consensus 93 ~v~~~~~~~~~~~~~~~~~~vSa~~~~~i-~~i~~~l~~~~~~ 134 (168)
. .+..+....++|+.+++ +|.++ +++...-...+.+
T Consensus 343 G----~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~a~~~~lv~ 379 (420)
T PRK14721 343 G----IALDAVIRRKLVLHYVT--NGQKVPEDLHEANSRYLLH 379 (420)
T ss_pred c----HHHHHHHHhCCCEEEEE--CCCCchhhhhhCCHHHHHH
Confidence 2 24456667788998888 78877 5655543333333
No 425
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=82.08 E-value=20 Score=27.35 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=59.0
Q ss_pred EEEEEEEeCCCchhh-cccchhhhcCCcEEEEEEeCCChhhHHHHHHHHH---HHHHhcCCCCcEEEEEecCCCCCCccc
Q psy2646 19 RTLIVIWDTAGQERF-RTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLE---EIDRYACDNVNKLLVGNKNDQTSKKAV 94 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~i~~~~~~~~piivv~nK~Dl~~~~~v 94 (168)
.+.+.|+|++|.-.- ..........+|.+|++.+.+ ..++..+..+.. .+......-.++.++.|+.+...
T Consensus 122 ~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~e-~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~---- 196 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSND-RQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSG---- 196 (296)
T ss_pred cCCEEEEecCCCccccccccchhhhhCCeEEEEecch-HHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCcc----
Confidence 588999998764210 011122234688887776554 334544444333 33332111235678899987421
Q ss_pred CHHHHHHHHHhcCCCEEEEe----------------ccCCC-CHHHHHHHHHHHHHHHhcc
Q psy2646 95 DYQVAKEYADHLKIPFLETS----------------AKNGA-NVEQAFLTMATEIKKRVTK 138 (168)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~vS----------------a~~~~-~i~~i~~~l~~~~~~~~~~ 138 (168)
...++++.++++++..- ..... ...+.|..+.+.+......
T Consensus 197 ---~~~~~~~~~~i~vLg~IP~d~~i~~~~~~~~~~~~~~~~~~~~~f~~la~~i~~~~~~ 254 (296)
T TIGR02016 197 ---EAQAFAREVGIPVLAAIPADEELRRKSLAYQIVGSHATPRFGKLFEELAGNVADAPPL 254 (296)
T ss_pred ---HHHHHHHHcCCCeEEECCCCHHHHHHhcCCCeeecCCCHHHHHHHHHHHHHHHHhcCC
Confidence 23455555554433210 01112 2668888888888776443
No 426
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=82.07 E-value=6.4 Score=32.41 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=53.2
Q ss_pred EEEEEEeCCCchhhcc-cch--hhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcc
Q psy2646 20 TLIVIWDTAGQERFRT-ITS--SYYRG---AHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKA 93 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~-~~~--~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~ 93 (168)
..+.+.||+|...... +.. ..+.. ..-.++|+|.+.. ...+......+.. ...--++.||.|-...-
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~~----~~~~g~IlTKlDet~~~- 407 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYRG----PGLAGCILTKLDEAASL- 407 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhcc----CCCCEEEEeCCCCcccc-
Confidence 4688999999543221 101 11111 2236788888743 2222222222211 12346778999954321
Q ss_pred cCHHHHHHHHHhcCCCEEEEeccCCCCH-HHHHHH
Q psy2646 94 VDYQVAKEYADHLKIPFLETSAKNGANV-EQAFLT 127 (168)
Q Consensus 94 v~~~~~~~~~~~~~~~~~~vSa~~~~~i-~~i~~~ 127 (168)
-.+..+....++|+.+++ +|+++ +++...
T Consensus 408 ---G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a 437 (484)
T PRK06995 408 ---GGALDVVIRYKLPLHYVS--NGQRVPEDLHLA 437 (484)
T ss_pred ---hHHHHHHHHHCCCeEEEe--cCCCChhhhccC
Confidence 234566677789998888 78888 665543
No 427
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=81.25 E-value=1.7 Score=36.02 Aligned_cols=72 Identities=13% Similarity=0.131 Sum_probs=40.5
Q ss_pred CCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEe--ccCCCCHHHHHHHHHHHHHHHhccCCCCCCchh
Q psy2646 74 CDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETS--AKNGANVEQAFLTMATEIKKRVTKDEKPSSESD 147 (168)
Q Consensus 74 ~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS--a~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~ 147 (168)
..++|+||.+|+..-....+ .+.+.++++.+++++..+. ++=|.|-.++-+.+++.+.+..+...++-+...
T Consensus 369 ~fGvpvVVAIN~F~tDT~aE--i~~I~~~~~~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~ee~~~~~fk~LY~l~ 442 (557)
T PF01268_consen 369 KFGVPVVVAINRFPTDTDAE--IELIRELCEELGVRAAVSEHWAKGGEGAVELAEAVVEACEEEEPSNFKPLYDLE 442 (557)
T ss_dssp CTT--EEEEEE--TTS-HHH--HHHHHHHCCCCCEEEEEC-HHHHGGGGCHHHHHHHHHH-HHHS------SS-TT
T ss_pred hcCCCeEEEecCCCCCCHHH--HHHHHHHHHhCCCCEEEechhhcccccHHHHHHHHHHHhhccCCCCcCcccCCc
Confidence 45899999999987544333 2455677788887744443 566778899999999888666665555544443
No 428
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=81.13 E-value=8.4 Score=31.82 Aligned_cols=58 Identities=10% Similarity=0.046 Sum_probs=42.1
Q ss_pred CCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEe--ccCCCCHHHHHHHHHHHHH
Q psy2646 74 CDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETS--AKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 74 ~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS--a~~~~~i~~i~~~l~~~~~ 133 (168)
..+.|++|.+|+..-..+.+ .+.+.++++..++++..+. +.-|.|-.++-+.+++.+.
T Consensus 354 ~fg~p~VVaiN~F~~Dt~~E--i~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 354 KFGVPVVVAINKFSTDTDAE--LALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred HcCCCeEEEecCCCCCCHHH--HHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 34899999999997554433 3456678888888766553 5556788888888887665
No 429
>KOG3022|consensus
Probab=80.07 E-value=24 Score=26.93 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=63.8
Q ss_pred eCCeEEEEEEEeCCC-chhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEE-ecC--CCCC
Q psy2646 15 EERTRTLIVIWDTAG-QERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVG-NKN--DQTS 90 (168)
Q Consensus 15 ~~~~~~~l~l~Dt~G-~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~-nK~--Dl~~ 90 (168)
++.....+.+.|||. ..+-+-..-.+++.+++.|+|-.. ..-++.++++-....... ++|++-++ |.. +-+.
T Consensus 152 vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTP-Q~vAl~Dv~K~i~fc~K~---~I~ilGvVENMs~f~Cp~ 227 (300)
T KOG3022|consen 152 VDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTP-QEVALQDVRKEIDFCRKA---GIPILGVVENMSGFVCPK 227 (300)
T ss_pred CCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCc-hhhhhHHHHhhhhhhhhc---CCceEEEEeccccccCCC
Confidence 456778899999984 333232334566666887666433 334566666655544433 68876544 321 1111
Q ss_pred C----cccCHHHHHHHHHhcCCCEEE------------------EeccCCCCHHHHHHHHHHHHHHHhc
Q psy2646 91 K----KAVDYQVAKEYADHLKIPFLE------------------TSAKNGANVEQAFLTMATEIKKRVT 137 (168)
Q Consensus 91 ~----~~v~~~~~~~~~~~~~~~~~~------------------vSa~~~~~i~~i~~~l~~~~~~~~~ 137 (168)
. ..+...-++.+++.++++++- +-..-..-..+.|..++..+.+...
T Consensus 228 C~~~~~iF~~gGg~~l~~~~glp~Lg~iPld~~i~~~~d~G~~~v~~~p~s~~~~af~~i~~~i~~~~~ 296 (300)
T KOG3022|consen 228 CGHSTNIFGSGGGERLAEELGLPLLGSLPLDPLIAESSDSGVPFVEEYPDSPASEAFEDIAEKLVEQLS 296 (300)
T ss_pred CCCcceeccCccHHHHHHHcCCCeEeecCCCHHHHHhccCCCeeEecCCCchHHHHHHHHHHHHHHhhc
Confidence 1 112222345677777665441 1111223355677777777766544
No 430
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=79.95 E-value=23 Score=26.50 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=41.1
Q ss_pred eEEEEEEEeCCCchhhc-ccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEecCC
Q psy2646 18 TRTLIVIWDTAGQERFR-TITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKL-LVGNKND 87 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~D 87 (168)
+.+.+.+.|++|..... ......+..+|.+++++..+ +.++..+..++..+......+.++. ++.|+.+
T Consensus 115 ~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~-~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 115 DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGE-LMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred ccCCEEEEecCCCeeECCEeccccccccceEEEecCch-HHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 34788999998763212 11122234788888887653 4566666666666654323456653 7788765
No 431
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=79.39 E-value=7 Score=30.90 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=30.2
Q ss_pred CCCcEEEEEecCCCCCCcccC--HHHHHHHHHhcCCCEEEEeccC
Q psy2646 75 DNVNKLLVGNKNDQTSKKAVD--YQVAKEYADHLKIPFLETSAKN 117 (168)
Q Consensus 75 ~~~piivv~nK~Dl~~~~~v~--~~~~~~~~~~~~~~~~~vSa~~ 117 (168)
..+|+++++||.|...... . ......++...+.+++.+||.-
T Consensus 205 t~KP~lyvaN~~e~~~~~~-n~~~~~i~~~~~~~~~~vV~~sA~~ 248 (372)
T COG0012 205 TAKPMLYVANVSEDDLANL-NEYVKRLKELAAKENAEVVPVSAAI 248 (372)
T ss_pred hcCCeEEEEECCcccccch-hHHHHHHHHHhhhcCCcEEEeeHHH
Confidence 4789999999999765332 2 2445556666677899999863
No 432
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=78.87 E-value=12 Score=31.33 Aligned_cols=58 Identities=9% Similarity=0.071 Sum_probs=40.7
Q ss_pred CCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEe--ccCCCCHHHHHHHHHHHHH
Q psy2646 74 CDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETS--AKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 74 ~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS--a~~~~~i~~i~~~l~~~~~ 133 (168)
..+.|++|.+|+..-....+ .+.+.+++...++.+..+. +.-|.|-.++-+.+++.+.
T Consensus 399 ~fg~pvVVaiN~F~~Dt~~E--i~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 399 KSGINPVVCINAFYTDTHAE--IAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDACN 458 (587)
T ss_pred HcCCCeEEEeCCCCCCCHHH--HHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhh
Confidence 34899999999997544333 3456678888887666443 4555678888888886655
No 433
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=78.74 E-value=7.4 Score=29.94 Aligned_cols=83 Identities=19% Similarity=0.195 Sum_probs=50.5
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHH
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQ 97 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~ 97 (168)
+.+.+.|+|+|+... ......+..+|.++++++.+ ..++..+..++..+... +..+.++.|.... ..+..
T Consensus 203 ~~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~-~~sl~~a~r~l~~l~~~---~~~~~lVv~~~~~---~~~~~- 272 (322)
T TIGR03815 203 RGGDLVVVDLPRRLT--PAAETALESADLVLVVVPAD-VRAVAAAARVCPELGRR---NPDLRLVVRGPAP---AGLDP- 272 (322)
T ss_pred hcCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCc-HHHHHHHHHHHHHHhhh---CCCeEEEEeCCCC---CCCCH-
Confidence 346789999998743 33456788999999998765 34667777777666543 2234555665321 12232
Q ss_pred HHHHHHHhcCCCEEE
Q psy2646 98 VAKEYADHLKIPFLE 112 (168)
Q Consensus 98 ~~~~~~~~~~~~~~~ 112 (168)
.++.+.++.+++.
T Consensus 273 --~~i~~~lg~~v~~ 285 (322)
T TIGR03815 273 --EEIAESLGLPLLG 285 (322)
T ss_pred --HHHHHHhCCCcee
Confidence 2344455655554
No 434
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.25 E-value=8.6 Score=23.99 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=11.9
Q ss_pred chhhhcCCcEEEEEEeCCChhh
Q psy2646 37 TSSYYRGAHGIIVVYDCTDQET 58 (168)
Q Consensus 37 ~~~~~~~~d~~i~v~d~~~~~s 58 (168)
.+.-+..+|.||++.|..+-..
T Consensus 42 l~~~i~~aD~VIv~t~~vsH~~ 63 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSHNA 63 (97)
T ss_pred HHHhcCCCCEEEEEeCCcChHH
Confidence 3445555666666665555433
No 435
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=77.33 E-value=5.9 Score=27.53 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=10.3
Q ss_pred EEEEeccCCCCHHHHHHHHHHH
Q psy2646 110 FLETSAKNGANVEQAFLTMATE 131 (168)
Q Consensus 110 ~~~vSa~~~~~i~~i~~~l~~~ 131 (168)
..-..-.+|.|-.-++++|...
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4444444555554455544433
No 436
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=77.27 E-value=14 Score=29.42 Aligned_cols=69 Identities=12% Similarity=0.036 Sum_probs=41.0
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc------CCCCcEEEEEecCCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA------CDNVNKLLVGNKNDQT 89 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------~~~~piivv~nK~Dl~ 89 (168)
..+.+.|+|+|+.-. .+....+.-+|.+|+.+..+ ..++..+..++..+.... ..+..+-++.|+.|..
T Consensus 233 ~~YD~IiIDtpP~l~--~~t~nal~AaD~viiP~~~~-~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (388)
T PRK13705 233 HDYDVIVIDSAPNLG--IGTINVVCAADVLIVPTPAE-LFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNS 307 (388)
T ss_pred ccCCEEEEECCCchh--HHHHHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCC
Confidence 357899999998743 33445666789999888664 334444444433332211 1123355789998853
No 437
>KOG0780|consensus
Probab=76.74 E-value=8.3 Score=30.91 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=27.6
Q ss_pred CeEEEEEEEeCCCchhh-cccchh-----hhcCCcEEEEEEeCCChhh
Q psy2646 17 RTRTLIVIWDTAGQERF-RTITSS-----YYRGAHGIIVVYDCTDQET 58 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~-~~~~~~-----~~~~~d~~i~v~d~~~~~s 58 (168)
.+++.+.|.||+|...- .++.+. -.-..|-+|||.|++-...
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA 228 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence 45688999999996531 111111 1235789999999986544
No 438
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=76.73 E-value=9.3 Score=27.61 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=42.2
Q ss_pred EEEEEEeCCCchhh-cccchhhhcC--CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 20 TLIVIWDTAGQERF-RTITSSYYRG--AHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~-~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
+.+.|+|+|..... ..+....+.. ++.+++|+..+ ..+...+...+..+.... -....+|.|+....
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~-~~s~~~~~~~l~~l~~~~--~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE-KLPLYETERAITELALYG--IPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCC-ccHHHHHHHHHHHHHHCC--CCCCEEEEeCCcCc
Confidence 78999999975322 2222233333 47888888776 446677777777776552 12347888998754
No 439
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=76.01 E-value=13 Score=28.77 Aligned_cols=85 Identities=12% Similarity=0.188 Sum_probs=46.6
Q ss_pred EEEEEEeCCCchhhcccchhhhc--------CCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 20 TLIVIWDTAGQERFRTITSSYYR--------GAHGIIVVYDCTDQETFNN-LKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
....+.++.|......+...++. ..+++|.++|+.+...... ......++. ..=+|+.||.|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~------~AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG------YADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH------hCCEEEEeccccCC
Confidence 45678889887654444333321 2588999999986432211 111122221 22388999999875
Q ss_pred CcccCHHHHHHHHHhcC--CCEEEEe
Q psy2646 91 KKAVDYQVAKEYADHLK--IPFLETS 114 (168)
Q Consensus 91 ~~~v~~~~~~~~~~~~~--~~~~~vS 114 (168)
.. +......+..+ .+++.++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec
Confidence 31 33444444433 4566543
No 440
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=75.91 E-value=11 Score=28.25 Aligned_cols=62 Identities=21% Similarity=0.170 Sum_probs=38.8
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEe
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLVGN 84 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~n 84 (168)
..+.+.|+|+|..... .-...+...+|++|+|+.... .+...+...+..+... +.++ -+|.|
T Consensus 211 ~~yD~ViiD~pp~~~~-~d~~~~~~~~d~vilV~~~~~-t~~~~~~~~~~~l~~~---~~~~~G~VlN 273 (274)
T TIGR03029 211 GDYDVVIVDTPSAEHS-SDAQIVATRARGTLIVSRVNE-TRLHELTSLKEHLSGV---GVRVVGAVLN 273 (274)
T ss_pred hcCCEEEEeCCCcccc-cHHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 3467899999976432 223445678999999987764 3556666666666543 3443 44444
No 441
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=75.15 E-value=26 Score=29.80 Aligned_cols=99 Identities=9% Similarity=0.038 Sum_probs=58.7
Q ss_pred eeeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCc
Q psy2646 13 KKEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKK 92 (168)
Q Consensus 13 ~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 92 (168)
..+.++.-++.|++.| ...+.+. ...+-||.|++++|.+-.-.++. ..++..+..+. -..++.|+++.|+....
T Consensus 106 TvvsgK~RRiTflEcp--~Dl~~mi-DvaKIaDLVlLlIdgnfGfEMET-mEFLnil~~HG--mPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 106 TVVSGKTRRITFLECP--SDLHQMI-DVAKIADLVLLLIDGNFGFEMET-MEFLNILISHG--MPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred EEeecceeEEEEEeCh--HHHHHHH-hHHHhhheeEEEeccccCceehH-HHHHHHHhhcC--CCceEEEEeecccccCh
Confidence 3456888899999998 3344443 34677999999999986522222 23344444442 24578889999997542
Q ss_pred ccCHHHHHH------HHHhc-CCCEEEEeccCC
Q psy2646 93 AVDYQVAKE------YADHL-KIPFLETSAKNG 118 (168)
Q Consensus 93 ~v~~~~~~~------~~~~~-~~~~~~vSa~~~ 118 (168)
. +...... +.+-+ |..+|.+|...+
T Consensus 180 s-tLr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 180 S-TLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred H-HHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 2 1111111 11222 567888886554
No 442
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=74.70 E-value=20 Score=29.11 Aligned_cols=84 Identities=18% Similarity=0.121 Sum_probs=45.8
Q ss_pred EEEEEEEeCCCchhhcc-cchh-----hhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcE-EEEEecCCCCC
Q psy2646 19 RTLIVIWDTAGQERFRT-ITSS-----YYRGAHGIIVVYDCTDQE-TFNNLKQWLEEIDRYACDNVNK-LLVGNKNDQTS 90 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl~~ 90 (168)
.+.+.|.||+|...... +... -.-+.|=++||+|+.-.+ ....+..+-+. .++ =|+.||.|-..
T Consensus 182 ~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~--------l~itGvIlTKlDGda 253 (451)
T COG0541 182 GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEA--------LGITGVILTKLDGDA 253 (451)
T ss_pred CCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhh--------cCCceEEEEcccCCC
Confidence 35799999999754332 1111 234678899999997543 33332222222 222 56789999643
Q ss_pred CcccCHHHHHHHHHhcCCCEEEEe
Q psy2646 91 KKAVDYQVAKEYADHLKIPFLETS 114 (168)
Q Consensus 91 ~~~v~~~~~~~~~~~~~~~~~~vS 114 (168)
.-.. +.......+.|+-++.
T Consensus 254 RGGa----ALS~~~~tg~PIkFiG 273 (451)
T COG0541 254 RGGA----ALSARAITGKPIKFIG 273 (451)
T ss_pred cchH----HHhhHHHHCCCeEEEe
Confidence 2221 2223334456666555
No 443
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=74.36 E-value=34 Score=25.56 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=36.8
Q ss_pred EEEEEEEeCCCchhhccc-chhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEE-EEEec
Q psy2646 19 RTLIVIWDTAGQERFRTI-TSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKL-LVGNK 85 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pii-vv~nK 85 (168)
.+.+.|+|++|..-...+ ......-+|.+|+++.++ +.++..+..++..+.... ..+.++. ++.|+
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecch-HHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 578999999875422221 122234689999888666 345666555555443321 1244444 44554
No 444
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.87 E-value=25 Score=28.55 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=51.6
Q ss_pred eEEEEEEEeCCCchhhcc----cchhhhc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 18 TRTLIVIWDTAGQERFRT----ITSSYYR-----GAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
....+.|.||+|...... .+..+++ ...-.+||+|++-.. +++......+... -+-=++.||.|-
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~----~~~glIlTKLDE 371 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL----NYRRILLTKLDE 371 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC----CCCEEEEEcccC
Confidence 356789999999743211 1122222 234678899987542 2223333333211 234778999996
Q ss_pred CCCcccCHHHHHHHHHhcCCCEEEEeccCCCCH
Q psy2646 89 TSKKAVDYQVAKEYADHLKIPFLETSAKNGANV 121 (168)
Q Consensus 89 ~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i 121 (168)
...-. .+..+....+.|+.+++ .|+++
T Consensus 372 t~~~G----~il~i~~~~~lPI~ylt--~GQ~V 398 (432)
T PRK12724 372 ADFLG----SFLELADTYSKSFTYLS--VGQEV 398 (432)
T ss_pred CCCcc----HHHHHHHHHCCCEEEEe--cCCCC
Confidence 43222 24456666788888887 55554
No 445
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=73.47 E-value=8.6 Score=33.37 Aligned_cols=68 Identities=15% Similarity=0.010 Sum_probs=44.5
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
+.+.+.|+|+|+...... .......+|++|+++..+ ..+...+...+..+.... ....-+|.|+.|..
T Consensus 654 ~~yD~IiID~pp~~~~~d-~~~l~~~~D~vl~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~GvvlN~~~~~ 721 (754)
T TIGR01005 654 LYSDCVVVDVGTADPVRD-MRAAARLAIIMLLVTAYD-RVVVECGRADAQGISRLN--GEVTGVFLNMLDPN 721 (754)
T ss_pred hhCCEEEEcCCCcchhHH-HHHhhhhCCeEEEEEEeC-ceeHHHHHHHHHHHHhcC--CceEEEEecCCChh
Confidence 457899999998753221 223455799999998754 345666666666665442 23346899999853
No 446
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=73.14 E-value=25 Score=28.05 Aligned_cols=69 Identities=16% Similarity=-0.014 Sum_probs=40.1
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH---HH-h--cCCCCcEEEEEecCCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI---DR-Y--ACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i---~~-~--~~~~~piivv~nK~Dl~ 89 (168)
..+.+.|+|+|+.-.+ +....+..+|.+|+.+.++- .++..+..++..+ .. . ......+-++.|+.|..
T Consensus 233 ~~YD~IlID~pPslg~--lt~nAL~AAd~vliPv~~~~-~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (387)
T PHA02519 233 DNYDIIVIDSAPNLGT--GTINVVCAADVIVVATPAEL-FDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLT 307 (387)
T ss_pred ccCCEEEEECCCCccH--HHHHHHHHhCEEEEecCCcH-HHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCC
Confidence 4578999999998543 34456667898888876642 2333333222222 11 1 01133455789999853
No 447
>KOG2485|consensus
Probab=71.88 E-value=12 Score=28.94 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=31.7
Q ss_pred hhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 38 SSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 38 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
...++..|.+|=+=|+.-|-|-.. ..++.+ .+..|-|+|.||+||.+.
T Consensus 41 ~~~l~~~D~iiEvrDaRiPLssrn--~~~~~~----~~~k~riiVlNK~DLad~ 88 (335)
T KOG2485|consen 41 QNRLPLVDCIIEVRDARIPLSSRN--ELFQDF----LPPKPRIIVLNKMDLADP 88 (335)
T ss_pred HhhcccccEEEEeeccccCCcccc--HHHHHh----cCCCceEEEEecccccCc
Confidence 445777999999988876533221 122222 236788999999999764
No 448
>KOG1534|consensus
Probab=71.39 E-value=8.4 Score=28.32 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=38.6
Q ss_pred EEEEEeCCCchhhc-c--cchhhhc-----C-CcEEEEEEeCCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCC
Q psy2646 21 LIVIWDTAGQERFR-T--ITSSYYR-----G-AHGIIVVYDCTD-QETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTS 90 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~-~--~~~~~~~-----~-~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 90 (168)
...++|.|||-+.. . ..+..++ + --++++++|..= .++...+.-.+..+..+..-.+|.|=|.+|+||..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 57799999996532 1 1122211 1 234666666542 13333333333333333233789999999999854
No 449
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=70.95 E-value=19 Score=28.94 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=40.7
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHH-------HHHHhcCCC--CcE-EEEEecCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLE-------EIDRYACDN--VNK-LLVGNKND 87 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-------~i~~~~~~~--~pi-ivv~nK~D 87 (168)
..+.+.|+|+|+.-.+ +....+..+|.+|+.+.++- .++..+..++. .+... ..+ ..+ -++.|+.|
T Consensus 250 ~~yD~IiIDtpP~l~~--~t~~al~aAd~viiPv~p~~-~~~~~~~~~l~~~~~~~~~i~~~-~~~~~~~~~~il~t~~~ 325 (405)
T PRK13869 250 DDYDVVVIDCPPQLGF--LTLSGLCAATSMVITVHPQM-LDIASMSQFLLMTRDLLGVVKEA-GGNLQYDFIRYLLTRYE 325 (405)
T ss_pred ccCCEEEEECCCchhH--HHHHHHHHcCEEEEecCCcH-HHHHHHHHHHHHHHHHHHHHHHh-CCCCCcceeEEEEEeEC
Confidence 3578999999998543 34456677999999886653 33444443332 22222 122 223 47899998
Q ss_pred C
Q psy2646 88 Q 88 (168)
Q Consensus 88 l 88 (168)
.
T Consensus 326 ~ 326 (405)
T PRK13869 326 P 326 (405)
T ss_pred C
Confidence 5
No 450
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=68.66 E-value=34 Score=28.08 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=42.2
Q ss_pred CCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEE--EeccCCCCHHHHHHHHHHHHHH
Q psy2646 74 CDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLE--TSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 74 ~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~--vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
..++|++|.+||.-...+.+ ...+.+++..+++++.. +=++-+.|-.++-+.++..+.+
T Consensus 367 kfgvp~VVAIN~F~tDt~~E--i~~i~~~~~~~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 367 KFGVPVVVAINKFPTDTEAE--IAAIEKLCEEHGVEVALSEVWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred HcCCCeEEEeccCCCCCHHH--HHHHHHHHHHcCCceeehhhhhccCccHHHHHHHHHHHHhC
Confidence 44899999999986443322 34566788888876543 3467778888888888877665
No 451
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=68.37 E-value=31 Score=29.03 Aligned_cols=58 Identities=9% Similarity=-0.029 Sum_probs=40.2
Q ss_pred CCCCcEEEEEecCCCCCCcccCHHHHHHHHHh-cCCCEEEEe--ccCCCCHHHHHHHHHHHHH
Q psy2646 74 CDNVNKLLVGNKNDQTSKKAVDYQVAKEYADH-LKIPFLETS--AKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 74 ~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~vS--a~~~~~i~~i~~~l~~~~~ 133 (168)
..++|++|.+|+..-..+.+ .+.+.+++.. .++++..+. ++-|.|-.++-+.+++.+.
T Consensus 391 ~fg~pvVVaiN~F~~Dt~~E--i~~~~~~~~~~~~~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 451 (578)
T PRK13506 391 QYGLPVVVAINRFPTDTDEE--LEWLKEAVLLTGAFGCEISEAFAQGGEGATALAQAVVRACE 451 (578)
T ss_pred HcCCCeEEEecCCCCCCHHH--HHHHHHHHHHcCCCcEEEechhhccchhHHHHHHHHHHHhh
Confidence 34899999999997544333 2456677777 566665554 5556678888888886665
No 452
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=68.14 E-value=30 Score=27.43 Aligned_cols=69 Identities=12% Similarity=0.026 Sum_probs=39.7
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh--hhHHHHHHH----HHHHHHhc-CCCC-cEEEEEecCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ--ETFNNLKQW----LEEIDRYA-CDNV-NKLLVGNKNDQ 88 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~----~~~i~~~~-~~~~-piivv~nK~Dl 88 (168)
..+.+.|+|+|+... ......+..+|.+|+.+.++.. .+...+... +..+.... ..+. .+.++.|+.|.
T Consensus 233 ~~yD~IiiD~pp~~~--~~~~~al~aad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 309 (387)
T TIGR03453 233 DDYDVVVIDCPPQLG--FLTLSALCAATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEP 309 (387)
T ss_pred hcCCEEEEeCCccHh--HHHHHHHHHcCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECC
Confidence 357899999998753 3344567789999998876532 232222222 22232221 1122 24578899885
No 453
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=67.70 E-value=7.5 Score=27.14 Aligned_cols=68 Identities=25% Similarity=0.260 Sum_probs=37.4
Q ss_pred EEEEEEEeCCCchhhccc---chhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCC
Q psy2646 19 RTLIVIWDTAGQERFRTI---TSSY--YRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSK 91 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~---~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 91 (168)
.....|.++.|......+ ...+ .-..+.+|.|+|+.+..........+.... ..-=+++.||.|+.+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi-----~~ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQI-----AFADVIVLNKIDLVSD 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH-----CT-SEEEEE-GGGHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcc-----hhcCEEEEeccccCCh
Confidence 345677788886544433 1111 234689999999977533333333222222 2234899999998654
No 454
>PLN02759 Formate--tetrahydrofolate ligase
Probab=67.58 E-value=26 Score=29.68 Aligned_cols=58 Identities=10% Similarity=0.021 Sum_probs=40.9
Q ss_pred CCCCcEEEEEecCCCCCCcccCHHHHHHHHHhcC-CCEEEEe--ccCCCCHHHHHHHHHHHHH
Q psy2646 74 CDNVNKLLVGNKNDQTSKKAVDYQVAKEYADHLK-IPFLETS--AKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 74 ~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vS--a~~~~~i~~i~~~l~~~~~ 133 (168)
..+.|+||.+|+..-....+ .+.+.+++...+ +.++.+. ++-|.|-.++-+.+++.+.
T Consensus 448 ~fg~pvVVaiN~F~~Dt~~E--i~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 508 (637)
T PLN02759 448 SYGVNVVVAINMFATDTEAE--LEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACE 508 (637)
T ss_pred HcCCCeEEEecCCCCCCHHH--HHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHHh
Confidence 34899999999997544333 355667888888 4665554 4555678888888886655
No 455
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=64.84 E-value=51 Score=25.83 Aligned_cols=98 Identities=14% Similarity=0.245 Sum_probs=52.2
Q ss_pred EEEEEEeCCCchhhcccchhh----h---cCCcEEEEEEeCCChhh--H-------H-------------HHHHH-HHHH
Q psy2646 20 TLIVIWDTAGQERFRTITSSY----Y---RGAHGIIVVYDCTDQET--F-------N-------------NLKQW-LEEI 69 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~~~~~~~----~---~~~d~~i~v~d~~~~~s--~-------~-------------~~~~~-~~~i 69 (168)
....+.++.|......+...+ + -..|++|.++|+.+... + . .+..+ ..++
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 466789999976544443332 1 14688999999975311 0 0 01111 2222
Q ss_pred HHhcCCCCcEEEEEecCCCCCCcccCHHHHHHHHHh-cC--CCEEEEeccCCCCHHHHHH
Q psy2646 70 DRYACDNVNKLLVGNKNDQTSKKAVDYQVAKEYADH-LK--IPFLETSAKNGANVEQAFL 126 (168)
Q Consensus 70 ~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~~-~~--~~~~~vSa~~~~~i~~i~~ 126 (168)
...=+|++||+|+.+...+ +...+..+. .+ .++++++ ........+|.
T Consensus 173 ------~~AD~IvlnK~Dl~~~~~l--~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 173 ------ACADLVILNKADLLDAAGL--ARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred ------HhCCEEEEeccccCCHHHH--HHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 1234899999998765433 233333333 22 3455544 33345666655
No 456
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=64.14 E-value=36 Score=21.93 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=29.1
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 42 RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 42 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
..++...+++|.+ .+..+....++..+... ..++|++++.++.
T Consensus 35 ~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~-~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 35 SFTDIAAVVISWD-GEEEDEAQELLDKIRER-NFGIPVFLLAERD 77 (115)
T ss_dssp CTTTEEEEEEECH-HHHHHHHHHHHHHHHHH-STT-EEEEEESCC
T ss_pred hCCCeeEEEEEcc-cccchhHHHHHHHHHHh-CCCCCEEEEecCC
Confidence 3577777777766 55555666777777555 5789999999854
No 457
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=63.90 E-value=59 Score=24.33 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=32.0
Q ss_pred EEEEEEEeCCCchhhccc-chhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHH
Q psy2646 19 RTLIVIWDTAGQERFRTI-TSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDR 71 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 71 (168)
.+.+.|.|++|..-...+ ....+.-||.+|+++..+ +.++..+..++..+..
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~-~~si~~~~~ll~~i~~ 168 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCD-PMAIYAANNICKGIKR 168 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccch-HHHHHHHHHHHHHHHH
Confidence 578999999875322221 122234589999888775 4566666655555533
No 458
>PRK10037 cell division protein; Provisional
Probab=61.14 E-value=39 Score=24.90 Aligned_cols=35 Identities=9% Similarity=0.103 Sum_probs=27.8
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCT 54 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 54 (168)
+.+.+.|.|+|+... ......+..+|.+|+++.++
T Consensus 116 ~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~ 150 (250)
T PRK10037 116 GRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVD 150 (250)
T ss_pred CCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcC
Confidence 468899999998743 34566788899999999775
No 459
>KOG1487|consensus
Probab=59.52 E-value=6.1 Score=29.95 Aligned_cols=52 Identities=23% Similarity=0.089 Sum_probs=36.5
Q ss_pred CCcEEEEEecCCCCCCcccCHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 76 NVNKLLVGNKNDQTSKKAVDYQVAKEYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 76 ~~piivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
-+|.+.+.||+|-.. .++.. +. ......+++||.++.|++++++.+...+.-
T Consensus 231 yVp~iyvLNkIdsIS-----iEELd-ii-~~iphavpISA~~~wn~d~lL~~mweyL~L 282 (358)
T KOG1487|consen 231 YVPCIYVLNKIDSIS-----IEELD-II-YTIPHAVPISAHTGWNFDKLLEKMWEYLKL 282 (358)
T ss_pred eeeeeeeecccceee-----eeccc-ee-eeccceeecccccccchHHHHHHHhhcchh
Confidence 478999999999532 12211 11 112357899999999999999998877664
No 460
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=58.57 E-value=79 Score=26.92 Aligned_cols=58 Identities=19% Similarity=0.088 Sum_probs=39.6
Q ss_pred CCCCcEEEEEecCCCCCCcccCHHHHHHHHH-hcC-CCEEEEe--ccCCCCHHHHHHHHHHHHH
Q psy2646 74 CDNVNKLLVGNKNDQTSKKAVDYQVAKEYAD-HLK-IPFLETS--AKNGANVEQAFLTMATEIK 133 (168)
Q Consensus 74 ~~~~piivv~nK~Dl~~~~~v~~~~~~~~~~-~~~-~~~~~vS--a~~~~~i~~i~~~l~~~~~ 133 (168)
..++|+||.+|+..-....+ .+.+.+++. ..+ +++..+. +.-|.|-.++-+.+++.+.
T Consensus 435 ~fgvpvVVAIN~F~tDT~~E--i~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~~ 496 (625)
T PTZ00386 435 KFGVPVVVALNKFSTDTDAE--LELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIRVTE 496 (625)
T ss_pred HcCCCeEEEecCCCCCCHHH--HHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHHHHh
Confidence 34899999999987544333 345667777 777 4665544 4556678888888876654
No 461
>KOG0052|consensus
Probab=58.18 E-value=35 Score=27.31 Aligned_cols=76 Identities=16% Similarity=0.112 Sum_probs=44.3
Q ss_pred eeCCeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCCh-----hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 14 KEERTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQ-----ETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 14 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-----~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
.+....+.+.+.|.+|+..+....-.-...+|..++.+.+.-. .++....+-...+ .....-.+.++.+||+|.
T Consensus 76 ~~~t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehall-a~tlgv~qliv~v~k~D~ 154 (391)
T KOG0052|consen 76 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL-AFTLGVKQLIVGVNKMDS 154 (391)
T ss_pred cccceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhh-hccccceeeeEEeecccc
Confidence 3346678899999999987765444446778866666655211 1222221111111 111224678999999996
Q ss_pred CC
Q psy2646 89 TS 90 (168)
Q Consensus 89 ~~ 90 (168)
..
T Consensus 155 ~~ 156 (391)
T KOG0052|consen 155 TE 156 (391)
T ss_pred cC
Confidence 53
No 462
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=57.71 E-value=13 Score=24.07 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=15.8
Q ss_pred EEecCCCCCCcccCHHHHHHHHHhc-CCCEEEEecc
Q psy2646 82 VGNKNDQTSKKAVDYQVAKEYADHL-KIPFLETSAK 116 (168)
Q Consensus 82 v~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~vSa~ 116 (168)
++||+|++.. .+-...+.+.+ +..++++||.
T Consensus 1 AaNK~D~~~a----~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPAA----DENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-----HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCcccccccc----HhHHHHHHHhCCCCceeeccHH
Confidence 5899997542 23344444444 3678888875
No 463
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=56.36 E-value=40 Score=19.87 Aligned_cols=70 Identities=14% Similarity=-0.062 Sum_probs=37.8
Q ss_pred eeeeeeCCeEEEEEEEeCCCchhhccc-chhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEe
Q psy2646 10 LQNKKEERTRTLIVIWDTAGQERFRTI-TSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKLLVGN 84 (168)
Q Consensus 10 ~~~~~~~~~~~~l~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~n 84 (168)
.+...++ .+.++|+++....... .......+|.++++++.+.. +............... ....++.++.|
T Consensus 28 ~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 28 KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL-AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh-hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 4444555 6889999987532211 13566788999999877753 3333333322222211 23445555544
No 464
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=55.59 E-value=82 Score=23.29 Aligned_cols=66 Identities=12% Similarity=0.084 Sum_probs=38.4
Q ss_pred EEEEEEEeCCCchhhccc-chhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 19 RTLIVIWDTAGQERFRTI-TSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
++.+.|.|++|.-....+ .......+|.+|+++..+ +.++..+..++..+.... ... ..++.|..+
T Consensus 113 ~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~-~~si~~~~~~~~~i~~~~-~~~-~~vv~~~~~ 179 (264)
T PRK13231 113 DIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGE-YMSLYAANNIARGIKKLK-GKL-GGIICNCRG 179 (264)
T ss_pred CCCEEEEecCCCceEccccccccccccceeEEEecCc-hhHHHHHHHHHHHHHHcC-Ccc-eEEEEcCCC
Confidence 468899999875321111 111235789999988664 456777777666665442 111 235555544
No 465
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=55.06 E-value=53 Score=24.38 Aligned_cols=68 Identities=12% Similarity=0.173 Sum_probs=41.5
Q ss_pred eEEEEEEEeCCCchhhc---ccc------hhhhcC--CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEec
Q psy2646 18 TRTLIVIWDTAGQERFR---TIT------SSYYRG--AHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLVGNK 85 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~---~~~------~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK 85 (168)
..+.+.++|||+.-..- .+. ...+.+ .+++++|...+ .-+..++...+..+... +.|+ -+|.|+
T Consensus 123 ~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~-~~~~~e~~r~~~~L~~~---g~~v~gvV~N~ 198 (254)
T cd00550 123 AEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPE-KMSLYETERAIQELAKY---GIDVDAVIVNQ 198 (254)
T ss_pred CCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCC-hhHHHHHHHHHHHHHHC---CCCCCEEEEec
Confidence 36789999999742211 111 112222 45777777665 45677777777777655 3443 789999
Q ss_pred CCCC
Q psy2646 86 NDQT 89 (168)
Q Consensus 86 ~Dl~ 89 (168)
....
T Consensus 199 v~~~ 202 (254)
T cd00550 199 LLPE 202 (254)
T ss_pred Cccc
Confidence 8653
No 466
>TIGR03488 cas_Cas5p CRISPR-associated protein, Cas5p family. CC Members of this protein family are cas, or CRISPR-associated, proteins. The two sequences in the alignment seed are found within cas gene clusters that are adjacent to CRISPR DNA repeats in two members of the order Bacteroidales, Porphyromonas gingivalis W83 and Bacteroides forsythus ATCC 43037. This cas protein family is unique to the Pgingi (Porphyromonas gingivalis) subtype, but shows some sequence similarity to genes of the Cas5 type (see TIGR02593).
Probab=54.91 E-value=2.3 Score=29.69 Aligned_cols=89 Identities=11% Similarity=0.050 Sum_probs=51.2
Q ss_pred ccccceeeeeeC---CeEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEE
Q psy2646 5 LPYQTLQNKKEE---RTRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLL 81 (168)
Q Consensus 5 ~~t~~~~~~~~~---~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiv 81 (168)
.+|+++..+.+= .+-....+.|+...-.|+.+|..+++.+|+-.+-+..+.-..+..+. +.--++
T Consensus 85 ~~t~~s~fipll~dffdl~~~~~i~~~~~~ffndlwkr~frr~dag~ih~~gtenidy~~i~------------dk~k~m 152 (237)
T TIGR03488 85 PNTIGSIFIPLLMDFFDLDDQPIIDFDEPCFFNDLWKRAFRRADAGKIHFGGTENIDYRLIM------------DKFKFM 152 (237)
T ss_pred CCcccceehHHHHHHhhcccccccccCCcchHhHHHHHHHhhccCceecCCCcccceeeehh------------hhhhhh
Confidence 456666555441 12223456677666678999999999999866655544321111111 111245
Q ss_pred EEecCCCCCCcccCHHHHHHHHHh
Q psy2646 82 VGNKNDQTSKKAVDYQVAKEYADH 105 (168)
Q Consensus 82 v~nK~Dl~~~~~v~~~~~~~~~~~ 105 (168)
+-|+.|..++..+....++.|.++
T Consensus 153 cener~~e~~dk~d~~~le~f~ke 176 (237)
T TIGR03488 153 CENERDEENEDKIDNHALEKFFKE 176 (237)
T ss_pred cccccchhhhhhhhhHHHHHHHHh
Confidence 578888876655555555555544
No 467
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=54.66 E-value=88 Score=23.34 Aligned_cols=68 Identities=18% Similarity=0.104 Sum_probs=39.7
Q ss_pred eEEEEEEEeCCCchhhccc-chhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcE-EEEEecC
Q psy2646 18 TRTLIVIWDTAGQERFRTI-TSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNK-LLVGNKN 86 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pi-ivv~nK~ 86 (168)
+.+.+.|.|++|.--...+ ....+.-+|.+|+++..+ +.++..+..++..+.... ..+..+ .++.|+.
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e-~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~ 186 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGE-MMAMYAANNICKGILKYADAGGVRLGGLICNSR 186 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecCc-hhHHHHHHHHHHHHHHHhhcCCCceeEEEEecC
Confidence 4578999999765321111 111223688888888554 556777766666554332 234554 3667864
No 468
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=52.94 E-value=67 Score=22.87 Aligned_cols=47 Identities=23% Similarity=0.213 Sum_probs=28.2
Q ss_pred EEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH
Q psy2646 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI 69 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 69 (168)
.+.|+|+|+.... ......+..+|.+|+++..+.. +...+...+..+
T Consensus 150 D~IiiD~pp~~~~-~~~~~l~~~aD~viiV~~~~~~-~~~~~~~~~~~l 196 (207)
T TIGR03018 150 RIIIIDTPPLLVF-SEARALARLVGQIVLVVEEGRT-TQEAVKEALSAL 196 (207)
T ss_pred CEEEEECCCCcch-hHHHHHHHhCCEEEEEEECCCC-CHHHHHHHHHHh
Confidence 5788888865432 1223345668888888877643 344555555554
No 469
>PRK11519 tyrosine kinase; Provisional
Probab=52.67 E-value=44 Score=29.05 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=40.6
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLVGNKNDQ 88 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~Dl 88 (168)
..+.+.|+|||+.-.... .......+|++|+|+..... +...+...+..+... +.++ -+|.|+.+.
T Consensus 634 ~~yD~ViiDtpP~~~v~D-a~~l~~~~d~~l~Vvr~~~t-~~~~~~~~~~~l~~~---~~~~~G~VlN~v~~ 700 (719)
T PRK11519 634 KNYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVN-TLKEVETSLSRFEQN---GIPVKGVILNSIFR 700 (719)
T ss_pred hcCCEEEEeCCCcccchH-HHHHHHHCCeEEEEEeCCCC-CHHHHHHHHHHHHhC---CCCeEEEEEeCCcc
Confidence 457799999998643211 12345779999999877632 233444444444333 4554 488999864
No 470
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=52.28 E-value=52 Score=24.51 Aligned_cols=47 Identities=15% Similarity=0.105 Sum_probs=33.6
Q ss_pred hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 40 YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 40 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
....+|.++.+|+.-+...-..+...++.+.++..++.|+.++-|-.
T Consensus 151 aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrnag 197 (249)
T COG1010 151 AAAEADFVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRNAG 197 (249)
T ss_pred HHhhCCEEEEEECCccccchHHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 45679999999988765544445555566666666789998887755
No 471
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=51.95 E-value=42 Score=23.10 Aligned_cols=43 Identities=7% Similarity=0.122 Sum_probs=28.2
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 41 YRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 41 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
...+|.+|+.+ |.+-..+..++..+.....++.+++|||-|..
T Consensus 67 ~~~~D~vvly~----PKaK~e~~~lL~~l~~~L~~g~~i~vVGEnk~ 109 (155)
T PF08468_consen 67 DQDFDTVVLYW----PKAKAEAQYLLANLLSHLPPGTEIFVVGENKG 109 (155)
T ss_dssp HTT-SEEEEE------SSHHHHHHHHHHHHTTS-TT-EEEEEEEGGG
T ss_pred ccCCCEEEEEc----cCcHHHHHHHHHHHHHhCCCCCEEEEEecCcc
Confidence 35689999988 34456667777777666567899999998764
No 472
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=51.22 E-value=1.2e+02 Score=23.75 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=39.0
Q ss_pred eEEEEEEEeCCCch-------hhccc------c--hhh-hcCCcEEEEEEeCCChh----hHHHHHHHHHHHHHhcCCCC
Q psy2646 18 TRTLIVIWDTAGQE-------RFRTI------T--SSY-YRGAHGIIVVYDCTDQE----TFNNLKQWLEEIDRYACDNV 77 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~-------~~~~~------~--~~~-~~~~d~~i~v~d~~~~~----s~~~~~~~~~~i~~~~~~~~ 77 (168)
..+-+.+||+...+ +|... | ... -.++|.+-+.+...+++ +-++.......+... .+.
T Consensus 48 p~ia~~v~D~~~~~~~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~ea--vd~ 125 (319)
T PRK04452 48 PVIAMEVFDMPPEDWPEAVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQA--VDV 125 (319)
T ss_pred CeEEEEEecCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHh--CCC
Confidence 34668899997643 22222 1 111 34689988888666664 334444455555443 379
Q ss_pred cEEEEEec
Q psy2646 78 NKLLVGNK 85 (168)
Q Consensus 78 piivv~nK 85 (168)
|++|.++.
T Consensus 126 PL~Id~s~ 133 (319)
T PRK04452 126 PLIIGGSG 133 (319)
T ss_pred CEEEecCC
Confidence 99887764
No 473
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=50.91 E-value=16 Score=27.31 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.0
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 108 IPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 108 ~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+|++..||.++.|++.+++.+...+
T Consensus 241 ~pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 241 VPVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred EEEEEeeCCCCcCHHHHHHHHHHhC
Confidence 5899999999999999999887653
No 474
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.00 E-value=35 Score=31.48 Aligned_cols=70 Identities=26% Similarity=0.226 Sum_probs=42.6
Q ss_pred EEEEEeCCCchhh--------cccchhh---------hcCCcEEEEEEeCCChhh---H---HHHHHH---HHHHHHhcC
Q psy2646 21 LIVIWDTAGQERF--------RTITSSY---------YRGAHGIIVVYDCTDQET---F---NNLKQW---LEEIDRYAC 74 (168)
Q Consensus 21 ~l~l~Dt~G~~~~--------~~~~~~~---------~~~~d~~i~v~d~~~~~s---~---~~~~~~---~~~i~~~~~ 74 (168)
.-.++||+|...- ...|..+ .+..+|+|+.+|+++.-+ - ..+..+ +.++.....
T Consensus 175 eaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~ 254 (1188)
T COG3523 175 EAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH 254 (1188)
T ss_pred ceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4578999985321 1234333 346899999999876411 1 112222 333333334
Q ss_pred CCCcEEEEEecCCCCC
Q psy2646 75 DNVNKLLVGNKNDQTS 90 (168)
Q Consensus 75 ~~~piivv~nK~Dl~~ 90 (168)
...|+.|++||.|+..
T Consensus 255 ~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 255 ARLPVYLVLTKADLLP 270 (1188)
T ss_pred cCCceEEEEecccccc
Confidence 5799999999999854
No 475
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=47.13 E-value=27 Score=27.75 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=26.7
Q ss_pred EEEEEEEeCCCchh----hcccchhh---hcCCcEEEEEEeCCC
Q psy2646 19 RTLIVIWDTAGQER----FRTITSSY---YRGAHGIIVVYDCTD 55 (168)
Q Consensus 19 ~~~l~l~Dt~G~~~----~~~~~~~~---~~~~d~~i~v~d~~~ 55 (168)
...+.|.|++|.=. -..+...| ++.+|+++.|+|...
T Consensus 66 ~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 66 PAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 35789999998532 23344444 678999999998873
No 476
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=46.60 E-value=85 Score=22.12 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 56 QETFNNLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 56 ~~s~~~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
++.-.++..|+..+... +..++|+-|.
T Consensus 45 ~~~tpe~~~W~~e~k~~---gi~v~vvSNn 71 (175)
T COG2179 45 PDATPELRAWLAELKEA---GIKVVVVSNN 71 (175)
T ss_pred CCCCHHHHHHHHHHHhc---CCEEEEEeCC
Confidence 34456778888888655 5677777774
No 477
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=45.39 E-value=55 Score=23.84 Aligned_cols=40 Identities=13% Similarity=-0.031 Sum_probs=25.6
Q ss_pred eEEEEEEEeCCCchhhcc------cchhhhcC--CcEEEEEEeCCChh
Q psy2646 18 TRTLIVIWDTAGQERFRT------ITSSYYRG--AHGIIVVYDCTDQE 57 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~------~~~~~~~~--~d~~i~v~d~~~~~ 57 (168)
.+..+.++||+|...... ..-..+.. ++.+|+..+.....
T Consensus 58 ~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 58 KEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETILG 105 (224)
T ss_pred CcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcccH
Confidence 357899999999754321 11222333 88888888777543
No 478
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=44.63 E-value=69 Score=25.54 Aligned_cols=35 Identities=23% Similarity=0.085 Sum_probs=24.9
Q ss_pred EEEEEEeCCCchhhc----ccc---hhhhcCCcEEEEEEeCC
Q psy2646 20 TLIVIWDTAGQERFR----TIT---SSYYRGAHGIIVVYDCT 54 (168)
Q Consensus 20 ~~l~l~Dt~G~~~~~----~~~---~~~~~~~d~~i~v~d~~ 54 (168)
..+.+.|+||.-.-. .+. -..++.+|++++|++..
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 368999999975421 122 23478899999999984
No 479
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=42.78 E-value=67 Score=21.26 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=42.2
Q ss_pred CcEEEEEecCCCCC----C-cc-cCHHHHHHHHHhcC-----CCEEEEeccCCCCHHHHHHHHHHHHHHHhccC
Q psy2646 77 VNKLLVGNKNDQTS----K-KA-VDYQVAKEYADHLK-----IPFLETSAKNGANVEQAFLTMATEIKKRVTKD 139 (168)
Q Consensus 77 ~piivv~nK~Dl~~----~-~~-v~~~~~~~~~~~~~-----~~~~~vSa~~~~~i~~i~~~l~~~~~~~~~~~ 139 (168)
--++|+|.|.+-.. . +. -..+.+.++..+++ +.++.+||.+++.+.+.++.....+.+--+.+
T Consensus 55 DGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lGpnp 128 (132)
T COG1908 55 DGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELGPNP 128 (132)
T ss_pred CeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45788888887431 1 00 01122334455555 57999999999999999999998888765443
No 480
>KOG0781|consensus
Probab=42.65 E-value=65 Score=26.82 Aligned_cols=93 Identities=15% Similarity=0.161 Sum_probs=54.2
Q ss_pred CeEEEEEEEeCCCchhhcc-cch---h--hhcCCcEEEEEEeC-CChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCC
Q psy2646 17 RTRTLIVIWDTAGQERFRT-ITS---S--YYRGAHGIIVVYDC-TDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQT 89 (168)
Q Consensus 17 ~~~~~l~l~Dt~G~~~~~~-~~~---~--~~~~~d~~i~v~d~-~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 89 (168)
..++.+.+.||+|...-.. +.. . -+...|.+++|-.+ ...++.+.+.++-..+.....+..---++.+|+|-.
T Consensus 464 ~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv 543 (587)
T KOG0781|consen 464 NQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTV 543 (587)
T ss_pred hcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccch
Confidence 3457899999999753221 111 1 23467888888643 234677777777666655543333336789999964
Q ss_pred CCcccCHHHHHH--HHHhcCCCEEEEe
Q psy2646 90 SKKAVDYQVAKE--YADHLKIPFLETS 114 (168)
Q Consensus 90 ~~~~v~~~~~~~--~~~~~~~~~~~vS 114 (168)
.. ..+.. +.--.+.|++++-
T Consensus 544 ~d-----~vg~~~~m~y~~~~pi~fvg 565 (587)
T KOG0781|consen 544 DD-----KVGAAVSMVYITGKPILFVG 565 (587)
T ss_pred hh-----HHHHHhhheeecCCceEEEe
Confidence 32 22222 2222356777764
No 481
>KOG0446|consensus
Probab=41.34 E-value=4.8 Score=34.44 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=44.7
Q ss_pred EEEEEEeCCCchh-------------hcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecC
Q psy2646 20 TLIVIWDTAGQER-------------FRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKN 86 (168)
Q Consensus 20 ~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 86 (168)
..+.+.|.||... ...+...|+.....+|+.+...+.+ -....++....+....+...+.|.+|.
T Consensus 132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d--~ats~alkiarevDp~g~RTigvitK~ 209 (657)
T KOG0446|consen 132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD--IATSPALVVAREVDPGGSRTLEVITKF 209 (657)
T ss_pred chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh--hhcCHHHHHHHhhCCCccchhHHhhhH
Confidence 4578899998532 3456677888889999988776621 222334555555544466777888888
Q ss_pred CCC
Q psy2646 87 DQT 89 (168)
Q Consensus 87 Dl~ 89 (168)
|+.
T Consensus 210 Dlm 212 (657)
T KOG0446|consen 210 DFM 212 (657)
T ss_pred Hhh
Confidence 864
No 482
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=41.26 E-value=40 Score=23.30 Aligned_cols=47 Identities=15% Similarity=0.034 Sum_probs=26.6
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEec
Q psy2646 39 SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 39 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 85 (168)
.-+..||++|++...=+..--..++.|+..+......++|++++++-
T Consensus 64 ~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 64 QAIESADLLVVGSPVYRGSYTGLFKHLFDLVDPNALIGKPVLLAATG 110 (174)
T ss_pred HHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCHhHhCCCEEEEEEec
Confidence 34678999999975544321122333444332212347888888774
No 483
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=41.05 E-value=23 Score=26.67 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=22.1
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 108 IPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 108 ~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+|++..||.++.|+..+++.+.+.+
T Consensus 240 ~Pv~~gsa~~~~Gv~~Lld~i~~~~ 264 (267)
T cd04169 240 TPVFFGSALNNFGVQELLDALVDLA 264 (267)
T ss_pred EEEEecccccCcCHHHHHHHHHHHC
Confidence 5889999999999999999988754
No 484
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=40.61 E-value=1.6e+02 Score=22.23 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=37.8
Q ss_pred EEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEecCC
Q psy2646 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNK-LLVGNKND 87 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~D 87 (168)
.+.|.|+|+.-.... -.++..+|.+|+|...+ +.+..++...+..+.... ..... ++|.|+.+
T Consensus 114 D~iliD~~aGl~~~~--~~~~~~sd~~viVt~pe-~~si~~A~~~i~~~~~~~-~~~~~~~vV~N~v~ 177 (262)
T COG0455 114 DYILIDTGAGLSRDT--LSFILSSDELVIVTTPE-PTSITDAYKTIKILSKLG-LDLLGRRVVLNRVR 177 (262)
T ss_pred CEEEEeCCCCccHHH--HHHHHhcCcEEEEeCCC-cchHHHHHHHHHHHHHcC-CccccceEEEEecc
Confidence 688999996543232 23455568888887655 345555555555554432 11112 48999997
No 485
>KOG2743|consensus
Probab=40.55 E-value=21 Score=27.76 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=41.8
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcC--------CcEEEEEEeCCChhh-HHHH---HHHHHHHHHhcCCCCcEEEEEec
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRG--------AHGIIVVYDCTDQET-FNNL---KQWLEEIDRYACDNVNKLLVGNK 85 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~--------~d~~i~v~d~~~~~s-~~~~---~~~~~~i~~~~~~~~piivv~nK 85 (168)
+++...+.+|.|...-.++...|+.. -||+|-++|+.+..- +++. ..|-+...+. ...=.++.||
T Consensus 144 GkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Qi---A~AD~II~NK 220 (391)
T KOG2743|consen 144 GKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQI---ALADRIIMNK 220 (391)
T ss_pred CCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHH---hhhheeeecc
Confidence 34567889999987655555554432 589999999875311 1110 1111111121 1223677999
Q ss_pred CCCCCCcc
Q psy2646 86 NDQTSKKA 93 (168)
Q Consensus 86 ~Dl~~~~~ 93 (168)
.|+.++..
T Consensus 221 tDli~~e~ 228 (391)
T KOG2743|consen 221 TDLVSEEE 228 (391)
T ss_pred ccccCHHH
Confidence 99976533
No 486
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=39.19 E-value=90 Score=19.00 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=27.7
Q ss_pred EEEEEeCCCc-hhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEec
Q psy2646 21 LIVIWDTAGQ-ERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKL-LVGNK 85 (168)
Q Consensus 21 ~l~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK 85 (168)
.+.+.|+|.- -+-....-.++. .++.|+|-.... -+..++.+-...+.+. +.|++ +|-|.
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~~-~~g~ivVTTPq~-la~~dv~r~~~~~~~~---~vpilGvVENM 63 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYLP-IDGAIVVTTPQE-LALADVRRAIDMFRKL---NVPILGVVENM 63 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH---SEEEEEE-CCC---HHHHHHHHHHHHCT---T-EEEEEEECT
T ss_pred CEEEEeCCCCCCcHHHHHHHhCC-CCeEEEEeCCHH-HHHHHHHHHHHHHHhc---CCCcEEEEECC
Confidence 3568899843 221111223333 677777765554 3566666655555444 68887 44443
No 487
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=39.08 E-value=26 Score=26.43 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.9
Q ss_pred CCEEEEeccCCCCHHHHHHHHHHHH
Q psy2646 108 IPFLETSAKNGANVEQAFLTMATEI 132 (168)
Q Consensus 108 ~~~~~vSa~~~~~i~~i~~~l~~~~ 132 (168)
+|++..||.++.|+..+++.+...+
T Consensus 243 ~PV~~gSa~~~~Gi~~lld~i~~~~ 267 (270)
T cd01886 243 VPVLCGSAFKNKGVQPLLDAVVDYL 267 (270)
T ss_pred EEEEeCcCCCCcCHHHHHHHHHHhc
Confidence 5888999999999999999988653
No 488
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=38.35 E-value=1.7e+02 Score=21.81 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=37.7
Q ss_pred eEEEEEEEeCCCchhhcccchh-hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEE-EEEecC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSS-YYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA-CDNVNKL-LVGNKN 86 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~pii-vv~nK~ 86 (168)
+.+.+.++|++|.--.+.+... .-..||.+|+++..+ ..++..+..++..+.... ..+.+++ ++.|+.
T Consensus 117 ~~yD~iliD~~~~~~~~al~~~~~~~aad~viIp~~p~-~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~ 187 (275)
T PRK13233 117 DDLDFVFFDVLGDVVCGGFAMPIRDGKAQEVYIVASGE-MMAIYAANNICKGLVKYAEQSGVRLGGIICNSR 187 (275)
T ss_pred CCCCEEEEecCCceeeccccccchhccCceEEEecccc-HHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCC
Confidence 3478899999764211111000 002688888888765 456666666655542221 3355544 778864
No 489
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=38.21 E-value=85 Score=19.99 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=25.4
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEec
Q psy2646 43 GAHGIIVVYDCTDQETFNNLKQWLEEIDRYACD-NVNKLLVGNK 85 (168)
Q Consensus 43 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~piivv~nK 85 (168)
++|.+.+.+ +....+..+..+...+.+. .+ +.++++.|.-
T Consensus 50 ~pdvV~iS~--~~~~~~~~~~~~i~~l~~~-~~~~~~i~vGG~~ 90 (119)
T cd02067 50 DADAIGLSG--LLTTHMTLMKEVIEELKEA-GLDDIPVLVGGAI 90 (119)
T ss_pred CCCEEEEec--cccccHHHHHHHHHHHHHc-CCCCCeEEEECCC
Confidence 456555544 4445677888888888665 34 5666666654
No 490
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=38.11 E-value=1.1e+02 Score=26.61 Aligned_cols=66 Identities=17% Similarity=0.052 Sum_probs=40.8
Q ss_pred eEEEEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEecCCC
Q psy2646 18 TRTLIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVN-KLLVGNKNDQ 88 (168)
Q Consensus 18 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl 88 (168)
..+.+.|+|||+.-..... ......+|++|+|+..... +...+...+..+... +.+ +-+|.|+++.
T Consensus 639 ~~yD~IIIDtPP~~~~~Da-~~la~~ad~~llVvr~~~t-~~~~~~~~~~~l~~~---~~~~~G~VlN~~~~ 705 (726)
T PRK09841 639 DHYDLVIVDTPPMLAVSDA-AVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQA---GVNIKGAILNGVIK 705 (726)
T ss_pred hcCCEEEEeCCCccccchH-HHHHHhCCeEEEEEeCCCC-CHHHHHHHHHHHHhC---CCceEEEEEeCccc
Confidence 3478999999976433211 2345678999999866532 334455555555332 333 4688999884
No 491
>KOG2052|consensus
Probab=37.40 E-value=76 Score=26.13 Aligned_cols=49 Identities=16% Similarity=0.381 Sum_probs=40.8
Q ss_pred EEEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH
Q psy2646 21 LIVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEI 69 (168)
Q Consensus 21 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 69 (168)
++++..+-|.=+|...|+..+++-++.|=+|...+..|+-.-.++++.+
T Consensus 212 qI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrEtEIYqTv 260 (513)
T KOG2052|consen 212 QIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRETEIYQTV 260 (513)
T ss_pred eeEEEEEecCccccceeeccccCCceEEEEecccchhhhhhHHHHHHHH
Confidence 6888999999999999999999999999999998887755555555544
No 492
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=37.09 E-value=64 Score=20.68 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=21.7
Q ss_pred EEEEeCCCchhhcccchhhhcCCcEEEEEEeCCChhhHHHH
Q psy2646 22 IVIWDTAGQERFRTITSSYYRGAHGIIVVYDCTDQETFNNL 62 (168)
Q Consensus 22 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 62 (168)
+.+||.-|+..-..-....-..+-+++++.+ .++..-..+
T Consensus 38 lTv~Da~GqW~~~~~g~~~rE~Skvv~i~~~-~~~~~~~~i 77 (104)
T PF12098_consen 38 LTVLDAYGQWRDRATGRLIRERSKVVIIVHP-DTPAAEARI 77 (104)
T ss_pred ceEEeccceEecCCCCcEeecccEEEEEEeC-CChHHHHHH
Confidence 7899999997643333333334555555554 334333333
No 493
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=36.86 E-value=1e+02 Score=20.34 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=23.9
Q ss_pred hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEe
Q psy2646 39 SYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGN 84 (168)
Q Consensus 39 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~n 84 (168)
..++.+|++|.+ ..-.-+++++...+...+-....++|++++..
T Consensus 49 ~m~~~sda~I~l--PGG~GTl~El~~~~~~~~l~~~~~~Piil~~~ 92 (133)
T PF03641_consen 49 IMIESSDAFIAL--PGGIGTLDELFEALTLMQLGRHNKVPIILLNI 92 (133)
T ss_dssp HHHHHESEEEEE--S-SHHHHHHHHHHHHHHHTTSSTS-EEEEEEC
T ss_pred HHHHhCCEEEEE--ecCCchHHHHHHHHHHHhhccccCCCEEEeCC
Confidence 456779999888 33444555555444433222233458777663
No 494
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=36.04 E-value=1.3e+02 Score=19.97 Aligned_cols=98 Identities=9% Similarity=0.046 Sum_probs=52.0
Q ss_pred EEEEeCCCchhhcccchhh-hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCCcccCHHHHH
Q psy2646 22 IVIWDTAGQERFRTITSSY-YRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQTSKKAVDYQVAK 100 (168)
Q Consensus 22 l~l~Dt~G~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~v~~~~~~ 100 (168)
+.+.|+++...-....+.. -.++|++.+ +..+..+.+.+..+...+.+......++++-|+.-+ ++.
T Consensus 31 feVi~lg~~~s~e~~v~aa~e~~adii~i--Ssl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~---------~~~- 98 (132)
T TIGR00640 31 FDVDVGPLFQTPEEIARQAVEADVHVVGV--SSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPP---------QDF- 98 (132)
T ss_pred cEEEECCCCCCHHHHHHHHHHcCCCEEEE--cCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCCh---------HhH-
Confidence 5567776643222222222 234555544 444445566677777777654333456555555431 111
Q ss_pred HHHHhcCCCEEEEeccCCCCHHHHHHHHHHHHHH
Q psy2646 101 EYADHLKIPFLETSAKNGANVEQAFLTMATEIKK 134 (168)
Q Consensus 101 ~~~~~~~~~~~~vSa~~~~~i~~i~~~l~~~~~~ 134 (168)
......|+.-+. ..|.++.+++.++...+..
T Consensus 99 ~~l~~~Gvd~~~---~~gt~~~~i~~~l~~~~~~ 129 (132)
T TIGR00640 99 DELKEMGVAEIF---GPGTPIPESAIFLLKKLRK 129 (132)
T ss_pred HHHHHCCCCEEE---CCCCCHHHHHHHHHHHHHH
Confidence 223446763332 2667899999998876644
No 495
>PRK13660 hypothetical protein; Provisional
Probab=35.92 E-value=1.6e+02 Score=20.93 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=6.7
Q ss_pred hcCCcEEEEEEeCC
Q psy2646 41 YRGAHGIIVVYDCT 54 (168)
Q Consensus 41 ~~~~d~~i~v~d~~ 54 (168)
+..+|++|.+||..
T Consensus 127 v~~sd~~i~~YD~e 140 (182)
T PRK13660 127 LEHTDGALLVYDEE 140 (182)
T ss_pred HHccCeEEEEEcCC
Confidence 33455555555544
No 496
>PRK06756 flavodoxin; Provisional
Probab=35.63 E-value=77 Score=21.12 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=27.9
Q ss_pred hhcCCcEEEEEEeCCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEe
Q psy2646 40 YYRGAHGIIVVYDCTDQETFN-NLKQWLEEIDRYACDNVNKLLVGN 84 (168)
Q Consensus 40 ~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~piivv~n 84 (168)
.+.+.|++++....-....+. .+..++..+......+.|+.++++
T Consensus 46 ~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt 91 (148)
T PRK06756 46 ILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGS 91 (148)
T ss_pred HHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeC
Confidence 466789998888553312222 355566665433345788999988
No 497
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=35.26 E-value=1.3e+02 Score=22.46 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=22.5
Q ss_pred cccccceeeeeeCCeEEEEEEEeCCCchhh
Q psy2646 4 LLPYQTLQNKKEERTRTLIVIWDTAGQERF 33 (168)
Q Consensus 4 ~~~t~~~~~~~~~~~~~~l~l~Dt~G~~~~ 33 (168)
+.++++.-...++.+.++|.++|.|..+.+
T Consensus 76 ~~~~~~~~~~~ie~~~~rfLi~~~P~~~~~ 105 (241)
T PTZ00393 76 YLNPVLNHPTKIEHGKIKILILDAPTNDLL 105 (241)
T ss_pred ccchhcccchhhccCceeEEEeCCCCHHHH
Confidence 455566666667788899999999987654
No 498
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=35.03 E-value=1.1e+02 Score=18.94 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=34.2
Q ss_pred ccchhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEecCC
Q psy2646 35 TITSSYYRGAHGIIVVYDCTDQETFNNLKQWLEEIDRYACDNVNKLLVGNKND 87 (168)
Q Consensus 35 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 87 (168)
++.+.-+++|.++++-+.....-++.++......+.+...++.- ++.|...|
T Consensus 27 pLl~~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~-ii~G~~id 78 (95)
T PF12327_consen 27 PLLDVDIKGAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDAN-IIWGASID 78 (95)
T ss_dssp TTSTS-GGG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSE-EEEEEEE-
T ss_pred ccccCChHHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCce-EEEEEEEC
Confidence 45556788999999999887667888888888888776544444 55666665
No 499
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=34.78 E-value=1.1e+02 Score=19.37 Aligned_cols=42 Identities=14% Similarity=-0.014 Sum_probs=25.6
Q ss_pred hhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEecCCC
Q psy2646 40 YYRGAHGIIVVYDCTDQ--ETFNNLKQWLEEIDRYACDNVNKLLVGNKNDQ 88 (168)
Q Consensus 40 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl 88 (168)
.+++||++|..+|...+ .+.-++ -... ..++|++++.+....
T Consensus 58 ~i~~~D~via~l~~~~~d~Gt~~El----G~A~---algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 58 GIRECDIVIANLDGFRPDSGTAFEL----GYAY---ALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHSSEEEEEECSSS--HHHHHHH----HHHH---HTTSEEEEEECCCCT
T ss_pred HHHHCCEEEEECCCCCCCCcHHHHH----HHHH---HCCCEEEEEEcCCcc
Confidence 46789999999988442 221111 1112 236899988877654
No 500
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=33.75 E-value=93 Score=20.70 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=29.3
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEE
Q psy2646 42 RGAHGIIVVYDCTDQETFNNLKQWLEEIDRYA--CDNVNKLL 81 (168)
Q Consensus 42 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piiv 81 (168)
..-||-||.+-++...+-..+..|+..+.+-+ ...+|+++
T Consensus 82 eq~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 82 EQEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred EeccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 34678888888887777788899999986632 33577665
Done!